Query 011692
Match_columns 479
No_of_seqs 259 out of 827
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 04:11:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011692.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011692hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4563 Cell cycle-regulated h 99.9 3.7E-24 8.1E-29 216.4 16.3 273 62-377 37-330 (400)
2 KOG1840 Kinesin light chain [C 99.7 7.2E-17 1.6E-21 173.5 20.0 164 63-311 238-402 (508)
3 KOG1840 Kinesin light chain [C 99.6 2.7E-14 5.8E-19 153.7 20.6 159 66-309 199-358 (508)
4 PF13424 TPR_12: Tetratricopep 99.5 6.8E-14 1.5E-18 112.8 9.2 78 230-308 1-78 (78)
5 KOG4626 O-linked N-acetylgluco 99.4 7E-13 1.5E-17 142.1 9.8 56 65-128 217-272 (966)
6 KOG4626 O-linked N-acetylgluco 99.3 4.8E-11 1E-15 128.3 14.0 167 65-306 319-486 (966)
7 TIGR02521 type_IV_pilW type IV 99.1 2.4E-09 5.2E-14 98.9 17.3 168 64-305 29-198 (234)
8 TIGR00990 3a0801s09 mitochondr 99.1 6.4E-10 1.4E-14 122.7 15.9 167 65-307 330-498 (615)
9 PRK11189 lipoprotein NlpI; Pro 99.1 1.9E-09 4.2E-14 108.9 18.0 173 65-306 63-266 (296)
10 TIGR00990 3a0801s09 mitochondr 99.1 3.8E-09 8.2E-14 116.6 20.7 177 66-311 399-577 (615)
11 PF14938 SNAP: Soluble NSF att 99.1 5E-09 1.1E-13 105.2 18.2 149 66-305 35-184 (282)
12 KOG4563 Cell cycle-regulated h 99.1 3.7E-11 8.1E-16 122.6 1.2 307 1-322 1-342 (400)
13 TIGR02521 type_IV_pilW type IV 99.1 7.6E-09 1.7E-13 95.5 16.3 166 66-305 65-232 (234)
14 KOG1130 Predicted G-alpha GTPa 99.0 2.8E-09 6E-14 110.7 11.7 98 207-307 209-306 (639)
15 PF13424 TPR_12: Tetratricopep 99.0 3.1E-09 6.7E-14 85.5 9.6 60 207-266 19-78 (78)
16 PRK15359 type III secretion sy 99.0 4.9E-09 1.1E-13 95.3 11.7 84 207-305 38-121 (144)
17 KOG1130 Predicted G-alpha GTPa 98.9 2.5E-09 5.4E-14 111.0 7.7 172 65-306 94-265 (639)
18 CHL00033 ycf3 photosystem I as 98.9 3.3E-08 7.2E-13 91.2 14.2 125 64-278 33-157 (168)
19 COG3063 PilF Tfp pilus assembl 98.9 4.5E-08 9.7E-13 95.4 15.2 142 62-309 31-172 (250)
20 KOG0553 TPR repeat-containing 98.9 1.6E-08 3.4E-13 101.7 12.2 105 61-265 76-180 (304)
21 PRK09782 bacteriophage N4 rece 98.9 2.8E-08 6E-13 115.4 15.6 161 68-305 544-706 (987)
22 PRK12370 invasion protein regu 98.9 5.1E-08 1.1E-12 106.8 16.5 85 207-305 386-470 (553)
23 PRK15174 Vi polysaccharide exp 98.8 6E-08 1.3E-12 108.4 16.5 161 70-306 216-382 (656)
24 PRK12370 invasion protein regu 98.8 7.6E-08 1.7E-12 105.4 16.5 48 68-123 260-310 (553)
25 PF13414 TPR_11: TPR repeat; P 98.8 1.6E-08 3.6E-13 79.2 8.2 65 233-305 2-67 (69)
26 KOG1126 DNA-binding cell divis 98.8 6.4E-09 1.4E-13 112.9 7.5 85 207-306 435-519 (638)
27 PRK15359 type III secretion sy 98.8 4.2E-08 9.1E-13 89.2 11.7 113 68-288 26-138 (144)
28 PRK10370 formate-dependent nit 98.8 5.9E-08 1.3E-12 93.0 13.3 119 79-305 52-173 (198)
29 PRK11788 tetratricopeptide rep 98.8 2E-07 4.3E-12 95.8 18.1 54 66-124 69-123 (389)
30 PRK15179 Vi polysaccharide bio 98.8 9.8E-08 2.1E-12 107.3 16.8 134 66-307 86-219 (694)
31 PRK15174 Vi polysaccharide exp 98.8 7.4E-08 1.6E-12 107.8 15.8 79 219-305 269-347 (656)
32 PLN03088 SGT1, suppressor of 98.8 4.6E-08 1E-12 101.7 13.2 100 66-265 2-101 (356)
33 PRK11788 tetratricopeptide rep 98.8 2.1E-07 4.6E-12 95.5 17.8 59 59-125 28-86 (389)
34 CHL00033 ycf3 photosystem I as 98.8 4.7E-08 1E-12 90.2 11.4 101 207-312 49-149 (168)
35 TIGR03302 OM_YfiO outer membra 98.8 3.7E-07 8.1E-12 87.9 17.5 149 64-306 31-196 (235)
36 KOG1126 DNA-binding cell divis 98.8 1.7E-08 3.6E-13 109.8 8.5 133 66-306 421-553 (638)
37 TIGR02917 PEP_TPR_lipo putativ 98.8 1.4E-07 3E-12 104.2 15.9 187 66-307 22-224 (899)
38 TIGR02552 LcrH_SycD type III s 98.7 9.5E-08 2.1E-12 83.9 11.3 84 208-306 32-115 (135)
39 PF14938 SNAP: Soluble NSF att 98.7 2.3E-07 4.9E-12 93.3 15.4 98 207-308 49-147 (282)
40 TIGR03302 OM_YfiO outer membra 98.7 4E-07 8.6E-12 87.7 16.3 150 67-303 71-230 (235)
41 PRK11447 cellulose synthase su 98.7 1.5E-07 3.3E-12 111.4 15.6 167 71-305 274-447 (1157)
42 KOG1125 TPR repeat-containing 98.7 2E-07 4.4E-12 100.2 14.5 107 206-320 429-555 (579)
43 PF10516 SHNi-TPR: SHNi-TPR; 98.7 2.1E-08 4.4E-13 71.7 4.6 38 234-271 1-38 (38)
44 PRK11189 lipoprotein NlpI; Pro 98.7 2.6E-07 5.7E-12 93.4 13.4 84 208-306 79-162 (296)
45 PRK09782 bacteriophage N4 rece 98.6 5.2E-07 1.1E-11 105.0 16.5 162 68-307 511-674 (987)
46 KOG1173 Anaphase-promoting com 98.6 2.2E-07 4.7E-12 99.8 12.0 91 207-305 428-518 (611)
47 PRK11447 cellulose synthase su 98.6 2.9E-07 6.3E-12 109.0 13.7 168 68-305 353-524 (1157)
48 PRK02603 photosystem I assembl 98.6 7.7E-07 1.7E-11 82.6 13.4 55 62-121 31-85 (172)
49 PRK10370 formate-dependent nit 98.6 1.6E-06 3.4E-11 83.2 15.5 103 66-265 73-175 (198)
50 PF13429 TPR_15: Tetratricopep 98.6 5.3E-07 1.2E-11 89.6 12.6 64 236-307 216-279 (280)
51 TIGR02917 PEP_TPR_lipo putativ 98.5 2E-06 4.4E-11 95.1 16.5 168 65-308 124-293 (899)
52 KOG0547 Translocase of outer m 98.5 1.4E-06 3E-11 92.5 14.1 99 206-313 475-574 (606)
53 COG3063 PilF Tfp pilus assembl 98.5 1.3E-06 2.8E-11 85.4 12.5 129 67-301 70-198 (250)
54 PRK15363 pathogenicity island 98.5 2.6E-06 5.5E-11 79.2 13.3 85 207-306 49-133 (157)
55 TIGR02795 tol_pal_ybgF tol-pal 98.5 2.3E-06 5E-11 72.4 11.9 91 207-306 16-106 (119)
56 TIGR02795 tol_pal_ybgF tol-pal 98.5 4.1E-06 9E-11 70.8 13.1 105 66-264 2-106 (119)
57 PF09976 TPR_21: Tetratricopep 98.5 2.1E-05 4.6E-10 71.0 18.4 139 62-303 7-145 (145)
58 PRK02603 photosystem I assembl 98.5 6.5E-06 1.4E-10 76.4 15.5 97 207-315 49-145 (172)
59 PRK04841 transcriptional regul 98.4 1.2E-05 2.5E-10 92.2 19.8 153 66-307 452-604 (903)
60 KOG1839 Uncharacterized protei 98.4 2.8E-06 6.2E-11 98.5 13.7 164 62-311 928-1092(1236)
61 TIGR02552 LcrH_SycD type III s 98.4 1.4E-05 3.1E-10 70.0 15.1 100 66-265 17-116 (135)
62 PRK10153 DNA-binding transcrip 98.4 7.9E-06 1.7E-10 89.3 16.3 142 65-305 338-482 (517)
63 PRK04841 transcriptional regul 98.4 2E-05 4.2E-10 90.4 20.0 152 66-307 491-643 (903)
64 cd05804 StaR_like StaR_like; a 98.4 1.5E-05 3.3E-10 80.9 16.9 171 68-305 45-215 (355)
65 KOG0553 TPR repeat-containing 98.4 1.1E-06 2.4E-11 88.6 8.1 99 207-320 95-199 (304)
66 PLN03088 SGT1, suppressor of 98.3 1.7E-06 3.6E-11 90.2 9.1 85 207-306 16-100 (356)
67 PRK15363 pathogenicity island 98.3 1.4E-05 3E-10 74.3 13.5 103 63-265 32-134 (157)
68 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 2.3E-06 5E-11 90.9 9.4 71 230-305 71-141 (453)
69 KOG0550 Molecular chaperone (D 98.3 5E-06 1.1E-10 86.9 11.5 101 207-318 263-368 (486)
70 PF12895 Apc3: Anaphase-promot 98.3 3.7E-06 8.1E-11 68.8 8.2 82 207-302 3-84 (84)
71 PF13374 TPR_10: Tetratricopep 98.3 1.5E-06 3.2E-11 61.2 4.9 42 233-274 1-42 (42)
72 cd00189 TPR Tetratricopeptide 98.3 8.2E-06 1.8E-10 63.0 9.5 97 68-264 2-98 (100)
73 KOG1173 Anaphase-promoting com 98.2 6.6E-06 1.4E-10 88.6 11.5 171 66-305 312-484 (611)
74 KOG1125 TPR repeat-containing 98.2 4.1E-06 9E-11 90.3 9.9 131 66-296 430-562 (579)
75 PRK10049 pgaA outer membrane p 98.2 1.6E-05 3.4E-10 90.6 14.9 129 66-303 49-177 (765)
76 PF13432 TPR_16: Tetratricopep 98.2 3.8E-06 8.1E-11 65.2 6.5 60 238-305 1-60 (65)
77 KOG2002 TPR-containing nuclear 98.2 2.4E-05 5.1E-10 88.7 14.0 94 207-311 284-377 (1018)
78 KOG1155 Anaphase-promoting com 98.1 3.2E-05 6.9E-10 82.0 12.6 80 219-306 417-496 (559)
79 KOG0543 FKBP-type peptidyl-pro 98.1 0.00022 4.8E-09 74.7 18.6 64 234-305 257-320 (397)
80 KOG0547 Translocase of outer m 98.1 1.8E-05 3.9E-10 84.3 10.3 50 64-121 324-373 (606)
81 KOG4234 TPR repeat-containing 98.1 9.3E-05 2E-09 71.5 14.0 44 52-95 81-124 (271)
82 PF13374 TPR_10: Tetratricopep 98.0 8.5E-06 1.8E-10 57.2 5.0 41 66-106 2-42 (42)
83 PRK15179 Vi polysaccharide bio 98.0 7.6E-05 1.7E-09 84.3 15.2 133 67-304 49-182 (694)
84 PF13414 TPR_11: TPR repeat; P 98.0 4.5E-05 9.7E-10 59.6 9.4 49 65-121 2-50 (69)
85 PF12895 Apc3: Anaphase-promot 98.0 3.4E-05 7.4E-10 63.1 9.0 83 79-260 2-84 (84)
86 KOG2002 TPR-containing nuclear 98.0 6E-05 1.3E-09 85.5 13.5 215 65-311 306-531 (1018)
87 PRK10803 tol-pal system protei 98.0 3.4E-05 7.3E-10 77.5 10.5 85 217-306 160-247 (263)
88 KOG2003 TPR repeat-containing 98.0 1.9E-05 4.1E-10 83.4 8.7 118 66-291 490-607 (840)
89 KOG0548 Molecular co-chaperone 98.0 6.1E-05 1.3E-09 80.9 12.3 162 65-308 297-458 (539)
90 KOG0548 Molecular co-chaperone 98.0 0.0002 4.3E-09 77.1 15.5 65 49-122 206-271 (539)
91 cd00189 TPR Tetratricopeptide 98.0 2.3E-05 4.9E-10 60.4 6.4 84 207-305 14-97 (100)
92 PRK10747 putative protoheme IX 98.0 0.00017 3.7E-09 76.0 15.0 68 230-306 324-391 (398)
93 PF09976 TPR_21: Tetratricopep 97.9 0.00016 3.5E-09 65.3 12.8 98 66-261 48-145 (145)
94 KOG1155 Anaphase-promoting com 97.9 9.8E-05 2.1E-09 78.4 12.8 142 72-321 336-483 (559)
95 PRK10049 pgaA outer membrane p 97.9 0.00013 2.7E-09 83.3 14.7 126 74-308 23-148 (765)
96 PLN02789 farnesyltranstransfer 97.9 0.00023 4.9E-09 73.5 14.3 39 75-121 46-84 (320)
97 cd05804 StaR_like StaR_like; a 97.9 0.00026 5.7E-09 71.9 14.3 70 229-306 109-178 (355)
98 KOG2076 RNA polymerase III tra 97.8 0.00031 6.8E-09 79.3 15.4 135 65-307 138-272 (895)
99 COG5010 TadD Flp pilus assembl 97.8 0.00016 3.5E-09 71.9 11.7 122 68-297 102-223 (257)
100 KOG1129 TPR repeat-containing 97.8 1.8E-05 3.8E-10 81.0 4.9 92 217-313 341-432 (478)
101 PRK10803 tol-pal system protei 97.8 0.00029 6.2E-09 70.8 13.4 104 68-265 144-248 (263)
102 PF13525 YfiO: Outer membrane 97.8 0.0011 2.4E-08 63.5 16.8 148 65-306 4-171 (203)
103 KOG4340 Uncharacterized conser 97.8 0.00028 6E-09 71.7 12.9 156 66-303 44-205 (459)
104 PF13429 TPR_15: Tetratricopep 97.8 0.00032 6.9E-09 69.7 13.3 87 207-308 160-246 (280)
105 KOG4648 Uncharacterized conser 97.8 9.8E-05 2.1E-09 76.1 9.5 52 62-121 93-144 (536)
106 KOG1839 Uncharacterized protei 97.8 0.00017 3.7E-09 84.2 12.6 162 65-311 972-1134(1236)
107 KOG1129 TPR repeat-containing 97.8 7.4E-05 1.6E-09 76.6 8.2 159 70-305 227-387 (478)
108 PRK10866 outer membrane biogen 97.8 0.0018 3.8E-08 64.2 17.8 62 233-299 174-235 (243)
109 PF06552 TOM20_plant: Plant sp 97.7 0.00044 9.6E-09 65.7 12.4 36 88-124 6-41 (186)
110 PRK14720 transcript cleavage f 97.7 0.00049 1.1E-08 79.3 14.6 150 66-307 31-180 (906)
111 PF13371 TPR_9: Tetratricopept 97.7 8.8E-05 1.9E-09 58.4 5.9 60 240-307 1-60 (73)
112 KOG4162 Predicted calmodulin-b 97.7 0.00048 1E-08 76.8 13.4 132 66-305 650-783 (799)
113 KOG0550 Molecular chaperone (D 97.7 0.00067 1.5E-08 71.4 13.5 80 231-314 246-325 (486)
114 KOG1586 Protein required for f 97.7 0.0019 4.1E-08 63.8 15.8 90 208-301 88-179 (288)
115 PRK11906 transcriptional regul 97.7 0.00089 1.9E-08 71.7 14.6 148 68-311 257-407 (458)
116 PRK14574 hmsH outer membrane p 97.6 0.0006 1.3E-08 78.5 14.0 93 207-315 116-208 (822)
117 PF13432 TPR_16: Tetratricopep 97.6 0.0002 4.3E-09 55.4 7.1 45 70-122 1-45 (65)
118 COG1729 Uncharacterized protei 97.6 0.0008 1.7E-08 67.5 12.9 105 66-264 141-245 (262)
119 TIGR00540 hemY_coli hemY prote 97.6 0.001 2.2E-08 70.3 14.6 66 234-306 335-400 (409)
120 COG5010 TadD Flp pilus assembl 97.6 0.00059 1.3E-08 67.9 11.8 83 207-304 114-196 (257)
121 PF13525 YfiO: Outer membrane 97.6 0.004 8.6E-08 59.7 17.3 143 66-295 42-197 (203)
122 KOG4642 Chaperone-dependent E3 97.6 0.00028 6.1E-09 69.7 9.4 107 64-270 8-114 (284)
123 PF09986 DUF2225: Uncharacteri 97.6 0.00068 1.5E-08 66.2 11.9 100 206-305 90-194 (214)
124 KOG1174 Anaphase-promoting com 97.6 0.00086 1.9E-08 70.7 12.9 83 217-308 421-503 (564)
125 KOG2376 Signal recognition par 97.6 0.0025 5.4E-08 69.6 16.7 72 233-304 174-252 (652)
126 COG2956 Predicted N-acetylgluc 97.5 0.0018 4E-08 66.4 14.0 87 207-307 194-280 (389)
127 KOG2003 TPR repeat-containing 97.5 0.00061 1.3E-08 72.3 10.8 86 207-307 504-589 (840)
128 PRK10747 putative protoheme IX 97.5 0.0023 4.9E-08 67.6 14.9 76 231-306 260-358 (398)
129 PF12688 TPR_5: Tetratrico pep 97.5 0.0039 8.6E-08 55.5 13.9 102 67-262 2-103 (120)
130 PF00515 TPR_1: Tetratricopept 97.4 0.00022 4.7E-09 48.4 4.4 31 276-306 1-31 (34)
131 COG1729 Uncharacterized protei 97.4 0.00084 1.8E-08 67.3 10.1 93 208-305 144-244 (262)
132 PF14559 TPR_19: Tetratricopep 97.4 0.00015 3.2E-09 56.3 3.8 56 245-308 2-57 (68)
133 PRK10866 outer membrane biogen 97.4 0.013 2.9E-07 58.0 18.4 52 65-121 31-82 (243)
134 PF12688 TPR_5: Tetratrico pep 97.4 0.00073 1.6E-08 60.2 8.4 66 235-305 2-67 (120)
135 PLN02789 farnesyltranstransfer 97.4 0.0054 1.2E-07 63.4 15.8 135 66-306 71-213 (320)
136 COG4235 Cytochrome c biogenesi 97.4 0.0041 8.9E-08 63.1 14.4 109 66-275 156-264 (287)
137 TIGR00540 hemY_coli hemY prote 97.3 0.0039 8.5E-08 65.9 14.5 135 63-304 81-215 (409)
138 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.00094 2E-08 71.4 9.6 53 64-124 73-128 (453)
139 KOG0545 Aryl-hydrocarbon recep 97.3 0.0056 1.2E-07 61.0 14.1 37 63-99 175-211 (329)
140 KOG4555 TPR repeat-containing 97.3 0.0071 1.5E-07 55.2 13.4 123 47-265 23-146 (175)
141 PF13176 TPR_7: Tetratricopept 97.3 0.00053 1.2E-08 47.8 4.8 32 236-267 1-32 (36)
142 KOG0624 dsRNA-activated protei 97.3 0.027 5.8E-07 58.6 18.9 138 64-306 36-185 (504)
143 KOG1941 Acetylcholine receptor 97.3 0.0044 9.5E-08 64.6 13.1 99 206-305 135-235 (518)
144 KOG4234 TPR repeat-containing 97.2 0.0039 8.6E-08 60.5 11.6 79 233-314 94-172 (271)
145 PF07719 TPR_2: Tetratricopept 97.2 0.00058 1.2E-08 45.9 4.4 31 276-306 1-31 (34)
146 PF06552 TOM20_plant: Plant sp 97.2 0.001 2.2E-08 63.2 7.5 89 215-311 6-108 (186)
147 PF00515 TPR_1: Tetratricopept 97.2 0.00075 1.6E-08 45.7 4.7 32 234-265 1-32 (34)
148 KOG4555 TPR repeat-containing 97.1 0.0037 7.9E-08 57.0 9.1 90 205-305 55-144 (175)
149 KOG1941 Acetylcholine receptor 97.1 0.017 3.7E-07 60.3 15.2 154 66-307 162-322 (518)
150 PF13176 TPR_7: Tetratricopept 97.0 0.0011 2.5E-08 46.1 4.6 30 278-307 1-30 (36)
151 PRK15331 chaperone protein Sic 97.0 0.0025 5.4E-08 59.8 7.7 89 208-304 40-133 (165)
152 PF12968 DUF3856: Domain of Un 97.0 0.012 2.6E-07 52.7 11.3 107 207-313 23-137 (144)
153 PF07719 TPR_2: Tetratricopept 97.0 0.0017 3.7E-08 43.5 4.7 32 234-265 1-32 (34)
154 PF13181 TPR_8: Tetratricopept 96.9 0.0015 3.3E-08 44.0 4.3 32 276-307 1-32 (34)
155 PF13181 TPR_8: Tetratricopept 96.9 0.0016 3.5E-08 43.9 4.4 32 234-265 1-32 (34)
156 KOG3060 Uncharacterized conser 96.9 0.0085 1.8E-07 59.9 11.0 76 234-314 154-229 (289)
157 KOG1128 Uncharacterized conser 96.9 0.0055 1.2E-07 68.4 10.6 51 64-122 478-533 (777)
158 PRK14720 transcript cleavage f 96.9 0.013 2.7E-07 68.0 13.9 46 67-120 117-162 (906)
159 PF08631 SPO22: Meiosis protei 96.9 0.018 3.8E-07 58.0 13.5 141 76-305 3-150 (278)
160 KOG1174 Anaphase-promoting com 96.9 0.012 2.5E-07 62.4 12.3 173 66-313 232-405 (564)
161 PF13428 TPR_14: Tetratricopep 96.8 0.003 6.6E-08 45.7 5.3 42 67-116 2-43 (44)
162 PF09295 ChAPs: ChAPs (Chs5p-A 96.8 0.021 4.6E-07 60.7 13.4 75 211-300 218-292 (395)
163 KOG2376 Signal recognition par 96.7 0.081 1.8E-06 58.2 17.6 81 206-290 188-276 (652)
164 KOG2076 RNA polymerase III tra 96.7 0.034 7.4E-07 63.4 15.1 127 65-297 413-547 (895)
165 COG0457 NrfG FOG: TPR repeat [ 96.6 0.069 1.5E-06 46.3 13.5 172 66-308 59-234 (291)
166 PRK14574 hmsH outer membrane p 96.5 0.035 7.5E-07 64.3 13.5 127 66-301 102-228 (822)
167 PF03704 BTAD: Bacterial trans 96.4 0.032 6.9E-07 50.0 10.5 97 207-311 20-131 (146)
168 COG0457 NrfG FOG: TPR repeat [ 96.4 0.13 2.7E-06 44.6 13.9 95 210-309 105-200 (291)
169 COG2956 Predicted N-acetylgluc 96.4 0.46 1E-05 49.3 19.7 46 70-123 39-84 (389)
170 PRK15331 chaperone protein Sic 96.4 0.046 9.9E-07 51.4 11.5 101 62-262 33-133 (165)
171 PF13512 TPR_18: Tetratricopep 96.3 0.024 5.2E-07 52.1 9.2 76 207-291 24-99 (142)
172 PF12569 NARP1: NMDA receptor- 96.3 0.12 2.6E-06 56.9 16.0 65 233-305 193-257 (517)
173 PF14559 TPR_19: Tetratricopep 96.3 0.0063 1.4E-07 47.1 4.5 43 76-126 1-43 (68)
174 KOG0543 FKBP-type peptidyl-pro 96.3 0.0088 1.9E-07 63.0 6.9 81 232-312 206-293 (397)
175 PF12862 Apc5: Anaphase-promot 96.2 0.037 8E-07 46.7 9.2 68 242-309 6-74 (94)
176 PF12569 NARP1: NMDA receptor- 96.1 0.11 2.3E-06 57.3 14.3 137 66-308 194-337 (517)
177 KOG1585 Protein required for f 96.1 0.53 1.2E-05 47.3 17.5 94 207-305 85-179 (308)
178 PF13428 TPR_14: Tetratricopep 96.1 0.0096 2.1E-07 43.1 4.1 42 235-284 2-43 (44)
179 PF13371 TPR_9: Tetratricopept 96.0 0.019 4.1E-07 45.0 6.1 52 207-265 9-60 (73)
180 KOG4642 Chaperone-dependent E3 96.0 0.022 4.8E-07 56.6 7.5 84 217-308 27-110 (284)
181 KOG1128 Uncharacterized conser 96.0 0.02 4.3E-07 64.1 7.9 85 207-306 499-583 (777)
182 KOG0551 Hsp90 co-chaperone CNS 96.0 0.27 5.8E-06 51.1 15.4 106 65-266 80-185 (390)
183 COG4105 ComL DNA uptake lipopr 95.9 0.44 9.6E-06 47.8 16.2 84 208-296 128-224 (254)
184 PF12862 Apc5: Anaphase-promot 95.9 0.1 2.3E-06 43.9 10.3 77 207-285 12-90 (94)
185 COG4785 NlpI Lipoprotein NlpI, 95.8 0.089 1.9E-06 51.9 10.9 53 64-124 63-115 (297)
186 KOG1586 Protein required for f 95.8 0.093 2E-06 52.2 10.9 97 208-307 29-145 (288)
187 COG4783 Putative Zn-dependent 95.8 0.13 2.7E-06 55.6 12.8 128 66-301 306-433 (484)
188 PLN03081 pentatricopeptide (PP 95.8 0.3 6.4E-06 55.2 16.5 78 217-304 377-454 (697)
189 COG4235 Cytochrome c biogenesi 95.7 0.052 1.1E-06 55.2 9.2 77 229-306 151-257 (287)
190 KOG1127 TPR repeat-containing 95.7 0.12 2.5E-06 60.0 12.7 146 67-313 563-708 (1238)
191 KOG3617 WD40 and TPR repeat-co 95.7 0.39 8.4E-06 55.0 16.3 56 63-121 816-871 (1416)
192 KOG1156 N-terminal acetyltrans 95.6 0.065 1.4E-06 59.4 9.8 47 67-121 8-54 (700)
193 PRK11906 transcriptional regul 95.5 0.19 4.1E-06 54.2 13.0 79 209-301 354-432 (458)
194 KOG1127 TPR repeat-containing 95.5 0.14 2.9E-06 59.4 12.2 53 61-121 448-505 (1238)
195 PLN03218 maturation of RBCL 1; 95.5 0.37 8E-06 57.5 16.4 86 207-305 663-748 (1060)
196 COG4783 Putative Zn-dependent 95.5 0.28 6E-06 53.0 13.8 41 73-121 347-387 (484)
197 PLN03081 pentatricopeptide (PP 95.4 0.25 5.4E-06 55.8 14.3 60 234-301 494-553 (697)
198 smart00028 TPR Tetratricopepti 95.3 0.015 3.2E-07 36.1 2.5 29 277-305 2-30 (34)
199 PF13431 TPR_17: Tetratricopep 95.3 0.013 2.7E-07 40.6 2.2 30 88-125 1-30 (34)
200 PF13431 TPR_17: Tetratricopep 95.3 0.0087 1.9E-07 41.4 1.4 33 256-296 1-33 (34)
201 KOG0551 Hsp90 co-chaperone CNS 95.3 0.12 2.6E-06 53.6 10.1 96 204-307 85-184 (390)
202 PF09986 DUF2225: Uncharacteri 95.3 0.28 6.1E-06 47.9 12.4 109 77-265 88-196 (214)
203 KOG0495 HAT repeat protein [RN 95.3 0.13 2.7E-06 57.5 10.8 85 207-307 632-716 (913)
204 PF08631 SPO22: Meiosis protei 95.2 0.2 4.4E-06 50.4 11.4 88 206-293 6-101 (278)
205 PF04184 ST7: ST7 protein; In 95.2 0.39 8.4E-06 52.3 13.9 61 234-300 259-319 (539)
206 smart00028 TPR Tetratricopepti 95.2 0.024 5.1E-07 35.2 3.0 30 235-264 2-31 (34)
207 KOG1585 Protein required for f 95.1 0.57 1.2E-05 47.0 13.8 94 208-304 125-218 (308)
208 PLN03218 maturation of RBCL 1; 95.1 0.6 1.3E-05 55.7 16.5 167 66-304 614-782 (1060)
209 PF03704 BTAD: Bacterial trans 95.0 1.5 3.3E-05 39.0 15.5 68 207-281 76-144 (146)
210 PF13174 TPR_6: Tetratricopept 95.0 0.023 4.9E-07 37.6 2.8 29 277-305 1-29 (33)
211 COG3118 Thioredoxin domain-con 95.0 0.46 1E-05 48.6 13.1 131 67-273 135-272 (304)
212 PF09295 ChAPs: ChAPs (Chs5p-A 94.8 0.27 5.9E-06 52.4 11.6 47 207-260 248-294 (395)
213 KOG4162 Predicted calmodulin-b 94.8 0.18 3.9E-06 57.0 10.6 103 66-266 684-786 (799)
214 PF02259 FAT: FAT domain; Int 94.4 1.2 2.6E-05 44.9 14.9 51 231-289 249-305 (352)
215 PF10516 SHNi-TPR: SHNi-TPR; 94.4 0.058 1.3E-06 38.6 3.6 35 276-310 1-35 (38)
216 PF13512 TPR_18: Tetratricopep 94.3 0.81 1.8E-05 42.1 11.8 51 66-121 10-60 (142)
217 KOG2471 TPR repeat-containing 94.2 0.033 7.1E-07 60.2 2.8 78 231-308 278-367 (696)
218 PF10602 RPN7: 26S proteasome 94.1 0.36 7.9E-06 45.7 9.7 88 214-307 17-104 (177)
219 PLN03077 Protein ECB2; Provisi 94.0 1.5 3.3E-05 50.7 16.4 87 207-299 603-714 (857)
220 KOG0376 Serine-threonine phosp 94.0 0.049 1.1E-06 58.6 3.9 101 65-265 3-103 (476)
221 KOG1070 rRNA processing protei 93.9 0.49 1.1E-05 56.7 11.8 86 213-314 1517-1604(1710)
222 PF12968 DUF3856: Domain of Un 93.9 4.9 0.00011 36.4 15.8 117 68-269 11-135 (144)
223 KOG0624 dsRNA-activated protei 93.8 0.66 1.4E-05 48.6 11.4 82 207-303 169-250 (504)
224 cd09034 BRO1_Alix_like Protein 93.8 6.8 0.00015 40.4 19.2 39 272-310 247-285 (345)
225 PF10300 DUF3808: Protein of u 93.8 1.4 3.1E-05 47.9 14.6 91 207-307 281-371 (468)
226 COG3071 HemY Uncharacterized e 93.6 0.32 7E-06 51.3 8.9 66 231-305 325-390 (400)
227 KOG4648 Uncharacterized conser 93.5 0.18 4E-06 52.6 6.7 82 217-306 114-195 (536)
228 COG4785 NlpI Lipoprotein NlpI, 93.5 0.11 2.4E-06 51.3 4.9 84 209-300 74-157 (297)
229 cd02684 MIT_2 MIT: domain cont 93.5 0.59 1.3E-05 38.3 8.5 61 62-122 2-63 (75)
230 PF10255 Paf67: RNA polymerase 93.4 0.1 2.2E-06 55.7 4.8 73 237-309 125-197 (404)
231 COG4105 ComL DNA uptake lipopr 93.3 6.7 0.00014 39.5 17.2 50 66-120 34-83 (254)
232 PF04212 MIT: MIT (microtubule 93.2 0.76 1.6E-05 36.5 8.6 60 63-122 2-62 (69)
233 cd02678 MIT_VPS4 MIT: domain c 93.1 0.79 1.7E-05 37.2 8.7 60 63-122 3-63 (75)
234 KOG1156 N-terminal acetyltrans 93.0 0.34 7.3E-06 54.0 8.2 83 218-312 29-111 (700)
235 PF10300 DUF3808: Protein of u 93.0 0.29 6.2E-06 53.2 7.7 87 207-304 247-333 (468)
236 PF13174 TPR_6: Tetratricopept 92.9 0.15 3.3E-06 33.5 3.6 30 235-264 1-30 (33)
237 PF10602 RPN7: 26S proteasome 92.9 0.69 1.5E-05 43.8 9.3 91 207-303 50-140 (177)
238 cd09242 BRO1_ScBro1_like Prote 92.7 6.1 0.00013 41.3 17.0 37 273-309 241-277 (348)
239 cd09241 BRO1_ScRim20-like Prot 92.3 4.9 0.00011 42.1 15.6 36 274-309 235-270 (355)
240 cd02683 MIT_1 MIT: domain cont 92.3 1 2.2E-05 37.1 8.3 59 64-122 4-63 (77)
241 cd02681 MIT_calpain7_1 MIT: do 92.2 1.2 2.5E-05 36.8 8.6 47 65-111 5-53 (76)
242 COG4700 Uncharacterized protei 92.2 4.8 0.0001 39.3 13.8 63 232-303 158-220 (251)
243 cd09240 BRO1_Alix Protein-inte 92.2 6 0.00013 41.4 16.0 35 274-308 253-287 (346)
244 KOG0495 HAT repeat protein [RN 91.9 1.4 3.1E-05 49.5 11.3 81 207-302 665-745 (913)
245 PF04733 Coatomer_E: Coatomer 91.8 0.93 2E-05 46.2 9.2 87 207-301 167-261 (290)
246 PRK10153 DNA-binding transcrip 91.7 0.64 1.4E-05 51.3 8.5 92 216-307 358-451 (517)
247 PLN03077 Protein ECB2; Provisi 91.7 4.8 0.0001 46.7 16.1 63 234-303 554-616 (857)
248 KOG4340 Uncharacterized conser 91.6 1.5 3.3E-05 45.3 10.3 31 275-305 143-173 (459)
249 PF11817 Foie-gras_1: Foie gra 91.6 2.9 6.2E-05 41.5 12.3 91 206-299 151-241 (247)
250 PF10952 DUF2753: Protein of u 91.5 1.6 3.5E-05 39.5 9.2 69 236-304 3-78 (140)
251 smart00745 MIT Microtubule Int 91.4 1.8 3.8E-05 34.9 8.8 60 63-122 5-65 (77)
252 PF00244 14-3-3: 14-3-3 protei 91.3 0.74 1.6E-05 45.6 7.7 73 233-305 122-198 (236)
253 cd02656 MIT MIT: domain contai 91.2 1.9 4.2E-05 34.7 8.8 60 63-122 3-63 (75)
254 KOG3785 Uncharacterized conser 91.0 2.8 6E-05 44.3 11.7 51 237-295 154-204 (557)
255 smart00101 14_3_3 14-3-3 homol 90.7 1.8 4E-05 43.3 9.9 74 233-306 124-201 (244)
256 KOG2561 Adaptor protein NUB1, 90.7 6.4 0.00014 42.6 14.2 35 234-268 267-301 (568)
257 PF14853 Fis1_TPR_C: Fis1 C-te 90.4 0.9 1.9E-05 34.8 5.8 30 277-306 2-31 (53)
258 KOG0376 Serine-threonine phosp 90.4 0.15 3.3E-06 54.9 2.1 85 216-308 20-104 (476)
259 cd02682 MIT_AAA_Arch MIT: doma 90.3 2.9 6.4E-05 34.4 9.1 37 275-311 5-41 (75)
260 KOG1550 Extracellular protein 90.0 5.4 0.00012 44.3 13.8 80 208-306 308-394 (552)
261 KOG2709 Uncharacterized conser 90.0 1 2.2E-05 48.1 7.6 144 276-454 22-175 (560)
262 PF10345 Cohesin_load: Cohesin 89.8 17 0.00037 40.8 17.7 97 207-307 74-170 (608)
263 KOG1070 rRNA processing protei 89.5 3.5 7.6E-05 49.9 12.2 179 44-299 1503-1693(1710)
264 COG4700 Uncharacterized protei 89.2 1.9 4.1E-05 42.0 8.1 74 234-307 89-191 (251)
265 PF04212 MIT: MIT (microtubule 88.4 5.9 0.00013 31.3 9.4 37 276-312 5-41 (69)
266 KOG1308 Hsp70-interacting prot 88.4 0.2 4.3E-06 52.2 1.1 51 63-121 111-161 (377)
267 KOG2471 TPR repeat-containing 88.3 2 4.4E-05 46.9 8.6 49 232-288 333-381 (696)
268 PF02259 FAT: FAT domain; Int 88.1 10 0.00022 38.2 13.4 101 207-310 160-292 (352)
269 cd02680 MIT_calpain7_2 MIT: do 88.1 2.8 6E-05 34.5 7.4 40 63-102 3-42 (75)
270 cd09239 BRO1_HD-PTP_like Prote 88.0 39 0.00084 35.7 18.1 37 273-309 249-285 (361)
271 cd09246 BRO1_Alix_like_1 Prote 87.7 11 0.00023 39.7 13.4 33 274-306 245-277 (353)
272 cd02677 MIT_SNX15 MIT: domain 87.6 4.1 8.9E-05 33.4 8.2 58 63-120 3-61 (75)
273 PF04910 Tcf25: Transcriptiona 87.6 41 0.00088 35.5 18.6 103 207-317 117-234 (360)
274 COG3071 HemY Uncharacterized e 87.2 18 0.00039 38.6 14.5 72 234-305 263-357 (400)
275 PF09670 Cas_Cas02710: CRISPR- 87.1 33 0.00072 36.4 16.9 32 64-95 129-160 (379)
276 PF03097 BRO1: BRO1-like domai 87.0 13 0.00027 38.9 13.6 38 274-311 237-274 (377)
277 PF04184 ST7: ST7 protein; In 86.9 2.1 4.5E-05 46.8 7.7 99 206-306 172-289 (539)
278 KOG3616 Selective LIM binding 86.7 13 0.00027 42.8 13.7 68 230-299 768-847 (1636)
279 KOG2300 Uncharacterized conser 86.5 23 0.00051 39.0 15.1 129 206-376 336-467 (629)
280 COG1382 GimC Prefoldin, chaper 86.2 17 0.00036 32.6 11.8 75 235-315 17-91 (119)
281 PF07721 TPR_4: Tetratricopept 86.0 0.73 1.6E-05 29.7 2.4 25 277-301 2-26 (26)
282 KOG2047 mRNA splicing factor [ 86.0 6.9 0.00015 44.2 11.2 97 208-307 485-581 (835)
283 PF05278 PEARLI-4: Arabidopsis 85.9 17 0.00037 36.9 13.1 138 205-375 88-242 (269)
284 KOG1118 Lysophosphatidic acid 85.9 47 0.001 34.5 16.4 52 207-258 79-130 (366)
285 KOG3785 Uncharacterized conser 85.9 1.4 3.1E-05 46.4 5.6 82 207-302 36-117 (557)
286 PF07721 TPR_4: Tetratricopept 85.8 0.87 1.9E-05 29.3 2.7 24 235-258 2-25 (26)
287 KOG3617 WD40 and TPR repeat-co 85.4 2.5 5.4E-05 48.8 7.6 75 210-302 810-884 (1416)
288 KOG3616 Selective LIM binding 85.4 32 0.00069 39.8 15.9 73 233-308 660-738 (1636)
289 KOG0545 Aryl-hydrocarbon recep 85.4 2.9 6.4E-05 42.2 7.3 88 231-318 175-272 (329)
290 PF04781 DUF627: Protein of un 85.1 17 0.00036 32.3 11.1 46 72-122 2-47 (111)
291 PF05843 Suf: Suppressor of fo 84.9 4.5 9.7E-05 40.8 8.7 82 216-305 17-99 (280)
292 KOG1308 Hsp70-interacting prot 84.6 0.33 7.1E-06 50.6 0.4 76 222-305 136-211 (377)
293 cd02682 MIT_AAA_Arch MIT: doma 84.5 8.5 0.00018 31.7 8.5 48 65-112 5-53 (75)
294 PHA02537 M terminase endonucle 84.3 12 0.00025 37.3 11.0 113 205-320 95-227 (230)
295 KOG3364 Membrane protein invol 84.2 5.8 0.00012 36.6 8.1 70 233-306 31-101 (149)
296 PF04733 Coatomer_E: Coatomer 83.9 1.7 3.6E-05 44.4 5.1 93 217-317 148-242 (290)
297 COG2976 Uncharacterized protei 83.7 8.6 0.00019 37.5 9.5 87 207-306 103-189 (207)
298 cd02679 MIT_spastin MIT: domai 83.7 2.1 4.6E-05 35.6 4.7 37 273-309 5-41 (79)
299 PF10345 Cohesin_load: Cohesin 83.5 83 0.0018 35.3 22.4 155 63-309 56-212 (608)
300 PF08626 TRAPPC9-Trs120: Trans 83.1 1.1E+02 0.0024 37.4 20.7 211 59-307 235-476 (1185)
301 KOG1915 Cell cycle control pro 82.6 8 0.00017 42.4 9.6 101 208-308 445-588 (677)
302 COG0790 FOG: TPR repeat, SEL1 82.1 29 0.00063 34.4 13.2 85 207-307 127-222 (292)
303 KOG4814 Uncharacterized conser 82.1 2.3 5E-05 47.8 5.5 68 237-306 357-424 (872)
304 KOG2300 Uncharacterized conser 81.9 21 0.00045 39.4 12.4 75 232-308 443-517 (629)
305 PF12309 KBP_C: KIF-1 binding 81.4 78 0.0017 33.6 19.9 114 232-374 227-371 (371)
306 cd02683 MIT_1 MIT: domain cont 81.3 14 0.0003 30.4 8.6 37 276-312 6-42 (77)
307 PF04910 Tcf25: Transcriptiona 79.8 15 0.00033 38.7 10.6 98 207-304 8-131 (360)
308 cd09245 BRO1_UmRIM23-like Prot 79.7 46 0.001 35.8 14.4 33 274-306 294-326 (413)
309 cd02656 MIT MIT: domain contai 79.7 13 0.00029 29.7 8.0 35 277-311 7-41 (75)
310 cd02681 MIT_calpain7_1 MIT: do 79.5 26 0.00056 28.8 9.7 33 234-266 6-38 (76)
311 cd00632 Prefoldin_beta Prefold 78.3 43 0.00093 28.8 11.3 67 243-315 18-84 (105)
312 KOG3060 Uncharacterized conser 78.1 13 0.00027 37.8 8.8 89 209-305 95-183 (289)
313 cd00890 Prefoldin Prefoldin is 78.0 3.8 8.3E-05 35.9 4.7 80 239-318 14-111 (129)
314 cd02680 MIT_calpain7_2 MIT: do 77.8 15 0.00032 30.3 7.7 27 282-308 12-38 (75)
315 PF07720 TPR_3: Tetratricopept 77.3 6.2 0.00014 27.7 4.7 29 67-95 2-32 (36)
316 PF04781 DUF627: Protein of un 77.2 9 0.00019 33.9 6.7 94 207-305 10-107 (111)
317 COG0790 FOG: TPR repeat, SEL1 77.2 80 0.0017 31.2 16.8 63 233-306 186-267 (292)
318 cd02678 MIT_VPS4 MIT: domain c 76.9 21 0.00045 28.9 8.4 36 276-311 6-41 (75)
319 smart00745 MIT Microtubule Int 76.7 19 0.00041 28.8 8.1 35 276-310 8-42 (77)
320 KOG0508 Ankyrin repeat protein 76.3 2.1 4.5E-05 46.5 2.9 72 218-289 320-392 (615)
321 PF10373 EST1_DNA_bind: Est1 D 76.0 4.7 0.0001 39.5 5.3 59 253-319 1-62 (278)
322 COG2909 MalT ATP-dependent tra 75.8 85 0.0018 36.9 15.5 70 234-307 580-649 (894)
323 PF10579 Rapsyn_N: Rapsyn N-te 75.5 8.3 0.00018 32.2 5.7 57 65-126 5-61 (80)
324 KOG2796 Uncharacterized conser 75.3 30 0.00065 35.5 10.6 65 233-305 251-315 (366)
325 PF11207 DUF2989: Protein of u 75.2 15 0.00033 35.9 8.3 74 217-295 123-197 (203)
326 PF05377 FlaC_arch: Flagella a 74.9 6.6 0.00014 30.5 4.6 28 348-375 15-42 (55)
327 KOG3081 Vesicle coat complex C 74.4 16 0.00034 37.4 8.4 85 207-299 173-264 (299)
328 PF05843 Suf: Suppressor of fo 73.5 31 0.00067 34.8 10.5 90 207-308 50-139 (280)
329 cd02679 MIT_spastin MIT: domai 73.1 23 0.00049 29.5 7.7 36 236-271 10-45 (79)
330 KOG1550 Extracellular protein 72.4 10 0.00022 42.2 7.3 87 205-303 261-355 (552)
331 PF11817 Foie-gras_1: Foie gra 72.2 13 0.00029 36.8 7.4 55 251-307 155-209 (247)
332 PF14853 Fis1_TPR_C: Fis1 C-te 72.0 8.1 0.00018 29.6 4.5 31 235-265 2-32 (53)
333 PRK03947 prefoldin subunit alp 71.9 9.3 0.0002 34.5 5.7 73 242-316 24-116 (140)
334 cd09247 BRO1_Alix_like_2 Prote 71.1 29 0.00062 36.3 9.9 33 274-306 251-283 (346)
335 COG2909 MalT ATP-dependent tra 70.9 1.1E+02 0.0024 36.1 14.9 79 207-290 472-551 (894)
336 KOG4507 Uncharacterized conser 70.8 9 0.0002 42.9 6.2 63 236-306 644-706 (886)
337 COG3118 Thioredoxin domain-con 70.7 32 0.00068 35.6 9.7 87 206-299 147-259 (304)
338 COG3629 DnrI DNA-binding trans 70.1 30 0.00065 35.4 9.4 65 233-305 152-216 (280)
339 PF05053 Menin: Menin; InterP 69.4 47 0.001 37.2 11.2 86 217-307 262-349 (618)
340 PRK13184 pknD serine/threonine 68.9 17 0.00037 43.1 8.3 100 205-306 480-582 (932)
341 KOG3081 Vesicle coat complex C 68.6 82 0.0018 32.4 11.9 97 208-317 152-248 (299)
342 COG2976 Uncharacterized protei 68.3 27 0.00059 34.1 8.2 65 232-301 87-151 (207)
343 KOG4507 Uncharacterized conser 66.8 61 0.0013 36.7 11.4 50 69-124 215-265 (886)
344 KOG2709 Uncharacterized conser 66.5 10 0.00022 40.8 5.3 79 233-321 21-103 (560)
345 KOG2053 Mitochondrial inherita 66.5 18 0.00038 42.3 7.5 87 207-308 23-109 (932)
346 cd09244 BRO1_Rhophilin Protein 66.3 1.8E+02 0.0039 30.7 15.8 36 274-309 242-277 (350)
347 PF12739 TRAPPC-Trs85: ER-Golg 66.2 1.9E+02 0.0041 30.9 17.8 49 70-121 212-261 (414)
348 COG4976 Predicted methyltransf 66.0 6.6 0.00014 39.4 3.6 57 244-308 5-61 (287)
349 KOG2610 Uncharacterized conser 65.8 85 0.0018 33.4 11.7 57 234-298 175-231 (491)
350 PF08311 Mad3_BUB1_I: Mad3/BUB 65.4 12 0.00026 33.4 5.0 79 213-303 46-126 (126)
351 KOG2561 Adaptor protein NUB1, 65.0 45 0.00098 36.4 9.7 98 207-308 177-299 (568)
352 KOG3783 Uncharacterized conser 64.9 22 0.00049 39.3 7.7 73 233-306 448-521 (546)
353 KOG2460 Signal recognition par 64.7 26 0.00056 38.8 8.1 94 249-376 379-488 (593)
354 cd00584 Prefoldin_alpha Prefol 64.6 18 0.00038 32.1 5.9 80 239-318 14-111 (129)
355 KOG2047 mRNA splicing factor [ 64.2 20 0.00042 40.8 7.1 93 216-309 403-503 (835)
356 KOG2422 Uncharacterized conser 63.7 1.3E+02 0.0027 34.1 13.1 94 207-315 356-458 (665)
357 smart00671 SEL1 Sel1-like repe 63.1 13 0.00027 24.6 3.7 28 277-304 2-33 (36)
358 COG3947 Response regulator con 62.8 35 0.00075 35.5 8.1 67 237-311 282-348 (361)
359 PF15015 NYD-SP12_N: Spermatog 62.5 58 0.0013 35.5 10.0 61 238-306 232-292 (569)
360 PF14561 TPR_20: Tetratricopep 62.5 26 0.00056 29.5 6.2 54 66-119 22-90 (90)
361 KOG1915 Cell cycle control pro 61.9 44 0.00095 36.9 9.1 79 215-301 88-166 (677)
362 KOG4814 Uncharacterized conser 61.7 36 0.00079 38.7 8.6 70 230-307 390-459 (872)
363 PF14561 TPR_20: Tetratricopep 61.5 14 0.00031 31.1 4.4 34 231-264 19-52 (90)
364 PF04053 Coatomer_WDAD: Coatom 60.7 15 0.00032 40.0 5.5 86 206-296 322-409 (443)
365 PF08238 Sel1: Sel1 repeat; I 60.6 14 0.00031 24.9 3.6 29 276-304 1-36 (39)
366 TIGR00293 prefoldin, archaeal 60.4 6.8 0.00015 34.6 2.4 45 242-289 17-61 (126)
367 PF09311 Rab5-bind: Rabaptin-l 60.3 25 0.00055 33.4 6.4 47 61-107 135-181 (181)
368 KOG0250 DNA repair protein RAD 60.3 1.6E+02 0.0034 35.6 13.8 33 347-379 401-433 (1074)
369 cd02684 MIT_2 MIT: domain cont 59.2 26 0.00057 28.6 5.5 35 278-312 8-42 (75)
370 KOG0508 Ankyrin repeat protein 58.8 4.9 0.00011 43.8 1.4 107 207-313 260-374 (615)
371 PF15469 Sec5: Exocyst complex 58.6 36 0.00077 31.9 7.1 50 207-268 71-120 (182)
372 PF07720 TPR_3: Tetratricopept 56.8 26 0.00057 24.6 4.4 24 277-300 2-25 (36)
373 TIGR03504 FimV_Cterm FimV C-te 56.6 14 0.00031 27.2 3.2 26 237-262 2-27 (44)
374 PF08424 NRDE-2: NRDE-2, neces 56.6 1.5E+02 0.0032 30.6 11.8 63 245-307 113-185 (321)
375 KOG4603 TBP-1 interacting prot 56.5 39 0.00085 32.2 6.7 23 250-272 42-64 (201)
376 COG5159 RPN6 26S proteasome re 56.1 1.6E+02 0.0035 30.7 11.6 64 236-301 127-190 (421)
377 cd02677 MIT_SNX15 MIT: domain 54.7 23 0.0005 29.0 4.5 35 277-311 7-41 (75)
378 TIGR03504 FimV_Cterm FimV C-te 54.4 22 0.00047 26.2 3.8 25 70-94 3-27 (44)
379 TIGR02710 CRISPR-associated pr 54.0 3E+02 0.0066 29.5 13.7 31 65-95 129-159 (380)
380 PF07079 DUF1347: Protein of u 53.4 91 0.002 34.3 9.7 48 66-122 462-509 (549)
381 cd09243 BRO1_Brox_like Protein 53.3 73 0.0016 33.7 9.0 37 273-309 245-281 (353)
382 PF09613 HrpB1_HrpK: Bacterial 53.3 72 0.0016 30.1 8.0 70 208-292 25-94 (160)
383 PRK13184 pknD serine/threonine 51.7 1.6E+02 0.0034 35.3 12.2 142 69-308 478-623 (932)
384 KOG3364 Membrane protein invol 51.2 44 0.00095 31.0 6.0 58 207-264 34-101 (149)
385 PRK10941 hypothetical protein; 51.0 1E+02 0.0022 31.3 9.4 66 233-306 180-245 (269)
386 PF04871 Uso1_p115_C: Uso1 / p 50.6 1.2E+02 0.0026 27.7 8.8 27 350-376 80-106 (136)
387 KOG4014 Uncharacterized conser 50.3 1.9E+02 0.0042 28.4 10.4 71 207-289 87-157 (248)
388 PF07079 DUF1347: Protein of u 49.7 44 0.00095 36.7 6.6 70 234-312 460-545 (549)
389 PF10168 Nup88: Nuclear pore c 49.1 1.4E+02 0.0031 34.6 11.1 25 352-376 598-622 (717)
390 KOG0546 HSP90 co-chaperone CPR 49.1 19 0.00042 38.0 3.8 63 234-304 275-337 (372)
391 PF14863 Alkyl_sulf_dimr: Alky 49.0 79 0.0017 29.0 7.5 53 66-126 70-122 (141)
392 COG1730 GIM5 Predicted prefold 48.8 31 0.00067 32.0 4.8 26 246-271 28-53 (145)
393 KOG0738 AAA+-type ATPase [Post 48.7 58 0.0013 35.2 7.3 35 279-313 9-43 (491)
394 PF12739 TRAPPC-Trs85: ER-Golg 48.6 73 0.0016 34.1 8.3 71 236-308 210-287 (414)
395 PF12795 MscS_porin: Mechanose 48.5 2.3E+02 0.0049 27.9 11.3 51 250-322 16-66 (240)
396 PF10579 Rapsyn_N: Rapsyn N-te 48.0 1.2E+02 0.0025 25.5 7.5 66 235-305 7-72 (80)
397 KOG2041 WD40 repeat protein [G 47.6 1.1E+02 0.0023 35.6 9.4 55 231-285 793-868 (1189)
398 PF12854 PPR_1: PPR repeat 47.0 33 0.00071 23.3 3.6 26 234-259 7-32 (34)
399 KOG1920 IkappaB kinase complex 47.0 4.6E+02 0.01 32.2 14.8 26 240-265 958-983 (1265)
400 PRK13729 conjugal transfer pil 46.7 2E+02 0.0044 31.7 11.2 11 443-453 191-201 (475)
401 PF06120 Phage_HK97_TLTM: Tail 46.6 82 0.0018 32.7 7.9 65 292-377 40-104 (301)
402 smart00386 HAT HAT (Half-A-TPR 46.5 44 0.00094 21.0 4.1 31 80-118 1-31 (33)
403 COG1579 Zn-ribbon protein, pos 46.3 3.2E+02 0.007 27.4 14.3 29 292-320 87-115 (239)
404 KOG3824 Huntingtin interacting 45.7 52 0.0011 34.6 6.2 48 64-119 114-161 (472)
405 PF10805 DUF2730: Protein of u 45.4 2E+02 0.0044 24.9 10.2 60 293-375 34-93 (106)
406 cd09034 BRO1_Alix_like Protein 45.0 3.6E+02 0.0079 27.6 13.9 35 233-267 250-284 (345)
407 COG3014 Uncharacterized protei 44.6 1.3E+02 0.0029 32.0 9.0 79 240-318 64-167 (449)
408 KOG1310 WD40 repeat protein [G 43.8 45 0.00097 37.3 5.7 83 219-309 393-478 (758)
409 PF04102 SlyX: SlyX; InterPro 43.7 1E+02 0.0022 24.6 6.5 26 349-374 27-52 (69)
410 PRK10869 recombination and rep 43.4 2.8E+02 0.0061 31.0 12.1 26 350-375 344-369 (553)
411 PF13805 Pil1: Eisosome compon 43.4 3.8E+02 0.0083 27.4 15.3 80 213-320 78-157 (271)
412 PRK13182 racA polar chromosome 42.5 1.6E+02 0.0034 28.1 8.6 70 292-381 83-152 (175)
413 PRK10869 recombination and rep 42.5 2.4E+02 0.0051 31.6 11.4 39 277-315 272-310 (553)
414 KOG0276 Vesicle coat complex C 42.2 75 0.0016 36.1 7.2 88 204-296 639-728 (794)
415 PF12063 DUF3543: Domain of un 42.0 3.7E+02 0.0079 26.8 12.9 103 243-375 114-235 (238)
416 PF07544 Med9: RNA polymerase 42.0 2E+02 0.0043 23.8 8.8 28 295-322 22-49 (83)
417 PF07106 TBPIP: Tat binding pr 41.7 1.6E+02 0.0034 27.4 8.5 59 295-376 80-138 (169)
418 PF02996 Prefoldin: Prefoldin 41.3 61 0.0013 28.0 5.3 23 292-314 75-97 (120)
419 KOG4797 Transcriptional regula 41.2 1.4E+02 0.003 26.5 7.3 26 350-375 63-88 (123)
420 KOG3807 Predicted membrane pro 41.1 1.9E+02 0.0041 30.8 9.5 33 75-115 193-225 (556)
421 PF15015 NYD-SP12_N: Spermatog 41.1 99 0.0021 33.8 7.6 67 239-305 181-257 (569)
422 PF01920 Prefoldin_2: Prefoldi 41.0 24 0.00053 29.6 2.7 74 235-314 9-82 (106)
423 COG3883 Uncharacterized protei 41.0 1.5E+02 0.0033 30.1 8.7 61 293-378 37-97 (265)
424 PF02561 FliS: Flagellar prote 41.0 1E+02 0.0022 27.1 6.8 44 63-106 26-69 (122)
425 COG3014 Uncharacterized protei 40.9 1.9E+02 0.0042 30.8 9.5 33 233-265 124-156 (449)
426 PTZ00009 heat shock 70 kDa pro 40.7 3.1E+02 0.0068 31.2 12.2 42 350-398 570-619 (653)
427 PF07926 TPR_MLP1_2: TPR/MLP1/ 40.6 2.7E+02 0.0058 24.9 10.4 23 354-376 98-120 (132)
428 PF09670 Cas_Cas02710: CRISPR- 40.3 2.4E+02 0.0053 29.9 10.6 62 239-306 136-199 (379)
429 KOG1310 WD40 repeat protein [G 39.4 1.3E+02 0.0028 33.9 8.3 50 64-121 372-421 (758)
430 PF12753 Nro1: Nuclear pore co 39.4 26 0.00055 37.6 3.0 55 252-308 329-387 (404)
431 PF01166 TSC22: TSC-22/dip/bun 39.4 38 0.00083 26.7 3.2 36 350-393 10-45 (59)
432 PF12309 KBP_C: KIF-1 binding 39.1 5E+02 0.011 27.6 17.1 43 79-121 188-235 (371)
433 PF10255 Paf67: RNA polymerase 39.0 1.9E+02 0.004 31.3 9.4 90 206-298 135-239 (404)
434 PRK11637 AmiB activator; Provi 38.7 5.2E+02 0.011 27.6 19.7 7 419-425 298-304 (428)
435 KOG0971 Microtubule-associated 38.4 5.5E+02 0.012 30.8 13.3 60 245-311 955-1018(1243)
436 KOG3824 Huntingtin interacting 38.2 40 0.00086 35.4 4.1 52 246-305 128-179 (472)
437 KOG0686 COP9 signalosome, subu 38.0 59 0.0013 35.1 5.4 92 206-301 163-254 (466)
438 TIGR02561 HrpB1_HrpK type III 38.0 1.2E+02 0.0026 28.5 6.8 71 207-292 24-94 (153)
439 PF02064 MAS20: MAS20 protein 37.8 1.1E+02 0.0024 27.5 6.4 32 64-95 61-92 (121)
440 PRK09343 prefoldin subunit bet 37.4 3E+02 0.0064 24.4 10.3 70 240-315 23-92 (121)
441 PF12854 PPR_1: PPR repeat 37.1 57 0.0012 22.1 3.5 25 277-301 8-32 (34)
442 PF05010 TACC: Transforming ac 36.6 3.6E+02 0.0079 26.4 10.3 23 348-370 183-205 (207)
443 PF13281 DUF4071: Domain of un 36.3 5.3E+02 0.012 27.6 12.3 36 79-121 195-230 (374)
444 PF08626 TRAPPC9-Trs120: Trans 36.2 54 0.0012 40.1 5.5 56 233-290 241-296 (1185)
445 KOG3807 Predicted membrane pro 36.1 5.7E+02 0.012 27.4 12.8 37 230-268 214-250 (556)
446 KOG3677 RNA polymerase I-assoc 35.9 26 0.00056 37.9 2.4 26 280-305 276-301 (525)
447 KOG2114 Vacuolar assembly/sort 35.6 1.8E+02 0.0038 34.3 9.0 50 214-263 348-397 (933)
448 PF05168 HEPN: HEPN domain; I 35.4 1.1E+02 0.0025 25.3 6.0 37 62-98 4-40 (118)
449 PHA02562 46 endonuclease subun 35.2 3.7E+02 0.0081 29.4 11.5 9 93-101 153-161 (562)
450 PRK04654 sec-independent trans 35.0 4.5E+02 0.0097 26.0 10.5 29 290-318 23-51 (214)
451 KOG3771 Amphiphysin [Intracell 34.5 6.6E+02 0.014 27.7 14.7 108 235-373 123-230 (460)
452 TIGR02710 CRISPR-associated pr 34.5 4.4E+02 0.0096 28.3 11.3 72 237-309 174-279 (380)
453 PF01535 PPR: PPR repeat; Int 34.4 65 0.0014 20.1 3.4 26 236-261 2-27 (31)
454 PHA01750 hypothetical protein 34.2 1.9E+02 0.0042 23.4 6.4 24 352-375 47-70 (75)
455 TIGR02338 gimC_beta prefoldin, 33.7 3.1E+02 0.0068 23.6 9.5 71 240-316 19-89 (110)
456 PF14346 DUF4398: Domain of un 33.3 1E+02 0.0022 26.2 5.3 35 61-95 40-74 (103)
457 PF10373 EST1_DNA_bind: Est1 D 33.2 78 0.0017 30.8 5.2 62 212-288 1-62 (278)
458 TIGR03007 pepcterm_ChnLen poly 32.8 5.3E+02 0.012 27.9 12.1 39 250-288 252-290 (498)
459 PF10952 DUF2753: Protein of u 32.8 1.9E+02 0.004 26.6 6.9 45 68-112 3-47 (140)
460 PF09712 PHA_synth_III_E: Poly 32.5 5.7E+02 0.012 26.3 12.9 22 353-374 271-292 (293)
461 PRK09039 hypothetical protein; 32.4 6.1E+02 0.013 26.6 15.8 36 251-286 115-150 (343)
462 TIGR00756 PPR pentatricopeptid 32.2 87 0.0019 19.7 3.8 26 236-261 2-27 (35)
463 cd07623 BAR_SNX1_2 The Bin/Amp 32.0 4.9E+02 0.011 25.4 14.8 28 349-376 151-178 (224)
464 PRK03947 prefoldin subunit alp 32.0 2E+02 0.0043 25.8 7.3 23 298-320 91-113 (140)
465 COG1196 Smc Chromosome segrega 31.4 6E+02 0.013 31.1 13.2 9 307-315 757-765 (1163)
466 PF13281 DUF4071: Domain of un 31.3 1.7E+02 0.0037 31.3 7.6 74 207-295 196-278 (374)
467 PF15188 CCDC-167: Coiled-coil 31.2 2.4E+02 0.0052 23.9 7.0 58 296-375 7-64 (85)
468 KOG2880 SMAD6 interacting prot 31.0 6.9E+02 0.015 26.8 14.2 44 232-276 33-76 (424)
469 PRK04406 hypothetical protein; 30.4 3.1E+02 0.0066 22.5 7.5 20 301-320 4-23 (75)
470 smart00777 Mad3_BUB1_I Mad3/BU 30.4 2.3E+02 0.005 25.5 7.3 76 213-301 46-124 (125)
471 cd07614 BAR_Endophilin_A2 The 30.3 5.5E+02 0.012 25.4 12.3 46 78-124 58-103 (223)
472 PF08969 USP8_dimer: USP8 dime 30.3 1.6E+02 0.0035 25.5 6.2 76 231-319 35-110 (115)
473 PF09177 Syntaxin-6_N: Syntaxi 30.3 3.3E+02 0.0072 22.9 8.9 61 292-374 37-97 (97)
474 KOG2422 Uncharacterized conser 30.2 4.3E+02 0.0093 30.1 10.5 96 206-301 251-367 (665)
475 PF02388 FemAB: FemAB family; 30.1 2.3E+02 0.005 30.2 8.5 57 291-376 239-295 (406)
476 PF13041 PPR_2: PPR repeat fam 30.0 1.1E+02 0.0023 22.1 4.3 28 234-261 3-30 (50)
477 KOG0546 HSP90 co-chaperone CPR 30.0 96 0.0021 32.9 5.4 37 60-96 216-252 (372)
478 KOG1997 PH domain-containing p 29.9 2.3E+02 0.005 35.4 9.0 85 214-299 1162-1248(1518)
479 PF09311 Rab5-bind: Rabaptin-l 29.8 1.3E+02 0.0029 28.5 6.0 46 230-275 136-181 (181)
480 PRK05685 fliS flagellar protei 29.6 2.7E+02 0.0059 25.0 7.7 43 63-105 32-74 (132)
481 KOG2908 26S proteasome regulat 29.5 6E+02 0.013 27.1 11.0 94 206-304 88-182 (380)
482 COG5091 SGT1 Suppressor of G2 29.5 68 0.0015 33.0 4.1 58 208-266 54-111 (368)
483 KOG4056 Translocase of outer m 29.0 1.9E+02 0.0041 26.8 6.4 34 62-95 77-110 (143)
484 KOG0739 AAA+-type ATPase [Post 29.0 7.2E+02 0.016 26.4 11.7 21 246-266 22-42 (439)
485 PRK04863 mukB cell division pr 28.8 9.6E+02 0.021 30.5 14.4 33 233-265 309-341 (1486)
486 KOG4322 Anaphase-promoting com 28.7 1.6E+02 0.0035 32.1 6.9 92 210-304 370-470 (482)
487 KOG0686 COP9 signalosome, subu 28.7 4.1E+02 0.0089 29.0 9.8 56 233-293 149-204 (466)
488 PF04190 DUF410: Protein of un 28.7 6E+02 0.013 25.4 14.1 34 225-258 81-114 (260)
489 PF04190 DUF410: Protein of un 28.5 6.1E+02 0.013 25.3 14.2 37 62-98 5-42 (260)
490 PF07889 DUF1664: Protein of u 28.4 4.5E+02 0.0098 23.8 8.9 25 350-374 99-123 (126)
491 COG5091 SGT1 Suppressor of G2 28.3 58 0.0013 33.5 3.3 59 247-307 52-110 (368)
492 KOG2997 F-box protein FBX9 [Ge 28.1 1.1E+02 0.0024 32.1 5.4 49 56-112 9-57 (366)
493 PRK14011 prefoldin subunit alp 28.1 1.1E+02 0.0023 28.4 4.8 35 281-315 75-109 (144)
494 cd09248 BRO1_Rhophilin_1 Prote 28.1 7.8E+02 0.017 26.5 16.7 152 64-318 104-332 (384)
495 COG4976 Predicted methyltransf 28.1 72 0.0016 32.2 3.9 53 207-266 9-61 (287)
496 cd09247 BRO1_Alix_like_2 Prote 27.8 4.9E+02 0.011 27.2 10.3 36 233-268 252-287 (346)
497 PRK11637 AmiB activator; Provi 27.7 2.9E+02 0.0063 29.6 8.8 25 294-318 75-99 (428)
498 PRK09039 hypothetical protein; 27.7 7.3E+02 0.016 26.0 11.8 24 240-263 69-92 (343)
499 TIGR00634 recN DNA repair prot 27.5 5.6E+02 0.012 28.6 11.3 25 350-374 349-373 (563)
500 KOG0739 AAA+-type ATPase [Post 27.4 90 0.002 32.8 4.6 36 62-97 6-41 (439)
No 1
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=3.7e-24 Score=216.42 Aligned_cols=273 Identities=27% Similarity=0.347 Sum_probs=187.6
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCc--CCC
Q 011692 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKE--GDS 139 (479)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~--~e~ 139 (479)
.-.++..|+.+|++++.+++|+.|++.|++|+++..++||+.|.+|+++||+||++||+++++++.||||..... ++.
T Consensus 37 ~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~nale~~~~eE~ 116 (400)
T KOG4563|consen 37 KEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGNALETESAEEE 116 (400)
T ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccch
Confidence 345688999999999999999999999999999999999999999999999999999999999999999976321 110
Q ss_pred CC---CCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHH
Q 011692 140 QQ---GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKML 216 (479)
Q Consensus 140 ~~---~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~L 216 (479)
.- .+..++... +. -.+++- | .+......+. .|.+..++....+++++.+..+|+.|
T Consensus 117 e~~~s~e~s~e~nn---~~--------e~vee~---r-----~~~a~~~kek--eEae~~ed~~~~e~e~dt~k~~wE~L 175 (400)
T KOG4563|consen 117 EVEKSGELSDEENN---NK--------ETVEEY---R-----YGLALLEKEK--EEAEKTEDKPAAEDEVDTMKLAWEEL 175 (400)
T ss_pred hhccccccchhhhc---cH--------HHHHHH---H-----hhhhhhhhhh--hhcccccCCccccchhhhhhhhhhhh
Confidence 00 000000000 00 000000 0 0000000000 01111122233345668999999999
Q ss_pred HHHHHHHHHhcCC---------------cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHH
Q 011692 217 DVARAIAEKHWGD---------------SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSR-HIAELNF 280 (479)
Q Consensus 217 e~Ar~Iyek~~~~---------------~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r-~iAea~~ 280 (479)
+..|+|-.+.... .+.+++.+..+|.-.+..++|++|+.+..++|.|.+-++++.+| .++..+.
T Consensus 176 e~sr~~~~~~~~s~~~~qe~k~~l~~~wdle~~~~l~~~~a~gias~k~eqal~d~ee~~sIs~~~l~~esrk~~a~~~~ 255 (400)
T KOG4563|consen 176 ETSRVIADKKSESLEAEQEGKGDLILGWDLELADVLKLLGAHGIASGKYEQALEDAEEALSISRVDLPEESRKEIAQTVD 255 (400)
T ss_pred hhhccccchhhhccccccccccchhhhhccccchhhhccCCccccccchhhhhHHHHHHhhhhhccccHHHHHHHhhhhh
Confidence 9999987554221 13345666666666668899999999999999999999999999 7999999
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccccccccccccccccchhhhHHHHHHHHHH
Q 011692 281 RICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLS 360 (479)
Q Consensus 281 ~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Eieelk 360 (479)
.|+........+++...+| ..++..|-.++++++.....+. |. .-.....+.++++|+
T Consensus 256 il~~~~~~s~~~Ee~~~~~----~~~KnvLi~~e~Ev~~~~~k~~-------d~-----------~~~es~~~~~~~ele 313 (400)
T KOG4563|consen 256 ILCSAAESSLEREEIESSF----SDTKNVLIEREREVKDDLEKGV-------DD-----------NFRESECLSELKELE 313 (400)
T ss_pred hccccccchhHHHHHHHHH----HHhhhHHHHHHHhhcccccccc-------cc-----------cccchhHHHhhhhHH
Confidence 9999887776666665555 4555555555665554432110 10 113467889999999
Q ss_pred hhHHHHHHHHHHHHHhh
Q 011692 361 GLCGDLEKKLEDLQQVA 377 (479)
Q Consensus 361 ~ll~dl~~KieDlk~~~ 377 (479)
++||.|+++|-|++..+
T Consensus 314 e~ip~leq~i~d~k~~A 330 (400)
T KOG4563|consen 314 EMIPELEQAILDAKASA 330 (400)
T ss_pred hHHHHHHHHHHHhccch
Confidence 99999999999998753
No 2
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.74 E-value=7.2e-17 Score=173.46 Aligned_cols=164 Identities=22% Similarity=0.154 Sum_probs=150.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCC
Q 011692 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQG 142 (479)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~ 142 (479)
+..+.-+...|..|..+++|.+|+.+|.+||.|+.+.||++||.+|.+|++++.+|+..
T Consensus 238 l~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~--------------------- 296 (508)
T KOG1840|consen 238 LVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQ--------------------- 296 (508)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc---------------------
Confidence 34466666799999999999999999999999999999999999999999999999653
Q ss_pred CCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHH
Q 011692 143 SDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI 222 (479)
Q Consensus 143 ~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~I 222 (479)
++|..|...++.|+.|
T Consensus 297 ----------------------------------------------------------------GKf~EA~~~~e~Al~I 312 (508)
T KOG1840|consen 297 ----------------------------------------------------------------GKFAEAEEYCERALEI 312 (508)
T ss_pred ----------------------------------------------------------------CChHHHHHHHHHHHHH
Confidence 5678899999999999
Q ss_pred HHHhcC-CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011692 223 AEKHWG-DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 301 (479)
Q Consensus 223 yek~~~-~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ek 301 (479)
+++.++ .+++++..+.+++.++..+++|++|+..|+++|+|....+|++|+.+|.++.|||.+|.++|+|++|.++|++
T Consensus 313 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ 392 (508)
T KOG1840|consen 313 YEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKK 392 (508)
T ss_pred HHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 999655 4688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 011692 302 AISVCKSRVQ 311 (479)
Q Consensus 302 AL~I~k~rl~ 311 (479)
||.+.+...+
T Consensus 393 ai~~~~~~~~ 402 (508)
T KOG1840|consen 393 AIQILRELLG 402 (508)
T ss_pred HHHHHHhccc
Confidence 9999865443
No 3
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.62 E-value=2.7e-14 Score=153.74 Aligned_cols=159 Identities=18% Similarity=0.134 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
...+..+|..+..+|+|+.|+..|.+|++++.+.+|-.||.++....+||.+|..+
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~------------------------ 254 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL------------------------ 254 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh------------------------
Confidence 55666799999999999999999999999999999999999999999999999875
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
+.|..|..+|+.|+.|++.
T Consensus 255 -------------------------------------------------------------~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 255 -------------------------------------------------------------GKYDEAVNLYEEALTIREE 273 (508)
T ss_pred -------------------------------------------------------------ccHHHHHHHHHHHHHHHHH
Confidence 3567788999999999999
Q ss_pred hcC-CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 226 HWG-DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 226 ~~~-~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
..+ .++.+|.+|++||..|..+|+|++|..+|++|++|++++++..|+.++..|.+++.++...++|++|+.+|+++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 887 5799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 011692 305 VCKSR 309 (479)
Q Consensus 305 I~k~r 309 (479)
|++..
T Consensus 354 i~~~~ 358 (508)
T KOG1840|consen 354 IYLDA 358 (508)
T ss_pred HHHhh
Confidence 98843
No 4
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.51 E-value=6.8e-14 Score=112.81 Aligned_cols=78 Identities=26% Similarity=0.298 Sum_probs=72.8
Q ss_pred cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH
Q 011692 230 SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 308 (479)
Q Consensus 230 ~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~ 308 (479)
|+.++.+|++||.+|..+|+|++|+.+|++||.| .+.+|++|+.++.++++||.+|..+|++++|+.+|++|++|+++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 4678999999999999999999999999999999 77789999999999999999999999999999999999999874
No 5
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.40 E-value=7e-13 Score=142.07 Aligned_cols=56 Identities=14% Similarity=0.126 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP 128 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv 128 (479)
.|..+.++|..+..+|+.-.|+.+|.+|+.| .|-..++|+++|.+|-+..+.+..|
T Consensus 217 fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--------dP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 217 FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--------DPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred eeeeehhcchHHhhcchHHHHHHHHHHhhcC--------CCcchHHHhhHHHHHHHHhcchHHH
Confidence 4777888888888888888888888888887 7888888888888888877665543
No 6
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.27 E-value=4.8e-11 Score=128.25 Aligned_cols=167 Identities=20% Similarity=0.222 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCC-cCCCCCCCcCCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEAD-PLVSVPKKEGDSQQGS 143 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esd-vLG~~~~~~~e~~~~~ 143 (479)
.-+.+.++|.++-..|+..+|++||.+||.+ .|-.|++.+++|.++.+.+..+.. +|....
T Consensus 319 F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--------~p~hadam~NLgni~~E~~~~e~A~~ly~~a---------- 380 (966)
T KOG4626|consen 319 FPDAYNNLANALKDKGSVTEAVDCYNKALRL--------CPNHADAMNNLGNIYREQGKIEEATRLYLKA---------- 380 (966)
T ss_pred chHHHhHHHHHHHhccchHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhccchHHHHHHHHH----------
Confidence 3677888888888889999999999999988 677888999999988887544222 111000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
-..+++.+. + . -+.+.--...++|+.|...|..|+.|
T Consensus 381 -------l~v~p~~aa---------a-----~---------------------nNLa~i~kqqgnl~~Ai~~YkealrI- 417 (966)
T KOG4626|consen 381 -------LEVFPEFAA---------A-----H---------------------NNLASIYKQQGNLDDAIMCYKEALRI- 417 (966)
T ss_pred -------HhhChhhhh---------h-----h---------------------hhHHHHHHhcccHHHHHHHHHHHHhc-
Confidence 000111110 0 0 01111122347788888888887766
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
.|..|++|.++|.+|-++|+.+.|+.+|.+|+.|. |..|++|.|||.+|...|+..+||..|+.||
T Consensus 418 ------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n--------Pt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 418 ------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN--------PTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred ------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC--------cHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 56789999999999999999999999999999885 5569999999999999999999999999999
Q ss_pred HHH
Q 011692 304 SVC 306 (479)
Q Consensus 304 ~I~ 306 (479)
.+.
T Consensus 484 klk 486 (966)
T KOG4626|consen 484 KLK 486 (966)
T ss_pred ccC
Confidence 764
No 7
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.14 E-value=2.4e-09 Score=98.88 Aligned_cols=168 Identities=15% Similarity=0.085 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--CCCCCCCcCCCCC
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQ 141 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv--LG~~~~~~~e~~~ 141 (479)
..+..++.+|..++..|+|++|+.+|.+++++ +|..+.+++.+|.+++..++.+... +......
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------ 94 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL------ 94 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------
Confidence 34788899999999999999999999999886 6888899999999998874432110 0000000
Q ss_pred CCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHH
Q 011692 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARA 221 (479)
Q Consensus 142 ~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~ 221 (479)
.+... . .. -..+...-..++++.|..+++.+..
T Consensus 95 ------------~~~~~-----------------~-~~-----------------~~~~~~~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 95 ------------NPNNG-----------------D-VL-----------------NNYGTFLCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred ------------CCCCH-----------------H-HH-----------------HHHHHHHHHcccHHHHHHHHHHHHh
Confidence 00000 0 00 0000000112345555555544442
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011692 222 IAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 301 (479)
Q Consensus 222 Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ek 301 (479)
.. ........+.++|.++...|+|++|+..|.+++.+.. ++ ..+++.+|.+|...+++++|+.+|++
T Consensus 128 ~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~---~~~~~~la~~~~~~~~~~~A~~~~~~ 194 (234)
T TIGR02521 128 DP-----LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-----QR---PESLLELAELYYLRGQYKDARAYLER 194 (234)
T ss_pred cc-----ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----CC---hHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11 1223455667777777777777777777777766521 22 45667777777777777777777777
Q ss_pred HHHH
Q 011692 302 AISV 305 (479)
Q Consensus 302 AL~I 305 (479)
++.+
T Consensus 195 ~~~~ 198 (234)
T TIGR02521 195 YQQT 198 (234)
T ss_pred HHHh
Confidence 6654
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.14 E-value=6.4e-10 Score=122.70 Aligned_cols=167 Identities=16% Similarity=0.078 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--CCCCCCCcCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQG 142 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv--LG~~~~~~~e~~~~ 142 (479)
.+..+..+|..++.+|+|++|+.+|.+++++ +|.+..+|+.+|.+++.+++.+... |-.+..
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-------- 393 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALK-------- 393 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------
Confidence 3556788899999999999999999999987 6888899999999998875543211 000000
Q ss_pred CCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHH
Q 011692 143 SDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI 222 (479)
Q Consensus 143 ~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~I 222 (479)
.++... .. .. ..+...-..++++.|...|+.++.+
T Consensus 394 ----------~~p~~~------~~--------~~---------------------~lg~~~~~~g~~~~A~~~~~kal~l 428 (615)
T TIGR00990 394 ----------LNSEDP------DI--------YY---------------------HRAQLHFIKGEFAQAGKDYQKSIDL 428 (615)
T ss_pred ----------hCCCCH------HH--------HH---------------------HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 000000 00 00 0000001124566666555555543
Q ss_pred HHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 011692 223 AEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKA 302 (479)
Q Consensus 223 yek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekA 302 (479)
.+....+|..||.++..+|+|++|+..|++++.+. |..+.+|+.+|.+|..+|+|++|+.+|++|
T Consensus 429 -------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~A 493 (615)
T TIGR00990 429 -------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF--------PEAPDVYNYYGELLLDQNKFDEAIEKFDTA 493 (615)
T ss_pred -------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 45567789999999999999999999999999764 233678999999999999999999999999
Q ss_pred HHHHH
Q 011692 303 ISVCK 307 (479)
Q Consensus 303 L~I~k 307 (479)
+.+..
T Consensus 494 l~l~p 498 (615)
T TIGR00990 494 IELEK 498 (615)
T ss_pred HhcCC
Confidence 98865
No 9
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.14 E-value=1.9e-09 Score=108.93 Aligned_cols=173 Identities=17% Similarity=0.032 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCC--CCCCCcCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLV--SVPKKEGDSQQG 142 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG--~~~~~~~e~~~~ 142 (479)
.+..++.+|..+...|++++|+..|.+|+++ .|..+.+|+++|.+++..++.+..+-- .+..
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~-------- 126 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE-------- 126 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------
Confidence 4677999999999999999999999999998 799999999999999998665432110 0000
Q ss_pred CCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHH
Q 011692 143 SDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI 222 (479)
Q Consensus 143 ~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~I 222 (479)
.++... .. .. ..+...-..+.++.|.+.|+.++.+
T Consensus 127 ----------l~P~~~---------~a-----~~---------------------~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 127 ----------LDPTYN---------YA-----YL---------------------NRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred ----------hCCCCH---------HH-----HH---------------------HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 000000 00 00 0000001235677777777766654
Q ss_pred HHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH----------HhcCC---------------C----Ch
Q 011692 223 AEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE----------RMVEP---------------D----SR 273 (479)
Q Consensus 223 yek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~----------~llg~---------------d----~r 273 (479)
. +.+ + ....| ..+....+++++|+..|.+++.... -.++. . .+
T Consensus 162 ~---P~~-~-~~~~~---~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~ 233 (296)
T PRK11189 162 D---PND-P-YRALW---LYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAE 233 (296)
T ss_pred C---CCC-H-HHHHH---HHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHH
Confidence 2 211 1 01111 1233445677777777766543210 00111 1 23
Q ss_pred hHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 274 HIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 274 ~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
..+++||+||.+|..+|++++|+.+|++|+++-
T Consensus 234 ~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 234 RLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 456899999999999999999999999999875
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.12 E-value=3.8e-09 Score=116.64 Aligned_cols=177 Identities=13% Similarity=0.145 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCC--CCCCCcCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLV--SVPKKEGDSQQGS 143 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG--~~~~~~~e~~~~~ 143 (479)
...+..+|..++..|+|++|+.+|.+++++ .|....+|+.+|.+++.+++.+..+-- ...+.
T Consensus 399 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-------- 462 (615)
T TIGR00990 399 PDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-------- 462 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence 678999999999999999999999999998 788999999999999988765432110 00000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
.+... .. .. ..+..--..++++.|.+.|+.|+.+.
T Consensus 463 ----------~P~~~------~~--------~~---------------------~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 463 ----------FPEAP------DV--------YN---------------------YYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred ----------CCCCh------HH--------HH---------------------HHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 00000 00 00 00001123468889999999988775
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
.+.......+...+...+.++...++|++|+..|+++|.+. +++ ..++..||.+|..+|++++|+.+|++|+
T Consensus 498 p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-----p~~---~~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 498 KETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-----PEC---DIAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred CccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-----CCc---HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44322223344445555555666899999999999999873 233 3578999999999999999999999999
Q ss_pred HHHHHHHH
Q 011692 304 SVCKSRVQ 311 (479)
Q Consensus 304 ~I~k~rl~ 311 (479)
++.+...+
T Consensus 570 ~l~~~~~e 577 (615)
T TIGR00990 570 ELARTEGE 577 (615)
T ss_pred HHhccHHH
Confidence 98765433
No 11
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.09 E-value=5e-09 Score=105.22 Aligned_cols=149 Identities=22% Similarity=0.204 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..+...|+.+...|+|++|.++|.+|.+++.. .|. ....|..|..-+.++..
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~-~~~-~~~Aa~~~~~Aa~~~k~------------------------- 87 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEK-LGD-KFEAAKAYEEAANCYKK------------------------- 87 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH-------------------------
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH-cCC-HHHHHHHHHHHHHHHHh-------------------------
Confidence 445555567777789999999999999998877 443 34566777776666533
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
.+++.|.++|+.|..+|.+
T Consensus 88 -------------------------------------------------------------~~~~~Ai~~~~~A~~~y~~ 106 (282)
T PF14938_consen 88 -------------------------------------------------------------GDPDEAIECYEKAIEIYRE 106 (282)
T ss_dssp -------------------------------------------------------------TTHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------------------hCHHHHHHHHHHHHHHHHh
Confidence 2566789999999999987
Q ss_pred hcCCcchHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALER-EDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~-g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
.. .....|.++..||.+|... ++|++|+.+|++|+.+.+..- .......++.+++.++...++|++|+..|++.+.
T Consensus 107 ~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 107 AG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp CT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 64 3456799999999999999 999999999999999998764 4566889999999999999999999999998765
Q ss_pred H
Q 011692 305 V 305 (479)
Q Consensus 305 I 305 (479)
.
T Consensus 184 ~ 184 (282)
T PF14938_consen 184 K 184 (282)
T ss_dssp T
T ss_pred H
Confidence 4
No 12
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.06 E-value=3.7e-11 Score=122.64 Aligned_cols=307 Identities=28% Similarity=0.281 Sum_probs=218.0
Q ss_pred Cccccc-------chhhhhcccCCC-ccccccccc-eeeeeeeeccccccccccCCCCC-------CCCccCCch-hhhH
Q 011692 1 MAEEEG-------SQTVAEQTAQPT-ETVGTTQAS-VEATMESVTVSGTESTCNNNCET-------SGAIADGER-EKTV 63 (479)
Q Consensus 1 ~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~l 63 (479)
|+|+++ +||++++...++ +|..++..| ++.|++...++|+...|+|+.+. ++..++..- .+++
T Consensus 1 ~~e~sataa~as~vktl~~~~de~A~~Ts~~n~~s~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~ 80 (400)
T KOG4563|consen 1 MVEESATAAEASDVKTLTEPEDEKATGTSTENLESQKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHL 80 (400)
T ss_pred CCccchhhhhhhhhhhccccccCcCCCCCCccchhhHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 788877 889999988887 899999888 99999999999999999998773 334444444 5688
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHH----HHHHHHHhhCCCChhHHH-----HHHHHHHHHHhhhhccCCcCCCCCC
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSR----ALEIRVSHYGELALECVN-----AYYQYGRALLYKAQEEADPLVSVPK 134 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~----Alei~~~~~Ge~~pe~A~-----~y~~YG~ALl~~ar~esdvLG~~~~ 134 (479)
+....|+-.|+.++..++++.++.++.. +.+..+.++|+...++-. -||+||.+++..++.+....|+.|.
T Consensus 81 e~~eal~~YGkslLela~~e~~VL~nale~~~~eE~e~~~s~e~s~e~nn~~e~vee~r~~~a~~~kekeEae~~ed~~~ 160 (400)
T KOG4563|consen 81 ETFEALFLYGKSLLELAKEESQVLGNALETESAEEEEVEKSGELSDEENNNKETVEEYRYGLALLEKEKEEAEKTEDKPA 160 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccccchhhccccccchhhhccHHHHHHHHhhhhhhhhhhhhcccccCCcc
Confidence 9999999999999999999999999999 999999999998887776 9999999999999999988888776
Q ss_pred CcCCCCCCCCCcccccccc-CCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCcccc-----ccccCcCh
Q 011692 135 KEGDSQQGSDKDDSVKNAV-NGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVA-----EADEDESD 208 (479)
Q Consensus 135 ~~~e~~~~~~~de~~~~~~-~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~-----~~~ed~~d 208 (479)
.+.+.++.....+...... ...... .+....+.++. +.....+.+..+.-... ...+....
T Consensus 161 ~e~e~dt~k~~wE~Le~sr~~~~~~~--~s~~~~qe~k~-----------~l~~~wdle~~~~l~~~~a~gias~k~eqa 227 (400)
T KOG4563|consen 161 AEDEVDTMKLAWEELETSRVIADKKS--ESLEAEQEGKG-----------DLILGWDLELADVLKLLGAHGIASGKYEQA 227 (400)
T ss_pred ccchhhhhhhhhhhhhhhccccchhh--hcccccccccc-----------chhhhhccccchhhhccCCccccccchhhh
Confidence 5433222221111111100 000000 00000000000 00000011111110000 11233456
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 011692 209 LDLAWKMLDVARAIAEKHWGDSMEKVDILSALA---EVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLC 285 (479)
Q Consensus 209 le~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LG---ev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~a 285 (479)
|..+|++|.++|++..... +..++..+.+|+ ......++...+..+|+-.|-+++..+.++.+..++..+..+.|
T Consensus 228 l~d~ee~~sIs~~~l~~es--rk~~a~~~~il~~~~~~s~~~Ee~~~~~~~~KnvLi~~e~Ev~~~~~k~~d~~~~es~~ 305 (400)
T KOG4563|consen 228 LEDAEEALSISRVDLPEES--RKEIAQTVDILCSAAESSLEREEIESSFSDTKNVLIEREREVKDDLEKGVDDNFRESEC 305 (400)
T ss_pred hHHHHHHhhhhhccccHHH--HHHHhhhhhhccccccchhHHHHHHHHHHHhhhHHHHHHHhhcccccccccccccchhH
Confidence 6666777777666654432 213565555554 45566677777888999999999999999999999999999999
Q ss_pred HHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011692 286 LEIGSKPQEAIPYCQKAISVCKSRVQRLLNEVKSLGE 322 (479)
Q Consensus 286 y~~~g~~eeAi~~~ekAL~I~k~rl~~l~~~l~~~~~ 322 (479)
..-....+++|.+++++|-.++.+..+|.+.++....
T Consensus 306 ~~~~~elee~ip~leq~i~d~k~~Ae~~ee~~~~aa~ 342 (400)
T KOG4563|consen 306 LSELKELEEMIPELEQAILDAKASAEQLEEEIKKAAG 342 (400)
T ss_pred HHhhhhHHhHHHHHHHHHHHhccchhhhhHHHHhhhh
Confidence 9999999999999999999999999999998876654
No 13
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.05 E-value=7.6e-09 Score=95.49 Aligned_cols=166 Identities=16% Similarity=0.097 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--CCCCCCCcCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQGS 143 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv--LG~~~~~~~e~~~~~ 143 (479)
+..+..+|..++.+|+|++|+.+|.+++++ +|....+++++|.+++..++.+... +-.....
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-------- 128 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTL--------NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED-------- 128 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------
Confidence 456778999999999999999999999987 5667789999999999876543210 0000000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
+ ... . ....- -..+...-..++++.|...|+.++.+
T Consensus 129 ----~-------~~~------~---------~~~~~-----------------~~l~~~~~~~g~~~~A~~~~~~~~~~- 164 (234)
T TIGR02521 129 ----P-------LYP------Q---------PARSL-----------------ENAGLCALKAGDFDKAEKYLTRALQI- 164 (234)
T ss_pred ----c-------ccc------c---------chHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 0 000 0 00000 00000011235667777766666543
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
.+.....+..||.++...|+|++|+..|++++.+. +.+ ...++.++.++...|++++|..+++...
T Consensus 165 ------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 165 ------DPQRPESLLELAELYYLRGQYKDARAYLERYQQTY-----NQT---AESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred ------CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 23456789999999999999999999999999872 222 4566788999999999999998887665
Q ss_pred HH
Q 011692 304 SV 305 (479)
Q Consensus 304 ~I 305 (479)
.+
T Consensus 231 ~~ 232 (234)
T TIGR02521 231 KL 232 (234)
T ss_pred hh
Confidence 43
No 14
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.99 E-value=2.8e-09 Score=110.70 Aligned_cols=98 Identities=16% Similarity=0.214 Sum_probs=72.6
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
+||+.|....+.-+.|-....+ ....-.+|.+||..+.-.|+|+.|+++|++.|.+..++- +-..-|...|.||.+|
T Consensus 209 Gdf~~ai~~H~~RL~ia~efGD-rAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg--~r~vEAQscYSLgNty 285 (639)
T KOG1130|consen 209 GDFDQAIHFHKLRLEIAQEFGD-RAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELG--NRTVEAQSCYSLGNTY 285 (639)
T ss_pred ccHHHHHHHHHHHHHHHHHhhh-HHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhc--chhHHHHHHHHhhhHH
Confidence 5677777776666666555532 222346788888888888888888888888888888774 2333577888888888
Q ss_pred HcCCChhHHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~k 307 (479)
.....|++||.|+++-|.|-+
T Consensus 286 tll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 286 TLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887764
No 15
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.99 E-value=3.1e-09 Score=85.52 Aligned_cols=60 Identities=32% Similarity=0.363 Sum_probs=52.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILER 266 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~ 266 (479)
++++.|.++|+.|+.++......++.++.++.+||.++..+|+|++|+.+|++|++|+++
T Consensus 19 ~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 19 GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 578899999999999955554456778999999999999999999999999999999875
No 16
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.98 E-value=4.9e-09 Score=95.28 Aligned_cols=84 Identities=20% Similarity=0.128 Sum_probs=71.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|+.+|+.++.+ .+...++|+.||.++...|+|++|+..|++++.+... -+.+|+++|.||
T Consensus 38 g~~~~A~~~~~~al~~-------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~--------~~~a~~~lg~~l 102 (144)
T PRK15359 38 GDYSRAVIDFSWLVMA-------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS--------HPEPVYQTGVCL 102 (144)
T ss_pred CCHHHHHHHHHHHHHc-------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--------CcHHHHHHHHHH
Confidence 4566677777766543 4567899999999999999999999999999987432 369999999999
Q ss_pred HcCCChhHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I 305 (479)
...|++++|+.+|++||.+
T Consensus 103 ~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 103 KMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999976
No 17
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.91 E-value=2.5e-09 Score=111.00 Aligned_cols=172 Identities=16% Similarity=0.111 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
+|+.--++|+.+-..|.|++|+-|..+-|.+.+++ |+. .--+.+||++|.+|..+|+. +|-...
T Consensus 94 EAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areL-gDr-v~e~RAlYNlgnvYhakGk~----~g~~~p---------- 157 (639)
T KOG1130|consen 94 EAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAREL-GDR-VLESRALYNLGNVYHAKGKC----TGLEAP---------- 157 (639)
T ss_pred cccccccccchhhhhcccchHHHHHHHHhHHHHHH-hHH-HhhhHHHhhhhhhhhhcccc----cCCCCh----------
Confidence 45666678889999999999999999999987664 432 23467899999999988654 221000
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
++. + +-.+|.-++|+.|.++|..-+.+.+
T Consensus 158 ------------------------------ee~------g---------------~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 158 ------------------------------EEK------G---------------AFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred ------------------------------hhc------c---------------cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 0001233688889888888887776
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
+.. +..-...+|-+||..|.-+|+|++||.+++.=|.|.+++-..- ..=.+|-|||.||.+.|+|+.|++||.+++.
T Consensus 187 ~lg-Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrA--aeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 187 KLG-DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRA--AERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred Hhh-hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHH--HHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 653 3455678999999999999999999999999999999875322 2336899999999999999999999998776
Q ss_pred HH
Q 011692 305 VC 306 (479)
Q Consensus 305 I~ 306 (479)
+-
T Consensus 264 LA 265 (639)
T KOG1130|consen 264 LA 265 (639)
T ss_pred HH
Confidence 53
No 18
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.90 E-value=3.3e-08 Score=91.19 Aligned_cols=125 Identities=16% Similarity=0.079 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCC
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~ 143 (479)
..+..++..|..++.+|+|++|+.+|.+|+.+. +.++..+.+|+++|.++..+
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~---------------------- 85 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSN---------------------- 85 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHc----------------------
Confidence 468889999999999999999999999999983 33556788999999999875
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
++++.|+..++.|+.+.
T Consensus 86 ---------------------------------------------------------------g~~~eA~~~~~~Al~~~ 102 (168)
T CHL00033 86 ---------------------------------------------------------------GEHTKALEYYFQALERN 102 (168)
T ss_pred ---------------------------------------------------------------CCHHHHHHHHHHHHHhC
Confidence 45677888898888774
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAEL 278 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea 278 (479)
.........++.+|.++|.++...|+|..|+.+|.+++.+.++.++.++...-.+
T Consensus 103 ~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~ 157 (168)
T CHL00033 103 PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEA 157 (168)
T ss_pred cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHH
Confidence 3333223456677777777777999999999999999999999988887544333
No 19
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.89 E-value=4.5e-08 Score=95.44 Aligned_cols=142 Identities=18% Similarity=0.188 Sum_probs=116.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCC
Q 011692 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQ 141 (479)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~ 141 (479)
..+.+...+.+|--++.+||+..|..-+.+||++ .|....++.-.+-.+..+
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~-------------------- 82 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKL-------------------- 82 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHc--------------------
Confidence 3455888999999999999999999999999998 787766665554444332
Q ss_pred CCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHH
Q 011692 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARA 221 (479)
Q Consensus 142 ~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~ 221 (479)
+..+.|.+.|++|+.
T Consensus 83 -----------------------------------------------------------------Ge~~~A~e~YrkAls 97 (250)
T COG3063 83 -----------------------------------------------------------------GENDLADESYRKALS 97 (250)
T ss_pred -----------------------------------------------------------------CChhhHHHHHHHHHh
Confidence 233456666666664
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011692 222 IAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 301 (479)
Q Consensus 222 Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ek 301 (479)
+ +++-+++++|-|...|.+|+|++|...|++|+. .|.-+..+.++-|+|+|-..+|+++.|..+|++
T Consensus 98 l-------~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~------~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~r 164 (250)
T COG3063 98 L-------APNNGDVLNNYGAFLCAQGRPEEAMQQFERALA------DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKR 164 (250)
T ss_pred c-------CCCccchhhhhhHHHHhCCChHHHHHHHHHHHh------CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHH
Confidence 4 567899999999999999999999999999875 356667789999999999999999999999999
Q ss_pred HHHHHHHH
Q 011692 302 AISVCKSR 309 (479)
Q Consensus 302 AL~I~k~r 309 (479)
+|++....
T Consensus 165 aL~~dp~~ 172 (250)
T COG3063 165 ALELDPQF 172 (250)
T ss_pred HHHhCcCC
Confidence 99886543
No 20
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=1.6e-08 Score=101.70 Aligned_cols=105 Identities=22% Similarity=0.261 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCC
Q 011692 61 KTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQ 140 (479)
Q Consensus 61 ~~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~ 140 (479)
.....|..|..+|..+++.++|.+|+++|.+|+++ .|..|-.|-+-+-||.++
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~L------------------- 128 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKL------------------- 128 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHh-------------------
Confidence 45677999999999999999999999999999998 788888888888888776
Q ss_pred CCCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHH
Q 011692 141 QGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVAR 220 (479)
Q Consensus 141 ~~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar 220 (479)
+.|+.||+-++.|+
T Consensus 129 ------------------------------------------------------------------g~~~~AVkDce~Al 142 (304)
T KOG0553|consen 129 ------------------------------------------------------------------GEYEDAVKDCESAL 142 (304)
T ss_pred ------------------------------------------------------------------cchHHHHHHHHHHH
Confidence 23556777777777
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 221 AIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 221 ~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
.| .+....+|.+||.+|+.+|+|..|+..|++||+|..
T Consensus 143 ~i-------Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP 180 (304)
T KOG0553|consen 143 SI-------DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDP 180 (304)
T ss_pred hc-------ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCC
Confidence 65 345677888888888888888888888888888743
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.87 E-value=2.8e-08 Score=115.45 Aligned_cols=161 Identities=15% Similarity=0.069 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcC--CCCCCCcCCCCCCCCC
Q 011692 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPL--VSVPKKEGDSQQGSDK 145 (479)
Q Consensus 68 ~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvL--G~~~~~~~e~~~~~~~ 145 (479)
.++.+|..++..|++++|+.+|.+++.+ +|.....++.++..++..++.+..+- -.+..
T Consensus 544 a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~----------- 604 (987)
T PRK09782 544 DLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLN----------- 604 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----------
Confidence 3678888899999999999999999876 46666666666666655444322100 00000
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
.++ .. .. .. +.+......++++.|...|+.|+.+
T Consensus 605 -------l~P---------~~-~a-----~~---------------------~LA~~l~~lG~~deA~~~l~~AL~l--- 638 (987)
T PRK09782 605 -------IAP---------SA-NA-----YV---------------------ARATIYRQRHNVPAAVSDLRAALEL--- 638 (987)
T ss_pred -------hCC---------CH-HH-----HH---------------------HHHHHHHHCCCHHHHHHHHHHHHHh---
Confidence 000 00 00 00 0000001124555555555555443
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.|..+.+|++||.++...|+|++|+..|+++|++.. ++ +.++++||.+|..+|++++|+.+|++||.+
T Consensus 639 ----~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-----~~---~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 639 ----EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-----DD---PALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred ----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 456778999999999999999999999999999743 23 589999999999999999999999999965
No 22
>PRK12370 invasion protein regulator; Provisional
Probab=98.86 E-value=5.1e-08 Score=106.81 Aligned_cols=85 Identities=9% Similarity=0.009 Sum_probs=57.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|...|+.|+.+ .+....++..++.+++..|+|++|+..|++++... ++++ +..|++||.+|
T Consensus 386 G~~~eAi~~~~~Al~l-------~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~----~p~~---~~~~~~la~~l 451 (553)
T PRK12370 386 GQLEEALQTINECLKL-------DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH----LQDN---PILLSMQVMFL 451 (553)
T ss_pred CCHHHHHHHHHHHHhc-------CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc----cccC---HHHHHHHHHHH
Confidence 3455666666666554 22233455556667777888888888888876542 1222 45788888998
Q ss_pred HcCCChhHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I 305 (479)
..+|++++|+.+|++.+..
T Consensus 452 ~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 452 SLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HhCCCHHHHHHHHHHhhhc
Confidence 8899999998888775543
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.84 E-value=6e-08 Score=108.45 Aligned_cols=161 Identities=13% Similarity=0.011 Sum_probs=115.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCC------cCCCCCCCcCCCCCCC
Q 011692 70 MEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEAD------PLVSVPKKEGDSQQGS 143 (479)
Q Consensus 70 ~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esd------vLG~~~~~~~e~~~~~ 143 (479)
...|..++..|+|++|+..|.+++++ +|....+++++|.+|+..++.+.. .+-.+..
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--------- 278 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESALAR--------GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--------- 278 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh---------
Confidence 45678889999999999999999997 688899999999999998765421 0000000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
..+... .. .. ..+..--..++++.|+..|+.++.+
T Consensus 279 ---------l~P~~~---------~a-----~~---------------------~lg~~l~~~g~~~eA~~~l~~al~l- 313 (656)
T PRK15174 279 ---------FNSDNV---------RI-----VT---------------------LYADALIRTGQNEKAIPLLQQSLAT- 313 (656)
T ss_pred ---------hCCCCH---------HH-----HH---------------------HHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 000000 00 00 0000011235677777777776654
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
.+....++..||.++...|+|++|+..|++++... ++ .+..++.+|.+|...|++++|+.+|++++
T Consensus 314 ------~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-----P~---~~~~~~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 314 ------HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-----GV---TSKWNRYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred ------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----cc---chHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34567889999999999999999999999998863 22 24567788999999999999999999999
Q ss_pred HHH
Q 011692 304 SVC 306 (479)
Q Consensus 304 ~I~ 306 (479)
.+.
T Consensus 380 ~~~ 382 (656)
T PRK15174 380 QAR 382 (656)
T ss_pred HhC
Confidence 884
No 24
>PRK12370 invasion protein regulator; Provisional
Probab=98.83 E-value=7.6e-08 Score=105.43 Aligned_cols=48 Identities=15% Similarity=0.293 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhh
Q 011692 68 ELMEKGTNALKE---SDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQ 123 (479)
Q Consensus 68 ~L~~~G~~~~~~---gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar 123 (479)
.+.-+|..++.. +++.+|+.+|.+|+++ .|..+.+|..+|.+++.+++
T Consensus 260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--------dP~~a~a~~~La~~~~~~~~ 310 (553)
T PRK12370 260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNM--------SPNSIAPYCALAECYLSMAQ 310 (553)
T ss_pred HHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHH
Confidence 455667655443 4678999999999998 89999999999999887743
No 25
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.83 E-value=1.6e-08 Score=79.23 Aligned_cols=65 Identities=20% Similarity=0.282 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHH
Q 011692 233 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGS-KPQEAIPYCQKAISV 305 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g-~~eeAi~~~ekAL~I 305 (479)
.|.+|..+|.+++..++|++|+.+|+++|++. |.-+.+|+++|.||..++ ++.+|+.+|++||++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 47899999999999999999999999999984 334689999999999999 799999999999976
No 26
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=6.4e-09 Score=112.94 Aligned_cols=85 Identities=19% Similarity=0.159 Sum_probs=63.6
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
.|.+.|.+++++|.++ .+..+.+|..||-=+..++.||.|..+|++||.+..++| .++|.||++|
T Consensus 435 kdh~~Aik~f~RAiQl-------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY--------nAwYGlG~vy 499 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQL-------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY--------NAWYGLGTVY 499 (638)
T ss_pred hHHHHHHHHHHHhhcc-------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh--------HHHHhhhhhe
Confidence 3455555555554433 456777888888888888888888888888888877776 7888888888
Q ss_pred HcCCChhHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~ 306 (479)
.++++++.|.-||++|+.|-
T Consensus 500 ~Kqek~e~Ae~~fqkA~~IN 519 (638)
T KOG1126|consen 500 LKQEKLEFAEFHFQKAVEIN 519 (638)
T ss_pred eccchhhHHHHHHHhhhcCC
Confidence 88888888888888887763
No 27
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.82 E-value=4.2e-08 Score=89.15 Aligned_cols=113 Identities=12% Similarity=0.008 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCcc
Q 011692 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDD 147 (479)
Q Consensus 68 ~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de 147 (479)
.+..+|..++..|+|++|+.+|.+++.+ .|....+|+.+|.+|...
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~-------------------------- 71 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMML-------------------------- 71 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHH--------------------------
Confidence 4677899999999999999999999998 899999999999999876
Q ss_pred ccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhc
Q 011692 148 SVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHW 227 (479)
Q Consensus 148 ~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~ 227 (479)
++++.|...|+.|..+
T Consensus 72 -----------------------------------------------------------g~~~~A~~~y~~Al~l----- 87 (144)
T PRK15359 72 -----------------------------------------------------------KEYTTAINFYGHALML----- 87 (144)
T ss_pred -----------------------------------------------------------hhHHHHHHHHHHHHhc-----
Confidence 3456677777776643
Q ss_pred CCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHc
Q 011692 228 GDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEI 288 (479)
Q Consensus 228 ~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~ 288 (479)
.+..+..|++||.++..+|++++|+..|+++|.+.... +..+.++|.+...
T Consensus 88 --~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~--------~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 --DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYAD--------ASWSEIRQNAQIM 138 (144)
T ss_pred --CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------hHHHHHHHHHHHH
Confidence 45678999999999999999999999999999986443 4666777766543
No 28
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.82 E-value=5.9e-08 Score=93.01 Aligned_cols=119 Identities=15% Similarity=0.144 Sum_probs=99.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCccccccccCCCCC
Q 011692 79 ESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAVNGESS 158 (479)
Q Consensus 79 ~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de~~~~~~~~e~a 158 (479)
.+++++++..|.+++.. +|..++.|+.+|++|+..
T Consensus 52 ~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~------------------------------------- 86 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWR------------------------------------- 86 (198)
T ss_pred chhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHC-------------------------------------
Confidence 56778888888888887 899999999999999864
Q ss_pred cccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcCCcchHHHHHH
Q 011692 159 TASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVDILS 238 (479)
Q Consensus 159 ~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~ 238 (479)
++++.|...|+.|+.+ .++.+++|.
T Consensus 87 ------------------------------------------------g~~~~A~~a~~~Al~l-------~P~~~~~~~ 111 (198)
T PRK10370 87 ------------------------------------------------NDYDNALLAYRQALQL-------RGENAELYA 111 (198)
T ss_pred ------------------------------------------------CCHHHHHHHHHHHHHh-------CCCCHHHHH
Confidence 4566777777777654 345688999
Q ss_pred HHHHHH-HhcCC--HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 239 ALAEVA-LERED--IETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 239 ~LGev~-le~g~--yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.+|.++ ...|+ +++|+..|+++|++.... ..++++||.++...|+|++|+.+|++++++
T Consensus 112 ~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~--------~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 112 ALATVLYYQAGQHMTPQTREMIDKALALDANE--------VTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC--------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999974 77788 599999999999986544 489999999999999999999999999865
No 29
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.81 E-value=2e-07 Score=95.77 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCC-hhHHHHHHHHHHHHHhhhhc
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELA-LECVNAYYQYGRALLYKAQE 124 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~-pe~A~~y~~YG~ALl~~ar~ 124 (479)
...++.+|..++.+|+|++|+.+|.+++.. +... .....+|+.+|.+|+..++.
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 69 VELHLALGNLFRRRGEVDRAIRIHQNLLSR-----PDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 456677888888888888888888888762 2221 23446777888888776544
No 30
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.81 E-value=9.8e-08 Score=107.26 Aligned_cols=134 Identities=7% Similarity=-0.076 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..++.+|......|+|++|..+|.++|++ .|+...++++|+.+|.++
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~~~~a~~L~~~------------------------ 133 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQR--------FPDSSEAFILMLRGVKRQ------------------------ 133 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHh------------------------
Confidence 666777888888889999999999999988 788999999999998875
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
..++.|... +++
T Consensus 134 -------------------------------------------------------------~~~eeA~~~-------~~~ 145 (694)
T PRK15179 134 -------------------------------------------------------------QGIEAGRAE-------IEL 145 (694)
T ss_pred -------------------------------------------------------------ccHHHHHHH-------HHH
Confidence 234444433 333
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.+...++.+..|+.+|.++.++|+|++|+..|+++|.- ++.-+.++.++|.+|...|+.++|...|++|++.
T Consensus 146 ~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--------~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 146 YFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--------HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33445678999999999999999999999999999871 2334689999999999999999999999999987
Q ss_pred HH
Q 011692 306 CK 307 (479)
Q Consensus 306 ~k 307 (479)
+-
T Consensus 218 ~~ 219 (694)
T PRK15179 218 IG 219 (694)
T ss_pred hC
Confidence 63
No 31
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.81 E-value=7.4e-08 Score=107.76 Aligned_cols=79 Identities=14% Similarity=0.074 Sum_probs=65.0
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHH
Q 011692 219 ARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPY 298 (479)
Q Consensus 219 Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~ 298 (479)
|+..|++.+...|..+.++..||.++..+|+|++|+..|++++.+. |+ .+.++++||.+|...|++++|+.+
T Consensus 269 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-----P~---~~~a~~~La~~l~~~G~~~eA~~~ 340 (656)
T PRK15174 269 AAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-----PD---LPYVRAMYARALRQVGQYTAASDE 340 (656)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CC---CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4444444444345678999999999999999999999999999862 23 357899999999999999999999
Q ss_pred HHHHHHH
Q 011692 299 CQKAISV 305 (479)
Q Consensus 299 ~ekAL~I 305 (479)
|++++..
T Consensus 341 l~~al~~ 347 (656)
T PRK15174 341 FVQLARE 347 (656)
T ss_pred HHHHHHh
Confidence 9998854
No 32
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.81 E-value=4.6e-08 Score=101.75 Aligned_cols=100 Identities=14% Similarity=0.208 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..|..+|..++..|+|++|+++|.+|+++ .|..+.+|+++|.+|+.+
T Consensus 2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~------------------------ 49 (356)
T PLN03088 2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKL------------------------ 49 (356)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHc------------------------
Confidence 456889999999999999999999999998 788999999999999875
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
++|+.|+..|+.|+.+.
T Consensus 50 -------------------------------------------------------------g~~~eAl~~~~~Al~l~-- 66 (356)
T PLN03088 50 -------------------------------------------------------------GNFTEAVADANKAIELD-- 66 (356)
T ss_pred -------------------------------------------------------------CCHHHHHHHHHHHHHhC--
Confidence 35677887777777652
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
+..+.+|++||.+++.+|+|++|+.+|++||.+..
T Consensus 67 -----P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P 101 (356)
T PLN03088 67 -----PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAP 101 (356)
T ss_pred -----cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 35678999999999999999999999999998853
No 33
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.80 E-value=2.1e-07 Score=95.51 Aligned_cols=59 Identities=19% Similarity=0.190 Sum_probs=49.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhcc
Q 011692 59 REKTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEE 125 (479)
Q Consensus 59 ~~~~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~e 125 (479)
.++-...+...+.+|..++..|+|++|+.+|.+++++ +|.+..+|+.+|.+++..++.+
T Consensus 28 ~~~~~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~ 86 (389)
T PRK11788 28 QQKESNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVD 86 (389)
T ss_pred hhhhhhhccHHHHHHHHHHhcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHH
Confidence 3444455667778899999999999999999999997 6888999999999999886553
No 34
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.79 E-value=4.7e-08 Score=90.20 Aligned_cols=101 Identities=13% Similarity=0.038 Sum_probs=80.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|+..|..|+.+.. .+...+.+|.+||.++...|+|++|+..|++||.+..... ..+..++.+|+++|..+
T Consensus 49 g~~~~A~~~~~~al~l~~----~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~-~~~~~la~i~~~~~~~~ 123 (168)
T CHL00033 49 GEYAEALQNYYEAMRLEI----DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP-QALNNMAVICHYRGEQA 123 (168)
T ss_pred CCHHHHHHHHHHHHhccc----cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHhhHHH
Confidence 457788889999988743 2334678999999999999999999999999999854432 33556666666677666
Q ss_pred HcCCChhHHHHHHHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVCKSRVQR 312 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~k~rl~~ 312 (479)
...|+++.|+.+|.+|+.+++..++.
T Consensus 124 ~~~g~~~~A~~~~~~a~~~~~~a~~~ 149 (168)
T CHL00033 124 IEQGDSEIAEAWFDQAAEYWKQAIAL 149 (168)
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHh
Confidence 69999999999999999998887764
No 35
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.78 E-value=3.7e-07 Score=87.86 Aligned_cols=149 Identities=13% Similarity=0.043 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCC
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~ 143 (479)
..+..++.+|..++..|+|++|+..|.+++.+. +.+|....+++.+|.+|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~---------------------- 83 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKS---------------------- 83 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhc----------------------
Confidence 347789999999999999999999999998873 33455667899999999864
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
++++.|...|+.++.++
T Consensus 84 ---------------------------------------------------------------~~~~~A~~~~~~~l~~~ 100 (235)
T TIGR03302 84 ---------------------------------------------------------------GDYAEAIAAADRFIRLH 100 (235)
T ss_pred ---------------------------------------------------------------CCHHHHHHHHHHHHHHC
Confidence 35667777777777554
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHHHHhcCC---------CChhHHHHHHHHHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALER--------EDIETSLSDYQKALTILERMVEP---------DSRHIAELNFRICLCL 286 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~--------g~yeeAl~dy~kAL~I~~~llg~---------d~r~iAea~~~LG~ay 286 (479)
-. ++....+++.+|.++... +++++|+..|++++......... -...+...++.+|.+|
T Consensus 101 p~----~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~ 176 (235)
T TIGR03302 101 PN----HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFY 176 (235)
T ss_pred cC----CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 345667889999999876 88999999999998764332100 0111223346889999
Q ss_pred HcCCChhHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~ 306 (479)
...|++.+|+..|++++..+
T Consensus 177 ~~~g~~~~A~~~~~~al~~~ 196 (235)
T TIGR03302 177 LKRGAYVAAINRFETVVENY 196 (235)
T ss_pred HHcCChHHHHHHHHHHHHHC
Confidence 99999999999999998764
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.76 E-value=1.7e-08 Score=109.77 Aligned_cols=133 Identities=22% Similarity=0.242 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
-..+...|+.+--|++++.|+.||.||+++ .|..+-+|-++|-=+...
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~------------------------ 468 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIAT------------------------ 468 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhh------------------------
Confidence 346778999999999999999999999998 677777776665322211
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
+.|+.|.. .|.+
T Consensus 469 -------------------------------------------------------------ee~d~a~~-------~fr~ 480 (638)
T KOG1126|consen 469 -------------------------------------------------------------EEFDKAMK-------SFRK 480 (638)
T ss_pred -------------------------------------------------------------HHHHhHHH-------HHHh
Confidence 23444444 4444
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.+.-.++.-++|+-||-||+.+|+|+.|.-+|++|+.|-... ......+|..|...++.++|+.+|++|+-+
T Consensus 481 Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n--------svi~~~~g~~~~~~k~~d~AL~~~~~A~~l 552 (638)
T KOG1126|consen 481 ALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN--------SVILCHIGRIQHQLKRKDKALQLYEKAIHL 552 (638)
T ss_pred hhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccc--------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhc
Confidence 444456778899999999999999999999999999995433 356778999999999999999999999976
Q ss_pred H
Q 011692 306 C 306 (479)
Q Consensus 306 ~ 306 (479)
-
T Consensus 553 d 553 (638)
T KOG1126|consen 553 D 553 (638)
T ss_pred C
Confidence 4
No 37
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.76 E-value=1.4e-07 Score=104.20 Aligned_cols=187 Identities=16% Similarity=0.071 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--CCCCCCCcCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQGS 143 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv--LG~~~~~~~e~~~~~ 143 (479)
+..++..|..++.+|+|++|+..|.+++++ +|..+.+++.+|.+++..++.+... |......
T Consensus 22 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------- 85 (899)
T TIGR02917 22 PESLIEAAKSYLQKNKYKAAIIQLKNALQK--------DPNDAEARFLLGKIYLALGDYAAAEKELRKALSL-------- 85 (899)
T ss_pred HHHHHHHHHHHHHcCChHhHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------
Confidence 457899999999999999999999999987 7889999999999999986653321 1000000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCcccc---ccc-cCcC-----hHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVA---EAD-EDES-----DLDLAWK 214 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~---~~~-ed~~-----dle~Awe 214 (479)
.+.+.. ........ ....+.. ++... ... .... .+..++.
T Consensus 86 ----------~~~~~~--~~~~~a~~------------~~~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (899)
T TIGR02917 86 ----------GYPKNQ--VLPLLARA------------YLLQGKF-------QQVLDELPGKTLLDDEGAAELLALRGLA 134 (899)
T ss_pred ----------CCChhh--hHHHHHHH------------HHHCCCH-------HHHHHhhcccccCCchhhHHHHHHHHHH
Confidence 000000 00000000 0000000 00000 000 0000 1112222
Q ss_pred -----HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcC
Q 011692 215 -----MLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIG 289 (479)
Q Consensus 215 -----~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~ 289 (479)
-++.|+..|.+.....+....++..+|.+++..|+|++|+..+++++.+. + ....+++.+|.+|...
T Consensus 135 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~ 206 (899)
T TIGR02917 135 YLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTAD-----P---GNVDALLLKGDLLLSL 206 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----C---CChHHHHHHHHHHHhc
Confidence 23667777776655455667788888888888888888888888887752 2 2247888899999999
Q ss_pred CChhHHHHHHHHHHHHHH
Q 011692 290 SKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 290 g~~eeAi~~~ekAL~I~k 307 (479)
|++++|+.+|++++.+..
T Consensus 207 g~~~~A~~~~~~a~~~~p 224 (899)
T TIGR02917 207 GNIELALAAYRKAIALRP 224 (899)
T ss_pred CCHHHHHHHHHHHHhhCC
Confidence 999999999999987654
No 38
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.75 E-value=9.5e-08 Score=83.86 Aligned_cols=84 Identities=20% Similarity=0.242 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 011692 208 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 287 (479)
Q Consensus 208 dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~ 287 (479)
+++.|.++|+.+..+ .+....+|..+|.++..+++|++|+..|++++.+. +.....||++|.+|.
T Consensus 32 ~~~~A~~~~~~~~~~-------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 32 RYDEALKLFQLLAAY-------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--------PDDPRPYFHAAECLL 96 (135)
T ss_pred cHHHHHHHHHHHHHh-------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCChHHHHHHHHHHH
Confidence 456676666665543 23457899999999999999999999999999873 334689999999999
Q ss_pred cCCChhHHHHHHHHHHHHH
Q 011692 288 IGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 288 ~~g~~eeAi~~~ekAL~I~ 306 (479)
..|++++|+.+|++++.+.
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 97 ALGEPESALKALDLAIEIC 115 (135)
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 9999999999999998764
No 39
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.74 E-value=2.3e-07 Score=93.29 Aligned_cols=98 Identities=22% Similarity=0.218 Sum_probs=82.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
+++..|-+.|..|-.++.+. +.....+.+|...+.++... ++++|+..|++|+.|..+.- ..+..|.++.+||.+|
T Consensus 49 ~~~~~A~~ay~kAa~~~~~~-~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G--~~~~aA~~~~~lA~~y 124 (282)
T PF14938_consen 49 KDWEKAAEAYEKAADCYEKL-GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG--RFSQAAKCLKELAEIY 124 (282)
T ss_dssp T-CHHHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT---HHHHHHHHHHHHHHH
T ss_pred hccchhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHH
Confidence 45677888899999999884 44567899999999998887 99999999999999998753 5677899999999999
Q ss_pred HcC-CChhHHHHHHHHHHHHHHH
Q 011692 287 EIG-SKPQEAIPYCQKAISVCKS 308 (479)
Q Consensus 287 ~~~-g~~eeAi~~~ekAL~I~k~ 308 (479)
+.. +++++|+++|++|+++++.
T Consensus 125 e~~~~d~e~Ai~~Y~~A~~~y~~ 147 (282)
T PF14938_consen 125 EEQLGDYEKAIEYYQKAAELYEQ 147 (282)
T ss_dssp CCTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHH
Confidence 999 9999999999999999874
No 40
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.74 E-value=4e-07 Score=87.68 Aligned_cols=150 Identities=14% Similarity=0.073 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCc
Q 011692 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKD 146 (479)
Q Consensus 67 ~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~d 146 (479)
..++.+|..++.+|+|++|+..|.+++++. +.++....++|++|.+++.. ++...
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~~g~~~~~~-------~~~~~------------- 125 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLH-----PNHPDADYAYYLRGLSNYNQ-------IDRVD------------- 125 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCCchHHHHHHHHHHHHHh-------ccccc-------------
Confidence 457889999999999999999999999862 45667777899999999875 11000
Q ss_pred cccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011692 147 DSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 226 (479)
Q Consensus 147 e~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~ 226 (479)
...++++.|.+.|+.+...+-..
T Consensus 126 ---------------------------------------------------------~~~~~~~~A~~~~~~~~~~~p~~ 148 (235)
T TIGR03302 126 ---------------------------------------------------------RDQTAAREAFEAFQELIRRYPNS 148 (235)
T ss_pred ---------------------------------------------------------CCHHHHHHHHHHHHHHHHHCCCC
Confidence 01134555555555444332211
Q ss_pred cCC----------cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHH
Q 011692 227 WGD----------SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAI 296 (479)
Q Consensus 227 ~~~----------~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi 296 (479)
... .......+..+|.+++.+|+|.+|+..|++++... ++++..+.+++++|.+|...|++++|+
T Consensus 149 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~ 223 (235)
T TIGR03302 149 EYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQ 223 (235)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 100 01123445689999999999999999999998874 345778999999999999999999999
Q ss_pred HHHHHHH
Q 011692 297 PYCQKAI 303 (479)
Q Consensus 297 ~~~ekAL 303 (479)
.+|+...
T Consensus 224 ~~~~~l~ 230 (235)
T TIGR03302 224 DAAAVLG 230 (235)
T ss_pred HHHHHHH
Confidence 9887644
No 41
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.72 E-value=1.5e-07 Score=111.37 Aligned_cols=167 Identities=14% Similarity=0.110 Sum_probs=100.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--CCCCCCCcCCCCCCCCCccc
Q 011692 71 EKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQGSDKDDS 148 (479)
Q Consensus 71 ~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv--LG~~~~~~~e~~~~~~~de~ 148 (479)
.+|..++..|+|++|+.+|.+++++ +|..+.+++.+|.+|+..++.+... |-...+.
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~------------- 332 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRA--------NPKDSEALGALGQAYSQQGDRARAVAQFEKALAL------------- 332 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------
Confidence 4588999999999999999999998 7889999999999999885543211 0000000
Q ss_pred cccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHH-----HHHHHHHHHH
Q 011692 149 VKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAW-----KMLDVARAIA 223 (479)
Q Consensus 149 ~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Aw-----e~Le~Ar~Iy 223 (479)
++... .. . .. ......-.-.-.+..+. .-++.|+..|
T Consensus 333 -----~p~~~------------------~~-----~--~~--------~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~ 374 (1157)
T PRK11447 333 -----DPHSS------------------NR-----D--KW--------ESLLKVNRYWLLIQQGDAALKANNLAQAERLY 374 (1157)
T ss_pred -----CCCcc------------------ch-----h--HH--------HHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 00000 00 0 00 00000000000001111 1235566777
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
++.....+..+.+|..||.++...|+|++|+..|+++|++... + +.++++|+.+|.. +++++|+.++++..
T Consensus 375 ~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-----~---~~a~~~L~~l~~~-~~~~~A~~~l~~l~ 445 (1157)
T PRK11447 375 QQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-----N---TNAVRGLANLYRQ-QSPEKALAFIASLS 445 (1157)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----C---HHHHHHHHHHHHh-cCHHHHHHHHHhCC
Confidence 7766655666777888888888888888888888888877422 2 3567778887753 46778877776644
Q ss_pred HH
Q 011692 304 SV 305 (479)
Q Consensus 304 ~I 305 (479)
..
T Consensus 446 ~~ 447 (1157)
T PRK11447 446 AS 447 (1157)
T ss_pred HH
Confidence 43
No 42
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=2e-07 Score=100.23 Aligned_cols=107 Identities=17% Similarity=0.164 Sum_probs=90.1
Q ss_pred cChHHHHHHHH-------HHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 011692 206 ESDLDLAWKML-------DVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAEL 278 (479)
Q Consensus 206 ~~dle~Awe~L-------e~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea 278 (479)
+.|++.++-+| ++|..+|+-.+...|.-...|++||-..--..++++||..|++||+|+..+. .+
T Consensus 429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yV--------R~ 500 (579)
T KOG1125|consen 429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYV--------RV 500 (579)
T ss_pred ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCee--------ee
Confidence 45666666554 7777777777766788889999999999999999999999999999998775 88
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHH-------------HHHHHHHHHhhh
Q 011692 279 NFRICLCLEIGSKPQEAIPYCQKAISVCKS-------------RVQRLLNEVKSL 320 (479)
Q Consensus 279 ~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~-------------rl~~l~~~l~~~ 320 (479)
-||||++|..+|.|++|++||-.||.|.++ .+..|+..|-..
T Consensus 501 RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~ 555 (579)
T KOG1125|consen 501 RYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAM 555 (579)
T ss_pred ehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHc
Confidence 999999999999999999999999999887 566666555443
No 43
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=98.70 E-value=2.1e-08 Score=71.66 Aligned_cols=38 Identities=39% Similarity=0.758 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPD 271 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d 271 (479)
|+||..||+|+++.++|++|+.+|++||+|++++++++
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 57999999999999999999999999999999999864
No 44
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.67 E-value=2.6e-07 Score=93.43 Aligned_cols=84 Identities=12% Similarity=0.017 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 011692 208 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 287 (479)
Q Consensus 208 dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~ 287 (479)
++..|...|+.|+.+ .+..+.+|+.||.++...|+|++|+..|+++|++... -+.+|+++|.+|.
T Consensus 79 ~~~~A~~~~~~Al~l-------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~--------~~~a~~~lg~~l~ 143 (296)
T PRK11189 79 LRALARNDFSQALAL-------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT--------YNYAYLNRGIALY 143 (296)
T ss_pred CHHHHHHHHHHHHHc-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHH
Confidence 344555555555543 4567899999999999999999999999999987433 2578999999999
Q ss_pred cCCChhHHHHHHHHHHHHH
Q 011692 288 IGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 288 ~~g~~eeAi~~~ekAL~I~ 306 (479)
..|++++|+..|++++.+.
T Consensus 144 ~~g~~~eA~~~~~~al~~~ 162 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQDD 162 (296)
T ss_pred HCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999864
No 45
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.64 E-value=5.2e-07 Score=105.02 Aligned_cols=162 Identities=12% Similarity=0.059 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--CCCCCCCcCCCCCCCCC
Q 011692 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 68 ~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv--LG~~~~~~~e~~~~~~~ 145 (479)
..+..|..++..|+|++|+.+|.+++.. .|. ...++.+|.+++..++.+... +-.....
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~--------~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l---------- 571 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLH--------DMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR---------- 571 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc--------CCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----------
Confidence 3667788888999999999999997543 122 245789999998875442210 0000000
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
.+... .... .........++++.|...|+.|+.+
T Consensus 572 --------~P~~~------------------~l~~-----------------~La~~l~~~Gr~~eAl~~~~~AL~l--- 605 (987)
T PRK09782 572 --------GLGDN------------------ALYW-----------------WLHAQRYIPGQPELALNDLTRSLNI--- 605 (987)
T ss_pred --------CCccH------------------HHHH-----------------HHHHHHHhCCCHHHHHHHHHHHHHh---
Confidence 00000 0000 0000001226677777776666543
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.+. +..|.+||.++...|++++|+..|++++.+.. ++ +.+|++||.+|...|++++|+.+|++|+.+
T Consensus 606 ----~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-----d~---~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 606 ----APS-ANAYVARATIYRQRHNVPAAVSDLRAALELEP-----NN---SNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred ----CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344 78999999999999999999999999999843 33 489999999999999999999999999987
Q ss_pred HH
Q 011692 306 CK 307 (479)
Q Consensus 306 ~k 307 (479)
..
T Consensus 673 ~P 674 (987)
T PRK09782 673 LP 674 (987)
T ss_pred CC
Confidence 53
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2.2e-07 Score=99.84 Aligned_cols=91 Identities=19% Similarity=0.171 Sum_probs=77.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
..|..|..+|..++...+..+...+.-.-++++||-++..+++|++||.+|+++|.+..+. +.+|-.||.+|
T Consensus 428 ~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~--------~~~~asig~iy 499 (611)
T KOG1173|consen 428 EEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD--------ASTHASIGYIY 499 (611)
T ss_pred hhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc--------hhHHHHHHHHH
Confidence 4688888888888855544444444567789999999999999999999999999987655 59999999999
Q ss_pred HcCCChhHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I 305 (479)
..+|+++.|+.||.+||.+
T Consensus 500 ~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 500 HLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHhcChHHHHHHHHHHHhc
Confidence 9999999999999999976
No 47
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.61 E-value=2.9e-07 Score=109.03 Aligned_cols=168 Identities=15% Similarity=0.153 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--CCCCCCCcCCCCCCCCC
Q 011692 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 68 ~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv--LG~~~~~~~e~~~~~~~ 145 (479)
.++.+|..++..|+|++|+.+|.+++++ +|..+.+++.+|.+++..++.+... +-.+.+.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~---------- 414 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQV--------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM---------- 414 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------
Confidence 4467789999999999999999999998 7888899999999999886543221 0000000
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
++... . . .. ...... ...+++.|..+++.......+
T Consensus 415 --------~p~~~------~---a-----~~---------------------~L~~l~-~~~~~~~A~~~l~~l~~~~~~ 450 (1157)
T PRK11447 415 --------DPGNT------N---A-----VR---------------------GLANLY-RQQSPEKALAFIASLSASQRR 450 (1157)
T ss_pred --------CCCCH------H---H-----HH---------------------HHHHHH-HhcCHHHHHHHHHhCCHHHHH
Confidence 00000 0 0 00 000000 001122333332211110000
Q ss_pred hcCC--cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 226 HWGD--SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 226 ~~~~--~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
.... ..-..+.+..+|.++...|+|++|+..|+++|++. |++ ..++++||.+|...|++++|+..|++++
T Consensus 451 ~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-----P~~---~~~~~~LA~~~~~~G~~~~A~~~l~~al 522 (1157)
T PRK11447 451 SIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-----PGS---VWLTYRLAQDLRQAGQRSQADALMRRLA 522 (1157)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0000 00124578899999999999999999999999874 333 4689999999999999999999999988
Q ss_pred HH
Q 011692 304 SV 305 (479)
Q Consensus 304 ~I 305 (479)
.+
T Consensus 523 ~~ 524 (1157)
T PRK11447 523 QQ 524 (1157)
T ss_pred Hc
Confidence 75
No 48
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.60 E-value=7.7e-07 Score=82.61 Aligned_cols=55 Identities=22% Similarity=0.258 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011692 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (479)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (479)
....+..++.+|..++..|+|++|+.+|.+++.+. +.+++.+.+|+++|.+++..
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~ 85 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASN 85 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHc
Confidence 34568889999999999999999999999999973 23445678999999999875
No 49
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.59 E-value=1.6e-06 Score=83.18 Aligned_cols=103 Identities=24% Similarity=0.295 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..++.+|..++..|+|++|+.+|.+|+.+ .|+.+.+|+.||.+|+... |
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~aL~~~~-------g--------------- 122 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALATVLYYQA-------G--------------- 122 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhc-------C---------------
Confidence 566899999999999999999999999998 7999999999999986530 0
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
...+..|.++|+.++.+
T Consensus 123 ------------------------------------------------------------~~~~~~A~~~l~~al~~--- 139 (198)
T PRK10370 123 ------------------------------------------------------------QHMTPQTREMIDKALAL--- 139 (198)
T ss_pred ------------------------------------------------------------CCCcHHHHHHHHHHHHh---
Confidence 01234566666666543
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
.+....+|++||.++++.|+|++|+.+|+++|++..
T Consensus 140 ----dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 140 ----DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred ----CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455678999999999999999999999999988754
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.59 E-value=5.3e-07 Score=89.57 Aligned_cols=64 Identities=22% Similarity=0.240 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 011692 236 ILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 236 v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k 307 (479)
.+..||.+++.+|++++|+..|++++.+.+. + ..++..+|.+|...|++++|+.++++++.-++
T Consensus 216 ~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-----d---~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l~ 279 (280)
T PF13429_consen 216 LWDALAAAYLQLGRYEEALEYLEKALKLNPD-----D---PLWLLAYADALEQAGRKDEALRLRRQALRLLR 279 (280)
T ss_dssp HCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT---------HHHHHHHHHHHT--------------------
T ss_pred HHHHHHHHhcccccccccccccccccccccc-----c---cccccccccccccccccccccccccccccccC
Confidence 6778999999999999999999999876443 3 37788999999999999999999999886543
No 51
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.53 E-value=2e-06 Score=95.08 Aligned_cols=168 Identities=17% Similarity=0.110 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--CCCCCCCcCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQG 142 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv--LG~~~~~~~e~~~~ 142 (479)
.+..+..+|..++..|+|++|..+|.+++++ +|....+++.+|.+++..++.+... +-....
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-------- 187 (899)
T TIGR02917 124 AAELLALRGLAYLGLGQLELAQKSYEQALAI--------DPRSLYAKLGLAQLALAENRFDEARALIDEVLT-------- 187 (899)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHH--------
Confidence 3567788999999999999999999999886 5777788999999988875442210 000000
Q ss_pred CCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHH
Q 011692 143 SDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI 222 (479)
Q Consensus 143 ~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~I 222 (479)
.++... . . .. -.+...-..++++.|...|+.++.+
T Consensus 188 ----------~~~~~~------~---~-----~~---------------------~~~~~~~~~g~~~~A~~~~~~a~~~ 222 (899)
T TIGR02917 188 ----------ADPGNV------D---A-----LL---------------------LKGDLLLSLGNIELALAAYRKAIAL 222 (899)
T ss_pred ----------hCCCCh------H---H-----HH---------------------HHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 000000 0 0 00 0000001225666777666666533
Q ss_pred HHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 011692 223 AEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKA 302 (479)
Q Consensus 223 yek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekA 302 (479)
.+....++..++.+++..|+|++|...|++++.+. +++ ...++.+|.++...|++++|+.+|+++
T Consensus 223 -------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~ 287 (899)
T TIGR02917 223 -------RPNNPAVLLALATILIEAGEFEEAEKHADALLKKA-----PNS---PLAHYLKALVDFQKKNYEDARETLQDA 287 (899)
T ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---chHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34557789999999999999999999999988753 223 357888999999999999999999999
Q ss_pred HHHHHH
Q 011692 303 ISVCKS 308 (479)
Q Consensus 303 L~I~k~ 308 (479)
+.+...
T Consensus 288 l~~~~~ 293 (899)
T TIGR02917 288 LKSAPE 293 (899)
T ss_pred HHhCCC
Confidence 987644
No 52
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=1.4e-06 Score=92.52 Aligned_cols=99 Identities=17% Similarity=0.129 Sum_probs=60.8
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 011692 206 ESDLDLAWKMLDVARAIAEKHWGDSMEKV-DILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICL 284 (479)
Q Consensus 206 ~~dle~Awe~Le~Ar~Iyek~~~~~~~~A-~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ 284 (479)
..+|+.|.++|++|..+=.+...-....+ -+|-.|-.. ...++|.+|+..+++|+++-.+. =.+|-.||.
T Consensus 475 qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkc--------e~A~~tlaq 545 (606)
T KOG0547|consen 475 QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKC--------EQAYETLAQ 545 (606)
T ss_pred HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchH--------HHHHHHHHH
Confidence 35666666666666654322211122221 122222222 23466666666666666664433 367888999
Q ss_pred HHHcCCChhHHHHHHHHHHHHHHHHHHHH
Q 011692 285 CLEIGSKPQEAIPYCQKAISVCKSRVQRL 313 (479)
Q Consensus 285 ay~~~g~~eeAi~~~ekAL~I~k~rl~~l 313 (479)
....+++.++||++|++++.+-+...+.+
T Consensus 546 ~~lQ~~~i~eAielFEksa~lArt~~E~~ 574 (606)
T KOG0547|consen 546 FELQRGKIDEAIELFEKSAQLARTESEMV 574 (606)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999998877766655
No 53
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.51 E-value=1.3e-06 Score=85.43 Aligned_cols=129 Identities=17% Similarity=0.128 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCc
Q 011692 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKD 146 (479)
Q Consensus 67 ~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~d 146 (479)
..+..++..+..+|+.+.|-+.|.+|+.+ +|..++++++||--|+.++
T Consensus 70 ~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--------~p~~GdVLNNYG~FLC~qg------------------------ 117 (250)
T COG3063 70 LAHLVRAHYYQKLGENDLADESYRKALSL--------APNNGDVLNNYGAFLCAQG------------------------ 117 (250)
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHhc--------CCCccchhhhhhHHHHhCC------------------------
Confidence 44566777788899999999999999998 9999999999999999762
Q ss_pred cccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011692 147 DSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 226 (479)
Q Consensus 147 e~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~ 226 (479)
.++.|+.+|+.|.. .
T Consensus 118 -------------------------------------------------------------~~~eA~q~F~~Al~----~ 132 (250)
T COG3063 118 -------------------------------------------------------------RPEEAMQQFERALA----D 132 (250)
T ss_pred -------------------------------------------------------------ChHHHHHHHHHHHh----C
Confidence 34556777777653 1
Q ss_pred cCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011692 227 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 301 (479)
Q Consensus 227 ~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ek 301 (479)
..-...+++|.|+|.+.+..|++++|..+|+++|++..... .+...++..+...|+|-.|.-+|++
T Consensus 133 -P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~--------~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 133 -PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP--------PALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred -CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC--------hHHHHHHHHHHhcccchHHHHHHHH
Confidence 12356789999999999999999999999999999976653 5666777778888999999877765
No 54
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.48 E-value=2.6e-06 Score=79.15 Aligned_cols=85 Identities=14% Similarity=0.188 Sum_probs=72.2
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++|+.|..+|+....+ .+..++-|++||-++..+|+|.+||..|.+|+.+.. ++ +.+|+++|.||
T Consensus 49 G~l~~A~~~f~~L~~~-------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-----dd---p~~~~~ag~c~ 113 (157)
T PRK15363 49 KEFAGAARLFQLLTIY-------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-----DA---PQAPWAAAECY 113 (157)
T ss_pred CCHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----CC---chHHHHHHHHH
Confidence 4566666666554432 456789999999999999999999999999998864 33 48999999999
Q ss_pred HcCCChhHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~ 306 (479)
...|+.+.|+..|+.||.++
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999998
No 55
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.47 E-value=2.3e-06 Score=72.36 Aligned_cols=91 Identities=12% Similarity=0.043 Sum_probs=75.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|.+.|+.++..+ ++ .+....+++.+|.+++..++|++|+..|++++... ++++.+..+++++|.+|
T Consensus 16 ~~~~~A~~~~~~~~~~~---~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 16 GDYADAIQAFQAFLKKY---PK-STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKSPKAPDALLKLGMSL 86 (119)
T ss_pred CCHHHHHHHHHHHHHHC---CC-ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCCCcccHHHHHHHHHH
Confidence 56777888777776543 22 33457899999999999999999999999999763 56667789999999999
Q ss_pred HcCCChhHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~ 306 (479)
...+++++|+.+|++++...
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHhCChHHHHHHHHHHHHHC
Confidence 99999999999999988753
No 56
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.46 E-value=4.1e-06 Score=70.82 Aligned_cols=105 Identities=22% Similarity=0.188 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
++.++.+|..++.+|+|++|+.+|.+++.. + +.++....++|.+|.+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~~~~~~l~~~~~~~------------------------ 52 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKK----Y-PKSTYAPNAHYWLGEAYYAQ------------------------ 52 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----C-CCccccHHHHHHHHHHHHhh------------------------
Confidence 467899999999999999999999999875 2 23455578999999999865
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
++++.|..+|+.+...+-
T Consensus 53 -------------------------------------------------------------~~~~~A~~~~~~~~~~~p- 70 (119)
T TIGR02795 53 -------------------------------------------------------------GKYADAAKAFLAVVKKYP- 70 (119)
T ss_pred -------------------------------------------------------------ccHHHHHHHHHHHHHHCC-
Confidence 457778888777765442
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTIL 264 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~ 264 (479)
.++....++..+|.++...+++++|+..|.+++...
T Consensus 71 ---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 71 ---KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred ---CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 223457889999999999999999999999999884
No 57
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.46 E-value=2.1e-05 Score=71.04 Aligned_cols=139 Identities=23% Similarity=0.141 Sum_probs=103.6
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCC
Q 011692 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQ 141 (479)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~ 141 (479)
..+.+..++......+..+++..+...|.+... .|+. .+.-..+++.+|++++..
T Consensus 7 ~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~----~~~~-s~ya~~A~l~lA~~~~~~-------------------- 61 (145)
T PF09976_consen 7 QAEQASALYEQALQALQAGDPAKAEAAAEQLAK----DYPS-SPYAALAALQLAKAAYEQ-------------------- 61 (145)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HCCC-ChHHHHHHHHHHHHHHHC--------------------
Confidence 345678888888888899999998665555444 4443 455577888888888753
Q ss_pred CCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHH
Q 011692 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARA 221 (479)
Q Consensus 142 ~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~ 221 (479)
++|+.|.+.|+.+..
T Consensus 62 -----------------------------------------------------------------g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 62 -----------------------------------------------------------------GDYDEAKAALEKALA 76 (145)
T ss_pred -----------------------------------------------------------------CCHHHHHHHHHHHHh
Confidence 567778777776654
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011692 222 IAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 301 (479)
Q Consensus 222 Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ek 301 (479)
- ..+ ..-..-++..|+.|++..|+|++|+..++. + ++...-+..+..+|.+|...|++++|+..|++
T Consensus 77 ~---~~d-~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-------~--~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 77 N---APD-PELKPLARLRLARILLQQGQYDEALATLQQ-------I--PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred h---CCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-------c--cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2 211 222456788999999999999999998855 1 23344567888999999999999999999999
Q ss_pred HH
Q 011692 302 AI 303 (479)
Q Consensus 302 AL 303 (479)
||
T Consensus 144 Al 145 (145)
T PF09976_consen 144 AL 145 (145)
T ss_pred hC
Confidence 86
No 58
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.46 E-value=6.5e-06 Score=76.38 Aligned_cols=97 Identities=12% Similarity=0.102 Sum_probs=69.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|+.+|+.+..+... ....+.+|.+||.++...|+|++|+..|++++.+.. .....++.+|.+|
T Consensus 49 g~~~~A~~~~~~al~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~ 116 (172)
T PRK02603 49 GEYAEALENYEEALKLEED----PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP--------KQPSALNNIAVIY 116 (172)
T ss_pred CCHHHHHHHHHHHHHHhhc----cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------ccHHHHHHHHHHH
Confidence 4677888888888776432 224578999999999999999999999999999743 2357788888888
Q ss_pred HcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVCKSRVQRLLN 315 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~k~rl~~l~~ 315 (479)
...+++..|...+++|+..++.-+..++.
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~ 145 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQ 145 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHH
Confidence 88776555555555554444444444433
No 59
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.42 E-value=1.2e-05 Score=92.23 Aligned_cols=153 Identities=17% Similarity=0.047 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..+..+|..++..|+|++|..++.+++++... ......+.+++.+|.+++..
T Consensus 452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~a~~~lg~~~~~~------------------------ 504 (903)
T PRK04841 452 AEFNALRAQVAINDGDPEEAERLAELALAELPL---TWYYSRIVATSVLGEVHHCK------------------------ 504 (903)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---ccHHHHHHHHHHHHHHHHHc------------------------
Confidence 444455788999999999999999999985211 11122334555666665432
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
++++.|...++.++.++.+
T Consensus 505 -------------------------------------------------------------G~~~~A~~~~~~al~~~~~ 523 (903)
T PRK04841 505 -------------------------------------------------------------GELARALAMMQQTEQMARQ 523 (903)
T ss_pred -------------------------------------------------------------CCHHHHHHHHHHHHHHHhh
Confidence 5788899999999988876
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
... ....+.++..||.+++..|++++|...+++++.+.....+..++..+.++..+|.++...|++++|..++++++.+
T Consensus 524 ~g~-~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 602 (903)
T PRK04841 524 HDV-YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEV 602 (903)
T ss_pred hcc-hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh
Confidence 533 3345678999999999999999999999999999998766666666677888899999999999999999998877
Q ss_pred HH
Q 011692 306 CK 307 (479)
Q Consensus 306 ~k 307 (479)
.+
T Consensus 603 ~~ 604 (903)
T PRK04841 603 LS 604 (903)
T ss_pred hh
Confidence 54
No 60
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=98.39 E-value=2.8e-06 Score=98.53 Aligned_cols=164 Identities=23% Similarity=0.185 Sum_probs=148.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCC
Q 011692 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQ 141 (479)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~ 141 (479)
+..++......|...+.++.|.+|.+ ..+++.++..+||.+||+++..|-.+.+.+..+
T Consensus 928 ~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~-------------------- 986 (1236)
T KOG1839|consen 928 TVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRL-------------------- 986 (1236)
T ss_pred ccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhh--------------------
Confidence 34678899999999999999999999 999999999999999999999999999888765
Q ss_pred CCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHH
Q 011692 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARA 221 (479)
Q Consensus 142 ~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~ 221 (479)
+|++.|..+-..|..
T Consensus 987 -----------------------------------------------------------------~d~~~Ai~~~~ka~i 1001 (1236)
T KOG1839|consen 987 -----------------------------------------------------------------GDNQEAIAQQRKACI 1001 (1236)
T ss_pred -----------------------------------------------------------------cchHHHHHhccccee
Confidence 345667777788999
Q ss_pred HHHHhcC-CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHH
Q 011692 222 IAEKHWG-DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQ 300 (479)
Q Consensus 222 Iyek~~~-~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~e 300 (479)
|++|..+ ++++.+..|.+|+..++..++-..|+..+.+++.+..-.+|++||..|.+..+|+..+...++++.|+.+.+
T Consensus 1002 i~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le 1081 (1236)
T KOG1839|consen 1002 ISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLE 1081 (1236)
T ss_pred eechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHH
Confidence 9999887 578899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 011692 301 KAISVCKSRVQ 311 (479)
Q Consensus 301 kAL~I~k~rl~ 311 (479)
.|+.+-+..+.
T Consensus 1082 ~A~a~~~~v~g 1092 (1236)
T KOG1839|consen 1082 SALAKNKKVLG 1092 (1236)
T ss_pred HHHHHHhhhcC
Confidence 99996555444
No 61
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.39 E-value=1.4e-05 Score=69.96 Aligned_cols=100 Identities=15% Similarity=0.120 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..++.+|..++..|+|.+|..+|.+++.+ +|....+++.+|.+++..
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~------------------------ 64 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQML------------------------ 64 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHH------------------------
Confidence 456889999999999999999999999987 688889999999999876
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
+++..|..+|+.++.+
T Consensus 65 -------------------------------------------------------------~~~~~A~~~~~~~~~~--- 80 (135)
T TIGR02552 65 -------------------------------------------------------------KEYEEAIDAYALAAAL--- 80 (135)
T ss_pred -------------------------------------------------------------HHHHHHHHHHHHHHhc---
Confidence 3455676667666554
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
.+.....|..+|.++...|+|++|+..|++++++..
T Consensus 81 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 81 ----DPDDPRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred ----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 245678999999999999999999999999999853
No 62
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.38 E-value=7.9e-06 Score=89.30 Aligned_cols=142 Identities=18% Similarity=0.112 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCC
Q 011692 65 FADELMEKGTNALKESD---YGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQ 141 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gd---yeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~ 141 (479)
.|-.|+-+|..++..++ +..|++||++|+++ .|..+.+|-.++.++...... . +
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~-----~--~-------- 394 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQ-----Q--P-------- 394 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhc-----C--C--------
Confidence 57788889988877655 89999999999999 899999998888777543110 0 0
Q ss_pred CCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHH
Q 011692 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARA 221 (479)
Q Consensus 142 ~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~ 221 (479)
.+..++..+...++.+..
T Consensus 395 --------------------------------------------------------------~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 395 --------------------------------------------------------------LDEKQLAALSTELDNIVA 412 (517)
T ss_pred --------------------------------------------------------------ccHHHHHHHHHHHHHhhh
Confidence 001234445444443332
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011692 222 IAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 301 (479)
Q Consensus 222 Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ek 301 (479)
+- ..+....+|..+|.++...|+|++|...|++|+.+.. . +.+|+.+|.+|.+.|++++|+++|++
T Consensus 413 l~-----~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p--------s-~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 413 LP-----ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM--------S-WLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred cc-----cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--------C-HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 21 1122357899999999999999999999999999972 1 68999999999999999999999999
Q ss_pred HHHH
Q 011692 302 AISV 305 (479)
Q Consensus 302 AL~I 305 (479)
|+.+
T Consensus 479 A~~L 482 (517)
T PRK10153 479 AFNL 482 (517)
T ss_pred HHhc
Confidence 9975
No 63
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.37 E-value=2e-05 Score=90.41 Aligned_cols=152 Identities=11% Similarity=0.024 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..+..+|..++..|+|++|..+|.+++.+.. .+|..+.. +.+++++|.+++..
T Consensus 491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~-~~g~~~~~-~~~~~~la~~~~~~------------------------ 544 (903)
T PRK04841 491 IVATSVLGEVHHCKGELARALAMMQQTEQMAR-QHDVYHYA-LWSLLQQSEILFAQ------------------------ 544 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-hhcchHHH-HHHHHHHHHHHHHC------------------------
Confidence 44567789999999999999999999999866 45655544 44677888887654
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
++++.|...++.++.+..+
T Consensus 545 -------------------------------------------------------------G~~~~A~~~~~~al~~~~~ 563 (903)
T PRK04841 545 -------------------------------------------------------------GFLQAAYETQEKAFQLIEE 563 (903)
T ss_pred -------------------------------------------------------------CCHHHHHHHHHHHHHHHHH
Confidence 5677888888888888877
Q ss_pred hcC-CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 226 HWG-DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 226 ~~~-~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
... ..+..+.++..+|.+++..|++++|...+++++.+..... .+..+.++..+|.++...|++++|..++++++.
T Consensus 564 ~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 564 QHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ---PQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred hccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 533 2233456688899999999999999999999999987543 234567888999999999999999999999988
Q ss_pred HHH
Q 011692 305 VCK 307 (479)
Q Consensus 305 I~k 307 (479)
+..
T Consensus 641 ~~~ 643 (903)
T PRK04841 641 LLG 643 (903)
T ss_pred HHh
Confidence 754
No 64
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.36 E-value=1.5e-05 Score=80.89 Aligned_cols=171 Identities=12% Similarity=-0.039 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCcc
Q 011692 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDD 147 (479)
Q Consensus 68 ~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de 147 (479)
.+..+|..++..|+|++|..+|.++++. +|....++.. +.+++..+...... ... .
T Consensus 45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~-~~~~~~~~~~~~~~-~~~--------------~ 100 (355)
T cd05804 45 RAHVEALSAWIAGDLPKALALLEQLLDD--------YPRDLLALKL-HLGAFGLGDFSGMR-DHV--------------A 100 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHH-hHHHHHhcccccCc-hhH--------------H
Confidence 4566888999999999999999999986 6766666665 66666554321100 000 0
Q ss_pred ccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhc
Q 011692 148 SVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHW 227 (479)
Q Consensus 148 ~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~ 227 (479)
...... .......... - -..+......++++.|..+++.++.+
T Consensus 101 ~~l~~~-----------------~~~~~~~~~~---~------------~~~a~~~~~~G~~~~A~~~~~~al~~----- 143 (355)
T cd05804 101 RVLPLW-----------------APENPDYWYL---L------------GMLAFGLEEAGQYDRAEEAARRALEL----- 143 (355)
T ss_pred HHHhcc-----------------CcCCCCcHHH---H------------HHHHHHHHHcCCHHHHHHHHHHHHhh-----
Confidence 000000 0000000000 0 00000012235566666555555443
Q ss_pred CCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 228 GDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 228 ~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.+..+.+|..||.++.+.|++++|+..|++++.+... +.......|+.++.+|..+|++++|+.+|++++..
T Consensus 144 --~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 144 --NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred --CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 3344778999999999999999999999999987643 22233567889999999999999999999998643
No 65
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.36 E-value=1.1e-06 Score=88.60 Aligned_cols=99 Identities=19% Similarity=0.097 Sum_probs=80.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
.+|+.|...|..|+ ...+.-|--|.+-+-+|+++|.|+.|+.+.++||.|-.. ...+|.+||++|
T Consensus 95 ~~Y~eAv~kY~~AI-------~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~--------yskay~RLG~A~ 159 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAI-------ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH--------YSKAYGRLGLAY 159 (304)
T ss_pred hhHHHHHHHHHHHH-------hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH--------HHHHHHHHHHHH
Confidence 55666665555555 345667888999999999999999999999999999554 469999999999
Q ss_pred HcCCChhHHHHHHHHHHHH------HHHHHHHHHHHHhhh
Q 011692 287 EIGSKPQEAIPYCQKAISV------CKSRVQRLLNEVKSL 320 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I------~k~rl~~l~~~l~~~ 320 (479)
.-+|+|.+|++.|+|||+| ++..|...+..+...
T Consensus 160 ~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEP 199 (304)
T ss_pred HccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence 9999999999999999976 566666666555544
No 66
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.33 E-value=1.7e-06 Score=90.19 Aligned_cols=85 Identities=16% Similarity=0.171 Sum_probs=74.0
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++|+.|.+.|+.|+.+ .+..+.+|.++|.+++.+|+|++|+.+|+++|.+.. ..+.+|++||.+|
T Consensus 16 ~~~~~Ai~~~~~Al~~-------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P--------~~~~a~~~lg~~~ 80 (356)
T PLN03088 16 DDFALAVDLYTQAIDL-------DPNNAELYADRAQANIKLGNFTEAVADANKAIELDP--------SLAKAYLRKGTAC 80 (356)
T ss_pred CCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------CCHHHHHHHHHHH
Confidence 6788888888877754 345678999999999999999999999999999854 3368899999999
Q ss_pred HcCCChhHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~ 306 (479)
..+|+|++|+.+|+++|.+.
T Consensus 81 ~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhC
Confidence 99999999999999999874
No 67
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.30 E-value=1.4e-05 Score=74.32 Aligned_cols=103 Identities=13% Similarity=0.118 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCC
Q 011692 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQG 142 (479)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~ 142 (479)
-+..+.+...|..++..|+|++|..+|+-.|.+ .|.+++.||++|.++..+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~--------------------- 82 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQ--------------------- 82 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHH---------------------
Confidence 345778889999999999999999999999999 899999999999999775
Q ss_pred CCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHH
Q 011692 143 SDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI 222 (479)
Q Consensus 143 ~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~I 222 (479)
++|+.|.+.|.+|..+
T Consensus 83 ----------------------------------------------------------------g~~~~AI~aY~~A~~L 98 (157)
T PRK15363 83 ----------------------------------------------------------------KHWGEAIYAYGRAAQI 98 (157)
T ss_pred ----------------------------------------------------------------hhHHHHHHHHHHHHhc
Confidence 3577777777777654
Q ss_pred HHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 223 AEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 223 yek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
.++-...|.++|.+++..|+.+.|...|+.|+.+.-
T Consensus 99 -------~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 99 -------KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred -------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 345678999999999999999999999999999983
No 68
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.30 E-value=2.3e-06 Score=90.93 Aligned_cols=71 Identities=11% Similarity=0.235 Sum_probs=63.1
Q ss_pred cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 230 SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 230 ~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.+..+..|++||.+|..+|+|++|+..|++||+|. |++.....+|||||.||..+|++++|+.+|++||++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-----Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-----PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35678899999999999999999999999999995 344444467999999999999999999999999997
No 69
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=5e-06 Score=86.91 Aligned_cols=101 Identities=19% Similarity=0.196 Sum_probs=84.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++|..|.+.|-.|+.|--. +..-.+.+|.+++.|++.+|+..+||.+...||.|-..++ .+|.+.|.||
T Consensus 263 G~y~~A~E~Yteal~idP~---n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syi--------kall~ra~c~ 331 (486)
T KOG0550|consen 263 GNYRKAYECYTEALNIDPS---NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYI--------KALLRRANCH 331 (486)
T ss_pred cchhHHHHHHHHhhcCCcc---ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHH--------HHHHHHHHHH
Confidence 7899999888888876422 3345799999999999999999999999999999977764 9999999999
Q ss_pred HcCCChhHHHHHHHHHHHHHH-----HHHHHHHHHHh
Q 011692 287 EIGSKPQEAIPYCQKAISVCK-----SRVQRLLNEVK 318 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~k-----~rl~~l~~~l~ 318 (479)
..+++|++|++.|++|+..-+ ..+.+.+.+|+
T Consensus 332 l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALK 368 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 999999999999999998744 34444555555
No 70
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.27 E-value=3.7e-06 Score=68.83 Aligned_cols=82 Identities=21% Similarity=0.232 Sum_probs=62.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|..+++........ .. ...++..||.+++.+|+|++|+..+++ +.+.... ..+++.+|.||
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~--------~~~~~l~a~~~ 68 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPT----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN--------PDIHYLLARCL 68 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCG----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH--------HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCC----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC--------HHHHHHHHHHH
Confidence 5777787777766554321 11 455777899999999999999999999 5554432 58888999999
Q ss_pred HcCCChhHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKA 302 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekA 302 (479)
..+++|++|+.+|++|
T Consensus 69 ~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 69 LKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHTT-HHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHhcC
Confidence 9999999999999886
No 71
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.27 E-value=1.5e-06 Score=61.17 Aligned_cols=42 Identities=29% Similarity=0.372 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 011692 233 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRH 274 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~ 274 (479)
++.++++||.+|..+|+|++|+..|++++.|+++++|++||.
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 478999999999999999999999999999999999999984
No 72
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.26 E-value=8.2e-06 Score=62.96 Aligned_cols=97 Identities=25% Similarity=0.331 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCcc
Q 011692 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDD 147 (479)
Q Consensus 68 ~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de 147 (479)
.++.+|..++.+|+|++|+.+|.+++.+ .|....+++.+|.+++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-------------------------- 47 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKL-------------------------- 47 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHH--------------------------
Confidence 4678999999999999999999999987 344457889999998875
Q ss_pred ccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhc
Q 011692 148 SVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHW 227 (479)
Q Consensus 148 ~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~ 227 (479)
++++.|..+|+.+..+..
T Consensus 48 -----------------------------------------------------------~~~~~a~~~~~~~~~~~~--- 65 (100)
T cd00189 48 -----------------------------------------------------------GKYEEALEDYEKALELDP--- 65 (100)
T ss_pred -----------------------------------------------------------HHHHHHHHHHHHHHhCCC---
Confidence 345567777766665432
Q ss_pred CCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 011692 228 GDSMEKVDILSALAEVALEREDIETSLSDYQKALTIL 264 (479)
Q Consensus 228 ~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~ 264 (479)
....++..+|.++...++++.|+..|.+++.+.
T Consensus 66 ----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 66 ----DNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred ----cchhHHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 223789999999999999999999999988653
No 73
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=6.6e-06 Score=88.65 Aligned_cols=171 Identities=22% Similarity=0.218 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCC--CCCCcCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVS--VPKKEGDSQQGS 143 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~--~~~~~~e~~~~~ 143 (479)
+..++.-|.-++-.|+|.+|..+|++|..| .|..++++..||.++...+..+..+-.. +.+.
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-------- 375 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-------- 375 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--------
Confidence 556788888889999999999999999998 7888999999999997654332211000 0000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
+.+. ..... ..+- .----+++.+|-.+|..|..|+
T Consensus 376 ------------------~~G~--------hlP~L---Ylgm----------------ey~~t~n~kLAe~Ff~~A~ai~ 410 (611)
T KOG1173|consen 376 ------------------MPGC--------HLPSL---YLGM----------------EYMRTNNLKLAEKFFKQALAIA 410 (611)
T ss_pred ------------------ccCC--------cchHH---HHHH----------------HHHHhccHHHHHHHHHHHHhcC
Confidence 0000 00000 0000 0001245666666666666654
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
|.---+++-||.|....+.|.+|+.+|+++|...+.++. +.+.-.-++.|||.+|.++++|++||.+||+||
T Consensus 411 -------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~-e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL 482 (611)
T KOG1173|consen 411 -------PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN-EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL 482 (611)
T ss_pred -------CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc-cccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 223347889999999999999999999999966665554 444677889999999999999999999999999
Q ss_pred HH
Q 011692 304 SV 305 (479)
Q Consensus 304 ~I 305 (479)
.+
T Consensus 483 ~l 484 (611)
T KOG1173|consen 483 LL 484 (611)
T ss_pred Hc
Confidence 75
No 74
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.24 E-value=4.1e-06 Score=90.34 Aligned_cols=131 Identities=14% Similarity=0.125 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
++-...+|..|+-.|+|++|++||+.||.. .|....+++.||-+|-.-
T Consensus 430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~------------------------ 477 (579)
T KOG1125|consen 430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANG------------------------ 477 (579)
T ss_pred hhHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCC------------------------
Confidence 455668999999999999999999999998 799999999999888431
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
+....|...|.+|+
T Consensus 478 -------------------------------------------------------------~~s~EAIsAY~rAL----- 491 (579)
T KOG1125|consen 478 -------------------------------------------------------------NRSEEAISAYNRAL----- 491 (579)
T ss_pred -------------------------------------------------------------cccHHHHHHHHHHH-----
Confidence 11223444444444
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHH--HHHHHHHHHHHcCCChhHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIA--ELNFRICLCLEIGSKPQEAI 296 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iA--ea~~~LG~ay~~~g~~eeAi 296 (479)
..+|..+++..+||..|+.+|.|.+|+.+|-.||.|+++......--.+ .++-.|=+++...++.+-+.
T Consensus 492 --qLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 492 --QLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred --hcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 4467899999999999999999999999999999999996543221111 22333335555555555343
No 75
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.23 E-value=1.6e-05 Score=90.60 Aligned_cols=129 Identities=14% Similarity=0.005 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..+..+|..+...|+|.+|+.+|.+++++ .|....+++.+|.+|+..
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~l~~~------------------------ 96 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSL--------EPQNDDYQRGLILTLADA------------------------ 96 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHC------------------------
Confidence 344777788888888888888888888877 577777777777777643
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
++++.|..+|+.++..
T Consensus 97 -------------------------------------------------------------g~~~eA~~~l~~~l~~--- 112 (765)
T PRK10049 97 -------------------------------------------------------------GQYDEALVKAKQLVSG--- 112 (765)
T ss_pred -------------------------------------------------------------CCHHHHHHHHHHHHHh---
Confidence 3566677666666543
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
.+..+. |..||.++...|++++|+..|++++++.... ..+++.++.++...+.+++|+..+++++
T Consensus 113 ----~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~--------~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 113 ----APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQT--------QQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred ----CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 234566 9999999999999999999999999985432 5788889999999999999998888544
No 76
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.21 E-value=3.8e-06 Score=65.16 Aligned_cols=60 Identities=20% Similarity=0.292 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 238 SALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 238 ~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
+.+|.+++..|+|++|+..|+++|+.. |.-+.+++.||.||..+|++++|+.+|++++.+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~--------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQD--------PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCS--------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 368999999999999999999998764 445799999999999999999999999999875
No 77
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.16 E-value=2.4e-05 Score=88.66 Aligned_cols=94 Identities=13% Similarity=0.127 Sum_probs=76.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
+||+.+|.+.+-|..-- ....-.++.|+.||..|..+|+|++|-.+|.+++..-. ++ ....|+.||..|
T Consensus 284 ~dy~~v~~la~~ai~~t----~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~-----d~--~~l~~~GlgQm~ 352 (1018)
T KOG2002|consen 284 KDYERVWHLAEHAIKNT----ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN-----DN--FVLPLVGLGQMY 352 (1018)
T ss_pred ccHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC-----CC--ccccccchhHHH
Confidence 68999998776665432 12345789999999999999999999999999987632 22 457899999999
Q ss_pred HcCCChhHHHHHHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVCKSRVQ 311 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~k~rl~ 311 (479)
...|+++.|+-+|++.+...+...+
T Consensus 353 i~~~dle~s~~~fEkv~k~~p~~~e 377 (1018)
T KOG2002|consen 353 IKRGDLEESKFCFEKVLKQLPNNYE 377 (1018)
T ss_pred HHhchHHHHHHHHHHHHHhCcchHH
Confidence 9999999999999999998875443
No 78
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=3.2e-05 Score=82.03 Aligned_cols=80 Identities=19% Similarity=0.157 Sum_probs=67.6
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHH
Q 011692 219 ARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPY 298 (479)
Q Consensus 219 Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~ 298 (479)
|+--|+|.....|.=...+..||++|..+++.++|+.+|.+|+..-.- -..+|++||..|+.++++++|..+
T Consensus 417 aLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt--------e~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 417 ALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT--------EGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc--------chHHHHHHHHHHHHHHhHHHHHHH
Confidence 455566665556666789999999999999999999999999876432 247899999999999999999999
Q ss_pred HHHHHHHH
Q 011692 299 CQKAISVC 306 (479)
Q Consensus 299 ~ekAL~I~ 306 (479)
|++-+.+.
T Consensus 489 yek~v~~~ 496 (559)
T KOG1155|consen 489 YEKYVEVS 496 (559)
T ss_pred HHHHHHHH
Confidence 99999854
No 79
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=0.00022 Score=74.70 Aligned_cols=64 Identities=17% Similarity=0.100 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.-||+||+-+++.+.+|..|+....++|.+.... .-++|+-|.||..+++|+.|+..|++++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N--------~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNN--------VKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc--------hhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4589999999999999999999999999987655 489999999999999999999999999865
No 80
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=1.8e-05 Score=84.26 Aligned_cols=50 Identities=22% Similarity=0.229 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (479)
..|..|.-+|.-++-.|++..|-..|..+..+ +|..-.+|...|-+|...
T Consensus 324 ~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l--------~~~~~~lyI~~a~~y~d~ 373 (606)
T KOG0547|consen 324 YMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL--------DPAFNSLYIKRAAAYADE 373 (606)
T ss_pred HHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc--------CcccchHHHHHHHHHhhh
Confidence 34788999999999999999999999999998 677777788888888764
No 81
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.07 E-value=9.3e-05 Score=71.45 Aligned_cols=44 Identities=36% Similarity=0.566 Sum_probs=39.2
Q ss_pred CCccCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 011692 52 GAIADGEREKTVEFADELMEKGTNALKESDYGEAAECFSRALEI 95 (479)
Q Consensus 52 ~~~~~~~~~~~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei 95 (479)
.-.+|+++.+.++.++.|...|+.+|+.|+|++|...|++||++
T Consensus 81 ~i~~deek~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~ 124 (271)
T KOG4234|consen 81 KIFSDEEKDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALES 124 (271)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHh
Confidence 34556677777889999999999999999999999999999998
No 82
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.04 E-value=8.5e-06 Score=57.19 Aligned_cols=41 Identities=29% Similarity=0.279 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChh
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALE 106 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe 106 (479)
|..|.++|..++.+|+|++|..+|.++++++.++||+.||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 67899999999999999999999999999999999999995
No 83
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.04 E-value=7.6e-05 Score=84.26 Aligned_cols=133 Identities=9% Similarity=-0.027 Sum_probs=103.3
Q ss_pred HHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 67 DELMEKG-TNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 67 ~~L~~~G-~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
.++..+. ...-..+....+.+.+-+++.+... -|..+++|+++|.++...+
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~La~i~~~~g----------------------- 100 (694)
T PRK15179 49 RELLQQARQVLERHAAVHKPAAALPELLDYVRR-----YPHTELFQVLVARALEAAH----------------------- 100 (694)
T ss_pred HHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHh-----ccccHHHHHHHHHHHHHcC-----------------------
Confidence 3444444 2344556666777777777775432 3667899999999998863
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
.++.|..+|+.+..+
T Consensus 101 --------------------------------------------------------------~~~ea~~~l~~~~~~--- 115 (694)
T PRK15179 101 --------------------------------------------------------------RSDEGLAVWRGIHQR--- 115 (694)
T ss_pred --------------------------------------------------------------CcHHHHHHHHHHHhh---
Confidence 334456666666554
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
.|+.+.++.+++.+....++|++|+..++++|.+-.. -+..|+.+|.++...|+|++|+.+|++++.
T Consensus 116 ----~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~--------~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 116 ----FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS--------SAREILLEAKSWDEIGQSEQADACFERLSR 182 (694)
T ss_pred ----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC--------CHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 4678899999999999999999999999999987433 369999999999999999999999999996
No 84
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.03 E-value=4.5e-05 Score=59.56 Aligned_cols=49 Identities=31% Similarity=0.478 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (479)
.|..+..+|..++..|+|++|+.+|.+|+++ +|..+.+|+++|.+++.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~ 50 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKL 50 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHh
Confidence 3678999999999999999999999999999 899999999999999986
No 85
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.03 E-value=3.4e-05 Score=63.11 Aligned_cols=83 Identities=18% Similarity=0.274 Sum_probs=63.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCccccccccCCCCC
Q 011692 79 ESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAVNGESS 158 (479)
Q Consensus 79 ~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de~~~~~~~~e~a 158 (479)
+|+|+.|+.+|.++++..-. .+ ....+|++|.+|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~------------------------------------- 38 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQ------------------------------------- 38 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHT-------------------------------------
T ss_pred CccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHC-------------------------------------
Confidence 68999999999999998311 22 667888899999985
Q ss_pred cccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcCCcchHHHHHH
Q 011692 159 TASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVDILS 238 (479)
Q Consensus 159 ~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~ 238 (479)
+++..|+++|+. ..+ .+....++.
T Consensus 39 ------------------------------------------------~~y~~A~~~~~~-~~~-------~~~~~~~~~ 62 (84)
T PF12895_consen 39 ------------------------------------------------GKYEEAIELLQK-LKL-------DPSNPDIHY 62 (84)
T ss_dssp ------------------------------------------------THHHHHHHHHHC-HTH-------HHCHHHHHH
T ss_pred ------------------------------------------------CCHHHHHHHHHH-hCC-------CCCCHHHHH
Confidence 467788877776 211 223578888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 011692 239 ALAEVALEREDIETSLSDYQKA 260 (479)
Q Consensus 239 ~LGev~le~g~yeeAl~dy~kA 260 (479)
.+|.+++++|+|++|+..|+++
T Consensus 63 l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 63 LLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999999875
No 86
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.01 E-value=6e-05 Score=85.52 Aligned_cols=215 Identities=15% Similarity=0.147 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhH-HHHHHHHHHHHHhhhhccCCcCCC--CCCCcCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALEC-VNAYYQYGRALLYKAQEEADPLVS--VPKKEGDSQQ 141 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~-A~~y~~YG~ALl~~ar~esdvLG~--~~~~~~e~~~ 141 (479)
.+..++.+|+.++++|||++|-.+|.+++.. ++.. --.||-+|..+++.+..+..++-. +.+....
T Consensus 306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--------~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~--- 374 (1018)
T KOG2002|consen 306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKA--------DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN--- 374 (1018)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--------CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc---
Confidence 5778999999999999999999999999886 3433 556677777777777666553321 1110000
Q ss_pred CCCCc-cccccccCCCCC---cc--cCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHH
Q 011692 142 GSDKD-DSVKNAVNGESS---TA--SVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKM 215 (479)
Q Consensus 142 ~~~~d-e~~~~~~~~e~a---~~--~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~ 215 (479)
+-+ -.+.+-.....+ +. ..+.-..+.......+.... =+.+. -=+..|...++..
T Consensus 375 --~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~----------------l~laq-l~e~~d~~~sL~~ 435 (1018)
T KOG2002|consen 375 --NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAW----------------LELAQ-LLEQTDPWASLDA 435 (1018)
T ss_pred --hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHH----------------HHHHH-HHHhcChHHHHHH
Confidence 000 000000000000 00 00000000000000000000 00000 0123556666788
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHHHcCCChh
Q 011692 216 LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDS--RHIAELNFRICLCLEIGSKPQ 293 (479)
Q Consensus 216 Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~--r~iAea~~~LG~ay~~~g~~e 293 (479)
|..|+.|+..+... --..+++++|..++.+|+|..|..+|.+|+.........+. -....+-|||+.|++..+++.
T Consensus 436 ~~~A~d~L~~~~~~--ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~ 513 (1018)
T KOG2002|consen 436 YGNALDILESKGKQ--IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTE 513 (1018)
T ss_pred HHHHHHHHHHcCCC--CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhh
Confidence 89999888877542 23679999999999999999999999999999664433332 122456899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011692 294 EAIPYCQKAISVCKSRVQ 311 (479)
Q Consensus 294 eAi~~~ekAL~I~k~rl~ 311 (479)
.|-+.|...+.-+..-|.
T Consensus 514 ~A~e~Yk~Ilkehp~YId 531 (1018)
T KOG2002|consen 514 VAEEMYKSILKEHPGYID 531 (1018)
T ss_pred HHHHHHHHHHHHCchhHH
Confidence 999999988876655443
No 87
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.01 E-value=3.4e-05 Score=77.49 Aligned_cols=85 Identities=13% Similarity=0.119 Sum_probs=70.5
Q ss_pred HHHHHHHHHhcCC---cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChh
Q 011692 217 DVARAIAEKHWGD---SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQ 293 (479)
Q Consensus 217 e~Ar~Iyek~~~~---~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~e 293 (479)
+.|+..|.+.+.. ......+|+.||.+|+..++|++|+..|++.+... |+|+...+++|+||.+|..+|+++
T Consensus 160 ~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~s~~~~dAl~klg~~~~~~g~~~ 234 (263)
T PRK10803 160 DDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PKSPKAADAMFKVGVIMQDKGDTA 234 (263)
T ss_pred HHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCcchhHHHHHHHHHHHHcCCHH
Confidence 4455555554432 33457899999999999999999999999988765 578899999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 011692 294 EAIPYCQKAISVC 306 (479)
Q Consensus 294 eAi~~~ekAL~I~ 306 (479)
+|+.+|++.+..+
T Consensus 235 ~A~~~~~~vi~~y 247 (263)
T PRK10803 235 KAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHHHC
Confidence 9999999888654
No 88
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.00 E-value=1.9e-05 Score=83.44 Aligned_cols=118 Identities=21% Similarity=0.274 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..|.++|+..|..|||++|++.|.+||.- ...|..++|++|..+-.+
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~n--------dasc~ealfniglt~e~~------------------------ 537 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNN--------DASCTEALFNIGLTAEAL------------------------ 537 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcC--------chHHHHHHHHhcccHHHh------------------------
Confidence 778899999999999999999999999985 678999999998665332
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
++|+.|+++|-.-..|+.
T Consensus 538 -------------------------------------------------------------~~ldeald~f~klh~il~- 555 (840)
T KOG2003|consen 538 -------------------------------------------------------------GNLDEALDCFLKLHAILL- 555 (840)
T ss_pred -------------------------------------------------------------cCHHHHHHHHHHHHHHHH-
Confidence 456667666555554443
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCC
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSK 291 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~ 291 (479)
.-++++..|+.||--+++-.+||+.|.++..+. |++| .++.+||..|...|+
T Consensus 556 ------nn~evl~qianiye~led~aqaie~~~q~~sli-----p~dp---~ilskl~dlydqegd 607 (840)
T KOG2003|consen 556 ------NNAEVLVQIANIYELLEDPAQAIELLMQANSLI-----PNDP---AILSKLADLYDQEGD 607 (840)
T ss_pred ------hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC-----CCCH---HHHHHHHHHhhcccc
Confidence 347788888888888888888888887776543 3444 345566666666665
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=6.1e-05 Score=80.93 Aligned_cols=162 Identities=20% Similarity=0.229 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
.+..+...|+.+..+++|+.|+.+|.++|.-++. |++-.-+-.+=+++-...+. ..++ |..++
T Consensus 297 Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt------~~~ls~lk~~Ek~~k~~e~~--a~~~--pe~A~------- 359 (539)
T KOG0548|consen 297 IAKALARLGNAYTKREDYEGAIKYYQKALTEHRT------PDLLSKLKEAEKALKEAERK--AYIN--PEKAE------- 359 (539)
T ss_pred HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC------HHHHHHHHHHHHHHHHHHHH--HhhC--hhHHH-------
Confidence 3556666889999999999999999999887544 55555554444444332111 0000 00000
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
+....+| +++ -.+||..|...|..|+.
T Consensus 360 ----------------------e~r~kGn-------e~F---------------------k~gdy~~Av~~YteAIk--- 386 (539)
T KOG0548|consen 360 ----------------------EEREKGN-------EAF---------------------KKGDYPEAVKHYTEAIK--- 386 (539)
T ss_pred ----------------------HHHHHHH-------HHH---------------------hccCHHHHHHHHHHHHh---
Confidence 0000000 011 12689999888887642
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
+ .|.-+..|.|.|-+|+.+++|..|+.|.++|+++ +|.....|++-|.|+..+.+|++|++.|+++++
T Consensus 387 r----~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 387 R----DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred c----CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 2567889999999999999999999999999999 455568999999999999999999999999998
Q ss_pred HHHH
Q 011692 305 VCKS 308 (479)
Q Consensus 305 I~k~ 308 (479)
.-..
T Consensus 455 ~dp~ 458 (539)
T KOG0548|consen 455 LDPS 458 (539)
T ss_pred cCch
Confidence 7544
No 90
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.0002 Score=77.11 Aligned_cols=65 Identities=25% Similarity=0.310 Sum_probs=48.0
Q ss_pred CCCCCccCCchhh-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhh
Q 011692 49 ETSGAIADGEREK-TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKA 122 (479)
Q Consensus 49 ~~~~~~~~~~~~~-~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a 122 (479)
+..+..+|..... ..+.|..+..+|+.+|..++|..|+.+|..++++ + .....+.+.+-++++++
T Consensus 206 ~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el--------~-~~it~~~n~aA~~~e~~ 271 (539)
T KOG0548|consen 206 NGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL--------A-TDITYLNNIAAVYLERG 271 (539)
T ss_pred CCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH--------h-hhhHHHHHHHHHHHhcc
Confidence 3444444443322 4456999999999999999999999999999999 3 44556666777777664
No 91
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.95 E-value=2.3e-05 Score=60.44 Aligned_cols=84 Identities=24% Similarity=0.265 Sum_probs=66.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|..+++.++.++ +....++..+|.++...++|++|+..|++++.+.... + .+++.+|.+|
T Consensus 14 ~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~---~~~~~~~~~~ 78 (100)
T cd00189 14 GDYDEALEYYEKALELD-------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN-----A---KAYYNLGLAY 78 (100)
T ss_pred hcHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-----h---hHHHHHHHHH
Confidence 45666766666665442 2233789999999999999999999999998874322 2 7899999999
Q ss_pred HcCCChhHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I 305 (479)
...+++++|+.+|++++.+
T Consensus 79 ~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 79 YKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHhHHHHHHHHHHHHcc
Confidence 9999999999999998765
No 92
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.95 E-value=0.00017 Score=75.98 Aligned_cols=68 Identities=13% Similarity=0.125 Sum_probs=59.6
Q ss_pred cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 230 SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 230 ~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
+++-+..+..+|.+++..++|++|..+|++++++... + ..|..|+.+|..+|+.++|..+|+++|.++
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-----~----~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-----A----YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----H----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4556789999999999999999999999999998532 2 557789999999999999999999998764
No 93
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.95 E-value=0.00016 Score=65.29 Aligned_cols=98 Identities=26% Similarity=0.238 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
....+.+|..++..|+|++|+..|..++.. .....-...+.+.++++++..
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-----~~d~~l~~~a~l~LA~~~~~~------------------------ 98 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALAN-----APDPELKPLARLRLARILLQQ------------------------ 98 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHHHc------------------------
Confidence 456778999999999999999999999984 122222345677788888754
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
++++.|+..|+.
T Consensus 99 -------------------------------------------------------------~~~d~Al~~L~~------- 110 (145)
T PF09976_consen 99 -------------------------------------------------------------GQYDEALATLQQ------- 110 (145)
T ss_pred -------------------------------------------------------------CCHHHHHHHHHh-------
Confidence 356667666643
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKAL 261 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL 261 (479)
. ....-...++..+|+|++..|++++|+..|++||
T Consensus 111 ~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 111 I-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred c-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 1 1233456789999999999999999999999986
No 94
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=9.8e-05 Score=78.40 Aligned_cols=142 Identities=22% Similarity=0.215 Sum_probs=113.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCcccccc
Q 011692 72 KGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKN 151 (479)
Q Consensus 72 ~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de~~~~ 151 (479)
.|+-+-..++.++|+.+|++||.+ +|....++.+.|-=+.++
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEm------------------------------ 377 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEM------------------------------ 377 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHh------------------------------
Confidence 455556678889999999999998 899999999999888876
Q ss_pred ccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcCCcc
Q 011692 152 AVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSM 231 (479)
Q Consensus 152 ~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~~~~~ 231 (479)
.+-..|.+.+.+|..|. |
T Consensus 378 -------------------------------------------------------KNt~AAi~sYRrAvdi~-------p 395 (559)
T KOG1155|consen 378 -------------------------------------------------------KNTHAAIESYRRAVDIN-------P 395 (559)
T ss_pred -------------------------------------------------------cccHHHHHHHHHHHhcC-------c
Confidence 11223556666666553 3
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH----
Q 011692 232 EKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK---- 307 (479)
Q Consensus 232 ~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k---- 307 (479)
.=-.+|.-||..|--++-.-=|+-+|++|+.++ |+++ ..+--||.||+..++.++||.+|.+|+..-.
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-----PnDs---Rlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-----PNDS---RLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-----CCch---HHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 345689999999999999999999999999875 3444 3466799999999999999999999998654
Q ss_pred --HHHHHHHHHHhhhc
Q 011692 308 --SRVQRLLNEVKSLG 321 (479)
Q Consensus 308 --~rl~~l~~~l~~~~ 321 (479)
-+|+.|-++++...
T Consensus 468 ~l~~LakLye~l~d~~ 483 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLN 483 (559)
T ss_pred HHHHHHHHHHHHHhHH
Confidence 38888888877653
No 95
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.94 E-value=0.00013 Score=83.35 Aligned_cols=126 Identities=10% Similarity=0.053 Sum_probs=103.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCcccccccc
Q 011692 74 TNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAV 153 (479)
Q Consensus 74 ~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de~~~~~~ 153 (479)
.++.-.|++++|+..|.+++.+ .|..+.+|..+|.++...
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~--------~~~~a~~~~~lA~~~~~~-------------------------------- 62 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVH--------MQLPARGYAAVAVAYRNL-------------------------------- 62 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHc--------------------------------
Confidence 4556899999999999998876 577888999999999764
Q ss_pred CCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcCCcchH
Q 011692 154 NGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEK 233 (479)
Q Consensus 154 ~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~~~~~~~ 233 (479)
++++.|.+.|+.++.+ .+.-
T Consensus 63 -----------------------------------------------------g~~~~A~~~~~~al~~-------~P~~ 82 (765)
T PRK10049 63 -----------------------------------------------------KQWQNSLTLWQKALSL-------EPQN 82 (765)
T ss_pred -----------------------------------------------------CCHHHHHHHHHHHHHh-------CCCC
Confidence 3466677777766644 2344
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 308 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~ 308 (479)
..++..||.+++..+++++|+..+++++.+.. ++ +. ++.||.+|...|++++|+.+|++++.+...
T Consensus 83 ~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P-----~~---~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~ 148 (765)
T PRK10049 83 DDYQRGLILTLADAGQYDEALVKAKQLVSGAP-----DK---AN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ 148 (765)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CC---HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 67888999999999999999999999998843 22 35 999999999999999999999999997653
No 96
>PLN02789 farnesyltranstransferase
Probab=97.89 E-value=0.00023 Score=73.48 Aligned_cols=39 Identities=5% Similarity=-0.107 Sum_probs=35.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011692 75 NALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (479)
Q Consensus 75 ~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (479)
.+...+++++|+.++.+++++ +|+...+++..|.+|..+
T Consensus 46 ~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L 84 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEAL 84 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHc
Confidence 456678999999999999998 899999999999999875
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.87 E-value=0.00026 Score=71.88 Aligned_cols=70 Identities=16% Similarity=0.093 Sum_probs=61.8
Q ss_pred CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 229 DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 229 ~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
..+....++..+|.++..+|+|++|+..|++++.+.+.. +.+|+.||.+|...|++++|+.+|++++.+.
T Consensus 109 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~--------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~ 178 (355)
T cd05804 109 ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD--------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTW 178 (355)
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc
Confidence 456677888999999999999999999999999985332 5789999999999999999999999999864
No 98
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.85 E-value=0.00031 Score=79.32 Aligned_cols=135 Identities=16% Similarity=0.201 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
.+..|+.+++.+++.|++++|..++.++... .|.+..+|+.+|.++-++|
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrG---------------------- 187 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRG---------------------- 187 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcc----------------------
Confidence 4889999999999999999999999999998 8999999999999997762
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
|.+.++...=+|
T Consensus 188 ---------------------------------------------------------------d~eK~l~~~llA----- 199 (895)
T KOG2076|consen 188 ---------------------------------------------------------------DIEKALNFWLLA----- 199 (895)
T ss_pred ---------------------------------------------------------------cHHHHHHHHHHH-----
Confidence 233332221111
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
.|+.. .--+-|..|++.+.++|++.+|+-+|.+|++...... ..+++-...|...|++..|...|.+.+.
T Consensus 200 AHL~p--~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~--------~~~~ers~L~~~~G~~~~Am~~f~~l~~ 269 (895)
T KOG2076|consen 200 AHLNP--KDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNW--------ELIYERSSLYQKTGDLKRAMETFLQLLQ 269 (895)
T ss_pred HhcCC--CChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcch--------HHHHHHHHHHHHhChHHHHHHHHHHHHh
Confidence 23321 2227899999999999999999999999998765442 6788889999999999999999999888
Q ss_pred HHH
Q 011692 305 VCK 307 (479)
Q Consensus 305 I~k 307 (479)
.+.
T Consensus 270 ~~p 272 (895)
T KOG2076|consen 270 LDP 272 (895)
T ss_pred hCC
Confidence 776
No 99
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.84 E-value=0.00016 Score=71.88 Aligned_cols=122 Identities=21% Similarity=0.240 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCcc
Q 011692 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDD 147 (479)
Q Consensus 68 ~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de 147 (479)
-|..+|+.++..|+|..|+..|.+|+.+ .|..+.+|..+|-+|.+.|
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l--------~p~d~~~~~~lgaaldq~G------------------------- 148 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARL--------APTDWEAWNLLGAALDQLG------------------------- 148 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhcc--------CCCChhhhhHHHHHHHHcc-------------------------
Confidence 4456999999999999999999999998 8999999999999998763
Q ss_pred ccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhc
Q 011692 148 SVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHW 227 (479)
Q Consensus 148 ~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~ 227 (479)
+++.|.--|..|+.++-
T Consensus 149 ------------------------------------------------------------r~~~Ar~ay~qAl~L~~--- 165 (257)
T COG5010 149 ------------------------------------------------------------RFDEARRAYRQALELAP--- 165 (257)
T ss_pred ------------------------------------------------------------ChhHHHHHHHHHHHhcc---
Confidence 33334444455554443
Q ss_pred CCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHH
Q 011692 228 GDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIP 297 (479)
Q Consensus 228 ~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~ 297 (479)
.-..+++|||-.|+-+|+++.|...+.++.. .++.+. .+-.||+++...+|++.+|..
T Consensus 166 ----~~p~~~nNlgms~~L~gd~~~A~~lll~a~l-----~~~ad~---~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 166 ----NEPSIANNLGMSLLLRGDLEDAETLLLPAYL-----SPAADS---RVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred ----CCchhhhhHHHHHHHcCCHHHHHHHHHHHHh-----CCCCch---HHHHHHHHHHhhcCChHHHHh
Confidence 3356899999999999999999988877643 233332 456799999999999988854
No 100
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.84 E-value=1.8e-05 Score=81.01 Aligned_cols=92 Identities=12% Similarity=0.133 Sum_probs=67.3
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHH
Q 011692 217 DVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAI 296 (479)
Q Consensus 217 e~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi 296 (479)
|+|+..|.|.+.....--+.|++||.+++--++|+-++..|++||....+ .-.-|+++||||.+.--.|++.-|.
T Consensus 341 E~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~-----~~~aaDvWYNlg~vaV~iGD~nlA~ 415 (478)
T KOG1129|consen 341 EMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ-----PGQAADVWYNLGFVAVTIGDFNLAK 415 (478)
T ss_pred HHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC-----cchhhhhhhccceeEEeccchHHHH
Confidence 34455555554333334567889999999999999999999999888652 2345889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011692 297 PYCQKAISVCKSRVQRL 313 (479)
Q Consensus 297 ~~~ekAL~I~k~rl~~l 313 (479)
.+|+-||.--..+-+.|
T Consensus 416 rcfrlaL~~d~~h~eal 432 (478)
T KOG1129|consen 416 RCFRLALTSDAQHGEAL 432 (478)
T ss_pred HHHHHHhccCcchHHHH
Confidence 99988876544444433
No 101
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.83 E-value=0.00029 Score=70.81 Aligned_cols=104 Identities=14% Similarity=0.050 Sum_probs=79.4
Q ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCc
Q 011692 68 ELMEKGTNA-LKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKD 146 (479)
Q Consensus 68 ~L~~~G~~~-~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~d 146 (479)
..+..+..+ +..|+|++|+..|...+..+ +.++....++||+|.+|+..
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~------------------------- 193 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNK------------------------- 193 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHc-------------------------
Confidence 345555544 56799999999999999873 33445578999999999875
Q ss_pred cccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011692 147 DSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 226 (479)
Q Consensus 147 e~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~ 226 (479)
++++.|...|......|
T Consensus 194 ------------------------------------------------------------g~~~~A~~~f~~vv~~y--- 210 (263)
T PRK10803 194 ------------------------------------------------------------GKKDDAAYYFASVVKNY--- 210 (263)
T ss_pred ------------------------------------------------------------CCHHHHHHHHHHHHHHC---
Confidence 35666766655554443
Q ss_pred cCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 227 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 227 ~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
+ .++...+++..||.++..+|++++|+..|++.++...
T Consensus 211 P-~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 211 P-KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred C-CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 2 3567899999999999999999999999998877653
No 102
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.82 E-value=0.0011 Score=63.54 Aligned_cols=148 Identities=17% Similarity=0.101 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
.+..|...|..++..|+|.+|+..|.+.... -+.++....+.|++|.+++..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~-----~P~s~~a~~A~l~la~a~y~~----------------------- 55 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDR-----YPNSPYAPQAQLMLAYAYYKQ----------------------- 55 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHT-----------------------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHc-----------------------
Confidence 3678999999999999999999999998876 356788889999999999975
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
+++..|...++.-+..|
T Consensus 56 --------------------------------------------------------------~~y~~A~~~~~~fi~~y- 72 (203)
T PF13525_consen 56 --------------------------------------------------------------GDYEEAIAAYERFIKLY- 72 (203)
T ss_dssp --------------------------------------------------------------T-HHHHHHHHHHHHHH--
T ss_pred --------------------------------------------------------------CCHHHHHHHHHHHHHHC-
Confidence 35666766555544333
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHHHHhcC---------CCChhHHHHHHHHHH
Q 011692 225 KHWGDSMEKVDILSALAEVALERE-----------DIETSLSDYQKALTILERMVE---------PDSRHIAELNFRICL 284 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g-----------~yeeAl~dy~kAL~I~~~llg---------~d~r~iAea~~~LG~ 284 (479)
+ .++.+..++..+|.+++.+. ...+|+..|+.-+.-....-- .-...+|.--+.+|.
T Consensus 73 --P-~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~ 149 (203)
T PF13525_consen 73 --P-NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIAR 149 (203)
T ss_dssp --T-T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --C-CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 34567788888888866543 334566666655543321100 002234555677888
Q ss_pred HHHcCCChhHHHHHHHHHHHHH
Q 011692 285 CLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 285 ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
-|...++|.-|+..|+..|+-+
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~y 171 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIENY 171 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHHS
T ss_pred HHHHcccHHHHHHHHHHHHHHC
Confidence 9999999999999888877543
No 103
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.00028 Score=71.75 Aligned_cols=156 Identities=15% Similarity=0.129 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCC--cCCCCCCCcCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEAD--PLVSVPKKEGDSQQGS 143 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esd--vLG~~~~~~~e~~~~~ 143 (479)
-..|.-+|..+|...+|..|++||++.+.+ ||+.+..-++|+.+|+.-++.... |+......
T Consensus 44 rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~-------- 107 (459)
T KOG4340|consen 44 RAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQAQSLYKACIYADALRVAFLLLDN-------- 107 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC--------
Confidence 346788999999999999999999999887 999999999999999987665322 11000000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHH----HHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKM----LDVA 219 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~----Le~A 219 (479)
+ .. -+..=.++-|..+ |--+
T Consensus 108 --~-~L-----------------------------------------------------~~~~lqLqaAIkYse~Dl~g~ 131 (459)
T KOG4340|consen 108 --P-AL-----------------------------------------------------HSRVLQLQAAIKYSEGDLPGS 131 (459)
T ss_pred --H-HH-----------------------------------------------------HHHHHHHHHHHhcccccCcch
Confidence 0 00 0000011111111 1123
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHH
Q 011692 220 RAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYC 299 (479)
Q Consensus 220 r~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ 299 (479)
|.+.+..++ ...|++.+++|-+...-|+|+.|+.-|+.||+.- --.+. .-|++++|+...++|..|+.+.
T Consensus 132 rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs-----Gyqpl---lAYniALaHy~~~qyasALk~i 201 (459)
T KOG4340|consen 132 RSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS-----GYQPL---LAYNLALAHYSSRQYASALKHI 201 (459)
T ss_pred HHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHhhc-----CCCch---hHHHHHHHHHhhhhHHHHHHHH
Confidence 444444432 2578999999999999999999999999998762 23343 3489999999999999999887
Q ss_pred HHHH
Q 011692 300 QKAI 303 (479)
Q Consensus 300 ekAL 303 (479)
..-|
T Consensus 202 SEIi 205 (459)
T KOG4340|consen 202 SEII 205 (459)
T ss_pred HHHH
Confidence 6544
No 104
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.81 E-value=0.00032 Score=69.72 Aligned_cols=87 Identities=21% Similarity=0.225 Sum_probs=61.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
|+.+.|...|+.|+.+ .|.-.+++..|+.++++.|+++++...+....... +.++ ..+..||.+|
T Consensus 160 G~~~~A~~~~~~al~~-------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-----~~~~---~~~~~la~~~ 224 (280)
T PF13429_consen 160 GDPDKALRDYRKALEL-------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-----PDDP---DLWDALAAAY 224 (280)
T ss_dssp CHHHHHHHHHHHHHHH--------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------HTSC---CHCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc-------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-----cCHH---HHHHHHHHHh
Confidence 4566666666666544 34456688889999999999999766666555444 2333 3567889999
Q ss_pred HcCCChhHHHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVCKS 308 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~k~ 308 (479)
..+|++++|+.+|++++.....
T Consensus 225 ~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 225 LQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHT-HHHHHHHHHHHHHHSTT
T ss_pred cccccccccccccccccccccc
Confidence 9999999999999999876553
No 105
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.80 E-value=9.8e-05 Score=76.05 Aligned_cols=52 Identities=25% Similarity=0.358 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011692 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (479)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (479)
-|..+.+|..+|+.||++|+|++|++||+++..+ .|.++..|.+-+.|||.+
T Consensus 93 LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~ 144 (536)
T KOG4648|consen 93 LLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQ 144 (536)
T ss_pred HHHhhHHHHHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHH
Confidence 3556788999999999999999999999999987 688889999999999987
No 106
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=97.79 E-value=0.00017 Score=84.17 Aligned_cols=162 Identities=18% Similarity=0.080 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
.+..|..+++.++..+++.+|+..-.+||-|.....|=.||+....|-++. |++.+..
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nla--l~~f~~~-------------------- 1029 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLA--LYEFAVK-------------------- 1029 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHH--HHHHhcc--------------------
Confidence 466777889999999999999999999999999999999999999999886 4443110
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
....|...+..|+.+..
T Consensus 1030 ---------------------------------------------------------------~~~~al~~~~ra~~l~~ 1046 (1236)
T KOG1839|consen 1030 ---------------------------------------------------------------NLSGALKSLNRALKLKL 1046 (1236)
T ss_pred ---------------------------------------------------------------CccchhhhHHHHHHhhc
Confidence 01113344445544432
Q ss_pred Hh-cCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 225 KH-WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 225 k~-~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
=. ...+|..+.+..+|+.+++-.++|+.|+.+.+.|+++.+.++++.+-..+.+|..++..+...+.+..|+.+.....
T Consensus 1047 Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1047 LSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred cccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence 22 22578899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 011692 304 SVCKSRVQ 311 (479)
Q Consensus 304 ~I~k~rl~ 311 (479)
.|++..++
T Consensus 1127 ~iy~~qlg 1134 (1236)
T KOG1839|consen 1127 GIYKEQLG 1134 (1236)
T ss_pred HHHHHhhC
Confidence 99888766
No 107
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.78 E-value=7.4e-05 Score=76.57 Aligned_cols=159 Identities=16% Similarity=0.099 Sum_probs=119.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--CCCCCCCcCCCCCCCCCcc
Q 011692 70 MEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQGSDKDD 147 (479)
Q Consensus 70 ~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv--LG~~~~~~~e~~~~~~~de 147 (479)
...|+.++..|-|.+|...|+.+|+- -++.+.|.++.++|..+-|.+..+ +|....
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---------~~~~dTfllLskvY~ridQP~~AL~~~~~gld------------- 284 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD------------- 284 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh-------------
Confidence 46899999999999999999999985 345678999999998875443331 111100
Q ss_pred ccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhc
Q 011692 148 SVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHW 227 (479)
Q Consensus 148 ~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~ 227 (479)
...++.+- -=..-....|++..+.|.++|...+
T Consensus 285 -----------------------------~fP~~VT~------------------l~g~ARi~eam~~~~~a~~lYk~vl 317 (478)
T KOG1129|consen 285 -----------------------------SFPFDVTY------------------LLGQARIHEAMEQQEDALQLYKLVL 317 (478)
T ss_pred -----------------------------cCCchhhh------------------hhhhHHHHHHHHhHHHHHHHHHHHH
Confidence 00000000 0001355677788888888888887
Q ss_pred CCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 228 GDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 228 ~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
..++..+++.-.+|.-|+-.++-+-|+.+|++-|.+-- .++ +.+.|||+|+.+.++|+-++..|++|+..
T Consensus 318 k~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-----~sp---eLf~NigLCC~yaqQ~D~~L~sf~RAlst 387 (478)
T KOG1129|consen 318 KLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-----QSP---ELFCNIGLCCLYAQQIDLVLPSFQRALST 387 (478)
T ss_pred hcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-----CCh---HHHhhHHHHHHhhcchhhhHHHHHHHHhh
Confidence 76666777888899999999999999999999998844 343 78999999999999999999999999975
No 108
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.77 E-value=0.0018 Score=64.24 Aligned_cols=62 Identities=11% Similarity=-0.020 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHH
Q 011692 233 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYC 299 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ 299 (479)
++.--+.+|..|+..|+|.-|+.-|+..++-. |+.+..-++++.|..+|..+|..++|....
T Consensus 174 la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 174 LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 56666678888999999999999988887643 467788999999999999999999886654
No 109
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.75 E-value=0.00044 Score=65.66 Aligned_cols=36 Identities=25% Similarity=0.178 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhc
Q 011692 88 CFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQE 124 (479)
Q Consensus 88 ~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~ 124 (479)
+|.+|++.....|= .+|.-++.+++.|.+|+++++.
T Consensus 6 ~FE~ark~aea~y~-~nP~DadnL~~WG~ALLELAqf 41 (186)
T PF06552_consen 6 FFEHARKKAEAAYA-KNPLDADNLTNWGGALLELAQF 41 (186)
T ss_dssp HHHHHHHHHHHHHH-H-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hCcHhHHHHHHHHHHHHHHHhc
Confidence 34444444444432 2788899999999999999766
No 110
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.71 E-value=0.00049 Score=79.31 Aligned_cols=150 Identities=17% Similarity=0.101 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
...+..+...+...++|++|+.+...+++. +|.-..+||.+|..+++..+.....+-+..+.
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~---------- 92 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLLNLIDS---------- 92 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhhhhhhh----------
Confidence 456777888888999999999999988887 89999999999997776655433322111000
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
+. ...++...-.++..-..
T Consensus 93 -------------------------------------~~--------------------~~~~~~~ve~~~~~i~~---- 111 (906)
T PRK14720 93 -------------------------------------FS--------------------QNLKWAIVEHICDKILL---- 111 (906)
T ss_pred -------------------------------------cc--------------------cccchhHHHHHHHHHHh----
Confidence 00 01222222111121111
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
....-.+|+.||.+|-.+|++++|...|+++|++.. .=+.++.|+|..|... ++++|+.++.+|+..
T Consensus 112 ----~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~--------~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 112 ----YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADR--------DNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred ----hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc--------ccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 122334899999999999999999999999999972 3368999999999999 999999999999988
Q ss_pred HH
Q 011692 306 CK 307 (479)
Q Consensus 306 ~k 307 (479)
+-
T Consensus 179 ~i 180 (906)
T PRK14720 179 FI 180 (906)
T ss_pred HH
Confidence 64
No 111
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.69 E-value=8.8e-05 Score=58.43 Aligned_cols=60 Identities=25% Similarity=0.321 Sum_probs=53.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 011692 240 LAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 240 LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k 307 (479)
|..+|+..++|+.|+..+++++.+... -...|+.+|.+|..+|+|.+|+..|++++++..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~--------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPD--------DPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcc--------cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 568999999999999999999999433 358899999999999999999999999997643
No 112
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.68 E-value=0.00048 Score=76.84 Aligned_cols=132 Identities=22% Similarity=0.175 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
-.-.+..+..+...++-++|.-|+.+|-.| -|.++..||.-|..+..++
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--------~~l~~~~~~~~G~~~~~~~----------------------- 698 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKI--------DPLSASVYYLRGLLLEVKG----------------------- 698 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhc--------chhhHHHHHHhhHHHHHHH-----------------------
Confidence 334456777888889999999999999998 4999999999999998762
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
.+..|.+.|..|+.+
T Consensus 699 --------------------------------------------------------------~~~EA~~af~~Al~l--- 713 (799)
T KOG4162|consen 699 --------------------------------------------------------------QLEEAKEAFLVALAL--- 713 (799)
T ss_pred --------------------------------------------------------------hhHHHHHHHHHHHhc---
Confidence 233455555555543
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLS--DYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~--dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
.|....+...||.++++.|+-.-|.. .+..+|++.... -+++|+||.++..+|+.++|.++|+.|+
T Consensus 714 ----dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n--------~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 714 ----DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLN--------HEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred ----CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCC--------HHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 45667789999999999998777777 888888885433 3999999999999999999999999998
Q ss_pred HH
Q 011692 304 SV 305 (479)
Q Consensus 304 ~I 305 (479)
.+
T Consensus 782 qL 783 (799)
T KOG4162|consen 782 QL 783 (799)
T ss_pred hh
Confidence 65
No 113
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00067 Score=71.38 Aligned_cols=80 Identities=21% Similarity=0.244 Sum_probs=68.5
Q ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH
Q 011692 231 MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRV 310 (479)
Q Consensus 231 ~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl 310 (479)
++...++-.-|.-....|+|..|-+.|..+|.|-+. +--..|.+|+|++.++..+|+..+||.-|..|+.|-...|
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syi 321 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYI 321 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHH
Confidence 445667778899999999999999999999999765 3345789999999999999999999999999999877766
Q ss_pred HHHH
Q 011692 311 QRLL 314 (479)
Q Consensus 311 ~~l~ 314 (479)
..|.
T Consensus 322 kall 325 (486)
T KOG0550|consen 322 KALL 325 (486)
T ss_pred HHHH
Confidence 6553
No 114
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.0019 Score=63.84 Aligned_cols=90 Identities=17% Similarity=0.117 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhcCCCChhHH-HHHHHHHHH
Q 011692 208 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALER-EDIETSLSDYQKALTILERMVEPDSRHIA-ELNFRICLC 285 (479)
Q Consensus 208 dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~-g~yeeAl~dy~kAL~I~~~llg~d~r~iA-ea~~~LG~a 285 (479)
+-+.|..+|+.|..||-....- ...|.-|..||++|-.- .+|++||.+|+.|-+..+. +++...| .++.+.+.-
T Consensus 88 ~~~eAv~cL~~aieIyt~~Grf-~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~---ees~ssANKC~lKvA~y 163 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDMGRF-TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG---EESVSSANKCLLKVAQY 163 (288)
T ss_pred ChHHHHHHHHHHHHHHHhhhHH-HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc---hhhhhhHHHHHHHHHHH
Confidence 3456888999999999776432 23578899999999655 8999999999999988763 2332222 234444444
Q ss_pred HHcCCChhHHHHHHHH
Q 011692 286 LEIGSKPQEAIPYCQK 301 (479)
Q Consensus 286 y~~~g~~eeAi~~~ek 301 (479)
-..+++|.+||..|++
T Consensus 164 aa~leqY~~Ai~iyeq 179 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQ 179 (288)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455566666666655
No 115
>PRK11906 transcriptional regulator; Provisional
Probab=97.66 E-value=0.00089 Score=71.66 Aligned_cols=148 Identities=19% Similarity=0.127 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 68 ELMEKGTNALKES---DYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 68 ~L~~~G~~~~~~g---dyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
.+.-+|..++.++ ....|..+|.+|+..+ +..|+.+.+|-.+..|++..... |..
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~-----g~~------------ 314 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALH-----GKS------------ 314 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHh-----cCC------------
Confidence 5677777776655 4567888899998221 23899999999999999876422 210
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
+...+...|.+..++|..+
T Consensus 315 -----------------------------------------------------------~~~~~~~~a~~~A~rAvel-- 333 (458)
T PRK11906 315 -----------------------------------------------------------ELELAAQKALELLDYVSDI-- 333 (458)
T ss_pred -----------------------------------------------------------CchHHHHHHHHHHHHHHhc--
Confidence 0113555666555555543
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
.+.=+.++..+|-++.-.++|+.|+..|++|+.+ +|..|.+||..|+++.+.|+.++|++++++|++
T Consensus 334 -----d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 334 -----TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred -----CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 2345789999999999999999999999999988 456699999999999999999999999999998
Q ss_pred HHHHHHH
Q 011692 305 VCKSRVQ 311 (479)
Q Consensus 305 I~k~rl~ 311 (479)
+-..|++
T Consensus 401 LsP~~~~ 407 (458)
T PRK11906 401 LEPRRRK 407 (458)
T ss_pred cCchhhH
Confidence 7666655
No 116
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.64 E-value=0.0006 Score=78.50 Aligned_cols=93 Identities=10% Similarity=0.067 Sum_probs=62.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|.++|+.++ ...+.-.+++..|+.++.+.+++++|+..+++++.+.... ..+..++.++
T Consensus 116 gdyd~Aiely~kaL-------~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~---------~~~l~layL~ 179 (822)
T PRK14574 116 KRWDQALALWQSSL-------KKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTV---------QNYMTLSYLN 179 (822)
T ss_pred CCHHHHHHHHHHHH-------hhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcch---------HHHHHHHHHH
Confidence 45556655555443 3334557888899999999999999999999887774431 1222233333
Q ss_pred HcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVCKSRVQRLLN 315 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~k~rl~~l~~ 315 (479)
...+++.+|+..|+++++......+.+.+
T Consensus 180 ~~~~~~~~AL~~~ekll~~~P~n~e~~~~ 208 (822)
T PRK14574 180 RATDRNYDALQASSEAVRLAPTSEEVLKN 208 (822)
T ss_pred HhcchHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34666767999999999997654444433
No 117
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.64 E-value=0.0002 Score=55.37 Aligned_cols=45 Identities=27% Similarity=0.428 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhh
Q 011692 70 MEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKA 122 (479)
Q Consensus 70 ~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a 122 (479)
+.+|..++..|+|++|+.+|.++++. +|.+..+++.+|.+++.++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g 45 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQG 45 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcC
Confidence 46899999999999999999999997 7999999999999999863
No 118
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.63 E-value=0.0008 Score=67.45 Aligned_cols=105 Identities=20% Similarity=0.188 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..+.+.+..++..|||..|...|..-+.- .+..+..+++|||||.++|.++
T Consensus 141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg----------------------- 192 (262)
T COG1729 141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQG----------------------- 192 (262)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcc-----------------------
Confidence 344899999999999999999999988775 4778899999999999999862
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
+|..|-.+|..+.. +
T Consensus 193 --------------------------------------------------------------~y~~Aa~~f~~~~k---~ 207 (262)
T COG1729 193 --------------------------------------------------------------DYEDAAYIFARVVK---D 207 (262)
T ss_pred --------------------------------------------------------------cchHHHHHHHHHHH---h
Confidence 33334444433322 3
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTIL 264 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~ 264 (479)
.+ .+++..+.++.||.+..++++-++|...|++.++-+
T Consensus 208 ~P-~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 208 YP-KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred CC-CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 32 356778999999999999999999999998876543
No 119
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.62 E-value=0.001 Score=70.27 Aligned_cols=66 Identities=12% Similarity=0.129 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
+..+..||.+++..|+|++|..+|+++..+.. .|++ +.+..||.+|...|+.++|..+|++++...
T Consensus 335 ~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~---~p~~----~~~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 335 CCINRALGQLLMKHGEFIEAADAFKNVAACKE---QLDA----NDLAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc---CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 37889999999999999999999995444332 1122 346688999999999999999999988753
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.62 E-value=0.00059 Score=67.89 Aligned_cols=83 Identities=12% Similarity=0.089 Sum_probs=67.1
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++|..|...|.+|. ...+.-...|+.||-+|...|+|+.|-..|.++|++...- ..++.|||+.|
T Consensus 114 g~~~~A~~~~rkA~-------~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~--------p~~~nNlgms~ 178 (257)
T COG5010 114 GNFGEAVSVLRKAA-------RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE--------PSIANNLGMSL 178 (257)
T ss_pred cchHHHHHHHHHHh-------ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC--------chhhhhHHHHH
Confidence 45556655544443 3345568899999999999999999999999999997543 37789999999
Q ss_pred HcCCChhHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~ 304 (479)
...|+++.|..++.++..
T Consensus 179 ~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 179 LLRGDLEDAETLLLPAYL 196 (257)
T ss_pred HHcCCHHHHHHHHHHHHh
Confidence 999999999999877654
No 121
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.62 E-value=0.004 Score=59.71 Aligned_cols=143 Identities=15% Similarity=0.134 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
...++.+|..++..|+|..|+..|.+.+... +.||.+..++|+.|.+++...+.-. ..
T Consensus 42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P~~~~~~~A~Y~~g~~~~~~~~~~~-------~~---------- 99 (203)
T PF13525_consen 42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----PNSPKADYALYMLGLSYYKQIPGIL-------RS---------- 99 (203)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------TT-TTHHHHHHHHHHHHHHHHHHHH--------T----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCcchhhHHHHHHHHHHHhCccch-------hc----------
Confidence 4567889999999999999999999998763 5588999999999999998742200 00
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
+.|......|...|+.- ..+
T Consensus 100 ---------------------------------------------------------~~D~~~~~~A~~~~~~l---i~~ 119 (203)
T PF13525_consen 100 ---------------------------------------------------------DRDQTSTRKAIEEFEEL---IKR 119 (203)
T ss_dssp ---------------------------------------------------------T---HHHHHHHHHHHHH---HHH
T ss_pred ---------------------------------------------------------ccChHHHHHHHHHHHHH---HHH
Confidence 01123444454443333 233
Q ss_pred hcCC-------------cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCCh
Q 011692 226 HWGD-------------SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKP 292 (479)
Q Consensus 226 ~~~~-------------~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~ 292 (479)
.++. ...++.--+.+|..|+..|+|..|+..|+..|+-. |+++..-++++.|..+|..+|..
T Consensus 120 yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~ 194 (203)
T PF13525_consen 120 YPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLK 194 (203)
T ss_dssp -TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-H
T ss_pred CcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCCh
Confidence 3332 12356667788999999999999999999887764 46778889999999999999988
Q ss_pred hHH
Q 011692 293 QEA 295 (479)
Q Consensus 293 eeA 295 (479)
+.|
T Consensus 195 ~~a 197 (203)
T PF13525_consen 195 QAA 197 (203)
T ss_dssp HHH
T ss_pred HHH
Confidence 743
No 122
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00028 Score=69.69 Aligned_cols=107 Identities=20% Similarity=0.212 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCC
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~ 143 (479)
.-+..|..+|+++|.-++|..|++||++|+-+ +|-.+..|-+-..+++++-
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~--------------------- 58 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLK--------------------- 58 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhh---------------------
Confidence 34778899999999999999999999999998 8999888888888887751
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
+++..-+-..+|++
T Consensus 59 ----------------------------------------------------------------~~~~v~~dcrralq-- 72 (284)
T KOG4642|consen 59 ----------------------------------------------------------------HWEPVEEDCRRALQ-- 72 (284)
T ss_pred ----------------------------------------------------------------hhhhhhhhHHHHHh--
Confidence 12222111233332
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEP 270 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~ 270 (479)
..++++..|+.||...+....|+.||..+++|+.+.+....+
T Consensus 73 -----l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~ 114 (284)
T KOG4642|consen 73 -----LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFT 114 (284)
T ss_pred -----cChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCC
Confidence 245789999999999999999999999999999998876543
No 123
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.61 E-value=0.00068 Score=66.15 Aligned_cols=100 Identities=21% Similarity=0.097 Sum_probs=88.2
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh-----hHHHHHH
Q 011692 206 ESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSR-----HIAELNF 280 (479)
Q Consensus 206 ~~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r-----~iAea~~ 280 (479)
.-+++.|++.|.+|+.++.-....+..+|.++..|+.+|-+.++-++...++++||...++.+..++. .-+.++|
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 46899999999999999987766667899999999999999999999999999999999998764432 3467899
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 281 RICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 281 ~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
-||..+.+.|++++|+.+|.+.+..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 9999999999999999999887753
No 124
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00086 Score=70.66 Aligned_cols=83 Identities=19% Similarity=0.201 Sum_probs=73.3
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHH
Q 011692 217 DVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAI 296 (479)
Q Consensus 217 e~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi 296 (479)
|+|+..|++.+...|....+-+.++++++.-|+|.++|..+++.|.++... ..|..||.++.....|.+|+
T Consensus 421 EKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~---------~LH~~Lgd~~~A~Ne~Q~am 491 (564)
T KOG1174|consen 421 EKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV---------NLHNHLGDIMRAQNEPQKAM 491 (564)
T ss_pred HHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc---------HHHHHHHHHHHHhhhHHHHH
Confidence 667777777776677788899999999999999999999999999998654 67889999999999999999
Q ss_pred HHHHHHHHHHHH
Q 011692 297 PYCQKAISVCKS 308 (479)
Q Consensus 297 ~~~ekAL~I~k~ 308 (479)
.||+.||.+-..
T Consensus 492 ~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 492 EYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHhcCcc
Confidence 999999988643
No 125
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.0025 Score=69.63 Aligned_cols=72 Identities=17% Similarity=0.275 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh-------hHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 233 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSR-------HIAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r-------~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
.-+.++|.+-++.+.|+|.+|++.+++|++|.++.+..+++ .|+.++.+|+.+|..+|+..+|...|...|.
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~ 252 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIK 252 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 45778999999999999999999999999999988765433 4899999999999999999999998876553
No 126
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.53 E-value=0.0018 Score=66.44 Aligned_cols=87 Identities=21% Similarity=0.298 Sum_probs=69.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|.++|.+|+. ..+.-+.+-..||.|.+..|+|.+|+..|+..++- ++-.+.++.-.|-.||
T Consensus 194 ~~~d~A~~~l~kAlq-------a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-------n~~yl~evl~~L~~~Y 259 (389)
T COG2956 194 SDVDRARELLKKALQ-------ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-------NPEYLSEVLEMLYECY 259 (389)
T ss_pred hhHHHHHHHHHHHHh-------hCccceehhhhhhHHHHhccchHHHHHHHHHHHHh-------ChHHHHHHHHHHHHHH
Confidence 455556666655553 34566778889999999999999999999887765 4445679999999999
Q ss_pred HcCCChhHHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~k 307 (479)
..+|+.++.+.+..++.+.+.
T Consensus 260 ~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 260 AQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHhCCHHHHHHHHHHHHHccC
Confidence 999999999999988887653
No 127
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.52 E-value=0.00061 Score=72.35 Aligned_cols=86 Identities=23% Similarity=0.214 Sum_probs=73.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
+||+.|.++|..|+ .......++++++|..+-.+|+.++|+.+|-+...|+... ++++++|+.+|
T Consensus 504 gd~dka~~~ykeal-------~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn--------~evl~qianiy 568 (840)
T KOG2003|consen 504 GDLDKAAEFYKEAL-------NNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN--------AEVLVQIANIY 568 (840)
T ss_pred CcHHHHHHHHHHHH-------cCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHH
Confidence 67777777665554 3444577899999999999999999999999999988754 79999999999
Q ss_pred HcCCChhHHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~k 307 (479)
+.+.+..+||+.|-++..++.
T Consensus 569 e~led~aqaie~~~q~~slip 589 (840)
T KOG2003|consen 569 ELLEDPAQAIELLMQANSLIP 589 (840)
T ss_pred HHhhCHHHHHHHHHHhcccCC
Confidence 999999999999999988764
No 128
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.49 E-value=0.0023 Score=67.57 Aligned_cols=76 Identities=18% Similarity=0.045 Sum_probs=56.4
Q ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH---------hcC--------------CCChhHHHHHHHHHHHHH
Q 011692 231 MEKVDILSALAEVALEREDIETSLSDYQKALTILER---------MVE--------------PDSRHIAELNFRICLCLE 287 (479)
Q Consensus 231 ~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~---------llg--------------~d~r~iAea~~~LG~ay~ 287 (479)
+....++..++..+...|++++|...++++|+.... +.. ..||.-+..++.+|.++.
T Consensus 260 ~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~ 339 (398)
T PRK10747 260 RHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLM 339 (398)
T ss_pred hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 345667788888888888888888888777763210 001 124444677899999999
Q ss_pred cCCChhHHHHHHHHHHHHH
Q 011692 288 IGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 288 ~~g~~eeAi~~~ekAL~I~ 306 (479)
..+++++|..+|++++++.
T Consensus 340 ~~~~~~~A~~~le~al~~~ 358 (398)
T PRK10747 340 KHGEWQEASLAFRAALKQR 358 (398)
T ss_pred HCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999873
No 129
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.47 E-value=0.0039 Score=55.53 Aligned_cols=102 Identities=21% Similarity=0.085 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCc
Q 011692 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKD 146 (479)
Q Consensus 67 ~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~d 146 (479)
..+++.|..+-.+|+.++|+.+|.+|++. |-..+.-..+++.+|.+|..+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~L------------------------- 51 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNL------------------------- 51 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHc-------------------------
Confidence 35788999999999999999999999883 666677788999999999876
Q ss_pred cccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011692 147 DSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 226 (479)
Q Consensus 147 e~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~ 226 (479)
|.++.|..+|+.++. .+
T Consensus 52 ------------------------------------------------------------G~~deA~~~L~~~~~---~~ 68 (120)
T PF12688_consen 52 ------------------------------------------------------------GRYDEALALLEEALE---EF 68 (120)
T ss_pred ------------------------------------------------------------CCHHHHHHHHHHHHH---HC
Confidence 345567777776653 33
Q ss_pred cCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011692 227 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALT 262 (479)
Q Consensus 227 ~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~ 262 (479)
++.. -...+...++.+....|++++|+..+-.+|.
T Consensus 69 p~~~-~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 69 PDDE-LNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred CCcc-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3321 1344556688899999999999988877664
No 130
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.45 E-value=0.00022 Score=48.39 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 276 AELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 276 Aea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
|.+|++||.+|..+++|++|+.+|++||++.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 6789999999999999999999999999874
No 131
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.43 E-value=0.00084 Score=67.29 Aligned_cols=93 Identities=15% Similarity=0.098 Sum_probs=78.7
Q ss_pred hHHHHHHHH-----HHHHHHHHHhcC---CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 011692 208 DLDLAWKML-----DVARAIAEKHWG---DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELN 279 (479)
Q Consensus 208 dle~Awe~L-----e~Ar~Iyek~~~---~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~ 279 (479)
.|+.|+..+ ..|..-|..+.. .....+++|+-||+.++.+|+|+.|...|..+.+= -|+|+...+++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-----~P~s~KApdal 218 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-----YPKSPKAPDAL 218 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-----CCCCCCChHHH
Confidence 788888876 567777766644 34668999999999999999999999999988772 25788888999
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 280 FRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 280 ~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
++||+|...+++.++|...|++.+.=
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 99999999999999999999887753
No 132
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.42 E-value=0.00015 Score=56.31 Aligned_cols=56 Identities=16% Similarity=0.164 Sum_probs=47.1
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH
Q 011692 245 LEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 308 (479)
Q Consensus 245 le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~ 308 (479)
+..|+|++|+..|++++..... -..+++.|+.||...|++++|..++++.+.....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD--------NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT--------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 6789999999999999988543 3589999999999999999999999887765443
No 133
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.42 E-value=0.013 Score=58.03 Aligned_cols=52 Identities=10% Similarity=0.078 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (479)
.+..+...|..++..|+|++|++.|.+++.. | +..+....+.+++|.+++..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~----y-P~s~~a~~a~l~la~ayy~~ 82 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR----Y-PFGPYSQQVQLDLIYAYYKN 82 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----C-CCChHHHHHHHHHHHHHHhc
Confidence 3667889999999999999999999999885 2 23466667889999999875
No 134
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.41 E-value=0.00073 Score=60.23 Aligned_cols=66 Identities=17% Similarity=0.107 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 235 DILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 235 ~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.+++.+|.++-..|+.++|+..|+++|.. |.+......++.+||.+|..+|++++|+..+++++.-
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 47888999999999999999999999883 4445555689999999999999999999999888754
No 135
>PLN02789 farnesyltranstransferase
Probab=97.38 E-value=0.0054 Score=63.35 Aligned_cols=135 Identities=9% Similarity=-0.081 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 66 ADELMEKGTNALKES-DYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 66 A~~L~~~G~~~~~~g-dyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
...+..+|..+..++ +|.+|++++.+++++ +|.+..++++-|.++..+++
T Consensus 71 ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqaW~~R~~~l~~l~~--------------------- 121 (320)
T PLN02789 71 YTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQIWHHRRWLAEKLGP--------------------- 121 (320)
T ss_pred HHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHHhHHHHHHHHHcCc---------------------
Confidence 446678888888888 689999999999998 89999999999988865410
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
..+..++++++.++.+
T Consensus 122 --------------------------------------------------------------~~~~~el~~~~kal~~-- 137 (320)
T PLN02789 122 --------------------------------------------------------------DAANKELEFTRKILSL-- 137 (320)
T ss_pred --------------------------------------------------------------hhhHHHHHHHHHHHHh--
Confidence 0112234444444432
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcC---CCh----hHHHH
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIG---SKP----QEAIP 297 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~---g~~----eeAi~ 297 (479)
.++-..+|...|-+....++|++|+.+|.++|++-... ..+++++|.++... +++ ++++.
T Consensus 138 -----dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N--------~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 138 -----DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN--------NSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred -----CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc--------hhHHHHHHHHHHhccccccccccHHHHHH
Confidence 34567899999999999999999999999999985433 48899999998766 333 46788
Q ss_pred HHHHHHHHH
Q 011692 298 YCQKAISVC 306 (479)
Q Consensus 298 ~~ekAL~I~ 306 (479)
|+.++|.+.
T Consensus 205 y~~~aI~~~ 213 (320)
T PLN02789 205 YTIDAILAN 213 (320)
T ss_pred HHHHHHHhC
Confidence 887887654
No 136
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0041 Score=63.13 Aligned_cols=109 Identities=21% Similarity=0.181 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..+.-+|..++.+++|..|...|.+|.+| .|++.+++..||.+|++.+ |.
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a-------~~-------------- 206 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQA-------GQ-------------- 206 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhc-------CC--------------
Confidence 677888999999999999999999999999 7999999999999999862 00
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
.+-..+-.+|..|+
T Consensus 207 -------------------------------------------------------------~~ta~a~~ll~~al----- 220 (287)
T COG4235 207 -------------------------------------------------------------QMTAKARALLRQAL----- 220 (287)
T ss_pred -------------------------------------------------------------cccHHHHHHHHHHH-----
Confidence 01112333444443
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHI 275 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~i 275 (479)
...+.-+.+.+.||-.+++.|+|.+|+..++.-|+. ++++.++.
T Consensus 221 --~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~----lp~~~~rr 264 (287)
T COG4235 221 --ALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL----LPADDPRR 264 (287)
T ss_pred --hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc----CCCCCchH
Confidence 334556889999999999999999999999877765 55665443
No 137
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.34 E-value=0.0039 Score=65.88 Aligned_cols=135 Identities=17% Similarity=0.108 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCC
Q 011692 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQG 142 (479)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~ 142 (479)
..++...+.+|-..+..|||..|...+.++.+. .|.-...|...|+++...
T Consensus 81 ~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~--------~~~~~~~~llaA~aa~~~--------------------- 131 (409)
T TIGR00540 81 RRKAQKQTEEALLKLAEGDYAKAEKLIAKNADH--------AAEPVLNLIKAAEAAQQR--------------------- 131 (409)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHC---------------------
Confidence 346888899999999999999999999887775 455455666677777654
Q ss_pred CCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHH
Q 011692 143 SDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI 222 (479)
Q Consensus 143 ~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~I 222 (479)
++++.|.+.|..+...
T Consensus 132 ----------------------------------------------------------------g~~~~A~~~l~~a~~~ 147 (409)
T TIGR00540 132 ----------------------------------------------------------------GDEARANQHLEEAAEL 147 (409)
T ss_pred ----------------------------------------------------------------CCHHHHHHHHHHHHHh
Confidence 3455666666665422
Q ss_pred HHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 011692 223 AEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKA 302 (479)
Q Consensus 223 yek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekA 302 (479)
.++.. ..+...++.+++..++|++|+..+++.++.. |+|+ .+++-++.+|...+++++|+.++++.
T Consensus 148 ---~p~~~---l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-----P~~~---~~l~ll~~~~~~~~d~~~a~~~l~~l 213 (409)
T TIGR00540 148 ---AGNDN---ILVEIARTRILLAQNELHAARHGVDKLLEMA-----PRHK---EVLKLAEEAYIRSGAWQALDDIIDNM 213 (409)
T ss_pred ---CCcCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 22211 2234445888888888888888877766653 3443 56777888888888888888777776
Q ss_pred HH
Q 011692 303 IS 304 (479)
Q Consensus 303 L~ 304 (479)
++
T Consensus 214 ~k 215 (409)
T TIGR00540 214 AK 215 (409)
T ss_pred HH
Confidence 64
No 138
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.33 E-value=0.00094 Score=71.39 Aligned_cols=53 Identities=21% Similarity=0.311 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHH---HHHHHHHHHHHhhhhc
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECV---NAYYQYGRALLYKAQE 124 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A---~~y~~YG~ALl~~ar~ 124 (479)
..+..++++|..++.+|+|++|+.+|++|+++ .|..+ .+||++|++|..+++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--------~Pd~aeA~~A~yNLAcaya~LGr~ 128 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--------NPNPDEAQAAYYNKACCHAYREEG 128 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCchHHHHHHHHHHHHHHHcCCH
Confidence 44889999999999999999999999999999 56666 4599999999998654
No 139
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0056 Score=61.00 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 011692 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSH 99 (479)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~ 99 (479)
+.-...|-+.|+++|.+|+|.+|..+|.+|+-.+..+
T Consensus 175 mkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L 211 (329)
T KOG0545|consen 175 MKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNL 211 (329)
T ss_pred hhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHH
Confidence 3445678889999999999999999999999876543
No 140
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.30 E-value=0.0071 Score=55.20 Aligned_cols=123 Identities=20% Similarity=0.215 Sum_probs=87.9
Q ss_pred CCCCCCCccCCch-hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhcc
Q 011692 47 NCETSGAIADGER-EKTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEE 125 (479)
Q Consensus 47 ~~~~~~~~~~~~~-~~~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~e 125 (479)
...++-.-.|++. ..-++...+|--+|..+-.-|+.+.|++.|.+|+.+ .|+.+.+|++-+.+|.-.++.
T Consensus 23 ~~~aE~~lede~~~~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~- 93 (175)
T KOG4555|consen 23 LIPAESDLKDEEPDTQAIKASRELELKAIALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDD- 93 (175)
T ss_pred ccchhhhhcccCCchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCCh-
Confidence 3444433333333 345667778888999999999999999999999999 799999999999998654100
Q ss_pred CCcCCCCCCCcCCCCCCCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccC
Q 011692 126 ADPLVSVPKKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADED 205 (479)
Q Consensus 126 sdvLG~~~~~~~e~~~~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed 205 (479)
++.
T Consensus 94 -----------------------------------------------------------------------------e~A 96 (175)
T KOG4555|consen 94 -----------------------------------------------------------------------------EEA 96 (175)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 012
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 206 ESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 206 ~~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
.+||..|+ .+-. +...-..++|.--|.+|.-+|+-+.|..+|+.|-.+--
T Consensus 97 LdDLn~Al-------eLag---~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 97 LDDLNKAL-------ELAG---DQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHHHH-------HhcC---ccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 24555554 3321 11222457888999999999999999999999988743
No 141
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.28 E-value=0.00053 Score=47.78 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 011692 236 ILSALAEVALEREDIETSLSDYQKALTILERM 267 (479)
Q Consensus 236 v~~~LGev~le~g~yeeAl~dy~kAL~I~~~l 267 (479)
+|.+||.+|..+|+|++|+.+|+++|.|....
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~ 32 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDP 32 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 58899999999999999999999999988764
No 142
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.27 E-value=0.027 Score=58.61 Aligned_cols=138 Identities=15% Similarity=0.163 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCC
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~ 143 (479)
..+...+.+|+.+++.|+|..|+..|-.|++. .|.+-.+||.-|.+||..|+....+
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al--------------- 92 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAAL--------------- 92 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccch---------------
Confidence 45677889999999999999999999999997 8999999999999999885442211
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
.|| -|+|
T Consensus 93 ---------------------------------------------------------------~Dl---------~rVl- 99 (504)
T KOG0624|consen 93 ---------------------------------------------------------------QDL---------SRVL- 99 (504)
T ss_pred ---------------------------------------------------------------hhH---------HHHH-
Confidence 122 2222
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH------------HHHHHcCCC
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRI------------CLCLEIGSK 291 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~L------------G~ay~~~g~ 291 (479)
...|...-+..--|.|++.+|.+++|..+|...|.--.. .-..-+++-+| -..+.-.|+
T Consensus 100 ----elKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s-----~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 100 ----ELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPS-----NGLVLEAQSKLALIQEHWVLVQQLKSASGSGD 170 (504)
T ss_pred ----hcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCC-----cchhHHHHHHHHhHHHHHHHHHHHHHHhcCCc
Confidence 224566777778899999999999999999988764321 11112222222 233445678
Q ss_pred hhHHHHHHHHHHHHH
Q 011692 292 PQEAIPYCQKAISVC 306 (479)
Q Consensus 292 ~eeAi~~~ekAL~I~ 306 (479)
+..||++..+-|+|+
T Consensus 171 ~~~ai~~i~~llEi~ 185 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQ 185 (504)
T ss_pred hhhHHHHHHHHHhcC
Confidence 889999988888775
No 143
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.26 E-value=0.0044 Score=64.61 Aligned_cols=99 Identities=17% Similarity=0.178 Sum_probs=80.6
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC--ChhHHHHHHHHH
Q 011692 206 ESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPD--SRHIAELNFRIC 283 (479)
Q Consensus 206 ~~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d--~r~iAea~~~LG 283 (479)
.+-|+.+++.|+.|..+-....+ .+--.+++..||.++-...+|++|+-+..+|++|-..+--.+ .-.-+.++|.|+
T Consensus 135 ls~fq~~Lesfe~A~~~A~~~~D-~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhma 213 (518)
T KOG1941|consen 135 LSVFQKALESFEKALRYAHNNDD-AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMA 213 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhccCC-ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHH
Confidence 36789999999999888766543 333457999999999999999999999999999998764333 334578899999
Q ss_pred HHHHcCCChhHHHHHHHHHHHH
Q 011692 284 LCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 284 ~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.+|.++|+.-+|.++++.|..+
T Consensus 214 ValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 214 VALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred HHHHHhcccccHHHHHHHHHHH
Confidence 9999999998888888877654
No 144
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.22 E-value=0.0039 Score=60.47 Aligned_cols=79 Identities=25% Similarity=0.177 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHH
Q 011692 233 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQR 312 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~~ 312 (479)
.++.+-.=|.-++..|+|++|..-|..||.++..... ..-+.+|.|.|.|+..+++++.||.-|.+||++-......
T Consensus 94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~---e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kA 170 (271)
T KOG4234|consen 94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST---EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKA 170 (271)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH---HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHH
Confidence 3555566778888888888888888888888887754 2235678888888888888888888888888887644444
Q ss_pred HH
Q 011692 313 LL 314 (479)
Q Consensus 313 l~ 314 (479)
|.
T Consensus 171 l~ 172 (271)
T KOG4234|consen 171 LE 172 (271)
T ss_pred HH
Confidence 43
No 145
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.22 E-value=0.00058 Score=45.88 Aligned_cols=31 Identities=26% Similarity=0.221 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 276 AELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 276 Aea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
|++|+.||.+|..+|+|++|+.+|++++.+.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 6789999999999999999999999999874
No 146
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.21 E-value=0.001 Score=63.21 Aligned_cols=89 Identities=21% Similarity=0.240 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 011692 215 MLDVARAIAEKHWGDSMEKVDILSALAEVALEREDI----------ETSLSDYQKALTILERMVEPDSRHIAELNFRICL 284 (479)
Q Consensus 215 ~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~y----------eeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ 284 (479)
+|+.||..++......|.-++.+++-|.+++++.+| ++|+.-|++||.|... ..+++++||.
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~--------~hdAlw~lGn 77 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN--------KHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT---------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc--------hHHHHHHHHH
Confidence 456666666554333445688889999998888666 4456666666666433 3489999999
Q ss_pred HHHcCC----ChhHHHHHHHHHHHHHHHHHH
Q 011692 285 CLEIGS----KPQEAIPYCQKAISVCKSRVQ 311 (479)
Q Consensus 285 ay~~~g----~~eeAi~~~ekAL~I~k~rl~ 311 (479)
+|..++ +..+|-.+|++|...+++-.+
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~ 108 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKATEYFQKAVD 108 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHHHHh
Confidence 998765 456888888888888776654
No 147
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.18 E-value=0.00075 Score=45.71 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
|.+|.++|.++..+++|++|+.+|++||+|.+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 57899999999999999999999999999864
No 148
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.07 E-value=0.0037 Score=57.02 Aligned_cols=90 Identities=20% Similarity=0.203 Sum_probs=76.7
Q ss_pred CcChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 011692 205 DESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICL 284 (479)
Q Consensus 205 d~~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ 284 (479)
+.++|+.|+|.|..|+.+ -|+.+.+|++-+..+.-+++-++|+.++.+||++. |+..|.--.+|.+.|+
T Consensus 55 E~g~Ld~AlE~F~qal~l-------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCL-------APERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQTRTACQAFVQRGL 123 (175)
T ss_pred hccchHHHHHHHHHHHHh-------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----CccchHHHHHHHHHHH
Confidence 446777777777777655 35678999999999999999999999999999874 5567777789999999
Q ss_pred HHHcCCChhHHHHHHHHHHHH
Q 011692 285 CLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 285 ay~~~g~~eeAi~~~ekAL~I 305 (479)
.|..+|+-+.|..-|+.|-.+
T Consensus 124 lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHhCchHHHHHhHHHHHHh
Confidence 999999999999999988764
No 149
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.06 E-value=0.017 Score=60.35 Aligned_cols=154 Identities=19% Similarity=0.175 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCCC-hhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHY-GELA-LECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~-Ge~~-pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~ 143 (479)
...++.+|..+-..+||++|+-+..+|++|....- |+.| -.-+.++|.+..+|..+|
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G--------------------- 220 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLG--------------------- 220 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhc---------------------
Confidence 34566777777777888888888888888755543 4443 344566677777776552
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
.|..|.+..+.|..+-
T Consensus 221 ----------------------------------------------------------------~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 221 ----------------------------------------------------------------RLGDAMECCEEAMKLA 236 (518)
T ss_pred ----------------------------------------------------------------ccccHHHHHHHHHHHH
Confidence 2223556666666666
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhH-----HHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQE-----AIPY 298 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~ee-----Ai~~ 298 (479)
..+. +..-.+.|...+|+||.+.|+.+.|-.-|+.|..+...+- +--.-.+++...+.|+.-..-.++ |+++
T Consensus 237 l~~G-dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~g--drmgqv~al~g~Akc~~~~r~~~k~~~Crale~ 313 (518)
T KOG1941|consen 237 LQHG-DRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLG--DRMGQVEALDGAAKCLETLRLQNKICNCRALEF 313 (518)
T ss_pred HHhC-ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHHhhcccccchhHH
Confidence 5553 3556789999999999999999999999999999988763 111234555566666665554444 8888
Q ss_pred HHHHHHHHH
Q 011692 299 CQKAISVCK 307 (479)
Q Consensus 299 ~ekAL~I~k 307 (479)
-.++|+|-.
T Consensus 314 n~r~levA~ 322 (518)
T KOG1941|consen 314 NTRLLEVAS 322 (518)
T ss_pred HHHHHHHHH
Confidence 888888754
No 150
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.04 E-value=0.0011 Score=46.09 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 011692 278 LNFRICLCLEIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 278 a~~~LG~ay~~~g~~eeAi~~~ekAL~I~k 307 (479)
+|.+||.+|..+|+|++|+.+|+++|.+.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 588999999999999999999999997643
No 151
>PRK15331 chaperone protein SicA; Provisional
Probab=96.99 E-value=0.0025 Score=59.83 Aligned_cols=89 Identities=17% Similarity=0.088 Sum_probs=66.9
Q ss_pred hHHHHHHHH-----HHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 011692 208 DLDLAWKML-----DVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRI 282 (479)
Q Consensus 208 dle~Awe~L-----e~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~L 282 (479)
-|..|+..| +-|..+|.-..-..+.-.+-++.||.++..+++|++|+..|--|..+...- | ..+|.+
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d-----p---~p~f~a 111 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND-----Y---RPVFFT 111 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC-----C---CccchH
Confidence 344555443 445555543222223346678999999999999999999999998886533 2 348999
Q ss_pred HHHHHcCCChhHHHHHHHHHHH
Q 011692 283 CLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 283 G~ay~~~g~~eeAi~~~ekAL~ 304 (479)
|.||..+++...|+.+|+.++.
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 9999999999999999999987
No 152
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.96 E-value=0.012 Score=52.70 Aligned_cols=107 Identities=13% Similarity=0.046 Sum_probs=79.0
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCC----cc-hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc---CCCChhHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGD----SM-EKVDILSALAEVALEREDIETSLSDYQKALTILERMV---EPDSRHIAEL 278 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~----~~-~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~ll---g~d~r~iAea 278 (479)
+-|+.|-..+..|..+-...+.. +- --|-||-.|...+..+|+|++++..-.++|..+..-- ..+-..-..+
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaa 102 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAA 102 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHH
Confidence 56888888888888776655542 11 1378999999999999999999999999999987632 2223344567
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHH
Q 011692 279 NFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRL 313 (479)
Q Consensus 279 ~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~~l 313 (479)
-|+.+.++.-.|+.++|+..|+++.+++..|-+.+
T Consensus 103 Vfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE~ 137 (144)
T PF12968_consen 103 VFSRAVALEGLGRKEEALKEFRMAGEMIAERKGEM 137 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S--
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCC
Confidence 78999999999999999999999999988775543
No 153
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.95 E-value=0.0017 Score=43.54 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
|.+|..||.+++.+|+|++|+.+|+++|.|.+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 57899999999999999999999999999854
No 154
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.93 E-value=0.0015 Score=44.02 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 011692 276 AELNFRICLCLEIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 276 Aea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k 307 (479)
|.+|+.||.+|..+|++++|+.+|++++++.+
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 57899999999999999999999999998754
No 155
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.93 E-value=0.0016 Score=43.88 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
|.+|..||.++..+|+|++|+.+|++|++|.+
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 57899999999999999999999999999875
No 156
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.0085 Score=59.89 Aligned_cols=76 Identities=18% Similarity=0.174 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHH
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRL 313 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~~l 313 (479)
.++|.-|+++|+..++|.+|+=+|++++-|.+.. +--|.++|+++|-+|. ..++.-|.+||.+||.+...++..|
T Consensus 154 ~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n-~l~f~rlae~~Yt~gg----~eN~~~arkyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 154 QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFN-PLYFQRLAEVLYTQGG----AENLELARKYYERALKLNPKNLRAL 228 (289)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHhChHhHHHH
Confidence 5789999999999999999999999999886532 2236778888888887 4578889999999999998776665
Q ss_pred H
Q 011692 314 L 314 (479)
Q Consensus 314 ~ 314 (479)
-
T Consensus 229 ~ 229 (289)
T KOG3060|consen 229 F 229 (289)
T ss_pred H
Confidence 3
No 157
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.90 E-value=0.0055 Score=68.36 Aligned_cols=51 Identities=24% Similarity=0.404 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhh
Q 011692 64 EFADELMEKGTNA-----LKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKA 122 (479)
Q Consensus 64 ~~A~~L~~~G~~~-----~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a 122 (479)
+..+.-+.++.++ +..++|.++..+|+++++| .|---..||.||++.+++.
T Consensus 478 Elsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~--------nplq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 478 ELSNYISARAQRSLALLILSNKDFSEADKHLERSLEI--------NPLQLGTWFGLGCAALQLE 533 (777)
T ss_pred HHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhc--------CccchhHHHhccHHHHHHh
Confidence 3333334444444 4569999999999999998 6777789999999999874
No 158
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.90 E-value=0.013 Score=67.99 Aligned_cols=46 Identities=7% Similarity=-0.044 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 011692 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLY 120 (479)
Q Consensus 67 ~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~ 120 (479)
..|+.+|..|-.+|++++|...|.++|++ .|+++.++.+||-.|..
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEE 162 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHH
Confidence 47899999999999999999999999998 69999999999987754
No 159
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.89 E-value=0.018 Score=58.01 Aligned_cols=141 Identities=26% Similarity=0.237 Sum_probs=93.2
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCccccccccCC
Q 011692 76 ALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAVNG 155 (479)
Q Consensus 76 ~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de~~~~~~~~ 155 (479)
.+.+||++.|.-+|+++=.+....-.+...+++..+|++|+.++...
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~--------------------------------- 49 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKK--------------------------------- 49 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcC---------------------------------
Confidence 46899999999999999998764445567899999999999998751
Q ss_pred CCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH-h--cCC---
Q 011692 156 ESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK-H--WGD--- 229 (479)
Q Consensus 156 e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek-~--~~~--- 229 (479)
+++..|..+|++|..|+++ . ...
T Consensus 50 ---------------------------------------------------~~~~~a~~wL~~a~~~l~~~~~~~~~~~~ 78 (278)
T PF08631_consen 50 ---------------------------------------------------DKYEEAVKWLQRAYDILEKPGKMDKLSPD 78 (278)
T ss_pred ---------------------------------------------------CChHHHHHHHHHHHHHHHhhhhccccCCc
Confidence 1456677777777777755 1 111
Q ss_pred -cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 230 -SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 230 -~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
..-...++..|+.+|++.+.++.... -.++|++.+.-+| +++.+- +.+|-.+.. .++.+.+.+.+.+.+.-
T Consensus 79 ~~elr~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~~--~L~l~il~~-~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 79 GSELRLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEVF--LLKLEILLK-SFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHHH--HHHHHHHhc-cCChhHHHHHHHHHHHh
Confidence 12367899999999999999864333 3334444444443 343322 234433333 56666665555555543
No 160
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.012 Score=62.41 Aligned_cols=173 Identities=18% Similarity=0.129 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCC-cCCCCCCCcCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEAD-PLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esd-vLG~~~~~~~e~~~~~~ 144 (479)
..-|..+|+.++..|||.+|+..|++++-+ .|.+-...-.||..|-..++.+.. .|+...-.
T Consensus 232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~--------- 294 (564)
T KOG1174|consen 232 EHLMMALGKCLYYNGDYFQAEDIFSSTLCA--------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFA--------- 294 (564)
T ss_pred HHHHHHHhhhhhhhcCchHHHHHHHHHhhC--------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHh---------
Confidence 566788999999999999999999999998 899999999999998887765432 22210000
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
...-++ ..-++.... .=+.-+|..|+-+- +
T Consensus 295 ----------~~~~ta------------------~~wfV~~~~---------------l~~~K~~~rAL~~~-------e 324 (564)
T KOG1174|consen 295 ----------KVKYTA------------------SHWFVHAQL---------------LYDEKKFERALNFV-------E 324 (564)
T ss_pred ----------hhhcch------------------hhhhhhhhh---------------hhhhhhHHHHHHHH-------H
Confidence 000000 000000000 00113444444433 3
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
|.....++....|..-|...+..++.++|+..|+.|..++.--+ ++|-.|=-+|...+++.+|.-.-..++.
T Consensus 325 K~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL--------~~Y~GL~hsYLA~~~~kEA~~~An~~~~ 396 (564)
T KOG1174|consen 325 KCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRL--------EIYRGLFHSYLAQKRFKEANALANWTIR 396 (564)
T ss_pred HHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhH--------HHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 43333456677899999999999999999999999998875433 6777777788888888777777666666
Q ss_pred HHHHHHHHH
Q 011692 305 VCKSRVQRL 313 (479)
Q Consensus 305 I~k~rl~~l 313 (479)
.+......|
T Consensus 397 ~~~~sA~~L 405 (564)
T KOG1174|consen 397 LFQNSARSL 405 (564)
T ss_pred Hhhcchhhh
Confidence 665544443
No 161
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.80 E-value=0.003 Score=45.72 Aligned_cols=42 Identities=14% Similarity=0.134 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 011692 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGR 116 (479)
Q Consensus 67 ~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ 116 (479)
..++.+|..+..+|++++|+.+|++++++ +|+...+++.||+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 35788999999999999999999999998 8999999999986
No 162
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.76 E-value=0.021 Score=60.72 Aligned_cols=75 Identities=19% Similarity=0.206 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCC
Q 011692 211 LAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGS 290 (479)
Q Consensus 211 ~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g 290 (479)
.|..++..++ ...+.-+..+...+..++..++|+.|+...++|..+...-+ .+++.|+.||...|
T Consensus 218 ~AI~ll~~aL-------~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f--------~~W~~La~~Yi~~~ 282 (395)
T PF09295_consen 218 EAIRLLNEAL-------KENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEF--------ETWYQLAECYIQLG 282 (395)
T ss_pred HHHHHHHHHH-------HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhH--------HHHHHHHHHHHhcC
Confidence 4555555555 22334488999999999999999999999999999987766 89999999999999
Q ss_pred ChhHHHHHHH
Q 011692 291 KPQEAIPYCQ 300 (479)
Q Consensus 291 ~~eeAi~~~e 300 (479)
+|+.|+-...
T Consensus 283 d~e~ALlaLN 292 (395)
T PF09295_consen 283 DFENALLALN 292 (395)
T ss_pred CHHHHHHHHh
Confidence 9999986554
No 163
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.081 Score=58.21 Aligned_cols=81 Identities=17% Similarity=0.081 Sum_probs=65.3
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCC--------cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 011692 206 ESDLDLAWKMLDVARAIAEKHWGD--------SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAE 277 (479)
Q Consensus 206 ~~dle~Awe~Le~Ar~Iyek~~~~--------~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAe 277 (479)
.++|..|.+.|+.|+.|..+.+.. ..++.-|+.-|+-|++.+|+-.+|...|...+.. .+.|.+.+|.
T Consensus 188 ~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~----~~~D~~~~Av 263 (652)
T KOG2376|consen 188 NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR----NPADEPSLAV 263 (652)
T ss_pred cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh----cCCCchHHHH
Confidence 478999999999999998877642 2457889999999999999999999999877643 4568888888
Q ss_pred HHHHHHHHHHcCC
Q 011692 278 LNFRICLCLEIGS 290 (479)
Q Consensus 278 a~~~LG~ay~~~g 290 (479)
+-+||=.+-.+..
T Consensus 264 ~~NNLva~~~d~~ 276 (652)
T KOG2376|consen 264 AVNNLVALSKDQN 276 (652)
T ss_pred Hhcchhhhccccc
Confidence 8888865544443
No 164
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.71 E-value=0.034 Score=63.40 Aligned_cols=127 Identities=19% Similarity=0.172 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
...-|+..+..+...|+|.+|+.+|...+..- --.++.+|+..|+||..+
T Consensus 413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~-------~~~~~~vw~~~a~c~~~l----------------------- 462 (895)
T KOG2076|consen 413 DVDLYLDLADALTNIGKYKEALRLLSPITNRE-------GYQNAFVWYKLARCYMEL----------------------- 462 (895)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc-------cccchhhhHHHHHHHHHH-----------------------
Confidence 45667888888888999999999998887641 224578899999999876
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
+.++.|.+ .|+
T Consensus 463 --------------------------------------------------------------~e~e~A~e-------~y~ 473 (895)
T KOG2076|consen 463 --------------------------------------------------------------GEYEEAIE-------FYE 473 (895)
T ss_pred --------------------------------------------------------------hhHHHHHH-------HHH
Confidence 12344444 444
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC--------ChhHHHHHHHHHHHHHcCCChhHHH
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPD--------SRHIAELNFRICLCLEIGSKPQEAI 296 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d--------~r~iAea~~~LG~ay~~~g~~eeAi 296 (479)
+.+...|...++...|+.++..+|++++|++ +...++.++ ....+...++.+.+|...|+.++=+
T Consensus 474 kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalE-------tL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 474 KVLILAPDNLDARITLASLYQQLGNHEKALE-------TLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHhcCCCchhhhhhHHHHHHhcCCHHHHHH-------HHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4444456788999999999999999996554 444444444 3445677799999999999988733
Q ss_pred H
Q 011692 297 P 297 (479)
Q Consensus 297 ~ 297 (479)
.
T Consensus 547 ~ 547 (895)
T KOG2076|consen 547 N 547 (895)
T ss_pred H
Confidence 3
No 165
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.61 E-value=0.069 Score=46.27 Aligned_cols=172 Identities=24% Similarity=0.166 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCC--cCCCCCCCcCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEAD--PLVSVPKKEGDSQQGS 143 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esd--vLG~~~~~~~e~~~~~ 143 (479)
...+...+..+...+++..+...+..++.. ...+.....|+.+|..+...+..... .+......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 124 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALAL-------- 124 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC--------
Confidence 567778889999999999999999999986 33677888888888888876432111 00000000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCcc-ccc-cccCcChHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGEN-VAE-ADEDESDLDLAWKMLDVARA 221 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~-~~~-~~ed~~dle~Awe~Le~Ar~ 221 (479)
.. .... ... ... .....++++.|...+..+..
T Consensus 125 -------------~~----------------~~~~-----------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 158 (291)
T COG0457 125 -------------DP----------------DPDL-----------------AEALLALGALYELGDYEEALELYEKALE 158 (291)
T ss_pred -------------CC----------------Ccch-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 00 0000 000 000 01133566666666666622
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011692 222 IAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 301 (479)
Q Consensus 222 Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ek 301 (479)
.... .......+..++..+...+++..|+..|.+++.+.... ....++.++.+|...+++.+|+.++.+
T Consensus 159 -~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~ 227 (291)
T COG0457 159 -LDPE---LNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-------DAEALLNLGLLYLKLGKYEEALEYYEK 227 (291)
T ss_pred -cCCC---ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-------chHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 1100 13567788888888999999999999999999998764 358899999999999999999999999
Q ss_pred HHHHHHH
Q 011692 302 AISVCKS 308 (479)
Q Consensus 302 AL~I~k~ 308 (479)
++.....
T Consensus 228 ~~~~~~~ 234 (291)
T COG0457 228 ALELDPD 234 (291)
T ss_pred HHhhCcc
Confidence 9988764
No 166
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.45 E-value=0.035 Score=64.27 Aligned_cols=127 Identities=9% Similarity=-0.019 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
...+..+|..+..+|+|++|+++|.+++++ .|....+|+.++.++...
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~------------------------ 149 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADA------------------------ 149 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhc------------------------
Confidence 445666788999999999999999999998 788888886443333221
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
+..+.|++.++.+....
T Consensus 150 -------------------------------------------------------------~q~~eAl~~l~~l~~~d-- 166 (822)
T PRK14574 150 -------------------------------------------------------------GRGGVVLKQATELAERD-- 166 (822)
T ss_pred -------------------------------------------------------------CCHHHHHHHHHHhcccC--
Confidence 23445555554443321
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 301 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ek 301 (479)
+. ...+..++.++...+++.+|+..|++++++.... .+.++.+-.++...|-...|++..++
T Consensus 167 -----p~-~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n--------~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 167 -----PT-VQNYMTLSYLNRATDRNYDALQASSEAVRLAPTS--------EEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred -----cc-hHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 22 2334556666666888877999999999885432 36677777888888877777776664
No 167
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.44 E-value=0.032 Score=49.96 Aligned_cols=97 Identities=23% Similarity=0.177 Sum_probs=72.7
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCC---------------cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGD---------------SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPD 271 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~---------------~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d 271 (479)
++...+.+.|+.|+.+|.-..-. ......++..|+..+...|+|++|+..+++++.+..-
T Consensus 20 ~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~----- 94 (146)
T PF03704_consen 20 GDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPY----- 94 (146)
T ss_dssp T-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-----
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-----
Confidence 46677788888888888533110 1235688999999999999999999999999998532
Q ss_pred ChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHH
Q 011692 272 SRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQ 311 (479)
Q Consensus 272 ~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~ 311 (479)
--.+|..|-.+|..+|++.+|+.+|++....+...++
T Consensus 95 ---~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg 131 (146)
T PF03704_consen 95 ---DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELG 131 (146)
T ss_dssp ----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS
T ss_pred ---CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhC
Confidence 2478889999999999999999999998877666554
No 168
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.42 E-value=0.13 Score=44.64 Aligned_cols=95 Identities=23% Similarity=0.140 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHc
Q 011692 210 DLAWKMLDVARAIAEKHWGDSMEKVDILSALAE-VALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEI 288 (479)
Q Consensus 210 e~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGe-v~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~ 288 (479)
..++..+..+..++.+...........+..++. ++...++|+.|+..|.+++.+... ....+..++.++..+..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 179 (291)
T COG0457 105 LEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPE-----LNELAEALLALGALLEA 179 (291)
T ss_pred HHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----ccchHHHHHHhhhHHHH
Confidence 333334455555555554321121233444444 899999999999999999553221 23456777888888899
Q ss_pred CCChhHHHHHHHHHHHHHHHH
Q 011692 289 GSKPQEAIPYCQKAISVCKSR 309 (479)
Q Consensus 289 ~g~~eeAi~~~ekAL~I~k~r 309 (479)
.++++.|+.++.+++.+....
T Consensus 180 ~~~~~~a~~~~~~~~~~~~~~ 200 (291)
T COG0457 180 LGRYEEALELLEKALKLNPDD 200 (291)
T ss_pred hcCHHHHHHHHHHHHhhCccc
Confidence 999999999999999887773
No 169
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.41 E-value=0.46 Score=49.31 Aligned_cols=46 Identities=22% Similarity=0.230 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhh
Q 011692 70 MEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQ 123 (479)
Q Consensus 70 ~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar 123 (479)
.-.|--++-..+-++|+++|.+.++. .|+..++.+-+|+.+...|.
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~--------d~~t~e~~ltLGnLfRsRGE 84 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQE--------DPETFEAHLTLGNLFRSRGE 84 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhc--------CchhhHHHHHHHHHHHhcch
Confidence 34677788889999999999999985 89999999999998887653
No 170
>PRK15331 chaperone protein SicA; Provisional
Probab=96.39 E-value=0.046 Score=51.42 Aligned_cols=101 Identities=10% Similarity=0.051 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCC
Q 011692 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQ 141 (479)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~ 141 (479)
+-+....+...|..+|.+|+|++|..+|.-.|-+ .|-+.+.++.+|.++..+
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~-------------------- 84 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLK-------------------- 84 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHH--------------------
Confidence 3456778889999999999999999999988875 555666666666666554
Q ss_pred CCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHH
Q 011692 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARA 221 (479)
Q Consensus 142 ~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~ 221 (479)
..|+.|...|-+|..
T Consensus 85 -----------------------------------------------------------------k~y~~Ai~~Y~~A~~ 99 (165)
T PRK15331 85 -----------------------------------------------------------------KQFQKACDLYAVAFT 99 (165)
T ss_pred -----------------------------------------------------------------HHHHHHHHHHHHHHH
Confidence 367888888888876
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011692 222 IAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALT 262 (479)
Q Consensus 222 Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~ 262 (479)
+-...+ . .++.+|.+++.+++...|+..|+.++.
T Consensus 100 l~~~dp--~-----p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 100 LLKNDY--R-----PVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred cccCCC--C-----ccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 643222 2 377889999999999999999998877
No 171
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.34 E-value=0.024 Score=52.09 Aligned_cols=76 Identities=13% Similarity=0.100 Sum_probs=58.1
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++|..|.+.|+.-+ .+.+. .+..-++...||.+|...++|+.|+..|++-+++. |.|+.+.-++|.+|+++
T Consensus 24 ~~Y~~A~~~le~L~---~ryP~-g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-----P~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 24 GNYEEAIKQLEALD---TRYPF-GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-----PTHPNVDYAYYMRGLSY 94 (142)
T ss_pred CCHHHHHHHHHHHH---hcCCC-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCCCCccHHHHHHHHHH
Confidence 45555555444322 23332 23456789999999999999999999999988874 68999999999999999
Q ss_pred HcCCC
Q 011692 287 EIGSK 291 (479)
Q Consensus 287 ~~~g~ 291 (479)
..+..
T Consensus 95 ~~~~~ 99 (142)
T PF13512_consen 95 YEQDE 99 (142)
T ss_pred HHHhh
Confidence 98764
No 172
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.30 E-value=0.12 Score=56.91 Aligned_cols=65 Identities=22% Similarity=0.103 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 233 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
+..+|+.|+.+|...|+|++|+.+..+||.. .|.+.+.|+-.|.+|...|++.+|..+++.|-.+
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L 257 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHAGDLKEAAEAMDEAREL 257 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 4678999999999999999999999999987 4566799999999999999999999999988665
No 173
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.30 E-value=0.0063 Score=47.07 Aligned_cols=43 Identities=28% Similarity=0.343 Sum_probs=38.2
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccC
Q 011692 76 ALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEA 126 (479)
Q Consensus 76 ~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~es 126 (479)
++..|+|++|+.+|.+++.. +|...++++.||.+|+..++.+.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~ 43 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDE 43 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHH
T ss_pred ChhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHH
Confidence 46789999999999999998 89999999999999999977643
No 174
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.0088 Score=62.97 Aligned_cols=81 Identities=19% Similarity=0.249 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 232 EKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDS-------RHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 232 ~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~-------r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
..|...-.-|.+|+..|+|..|+..|++|+.++..-.+.+. -..--+|.||+.||..+++|.+|+.+|.++|.
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 35677778899999999999999999999999885544321 11235799999999999999999999999998
Q ss_pred HHHHHHHH
Q 011692 305 VCKSRVQR 312 (479)
Q Consensus 305 I~k~rl~~ 312 (479)
+-......
T Consensus 286 ~~~~N~KA 293 (397)
T KOG0543|consen 286 LDPNNVKA 293 (397)
T ss_pred cCCCchhH
Confidence 76544433
No 175
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.24 E-value=0.037 Score=46.70 Aligned_cols=68 Identities=13% Similarity=0.109 Sum_probs=58.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHH
Q 011692 242 EVALEREDIETSLSDYQKALTILERMVEPD-SRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSR 309 (479)
Q Consensus 242 ev~le~g~yeeAl~dy~kAL~I~~~llg~d-~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~r 309 (479)
-..+..++|..|++.+.+.+++........ ......++.+++.++...|++++|+..++.||.+.+..
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999998876544 23577789999999999999999999999999986654
No 176
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.10 E-value=0.11 Score=57.30 Aligned_cols=137 Identities=20% Similarity=0.124 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
...++-++..+...|+|++|.++..+|++. .|-+.+.|+.-|++|-+.
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~------------------------ 241 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHA------------------------ 241 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHC------------------------
Confidence 567777888888999999999999999997 799999999999999664
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
|++..|.++++.||.+
T Consensus 242 -------------------------------------------------------------G~~~~Aa~~~~~Ar~L--- 257 (517)
T PF12569_consen 242 -------------------------------------------------------------GDLKEAAEAMDEAREL--- 257 (517)
T ss_pred -------------------------------------------------------------CCHHHHHHHHHHHHhC---
Confidence 5788899999999864
Q ss_pred hcCCcchHHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc-CC-CC---hhHHHHHHHHHHHHHcCCChhHHHHH
Q 011692 226 HWGDSMEKVD--ILSALAEVALEREDIETSLSDYQKALTILERMV-EP-DS---RHIAELNFRICLCLEIGSKPQEAIPY 298 (479)
Q Consensus 226 ~~~~~~~~A~--v~~~LGev~le~g~yeeAl~dy~kAL~I~~~ll-g~-d~---r~iAea~~~LG~ay~~~g~~eeAi~~ 298 (479)
+.++ +-...+..+++.|++++|+..... +-+.- ++ .+ -+-..-....|.+|.+.|+|..|+..
T Consensus 258 ------D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~----Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~ 327 (517)
T PF12569_consen 258 ------DLADRYINSKCAKYLLRAGRIEEAEKTASL----FTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKR 327 (517)
T ss_pred ------ChhhHHHHHHHHHHHHHCCCHHHHHHHHHh----hcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 2232 334677888899999988765432 21111 11 11 11223335579999999999999999
Q ss_pred HHHHHHHHHH
Q 011692 299 CQKAISVCKS 308 (479)
Q Consensus 299 ~ekAL~I~k~ 308 (479)
|...+.++..
T Consensus 328 ~~~v~k~f~~ 337 (517)
T PF12569_consen 328 FHAVLKHFDD 337 (517)
T ss_pred HHHHHHHHHH
Confidence 9999988854
No 177
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.06 E-value=0.53 Score=47.25 Aligned_cols=94 Identities=22% Similarity=0.120 Sum_probs=68.0
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKV-DILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLC 285 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A-~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~a 285 (479)
..|..+..++++|..+|..+.. ++.| .++..-|. .+++-+-+.|+..|+++|.+.+.- ...+.--+.|-+++.+
T Consensus 85 ~klsEvvdl~eKAs~lY~E~Gs--pdtAAmaleKAak-~lenv~Pd~AlqlYqralavve~~--dr~~ma~el~gk~sr~ 159 (308)
T KOG1585|consen 85 SKLSEVVDLYEKASELYVECGS--PDTAAMALEKAAK-ALENVKPDDALQLYQRALAVVEED--DRDQMAFELYGKCSRV 159 (308)
T ss_pred HHhHHHHHHHHHHHHHHHHhCC--cchHHHHHHHHHH-HhhcCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHhhhH
Confidence 4566777888999999988753 3443 44444443 468888999999999999998753 1233345667778999
Q ss_pred HHcCCChhHHHHHHHHHHHH
Q 011692 286 LEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 286 y~~~g~~eeAi~~~ekAL~I 305 (479)
|-+..+|.+|...|.+-..+
T Consensus 160 lVrl~kf~Eaa~a~lKe~~~ 179 (308)
T KOG1585|consen 160 LVRLEKFTEAATAFLKEGVA 179 (308)
T ss_pred hhhhHHhhHHHHHHHHhhhH
Confidence 99999999998888775443
No 178
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.06 E-value=0.0096 Score=43.07 Aligned_cols=42 Identities=14% Similarity=0.003 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 011692 235 DILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICL 284 (479)
Q Consensus 235 ~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ 284 (479)
.++..||.+|..+|++++|+..|+++|++... + ..+++.||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-----~---~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-----D---PEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-----C---HHHHHHhhh
Confidence 47899999999999999999999999998543 3 366666664
No 179
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.03 E-value=0.019 Score=44.95 Aligned_cols=52 Identities=19% Similarity=0.274 Sum_probs=44.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
++++.|+++++.++.+ .|.....|..+|.++..+|+|.+|+.+|+++|++.+
T Consensus 9 ~~~~~A~~~~~~~l~~-------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 9 EDYEEALEVLERALEL-------DPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred CCHHHHHHHHHHHHHh-------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 6788888888888776 344677899999999999999999999999997654
No 180
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.022 Score=56.61 Aligned_cols=84 Identities=18% Similarity=0.099 Sum_probs=70.1
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHH
Q 011692 217 DVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAI 296 (479)
Q Consensus 217 e~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi 296 (479)
.-|...|.+.+--.|..+.-|.+-+..|+.+.+|+....+.++||++.. .++..||-||.++.....|++||
T Consensus 27 ~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~--------N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 27 DDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDP--------NLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred chHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh--------HHHHHHHHHHHHHHhhccccHHH
Confidence 3344455554444567788899999999999999999999999999854 45799999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 011692 297 PYCQKAISVCKS 308 (479)
Q Consensus 297 ~~~ekAL~I~k~ 308 (479)
.++++|..+.+.
T Consensus 99 ~~Lqra~sl~r~ 110 (284)
T KOG4642|consen 99 KVLQRAYSLLRE 110 (284)
T ss_pred HHHHHHHHHHhc
Confidence 999999877653
No 181
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=95.97 E-value=0.02 Score=64.06 Aligned_cols=85 Identities=19% Similarity=0.155 Sum_probs=70.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
.+|+.+...|+.+..|+ +-...+|+.+|-+.+..+++..|+.+|..|+.+.. +| ++++.||+.+|
T Consensus 499 ~~fs~~~~hle~sl~~n-------plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~P-----d~---~eaWnNls~ay 563 (777)
T KOG1128|consen 499 KDFSEADKHLERSLEIN-------PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEP-----DN---AEAWNNLSTAY 563 (777)
T ss_pred hhHHHHHHHHHHHhhcC-------ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCC-----Cc---hhhhhhhhHHH
Confidence 57777877777776654 34567999999999999999999999999998754 33 59999999999
Q ss_pred HcCCChhHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~ 306 (479)
...++..+|...++.|+..-
T Consensus 564 i~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 564 IRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHhhhHHHHHHHHHHhhcC
Confidence 99999888888888877654
No 182
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.27 Score=51.10 Aligned_cols=106 Identities=20% Similarity=0.184 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
.|..+-..|+-||+.++|-.|+++|++.|..- .+ +-.-++.+|++-+-|-++++
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k---c~-D~dlnavLY~NRAAa~~~l~---------------------- 133 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKK---CA-DPDLNAVLYTNRAAAQLYLG---------------------- 133 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc---CC-CccHHHHHHhhHHHHHHHHH----------------------
Confidence 68899999999999999999999999999863 22 23456788888888877762
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
+|-.|+.=..+||.
T Consensus 134 ---------------------------------------------------------------NyRs~l~Dcs~al~--- 147 (390)
T KOG0551|consen 134 ---------------------------------------------------------------NYRSALNDCSAALK--- 147 (390)
T ss_pred ---------------------------------------------------------------HHHHHHHHHHHHHh---
Confidence 33334333333433
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILER 266 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~ 266 (479)
..+..+.+|.+=+.+++++++|..|+...+..|.|..+
T Consensus 148 ----~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 148 ----LKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred ----cCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 24567889999999999999999999999988887654
No 183
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.88 E-value=0.44 Score=47.80 Aligned_cols=84 Identities=15% Similarity=0.117 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCc-------------chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 011692 208 DLDLAWKMLDVARAIAEKHWGDS-------------MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRH 274 (479)
Q Consensus 208 dle~Awe~Le~Ar~Iyek~~~~~-------------~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~ 274 (479)
|-..+.+.+.....+..+.++.. ..+|.-=+.+|..|++.+.|--|+.-++..++-. ++.+.
T Consensus 128 Dq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y-----~~t~~ 202 (254)
T COG4105 128 DQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENY-----PDTSA 202 (254)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcc-----ccccc
Confidence 34444444444555555555421 2345556788999999999999999999877653 35667
Q ss_pred HHHHHHHHHHHHHcCCChhHHH
Q 011692 275 IAELNFRICLCLEIGSKPQEAI 296 (479)
Q Consensus 275 iAea~~~LG~ay~~~g~~eeAi 296 (479)
+=++|..|..+|..+|-.++|-
T Consensus 203 ~~eaL~~l~eaY~~lgl~~~a~ 224 (254)
T COG4105 203 VREALARLEEAYYALGLTDEAK 224 (254)
T ss_pred hHHHHHHHHHHHHHhCChHHHH
Confidence 7799999999999999988874
No 184
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.87 E-value=0.1 Score=43.94 Aligned_cols=77 Identities=19% Similarity=0.077 Sum_probs=59.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDS--MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICL 284 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~--~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ 284 (479)
+||..|.+.|.............. .....+..++|.++...|++++|+..+++|++|.++.- |.+.++.++..|..
T Consensus 12 ~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~--D~~~l~~al~~~~~ 89 (94)
T PF12862_consen 12 GDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG--DRRCLAYALSWLAN 89 (94)
T ss_pred CCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHH
Confidence 688999888888877766654422 24567789999999999999999999999999999875 55556666655544
Q ss_pred H
Q 011692 285 C 285 (479)
Q Consensus 285 a 285 (479)
.
T Consensus 90 l 90 (94)
T PF12862_consen 90 L 90 (94)
T ss_pred H
Confidence 4
No 185
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.83 E-value=0.089 Score=51.90 Aligned_cols=53 Identities=25% Similarity=0.130 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhc
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQE 124 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~ 124 (479)
++|.-|+.+|..+-..|=+.-|.--|.++|.| .|.++++|+++|.-|+.-+..
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~f 115 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNF 115 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccc
Confidence 57899999999999999999999999999999 799999999999888876443
No 186
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.81 E-value=0.093 Score=52.19 Aligned_cols=97 Identities=18% Similarity=0.129 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHHHHHHhc-------------------CCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 011692 208 DLDLAWKMLDVARAIAEKHW-------------------GDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMV 268 (479)
Q Consensus 208 dle~Awe~Le~Ar~Iyek~~-------------------~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~ll 268 (479)
.++.|-++|..|..+|.-.- +..-+.+.+|.--+..|-. .+-.+|+.+++++++|.-..-
T Consensus 29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~G 107 (288)
T KOG1586|consen 29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMG 107 (288)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhh
Confidence 56666677766666663221 1122345555555554433 478888888888888887653
Q ss_pred CCCChhHHHHHHHHHHHHHcC-CChhHHHHHHHHHHHHHH
Q 011692 269 EPDSRHIAELNFRICLCLEIG-SKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 269 g~d~r~iAea~~~LG~ay~~~-g~~eeAi~~~ekAL~I~k 307 (479)
.-++-|.-|..||-.|+.. .++++||.||++|-+.++
T Consensus 108 --rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk 145 (288)
T KOG1586|consen 108 --RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYK 145 (288)
T ss_pred --HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHc
Confidence 2344566677788888765 788888888888776664
No 187
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.80 E-value=0.13 Score=55.56 Aligned_cols=128 Identities=13% Similarity=-0.002 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
.....+.+...|..|+|+.|...+...+.. +|.+...+-..|..+++.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~------------------------ 353 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEA------------------------ 353 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHc------------------------
Confidence 456788899999999999999999985443 788888888888888764
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
+....|.+.|+.++..+
T Consensus 354 -------------------------------------------------------------nk~~~A~e~~~kal~l~-- 370 (484)
T COG4783 354 -------------------------------------------------------------NKAKEAIERLKKALALD-- 370 (484)
T ss_pred -------------------------------------------------------------CChHHHHHHHHHHHhcC--
Confidence 23344666666666442
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 301 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ek 301 (479)
+...-...++|..++..|++.+|+..++..+.= .+.-+..|+.|+.+|..+|+..+|...+-.
T Consensus 371 -----P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~--------~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 371 -----PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN--------DPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred -----CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc--------CCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 233557789999999999999888777665432 222246677777777777776666555433
No 188
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.77 E-value=0.3 Score=55.21 Aligned_cols=78 Identities=9% Similarity=0.029 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHH
Q 011692 217 DVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAI 296 (479)
Q Consensus 217 e~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi 296 (479)
+.|+.+|.+.... -..+|+.|...|...|++++|+..|++.+.. -+.|+ ..+|..|-.+|...|.+++|.
T Consensus 377 ~~A~~vf~~m~~~---d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~---g~~Pd----~~T~~~ll~a~~~~g~~~~a~ 446 (697)
T PLN03081 377 EDARNVFDRMPRK---NLISWNALIAGYGNHGRGTKAVEMFERMIAE---GVAPN----HVTFLAVLSACRYSGLSEQGW 446 (697)
T ss_pred HHHHHHHHhCCCC---CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCC----HHHHHHHHHHHhcCCcHHHHH
Confidence 4444455444321 2357889999999999999999988885532 22233 245666667777777777777
Q ss_pred HHHHHHHH
Q 011692 297 PYCQKAIS 304 (479)
Q Consensus 297 ~~~ekAL~ 304 (479)
.+|+...+
T Consensus 447 ~~f~~m~~ 454 (697)
T PLN03081 447 EIFQSMSE 454 (697)
T ss_pred HHHHHHHH
Confidence 77766553
No 189
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.052 Score=55.25 Aligned_cols=77 Identities=12% Similarity=0.051 Sum_probs=60.5
Q ss_pred CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh------------------------------cCCCChhHHHH
Q 011692 229 DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERM------------------------------VEPDSRHIAEL 278 (479)
Q Consensus 229 ~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~l------------------------------lg~d~r~iAea 278 (479)
.+|.-++-|..||.+|+.+++|..|+.-|.+|++|.-.. +.-||-. ..+
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~-ira 229 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPAN-IRA 229 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCcc-HHH
Confidence 356678899999999999999999999999999875431 1112222 356
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 279 NFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 279 ~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
++-||+.+..+|+|.+|+..+++-|++.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 7889999999999999999998877553
No 190
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=95.71 E-value=0.12 Score=60.00 Aligned_cols=146 Identities=14% Similarity=0.062 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCc
Q 011692 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKD 146 (479)
Q Consensus 67 ~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~d 146 (479)
.....+|-.++.-+++..|+..|+-||++ .|.-..++.-+|.+|...||+..
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W~gLGeAY~~sGry~~-------------------- 614 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLWLGLGEAYPESGRYSH-------------------- 614 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHHHHHHHHHHHhcCceeh--------------------
Confidence 34455888899999999999999999998 89999999999999998765522
Q ss_pred cccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011692 147 DSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 226 (479)
Q Consensus 147 e~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~ 226 (479)
|..++.+|-.
T Consensus 615 -----------------------------------------------------------------AlKvF~kAs~----- 624 (1238)
T KOG1127|consen 615 -----------------------------------------------------------------ALKVFTKASL----- 624 (1238)
T ss_pred -----------------------------------------------------------------HHHhhhhhHh-----
Confidence 2333333322
Q ss_pred cCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 227 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 227 ~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
..|.-.-+.+..+.+.+.+|.|..|+.-|+.-+.-+.... +-.-.+|++|.+++..+...|=+.+|..+|+++|++|
T Consensus 625 --LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~-~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f 701 (1238)
T KOG1127|consen 625 --LRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLER-TGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESF 701 (1238)
T ss_pred --cCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 1233444566788888999999999999988776665433 2334589999999999999999999999999999999
Q ss_pred HHHHHHH
Q 011692 307 KSRVQRL 313 (479)
Q Consensus 307 k~rl~~l 313 (479)
.-.|.+.
T Consensus 702 ~~~l~h~ 708 (1238)
T KOG1127|consen 702 IVSLIHS 708 (1238)
T ss_pred HHHHHHh
Confidence 8887765
No 191
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.67 E-value=0.39 Score=54.96 Aligned_cols=56 Identities=21% Similarity=0.192 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011692 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (479)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (479)
+++|..|..+-++|--++++=+++..+++|++|.. ++-.-| .-..||+|+.-|-..
T Consensus 816 lEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE-~~DRiH--Lr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 816 LEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAE-TKDRIH--LRNTYYNYAKYLEAR 871 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHh-hcccee--hhhhHHHHHHHHHhh
Confidence 56788888888888888888889999999999853 333333 457899998877544
No 192
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=95.56 E-value=0.065 Score=59.44 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011692 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (479)
Q Consensus 67 ~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (479)
..|+.+.-++|..++|..........|.- +|+.++.+-..|-.|.-+
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k--------~~eHgeslAmkGL~L~~l 54 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKK--------FPEHGESLAMKGLTLNCL 54 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHh--------CCccchhHHhccchhhcc
Confidence 36888999999999999999988888873 566777787888777655
No 193
>PRK11906 transcriptional regulator; Provisional
Probab=95.55 E-value=0.19 Score=54.24 Aligned_cols=79 Identities=16% Similarity=0.227 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHc
Q 011692 209 LDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEI 288 (479)
Q Consensus 209 le~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~ 288 (479)
++.|...|++|+. ..|+.|.+|..+|.+..-.|+.++|+.++++||++ +-++++-...+|.+-...
T Consensus 354 ~~~a~~~f~rA~~-------L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL-------sP~~~~~~~~~~~~~~~~ 419 (458)
T PRK11906 354 AKVSHILFEQAKI-------HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL-------EPRRRKAVVIKECVDMYV 419 (458)
T ss_pred hhhHHHHHHHHhh-------cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-------CchhhHHHHHHHHHHHHc
Confidence 4445555666654 36789999999999999999999999999999988 445577888888884556
Q ss_pred CCChhHHHHHHHH
Q 011692 289 GSKPQEAIPYCQK 301 (479)
Q Consensus 289 ~g~~eeAi~~~ek 301 (479)
....++||..|-+
T Consensus 420 ~~~~~~~~~~~~~ 432 (458)
T PRK11906 420 PNPLKNNIKLYYK 432 (458)
T ss_pred CCchhhhHHHHhh
Confidence 6778899988854
No 194
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=95.50 E-value=0.14 Score=59.44 Aligned_cols=53 Identities=17% Similarity=0.128 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011692 61 KTVEFADELMEKGTNA-----LKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (479)
Q Consensus 61 ~~l~~A~~L~~~G~~~-----~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (479)
+.+..+.-++..+..+ +..++-..|..+|=+|+.+ .+.+|.+|-.+|..|...
T Consensus 448 k~mdva~~~~~e~~~~w~a~~~~rK~~~~al~ali~alrl--------d~~~apaf~~LG~iYrd~ 505 (1238)
T KOG1127|consen 448 KMMDVALLLECENSEFWVALGCMRKNSALALHALIRALRL--------DVSLAPAFAFLGQIYRDS 505 (1238)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--------ccchhHHHHHHHHHHHHH
Confidence 3444444444555444 3456788888888888888 688899999999888765
No 195
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.47 E-value=0.37 Score=57.48 Aligned_cols=86 Identities=20% Similarity=0.235 Sum_probs=59.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|+++|+..+.. +..+ -..+|+.|...|...|++++|+..|++.... -+.++ ..+|..|-.+|
T Consensus 663 G~~eeA~~l~~eM~k~-----G~~p-d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~---g~~Pd----vvtyN~LI~gy 729 (1060)
T PLN03218 663 GDLDKAFEILQDARKQ-----GIKL-GTVSYSSLMGACSNAKNWKKALELYEDIKSI---KLRPT----VSTMNALITAL 729 (1060)
T ss_pred CCHHHHHHHHHHHHHc-----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHH
Confidence 5566666665554321 1111 3568999999999999999999888875432 12222 36688899999
Q ss_pred HcCCChhHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I 305 (479)
...|++++|+.+|++....
T Consensus 730 ~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 730 CEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHc
Confidence 9999999999999876543
No 196
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.45 E-value=0.28 Score=53.02 Aligned_cols=41 Identities=24% Similarity=0.222 Sum_probs=23.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011692 73 GTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (479)
Q Consensus 73 G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (479)
|..++..+++.+|.+.|.+++.+ .|....+.++||.+|+..
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l--------~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALAL--------DPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhc--------CCCccHHHHHHHHHHHhc
Confidence 44455556666666666666555 354455555666666543
No 197
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.42 E-value=0.25 Score=55.80 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 301 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ek 301 (479)
+.+|..|-..+...|+++.|...+++.+.+. +++ ..+|..|..+|...|++++|.+.++.
T Consensus 494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-----p~~---~~~y~~L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 494 VNMWAALLTACRIHKNLELGRLAAEKLYGMG-----PEK---LNNYVVLLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-----CCC---CcchHHHHHHHHhCCCHHHHHHHHHH
Confidence 4467777777777777777777666654332 222 35678888888899998888877755
No 198
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.34 E-value=0.015 Score=36.14 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 277 ELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 277 ea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.+|+++|.+|...+++++|+.+|++++.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 57899999999999999999999999865
No 199
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.33 E-value=0.013 Score=40.57 Aligned_cols=30 Identities=23% Similarity=0.490 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhcc
Q 011692 88 CFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEE 125 (479)
Q Consensus 88 ~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~e 125 (479)
+|.+|+++ +|..+.+|++||.+|+..|+.+
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~ 30 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYE 30 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHH
Confidence 58899998 8999999999999999987653
No 200
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.32 E-value=0.0087 Score=41.37 Aligned_cols=33 Identities=24% Similarity=0.147 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHH
Q 011692 256 DYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAI 296 (479)
Q Consensus 256 dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi 296 (479)
.|++||++.. .-+.+|++||.+|...|++++|+
T Consensus 1 ~y~kAie~~P--------~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNP--------NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCC--------CCHHHHHHHHHHHHHCcCHHhhc
Confidence 3778888753 33699999999999999999986
No 201
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.12 Score=53.60 Aligned_cols=96 Identities=17% Similarity=0.160 Sum_probs=77.5
Q ss_pred cCcChHHHHHHHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 011692 204 EDESDLDLAWKMLDVARAIAEKHWG----DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELN 279 (479)
Q Consensus 204 ed~~dle~Awe~Le~Ar~Iyek~~~----~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~ 279 (479)
.++|+.--...-|..|+..|.+-+. +.--.|-+|+|-+-..+..|||..||.|..++|.+...+ +-+|
T Consensus 85 KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h--------~Ka~ 156 (390)
T KOG0551|consen 85 KEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH--------LKAY 156 (390)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch--------hhhh
Confidence 3445555555667888888866543 223358899999999999999999999999999987655 4899
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 011692 280 FRICLCLEIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 280 ~~LG~ay~~~g~~eeAi~~~ekAL~I~k 307 (479)
|+=+.|+..+.++++|+..|+..+.|..
T Consensus 157 ~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 157 IRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 9999999999999999999998887764
No 202
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.30 E-value=0.28 Score=47.93 Aligned_cols=109 Identities=13% Similarity=0.084 Sum_probs=73.9
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCccccccccCCC
Q 011692 77 LKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAVNGE 156 (479)
Q Consensus 77 ~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de~~~~~~~~e 156 (479)
-....+++|++.|.-|+-. ..+.++.+-..|.++..++..+..++..
T Consensus 88 ~~~Rt~~~ai~~YkLAll~-~~~~~~~~s~~A~l~LrlAWlyR~~~~~-------------------------------- 134 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLC-AQIKKEKPSKKAGLCLRLAWLYRDLGDE-------------------------------- 134 (214)
T ss_pred CCCCCHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHhhccCCH--------------------------------
Confidence 3456899999999999877 5566777778888888886666443100
Q ss_pred CCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcCCcchHHHH
Q 011692 157 SSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVDI 236 (479)
Q Consensus 157 ~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v 236 (479)
+.+..-+..|.+.|+.|..--. .+...+.-+.+
T Consensus 135 ----------------------------------------------~~E~~fl~~Al~~y~~a~~~e~-~~~~~~~~~~l 167 (214)
T PF09986_consen 135 ----------------------------------------------ENEKRFLRKALEFYEEAYENED-FPIEGMDEATL 167 (214)
T ss_pred ----------------------------------------------HHHHHHHHHHHHHHHHHHHhCc-CCCCCchHHHH
Confidence 0112344555555554432211 11224566889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 237 LSALAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 237 ~~~LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
...||+++.+.|+|++|+..|.+.+....
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 99999999999999999999998876644
No 203
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=95.30 E-value=0.13 Score=57.49 Aligned_cols=85 Identities=18% Similarity=0.153 Sum_probs=71.0
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
+.|+.|..+|..||.+ .....+|+.-+.+...++++++|+..+++||+++..+. ..|..||.+|
T Consensus 632 ~e~eraR~llakar~~--------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~--------Kl~lmlGQi~ 695 (913)
T KOG0495|consen 632 DELERARDLLAKARSI--------SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFH--------KLWLMLGQIE 695 (913)
T ss_pred ccHHHHHHHHHHHhcc--------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchH--------HHHHHHhHHH
Confidence 4567777777777652 23577899999999999999999999999999876654 7899999999
Q ss_pred HcCCChhHHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~k 307 (479)
+.+++.+.|...|-+.+..|.
T Consensus 696 e~~~~ie~aR~aY~~G~k~cP 716 (913)
T KOG0495|consen 696 EQMENIEMAREAYLQGTKKCP 716 (913)
T ss_pred HHHHHHHHHHHHHHhccccCC
Confidence 999999999999998877664
No 204
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.18 E-value=0.2 Score=50.40 Aligned_cols=88 Identities=18% Similarity=0.123 Sum_probs=69.6
Q ss_pred cChHHHHHHHHHHHHHHHH-HhcCCcchHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHh--cCCCC----hhHHH
Q 011692 206 ESDLDLAWKMLDVARAIAE-KHWGDSMEKVDILSALAEVALERE-DIETSLSDYQKALTILERM--VEPDS----RHIAE 277 (479)
Q Consensus 206 ~~dle~Awe~Le~Ar~Iye-k~~~~~~~~A~v~~~LGev~le~g-~yeeAl~dy~kAL~I~~~l--lg~d~----r~iAe 277 (479)
.+|++.|..|+.++..+.. ..+.....++++++++|.-.+..+ +|+.|+..+++|++|.... ....+ ..-..
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~ 85 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLS 85 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHH
Confidence 3789999999999998884 223234678999999999999999 9999999999999997652 11222 34567
Q ss_pred HHHHHHHHHHcCCChh
Q 011692 278 LNFRICLCLEIGSKPQ 293 (479)
Q Consensus 278 a~~~LG~ay~~~g~~e 293 (479)
++..|+.+|...+.++
T Consensus 86 iL~~La~~~l~~~~~~ 101 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYE 101 (278)
T ss_pred HHHHHHHHHHcCCChH
Confidence 7888999998888774
No 205
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.17 E-value=0.39 Score=52.29 Aligned_cols=61 Identities=10% Similarity=-0.015 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHH
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQ 300 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~e 300 (479)
..+...||.+..++|+.++||..|+..++.... ...-.+|++|-.||..+++|.++...+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~------~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN------LDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc------cchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 556678999999999999999999987765431 1234689999999999998876655443
No 206
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.17 E-value=0.024 Score=35.19 Aligned_cols=30 Identities=30% Similarity=0.402 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 011692 235 DILSALAEVALEREDIETSLSDYQKALTIL 264 (479)
Q Consensus 235 ~v~~~LGev~le~g~yeeAl~dy~kAL~I~ 264 (479)
.+|..+|.++..+++|++|+..|++++++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 578999999999999999999999999764
No 207
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.11 E-value=0.57 Score=47.04 Aligned_cols=94 Identities=13% Similarity=0.082 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 011692 208 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 287 (479)
Q Consensus 208 dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~ 287 (479)
+-+.|+.+|.++..+++...-. ....+-|..++.++....+|++|-..|.+-..+..+.-.-.++ -..+..+=++|.
T Consensus 125 ~Pd~AlqlYqralavve~~dr~-~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~--~k~~va~ilv~L 201 (308)
T KOG1585|consen 125 KPDDALQLYQRALAVVEEDDRD-QMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQ--CKAYVAAILVYL 201 (308)
T ss_pred CHHHHHHHHHHHHHHHhccchH-HHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccH--HHHHHHHHHHHh
Confidence 4456888888888888765322 2345778899999999999999999998877777665322222 222334445666
Q ss_pred cCCChhHHHHHHHHHHH
Q 011692 288 IGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 288 ~~g~~eeAi~~~ekAL~ 304 (479)
...+|..|..+|+..-.
T Consensus 202 ~~~Dyv~aekc~r~~~q 218 (308)
T KOG1585|consen 202 YAHDYVQAEKCYRDCSQ 218 (308)
T ss_pred hHHHHHHHHHHhcchhc
Confidence 77789899888877443
No 208
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.06 E-value=0.6 Score=55.70 Aligned_cols=167 Identities=10% Similarity=0.066 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCC--cCCCCCCCcCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEAD--PLVSVPKKEGDSQQGS 143 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esd--vLG~~~~~~~e~~~~~ 143 (479)
...+..+...+...|++++|..+|.+..+. | ..|+ ..+|..+-.+|...++.+.. +|....+.
T Consensus 614 ~~tynsLI~ay~k~G~~deAl~lf~eM~~~-----G-v~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-------- 678 (1060)
T PLN03218 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKK-----G-VKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ-------- 678 (1060)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--------
Confidence 356777788899999999999999987653 2 2344 45677777777766443221 11100000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
+. .++.. .-+ ..-..--..++++.|+++|+..+..
T Consensus 679 --------G~---------~pd~~---tyn------------------------sLI~ay~k~G~~eeA~~lf~eM~~~- 713 (1060)
T PLN03218 679 --------GI---------KLGTV---SYS------------------------SLMGACSNAKNWKKALELYEDIKSI- 713 (1060)
T ss_pred --------CC---------CCCHH---HHH------------------------HHHHHHHhCCCHHHHHHHHHHHHHc-
Confidence 00 00000 000 0000001125566666665543321
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
+..+. ..+|+.|-..|+..|++++|+..|++.... -+.|+ ..+|..|-.+|...|++++|...|.+.+
T Consensus 714 ----g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~---Gi~Pd----~~Ty~sLL~a~~k~G~le~A~~l~~~M~ 781 (1060)
T PLN03218 714 ----KLRPT-VSTMNALITALCEGNQLPKALEVLSEMKRL---GLCPN----TITYSILLVASERKDDADVGLDLLSQAK 781 (1060)
T ss_pred ----CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 11222 467999999999999999999999976432 22233 3577788889999999999999998876
Q ss_pred H
Q 011692 304 S 304 (479)
Q Consensus 304 ~ 304 (479)
+
T Consensus 782 k 782 (1060)
T PLN03218 782 E 782 (1060)
T ss_pred H
Confidence 5
No 209
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.03 E-value=1.5 Score=38.99 Aligned_cols=68 Identities=16% Similarity=0.128 Sum_probs=46.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPD-SRHIAELNFR 281 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d-~r~iAea~~~ 281 (479)
++++.|...+..+..+ .|.--.+|..|-.++...|++..|+..|+++..++.+-+|-. ++.+-..|-.
T Consensus 76 ~~~~~a~~~~~~~l~~-------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~~ 144 (146)
T PF03704_consen 76 GDYEEALRLLQRALAL-------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALYRE 144 (146)
T ss_dssp T-HHHHHHHHHHHHHH-------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHH
Confidence 5666776665555543 234456899999999999999999999999999999877744 5555555443
No 210
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.03 E-value=0.023 Score=37.56 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 277 ELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 277 ea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
+++|++|.||...|++++|+.+|++.+.-
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 57899999999999999999999998764
No 211
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.46 Score=48.64 Aligned_cols=131 Identities=24% Similarity=0.301 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccC--CcCCCCCCCcCCCCCCCC
Q 011692 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEA--DPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 67 ~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~es--dvLG~~~~~~~e~~~~~~ 144 (479)
...+..|.-.+..++|.+|...|..++.. .|+.+++.+.|+.+|+..++.+. .+|...|...
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~--------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-------- 198 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQA--------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-------- 198 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHh--------CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc--------
Confidence 34566788899999999999999999998 78899999999999999865422 2332222100
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHH--
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI-- 222 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~I-- 222 (479)
. ++..-.+....++++.|..+
T Consensus 199 ------------------------------~---------------------------~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 199 ------------------------------Q---------------------------DKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred ------------------------------h---------------------------hhHHHHHHHHHHHHHHHhcCCC
Confidence 0 00001133334555555322
Q ss_pred ---HHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 011692 223 ---AEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSR 273 (479)
Q Consensus 223 ---yek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r 273 (479)
+++.....+.-.+.-+.|+.++.-.|+++.|++++ |.|.++..+..+.
T Consensus 222 ~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~L---l~~l~~d~~~~d~ 272 (304)
T COG3118 222 IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHL---LALLRRDRGFEDG 272 (304)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH---HHHHHhcccccCc
Confidence 22222334556788899999999999999998877 4555555554443
No 212
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=94.84 E-value=0.27 Score=52.41 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=33.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKA 260 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kA 260 (479)
++++.|.+++..|.. ..|.--.+|..|+.+|...|+|+.|+-.+..|
T Consensus 248 ~~~~lAL~iAk~av~-------lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 248 KKYELALEIAKKAVE-------LSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CCHHHHHHHHHHHHH-------hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 344555555444443 34667889999999999999999999665543
No 213
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=94.83 E-value=0.18 Score=56.95 Aligned_cols=103 Identities=21% Similarity=0.145 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..+...|..+...|++.+|-++|-.|+.+ +|+-..+...+|.+|++.|+.
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--------dP~hv~s~~Ala~~lle~G~~--------------------- 734 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALAL--------DPDHVPSMTALAELLLELGSP--------------------- 734 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHhCCc---------------------
Confidence 667788999999999999999999999998 888889999999999987411
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
.+..+.-||.-|+.+
T Consensus 735 --------------------------------------------------------------~la~~~~~L~dalr~--- 749 (799)
T KOG4162|consen 735 --------------------------------------------------------------RLAEKRSLLSDALRL--- 749 (799)
T ss_pred --------------------------------------------------------------chHHHHHHHHHHHhh---
Confidence 111222244444332
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILER 266 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~ 266 (479)
.+..-++|..||.|...+|++++|..+|+.|+.+-+.
T Consensus 750 ----dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 750 ----DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred ----CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 3455679999999999999999999999999988553
No 214
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.41 E-value=1.2 Score=44.95 Aligned_cols=51 Identities=18% Similarity=0.006 Sum_probs=41.4
Q ss_pred chHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcC
Q 011692 231 MEKVDILSALAEVALER------EDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIG 289 (479)
Q Consensus 231 ~~~A~v~~~LGev~le~------g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~ 289 (479)
...+.+|..+|.-.... +++++++..|++|+.+..... .+||.+|..+...
T Consensus 249 ~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 249 ELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE--------KAWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH--------HHHHHHHHHHHHH
Confidence 34689999999999998 999999999999999977664 5677777666543
No 215
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.38 E-value=0.058 Score=38.59 Aligned_cols=35 Identities=14% Similarity=0.038 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH
Q 011692 276 AELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRV 310 (479)
Q Consensus 276 Aea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl 310 (479)
|++|..||-+-....+|++|+.-|++||+|++..+
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~ 35 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALEIQEELL 35 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999987654
No 216
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.29 E-value=0.81 Score=42.15 Aligned_cols=51 Identities=24% Similarity=0.291 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (479)
+..|...|...+..|+|.+|++.|+....-. =+|+.++ .+.+++|-+++..
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry--P~g~ya~---qAqL~l~yayy~~ 60 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY--PFGEYAE---QAQLDLAYAYYKQ 60 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCCcccH---HHHHHHHHHHHHc
Confidence 6689999999999999999998887655431 1344444 5888888888864
No 217
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.15 E-value=0.033 Score=60.17 Aligned_cols=78 Identities=17% Similarity=0.114 Sum_probs=61.6
Q ss_pred chHHHH--HHHHHHHHHhcCCHHHHHHHHHHHHH-HHHHhc----CCC-----ChhHHHHHHHHHHHHHcCCChhHHHHH
Q 011692 231 MEKVDI--LSALAEVALEREDIETSLSDYQKALT-ILERMV----EPD-----SRHIAELNFRICLCLEIGSKPQEAIPY 298 (479)
Q Consensus 231 ~~~A~v--~~~LGev~le~g~yeeAl~dy~kAL~-I~~~ll----g~d-----~r~iAea~~~LG~ay~~~g~~eeAi~~ 298 (479)
+++..| +++||-|++.++.|.-++.+|.+||+ ...++- |.. .-.--+++||.|+.|...|++-.|..+
T Consensus 278 ~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqC 357 (696)
T KOG2471|consen 278 PQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQC 357 (696)
T ss_pred chhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHH
Confidence 444444 57999999999999999999999995 444432 111 112247899999999999999999999
Q ss_pred HHHHHHHHHH
Q 011692 299 CQKAISVCKS 308 (479)
Q Consensus 299 ~ekAL~I~k~ 308 (479)
|++|..+|.+
T Consensus 358 f~~av~vfh~ 367 (696)
T KOG2471|consen 358 FQKAVHVFHR 367 (696)
T ss_pred HHHHHHHHhc
Confidence 9999998854
No 218
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.15 E-value=0.36 Score=45.65 Aligned_cols=88 Identities=18% Similarity=0.156 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChh
Q 011692 214 KMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQ 293 (479)
Q Consensus 214 e~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~e 293 (479)
+-|+.-+.-|+..+. ...+-.+|..||+.|+..|+++.|+..|.++.... . ...++.+.++++-.+..+.+++.
T Consensus 17 ~~Le~elk~~~~n~~-kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~---~--~~~~~id~~l~~irv~i~~~d~~ 90 (177)
T PF10602_consen 17 EKLEAELKDAKSNLG-KESIRMALEDLADHYCKIGDLEEALKAYSRARDYC---T--SPGHKIDMCLNVIRVAIFFGDWS 90 (177)
T ss_pred HHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc---C--CHHHHHHHHHHHHHHHHHhCCHH
Confidence 445555555655544 45678999999999999999999999999866542 2 33456788888888888999999
Q ss_pred HHHHHHHHHHHHHH
Q 011692 294 EAIPYCQKAISVCK 307 (479)
Q Consensus 294 eAi~~~ekAL~I~k 307 (479)
....+..+|-.++.
T Consensus 91 ~v~~~i~ka~~~~~ 104 (177)
T PF10602_consen 91 HVEKYIEKAESLIE 104 (177)
T ss_pred HHHHHHHHHHHHHh
Confidence 98888888776543
No 219
>PLN03077 Protein ECB2; Provisional
Probab=94.03 E-value=1.5 Score=50.74 Aligned_cols=87 Identities=6% Similarity=-0.001 Sum_probs=53.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHH------------H------------
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKAL------------T------------ 262 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL------------~------------ 262 (479)
+.++.||++|+..+..|.- .|. ...|..|.+++.+.|++++|...+++.- .
T Consensus 603 g~v~ea~~~f~~M~~~~gi----~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e 677 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSI----TPN-LKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGE 677 (857)
T ss_pred ChHHHHHHHHHHHHHHhCC----CCc-hHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Confidence 5677788877766544422 222 4688999999999999999988887630 0
Q ss_pred -HHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHH
Q 011692 263 -ILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYC 299 (479)
Q Consensus 263 -I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ 299 (479)
..++++. -.|.-+..|..|+.+|...|++++|....
T Consensus 678 ~~a~~l~~-l~p~~~~~y~ll~n~ya~~g~~~~a~~vr 714 (857)
T PLN03077 678 LAAQHIFE-LDPNSVGYYILLCNLYADAGKWDEVARVR 714 (857)
T ss_pred HHHHHHHh-hCCCCcchHHHHHHHHHHCCChHHHHHHH
Confidence 0001110 01112345667788888888877765544
No 220
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=94.02 E-value=0.049 Score=58.59 Aligned_cols=101 Identities=18% Similarity=0.181 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
.|.++-.+++.++..++|+.|+++|++|+++ +|-||..|-+-..+++.+
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~----------------------- 51 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKV----------------------- 51 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheee-----------------------
Confidence 4677888999999999999999999999998 899998877755444432
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
++|.-|..=+..|.
T Consensus 52 --------------------------------------------------------------e~~~~Al~Da~kai---- 65 (476)
T KOG0376|consen 52 --------------------------------------------------------------ESFGGALHDALKAI---- 65 (476)
T ss_pred --------------------------------------------------------------chhhhHHHHHHhhh----
Confidence 12222222112222
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
...+..+.+|..-|...+.+++|.+|+.+|++...+..
T Consensus 66 ---e~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~P 103 (476)
T KOG0376|consen 66 ---ELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAP 103 (476)
T ss_pred ---hcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCc
Confidence 12367889999999999999999999999998877754
No 221
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=93.88 E-value=0.49 Score=56.70 Aligned_cols=86 Identities=10% Similarity=0.026 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCCh
Q 011692 213 WKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKP 292 (479)
Q Consensus 213 we~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~ 292 (479)
.++|++|.++... -.+|..|..||...++|++|.+.|+.-++=+.+.. .+|..+|..+..+.+-
T Consensus 1517 ~kVFeRAcqycd~--------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~--------~vW~~y~~fLl~~ne~ 1580 (1710)
T KOG1070|consen 1517 KKVFERACQYCDA--------YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTR--------KVWIMYADFLLRQNEA 1580 (1710)
T ss_pred HHHHHHHHHhcch--------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchh--------hHHHHHHHHHhcccHH
Confidence 3566777765532 34899999999999999999999998877666433 7888889999999999
Q ss_pred hHHHHHHHHHHHHHHH--HHHHHH
Q 011692 293 QEAIPYCQKAISVCKS--RVQRLL 314 (479)
Q Consensus 293 eeAi~~~ekAL~I~k~--rl~~l~ 314 (479)
+.|...+++||..+.+ +++-+.
T Consensus 1581 ~aa~~lL~rAL~~lPk~eHv~~Is 1604 (1710)
T KOG1070|consen 1581 EAARELLKRALKSLPKQEHVEFIS 1604 (1710)
T ss_pred HHHHHHHHHHHhhcchhhhHHHHH
Confidence 9999999999999887 555443
No 222
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.88 E-value=4.9 Score=36.44 Aligned_cols=117 Identities=15% Similarity=0.071 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhH----HHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCC
Q 011692 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALEC----VNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (479)
Q Consensus 68 ~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~----A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~ 143 (479)
-.+..|.+.+..|-|++|+.-|.+|.++...+--+.+-+. |-+|-.+..+|..+
T Consensus 11 ~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~L---------------------- 68 (144)
T PF12968_consen 11 MALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGL---------------------- 68 (144)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHT----------------------
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhh----------------------
Confidence 3345568889999999999999999999877654432222 22233333333333
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
+.|+.++..-++|+.-|
T Consensus 69 ---------------------------------------------------------------gry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 69 ---------------------------------------------------------------GRYDECLQSADRALRYF 85 (144)
T ss_dssp ---------------------------------------------------------------T-HHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------------ccHHHHHHHHHHHHHHH
Confidence 56778888889999999
Q ss_pred HHhcCCcc----hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 011692 224 EKHWGDSM----EKVDILSALAEVALEREDIETSLSDYQKALTILERMVE 269 (479)
Q Consensus 224 ek~~~~~~----~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg 269 (479)
.|....+. .-+.+-++-|.....+|+.++|+..|+.+-++..+--|
T Consensus 86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG 135 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG 135 (144)
T ss_dssp HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence 88865432 23556677889999999999999999999998876544
No 223
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=93.82 E-value=0.66 Score=48.64 Aligned_cols=82 Identities=13% Similarity=0.157 Sum_probs=50.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
+|++.|.+++..-+.| .+=-|..|..-+.+|...|....||.+++.+-++-... .+.||.++..|
T Consensus 169 GD~~~ai~~i~~llEi-------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn--------Te~~ykis~L~ 233 (504)
T KOG0624|consen 169 GDCQNAIEMITHLLEI-------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDN--------TEGHYKISQLL 233 (504)
T ss_pred CchhhHHHHHHHHHhc-------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc--------hHHHHHHHHHH
Confidence 4555565555443332 22346677788889999999999999999887775432 25555555555
Q ss_pred HcCCChhHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL 303 (479)
...|+...++...+.+|
T Consensus 234 Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 234 YTVGDAENSLKEIRECL 250 (504)
T ss_pred HhhhhHHHHHHHHHHHH
Confidence 55555555544444443
No 224
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=93.79 E-value=6.8 Score=40.43 Aligned_cols=39 Identities=26% Similarity=0.123 Sum_probs=32.8
Q ss_pred ChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH
Q 011692 272 SRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRV 310 (479)
Q Consensus 272 ~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl 310 (479)
+...|.+||.+|..+...+++.+|+.+++.|+..++...
T Consensus 247 ~~~~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~~~~ 285 (345)
T cd09034 247 CIFKALAYYYHGLKLDEANKIGEAIARLQAALELLKESE 285 (345)
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Confidence 335789999999999999999999999999998655543
No 225
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.76 E-value=1.4 Score=47.91 Aligned_cols=91 Identities=15% Similarity=0.080 Sum_probs=61.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|.+.|+.|...-.... + -..-|+..||.+++-+.+|++|..+|.+.++. +.-.-|.-+|-.|.||
T Consensus 281 g~~~~Ai~~~~~a~~~q~~~~--Q-l~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-------s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 281 GNLEEAIESFERAIESQSEWK--Q-LHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-------SKWSKAFYAYLAAACL 350 (468)
T ss_pred cCHHHHHHHHHHhccchhhHH--h-HHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHH
Confidence 456677777776652211111 1 12458999999999999999999999877763 2334477789999999
Q ss_pred HcCCChhHHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~k 307 (479)
...++.+.+..+-++|..+++
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~ 371 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFR 371 (468)
T ss_pred HhhccchhhhhhHHHHHHHHH
Confidence 999999444444444444444
No 226
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=93.61 E-value=0.32 Score=51.35 Aligned_cols=66 Identities=21% Similarity=0.180 Sum_probs=59.0
Q ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 231 MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 231 ~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
++-...|..||.+++..+.|.+|-.+|+.||+.+.. +..|.-||.+|..+|+..+|-.+++.+|-+
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s---------~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS---------ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC---------hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 444689999999999999999999999999998765 478888999999999999999999999843
No 227
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.48 E-value=0.18 Score=52.60 Aligned_cols=82 Identities=12% Similarity=0.000 Sum_probs=65.6
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHH
Q 011692 217 DVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAI 296 (479)
Q Consensus 217 e~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi 296 (479)
+.|..+|.+.....+..+-.|.+-+..|+.+.+|..|..+...|+.+-+.+ ..+|.+.|.+-..+|+..+|.
T Consensus 114 ~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y--------~KAYSRR~~AR~~Lg~~~EAK 185 (536)
T KOG4648|consen 114 EEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY--------VKAYSRRMQARESLGNNMEAK 185 (536)
T ss_pred hHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH--------HHHHHHHHHHHHHHhhHHHHH
Confidence 444555555544344556678889999999999999999999999997655 488899999999999999999
Q ss_pred HHHHHHHHHH
Q 011692 297 PYCQKAISVC 306 (479)
Q Consensus 297 ~~~ekAL~I~ 306 (479)
+-|+.+|++-
T Consensus 186 kD~E~vL~LE 195 (536)
T KOG4648|consen 186 KDCETVLALE 195 (536)
T ss_pred HhHHHHHhhC
Confidence 9999998764
No 228
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.48 E-value=0.11 Score=51.26 Aligned_cols=84 Identities=10% Similarity=0.048 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHc
Q 011692 209 LDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEI 288 (479)
Q Consensus 209 le~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~ 288 (479)
+-...-+..+||-=|...+.-.|..+++++-||.-+..-|+|+.|.+.|...+++.... --+|.|.|+++.+
T Consensus 74 lYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y--------~Ya~lNRgi~~YY 145 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY--------NYAHLNRGIALYY 145 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc--------hHHHhccceeeee
Confidence 33334445667777776666678899999999999999999999999999999886544 3789999999999
Q ss_pred CCChhHHHHHHH
Q 011692 289 GSKPQEAIPYCQ 300 (479)
Q Consensus 289 ~g~~eeAi~~~e 300 (479)
.|+|.-|..-|.
T Consensus 146 ~gR~~LAq~d~~ 157 (297)
T COG4785 146 GGRYKLAQDDLL 157 (297)
T ss_pred cCchHhhHHHHH
Confidence 999988766553
No 229
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=93.48 E-value=0.59 Score=38.27 Aligned_cols=61 Identities=20% Similarity=0.087 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHHHHhhh
Q 011692 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSH-YGELALECVNAYYQYGRALLYKA 122 (479)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~-~Ge~~pe~A~~y~~YG~ALl~~a 122 (479)
++..|..|+.+|...-..|+|++|..+|.++|+.+... ..+.+|..-..+..--.-++..+
T Consensus 2 ~l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~eyl~RA 63 (75)
T cd02684 2 SLEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQYVSRA 63 (75)
T ss_pred cHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999988774 47888888777665555555443
No 230
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=93.36 E-value=0.1 Score=55.70 Aligned_cols=73 Identities=10% Similarity=-0.020 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHH
Q 011692 237 LSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSR 309 (479)
Q Consensus 237 ~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~r 309 (479)
+.-|-.|++-+|+|..|+..++--=--++.++..--.--..+||.+|.||.+++||.+|+..|...|-.+.+.
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677888888888887654321111123332233345789999999999999999999999988665443
No 231
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.34 E-value=6.7 Score=39.53 Aligned_cols=50 Identities=22% Similarity=0.296 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLY 120 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~ 120 (479)
+..|.+.|...+..|+|.+|+..|..... .-.+|+.. -.+.+.++-|++.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~--~~p~s~~~---~qa~l~l~yA~Yk 83 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDS--RHPFSPYS---EQAQLDLAYAYYK 83 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCccc---HHHHHHHHHHHHh
Confidence 78999999999999999999999998773 23345554 3466677777765
No 232
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=93.24 E-value=0.76 Score=36.45 Aligned_cols=60 Identities=28% Similarity=0.274 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC-CCChhHHHHHHHHHHHHHhhh
Q 011692 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYG-ELALECVNAYYQYGRALLYKA 122 (479)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~G-e~~pe~A~~y~~YG~ALl~~a 122 (479)
+..|..++.+|..+-..|+|.+|+++|.+|++.+..... +..|..-..+...-.-++..+
T Consensus 2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~~~yl~RA 62 (69)
T PF04212_consen 2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQALRQKMKEYLERA 62 (69)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 356889999999999999999999999999999887765 456777777666666665544
No 233
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=93.08 E-value=0.79 Score=37.24 Aligned_cols=60 Identities=22% Similarity=0.178 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHhhh
Q 011692 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHY-GELALECVNAYYQYGRALLYKA 122 (479)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~-Ge~~pe~A~~y~~YG~ALl~~a 122 (479)
+..|..|+.+|...-..|+|.+|+.+|.+|++.+.... .+..|.....+..--.-++..+
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl~Ra 63 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEYLDRA 63 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999888765 5667777777666555555543
No 234
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=92.99 E-value=0.34 Score=54.00 Aligned_cols=83 Identities=17% Similarity=0.031 Sum_probs=66.0
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHH
Q 011692 218 VARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIP 297 (479)
Q Consensus 218 ~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~ 297 (479)
.+..|..++ ++..+++...|....-+|+-++|...-+.+|.+..+. -.+++-+|+++....+|++||.
T Consensus 29 ~~~~iL~k~----~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S--------~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 29 LIKQILKKF----PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS--------HVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHHhC----CccchhHHhccchhhcccchHHHHHHHHHHhccCccc--------chhHHHHHHHHhhhhhHHHHHH
Confidence 344454443 4567889999999999999999999999888854332 2789999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 011692 298 YCQKAISVCKSRVQR 312 (479)
Q Consensus 298 ~~ekAL~I~k~rl~~ 312 (479)
+|+.||.+-+..++-
T Consensus 97 cy~nAl~~~~dN~qi 111 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQI 111 (700)
T ss_pred HHHHHHhcCCCcHHH
Confidence 999999875544443
No 235
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.96 E-value=0.29 Score=53.23 Aligned_cols=87 Identities=13% Similarity=0.136 Sum_probs=68.2
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
.++..|.++|+..+..| |+-+--++..|.++.-.|+.++|+..|++|+..+.+.-. .-..++|.||.+|
T Consensus 247 ~~~~~a~~lL~~~~~~y-------P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Q----l~~l~~~El~w~~ 315 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRY-------PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQ----LHHLCYFELAWCH 315 (468)
T ss_pred CCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHh----HHHHHHHHHHHHH
Confidence 56777777777666554 233456788999999999999999999999965544321 1247799999999
Q ss_pred HcCCChhHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~ 304 (479)
..+.+|++|..+|.+-++
T Consensus 316 ~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 316 MFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHchHHHHHHHHHHHHh
Confidence 999999999999988665
No 236
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.94 E-value=0.15 Score=33.46 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 011692 235 DILSALAEVALEREDIETSLSDYQKALTIL 264 (479)
Q Consensus 235 ~v~~~LGev~le~g~yeeAl~dy~kAL~I~ 264 (479)
+++..+|.++...|++++|+..|++.+.-.
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 478999999999999999999999988754
No 237
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.92 E-value=0.69 Score=43.76 Aligned_cols=91 Identities=21% Similarity=0.141 Sum_probs=70.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
||++.|.+.|..+|.-. ...-..++.++++-.|.+..++|.....+..++-.+... +.+.-.-.....--|+.+
T Consensus 50 Gd~~~A~k~y~~~~~~~----~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~--~~d~~~~nrlk~~~gL~~ 123 (177)
T PF10602_consen 50 GDLEEALKAYSRARDYC----TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK--GGDWERRNRLKVYEGLAN 123 (177)
T ss_pred hhHHHHHHHHHHHhhhc----CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHH
Confidence 78888888888766521 123457899999999999999999999999999999987 333333445555667788
Q ss_pred HcCCChhHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL 303 (479)
...++|..|...|-.++
T Consensus 124 l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 124 LAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHhchHHHHHHHHHccC
Confidence 88899999998885544
No 238
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=92.75 E-value=6.1 Score=41.32 Aligned_cols=37 Identities=30% Similarity=0.254 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHH
Q 011692 273 RHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSR 309 (479)
Q Consensus 273 r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~r 309 (479)
..-|.+||..|..+...++|.+||.+++.|...++..
T Consensus 241 ~f~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~a 277 (348)
T cd09242 241 YYKSLAAYYHALALEAAGKYGEAIAYLTQAESILKEA 277 (348)
T ss_pred HHHHHHHHHHHHHhHHhccHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999999999999999999866554
No 239
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=92.32 E-value=4.9 Score=42.14 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHH
Q 011692 274 HIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSR 309 (479)
Q Consensus 274 ~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~r 309 (479)
..|.+||..|..+...++|.++|.+++.|+..++.-
T Consensus 235 f~A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~~l~~a 270 (355)
T cd09241 235 FKAAAHYRMALVALEKSKYGEEVARLRVALAACKEA 270 (355)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999999999999999865443
No 240
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=92.26 E-value=1 Score=37.12 Aligned_cols=59 Identities=15% Similarity=0.207 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHHHHhhh
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSH-YGELALECVNAYYQYGRALLYKA 122 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~-~Ge~~pe~A~~y~~YG~ALl~~a 122 (479)
..|..|+.+|..+-..|+|.+|+.+|.+|++.+... .++.++..-..|...=.-|+..+
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RA 63 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRA 63 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999988874 47888888888777666666554
No 241
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=92.22 E-value=1.2 Score=36.75 Aligned_cols=47 Identities=17% Similarity=0.161 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--hhCCCChhHHHHH
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVS--HYGELALECVNAY 111 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~--~~Ge~~pe~A~~y 111 (479)
.|..|..++..+-..|+|++|+.+|..|++.+.. +|+...|..-..+
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~i 53 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTI 53 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 4788999999999999999999999999999988 6776666665554
No 242
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=92.21 E-value=4.8 Score=39.28 Aligned_cols=63 Identities=13% Similarity=0.076 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 232 EKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 232 ~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
+..+.+..+|.++.-+|+|.+|...|+.++....-. -+.+|| +.-+..+|+..+|-..|..-.
T Consensus 158 r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-------~ar~~Y--~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 158 RSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP-------QARIYY--AEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-------HHHHHH--HHHHHHhcchhHHHHHHHHHH
Confidence 456788999999999999999999999998876432 144444 566677888877766554433
No 243
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=92.18 E-value=6 Score=41.38 Aligned_cols=35 Identities=23% Similarity=0.195 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH
Q 011692 274 HIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 308 (479)
Q Consensus 274 ~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~ 308 (479)
..|.+||..|+.+...++|.+||.+++.|+..++.
T Consensus 253 f~a~A~y~~a~~~~e~~k~GeaIa~L~~A~~~~~~ 287 (346)
T cd09240 253 FHALAEYHQSLVAKAQKKFGEEIARLQHALELIKT 287 (346)
T ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Confidence 34899999999999999999999999999875443
No 244
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=91.93 E-value=1.4 Score=49.47 Aligned_cols=81 Identities=15% Similarity=0.121 Sum_probs=55.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++.+.|..+|+.|+.+|- ..-..|+.||.|+-.+++.+.|...|..-++.+... .-.+..|+..-
T Consensus 665 d~~eeA~rllEe~lk~fp-------~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~--------ipLWllLakle 729 (913)
T KOG0495|consen 665 DNVEEALRLLEEALKSFP-------DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS--------IPLWLLLAKLE 729 (913)
T ss_pred hhHHHHHHHHHHHHHhCC-------chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC--------chHHHHHHHHH
Confidence 566677777777776663 345689999999999999999999998877665432 23455555555
Q ss_pred HcCCChhHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKA 302 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekA 302 (479)
+..+..-.|...+.++
T Consensus 730 Ek~~~~~rAR~ildra 745 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRA 745 (913)
T ss_pred HHhcchhhHHHHHHHH
Confidence 6666555555555544
No 245
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=91.77 E-value=0.93 Score=46.25 Aligned_cols=87 Identities=23% Similarity=0.175 Sum_probs=57.9
Q ss_pred ChHHHHHHHH-------HHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 011692 207 SDLDLAWKML-------DVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELN 279 (479)
Q Consensus 207 ~dle~Awe~L-------e~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~ 279 (479)
-.+..||=.| ..|.-||+...........+++.++.+++.+|+|++|...+++||... +.-.+++
T Consensus 167 ~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~--------~~~~d~L 238 (290)
T PF04733_consen 167 TQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD--------PNDPDTL 238 (290)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------CCHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--------cCCHHHH
Confidence 4566677433 455667766544333456788899999999999999999988887432 2235789
Q ss_pred HHHHHHHHcCCChhHHH-HHHHH
Q 011692 280 FRICLCLEIGSKPQEAI-PYCQK 301 (479)
Q Consensus 280 ~~LG~ay~~~g~~eeAi-~~~ek 301 (479)
.|+..|...+|+..++. +++++
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHH
Confidence 99999999999885444 44444
No 246
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=91.73 E-value=0.64 Score=51.29 Aligned_cols=92 Identities=16% Similarity=0.116 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHHHcCCChh
Q 011692 216 LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETS-LSDYQKALTILERMVE-PDSRHIAELNFRICLCLEIGSKPQ 293 (479)
Q Consensus 216 Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeA-l~dy~kAL~I~~~llg-~d~r~iAea~~~LG~ay~~~g~~e 293 (479)
+..|+.+|++.....|..+.+|-.|+.+|.-...|... -..+.++.....+... +..+..+.+|.-+|+.+...|+++
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~ 437 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD 437 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence 34666677776665677888888888877665444310 0122233332222111 112223578999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 011692 294 EAIPYCQKAISVCK 307 (479)
Q Consensus 294 eAi~~~ekAL~I~k 307 (479)
+|..+|++|+.+..
T Consensus 438 ~A~~~l~rAl~L~p 451 (517)
T PRK10153 438 EAYQAINKAIDLEM 451 (517)
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999998754
No 247
>PLN03077 Protein ECB2; Provisional
Probab=91.67 E-value=4.8 Score=46.67 Aligned_cols=63 Identities=10% Similarity=0.067 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
..+|+.|...|...|++++|+..|++.++ .-+.|+. .+|..|=.+|...|++++|+.+|+...
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~---~g~~Pd~----~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVE---SGVNPDE----VTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCCc----ccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 45788888888888888888888887543 2233443 345555567777888888888887665
No 248
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.59 E-value=1.5 Score=45.27 Aligned_cols=31 Identities=19% Similarity=0.112 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 275 IAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 275 iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.|.+..++|..+...|+|+.|+.-|+.|+.+
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqv 173 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQV 173 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhh
Confidence 4788999999999999999999999998875
No 249
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=91.57 E-value=2.9 Score=41.49 Aligned_cols=91 Identities=14% Similarity=0.067 Sum_probs=72.9
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 011692 206 ESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLC 285 (479)
Q Consensus 206 ~~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~a 285 (479)
.+.-....+.|..|+..|.+... .--...+...||.-|+..|+|++|+.+|+.++...++- .=...+..++..|-.|
T Consensus 151 ~~hs~~iI~lL~~A~~~f~~~~~-~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~C 227 (247)
T PF11817_consen 151 VDHSKLIIELLEKAYEQFKKYGQ-NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLEC 227 (247)
T ss_pred cchHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHH
Confidence 45667888999999999988753 22346678899999999999999999999997666531 1256688999999999
Q ss_pred HHcCCChhHHHHHH
Q 011692 286 LEIGSKPQEAIPYC 299 (479)
Q Consensus 286 y~~~g~~eeAi~~~ 299 (479)
+...++.+..+.+.
T Consensus 228 a~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 228 AKRLGDVEDYLTTS 241 (247)
T ss_pred HHHhCCHHHHHHHH
Confidence 99999988776654
No 250
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=91.48 E-value=1.6 Score=39.49 Aligned_cols=69 Identities=20% Similarity=0.181 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC-----ChhH--HHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 236 ILSALAEVALEREDIETSLSDYQKALTILERMVEPD-----SRHI--AELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 236 v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d-----~r~i--Aea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
-|.+||+..+..+++=.++-+|++||.+-+++-..+ .+.+ .-+.+||+.-|+.+|+.+=.++|++-|-+
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE 78 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASE 78 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHH
Confidence 478999999999999999999999999999984222 2222 23468999999999999999999987764
No 251
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=91.37 E-value=1.8 Score=34.92 Aligned_cols=60 Identities=27% Similarity=0.247 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHhhh
Q 011692 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHY-GELALECVNAYYQYGRALLYKA 122 (479)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~-Ge~~pe~A~~y~~YG~ALl~~a 122 (479)
+..|..|+.+|..+-..|+|++|+.+|.+|++.+.... -+..|..-..+..--+-|+..+
T Consensus 5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl~ra 65 (77)
T smart00745 5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLEGIKVESDSKRREAVKAKAAEYLDRA 65 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999887754 3456677777766666666554
No 252
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=91.27 E-value=0.74 Score=45.63 Aligned_cols=73 Identities=27% Similarity=0.346 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHH
Q 011692 233 KVDILSALAEVALERED---IETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL-EIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~---yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay-~~~g~~eeAi~~~ekAL~I 305 (479)
.++.|.-|+++.....+ -++|...|++|+.+....+++.||.--....|.+.-| +..++.++|+...++|+.-
T Consensus 122 kgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 122 KGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred hccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 47777788888755333 3789999999999999999999988555555655554 7799999998888887653
No 253
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=91.20 E-value=1.9 Score=34.67 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHhhh
Q 011692 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHY-GELALECVNAYYQYGRALLYKA 122 (479)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~-Ge~~pe~A~~y~~YG~ALl~~a 122 (479)
+..|..|+.+|..+-..|+|++|+.+|.+|++.+.... .+..|..-..|...-.-|+..+
T Consensus 3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~~k~~~yl~Ra 63 (75)
T cd02656 3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKEPKLRKLLRKKVKEYLDRA 63 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999887755 4556777677766666666554
No 254
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.00 E-value=2.8 Score=44.33 Aligned_cols=51 Identities=22% Similarity=0.267 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHH
Q 011692 237 LSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEA 295 (479)
Q Consensus 237 ~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeA 295 (479)
...|+.|+..+-.|.+||..|++.|. ++|..--...++++||..+.-|+-+
T Consensus 154 qLSLAsvhYmR~HYQeAIdvYkrvL~--------dn~ey~alNVy~ALCyyKlDYydvs 204 (557)
T KOG3785|consen 154 QLSLASVHYMRMHYQEAIDVYKRVLQ--------DNPEYIALNVYMALCYYKLDYYDVS 204 (557)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHh--------cChhhhhhHHHHHHHHHhcchhhhH
Confidence 34455555555555555555554443 4555556677889999988876544
No 255
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=90.73 E-value=1.8 Score=43.26 Aligned_cols=74 Identities=24% Similarity=0.244 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-HHcCCChhHHHHHHHHHHHHH
Q 011692 233 KVDILSALAEVALERED---IETSLSDYQKALTILERMVEPDSRHIAELNFRICLC-LEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~---yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~a-y~~~g~~eeAi~~~ekAL~I~ 306 (479)
.++.|.-|+++....++ -++|...|++|+.|....++|.||.---...|.++. |+.+++.++|+..-++|+.-.
T Consensus 124 KGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 124 KGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 47888888888655444 469999999999999988999998744444454444 456889999887777766543
No 256
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.71 E-value=6.4 Score=42.60 Aligned_cols=35 Identities=11% Similarity=0.076 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILERMV 268 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~ll 268 (479)
-..|...|.+.+.+|+-++|.++|+.|...+.++-
T Consensus 267 lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elk 301 (568)
T KOG2561|consen 267 LRLELLQGVVAYHQGQRDEAYEALESAHAKLLELK 301 (568)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHee
Confidence 47788999999999999999999999999888764
No 257
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.43 E-value=0.9 Score=34.83 Aligned_cols=30 Identities=10% Similarity=0.187 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 277 ELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 277 ea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
+.+|.|++++.++|+|++|..+++..|++-
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 578999999999999999999999999875
No 258
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=90.39 E-value=0.15 Score=54.91 Aligned_cols=85 Identities=16% Similarity=0.050 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHH
Q 011692 216 LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEA 295 (479)
Q Consensus 216 Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeA 295 (479)
|+.|...|.+.....+.-|..|.+-+..++..++|..|+.|+.+|+++- |..+.+||+-|.++..+++|.+|
T Consensus 20 fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--------P~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 20 FDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--------PTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred HHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--------chhhheeeeccHHHHhHHHHHHH
Confidence 3445555555555566677788888899999999999999999999885 55679999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 011692 296 IPYCQKAISVCKS 308 (479)
Q Consensus 296 i~~~ekAL~I~k~ 308 (479)
+.-|++...+...
T Consensus 92 ~~~l~~~~~l~Pn 104 (476)
T KOG0376|consen 92 LLDLEKVKKLAPN 104 (476)
T ss_pred HHHHHHhhhcCcC
Confidence 9999887766543
No 259
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=90.35 E-value=2.9 Score=34.42 Aligned_cols=37 Identities=24% Similarity=0.180 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHH
Q 011692 275 IAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQ 311 (479)
Q Consensus 275 iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~ 311 (479)
.|..|...+.-+...|+|.+||.+|+.||+++...+.
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~ 41 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVK 41 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4777888899999999999999999999998766654
No 260
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.96 E-value=5.4 Score=44.32 Aligned_cols=80 Identities=23% Similarity=0.283 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 011692 208 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALERE---DIETSLSDYQKALTILERMVEPDSRHIAELNFRICL 284 (479)
Q Consensus 208 dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g---~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ 284 (479)
|+..|..+|.+|-. ....++.+.||.++.... ++.+|..+|..|..- .| ..++|+||.
T Consensus 308 d~~~A~~~~~~aA~---------~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-------G~---~~A~~~la~ 368 (552)
T KOG1550|consen 308 DYEKALKLYTKAAE---------LGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-------GH---ILAIYRLAL 368 (552)
T ss_pred cHHHHHHHHHHHHh---------cCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-------CC---hHHHHHHHH
Confidence 45555555544432 245678889999998877 567787777777543 22 488999999
Q ss_pred HHHcC----CChhHHHHHHHHHHHHH
Q 011692 285 CLEIG----SKPQEAIPYCQKAISVC 306 (479)
Q Consensus 285 ay~~~----g~~eeAi~~~ekAL~I~ 306 (479)
||... .+...|..+|.+|.+.-
T Consensus 369 ~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 369 CYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 99865 36789999999988765
No 261
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.96 E-value=1 Score=48.12 Aligned_cols=144 Identities=19% Similarity=0.210 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccccccccccccccccchhhhHHHHH
Q 011692 276 AELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAE 355 (479)
Q Consensus 276 Aea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~E 355 (479)
|.+..++|+||..++++++|+.+|+++|.++..-|-- . .+..+...+ ..-.+...=
T Consensus 22 A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~GIpv-----------------g-----~k~k~~~~~--~~W~dAcal 77 (560)
T KOG2709|consen 22 AYASVEQGLCYDEVNDWENALAMYEKGLNLIVEGIPV-----------------G-----EKMKNARKS--EMWKDACAL 77 (560)
T ss_pred HHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHhcCcc-----------------c-----ccccccccc--hhhHHHHHH
Confidence 5677899999999999999999999999876542110 0 000000000 112355677
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhc----CChhHHHHHHHhhhhccCCCCCCcccccccccccccCCCCCCCCCCCcccccc
Q 011692 356 IETLSGLCGDLEKKLEDLQQVAL----FPKSILSEILGMASAKAKGDEKSSTSAVLSSSRMGTANSDGDFDSPTVSTAHT 431 (479)
Q Consensus 356 ieelk~ll~dl~~KieDlk~~~~----~p~s~~~e~~~~~~~~~~g~~~~~~~~~~~~s~~~~~~~s~gf~sp~~~~~~~ 431 (479)
|.-||+-+..++.||+=|+.... +|..-..+.++.+-.+ .+|.-+...|.|-...|+|. +|.. -+
T Consensus 78 iQklkes~~~vr~Rl~vL~kqkqsid~~~~q~tpk~~~E~~~k-----rpPllaenPstqyg~~N~sg---APkt---Yr 146 (560)
T KOG2709|consen 78 IQKLKESKSSVRHRLNVLKKQKQSIDEGPKQPTPKKIKEAEEK-----RPPLLAENPSTQYGVENESG---APKT---YR 146 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCccccCchhhhccCcc-----cCcccccCcchhhccccccC---CCcc---cc
Confidence 88999999999999999987422 1111111122211111 34544555555655556662 2322 22
Q ss_pred CCCCC------ceecccccccccccccCC
Q 011692 432 SGAAG------VTHLGVVGRGVKRVSMST 454 (479)
Q Consensus 432 ~~~~~------v~~lgvvg~g~kr~~~~~ 454 (479)
.-+++ |.+.-|||.-.=|.-++|
T Consensus 147 elAAglrellavrdakvlldE~~R~q~~~ 175 (560)
T KOG2709|consen 147 ELAAGLRELLAVRDAKVLLDEAIRMQLDS 175 (560)
T ss_pred hhhhhhhhhhccchhHHHHHHHHHhhccC
Confidence 34444 445556666666776664
No 262
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=89.76 E-value=17 Score=40.80 Aligned_cols=97 Identities=22% Similarity=0.169 Sum_probs=68.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
.++++|..+|++++.+..++ +.....-.+...|+.++...+... |+...++++...+. ++..+...+--+.++.+++
T Consensus 74 ~n~~~Ae~~L~k~~~l~~~~-~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~-~~~~~w~~~frll~~~l~~ 150 (608)
T PF10345_consen 74 ENLDLAETYLEKAILLCERH-RLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET-YGHSAWYYAFRLLKIQLAL 150 (608)
T ss_pred CCHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHHH
Confidence 46888999999998888772 222224667888999999999888 99999999999887 3333333333333333443
Q ss_pred HcCCChhHHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~k 307 (479)
.. +++..|+..++....+-.
T Consensus 151 ~~-~d~~~Al~~L~~~~~~a~ 170 (608)
T PF10345_consen 151 QH-KDYNAALENLQSIAQLAN 170 (608)
T ss_pred hc-ccHHHHHHHHHHHHHHhh
Confidence 33 688889998888777654
No 263
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=89.50 E-value=3.5 Score=49.91 Aligned_cols=179 Identities=17% Similarity=0.190 Sum_probs=103.6
Q ss_pred ccCCCCCCCCccCCchhhhHHHHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 011692 44 CNNNCETSGAIADGEREKTVEFADELME-------KGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGR 116 (479)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~l~~A~~L~~-------~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ 116 (479)
+-|..|++++ ++.-.++.++|-.|.. +-..|....+|++|.++|.+-++ +|| ....+|..||.
T Consensus 1503 ~lNlEn~yG~--eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~K----KF~----q~~~vW~~y~~ 1572 (1710)
T KOG1070|consen 1503 YLNLENAYGT--EESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLK----KFG----QTRKVWIMYAD 1572 (1710)
T ss_pred HHhHHHhhCc--HHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHH----Hhc----chhhHHHHHHH
Confidence 4578888884 3445567777777766 33456677888999888776555 465 35579999999
Q ss_pred HHHhhhhccCC--cCCCCCCCcCCCCCCCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCC
Q 011692 117 ALLYKAQEEAD--PLVSVPKKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGN 194 (479)
Q Consensus 117 ALl~~ar~esd--vLG~~~~~~~e~~~~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~ 194 (479)
.|+.+-+.+.. +|+++.+-- + . ++.-
T Consensus 1573 fLl~~ne~~aa~~lL~rAL~~l-------------P--------------k---------~eHv---------------- 1600 (1710)
T KOG1070|consen 1573 FLLRQNEAEAARELLKRALKSL-------------P--------------K---------QEHV---------------- 1600 (1710)
T ss_pred HHhcccHHHHHHHHHHHHHhhc-------------c--------------h---------hhhH----------------
Confidence 99986332211 333211100 0 0 0000
Q ss_pred CCccccccccCcChH---HHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 011692 195 DGENVAEADEDESDL---DLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPD 271 (479)
Q Consensus 195 ~~E~~~~~~ed~~dl---e~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d 271 (479)
+-...| +-..---+++|.||+..+...|+..+.|+...+.-+..++.+-+...|++++.+.-.
T Consensus 1601 ---------~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~----- 1666 (1710)
T KOG1070|consen 1601 ---------EFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS----- 1666 (1710)
T ss_pred ---------HHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-----
Confidence 000000 000001166777777776666777788888777777777778888888877766432
Q ss_pred ChhHHHHHHHHHHHHHcCCChhHHHHHH
Q 011692 272 SRHIAELNFRICLCLEIGSKPQEAIPYC 299 (479)
Q Consensus 272 ~r~iAea~~~LG~ay~~~g~~eeAi~~~ 299 (479)
+.-+.-+|+.=+-|+...--++++++.
T Consensus 1667 -~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1667 -IKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred -hhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 223455566666666553334444443
No 264
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=89.20 E-value=1.9 Score=41.98 Aligned_cols=74 Identities=23% Similarity=0.192 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----------------------------HHHHhcC-CCChhHHHHHHHHHH
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALT----------------------------ILERMVE-PDSRHIAELNFRICL 284 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~----------------------------I~~~llg-~d~r~iAea~~~LG~ 284 (479)
..-+..||....+.|+|.+|..+|+++|. .++.++. +..++.++.+.-+|.
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR 168 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFAR 168 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHH
Confidence 44566788888888888888888887763 1122221 123445677888999
Q ss_pred HHHcCCChhHHHHHHHHHHHHHH
Q 011692 285 CLEIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 285 ay~~~g~~eeAi~~~ekAL~I~k 307 (479)
+|.-+|++.+|...|+.++..+.
T Consensus 169 ~laa~g~~a~Aesafe~a~~~yp 191 (251)
T COG4700 169 TLAAQGKYADAESAFEVAISYYP 191 (251)
T ss_pred HHHhcCCchhHHHHHHHHHHhCC
Confidence 99999999999999999998764
No 265
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=88.43 E-value=5.9 Score=31.28 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHH
Q 011692 276 AELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQR 312 (479)
Q Consensus 276 Aea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~~ 312 (479)
|..+.+.|+-+...|+|++|+.+|.+|++.+..-+..
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~ 41 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKS 41 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 4556677888889999999999999999987776653
No 266
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.38 E-value=0.2 Score=52.21 Aligned_cols=51 Identities=20% Similarity=0.320 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011692 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (479)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (479)
++.|.+...++.-++..|+|+.|+++|-.|+++ +|..|.+|-+-+.+++.+
T Consensus 111 ~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl 161 (377)
T KOG1308|consen 111 MDQANDKKVQASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKL 161 (377)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeec
Confidence 456889999999999999999999999999998 899999999999888876
No 267
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.33 E-value=2 Score=46.89 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHc
Q 011692 232 EKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEI 288 (479)
Q Consensus 232 ~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~ 288 (479)
+.-.+++++|..|+..|+--.|.++|.++...+... ...|.+|+-|+.+
T Consensus 333 ks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n--------PrlWLRlAEcCim 381 (696)
T KOG2471|consen 333 KSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN--------PRLWLRLAECCIM 381 (696)
T ss_pred cchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC--------cHHHHHHHHHHHH
Confidence 346789999999999999999999999999887654 2456666666544
No 268
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.11 E-value=10 Score=38.20 Aligned_cols=101 Identities=13% Similarity=0.124 Sum_probs=71.7
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HHHHh------------------
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALT-ILERM------------------ 267 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~-I~~~l------------------ 267 (479)
+.++.|...|..+....... ......+...-+.+....|+..+|+..++..+. .....
T Consensus 160 g~~~~A~~~l~~~~~~~~~~---~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (352)
T PF02259_consen 160 GNFQLALSALNRLFQLNPSS---ESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLE 236 (352)
T ss_pred CCcHHHHHHHHHHhccCCcc---cCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccc
Confidence 56666766655544332111 111456777778889999999999999988888 22222
Q ss_pred -------cCCCChhHHHHHHHHHHHHHcC------CChhHHHHHHHHHHHHHHHHH
Q 011692 268 -------VEPDSRHIAELNFRICLCLEIG------SKPQEAIPYCQKAISVCKSRV 310 (479)
Q Consensus 268 -------lg~d~r~iAea~~~LG~ay~~~------g~~eeAi~~~ekAL~I~k~rl 310 (479)
........|.+|+.+|.-.... +.+++++.+|++|+.+.....
T Consensus 237 ~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 292 (352)
T PF02259_consen 237 VISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE 292 (352)
T ss_pred cccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence 1223577899999999999988 889999999999999876543
No 269
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=88.10 E-value=2.8 Score=34.54 Aligned_cols=40 Identities=23% Similarity=0.294 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 011692 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGE 102 (479)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge 102 (479)
+++|..|+.+|...-..|+|++|..+|.+|++.+.....+
T Consensus 3 l~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ekn~ 42 (75)
T cd02680 3 LERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCINTSNE 42 (75)
T ss_pred HHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHhcCh
Confidence 5789999999999999999999999999999988774333
No 270
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=88.03 E-value=39 Score=35.70 Aligned_cols=37 Identities=16% Similarity=0.020 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHH
Q 011692 273 RHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSR 309 (479)
Q Consensus 273 r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~r 309 (479)
..-|.+||..|..+...++|.++|.+++.|+..++.-
T Consensus 249 ~f~A~A~y~~a~~~~~~~k~Ge~Ia~L~~A~~~l~~a 285 (361)
T cd09239 249 YYASIAHLHMGKQSEEQQKMGERVAYYQLANDKLEEA 285 (361)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999999999999999999998754433
No 271
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=87.69 E-value=11 Score=39.70 Aligned_cols=33 Identities=21% Similarity=0.069 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 274 HIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 274 ~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
..|.+||..|..+...++|.+||.+++.|...+
T Consensus 245 f~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l 277 (353)
T cd09246 245 FRAEALYRAAKDLHEKEDIGEEIARLRAASDAL 277 (353)
T ss_pred HHHHHHHHHHHHhHHhcchHHHHHHHHHHHHHH
Confidence 468899999999999999999999999998743
No 272
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=87.64 E-value=4.1 Score=33.37 Aligned_cols=58 Identities=22% Similarity=0.231 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hhCCCChhHHHHHHHHHHHHHh
Q 011692 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVS-HYGELALECVNAYYQYGRALLY 120 (479)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~-~~Ge~~pe~A~~y~~YG~ALl~ 120 (479)
+..|..|+.+|...-..|+|++|..+|..+++.+.. +-++.+|..-+.+-.-=.-|+.
T Consensus 3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl~ 61 (75)
T cd02677 3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYLK 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999998877 4478888776665544333333
No 273
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=87.61 E-value=41 Score=35.50 Aligned_cols=103 Identities=17% Similarity=0.066 Sum_probs=68.0
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
+.+.-|+ |.|+.++.=.+.. +---+...|--..+..++|+-=+..++..+...... --..+...-|.+++||
T Consensus 117 G~~rTAl---E~~KlLlsLdp~~--DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~lPn~a~S~aLA~ 188 (360)
T PF04910_consen 117 GCWRTAL---EWCKLLLSLDPDE--DPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSLLPNFAFSIALAY 188 (360)
T ss_pred CcHHHHH---HHHHHHHhcCCCC--CcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhhCccHHHHHHHHH
Confidence 4566665 4566666433331 122345555566677788877777777655521100 0001335678888888
Q ss_pred HcCCCh---------------hHHHHHHHHHHHHHHHHHHHHHHHH
Q 011692 287 EIGSKP---------------QEAIPYCQKAISVCKSRVQRLLNEV 317 (479)
Q Consensus 287 ~~~g~~---------------eeAi~~~ekAL~I~k~rl~~l~~~l 317 (479)
.+.++- +.|-...++||..+...+..|-+++
T Consensus 189 ~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~Ll~~l 234 (360)
T PF04910_consen 189 FRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPLLDKL 234 (360)
T ss_pred HHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 888888 8999999999999999999998777
No 274
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=87.23 E-value=18 Score=38.63 Aligned_cols=72 Identities=14% Similarity=-0.019 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---------HhcCC--------------CChhHHHHHHHHHHHHHcCC
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILE---------RMVEP--------------DSRHIAELNFRICLCLEIGS 290 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~---------~llg~--------------d~r~iAea~~~LG~ay~~~g 290 (479)
..+-..++.-+.++|++++|....+.+|+-.- .+.+. .|+.-+..|+-||..|...+
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~ 342 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNK 342 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhh
Confidence 34555677788888999999888877775321 11111 24444588999999999999
Q ss_pred ChhHHHHHHHHHHHH
Q 011692 291 KPQEAIPYCQKAISV 305 (479)
Q Consensus 291 ~~eeAi~~~ekAL~I 305 (479)
.|.+|-.+|+.||..
T Consensus 343 ~w~kA~~~leaAl~~ 357 (400)
T COG3071 343 LWGKASEALEAALKL 357 (400)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988854
No 275
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=87.10 E-value=33 Score=36.39 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEI 95 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei 95 (479)
..+.....++..+|..++|..|...|.+.+..
T Consensus 129 ~~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 129 VFGDREWRRAKELFNRYDYGAAARILEELLRR 160 (379)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 35667788899999999999999999998874
No 276
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=86.99 E-value=13 Score=38.90 Aligned_cols=38 Identities=24% Similarity=0.144 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHH
Q 011692 274 HIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQ 311 (479)
Q Consensus 274 ~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~ 311 (479)
..|.+||.+|..+...++|.+|+.+++.|...++....
T Consensus 237 ~~A~A~y~~A~~~~~~~~~G~aia~L~~A~~~l~~a~~ 274 (377)
T PF03097_consen 237 YRALAHYHQALAAEEAKKYGEAIARLRRAEEALKEASK 274 (377)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999999987666543
No 277
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=86.88 E-value=2.1 Score=46.84 Aligned_cols=99 Identities=17% Similarity=0.172 Sum_probs=66.9
Q ss_pred cChHHHHHHHHHHHHHH--HHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC------------
Q 011692 206 ESDLDLAWKMLDVARAI--AEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPD------------ 271 (479)
Q Consensus 206 ~~dle~Awe~Le~Ar~I--yek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d------------ 271 (479)
+.-++.||.--+....| -.+.+.-.++-|++|..|++=. .....+|...|+++++.-+..++.+
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~ 249 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA 249 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence 35578888432111111 1222223456789999998732 3346889999999999888877653
Q ss_pred -Ch----hHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 272 -SR----HIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 272 -~r----~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
++ -..-+-++|++|...+|+.++||++|+.-+..+
T Consensus 250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~ 289 (539)
T PF04184_consen 250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF 289 (539)
T ss_pred hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC
Confidence 11 134566889999999999999999998877543
No 278
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=86.69 E-value=13 Score=42.83 Aligned_cols=68 Identities=19% Similarity=0.155 Sum_probs=43.8
Q ss_pred cchHHHHHHHHHH------HHHhcCCHHHHHHHHHH------HHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHH
Q 011692 230 SMEKVDILSALAE------VALEREDIETSLSDYQK------ALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIP 297 (479)
Q Consensus 230 ~~~~A~v~~~LGe------v~le~g~yeeAl~dy~k------AL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~ 297 (479)
-..+|+-|.++|+ ++.+.+.|..||.+|.+ |.++.++..+++.. ...|.--+--+...|+|.+|..
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e~t--~~~yiakaedldehgkf~eaeq 845 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPEAT--ISLYIAKAEDLDEHGKFAEAEQ 845 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCchhH--HHHHHHhHHhHHhhcchhhhhh
Confidence 3567777777764 57778888889988865 56666666665542 3344445555667777765555
Q ss_pred HH
Q 011692 298 YC 299 (479)
Q Consensus 298 ~~ 299 (479)
.|
T Consensus 846 ly 847 (1636)
T KOG3616|consen 846 LY 847 (1636)
T ss_pred ee
Confidence 44
No 279
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.46 E-value=23 Score=38.98 Aligned_cols=129 Identities=15% Similarity=0.078 Sum_probs=90.4
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCC---cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 011692 206 ESDLDLAWKMLDVARAIAEKHWGD---SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRI 282 (479)
Q Consensus 206 ~~dle~Awe~Le~Ar~Iyek~~~~---~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~L 282 (479)
-++++.|.+.+-..+..+.+.+.. .-..+.+|..||.-++..+.|+.|..+|..|+++-.+. ...|.+..||
T Consensus 336 ~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nlnl 410 (629)
T KOG2300|consen 336 RGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQAFCNLNL 410 (629)
T ss_pred hCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHHhH
Confidence 367778887777778888887652 23358999999999999999999999999999987654 2368888899
Q ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccccccccccccccccchhhhHHHHHHHHHHhh
Q 011692 283 CLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGL 362 (479)
Q Consensus 283 G~ay~~~g~~eeAi~~~ekAL~I~k~rl~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Eieelk~l 362 (479)
+.+|...++.+ .+| ++ ++......+. .-+....++-|.-+.+|
T Consensus 411 Ai~YL~~~~~e---d~y-~~--------------ld~i~p~nt~-------------------s~ssq~l~a~~~~v~gl 453 (629)
T KOG2300|consen 411 AISYLRIGDAE---DLY-KA--------------LDLIGPLNTN-------------------SLSSQRLEASILYVYGL 453 (629)
T ss_pred HHHHHHhccHH---HHH-HH--------------HHhcCCCCCC-------------------cchHHHHHHHHHHHHHH
Confidence 99998877532 222 22 2222110000 01224667788888888
Q ss_pred HHHHHHHHHHHHHh
Q 011692 363 CGDLEKKLEDLQQV 376 (479)
Q Consensus 363 l~dl~~KieDlk~~ 376 (479)
..=++-++.+.|..
T Consensus 454 faf~qn~lnEaK~~ 467 (629)
T KOG2300|consen 454 FAFKQNDLNEAKRF 467 (629)
T ss_pred HHHHhccHHHHHHH
Confidence 88888888877654
No 280
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=86.24 E-value=17 Score=32.65 Aligned_cols=75 Identities=23% Similarity=0.297 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 011692 235 DILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLL 314 (479)
Q Consensus 235 ~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~~l~ 314 (479)
..+..|..+.+..-.++.-+...++||.=+..+- +| +.+|...|.++.+. ..++++.-.+.-++.++.||..|+
T Consensus 17 qLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~-eD----~~vYk~VG~llvk~-~k~~~~~eL~er~E~Le~ri~tLe 90 (119)
T COG1382 17 QLQQQLQKVILQKQQLEAQLKEIEKALEELEKLD-ED----APVYKKVGNLLVKV-SKEEAVDELEERKETLELRIKTLE 90 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cc----cHHHHHhhhHHhhh-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777888888888777663 22 37899999999888 667787777777776666666664
Q ss_pred H
Q 011692 315 N 315 (479)
Q Consensus 315 ~ 315 (479)
+
T Consensus 91 k 91 (119)
T COG1382 91 K 91 (119)
T ss_pred H
Confidence 4
No 281
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.01 E-value=0.73 Score=29.65 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHH
Q 011692 277 ELNFRICLCLEIGSKPQEAIPYCQK 301 (479)
Q Consensus 277 ea~~~LG~ay~~~g~~eeAi~~~ek 301 (479)
.+++.||.+|..+|++++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 5789999999999999999988763
No 282
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=86.01 E-value=6.9 Score=44.22 Aligned_cols=97 Identities=16% Similarity=0.240 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 011692 208 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 287 (479)
Q Consensus 208 dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~ 287 (479)
||+.++-.++..+..|.+.++..+-.-++-.|.|...-+..-|++|-..|++-+.|++ .|.-..|=.+|.---+.-.
T Consensus 485 DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk---~p~v~diW~tYLtkfi~ry 561 (835)
T KOG2047|consen 485 DLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFK---WPNVYDIWNTYLTKFIKRY 561 (835)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC---CccHHHHHHHHHHHHHHHh
Confidence 5667777788888888888775544556777888888888888888888888877653 2223334444444444433
Q ss_pred cCCChhHHHHHHHHHHHHHH
Q 011692 288 IGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 288 ~~g~~eeAi~~~ekAL~I~k 307 (479)
-.-+++.|...|++||+.|.
T Consensus 562 gg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 562 GGTKLERARDLFEQALDGCP 581 (835)
T ss_pred cCCCHHHHHHHHHHHHhcCC
Confidence 33367888888888887663
No 283
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=85.91 E-value=17 Score=36.94 Aligned_cols=138 Identities=16% Similarity=0.186 Sum_probs=76.9
Q ss_pred CcChHHHHHHHHHHHHHHHHHhcCC----cc---h-HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCCh
Q 011692 205 DESDLDLAWKMLDVARAIAEKHWGD----SM---E-KVDILSALAEVALERED---IETSLSDYQKALTILERMVEPDSR 273 (479)
Q Consensus 205 d~~dle~Awe~Le~Ar~Iyek~~~~----~~---~-~A~v~~~LGev~le~g~---yeeAl~dy~kAL~I~~~llg~d~r 273 (479)
.++.|+.=-....+.+.||.||++- .+ . ....+..|..|-.++.+ .+-.-.++..++.+...+-
T Consensus 88 ~VngY~Vk~S~~silq~If~KHGDIAsNc~lkS~~~RS~yLe~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLe----- 162 (269)
T PF05278_consen 88 SVNGYQVKPSQVSILQKIFEKHGDIASNCKLKSQQFRSYYLECLCDIIQELQSTPLKELSESDLKEMIATLKDLE----- 162 (269)
T ss_pred eECCEEEcHhHHHHHHHHHHhCccHhhccccCcHHHHHHHHHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHH-----
Confidence 3677776667778899999999762 11 1 12223334444333322 2334455666666665542
Q ss_pred hHHHHHHHHHHHHHcCCChhHHHHHHHH------HHHHHHHHHHHHHHHHhhhccCCCCCCCccccccccccccccccch
Q 011692 274 HIAELNFRICLCLEIGSKPQEAIPYCQK------AISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDK 347 (479)
Q Consensus 274 ~iAea~~~LG~ay~~~g~~eeAi~~~ek------AL~I~k~rl~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 347 (479)
.+-.++++.......+-+|.++|.+ -.+..++.|...+.+++... .
T Consensus 163 ---sa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~-------------------------E 214 (269)
T PF05278_consen 163 ---SAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELE-------------------------E 214 (269)
T ss_pred ---HcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------H
Confidence 3344444444444444455555543 22223334444444443331 2
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHH
Q 011692 348 LLTDKEAEIETLSGLCGDLEKKLEDLQQ 375 (479)
Q Consensus 348 ~~~~~~~Eieelk~ll~dl~~KieDlk~ 375 (479)
+....++++.+++.=+.++..||.+|+.
T Consensus 215 eL~~~Eke~~e~~~~i~e~~~rl~~l~~ 242 (269)
T PF05278_consen 215 ELKQKEKEVKEIKERITEMKGRLGELEM 242 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888888888875
No 284
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=85.87 E-value=47 Score=34.52 Aligned_cols=52 Identities=19% Similarity=0.095 Sum_probs=35.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQ 258 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~ 258 (479)
..|...--+|-.+..-|.+.++.......+|..+|+.+.+.+.....+.++-
T Consensus 79 ~~ypq~e~~Lg~~mik~gkeLg~dSs~g~tl~~~Gesm~~i~evk~sl~~~v 130 (366)
T KOG1118|consen 79 KGYPQTEGLLGDVMIKHGKELGDDSSFGHTLIDAGESMREIGEVKDSLDDNV 130 (366)
T ss_pred CCCccchhHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566667777777777666677777778888777777766665543
No 285
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.86 E-value=1.4 Score=46.42 Aligned_cols=82 Identities=22% Similarity=0.207 Sum_probs=60.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
.||.-|..+|+.++..-+ .+--++..-||-+++.+|+|++|+..|+-... + ++ --++...+|+.|+
T Consensus 36 rDytGAislLefk~~~~~------EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~--~-----~~-~~~el~vnLAcc~ 101 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDR------EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN--K-----DD-APAELGVNLACCK 101 (557)
T ss_pred ccchhHHHHHHHhhccch------hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc--c-----CC-CCcccchhHHHHH
Confidence 467778888887763321 12245566788889999999999999986544 1 11 1267888999999
Q ss_pred HcCCChhHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKA 302 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekA 302 (479)
.++|.|.+|.....+|
T Consensus 102 FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 102 FYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999998887775
No 286
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.82 E-value=0.87 Score=29.29 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 011692 235 DILSALAEVALEREDIETSLSDYQ 258 (479)
Q Consensus 235 ~v~~~LGev~le~g~yeeAl~dy~ 258 (479)
.++..||.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 478899999999999999998876
No 287
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=85.38 E-value=2.5 Score=48.78 Aligned_cols=75 Identities=19% Similarity=0.225 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcC
Q 011692 210 DLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIG 289 (479)
Q Consensus 210 e~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~ 289 (479)
..=+-||+.|+.||.+. .-|..|-.+|...|.+.+|+ +|.+.. |.-++=.+||+.+.-++..
T Consensus 810 AieLgMlEeA~~lYr~c--------kR~DLlNKlyQs~g~w~eA~-------eiAE~~---DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQC--------KRYDLLNKLYQSQGMWSEAF-------EIAETK---DRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred HHHHhhHHHHHHHHHHH--------HHHHHHHHHHHhcccHHHHH-------HHHhhc---cceehhhhHHHHHHHHHhh
Confidence 33345677777777654 23566666666666655554 444332 3334668999999999999
Q ss_pred CChhHHHHHHHHH
Q 011692 290 SKPQEAIPYCQKA 302 (479)
Q Consensus 290 g~~eeAi~~~ekA 302 (479)
++.+.|++||+|+
T Consensus 872 ~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 872 RDIEAALEYYEKA 884 (1416)
T ss_pred ccHHHHHHHHHhc
Confidence 9999999999984
No 288
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=85.36 E-value=32 Score=39.77 Aligned_cols=73 Identities=16% Similarity=0.133 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHH------HHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 233 KVDILSALAEVALEREDIETSLSDYQ------KALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~yeeAl~dy~------kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
..+.|..-|+++-...+|++|+++|+ +|+++.+-.||..- ...--..|.-+.+.|+|+.|+.||-.|--+.
T Consensus 660 k~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~ev---v~lee~wg~hl~~~~q~daainhfiea~~~~ 736 (1636)
T KOG3616|consen 660 KGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEV---VKLEEAWGDHLEQIGQLDAAINHFIEANCLI 736 (1636)
T ss_pred hhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHH---hhHHHHHhHHHHHHHhHHHHHHHHHHhhhHH
Confidence 35678999999999999999999986 56777776665443 3333456888999999999999998876655
Q ss_pred HH
Q 011692 307 KS 308 (479)
Q Consensus 307 k~ 308 (479)
+.
T Consensus 737 ka 738 (1636)
T KOG3616|consen 737 KA 738 (1636)
T ss_pred HH
Confidence 44
No 289
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.35 E-value=2.9 Score=42.18 Aligned_cols=88 Identities=18% Similarity=0.310 Sum_probs=69.7
Q ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC----------ChhHHHHHHHHHHHHHcCCChhHHHHHHH
Q 011692 231 MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPD----------SRHIAELNFRICLCLEIGSKPQEAIPYCQ 300 (479)
Q Consensus 231 ~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d----------~r~iAea~~~LG~ay~~~g~~eeAi~~~e 300 (479)
+....++.--|.-++..|+|.+|...|+.|+-+.+.+.-.+ .+.+.-.|.|.+.||...++|=++++|+.
T Consensus 175 mkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s 254 (329)
T KOG0545|consen 175 MKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS 254 (329)
T ss_pred hhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH
Confidence 44567788889999999999999999999999988874322 34566788999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 011692 301 KAISVCKSRVQRLLNEVK 318 (479)
Q Consensus 301 kAL~I~k~rl~~l~~~l~ 318 (479)
..|.........+=..-+
T Consensus 255 eiL~~~~~nvKA~frRak 272 (329)
T KOG0545|consen 255 EILRHHPGNVKAYFRRAK 272 (329)
T ss_pred HHHhcCCchHHHHHHHHH
Confidence 888766555554444333
No 290
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=85.14 E-value=17 Score=32.28 Aligned_cols=46 Identities=15% Similarity=0.007 Sum_probs=36.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhh
Q 011692 72 KGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKA 122 (479)
Q Consensus 72 ~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a 122 (479)
++..++..||+-+|.++....+.. ||+... +..+++.=|..++++|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~----h~~~~~-~~~lh~~QG~if~~lA 47 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISR----HGEDES-SWLLHRLQGTIFYKLA 47 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHH----ccCCCc-hHHHHHHHhHHHHHHH
Confidence 466789999999999998888775 665433 3478888899999885
No 291
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=84.90 E-value=4.5 Score=40.81 Aligned_cols=82 Identities=15% Similarity=0.097 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhH
Q 011692 216 LDVARAIAEKHWGDSMEKVDILSALAEVALE-REDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQE 294 (479)
Q Consensus 216 Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le-~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~ee 294 (479)
++.||.+|.+......-.-.+|...|.+-.. .++.+.|..-|+.+|+.... +..+-..|. .-+...++.+.
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~-----~~~~~~~Y~---~~l~~~~d~~~ 88 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS-----DPDFWLEYL---DFLIKLNDINN 88 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT------HHHHHHHH---HHHHHTT-HHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-----CHHHHHHHH---HHHHHhCcHHH
Confidence 4667777777654333356789999999666 67777799999999976432 333322222 44456789999
Q ss_pred HHHHHHHHHHH
Q 011692 295 AIPYCQKAISV 305 (479)
Q Consensus 295 Ai~~~ekAL~I 305 (479)
|...|++++..
T Consensus 89 aR~lfer~i~~ 99 (280)
T PF05843_consen 89 ARALFERAISS 99 (280)
T ss_dssp HHHHHHHHCCT
T ss_pred HHHHHHHHHHh
Confidence 99999998753
No 292
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.64 E-value=0.33 Score=50.60 Aligned_cols=76 Identities=13% Similarity=-0.060 Sum_probs=62.4
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011692 222 IAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 301 (479)
Q Consensus 222 Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ek 301 (479)
.|-+.....+..|..|..-|.|++++.+...||.+|..|+.|-. ..|.-|--.|.+...+|++.+|..++..
T Consensus 136 ~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~--------Dsa~~ykfrg~A~rllg~~e~aa~dl~~ 207 (377)
T KOG1308|consen 136 LFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINP--------DSAKGYKFRGYAERLLGNWEEAAHDLAL 207 (377)
T ss_pred ccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCc--------ccccccchhhHHHHHhhchHHHHHHHHH
Confidence 33333334567899999999999999999999999999998843 4467788889999999999999999988
Q ss_pred HHHH
Q 011692 302 AISV 305 (479)
Q Consensus 302 AL~I 305 (479)
|+.+
T Consensus 208 a~kl 211 (377)
T KOG1308|consen 208 ACKL 211 (377)
T ss_pred HHhc
Confidence 8764
No 293
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=84.48 E-value=8.5 Score=31.73 Aligned_cols=48 Identities=17% Similarity=0.119 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHH
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHY-GELALECVNAYY 112 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~-Ge~~pe~A~~y~ 112 (479)
.|..+..++..+-..|+|.+|+.||++|.+++.+.. +.........|.
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr 53 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYE 53 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 478889999999999999999999999999887764 333333344433
No 294
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=84.29 E-value=12 Score=37.32 Aligned_cols=113 Identities=19% Similarity=0.095 Sum_probs=71.2
Q ss_pred CcChHHHHHHHHHHHHHHHHHhcCC-----cchHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 011692 205 DESDLDLAWKMLDVARAIAEKHWGD-----SMEKVDILSALAEVALERED-IETSLSDYQKALTILERMVEPDSRHIAEL 278 (479)
Q Consensus 205 d~~dle~Awe~Le~Ar~Iyek~~~~-----~~~~A~v~~~LGev~le~g~-yeeAl~dy~kAL~I~~~llg~d~r~iAea 278 (479)
|.++|+.|+++.+.|+.--...++. .--+++-...-+......|+ |+-+ +++....|... ..-.....|..
T Consensus 95 D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~--~~~~~~~l~~~-~dmpd~vrAKl 171 (230)
T PHA02537 95 DIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPY--FLRVFLDLTTE-WDMPDEVRAKL 171 (230)
T ss_pred eccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChH--HHHHHHHHHhc-CCCChHHHHHH
Confidence 4689999988877776432222221 11245655566666666665 2222 23333344322 22234556788
Q ss_pred HHHHHHHHH---------cCCChhHHHHHHHHHHHH-----HHHHHHHHHHHHhhh
Q 011692 279 NFRICLCLE---------IGSKPQEAIPYCQKAISV-----CKSRVQRLLNEVKSL 320 (479)
Q Consensus 279 ~~~LG~ay~---------~~g~~eeAi~~~ekAL~I-----~k~rl~~l~~~l~~~ 320 (479)
|--+|..+. ..+++..|+.+|++|+.+ .+..|++|+..|+.+
T Consensus 172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~~i~~l~~~lr~~ 227 (230)
T PHA02537 172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKKDIERLERRLKAL 227 (230)
T ss_pred HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhc
Confidence 888999883 456788999999999999 567788888777644
No 295
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=84.23 E-value=5.8 Score=36.60 Aligned_cols=70 Identities=14% Similarity=0.138 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 233 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRH-IAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~-iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
..++.++|+.......+- .|-++-+.|++.++...||. -=+.+|.|++.|.+.++|+.++.|+...|++-
T Consensus 31 s~~s~f~lAwaLV~S~~~----~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDT----EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred hHHHHHHHHHHHHcccch----HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 467888999888887664 46778888888888633222 34889999999999999999999998888764
No 296
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=83.93 E-value=1.7 Score=44.39 Aligned_cols=93 Identities=14% Similarity=0.049 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhH
Q 011692 217 DVARAIAEKHWGDSMEKVDILSALAEVALERE--DIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQE 294 (479)
Q Consensus 217 e~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g--~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~ee 294 (479)
++|+.++.+...-..+-.-+....+.|.+..| +|.+|.-.|++... .++ ....+++.++.|+..+|+|++
T Consensus 148 dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~----~~~----~t~~~lng~A~~~l~~~~~~e 219 (290)
T PF04733_consen 148 DLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD----KFG----STPKLLNGLAVCHLQLGHYEE 219 (290)
T ss_dssp HHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC----CS------SHHHHHHHHHHHHHCT-HHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh----ccC----CCHHHHHHHHHHHHHhCCHHH
Confidence 44555554432211122223334444555544 57777777776321 222 234668899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011692 295 AIPYCQKAISVCKSRVQRLLNEV 317 (479)
Q Consensus 295 Ai~~~ekAL~I~k~rl~~l~~~l 317 (479)
|...+++|+..-...-..|-|.+
T Consensus 220 Ae~~L~~al~~~~~~~d~LaNli 242 (290)
T PF04733_consen 220 AEELLEEALEKDPNDPDTLANLI 242 (290)
T ss_dssp HHHHHHHHCCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCHHHHHHHH
Confidence 99999998876655555555543
No 297
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.74 E-value=8.6 Score=37.47 Aligned_cols=87 Identities=23% Similarity=0.096 Sum_probs=59.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++|+.|...|.-++.- ..+..-.+-+-.+|+.|.+.++.|++|+..+. ... ++--.+......|.+|
T Consensus 103 ~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~-------t~~--~~~w~~~~~elrGDil 169 (207)
T COG2976 103 NNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLD-------TIK--EESWAAIVAELRGDIL 169 (207)
T ss_pred ccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-------ccc--cccHHHHHHHHhhhHH
Confidence 5677776666544421 11111234566789999999999998875543 222 2323455566789999
Q ss_pred HcCCChhHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~ 306 (479)
...|+-++|+..|++|+.+.
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 99999999999999999874
No 298
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=83.67 E-value=2.1 Score=35.57 Aligned_cols=37 Identities=11% Similarity=0.008 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHH
Q 011692 273 RHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSR 309 (479)
Q Consensus 273 r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~r 309 (479)
...|..+.+.|+.+...|..++|+.+|++++.++..-
T Consensus 5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg 41 (79)
T cd02679 5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEG 41 (79)
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHH
Confidence 3457778888899999999999999999999875544
No 299
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.46 E-value=83 Score=35.34 Aligned_cols=155 Identities=16% Similarity=0.114 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCC
Q 011692 63 VEFADELMEKGTNAL-KESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQ 141 (479)
Q Consensus 63 l~~A~~L~~~G~~~~-~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~ 141 (479)
..+|...+.+|..++ .-.+++.|..+++++..+... ...-..-..+.|.+.+.|+..
T Consensus 56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d~k~~~~~ll~~i~~~~-------------------- 113 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCER--HRLTDLKFRCQFLLARIYFKT-------------------- 113 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHhc--------------------
Confidence 346788888998888 668999999999999888655 222222334444444444432
Q ss_pred CCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHH
Q 011692 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARA 221 (479)
Q Consensus 142 ~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~ 221 (479)
+...|...++.++.
T Consensus 114 ------------------------------------------------------------------~~~~a~~~l~~~I~ 127 (608)
T PF10345_consen 114 ------------------------------------------------------------------NPKAALKNLDKAIE 127 (608)
T ss_pred ------------------------------------------------------------------CHHHHHHHHHHHHH
Confidence 11116777777777
Q ss_pred HHHHhcCCcchHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHH
Q 011692 222 IAEKHWGDSMEKVDILSAL-AEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQ 300 (479)
Q Consensus 222 Iyek~~~~~~~~A~v~~~L-Gev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~e 300 (479)
.++... +.....++..| ...++..+++..|+..+++...+..... +.-....+.+-.++++.+.+..+++++..+
T Consensus 128 ~~~~~~--~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~--d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~ 203 (608)
T PF10345_consen 128 DSETYG--HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRG--DPAVFVLASLSEALLHLRRGSPDDVLELLQ 203 (608)
T ss_pred HHhccC--chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcC--CHHHHHHHHHHHHHHHhcCCCchhHHHHHH
Confidence 776532 12233344344 3344444899999999999988876432 222234455556777788888999999999
Q ss_pred HHHHHHHHH
Q 011692 301 KAISVCKSR 309 (479)
Q Consensus 301 kAL~I~k~r 309 (479)
+++......
T Consensus 204 ~~~~~~~~~ 212 (608)
T PF10345_consen 204 RAIAQARSL 212 (608)
T ss_pred HHHHHHhhc
Confidence 987765543
No 300
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=83.09 E-value=1.1e+02 Score=37.40 Aligned_cols=211 Identities=12% Similarity=0.003 Sum_probs=120.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc-----CCCCC
Q 011692 59 REKTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP-----LVSVP 133 (479)
Q Consensus 59 ~~~~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv-----LG~~~ 133 (479)
+.+..-........|.-++-.|+|.+|+..|.+|++++.. ..++.=.|.+|=.++.|++-++-...+. +...+
T Consensus 235 ~~~~r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~--~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~ 312 (1185)
T PF08626_consen 235 RSRKRCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKS--SNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLC 312 (1185)
T ss_pred ccchhhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhh--cCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccC
Confidence 4455556777888999999999999999999999999766 3456666666666666666554332221 00000
Q ss_pred CCcCCCCCCCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHH
Q 011692 134 KKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAW 213 (479)
Q Consensus 134 ~~~~e~~~~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Aw 213 (479)
... . ..+...+ ..... ....++..+. .... ... . .-.-..-..+--
T Consensus 313 ~~~-~---~~~~~s~-~~~~~--~~~~sP~~s~----~~~~--~~~----~-----------------~~~~~~l~~~i~ 358 (1185)
T PF08626_consen 313 PIS-S---STSSSSP-RNSSS--SSTQSPRNSV----SSSS--SSN----I-----------------DVNLVNLPNLIP 358 (1185)
T ss_pred CCC-C---ccCccCc-ccCCc--cCCCCCCccc----cCCC--ccc----c-----------------chhhccCHhhhh
Confidence 000 0 0000000 00000 0000000000 0000 000 0 000011122223
Q ss_pred HHHHHHHHHHHHhcC------CcchHHHHHHHHHHHHHhcC--------------------CHHHHHHHHHHHHHHHHHh
Q 011692 214 KMLDVARAIAEKHWG------DSMEKVDILSALAEVALERE--------------------DIETSLSDYQKALTILERM 267 (479)
Q Consensus 214 e~Le~Ar~Iyek~~~------~~~~~A~v~~~LGev~le~g--------------------~yeeAl~dy~kAL~I~~~l 267 (479)
++++.++..|.+... ..+=.+++..+++.+..... .-.++..+..+++.+....
T Consensus 359 ~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~ 438 (1185)
T PF08626_consen 359 DLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKD 438 (1185)
T ss_pred HHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhh
Confidence 456777777777652 12335678888888888888 8889999999999998876
Q ss_pred cCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 011692 268 VEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 268 lg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k 307 (479)
++..++ ..+|..|+.+|...|-+-++.=+.+.++-.+-
T Consensus 439 l~~~dq--i~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~~ 476 (1185)
T PF08626_consen 439 LSVEDQ--IRIYSGLASVYGSLGFHRKKAFVLRELAVQLV 476 (1185)
T ss_pred CCHHHH--HHHHHHHHHHHHhcchhHHHHHHHHHHHHHhc
Confidence 654443 58899999999999977666666666665553
No 301
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=82.60 E-value=8 Score=42.36 Aligned_cols=101 Identities=21% Similarity=0.208 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHH-----------------------------H
Q 011692 208 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDY-----------------------------Q 258 (479)
Q Consensus 208 dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy-----------------------------~ 258 (479)
+|++.+..++++|.+|++.+...|.-..++...|++-..+|+.+.|...| +
T Consensus 445 elElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~e 524 (677)
T KOG1915|consen 445 ELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFE 524 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHH
Confidence 57788888999999999999877877777777777777777766665544 4
Q ss_pred HHHHHHHHhcCCC-Ch--hHHHHHHHHHHHHHcCC-----------ChhHHHHHHHHHHHHHHH
Q 011692 259 KALTILERMVEPD-SR--HIAELNFRICLCLEIGS-----------KPQEAIPYCQKAISVCKS 308 (479)
Q Consensus 259 kAL~I~~~llg~d-~r--~iAea~~~LG~ay~~~g-----------~~eeAi~~~ekAL~I~k~ 308 (479)
++-.|.+.++... |. =|..+.|.++......+ ....|...|++|...++.
T Consensus 525 kaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~ 588 (677)
T KOG1915|consen 525 KARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKE 588 (677)
T ss_pred HHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHh
Confidence 4445555555432 22 24555555555555555 455677777777776653
No 302
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=82.09 E-value=29 Score=34.37 Aligned_cols=85 Identities=22% Similarity=0.187 Sum_probs=57.7
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALERE-------DIETSLSDYQKALTILERMVEPDSRHIAELN 279 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g-------~yeeAl~dy~kAL~I~~~llg~d~r~iAea~ 279 (479)
.|+..|..+|.+|-.. ++. .-+.+..+||..|..-. ++..|+..|.++-... ...+.
T Consensus 127 ~d~~~A~~~~~~Aa~~-----g~~-~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~----------~~~a~ 190 (292)
T COG0790 127 LDLVKALKYYEKAAKL-----GNV-EAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG----------NPDAQ 190 (292)
T ss_pred cCHHHHHHHHHHHHHc-----CCh-hHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc----------CHHHH
Confidence 4677787777766432 111 11455888888887763 2236666666665554 35889
Q ss_pred HHHHHHHHcC----CChhHHHHHHHHHHHHHH
Q 011692 280 FRICLCLEIG----SKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 280 ~~LG~ay~~~----g~~eeAi~~~ekAL~I~k 307 (479)
++||.+|... .++.+|+..|++|.+.-.
T Consensus 191 ~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 191 LLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999999774 378999999999987543
No 303
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.08 E-value=2.3 Score=47.77 Aligned_cols=68 Identities=19% Similarity=0.123 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 237 LSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 237 ~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
+-+-+.-+++..+|..++..|..+|.....- ..++..|...-+|+.||..+.+.+.|+++|+.|-+.-
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D--~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d 424 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISD--NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD 424 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccch--hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Confidence 3345677889999999999999998765432 2477789999999999999999999999999987654
No 304
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.92 E-value=21 Score=39.38 Aligned_cols=75 Identities=15% Similarity=0.106 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH
Q 011692 232 EKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 308 (479)
Q Consensus 232 ~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~ 308 (479)
..+.+++.-|-..+.+++|.+|...+++.|++... ....|.+|-.+.-||.++...|+..++.+...-++.+-++
T Consensus 443 l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmana--ed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkK 517 (629)
T KOG2300|consen 443 LEASILYVYGLFAFKQNDLNEAKRFLRETLKMANA--EDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKK 517 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcch--hhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhc
Confidence 35778999999999999999999999999999833 3347889999999999999999999999888888876544
No 305
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=81.42 E-value=78 Score=33.63 Aligned_cols=114 Identities=23% Similarity=0.232 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHHHHHhc--------CCC-ChhHHHHHHHH
Q 011692 232 EKVDILSALAEVALERED--------------------IETSLSDYQKALTILERMV--------EPD-SRHIAELNFRI 282 (479)
Q Consensus 232 ~~A~v~~~LGev~le~g~--------------------yeeAl~dy~kAL~I~~~ll--------g~d-~r~iAea~~~L 282 (479)
++|.+|..|-++.++..+ -..||.+|+.-+...+.-- ..+ -+.+-.+||.+
T Consensus 227 Elae~~~~i~dlk~~~~~~~~~~~~~~~~~~~~kin~l~~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~ 306 (371)
T PF12309_consen 227 ELAEIYSEIMDLKLEKLDEPQNDNEPPDDHALKKINQLCSKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYAYFHI 306 (371)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHHHHHH
Confidence 456666666666655443 3578889998888877321 112 45577899999
Q ss_pred HHHHHcC--CChhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccccccccccccccccchhhhHHHHHHHHHH
Q 011692 283 CLCLEIG--SKPQEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLS 360 (479)
Q Consensus 283 G~ay~~~--g~~eeAi~~~ekAL~I~k~rl~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Eieelk 360 (479)
|.+|... ++..+=+++++++|..++..+.--+..-. .....+.|++=-+
T Consensus 307 arl~~K~~~~~~~~~~~~l~~sl~~y~~vv~y~~~~~~-----------------------------~~~~~~~El~l~~ 357 (371)
T PF12309_consen 307 ARLYSKLITSDPKEQLENLEKSLEYYKWVVDYCEKHPE-----------------------------AAEEFEEELELCR 357 (371)
T ss_pred HHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHhChh-----------------------------hHHHHHHHHHHHH
Confidence 9999876 56666666667777666666554322110 0123367787788
Q ss_pred hhHHHHHHHHHHHH
Q 011692 361 GLCGDLEKKLEDLQ 374 (479)
Q Consensus 361 ~ll~dl~~KieDlk 374 (479)
+++.=|-.||..|+
T Consensus 358 EM~~LLP~Ki~~l~ 371 (371)
T PF12309_consen 358 EMVQLLPLKINRLK 371 (371)
T ss_pred HHHHHHHHHHHhcC
Confidence 88888888888764
No 306
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=81.31 E-value=14 Score=30.40 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHH
Q 011692 276 AELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQR 312 (479)
Q Consensus 276 Aea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~~ 312 (479)
|.-+...|+-+...|+|++|+.+|.+||+.|...+..
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~ 42 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKG 42 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence 5556677788899999999999999999998777653
No 307
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=79.77 E-value=15 Score=38.72 Aligned_cols=98 Identities=20% Similarity=0.201 Sum_probs=72.7
Q ss_pred ChHHHHHHHHHHHHHHHHH-----hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh----c---------
Q 011692 207 SDLDLAWKMLDVARAIAEK-----HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERM----V--------- 268 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek-----~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~l----l--------- 268 (479)
..|+.+...|..+...+.- .+..+|..++++..|++|+..+|++..|....++||=+.+.. +
T Consensus 8 ~~Y~~~q~~F~~~v~~~Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~ 87 (360)
T PF04910_consen 8 KAYQEAQEQFYAAVQSHDPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTS 87 (360)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 4677777777777654411 112356789999999999999999999999999999888843 2
Q ss_pred --------CCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 269 --------EPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 269 --------g~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
-+++|.+=.++|+....+.+.|-+.-|+++++--+.
T Consensus 88 g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLls 131 (360)
T PF04910_consen 88 GNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLS 131 (360)
T ss_pred CccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 124677777888888888888877777777655443
No 308
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=79.74 E-value=46 Score=35.85 Aligned_cols=33 Identities=18% Similarity=-0.069 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 274 HIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 274 ~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
.-|.+||.+|+.+...+++.+||.+++.|+..+
T Consensus 294 ~~A~A~~~~g~d~~e~~k~GeaIa~L~~A~~~L 326 (413)
T cd09245 294 ARALACKFLGIDAGENGKVGEAIGWLRAAKKEL 326 (413)
T ss_pred HHHHHHHHHHHhhHhcCCHHHHHHHHHHHHHHH
Confidence 348899999999999999999999999999853
No 309
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=79.74 E-value=13 Score=29.74 Aligned_cols=35 Identities=9% Similarity=0.080 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHH
Q 011692 277 ELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQ 311 (479)
Q Consensus 277 ea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~ 311 (479)
.-+.+.|+-+...|+|++|+.+|..|++.+..-+.
T Consensus 7 ~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~ 41 (75)
T cd02656 7 KELIKQAVKEDEDGNYEEALELYKEALDYLLQALK 41 (75)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhc
Confidence 34455667778889999999999999988776653
No 310
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=79.52 E-value=26 Score=28.84 Aligned_cols=33 Identities=15% Similarity=0.082 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILER 266 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~ 266 (479)
|--+...|.-.=..|+|++|+.+|+.+++.+..
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 445556666666789999999999999998866
No 311
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=78.28 E-value=43 Score=28.76 Aligned_cols=67 Identities=25% Similarity=0.336 Sum_probs=38.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 011692 243 VALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLN 315 (479)
Q Consensus 243 v~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~~l~~ 315 (479)
+......++.-+..++.++.=...+ +++ ..+|+.+|.++.. -..++|+...+.-++.+..++..+++
T Consensus 18 l~~~~~~l~~~~~E~~~v~~EL~~l-~~d----~~vy~~VG~vfv~-~~~~ea~~~Le~~~e~le~~i~~l~~ 84 (105)
T cd00632 18 YIVQRQKVEAQLNENKKALEELEKL-ADD----AEVYKLVGNVLVK-QEKEEARTELKERLETIELRIKRLER 84 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC-CCc----chHHHHhhhHHhh-ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555544433 222 3789999999877 44567777766666555555555433
No 312
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.14 E-value=13 Score=37.84 Aligned_cols=89 Identities=11% Similarity=-0.035 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHc
Q 011692 209 LDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEI 288 (479)
Q Consensus 209 le~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~ 288 (479)
+=.|-++++-|..+|++.+.+.|--.-+|-+-=-+...+|+--.||..+.+-|+++.. | .++++.|+-.|..
T Consensus 95 ~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~----D----~EAW~eLaeiY~~ 166 (289)
T KOG3060|consen 95 LLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN----D----QEAWHELAEIYLS 166 (289)
T ss_pred HHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC----c----HHHHHHHHHHHHh
Confidence 3456667777788888877655544445555555666778877899888877776543 2 3889999999999
Q ss_pred CCChhHHHHHHHHHHHH
Q 011692 289 GSKPQEAIPYCQKAISV 305 (479)
Q Consensus 289 ~g~~eeAi~~~ekAL~I 305 (479)
.++|++|+=||+..+=+
T Consensus 167 ~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 167 EGDFEKAAFCLEELLLI 183 (289)
T ss_pred HhHHHHHHHHHHHHHHc
Confidence 99999999999887643
No 313
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=78.01 E-value=3.8 Score=35.92 Aligned_cols=80 Identities=16% Similarity=0.322 Sum_probs=50.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh------------------hHHHHHHHHHHHHHcCCChhHHHHHHH
Q 011692 239 ALAEVALEREDIETSLSDYQKALTILERMVEPDSR------------------HIAELNFRICLCLEIGSKPQEAIPYCQ 300 (479)
Q Consensus 239 ~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r------------------~iAea~~~LG~ay~~~g~~eeAi~~~e 300 (479)
.|..+......+...+..|+.++.....+-..... ..-.++..||.=|...-.+++|+.+++
T Consensus 14 ~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ve~~~~eA~~~l~ 93 (129)
T cd00890 14 QLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYVEKSLEEAIEFLK 93 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEEEecHHHHHHHHH
Confidence 34444445556677777777777777766422110 112356777755555567788988888
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 011692 301 KAISVCKSRVQRLLNEVK 318 (479)
Q Consensus 301 kAL~I~k~rl~~l~~~l~ 318 (479)
+-++.++.++..+++.+.
T Consensus 94 ~r~~~l~~~~~~l~~~~~ 111 (129)
T cd00890 94 KRLETLEKQIEKLEKQLE 111 (129)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 877777777777655443
No 314
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=77.83 E-value=15 Score=30.29 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=22.1
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHHHHH
Q 011692 282 ICLCLEIGSKPQEAIPYCQKAISVCKS 308 (479)
Q Consensus 282 LG~ay~~~g~~eeAi~~~ekAL~I~k~ 308 (479)
-|+--...|+|++|+.+|.+||+.|..
T Consensus 12 ~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 12 QAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 344455678999999999999999877
No 315
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=77.29 E-value=6.2 Score=27.75 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH--HHHHH
Q 011692 67 DELMEKGTNALKESDYGEAAECFS--RALEI 95 (479)
Q Consensus 67 ~~L~~~G~~~~~~gdyeeAve~ys--~Alei 95 (479)
+.+...|..++.+|+|++|++.|+ -++.+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~l 32 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCAL 32 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 457889999999999999999966 66655
No 316
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=77.20 E-value=9 Score=33.94 Aligned_cols=94 Identities=13% Similarity=0.054 Sum_probs=53.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALER----EDIETSLSDYQKALTILERMVEPDSRHIAELNFRI 282 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~----g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~L 282 (479)
+|.-.|+++++.......+.. ...-.|...|.|+..+ +|-+-=..++..+++-..+... =+|.-|..+|.|
T Consensus 10 GnhiKAL~iied~i~~h~~~~----~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~-Lsp~~A~~L~~l 84 (111)
T PF04781_consen 10 GNHIKALEIIEDLISRHGEDE----SSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE-LSPDSAHSLFEL 84 (111)
T ss_pred cCHHHHHHHHHHHHHHccCCC----chHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc-cChhHHHHHHHH
Confidence 677788877776655443322 2235666677766544 3444444445555544444321 133338999999
Q ss_pred HHHHHcCCChhHHHHHHHHHHHH
Q 011692 283 CLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 283 G~ay~~~g~~eeAi~~~ekAL~I 305 (479)
|.=+....-|++++.-++++|.|
T Consensus 85 a~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 85 ASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcc
Confidence 98775555556666555555544
No 317
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=77.17 E-value=80 Score=31.25 Aligned_cols=63 Identities=16% Similarity=0.203 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCC---------------Chh
Q 011692 233 KVDILSALAEVALE----REDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGS---------------KPQ 293 (479)
Q Consensus 233 ~A~v~~~LGev~le----~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g---------------~~e 293 (479)
..++..+||.+|.. .-++.+|+..|.+|-+.- + ...+|+++ ++...| +..
T Consensus 186 ~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g-------~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~ 254 (292)
T COG0790 186 NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG-------D---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKK 254 (292)
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC-------C---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHH
Confidence 56788899988865 347889998888887653 2 58889999 555555 566
Q ss_pred HHHHHHHHHHHHH
Q 011692 294 EAIPYCQKAISVC 306 (479)
Q Consensus 294 eAi~~~ekAL~I~ 306 (479)
.|+..|.++....
T Consensus 255 ~a~~~~~~~~~~~ 267 (292)
T COG0790 255 QALEWLQKACELG 267 (292)
T ss_pred HHHHHHHHHHHcC
Confidence 7777777765543
No 318
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=76.93 E-value=21 Score=28.86 Aligned_cols=36 Identities=14% Similarity=0.073 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHH
Q 011692 276 AELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQ 311 (479)
Q Consensus 276 Aea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~ 311 (479)
|.-+.+-|+-....|+|++|+.+|.+|++.+..-+.
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k 41 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALK 41 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 344555667778899999999999999998876654
No 319
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=76.73 E-value=19 Score=28.84 Aligned_cols=35 Identities=20% Similarity=0.133 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH
Q 011692 276 AELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRV 310 (479)
Q Consensus 276 Aea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl 310 (479)
|..+...|+.+...|++++|+.+|.+|++.+..-+
T Consensus 8 A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~ 42 (77)
T smart00745 8 AKELISKALKADEAGDYEEALELYKKAIEYLLEGI 42 (77)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 44455667778889999999999999998876644
No 320
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=76.27 E-value=2.1 Score=46.54 Aligned_cols=72 Identities=17% Similarity=0.139 Sum_probs=62.4
Q ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcC
Q 011692 218 VARAIAEKHWG-DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIG 289 (479)
Q Consensus 218 ~Ar~Iyek~~~-~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~ 289 (479)
.|+.|.++.++ .++.++....--|-+|..+|+|+.-|...+-||.++++++.|-+|.++.++...+-.+.+.
T Consensus 320 qaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~m 392 (615)
T KOG0508|consen 320 QALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSFM 392 (615)
T ss_pred HHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHH
Confidence 57788888887 4677766666789999999999999999999999999999999999999998888777653
No 321
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=75.99 E-value=4.7 Score=39.48 Aligned_cols=59 Identities=15% Similarity=0.197 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH---HHHHHHHHHHHhh
Q 011692 253 SLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC---KSRVQRLLNEVKS 319 (479)
Q Consensus 253 Al~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~---k~rl~~l~~~l~~ 319 (479)
|+.+|.+|+.+.... ...|++||+++...+++=.|+=||-++|-+. ..-.++|..-++.
T Consensus 1 A~~~Y~~A~~l~P~~--------G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN--------GNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTB--------SHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCC--------CCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 788999999998665 5999999999999999999999999988553 2233444444444
No 322
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=75.79 E-value=85 Score=36.95 Aligned_cols=70 Identities=7% Similarity=-0.060 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k 307 (479)
..++..+...++. ++.+.....+.+++.....+..+-.- -.++.|+.++...|++++|..........+.
T Consensus 580 ~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~-~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 580 VRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSR-LALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred HHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 3455555555544 88888888888888776554332221 2237999999999999999888776655543
No 323
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.53 E-value=8.3 Score=32.19 Aligned_cols=57 Identities=16% Similarity=0.103 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEA 126 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~es 126 (479)
.+...+..|-++|.+.+..+|+.++..+|+.... .++...++-++-.||.+.|.++.
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~-----~~~rf~~lG~l~qA~~e~Gkyr~ 61 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITD-----REDRFRVLGYLIQAHMEWGKYRE 61 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCC-----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999998543 56788888888888888877643
No 324
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.34 E-value=30 Score=35.55 Aligned_cols=65 Identities=18% Similarity=0.174 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 233 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
..-++.+.+-||+-..+|..|...|.+++... ++.+.+.++-++|+.+.|+..+|++.++.++.+
T Consensus 251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D--------~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD--------PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hHHHHhhhhhheecccchHHHHHHHhhccccC--------CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45689999999999999999999999987653 334577889999999999999999888777654
No 325
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.23 E-value=15 Score=35.86 Aligned_cols=74 Identities=18% Similarity=0.112 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHH
Q 011692 217 DVARAIAEKHWG-DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEA 295 (479)
Q Consensus 217 e~Ar~Iyek~~~-~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeA 295 (479)
+.|+..|.+..+ ..++.+.....||..|. .-+-++|+..|-++|++... ++..-.+++..|+.+|..+++++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~----~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP----DDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHHHHHHhcchhhh
Confidence 567777777655 34677999999999998 56789999999999988653 3333468899999999999999887
No 326
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=74.87 E-value=6.6 Score=30.50 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=21.9
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHH
Q 011692 348 LLTDKEAEIETLSGLCGDLEKKLEDLQQ 375 (479)
Q Consensus 348 ~~~~~~~Eieelk~ll~dl~~KieDlk~ 375 (479)
.+..+++|+++|+.-+.+|++.+.||-.
T Consensus 15 ~i~tvk~en~~i~~~ve~i~envk~ll~ 42 (55)
T PF05377_consen 15 SINTVKKENEEISESVEKIEENVKDLLS 42 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888888888888877754
No 327
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.40 E-value=16 Score=37.41 Aligned_cols=85 Identities=19% Similarity=0.047 Sum_probs=66.2
Q ss_pred ChHHHHHHH-------HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 011692 207 SDLDLAWKM-------LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELN 279 (479)
Q Consensus 207 ~dle~Awe~-------Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~ 279 (479)
..|..||=- +.-|.-||+...+..+..-.+++-++.+++.++||++|...++.||.=..+. .+++
T Consensus 173 tQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d--------petL 244 (299)
T KOG3081|consen 173 TQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD--------PETL 244 (299)
T ss_pred HHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC--------HHHH
Confidence 457777843 3667888888766455567788899999999999999999999998754333 6899
Q ss_pred HHHHHHHHcCCChhHHHHHH
Q 011692 280 FRICLCLEIGSKPQEAIPYC 299 (479)
Q Consensus 280 ~~LG~ay~~~g~~eeAi~~~ 299 (479)
-|+=.+-...|+-.++.+-|
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred HHHHHHHHHhCCChHHHHHH
Confidence 99999999999887765543
No 328
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=73.55 E-value=31 Score=34.78 Aligned_cols=90 Identities=9% Similarity=0.063 Sum_probs=53.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
+|...|+.+|++++..|-.. .+.+..-.+..+..++.+.|...|++|+.. ++.+. ..-.++.+.-.--
T Consensus 50 ~d~~~A~~Ife~glk~f~~~-------~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~----l~~~~-~~~~iw~~~i~fE 117 (280)
T PF05843_consen 50 KDPKRARKIFERGLKKFPSD-------PDFWLEYLDFLIKLNDINNARALFERAISS----LPKEK-QSKKIWKKFIEFE 117 (280)
T ss_dssp S-HHHHHHHHHHHHHHHTT--------HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT----SSCHH-HCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHhCcHHHHHHHHHHHHHh----cCchh-HHHHHHHHHHHHH
Confidence 35667888888888776432 334444456778889999999999999876 22111 0112222222222
Q ss_pred HcCCChhHHHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVCKS 308 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~k~ 308 (479)
...|+++.....++++.+++..
T Consensus 118 ~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 118 SKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHcCCHHHHHHHHHHHHHHhhh
Confidence 3446777777777777776654
No 329
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=73.09 E-value=23 Score=29.46 Aligned_cols=36 Identities=31% Similarity=0.195 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 011692 236 ILSALAEVALEREDIETSLSDYQKALTILERMVEPD 271 (479)
Q Consensus 236 v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d 271 (479)
.+...|.-+-+.|+-++|+.+|++++.++.+-+.-.
T Consensus 10 ~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~ 45 (79)
T cd02679 10 EEISKALRADEWGDKEQALAHYRKGLRELEEGIAVP 45 (79)
T ss_pred HHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 344444445577899999999999999999876533
No 330
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.41 E-value=10 Score=42.16 Aligned_cols=87 Identities=22% Similarity=0.226 Sum_probs=61.2
Q ss_pred CcChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 011692 205 DESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALERE-----DIETSLSDYQKALTILERMVEPDSRHIAELN 279 (479)
Q Consensus 205 d~~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g-----~yeeAl~dy~kAL~I~~~llg~d~r~iAea~ 279 (479)
-..|++.|+.+|..|..-|.+... .....+...||.+|+... ++..|+..|.+|-.+ .+ ..+.
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~--~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-------g~---~~a~ 328 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAAT--KGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-------GN---PDAQ 328 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHh--hcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-------CC---chHH
Confidence 446888888888877654444321 112335677888888854 566677777666554 33 3789
Q ss_pred HHHHHHHHcCC---ChhHHHHHHHHHH
Q 011692 280 FRICLCLEIGS---KPQEAIPYCQKAI 303 (479)
Q Consensus 280 ~~LG~ay~~~g---~~eeAi~~~ekAL 303 (479)
|.||.+|.... ++..|..+|..|.
T Consensus 329 ~~lg~~~~~g~~~~d~~~A~~yy~~Aa 355 (552)
T KOG1550|consen 329 YLLGVLYETGTKERDYRRAFEYYSLAA 355 (552)
T ss_pred HHHHHHHHcCCccccHHHHHHHHHHHH
Confidence 99999999877 5679999999987
No 331
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=72.21 E-value=13 Score=36.76 Aligned_cols=55 Identities=13% Similarity=0.066 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 011692 251 ETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 251 eeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k 307 (479)
...|..+.+|+..+++.- ..|....+.+.||.-|...|+|++|+.+|+.++..++
T Consensus 155 ~~iI~lL~~A~~~f~~~~--~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr 209 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYG--QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYR 209 (247)
T ss_pred HHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 355777888888777654 3888899999999999999999999999999976655
No 332
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=71.95 E-value=8.1 Score=29.56 Aligned_cols=31 Identities=23% Similarity=0.070 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 235 DILSALAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 235 ~v~~~LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
+|+..|+.-+..+|+|+.|..+.+.+|++.+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP 32 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEP 32 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 5788999999999999999999999999854
No 333
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=71.92 E-value=9.3 Score=34.47 Aligned_cols=73 Identities=16% Similarity=0.128 Sum_probs=41.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH--------------------cCCChhHHHHHHHH
Q 011692 242 EVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE--------------------IGSKPQEAIPYCQK 301 (479)
Q Consensus 242 ev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~--------------------~~g~~eeAi~~~ek 301 (479)
.+......+..++..|..++...+.+-.... -.++|+.||.-.+ .--.+++|+.++++
T Consensus 24 ~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~--~~e~lvplg~~~yv~~~v~~~~kV~v~lG~g~~vE~~~~eA~~~l~~ 101 (140)
T PRK03947 24 ALQQQLEELQASINELDTAKETLEELKSKGE--GKETLVPIGAGSFVKAKVKDKDKVIVSLGAGYSAEKDLDEAIEILDK 101 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCC--CCeEEEEcCCCcEEEEEecCCCeEEEEcCCCEEEEecHHHHHHHHHH
Confidence 3344455567788888888887776653211 1245555553222 22245677777766
Q ss_pred HHHHHHHHHHHHHHH
Q 011692 302 AISVCKSRVQRLLNE 316 (479)
Q Consensus 302 AL~I~k~rl~~l~~~ 316 (479)
-++.+...+..+++.
T Consensus 102 ~~~~l~~~~~~l~~~ 116 (140)
T PRK03947 102 RKEELEKALEKLEEA 116 (140)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666655555555443
No 334
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=71.07 E-value=29 Score=36.32 Aligned_cols=33 Identities=15% Similarity=0.079 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 274 HIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 274 ~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
.-|.+||.+|..+...+++.+||.+++.|+..+
T Consensus 251 ~~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l 283 (346)
T cd09247 251 HEARSQLYLARRLKEAGHIGVAVGVLREALRNL 283 (346)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 458899999999999999999999999999853
No 335
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=70.93 E-value=1.1e+02 Score=36.09 Aligned_cols=79 Identities=18% Similarity=0.030 Sum_probs=57.6
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGD-SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLC 285 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~-~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~a 285 (479)
++++.|..+.+.+.+. .+.. ....+-++..+|.+.+-.|+|++|+.+.+.+.++.+++- .-..-+.+++..+.+
T Consensus 472 ~~~e~a~~lar~al~~---L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~--~~~l~~~~~~~~s~i 546 (894)
T COG2909 472 GDPEEAEDLARLALVQ---LPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD--VYHLALWSLLQQSEI 546 (894)
T ss_pred CCHHHHHHHHHHHHHh---cccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHH
Confidence 4566666555555433 2221 123578999999999999999999999999999998873 123345677888888
Q ss_pred HHcCC
Q 011692 286 LEIGS 290 (479)
Q Consensus 286 y~~~g 290 (479)
+..+|
T Consensus 547 l~~qG 551 (894)
T COG2909 547 LEAQG 551 (894)
T ss_pred HHHhh
Confidence 88888
No 336
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=70.80 E-value=9 Score=42.94 Aligned_cols=63 Identities=13% Similarity=-0.009 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 236 ILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 236 v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
...+|+.+.+..+-..+|-..+.++|.|.-. . ...||.+|.+|..+.+.+.||++|++|+..-
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~s-----e---pl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAINSS-----E---PLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhccc-----C---chHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 3567888888888888888888888888621 1 2679999999999999999999999999753
No 337
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.66 E-value=32 Score=35.59 Aligned_cols=87 Identities=20% Similarity=0.178 Sum_probs=59.3
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHH---------------HHHHHHHhcCC
Q 011692 206 ESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQK---------------ALTILERMVEP 270 (479)
Q Consensus 206 ~~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~k---------------AL~I~~~llg~ 270 (479)
.+++..|...|.-++... ++..++...|+++|++.|+++.|...|.. -|++..+.-..
T Consensus 147 ~e~~~~a~~~~~~al~~~-------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 147 AEDFGEAAPLLKQALQAA-------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred ccchhhHHHHHHHHHHhC-------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 456777766666666543 23467888899999999999877765543 24444443211
Q ss_pred -----------CChhHHHHHHHHHHHHHcCCChhHHHHHH
Q 011692 271 -----------DSRHIAELNFRICLCLEIGSKPQEAIPYC 299 (479)
Q Consensus 271 -----------d~r~iAea~~~LG~ay~~~g~~eeAi~~~ 299 (479)
.+|.-.++-|.|+..|...|+++.|++++
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~L 259 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHL 259 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 13333466789999999999999998877
No 338
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=70.08 E-value=30 Score=35.45 Aligned_cols=65 Identities=11% Similarity=0.134 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 233 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.+.+|..|++.+...++|+.++.++++-+.+.. ..=..|..|=.+|...|+...||.+|++.-..
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp--------~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDP--------YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc--------cchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 688999999999999999999999988877643 33367888889999999999999999875543
No 339
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=69.43 E-value=47 Score=37.23 Aligned_cols=86 Identities=13% Similarity=0.016 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhH
Q 011692 217 DVARAIAEKHWGDSMEKVDILSALAEVALE--REDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQE 294 (479)
Q Consensus 217 e~Ar~Iyek~~~~~~~~A~v~~~LGev~le--~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~ee 294 (479)
++-..+|+.. +-...--++.+||++--- ...-..++..|.+|+...+.+|...|- -.|..+|-.|.+.++|.+
T Consensus 262 ~lLw~lyd~g--hl~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~Hv---YPYty~gg~~yR~~~~~e 336 (618)
T PF05053_consen 262 DLLWLLYDMG--HLARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHV---YPYTYLGGYYYRHKRYRE 336 (618)
T ss_dssp HHHHHHHHTT--TTTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--S---HHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHhcC--chhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCcc---ccceehhhHHHHHHHHHH
Confidence 4444555543 112334566677766432 233467899999999999999986663 678889999999999999
Q ss_pred HHHHHHHHHHHHH
Q 011692 295 AIPYCQKAISVCK 307 (479)
Q Consensus 295 Ai~~~ekAL~I~k 307 (479)
|+.++-.|-.++.
T Consensus 337 A~~~Wa~aa~Vi~ 349 (618)
T PF05053_consen 337 ALRSWAEAADVIR 349 (618)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999988876643
No 340
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=68.90 E-value=17 Score=43.12 Aligned_cols=100 Identities=17% Similarity=0.045 Sum_probs=71.3
Q ss_pred CcChHHHHHHHHHHHHHHHHHhcCCcc---hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 011692 205 DESDLDLAWKMLDVARAIAEKHWGDSM---EKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFR 281 (479)
Q Consensus 205 d~~dle~Awe~Le~Ar~Iyek~~~~~~---~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~ 281 (479)
.+.|-=+|...|+.|+..|.|....=| +=-++.+.+|-..++.-.-..--..|.+||.....+.+ .+.-..=|..
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 557 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG--GVGAPLEYLG 557 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC--CCCCchHHHh
Confidence 566777899999999999988754322 23467788888887764433333677777777777754 2222345667
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 282 ICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 282 LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
-+++|..+++|++-+++|.-|+.=+
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRY 582 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 7889999999999999999988643
No 341
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.65 E-value=82 Score=32.37 Aligned_cols=97 Identities=22% Similarity=0.151 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 011692 208 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 287 (479)
Q Consensus 208 dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~ 287 (479)
.++.|...+.....|-+... -.++|++|.+|+.-. +-++.|+-|++++-+...| .-.++..++.|+.
T Consensus 152 r~d~A~~~lk~mq~ided~t--LtQLA~awv~la~gg----------ek~qdAfyifeE~s~k~~~-T~~llnG~Av~~l 218 (299)
T KOG3081|consen 152 RFDLAEKELKKMQQIDEDAT--LTQLAQAWVKLATGG----------EKIQDAFYIFEELSEKTPP-TPLLLNGQAVCHL 218 (299)
T ss_pred HHHHHHHHHHHHHccchHHH--HHHHHHHHHHHhccc----------hhhhhHHHHHHHHhcccCC-ChHHHccHHHHHH
Confidence 34445444555544433321 134777777776532 2255666677776554333 3467888999999
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011692 288 IGSKPQEAIPYCQKAISVCKSRVQRLLNEV 317 (479)
Q Consensus 288 ~~g~~eeAi~~~ekAL~I~k~rl~~l~~~l 317 (479)
.+++|++|....+.||.-.-+--+.|-|-+
T Consensus 219 ~~~~~eeAe~lL~eaL~kd~~dpetL~Nli 248 (299)
T KOG3081|consen 219 QLGRYEEAESLLEEALDKDAKDPETLANLI 248 (299)
T ss_pred HhcCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 999999999999999876544444444433
No 342
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.28 E-value=27 Score=34.11 Aligned_cols=65 Identities=17% Similarity=0.137 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011692 232 EKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 301 (479)
Q Consensus 232 ~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ek 301 (479)
.-+-.-..|+..+.+.++|++|+..++.+|..- .|.-.-+.+-.+|+.++..++++++|+..+..
T Consensus 87 Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t-----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t 151 (207)
T COG2976 87 YAVLAALELAKAEVEANNLDKAEAQLKQALAQT-----KDENLKALAALRLARVQLQQKKADAALKTLDT 151 (207)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccc-----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 345567788999999999999999999988543 34555678889999999999999999876543
No 343
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=66.82 E-value=61 Score=36.72 Aligned_cols=50 Identities=20% Similarity=0.155 Sum_probs=33.5
Q ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhc
Q 011692 69 LMEKGTNA-LKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQE 124 (479)
Q Consensus 69 L~~~G~~~-~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~ 124 (479)
|...+..| ..+|+.-+|+.||.+|+-+.-.++-+ -+++.+|..|++.|+.
T Consensus 215 lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kd------i~lLSlaTiL~RaG~s 265 (886)
T KOG4507|consen 215 LHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKD------IALLSLATVLHRAGFS 265 (886)
T ss_pred HHHHHHHHHHHcCChhhhhHHHHHHhhhCCccccc------chhhhHHHHHHHcccc
Confidence 33444333 46799999999999998764332221 3677888888887543
No 344
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.50 E-value=10 Score=40.81 Aligned_cols=79 Identities=16% Similarity=0.147 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHcCCChhHHHHHH---HHHHHHHHH
Q 011692 233 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSR-HIAELNFRICLCLEIGSKPQEAIPYC---QKAISVCKS 308 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r-~iAea~~~LG~ay~~~g~~eeAi~~~---ekAL~I~k~ 308 (479)
.|-+..++|..|-+.++.++|+.+|+++|.+...-.+-..+ .++. ..-.++.|..+. +.++.-.+.
T Consensus 21 ~A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~GIpvg~k~k~~~----------~~~~W~dAcaliQklkes~~~vr~ 90 (560)
T KOG2709|consen 21 GAYASVEQGLCYDEVNDWENALAMYEKGLNLIVEGIPVGEKMKNAR----------KSEMWKDACALIQKLKESKSSVRH 90 (560)
T ss_pred HHHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHhcCcccccccccc----------cchhhHHHHHHHHHHHHHHHHHHH
Confidence 35577889999999999999999999999998873322211 1111 112234444333 335555566
Q ss_pred HHHHHHHHHhhhc
Q 011692 309 RVQRLLNEVKSLG 321 (479)
Q Consensus 309 rl~~l~~~l~~~~ 321 (479)
||.-|++.+.+..
T Consensus 91 Rl~vL~kqkqsid 103 (560)
T KOG2709|consen 91 RLNVLKKQKQSID 103 (560)
T ss_pred HHHHHHhhhcccc
Confidence 7777766655543
No 345
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=66.46 E-value=18 Score=42.30 Aligned_cols=87 Identities=18% Similarity=0.033 Sum_probs=55.0
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++|..|+.-++ .+..|++ +.--+...=|-+..++|++++|. .+|+-.....+.+. .++--|-.||
T Consensus 23 ~qfkkal~~~~---kllkk~P----n~~~a~vLkaLsl~r~gk~~ea~----~~Le~~~~~~~~D~----~tLq~l~~~y 87 (932)
T KOG2053|consen 23 SQFKKALAKLG---KLLKKHP----NALYAKVLKALSLFRLGKGDEAL----KLLEALYGLKGTDD----LTLQFLQNVY 87 (932)
T ss_pred HHHHHHHHHHH---HHHHHCC----CcHHHHHHHHHHHHHhcCchhHH----HHHhhhccCCCCch----HHHHHHHHHH
Confidence 45555543322 3334443 33344445566788899999987 33443333333333 4556677899
Q ss_pred HcCCChhHHHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVCKS 308 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~k~ 308 (479)
..++++++|..+|++++..+..
T Consensus 88 ~d~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 88 RDLGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred HHHhhhhHHHHHHHHHHhhCCc
Confidence 9999999999999999876543
No 346
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=66.35 E-value=1.8e+02 Score=30.73 Aligned_cols=36 Identities=8% Similarity=0.021 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHH
Q 011692 274 HIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSR 309 (479)
Q Consensus 274 ~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~r 309 (479)
.-|.+||..|+.+....++.+++.+++.|+..++..
T Consensus 242 f~AlA~y~~a~~l~~~~~~g~~~a~L~~A~~~~e~a 277 (350)
T cd09244 242 YKALAHYYAAMGLLLEERRLLGKAHLKEALLLHEEA 277 (350)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888888888888888999999999998865553
No 347
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=66.16 E-value=1.9e+02 Score=30.93 Aligned_cols=49 Identities=14% Similarity=-0.063 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC-ChhHHHHHHHHHHHHHhh
Q 011692 70 MEKGTNALKESDYGEAAECFSRALEIRVSHYGEL-ALECVNAYYQYGRALLYK 121 (479)
Q Consensus 70 ~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~-~pe~A~~y~~YG~ALl~~ 121 (479)
-.+|..++-.+||+-|...|.-+..=+.. +. --..|.++-..|.+++-.
T Consensus 212 R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~---Dkaw~~~A~~~Em~alsl~~~ 261 (414)
T PF12739_consen 212 RRLADLAFMLRDYELAYSTYRLLKKDFKN---DKAWKYLAGAQEMAALSLLMQ 261 (414)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHhh---chhHHHHHhHHHHHHHHHHhc
Confidence 34677889999999999999887764321 21 234567777777777765
No 348
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=66.02 E-value=6.6 Score=39.36 Aligned_cols=57 Identities=19% Similarity=0.163 Sum_probs=50.1
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH
Q 011692 244 ALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 308 (479)
Q Consensus 244 ~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~ 308 (479)
..+.++++.|.+.|.++|.+..+. +..+|++|.-.+..|+++.|...|++.|++-..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w--------~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEW--------AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchh--------hhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 457789999999999999997665 689999999999999999999999999987654
No 349
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.80 E-value=85 Score=33.40 Aligned_cols=57 Identities=14% Similarity=0.008 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHH
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPY 298 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~ 298 (479)
..+|-.++=-..+.|-|++|...-+++|+|-+- =+-+++-++-++++.++++++.++
T Consensus 175 sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~--------D~Wa~Ha~aHVlem~~r~Keg~eF 231 (491)
T KOG2610|consen 175 SYVHGMYAFGLEECGIYDDAEKQADRALQINRF--------DCWASHAKAHVLEMNGRHKEGKEF 231 (491)
T ss_pred HHHHHHHHhhHHHhccchhHHHHHHhhccCCCc--------chHHHHHHHHHHHhcchhhhHHHH
Confidence 455555555556666666666666666655321 134455555555555555544443
No 350
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=65.42 E-value=12 Score=33.42 Aligned_cols=79 Identities=11% Similarity=0.045 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCC
Q 011692 213 WKMLDVARAIAEKHWG--DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGS 290 (479)
Q Consensus 213 we~Le~Ar~Iyek~~~--~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g 290 (479)
..+|+.+...|..... +.++...++...++... .+...|.- +..+-.| ..+|.-|-..|..++..+
T Consensus 46 ~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~---l~~~~IG---~~~A~fY~~wA~~le~~~ 113 (126)
T PF08311_consen 46 LELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKF---LYSKGIG---TKLALFYEEWAEFLEKRG 113 (126)
T ss_dssp HHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHH---HHHHTTS---TTBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHH---HHHcCcc---HHHHHHHHHHHHHHHHcC
Confidence 4578888888865433 34677788877777443 55555542 2222233 345888999999999999
Q ss_pred ChhHHHHHHHHHH
Q 011692 291 KPQEAIPYCQKAI 303 (479)
Q Consensus 291 ~~eeAi~~~ekAL 303 (479)
++++|.+.|+++|
T Consensus 114 ~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 114 NFKKADEIYQLGI 126 (126)
T ss_dssp -HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhC
Confidence 9999999999876
No 351
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.96 E-value=45 Score=36.35 Aligned_cols=98 Identities=14% Similarity=-0.026 Sum_probs=60.9
Q ss_pred ChHHHHHHHHHHHHHHHHH----hcC-------CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC------
Q 011692 207 SDLDLAWKMLDVARAIAEK----HWG-------DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVE------ 269 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek----~~~-------~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg------ 269 (479)
..|..|+.+|-.|-..|.. .++ ..++++.||+.|=.|-+ .++|..-+..|-+-+...||
T Consensus 177 e~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitc----L~DAe~RL~ra~kgf~~syGenl~Rl 252 (568)
T KOG2561|consen 177 EMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITC----LPDAEVRLVRARKGFERSYGENLSRL 252 (568)
T ss_pred HHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhccccc----CChHHHHHHHHHHhhhhhhhhhhHhh
Confidence 3566677776666555432 111 13567778887766543 34454444444444444444
Q ss_pred -----CCChh---HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH
Q 011692 270 -----PDSRH---IAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 308 (479)
Q Consensus 270 -----~d~r~---iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~ 308 (479)
+.+|. +-..|.--|.++..+|+-++|.++|+.|...+..
T Consensus 253 ~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~e 299 (568)
T KOG2561|consen 253 RSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLE 299 (568)
T ss_pred hhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 44444 3345666799999999999999999999877643
No 352
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.91 E-value=22 Score=39.33 Aligned_cols=73 Identities=12% Similarity=-0.068 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHHH
Q 011692 233 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSK-PQEAIPYCQKAISVC 306 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~-~eeAi~~~ekAL~I~ 306 (479)
..-.|+.+|-+...+|+-.+|..+|..++.= +.....++..++.+||-||..|-.++. +.++..+..+|-+-.
T Consensus 448 ~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~-e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 448 EGLKYLLKGVILRNLGDSEVAPKCFKIQVEK-ESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 3456889999999999999999999999865 444556788899999999999998888 999999998887754
No 353
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.73 E-value=26 Score=38.79 Aligned_cols=94 Identities=22% Similarity=0.181 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHHHHHHhc---CCC--ChhH-----------HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHH
Q 011692 249 DIETSLSDYQKALTILERMV---EPD--SRHI-----------AELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQR 312 (479)
Q Consensus 249 ~yeeAl~dy~kAL~I~~~ll---g~d--~r~i-----------Aea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~~ 312 (479)
++.+=+..|..-+++...+. |-+ .-.+ |.-.|.|+..|...++|.+|+..|.+|..-.+.....
T Consensus 379 rpqdl~RLYd~iiknl~e~~elPG~~~D~~l~sqle~~~~~fkafRC~~iA~sY~a~~K~~EAlALy~Ra~sylqe~~~~ 458 (593)
T KOG2460|consen 379 RPQDLERLYDSIIKNLSEIMELPGLESDKELQSQLELKKLYFKAFRCFYIAVSYQAKKKYSEALALYVRAYSYLQEVNSE 458 (593)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46666666776666655542 222 1112 2224668888888889999999998888765555444
Q ss_pred HHHHHhhhccCCCCCCCccccccccccccccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 011692 313 LLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKLEDLQQV 376 (479)
Q Consensus 313 l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Eieelk~ll~dl~~KieDlk~~ 376 (479)
+ ++...+ . -+..+.+++++|+.....++..
T Consensus 459 l----~s~~e~------------------------l------~~~~~~eli~el~k~k~s~~a~ 488 (593)
T KOG2460|consen 459 L----ESFKES------------------------L------LPLLLLELISELQKRKESLGAA 488 (593)
T ss_pred h----hchhhc------------------------c------cchHHHHHHHHHHHHHHhhhhh
Confidence 3 222110 0 1146889999999999988874
No 354
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=64.60 E-value=18 Score=32.07 Aligned_cols=80 Identities=16% Similarity=0.299 Sum_probs=47.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC--CCh----------------hHHHHHHHHHHHHHcCCChhHHHHHHH
Q 011692 239 ALAEVALEREDIETSLSDYQKALTILERMVEP--DSR----------------HIAELNFRICLCLEIGSKPQEAIPYCQ 300 (479)
Q Consensus 239 ~LGev~le~g~yeeAl~dy~kAL~I~~~llg~--d~r----------------~iAea~~~LG~ay~~~g~~eeAi~~~e 300 (479)
.+-.+.....++...+..|..+++....+-+. .+. ..-..+..||.=|.-...+++|+.+|+
T Consensus 14 ~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE~~~~eA~~~l~ 93 (129)
T cd00584 14 EIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVEKDLEEAIEFLD 93 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEEEecHHHHHHHHH
Confidence 34444455566777788888888887777541 110 001223445555555556688888877
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 011692 301 KAISVCKSRVQRLLNEVK 318 (479)
Q Consensus 301 kAL~I~k~rl~~l~~~l~ 318 (479)
+-++.++.++..|++.+.
T Consensus 94 ~r~~~l~~~~~~l~~~l~ 111 (129)
T cd00584 94 KKIEELTKQIEKLQKELA 111 (129)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777776666666655443
No 355
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=64.17 E-value=20 Score=40.77 Aligned_cols=93 Identities=20% Similarity=0.193 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcCC----cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH----hcCCCChhHHHHHHHHHHHHH
Q 011692 216 LDVARAIAEKHWGD----SMEKVDILSALAEVALEREDIETSLSDYQKALTILER----MVEPDSRHIAELNFRICLCLE 287 (479)
Q Consensus 216 Le~Ar~Iyek~~~~----~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~----llg~d~r~iAea~~~LG~ay~ 287 (479)
|+.||+||++...- ..+++.+|..-|+.-+...+|+.|+...+.|+.+=.. .+...++--+..|..| .++.
T Consensus 403 l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSl-kiWs 481 (835)
T KOG2047|consen 403 LDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSL-KIWS 481 (835)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhH-HHHH
Confidence 56778888776541 2468999999999999999999999999998865332 3334455555555444 3455
Q ss_pred cCCChhHHHHHHHHHHHHHHHH
Q 011692 288 IGSKPQEAIPYCQKAISVCKSR 309 (479)
Q Consensus 288 ~~g~~eeAi~~~ekAL~I~k~r 309 (479)
+--++++++--|+..-.++.+.
T Consensus 482 ~y~DleEs~gtfestk~vYdri 503 (835)
T KOG2047|consen 482 MYADLEESLGTFESTKAVYDRI 503 (835)
T ss_pred HHHHHHHHhccHHHHHHHHHHH
Confidence 5555555555555554444443
No 356
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.72 E-value=1.3e+02 Score=34.13 Aligned_cols=94 Identities=14% Similarity=0.128 Sum_probs=57.6
Q ss_pred ChHHHHHHHHHHHHHHHHHhcC-Cc---chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWG-DS---MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRI 282 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~-~~---~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~L 282 (479)
+...-||++ ++.|+.=.+. +. ..++++|...+.-|...-+|-++.+-+.+ |. ++..-.|.+
T Consensus 356 GC~rTA~E~---cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~-l~-----------~~PN~~yS~ 420 (665)
T KOG2422|consen 356 GCWRTALEW---CKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK-LS-----------QLPNFGYSL 420 (665)
T ss_pred CChHHHHHH---HHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc-Hh-----------hcCCchHHH
Confidence 566667755 5555543322 11 33567777777766665555444333221 11 123456778
Q ss_pred HHHHHcCCChh-----HHHHHHHHHHHHHHHHHHHHHH
Q 011692 283 CLCLEIGSKPQ-----EAIPYCQKAISVCKSRVQRLLN 315 (479)
Q Consensus 283 G~ay~~~g~~e-----eAi~~~ekAL~I~k~rl~~l~~ 315 (479)
++|+.+..+.+ .|+..+.+|+.++...|-.|-+
T Consensus 421 AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~vl~eLld 458 (665)
T KOG2422|consen 421 ALARFFLRKNEEDDRQSALNALLQALKHHPLVLSELLD 458 (665)
T ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 88887776544 6899999999999988877743
No 357
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=63.15 E-value=13 Score=24.63 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHcC----CChhHHHHHHHHHHH
Q 011692 277 ELNFRICLCLEIG----SKPQEAIPYCQKAIS 304 (479)
Q Consensus 277 ea~~~LG~ay~~~----g~~eeAi~~~ekAL~ 304 (479)
.+.++||.+|... .++.+|+.+|++|.+
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 5788999998764 378899999999864
No 358
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=62.83 E-value=35 Score=35.48 Aligned_cols=67 Identities=19% Similarity=0.120 Sum_probs=53.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHH
Q 011692 237 LSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQ 311 (479)
Q Consensus 237 ~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~ 311 (479)
++.-+.-|++.|.|.+|+...+++|.+. +..-..+.-|=..|...|+--.|+.||++--.++++.++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld--------pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelg 348 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD--------PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELG 348 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC--------hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhC
Confidence 4455677899999999999999999874 444566777888899999988999999887666655544
No 359
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=62.48 E-value=58 Score=35.48 Aligned_cols=61 Identities=11% Similarity=0.073 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 238 SALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 238 ~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
..|..+|+.+++-+-|+.+-.+++.+-..++ .-|..-+.|+..+.+|.+|...+--|.=++
T Consensus 232 tklv~CYL~~rkpdlALnh~hrsI~lnP~~f--------rnHLrqAavfR~LeRy~eAarSamia~ymy 292 (569)
T PF15015_consen 232 TKLVTCYLRMRKPDLALNHSHRSINLNPSYF--------RNHLRQAAVFRRLERYSEAARSAMIADYMY 292 (569)
T ss_pred HHHHHhhhhcCCCchHHHHHhhhhhcCcchh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466667777778888888777776655444 556677778888888888777665555444
No 360
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=62.47 E-value=26 Score=29.48 Aligned_cols=54 Identities=15% Similarity=0.070 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------H---HHhhCCCChhHHHHHHHHHHHHH
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEI------------R---VSHYGELALECVNAYYQYGRALL 119 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei------------~---~~~~Ge~~pe~A~~y~~YG~ALl 119 (479)
....+.++..++..|+|++|++.|-+.+.. + -+.+|..||-+...--.+..+||
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~~lL~ 90 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLASLLF 90 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhC
Confidence 467788999999999999999998765432 1 23468888887777777777664
No 361
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=61.89 E-value=44 Score=36.92 Aligned_cols=79 Identities=16% Similarity=0.265 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhH
Q 011692 215 MLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQE 294 (479)
Q Consensus 215 ~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~ee 294 (479)
-+.+||.||++.++........+..-++.-+.+.+..-|...+.+|+.++..+ -..+|+.-..-+.+|+..-
T Consensus 88 e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV--------dqlWyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 88 EIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV--------DQLWYKYIYMEEMLGNIAG 159 (677)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH--------HHHHHHHHHHHHHhcccHH
Confidence 35678888888877555667788889999999999999999999999988654 3667776666677777666
Q ss_pred HHHHHHH
Q 011692 295 AIPYCQK 301 (479)
Q Consensus 295 Ai~~~ek 301 (479)
|...|++
T Consensus 160 aRqifer 166 (677)
T KOG1915|consen 160 ARQIFER 166 (677)
T ss_pred HHHHHHH
Confidence 6666554
No 362
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.72 E-value=36 Score=38.70 Aligned_cols=70 Identities=21% Similarity=0.162 Sum_probs=53.5
Q ss_pred cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 011692 230 SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 230 ~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k 307 (479)
....+....+|.-+|+.+.+.|.|++.|++|-+..++. ..+-+.+-.+....++-++|+.+.++.+.++-
T Consensus 390 ~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~--------~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 390 SDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQS--------PLCQLLMLQSFLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccc--------HHHHHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence 35679999999999999999999999999997665443 35555555555567777888888877666554
No 363
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=61.52 E-value=14 Score=31.06 Aligned_cols=34 Identities=24% Similarity=0.227 Sum_probs=25.8
Q ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 011692 231 MEKVDILSALAEVALEREDIETSLSDYQKALTIL 264 (479)
Q Consensus 231 ~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~ 264 (479)
|.-.+..+.||..++..|+|++|+..+-..+..-
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3456889999999999999999998876665543
No 364
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=60.70 E-value=15 Score=39.97 Aligned_cols=86 Identities=23% Similarity=0.218 Sum_probs=52.7
Q ss_pred cChHHHHHHH--HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 011692 206 ESDLDLAWKM--LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRIC 283 (479)
Q Consensus 206 ~~dle~Awe~--Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG 283 (479)
.-.|++|+++ |+.|+.|.... .....|..||++.+.+|+++-|..+|+++=.+-.-++=-....-.+-+-+|+
T Consensus 322 ~~rFeLAl~lg~L~~A~~~a~~~-----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~ 396 (443)
T PF04053_consen 322 DHRFELALQLGNLDIALEIAKEL-----DDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLA 396 (443)
T ss_dssp HHHHHHHHHCT-HHHHHHHCCCC-----STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHH
T ss_pred HHHhHHHHhcCCHHHHHHHHHhc-----CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHH
Confidence 3578888764 67787775433 3455999999999999999999999999865544321000000123344455
Q ss_pred HHHHcCCChhHHH
Q 011692 284 LCLEIGSKPQEAI 296 (479)
Q Consensus 284 ~ay~~~g~~eeAi 296 (479)
......|++.-|.
T Consensus 397 ~~a~~~~~~n~af 409 (443)
T PF04053_consen 397 KIAEERGDINIAF 409 (443)
T ss_dssp HHHHHTT-HHHHH
T ss_pred HHHHHccCHHHHH
Confidence 5555555554443
No 365
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=60.62 E-value=14 Score=24.94 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=21.3
Q ss_pred HHHHHHHH--HHHHcCC-----ChhHHHHHHHHHHH
Q 011692 276 AELNFRIC--LCLEIGS-----KPQEAIPYCQKAIS 304 (479)
Q Consensus 276 Aea~~~LG--~ay~~~g-----~~eeAi~~~ekAL~ 304 (479)
+++.|+|| .+|.... ++.+|+.+|++|.+
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHH
Confidence 46889999 6666554 46788888888764
No 366
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=60.35 E-value=6.8 Score=34.60 Aligned_cols=45 Identities=9% Similarity=0.130 Sum_probs=25.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcC
Q 011692 242 EVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIG 289 (479)
Q Consensus 242 ev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~ 289 (479)
.+.....++..++..|+.++.....+-..+. -++++.||......
T Consensus 17 ~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~---~~~lv~lg~~~~v~ 61 (126)
T TIGR00293 17 SLQAQIAALRALIAELETAIETLEDLKGAEG---KETLVPVGAGSFVK 61 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCC---CeEEEEcCCCeEEE
Confidence 3444455577778888888888776644311 24455555444433
No 367
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=60.30 E-value=25 Score=33.37 Aligned_cols=47 Identities=15% Similarity=0.008 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhH
Q 011692 61 KTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALEC 107 (479)
Q Consensus 61 ~~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~ 107 (479)
.+..+...|-++-..|-.+|+|+.|+-.-.+||+-+...+|..||++
T Consensus 135 E~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~v 181 (181)
T PF09311_consen 135 EIPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPDV 181 (181)
T ss_dssp TS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCC
Confidence 34567788888999999999999999999999999999999999974
No 368
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=60.28 E-value=1.6e+02 Score=35.56 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=24.5
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHhhcC
Q 011692 347 KLLTDKEAEIETLSGLCGDLEKKLEDLQQVALF 379 (479)
Q Consensus 347 ~~~~~~~~Eieelk~ll~dl~~KieDlk~~~~~ 379 (479)
+....++.|++.|++++..|..++.++++....
T Consensus 401 ~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~ 433 (1074)
T KOG0250|consen 401 NKLEQLKKEVEKLEEQINSLREELNEVKEKAKE 433 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677888888888888888888887765443
No 369
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=59.21 E-value=26 Score=28.56 Aligned_cols=35 Identities=6% Similarity=-0.037 Sum_probs=27.5
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHH
Q 011692 278 LNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQR 312 (479)
Q Consensus 278 a~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~~ 312 (479)
-+..-|+-....|+|++|+.+|..||+.|...+..
T Consensus 8 ~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~ 42 (75)
T cd02684 8 ALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHY 42 (75)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence 34445566677899999999999999998877653
No 370
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=58.79 E-value=4.9 Score=43.81 Aligned_cols=107 Identities=16% Similarity=0.012 Sum_probs=69.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhcC-------CcchHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHhcCCCChhHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWG-------DSMEKVDILSALAEVALEREDIETSL-SDYQKALTILERMVEPDSRHIAEL 278 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~-------~~~~~A~v~~~LGev~le~g~yeeAl-~dy~kAL~I~~~llg~d~r~iAea 278 (479)
.|+--|+.++..|...-..... ..+..+.-|......-.+.+.+.+=. ..--++|-|++.++|+.|+.++--
T Consensus 260 ~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~d~~RmqaLiirerILgpsh~d~sYy 339 (615)
T KOG0508|consen 260 RDLLGALKYWRRAMEERESDGESILEKEPLEPVLAYGYGREVNNREELEELVEDPDEMRMQALIIRERILGPSHPDVSYY 339 (615)
T ss_pred HHHHHHHHHHHHHHHhhhhccccccccCCCCchhhhhhhhhcCCHHHHHHHhcChHHHHHHHHHHHHHHhCCCCCCceeE
Confidence 3666777777666554433111 12333433333333222322222222 223579999999999999988766
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHH
Q 011692 279 NFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRL 313 (479)
Q Consensus 279 ~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~~l 313 (479)
.-..|-+|..+++|+.-|+.+.-||.+.++.++.|
T Consensus 340 ir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~Pl 374 (615)
T KOG0508|consen 340 IRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPL 374 (615)
T ss_pred EEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCC
Confidence 66688999999999999999999999998866543
No 371
>PF15469 Sec5: Exocyst complex component Sec5
Probab=58.64 E-value=36 Score=31.93 Aligned_cols=50 Identities=22% Similarity=0.372 Sum_probs=35.6
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMV 268 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~ll 268 (479)
+.+..+..+|+.-+-+|.= |. .|- -++..|+|+.++.+|.++..++.+..
T Consensus 71 ~~l~~~l~~l~r~~flF~L-----P~------~L~-~~i~~~dy~~~i~dY~kak~l~~~~~ 120 (182)
T PF15469_consen 71 DKLRNALEFLQRNRFLFNL-----PS------NLR-ECIKKGDYDQAINDYKKAKSLFEKYK 120 (182)
T ss_pred HHHHHHHHHHHHHHHHHHh-----HH------HHH-HHHHcCcHHHHHHHHHHHHHHHHHhh
Confidence 5677777777777777631 11 111 13578999999999999999998764
No 372
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=56.79 E-value=26 Score=24.59 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHH
Q 011692 277 ELNFRICLCLEIGSKPQEAIPYCQ 300 (479)
Q Consensus 277 ea~~~LG~ay~~~g~~eeAi~~~e 300 (479)
+-++.+|..+...|+|++|+..|+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHH
Confidence 457889999999999999999965
No 373
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=56.61 E-value=14 Score=27.16 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011692 237 LSALAEVALEREDIETSLSDYQKALT 262 (479)
Q Consensus 237 ~~~LGev~le~g~yeeAl~dy~kAL~ 262 (479)
...|+..|+++|+++.|...+++.+.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 35799999999999999999888773
No 374
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=56.57 E-value=1.5e+02 Score=30.55 Aligned_cols=63 Identities=16% Similarity=0.205 Sum_probs=52.9
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcCCC----------ChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 011692 245 LEREDIETSLSDYQKALTILERMVEPD----------SRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 245 le~g~yeeAl~dy~kAL~I~~~llg~d----------~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k 307 (479)
+..-.|+.-...|.+||.......... ...+..++.+++.-+...|-.+.|+..+|-.|++.-
T Consensus 113 ~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 113 FASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred hccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 455678999999999999988876543 567888899999999999999999999999888754
No 375
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=56.47 E-value=39 Score=32.23 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC
Q 011692 250 IETSLSDYQKALTILERMVEPDS 272 (479)
Q Consensus 250 yeeAl~dy~kAL~I~~~llg~d~ 272 (479)
.-+++..+..+=+|..+.||..-
T Consensus 42 vqk~Ld~La~~Gki~~K~YGKqK 64 (201)
T KOG4603|consen 42 VQKTLDQLAQQGKIKEKMYGKQK 64 (201)
T ss_pred HHHHHHHHHHcCchhHHhcccee
Confidence 34566666666677777777654
No 376
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=56.12 E-value=1.6e+02 Score=30.72 Aligned_cols=64 Identities=8% Similarity=0.001 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011692 236 ILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 301 (479)
Q Consensus 236 v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ek 301 (479)
.-..|.-+++..++|.+|+....-.|.=++++- +.+.+...|.-=..+|....+..++...+..
T Consensus 127 Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~D--DK~~Li~vhllESKvyh~irnv~KskaSLTa 190 (421)
T COG5159 127 LECKLIYLLYKTGKYSDALALINPLLHELKKYD--DKINLITVHLLESKVYHEIRNVSKSKASLTA 190 (421)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc--CccceeehhhhhHHHHHHHHhhhhhhhHHHH
Confidence 345678889999999999999998888888774 4555667777777777766666655544433
No 377
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=54.75 E-value=23 Score=28.96 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHH
Q 011692 277 ELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQ 311 (479)
Q Consensus 277 ea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~ 311 (479)
-.+...++-....++|++|+.+|..+|+.+...+.
T Consensus 7 ~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k 41 (75)
T cd02677 7 AELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQ 41 (75)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 33445555666679999999999999998877655
No 378
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=54.36 E-value=22 Score=26.24 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=22.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 011692 70 MEKGTNALKESDYGEAAECFSRALE 94 (479)
Q Consensus 70 ~~~G~~~~~~gdyeeAve~ys~Ale 94 (479)
+.+++.|+.+||++.|.+.+.+.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5688999999999999999999885
No 379
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=53.95 E-value=3e+02 Score=29.48 Aligned_cols=31 Identities=16% Similarity=0.026 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEI 95 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei 95 (479)
....-..+.+.++..++|..|...|++++..
T Consensus 129 ~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r 159 (380)
T TIGR02710 129 EGNTEQGYARRAINAFDYLFAHARLETLLRR 159 (380)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 3445556778999999999999999999975
No 380
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=53.42 E-value=91 Score=34.30 Aligned_cols=48 Identities=17% Similarity=0.184 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhh
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKA 122 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a 122 (479)
....++-+--+|.+|+|.++.-+-+=..++ +| -..+|-++|.+|++..
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~i--------aP-S~~~~RLlGl~l~e~k 509 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKI--------AP-SPQAYRLLGLCLMENK 509 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHh--------CC-cHHHHHHHHHHHHHHh
Confidence 334445556778899999988766666666 67 6789999999999863
No 381
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=53.31 E-value=73 Score=33.67 Aligned_cols=37 Identities=19% Similarity=-0.060 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHH
Q 011692 273 RHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSR 309 (479)
Q Consensus 273 r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~r 309 (479)
..-|.+||..|..+...++|.+||.+++.|...++..
T Consensus 245 ~f~A~A~y~~a~~l~e~~k~GeaIa~L~~A~~~~k~a 281 (353)
T cd09243 245 FYLAYAYCYHGETLLAKDKCGEAIRSLQESEKLYNKA 281 (353)
T ss_pred HHHHHHHHHHHHHhHhcchHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999999999876554
No 382
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=53.26 E-value=72 Score=30.06 Aligned_cols=70 Identities=20% Similarity=0.145 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 011692 208 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 287 (479)
Q Consensus 208 dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~ 287 (479)
+++.+-.+|+--|++ .|+.......-|.+++.+++|.+|+..|+... ...+....+---|++||.
T Consensus 25 ~~~D~e~lL~ALrvL-------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~--------~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 25 DPDDAEALLDALRVL-------RPEFPELDLFDGWLHIVRGDWDDALRLLRELE--------ERAPGFPYAKALLALCLY 89 (160)
T ss_pred ChHHHHHHHHHHHHh-------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh--------ccCCCChHHHHHHHHHHH
Confidence 444455555544443 46788889999999999999999998887641 223333333344677777
Q ss_pred cCCCh
Q 011692 288 IGSKP 292 (479)
Q Consensus 288 ~~g~~ 292 (479)
.+++.
T Consensus 90 ~~~D~ 94 (160)
T PF09613_consen 90 ALGDP 94 (160)
T ss_pred HcCCh
Confidence 78875
No 383
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=51.72 E-value=1.6e+02 Score=35.31 Aligned_cols=142 Identities=20% Similarity=0.151 Sum_probs=86.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCccc
Q 011692 69 LMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDS 148 (479)
Q Consensus 69 L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de~ 148 (479)
.++-..++++.+.|+.|+..|.+..+-. +.--+=-++.|..|.+|++++....
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 530 (932)
T PRK13184 478 CLAVPDAFLAEKLYDQALIFYRRIRESF-----PGRKEGYEAQFRLGITLLEKASEQG---------------------- 530 (932)
T ss_pred cccCcHHHHhhHHHHHHHHHHHHHhhcC-----CCcccchHHHHHhhHHHHHHHHhcC----------------------
Confidence 3445567888889999998888866542 1223445789999999999742210
Q ss_pred cccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcC
Q 011692 149 VKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWG 228 (479)
Q Consensus 149 ~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~~ 228 (479)
+..+|.. |+..|++.-+
T Consensus 531 --------------------------------------------------------~~~~~~~-------~~~~~~~~~~ 547 (932)
T PRK13184 531 --------------------------------------------------------DPRDFTQ-------ALSEFSYLHG 547 (932)
T ss_pred --------------------------------------------------------ChHHHHH-------HHHHHHHhcC
Confidence 0123444 5555655432
Q ss_pred CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH----HHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 229 DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELN----FRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 229 ~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~----~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
.+..--=|.--+.||.++++|++=+..|.-||+-. +.||.|...- |+|=-++... ...|+.++--++.
T Consensus 548 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 619 (932)
T PRK13184 548 -GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRY-----SQHPEISRLRDHLVYRLHESLYKH--RREALVFMLLALW 619 (932)
T ss_pred -CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhc-----CCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 11222235566779999999999999998887654 3566665543 3333333322 2355566656666
Q ss_pred HHHH
Q 011692 305 VCKS 308 (479)
Q Consensus 305 I~k~ 308 (479)
+...
T Consensus 620 ~~~~ 623 (932)
T PRK13184 620 IAPE 623 (932)
T ss_pred hCcc
Confidence 5543
No 384
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=51.16 E-value=44 Score=30.98 Aligned_cols=58 Identities=21% Similarity=0.220 Sum_probs=44.6
Q ss_pred ChHHHHHHHH--------HHHHHHHHHhcC--CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 011692 207 SDLDLAWKML--------DVARAIAEKHWG--DSMEKVDILSALAEVALEREDIETSLSDYQKALTIL 264 (479)
Q Consensus 207 ~dle~Awe~L--------e~Ar~Iyek~~~--~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~ 264 (479)
..|..||-+. ..-..|++.... +..+.-+|.+-|+--+...++|+.++.+...+|++.
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 6788999764 445666666552 334567888899999999999999999998888774
No 385
>PRK10941 hypothetical protein; Provisional
Probab=50.97 E-value=1e+02 Score=31.28 Aligned_cols=66 Identities=15% Similarity=0.111 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 233 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
+...+.+|=.+|+..++|+.|+.+.+..|.+. |+++ .-+--.|++|..++.+..|+.-++.-|+.|
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~-----P~dp---~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQFD-----PEDP---YEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 46788899999999999999999988888764 3443 334458999999999999988777666554
No 386
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=50.64 E-value=1.2e+02 Score=27.66 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 011692 350 TDKEAEIETLSGLCGDLEKKLEDLQQV 376 (479)
Q Consensus 350 ~~~~~Eieelk~ll~dl~~KieDlk~~ 376 (479)
...++|++||--||.|+..|+.-.|..
T Consensus 80 ~~~q~EldDLL~ll~Dle~K~~kyk~r 106 (136)
T PF04871_consen 80 KEAQSELDDLLVLLGDLEEKRKKYKER 106 (136)
T ss_pred HhhhhhHHHHHHHHHhHHHHHHHHHHH
Confidence 467889999999999999999999875
No 387
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=50.33 E-value=1.9e+02 Score=28.37 Aligned_cols=71 Identities=17% Similarity=0.110 Sum_probs=41.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
.++..|...+.+|-. .+..+....+|.+++....-.++--+..++++...+...-+ -+++.|+|..-|
T Consensus 87 ~~l~~a~r~~~~aC~---------~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~---~~~aCf~LS~m~ 154 (248)
T KOG4014|consen 87 ASLSKAIRPMKIACD---------ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE---DGEACFLLSTMY 154 (248)
T ss_pred cCHHHHHHHHHHHhc---------cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC---CchHHHHHHHHH
Confidence 567777777766653 23456666778877766655555555555555554443222 256677777666
Q ss_pred HcC
Q 011692 287 EIG 289 (479)
Q Consensus 287 ~~~ 289 (479)
...
T Consensus 155 ~~g 157 (248)
T KOG4014|consen 155 MGG 157 (248)
T ss_pred hcc
Confidence 544
No 388
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=49.67 E-value=44 Score=36.66 Aligned_cols=70 Identities=21% Similarity=0.271 Sum_probs=51.3
Q ss_pred HHHHHHHHH--HHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHH------------
Q 011692 234 VDILSALAE--VALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYC------------ 299 (479)
Q Consensus 234 A~v~~~LGe--v~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~------------ 299 (479)
+++-+.|++ -....|+|..+.-+-.-..+|.+. ..+|--||+|+....+|.+|..++
T Consensus 460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS---------~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~~~~ds 530 (549)
T PF07079_consen 460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPS---------PQAYRLLGLCLMENKRYQEAWEYLQKLPPNERMRDS 530 (549)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCc---------HHHHHHHHHHHHHHhhHHHHHHHHHhCCCchhhHHH
Confidence 344444543 456788888887777666666542 378889999999999999999886
Q ss_pred --HHHHHHHHHHHHH
Q 011692 300 --QKAISVCKSRVQR 312 (479)
Q Consensus 300 --ekAL~I~k~rl~~ 312 (479)
+||+.+|.+++.+
T Consensus 531 kvqKAl~lCqKh~~k 545 (549)
T PF07079_consen 531 KVQKALALCQKHLPK 545 (549)
T ss_pred HHHHHHHHHHHhhhh
Confidence 5677777777653
No 389
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=49.09 E-value=1.4e+02 Score=34.59 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=14.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh
Q 011692 352 KEAEIETLSGLCGDLEKKLEDLQQV 376 (479)
Q Consensus 352 ~~~Eieelk~ll~dl~~KieDlk~~ 376 (479)
+...++++++-=..|..|++.+.+.
T Consensus 598 LaeR~e~a~d~Qe~L~~R~~~vl~~ 622 (717)
T PF10168_consen 598 LAERYEEAKDKQEKLMKRVDRVLQL 622 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666666666666666655444
No 390
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=49.06 E-value=19 Score=37.98 Aligned_cols=63 Identities=22% Similarity=0.189 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
-.++.+++.+.+..++|..|+..-..+|. ..|.-+.+||+.+.+|....++++|++.+..|..
T Consensus 275 ~~~~~n~~~~~lk~~~~~~a~~~~~~~~~--------~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~ 337 (372)
T KOG0546|consen 275 FSIRRNLAAVGLKVKGRGGARFRTNEALR--------DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQ 337 (372)
T ss_pred cccccchHHhcccccCCCcceeccccccc--------cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhc
Confidence 45777899999999999999877666665 5566789999999999999999999888766653
No 391
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=48.96 E-value=79 Score=29.03 Aligned_cols=53 Identities=25% Similarity=0.204 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEA 126 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~es 126 (479)
++.++.++..++..|+|.-|+.+...++.. .|++..+......+|..+|....
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~a--------dp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFA--------DPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHHHhcc
Confidence 578889999999999999999999998886 68888999999999999886543
No 392
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=48.80 E-value=31 Score=31.98 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=15.9
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCC
Q 011692 246 EREDIETSLSDYQKALTILERMVEPD 271 (479)
Q Consensus 246 e~g~yeeAl~dy~kAL~I~~~llg~d 271 (479)
..+....++..|+.|++..+.+-+.+
T Consensus 28 ~i~~l~~~~~e~~~~~~tl~~lk~~~ 53 (145)
T COG1730 28 QIAALNAAISELQTAIETLENLKGAG 53 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33445567777777777776654433
No 393
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=48.68 E-value=58 Score=35.22 Aligned_cols=35 Identities=9% Similarity=0.013 Sum_probs=28.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHH
Q 011692 279 NFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRL 313 (479)
Q Consensus 279 ~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~~l 313 (479)
+-+++..|...|+|+.|--+|+..+..+.+.+...
T Consensus 9 ~ak~ar~~al~G~~d~~~~~~~g~~~~~~r~l~s~ 43 (491)
T KOG0738|consen 9 NAKLAREYALLGNYDSAGIYYRGLLYLMNRYLVST 43 (491)
T ss_pred HHHHHHHHHHhcCcchhHHHHHhHHHHHHHHHhcc
Confidence 34677888899999999999999998877776543
No 394
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=48.58 E-value=73 Score=34.09 Aligned_cols=71 Identities=20% Similarity=0.216 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCCh-------hHHHHHHHHHHHHHHH
Q 011692 236 ILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKP-------QEAIPYCQKAISVCKS 308 (479)
Q Consensus 236 v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~-------eeAi~~~ekAL~I~k~ 308 (479)
..-.||+.++-+++|+-|...|+-+.+=+.. ..-...+|-++.-+|+|+.+.+.. ++...+++.|+..+..
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~--Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~ 287 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKN--DKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK 287 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhh--chhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence 4567999999999999999999877663321 233677899999999999988843 3666777777777666
No 395
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=48.53 E-value=2.3e+02 Score=27.87 Aligned_cols=51 Identities=24% Similarity=0.379 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011692 250 IETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLNEVKSLGE 322 (479)
Q Consensus 250 yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~~l~~~l~~~~~ 322 (479)
-...+.+|+.+|...... .++..-..-|++.|.-+...+..++.+|.....
T Consensus 16 ~~~~i~~l~~al~~L~~~----------------------~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~ 66 (240)
T PF12795_consen 16 QKALIQDLQQALSFLDEI----------------------KKQKKRAAEYQKQIDQAPKEIRELQKELEALKS 66 (240)
T ss_pred hHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhc
Confidence 345566777777766553 345677788999999999999999999888754
No 396
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=48.00 E-value=1.2e+02 Score=25.49 Aligned_cols=66 Identities=11% Similarity=0.109 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 235 DILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 235 ~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.-+.--|.=.....+..+||..++++|+..... ..+ =.++-.|..+|+..|+|.+.+.+--+=++|
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~---~~r--f~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDR---EDR--FRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhcCCh---HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444544557778889999999988775431 223 355667888999999999998876555544
No 397
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=47.60 E-value=1.1e+02 Score=35.58 Aligned_cols=55 Identities=22% Similarity=0.296 Sum_probs=39.6
Q ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------HHHHhcCCCChh---HHHHHHHHHHH
Q 011692 231 MEKVDILSALAEVALEREDIETSLSDYQKALT------------------ILERMVEPDSRH---IAELNFRICLC 285 (479)
Q Consensus 231 ~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~------------------I~~~llg~d~r~---iAea~~~LG~a 285 (479)
..+-+++.++|+.+.++-.++.|..+|.++-. .+-..++++|+. +|+.+-..|+|
T Consensus 793 ~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC 868 (1189)
T KOG2041|consen 793 EGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMC 868 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchH
Confidence 45678999999999999999999999987632 222346667644 56666666654
No 398
>PF12854 PPR_1: PPR repeat
Probab=47.04 E-value=33 Score=23.31 Aligned_cols=26 Identities=8% Similarity=0.156 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011692 234 VDILSALAEVALEREDIETSLSDYQK 259 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~k 259 (479)
.-+|+.|=..++..|++++|+..|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45899999999999999999998874
No 399
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=46.97 E-value=4.6e+02 Score=32.23 Aligned_cols=26 Identities=19% Similarity=0.137 Sum_probs=16.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 240 LAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 240 LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
-|..|...|+.++|+..|+.|+..++
T Consensus 958 Aal~Ye~~GklekAl~a~~~~~dWr~ 983 (1265)
T KOG1920|consen 958 AALMYERCGKLEKALKAYKECGDWRE 983 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHHhccHHH
Confidence 34556666777777777766555444
No 400
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=46.73 E-value=2e+02 Score=31.70 Aligned_cols=11 Identities=18% Similarity=0.404 Sum_probs=7.6
Q ss_pred ccccccccccC
Q 011692 443 VGRGVKRVSMS 453 (479)
Q Consensus 443 vg~g~kr~~~~ 453 (479)
++.|+.+....
T Consensus 191 ~~~~~~~~~f~ 201 (475)
T PRK13729 191 VPNRIQRKTFT 201 (475)
T ss_pred CCCceeEEEee
Confidence 57777777754
No 401
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=46.59 E-value=82 Score=32.67 Aligned_cols=65 Identities=23% Similarity=0.252 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccccccccccccccccchhhhHHHHHHHHHHhhHHHHHHHHH
Q 011692 292 PQEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKLE 371 (479)
Q Consensus 292 ~eeAi~~~ekAL~I~k~rl~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Eieelk~ll~dl~~Kie 371 (479)
|..+-..-+.|++. -..|+.+..+++.+.. .+....+.+++..|.+.+..|.|++.+|.
T Consensus 40 yQ~~EQAr~~A~~f-A~~ld~~~~kl~~Ms~--------------------~ql~~~~~k~~~si~~q~~~i~~l~~~i~ 98 (301)
T PF06120_consen 40 YQNAEQARQEAIEF-ADSLDELKEKLKEMSS--------------------TQLRANIAKAEESIAAQKRAIEDLQKKID 98 (301)
T ss_pred HHHHHHHHHHHHHH-HHhhHHHHHHHHhcCH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666664 5667778777777643 11122344556666666666666666666
Q ss_pred HHHHhh
Q 011692 372 DLQQVA 377 (479)
Q Consensus 372 Dlk~~~ 377 (479)
+|+..+
T Consensus 99 ~l~~~i 104 (301)
T PF06120_consen 99 SLKDQI 104 (301)
T ss_pred HHHHHH
Confidence 666443
No 402
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=46.52 E-value=44 Score=20.97 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH
Q 011692 80 SDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRAL 118 (479)
Q Consensus 80 gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~AL 118 (479)
|+++.|..+|++++.. .|.+..++..|..-.
T Consensus 1 ~~~~~~r~i~e~~l~~--------~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEK--------FPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHH--------CCCChHHHHHHHHHH
Confidence 5788999999999986 567777887776543
No 403
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=46.29 E-value=3.2e+02 Score=27.43 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011692 292 PQEAIPYCQKAISVCKSRVQRLLNEVKSL 320 (479)
Q Consensus 292 ~eeAi~~~ekAL~I~k~rl~~l~~~l~~~ 320 (479)
-...+..++..+.+.+.++..|+.+|..+
T Consensus 87 ~~~e~~aL~~E~~~ak~r~~~le~el~~l 115 (239)
T COG1579 87 DERELRALNIEIQIAKERINSLEDELAEL 115 (239)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667778888888888888888777655
No 404
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=45.67 E-value=52 Score=34.56 Aligned_cols=48 Identities=17% Similarity=0.115 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHH
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALL 119 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl 119 (479)
.+|..-+..+...+.+|+.++|..+|..|+.+ +|.+.+++..||.-+-
T Consensus 114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E 161 (472)
T KOG3824|consen 114 KEAILALKAAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFRE 161 (472)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHH
Confidence 44555556667889999999999999999998 7888888888887654
No 405
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=45.45 E-value=2e+02 Score=24.89 Aligned_cols=60 Identities=20% Similarity=0.303 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccccccccccccccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Q 011692 293 QEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKLED 372 (479)
Q Consensus 293 eeAi~~~ekAL~I~k~rl~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Eieelk~ll~dl~~KieD 372 (479)
.+.+...+..+.-...|+..++.+++.+++ .+.+..++-+|.++++=+..|..+|.-
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt-----------------------~~dv~~L~l~l~el~G~~~~l~~~l~~ 90 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPT-----------------------RDDVHDLQLELAELRGELKELSARLQG 90 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------------------HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 355566666777778999999999988854 234567788888888888888888876
Q ss_pred HHH
Q 011692 373 LQQ 375 (479)
Q Consensus 373 lk~ 375 (479)
+..
T Consensus 91 v~~ 93 (106)
T PF10805_consen 91 VSH 93 (106)
T ss_pred HHH
Confidence 655
No 406
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=44.96 E-value=3.6e+02 Score=27.65 Aligned_cols=35 Identities=20% Similarity=0.108 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 011692 233 KVDILSALAEVALEREDIETSLSDYQKALTILERM 267 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~l 267 (479)
.|-+|..+|..+.+.++|-+|+..++.|+...+..
T Consensus 250 ~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~~~ 284 (345)
T cd09034 250 KALAYYYHGLKLDEANKIGEAIARLQAALELLKES 284 (345)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888888888888888776654
No 407
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.63 E-value=1.3e+02 Score=31.96 Aligned_cols=79 Identities=16% Similarity=0.039 Sum_probs=53.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHH-------------------------hcCCCChhHHHHHHHHHHHHHcCCChhH
Q 011692 240 LAEVALEREDIETSLSDYQKALTILER-------------------------MVEPDSRHIAELNFRICLCLEIGSKPQE 294 (479)
Q Consensus 240 LGev~le~g~yeeAl~dy~kAL~I~~~-------------------------llg~d~r~iAea~~~LG~ay~~~g~~ee 294 (479)
-|.+++-.++|.+....|..+=.-.++ -+++........|+.+|+-|....+++.
T Consensus 64 ~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~nD~~~ 143 (449)
T COG3014 64 NGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKALNYMLLNDSAK 143 (449)
T ss_pred hhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHHHHHHhhHHHhcchhh
Confidence 366666666666666665544333222 1344455667889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 011692 295 AIPYCQKAISVCKSRVQRLLNEVK 318 (479)
Q Consensus 295 Ai~~~ekAL~I~k~rl~~l~~~l~ 318 (479)
|+--|.+|+...++--+.-.+++.
T Consensus 144 ArVEfnRan~rQ~~AKe~~~~ei~ 167 (449)
T COG3014 144 ARVEFNRANERQRRAKEFYYEEVQ 167 (449)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998877664444433333
No 408
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=43.83 E-value=45 Score=37.29 Aligned_cols=83 Identities=17% Similarity=0.129 Sum_probs=59.0
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHH
Q 011692 219 ARAIAEKHWGDSMEKVDILSALAEVALER---EDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEA 295 (479)
Q Consensus 219 Ar~Iyek~~~~~~~~A~v~~~LGev~le~---g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeA 295 (479)
++..|.+.....+..+.+|.+-+.+++.+ ++.-.|+.+...||+|-..+ -.+||.|+.++..++++.+|
T Consensus 393 ~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~--------~kah~~la~aL~el~r~~ea 464 (758)
T KOG1310|consen 393 AISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI--------QKAHFRLARALNELTRYLEA 464 (758)
T ss_pred HHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH--------HHHHHHHHHHHHHHhhHHHh
Confidence 34444444444455677777878887765 45566777777777775444 48999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 011692 296 IPYCQKAISVCKSR 309 (479)
Q Consensus 296 i~~~ekAL~I~k~r 309 (479)
+.+...+.-.+..-
T Consensus 465 l~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 465 LSCHWALQMSFPTD 478 (758)
T ss_pred hhhHHHHhhcCchh
Confidence 99887666555533
No 409
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=43.70 E-value=1e+02 Score=24.63 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHH
Q 011692 349 LTDKEAEIETLSGLCGDLEKKLEDLQ 374 (479)
Q Consensus 349 ~~~~~~Eieelk~ll~dl~~KieDlk 374 (479)
+..-.++|..|+..|.-|..||.++.
T Consensus 27 v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 27 VTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555667777777777777776665
No 410
>PRK10869 recombination and repair protein; Provisional
Probab=43.41 E-value=2.8e+02 Score=31.03 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHH
Q 011692 350 TDKEAEIETLSGLCGDLEKKLEDLQQ 375 (479)
Q Consensus 350 ~~~~~Eieelk~ll~dl~~KieDlk~ 375 (479)
..++++++.++.-+-++-.+|...+.
T Consensus 344 ~~Le~e~~~l~~~l~~~A~~LS~~R~ 369 (553)
T PRK10869 344 ETLALAVEKHHQQALETAQKLHQSRQ 369 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554443
No 411
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=43.39 E-value=3.8e+02 Score=27.45 Aligned_cols=80 Identities=18% Similarity=0.241 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCCh
Q 011692 213 WKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKP 292 (479)
Q Consensus 213 we~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~ 292 (479)
.+....|..++.=-......+.++...||.++.+.|..... |-..+...+..|
T Consensus 78 re~~~~A~~L~~WG~~edddl~DIsDklgvLl~e~ge~e~~---~a~~~d~yR~~L------------------------ 130 (271)
T PF13805_consen 78 RERKAAAKQLSEWGEQEDDDLSDISDKLGVLLYEIGELEDQ---YADRLDQYRIHL------------------------ 130 (271)
T ss_dssp HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH------------------------
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH------------------------
Confidence 33344444443222223457888888888888887753322 222233332222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011692 293 QEAIPYCQKAISVCKSRVQRLLNEVKSL 320 (479)
Q Consensus 293 eeAi~~~ekAL~I~k~rl~~l~~~l~~~ 320 (479)
++|.-.+.+|.-.+.+-..|..+|..+
T Consensus 131 -K~IR~~E~sl~p~R~~r~~l~d~I~kL 157 (271)
T PF13805_consen 131 -KSIRNREESLQPSRDRRRKLQDEIAKL 157 (271)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhHHHHHhHHHHHHHHHH
Confidence 455555566665666656666655554
No 412
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=42.52 E-value=1.6e+02 Score=28.09 Aligned_cols=70 Identities=16% Similarity=0.269 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccccccccccccccccchhhhHHHHHHHHHHhhHHHHHHHHH
Q 011692 292 PQEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKLE 371 (479)
Q Consensus 292 ~eeAi~~~ekAL~I~k~rl~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Eieelk~ll~dl~~Kie 371 (479)
..+-++.++.-++.+..+|..|+..++.... +.+ -=-.-.-+.||+|+...|.-|+++|.
T Consensus 83 ~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad-----------~vv---------sYqll~hr~e~ee~~~~l~~le~~~~ 142 (175)
T PRK13182 83 SSVDFEQLEAQLNTITRRLDELERQLQQKAD-----------DVV---------SYQLLQHRREMEEMLERLQKLEARLK 142 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hhh---------hHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4466677888888888888888887776532 211 00124557899999999999999999
Q ss_pred HHHHhhcCCh
Q 011692 372 DLQQVALFPK 381 (479)
Q Consensus 372 Dlk~~~~~p~ 381 (479)
.++.....|.
T Consensus 143 ~~e~~~~~~~ 152 (175)
T PRK13182 143 KLEPIYITPD 152 (175)
T ss_pred HHHhhccCCc
Confidence 9887655553
No 413
>PRK10869 recombination and repair protein; Provisional
Probab=42.51 E-value=2.4e+02 Score=31.62 Aligned_cols=39 Identities=8% Similarity=0.043 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 011692 277 ELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLN 315 (479)
Q Consensus 277 ea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~~l~~ 315 (479)
.+++.|.-+.....+|-+.+.+-..-|+-++.||..|..
T Consensus 272 ~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~ 310 (553)
T PRK10869 272 EALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQIS 310 (553)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Confidence 455555555555554444444444445555666665543
No 414
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.23 E-value=75 Score=36.08 Aligned_cols=88 Identities=18% Similarity=0.118 Sum_probs=55.7
Q ss_pred cCcChHHHHHHH--HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 011692 204 EDESDLDLAWKM--LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFR 281 (479)
Q Consensus 204 ed~~dle~Awe~--Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~ 281 (479)
+++..|++|+.+ |++|+.|..+... ..-|..||+..+..++|.-|.++|.+|..+---++-.....-++-+..
T Consensus 639 D~d~rFelal~lgrl~iA~~la~e~~s-----~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 639 DPDQRFELALKLGRLDIAFDLAVEANS-----EVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred ChhhhhhhhhhcCcHHHHHHHHHhhcc-----hHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHH
Confidence 344567776654 6777777655432 345889999999999999999999999776544433222222344444
Q ss_pred HHHHHHcCCChhHHH
Q 011692 282 ICLCLEIGSKPQEAI 296 (479)
Q Consensus 282 LG~ay~~~g~~eeAi 296 (479)
||..-..+|+++-|.
T Consensus 714 la~~~~~~g~~N~AF 728 (794)
T KOG0276|consen 714 LASLAKKQGKNNLAF 728 (794)
T ss_pred HHHHHHhhcccchHH
Confidence 554444444444443
No 415
>PF12063 DUF3543: Domain of unknown function (DUF3543); InterPro: IPR022708 This domain belonging to serine/threonine-protein kinases is functionally uncharacterised. This domain is found in eukaryotes. It is typically between 217 to 291 amino acids in length and is found associated with PF00069 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0004674 protein serine/threonine kinase activity
Probab=42.04 E-value=3.7e+02 Score=26.84 Aligned_cols=103 Identities=18% Similarity=0.197 Sum_probs=59.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHHH---HHhcCCCChhHHH--------HHHHHH-------HHHHcCC-ChhHHHHHHHHHH
Q 011692 243 VALEREDIETSLSDYQKALTIL---ERMVEPDSRHIAE--------LNFRIC-------LCLEIGS-KPQEAIPYCQKAI 303 (479)
Q Consensus 243 v~le~g~yeeAl~dy~kAL~I~---~~llg~d~r~iAe--------a~~~LG-------~ay~~~g-~~eeAi~~~ekAL 303 (479)
|.+-+++|.+.+.-.+.+-.-. ...++.+|+.+.. ..|.-+ -+-+..| ++......|.+|+
T Consensus 114 Vqwlr~rfneclekae~lr~~l~~~~~~l~~~~~~~~~~~~itAekLiYdrALemsr~AA~~El~g~~~~~ce~~Y~tA~ 193 (238)
T PF12063_consen 114 VQWLRERFNECLEKAEFLRLRLQEAQKQLPDDHPSMPSSSGITAEKLIYDRALEMSRTAAVDELFGENLEGCEQRYETAI 193 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCccccccccCccccCHHHHHHHHHHHHHHHHHHHHHhCcCHhHHHHHHHHHH
Confidence 4555666665544333222222 2335655543333 344433 3446677 8999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCccccccccccccccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHH
Q 011692 304 SVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKLEDLQQ 375 (479)
Q Consensus 304 ~I~k~rl~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Eieelk~ll~dl~~KieDlk~ 375 (479)
-+++..++.. .... ....+ ...+.-|+..+.=|+.||.-|+.
T Consensus 194 ~lLe~Ll~~~-----~~~~------~~~~~-------------------~~Dr~~i~k~i~sI~~RL~~Lr~ 235 (238)
T PF12063_consen 194 WLLEALLDDD-----DLEE------ENPLD-------------------EEDREIIKKYIDSIENRLSALRK 235 (238)
T ss_pred HHHHHHHhHh-----hccc------cCCCC-------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888765 0000 00001 12344577788888888887765
No 416
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=42.02 E-value=2e+02 Score=23.83 Aligned_cols=28 Identities=14% Similarity=0.144 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011692 295 AIPYCQKAISVCKSRVQRLLNEVKSLGE 322 (479)
Q Consensus 295 Ai~~~ekAL~I~k~rl~~l~~~l~~~~~ 322 (479)
-..-|..++.-++.+|.+.+..|..+++
T Consensus 22 ~~kd~~~~~~~lk~Klq~ar~~i~~lpg 49 (83)
T PF07544_consen 22 SSKDLDTATGSLKHKLQKARAAIRELPG 49 (83)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3456777888889999999998888764
No 417
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=41.72 E-value=1.6e+02 Score=27.39 Aligned_cols=59 Identities=29% Similarity=0.311 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccccccccccccccccchhhhHHHHHHHHHHhhHHHHHHHHHHHH
Q 011692 295 AIPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKLEDLQ 374 (479)
Q Consensus 295 Ai~~~ekAL~I~k~rl~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Eieelk~ll~dl~~KieDlk 374 (479)
-+.-++.-+..++..+..|+.+|..+... .+..++...|..|+.=+..|+.||+.|+
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL~~L~~~-----------------------~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAELASLSSE-----------------------PTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555431 1235788899999999999999999999
Q ss_pred Hh
Q 011692 375 QV 376 (479)
Q Consensus 375 ~~ 376 (479)
..
T Consensus 137 ~~ 138 (169)
T PF07106_consen 137 SG 138 (169)
T ss_pred hC
Confidence 74
No 418
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=41.28 E-value=61 Score=27.98 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 011692 292 PQEAIPYCQKAISVCKSRVQRLL 314 (479)
Q Consensus 292 ~eeAi~~~ekAL~I~k~rl~~l~ 314 (479)
+++|++++++=+..++..+..++
T Consensus 75 ~~eA~~~l~~r~~~l~~~~~~l~ 97 (120)
T PF02996_consen 75 LEEAIEFLKKRIKELEEQLEKLE 97 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46676666555555444444443
No 419
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=41.20 E-value=1.4e+02 Score=26.47 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHH
Q 011692 350 TDKEAEIETLSGLCGDLEKKLEDLQQ 375 (479)
Q Consensus 350 ~~~~~Eieelk~ll~dl~~KieDlk~ 375 (479)
+..+.|++-||+-|-||.+|..-|++
T Consensus 63 fAVREEVe~Lk~qI~eL~er~~~Le~ 88 (123)
T KOG4797|consen 63 FAVREEVEVLKEQIRELEERNSALER 88 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888899999999999888876
No 420
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=41.11 E-value=1.9e+02 Score=30.81 Aligned_cols=33 Identities=30% Similarity=0.386 Sum_probs=24.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHH
Q 011692 75 NALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYG 115 (479)
Q Consensus 75 ~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG 115 (479)
+.+..++-.+=+..-..||+| +|+||.+|.+++
T Consensus 193 ~AWRERnp~~RI~~A~~ALeI--------N~eCA~AyvLLA 225 (556)
T KOG3807|consen 193 KAWRERNPPARIKAAYQALEI--------NNECATAYVLLA 225 (556)
T ss_pred HHHHhcCcHHHHHHHHHHHhc--------CchhhhHHHhhh
Confidence 344566667777777788888 799999998753
No 421
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=41.09 E-value=99 Score=33.79 Aligned_cols=67 Identities=12% Similarity=0.210 Sum_probs=48.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhc--C----CCC----hhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 239 ALAEVALEREDIETSLSDYQKALTILERMV--E----PDS----RHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 239 ~LGev~le~g~yeeAl~dy~kAL~I~~~ll--g----~d~----r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.=|.-++.+++|..|+.-|+.||+++.+-. + +.. ..-..+--+|.+||..+++.+-|+.|-.++|..
T Consensus 181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l 257 (569)
T PF15015_consen 181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL 257 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc
Confidence 334556678888888888888888887642 1 122 222345568999999999999999998887753
No 422
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=41.05 E-value=24 Score=29.63 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 011692 235 DILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLL 314 (479)
Q Consensus 235 ~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~~l~ 314 (479)
.....|..+......+..-+..+.-++.-...+-+ + ..+|..+|.||... ..++++...+.-++.++..|..|+
T Consensus 9 ~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~-~----~~~y~~vG~~fv~~-~~~~~~~~L~~~~~~~~~~i~~l~ 82 (106)
T PF01920_consen 9 ELNQQLQQLEQQIQQLERQLRELELTLEELEKLDD-D----RKVYKSVGKMFVKQ-DKEEAIEELEERIEKLEKEIKKLE 82 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSST-T-----EEEEEETTEEEEE-EHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-c----chhHHHHhHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666777777777777766532 2 34566677776555 456666666555544444444443
No 423
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.02 E-value=1.5e+02 Score=30.14 Aligned_cols=61 Identities=15% Similarity=0.265 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccccccccccccccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Q 011692 293 QEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKLED 372 (479)
Q Consensus 293 eeAi~~~ekAL~I~k~rl~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Eieelk~ll~dl~~KieD 372 (479)
+..+...++...=++..|+.|.+.+..... .....+++|..++.-|..++.+|.+
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~-------------------------k~~~~~~~i~~~~~eik~l~~eI~~ 91 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQS-------------------------KIDELQKEIDQSKAEIKKLQKEIAE 91 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666555422 2345566777777777777777777
Q ss_pred HHHhhc
Q 011692 373 LQQVAL 378 (479)
Q Consensus 373 lk~~~~ 378 (479)
++.-+.
T Consensus 92 ~~~~I~ 97 (265)
T COG3883 92 LKENIV 97 (265)
T ss_pred HHHHHH
Confidence 776544
No 424
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=41.01 E-value=1e+02 Score=27.09 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChh
Q 011692 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALE 106 (479)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe 106 (479)
.+.+...+.++..++..|+|+.+...+.+|..|..+...-.+++
T Consensus 26 yd~ai~~l~~a~~a~~~~~~~~~~~~l~ka~~Ii~~L~~~Ld~e 69 (122)
T PF02561_consen 26 YDGAIEFLKQAKEAIEQGDIEEKNEALQKAQDIITELQSSLDFE 69 (122)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 45688888999999999999999999999999999887665554
No 425
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.89 E-value=1.9e+02 Score=30.80 Aligned_cols=33 Identities=15% Similarity=-0.050 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 233 KVDILSALAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
..-+|.-+|..|++..+++.|+..|.+++.-++
T Consensus 124 ~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~ 156 (449)
T COG3014 124 GVLINYYKALNYMLLNDSAKARVEFNRANERQR 156 (449)
T ss_pred HHHHHHHHHhhHHHhcchhhhHHHHHHHHHHHH
Confidence 456788899999999999999999999988775
No 426
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=40.67 E-value=3.1e+02 Score=31.20 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHhhH--------HHHHHHHHHHHHhhcCChhHHHHHHHhhhhccCCC
Q 011692 350 TDKEAEIETLSGLC--------GDLEKKLEDLQQVALFPKSILSEILGMASAKAKGD 398 (479)
Q Consensus 350 ~~~~~Eieelk~ll--------~dl~~KieDlk~~~~~p~s~~~e~~~~~~~~~~g~ 398 (479)
..+++.+.++...| .+++.|+.+|+.. ...|+..+..+|+||
T Consensus 570 ~~l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~~-------~~pi~~r~~~~~~~~ 619 (653)
T PTZ00009 570 ATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVESV-------CNPIMTKMYQAAGGG 619 (653)
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH-------HHHHHHHHHhhccCC
Confidence 34445555555444 5667777777765 445666666666554
No 427
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=40.58 E-value=2.7e+02 Score=24.90 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=16.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHh
Q 011692 354 AEIETLSGLCGDLEKKLEDLQQV 376 (479)
Q Consensus 354 ~Eieelk~ll~dl~~KieDlk~~ 376 (479)
.+-..|+.=|.+++.||+||...
T Consensus 98 ~qk~~le~e~~~~~~r~~dL~~Q 120 (132)
T PF07926_consen 98 EQKEQLEKELSELEQRIEDLNEQ 120 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455777778888899998864
No 428
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=40.29 E-value=2.4e+02 Score=29.87 Aligned_cols=62 Identities=15% Similarity=0.123 Sum_probs=44.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCC--ChhHHHHHHHHHHHHH
Q 011692 239 ALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGS--KPQEAIPYCQKAISVC 306 (479)
Q Consensus 239 ~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g--~~eeAi~~~ekAL~I~ 306 (479)
..+.-.+..++|..|...|...+.- ++..-. -..+..|+.+|..-. +|.+|.+++++.+.-.
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~r----l~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~ 199 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRR----LPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD 199 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh----CCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 4444555778899999988887652 332222 577888999998766 5789999999877654
No 429
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=39.44 E-value=1.3e+02 Score=33.88 Aligned_cols=50 Identities=22% Similarity=0.292 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (479)
+.++..+..|+-.+.......|+..|++++.- .|....+|-++..+|+..
T Consensus 372 e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkR 421 (758)
T KOG1310|consen 372 ENIEKFKTEGNDGLYESIVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKR 421 (758)
T ss_pred HHHHHHHhhccchhhhHHHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhh
Confidence 45777788898889999999999999999986 688888999999888865
No 430
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=39.38 E-value=26 Score=37.60 Aligned_cols=55 Identities=20% Similarity=0.122 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHhcCC----CChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH
Q 011692 252 TSLSDYQKALTILERMVEP----DSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 308 (479)
Q Consensus 252 eAl~dy~kAL~I~~~llg~----d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~ 308 (479)
.|+...++||..+++.-.. .+..+|++|..||..|...+. +=-.+|++|-.|+++
T Consensus 329 ~a~~l~~~Al~yL~kA~d~ddPetWv~vAEa~I~LGNL~d~eS~--eQe~~Y~eAE~iL~k 387 (404)
T PF12753_consen 329 IAQELIKKALEYLKKAQDEDDPETWVDVAEAMIDLGNLYDNESK--EQEKAYKEAEKILKK 387 (404)
T ss_dssp THHHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHH-SSHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCChhHHHHHHHHHhhhhcccccchH--HHHHHHHHHHHHHHH
Confidence 4677777777777765433 356799999999999977654 234677787777554
No 431
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=39.37 E-value=38 Score=26.65 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHhhcCChhHHHHHHHhhhh
Q 011692 350 TDKEAEIETLSGLCGDLEKKLEDLQQVALFPKSILSEILGMASA 393 (479)
Q Consensus 350 ~~~~~Eieelk~ll~dl~~KieDlk~~~~~p~s~~~e~~~~~~~ 393 (479)
+..+.|++-||+-|.||+.|+..|+. -+.+||..++
T Consensus 10 ~AVrEEVevLK~~I~eL~~~n~~Le~--------EN~~Lk~~~~ 45 (59)
T PF01166_consen 10 YAVREEVEVLKEQIAELEERNSQLEE--------ENNLLKQNAS 45 (59)
T ss_dssp GT-TTSHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhcCC
Confidence 45677899999999999999999987 3567776554
No 432
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=39.10 E-value=5e+02 Score=27.60 Aligned_cols=43 Identities=14% Similarity=0.209 Sum_probs=33.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhCCCChh-----HHHHHHHHHHHHHhh
Q 011692 79 ESDYGEAAECFSRALEIRVSHYGELALE-----CVNAYYQYGRALLYK 121 (479)
Q Consensus 79 ~gdyeeAve~ys~Alei~~~~~Ge~~pe-----~A~~y~~YG~ALl~~ 121 (479)
..+++.-+.++.|=++++..+..+.+|. |-.++|-+|.++..+
T Consensus 188 E~~~~r~~kmhkRR~d~Le~~~~~Ln~~~y~~~~rql~fElae~~~~i 235 (371)
T PF12309_consen 188 EEDPDRQIKMHKRRADLLEPLLKELNPQYYLNLCRQLWFELAEIYSEI 235 (371)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788889999999999999999988875 456666677666655
No 433
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=39.03 E-value=1.9e+02 Score=31.33 Aligned_cols=90 Identities=13% Similarity=0.191 Sum_probs=58.0
Q ss_pred cChHHHHHHHHHHH----HHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC---CC-------
Q 011692 206 ESDLDLAWKMLDVA----RAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVE---PD------- 271 (479)
Q Consensus 206 ~~dle~Awe~Le~A----r~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg---~d------- 271 (479)
.|||..|+.+|+-- +.+|.+-+. -.+.+|.-+|=.|+.++||.+|+..|...|-...+.-. ..
T Consensus 135 LGDY~~Alk~l~~idl~~~~l~~~V~~---~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~q~d~i 211 (404)
T PF10255_consen 135 LGDYYQALKVLENIDLNKKGLYTKVPA---CHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSYQYDQI 211 (404)
T ss_pred ccCHHHHHHHhhccCcccchhhccCcc---hheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHH
Confidence 46777887776422 123443332 34678899999999999999999999999988776651 10
Q ss_pred ChhHHHHHHHHHHHHHcCC-ChhHHHHH
Q 011692 272 SRHIAELNFRICLCLEIGS-KPQEAIPY 298 (479)
Q Consensus 272 ~r~iAea~~~LG~ay~~~g-~~eeAi~~ 298 (479)
....=..|.-|++|+.... +.++.+..
T Consensus 212 ~K~~eqMyaLlAic~~l~p~~lde~i~~ 239 (404)
T PF10255_consen 212 NKKNEQMYALLAICLSLCPQRLDESISS 239 (404)
T ss_pred HhHHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 1122234555677776554 45665543
No 434
>PRK11637 AmiB activator; Provisional
Probab=38.67 E-value=5.2e+02 Score=27.64 Aligned_cols=7 Identities=29% Similarity=0.762 Sum_probs=3.1
Q ss_pred CCCCCCC
Q 011692 419 GDFDSPT 425 (479)
Q Consensus 419 ~gf~sp~ 425 (479)
++|.++.
T Consensus 298 ~~~~~~~ 304 (428)
T PRK11637 298 GGLGRPR 304 (428)
T ss_pred CCccCCC
Confidence 3454443
No 435
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=38.41 E-value=5.5e+02 Score=30.84 Aligned_cols=60 Identities=18% Similarity=0.243 Sum_probs=33.0
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCC----ChhHHHHHHHHHHHHHHHHHH
Q 011692 245 LEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGS----KPQEAIPYCQKAISVCKSRVQ 311 (479)
Q Consensus 245 le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g----~~eeAi~~~ekAL~I~k~rl~ 311 (479)
+.+++-+.=+..++++++|+.+-+ .+...++-++-..++ +++.++++|+..++-....+.
T Consensus 955 ~tle~re~eikeLkk~aKmkqeel-------Se~qvRldmaEkkLss~~k~~~h~v~~~~ek~ee~~a~lr 1018 (1243)
T KOG0971|consen 955 LTLEDRETEIKELKKSAKMKQEEL-------SEAQVRLDLAEKKLSSAAKDADHRVEKVQEKLEETQALLR 1018 (1243)
T ss_pred hhHHhhHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666665543 455555555555555 555555555555544443333
No 436
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=38.24 E-value=40 Score=35.37 Aligned_cols=52 Identities=15% Similarity=0.253 Sum_probs=25.4
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 246 EREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 246 e~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
..|+.++|...|+.||++.. ++ .+++..+|...+...+.-+|-.||-+||.|
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP-----~~---p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAP-----TN---PQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred hccchHHHHHHHHHHHhcCC-----CC---HHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 34555555555555555432 22 244445555555555555555555555544
No 437
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.04 E-value=59 Score=35.15 Aligned_cols=92 Identities=18% Similarity=0.075 Sum_probs=56.9
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 011692 206 ESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLC 285 (479)
Q Consensus 206 ~~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~a 285 (479)
-|+|+.|+..|-++|.-+- ....+++.+.++=.|++..+||-.-..+-.+|-..-.......--..+.+..--|++
T Consensus 163 cG~l~~Alr~YsR~RdYCT----s~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa 238 (466)
T KOG0686|consen 163 CGQLDNALRCYSRARDYCT----SAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAGLA 238 (466)
T ss_pred hccHHHHHhhhhhhhhhhc----chHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHH
Confidence 4555555555555554332 234678899999999999999988888777776652100000000012345556777
Q ss_pred HHcCCChhHHHHHHHH
Q 011692 286 LEIGSKPQEAIPYCQK 301 (479)
Q Consensus 286 y~~~g~~eeAi~~~ek 301 (479)
...+++|..|..||-.
T Consensus 239 ~L~lkkyk~aa~~fL~ 254 (466)
T KOG0686|consen 239 NLLLKKYKSAAKYFLL 254 (466)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 7777788888888744
No 438
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=38.04 E-value=1.2e+02 Score=28.48 Aligned_cols=71 Identities=14% Similarity=0.099 Sum_probs=46.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.+-.+|+-.|++ .|+...+...-|.+++.+|+|.+|+..|+.. .. +.+.....---++.|+
T Consensus 24 ~d~~D~e~lLdALrvL-------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l-------~~-~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 24 ADPYDAQAMLDALRVL-------RPNLKELDMFDGWLLIARGNYDEAARILREL-------LS-SAGAPPYGKALLALCL 88 (153)
T ss_pred CCHHHHHHHHHHHHHh-------CCCccccchhHHHHHHHcCCHHHHHHHHHhh-------hc-cCCCchHHHHHHHHHH
Confidence 3455566666666654 4677888899999999999999998776543 22 1112122223467777
Q ss_pred HcCCCh
Q 011692 287 EIGSKP 292 (479)
Q Consensus 287 ~~~g~~ 292 (479)
...++.
T Consensus 89 ~al~Dp 94 (153)
T TIGR02561 89 NAKGDA 94 (153)
T ss_pred HhcCCh
Confidence 777775
No 439
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=37.85 E-value=1.1e+02 Score=27.47 Aligned_cols=32 Identities=38% Similarity=0.549 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEI 95 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei 95 (479)
..-..-+.+|-.++.+|++++|+.+|..|+.+
T Consensus 61 ~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V 92 (121)
T PF02064_consen 61 RFFLQQVQLGEQLLAQGDYEEAAEHFYNALKV 92 (121)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 34667788999999999999999999999987
No 440
>PRK09343 prefoldin subunit beta; Provisional
Probab=37.44 E-value=3e+02 Score=24.45 Aligned_cols=70 Identities=17% Similarity=0.163 Sum_probs=44.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 011692 240 LAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLN 315 (479)
Q Consensus 240 LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~~l~~ 315 (479)
|..+......++..+...+.++.=+..+ +++ +.+|-.+|-+|-.. +.++|+.-..+=++.++.+|..|++
T Consensus 23 l~~~~~q~~~le~q~~e~~~~~~EL~~L-~~d----~~VYk~VG~vlv~q-d~~e~~~~l~~r~E~ie~~ik~lek 92 (121)
T PRK09343 23 LERLLQQKSQIDLELREINKALEELEKL-PDD----TPIYKIVGNLLVKV-DKTKVEKELKERKELLELRSRTLEK 92 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCc----chhHHHhhHHHhhc-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555666666555544 233 37888899999887 6678877777777766666665543
No 441
>PF12854 PPR_1: PPR repeat
Probab=37.09 E-value=57 Score=22.11 Aligned_cols=25 Identities=8% Similarity=-0.088 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHH
Q 011692 277 ELNFRICLCLEIGSKPQEAIPYCQK 301 (479)
Q Consensus 277 ea~~~LG~ay~~~g~~eeAi~~~ek 301 (479)
.+|.-|=.+|...|++++|++.|++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 5788888999999999999998864
No 442
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=36.59 E-value=3.6e+02 Score=26.43 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHH
Q 011692 348 LLTDKEAEIETLSGLCGDLEKKL 370 (479)
Q Consensus 348 ~~~~~~~Eieelk~ll~dl~~Ki 370 (479)
.+....+|+++|..|..||-.|+
T Consensus 183 ~LeQK~kEn~ELtkICDeLI~k~ 205 (207)
T PF05010_consen 183 SLEQKTKENEELTKICDELISKM 205 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567788888888888887775
No 443
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=36.32 E-value=5.3e+02 Score=27.60 Aligned_cols=36 Identities=17% Similarity=-0.015 Sum_probs=26.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011692 79 ESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (479)
Q Consensus 79 ~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (479)
.|+.++|...+..++.- ......++|..+|++|-..
T Consensus 195 ~gdre~Al~il~~~l~~-------~~~~~~d~~gL~GRIyKD~ 230 (374)
T PF13281_consen 195 PGDREKALQILLPVLES-------DENPDPDTLGLLGRIYKDL 230 (374)
T ss_pred CCCHHHHHHHHHHHHhc-------cCCCChHHHHHHHHHHHHH
Confidence 78888888887776443 2445567999999999766
No 444
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=36.19 E-value=54 Score=40.05 Aligned_cols=56 Identities=25% Similarity=0.288 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCC
Q 011692 233 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGS 290 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g 290 (479)
..+..-.+|+.|+-.|+|.+|+.+|..|+.+.+..- |+.=+|-++-.++.|+...+
T Consensus 241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~--D~lW~a~alEg~~~~~~l~~ 296 (1185)
T PF08626_consen 241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSN--DYLWLASALEGIAVCLLLLS 296 (1185)
T ss_pred hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcC--cHhhhHHHHHHHHHHHHHHh
Confidence 456777899999999999999999999999999853 66668888888887765433
No 445
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=36.11 E-value=5.7e+02 Score=27.39 Aligned_cols=37 Identities=24% Similarity=0.164 Sum_probs=26.9
Q ss_pred cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 011692 230 SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMV 268 (479)
Q Consensus 230 ~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~ll 268 (479)
.++-|.+|..|++- +..-.-+|...|++||+..+..+
T Consensus 214 N~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~y 250 (556)
T KOG3807|consen 214 NNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIY 250 (556)
T ss_pred CchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHH
Confidence 45678889998874 34456788888888888765544
No 446
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=35.93 E-value=26 Score=37.89 Aligned_cols=26 Identities=8% Similarity=0.129 Sum_probs=24.0
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 280 FRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 280 ~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
|.+|.+|.+.++|.+|+..|-..|-.
T Consensus 276 Y~VGFayLmmrryadai~~F~niLly 301 (525)
T KOG3677|consen 276 YQVGFAYLMMRRYADAIRVFLNILLY 301 (525)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887765
No 447
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.62 E-value=1.8e+02 Score=34.33 Aligned_cols=50 Identities=14% Similarity=0.239 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 011692 214 KMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTI 263 (479)
Q Consensus 214 e~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I 263 (479)
.+|..|..|-..+-.+...++.+|..-|+-....|+|++|...|-+++..
T Consensus 348 ~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 348 NLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 46688888877765445668999999999999999999999999998754
No 448
>PF05168 HEPN: HEPN domain; InterPro: IPR007842 The HEPN (higher eukaryotes and prokaryotes nucleotide-binding) domain is a region of 110 residues found in the C terminus of sacsin, a chaperonin implicated in an early-onset neurodegenerative disease in human, and in many bacterial and archeabacterial proteins. There are three classes of proteins with HEPN domain: Single-domain HEPN proteins found in many bacteria. Two-domain proteins with N-terminal nucleotidyltransferase (NT) and C- terminal HEPN domains. This N-terminal NT domain belongs to a large family of NTs, which includes several classes of enzymes that are responsible for some types of bacterial resistance to aminoglycosides. These enzymes deactivate various antibiotics by transferring a nucleotidyl group to the drug. A multidomain sacsin protein in genomes of fish and mammals. The HEPN domain is located at the C terminus of the protein, directly after the DnaJ domain (see PDOC00553 from PROSITEDOC). The crystal structure of the HEPN domain from the TM0613 protein of Thermotoga maritima indicates that it is structurally similar to the C-terminal all- alpha-helical domain of kanamycin nucleotidyltransferases (KNTases). It is composed of five alpha helices, three of which form an up- and-down helical bundle, with a pair of short helices on the side. The distant structural similarity suggests that the HEPN domain might be involved in nucleotide binding [].; PDB: 1O3U_A 1WOL_A 3O10_D 2HSB_A 1UFB_A.
Probab=35.38 E-value=1.1e+02 Score=25.34 Aligned_cols=37 Identities=27% Similarity=0.206 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 011692 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVS 98 (479)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~ 98 (479)
-+..|...+..+..++..|+|..|+-+..+|++...+
T Consensus 4 ~~~~A~~~l~~A~~~~~~~~~~~a~~~a~~a~e~~lk 40 (118)
T PF05168_consen 4 WLEKAEEDLKAAEILLEEGDYNWAVFHAYQAVEKALK 40 (118)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3577999999999999999999999999999997544
No 449
>PHA02562 46 endonuclease subunit; Provisional
Probab=35.21 E-value=3.7e+02 Score=29.40 Aligned_cols=9 Identities=0% Similarity=-0.123 Sum_probs=5.2
Q ss_pred HHHHHHhhC
Q 011692 93 LEIRVSHYG 101 (479)
Q Consensus 93 lei~~~~~G 101 (479)
.+++..++|
T Consensus 153 ~~il~~l~~ 161 (562)
T PHA02562 153 RKLVEDLLD 161 (562)
T ss_pred HHHHHHHhC
Confidence 455556665
No 450
>PRK04654 sec-independent translocase; Provisional
Probab=34.96 E-value=4.5e+02 Score=26.03 Aligned_cols=29 Identities=7% Similarity=0.123 Sum_probs=17.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011692 290 SKPQEAIPYCQKAISVCKSRVQRLLNEVK 318 (479)
Q Consensus 290 g~~eeAi~~~ekAL~I~k~rl~~l~~~l~ 318 (479)
.++-++.+.+-+.+.-++..+...++++.
T Consensus 23 erLPe~aRtlGk~irk~R~~~~~vk~El~ 51 (214)
T PRK04654 23 ERLPKAARFAGLWVRRARMQWDSVKQELE 51 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666665555555443
No 451
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.53 E-value=6.6e+02 Score=27.66 Aligned_cols=108 Identities=23% Similarity=0.144 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 011692 235 DILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLL 314 (479)
Q Consensus 235 ~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~~l~ 314 (479)
++-..+..-...+=+|+.+...|.+.-... .++...++ +|.+-|++|-.+|+..=..|.
T Consensus 123 dik~~i~KR~~Kl~DyD~~r~~~~kvq~~k----~kd~~k~~-----------------KAeeEl~~Aq~~fE~lN~~L~ 181 (460)
T KOG3771|consen 123 DIKKAIAKRGRKLVDYDSARHSFEKLQAKK----KKDEAKLA-----------------KAEEELEKAQQVFEELNNELL 181 (460)
T ss_pred hHHHHHHhhcchhhhhHHHHHHHHHHHHhc----CCChhhhH-----------------HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555567777777776654444 23333332 488899999999998888887
Q ss_pred HHHhhhccCCCCCCCccccccccccccccccchhhhHHHHHHHHHHhhHHHHHHHHHHH
Q 011692 315 NEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKLEDL 373 (479)
Q Consensus 315 ~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Eieelk~ll~dl~~KieDl 373 (479)
.+|-.+=. ..+.-....-+... - --...-.||--|-.-|.+|..|+.|.
T Consensus 182 eELP~L~~----sRv~f~vp~Fqsl~---~---~q~vf~~Emskl~~~L~~v~~kl~dq 230 (460)
T KOG3771|consen 182 EELPALYS----SRVGFFVPTFQSLF---N---LQLVFHKEMSKLYKNLYDVLDKLFDQ 230 (460)
T ss_pred HHHHHHHH----hhhhhhcchHHHHH---H---HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 77766632 11111111000000 0 00133456666677788888888776
No 452
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=34.50 E-value=4.4e+02 Score=28.26 Aligned_cols=72 Identities=11% Similarity=0.026 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH-------------------HHHHHhcCC------------CCh---hHHHHHHHH
Q 011692 237 LSALAEVALEREDIETSLSDYQKAL-------------------TILERMVEP------------DSR---HIAELNFRI 282 (479)
Q Consensus 237 ~~~LGev~le~g~yeeAl~dy~kAL-------------------~I~~~llg~------------d~r---~iAea~~~L 282 (479)
...-|-.+++.-+|.+|...+++.+ .....+.+. .++ .+.+.|+|-
T Consensus 174 ~l~~~y~~WD~fd~~~A~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na 253 (380)
T TIGR02710 174 KLTRAYLHWDRFEHEEALDYLNDPLPERLALYQVTSHDELEDVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANA 253 (380)
T ss_pred HHHHHHHHHHccCHHHHHHHHhhccchhhhhhhhhhhhHHHHHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHH
Confidence 3444556678889999999998211 111112211 011 334444442
Q ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHH
Q 011692 283 CLCLEIGSKPQEAIPYCQKAISVCKSR 309 (479)
Q Consensus 283 G~ay~~~g~~eeAi~~~ekAL~I~k~r 309 (479)
-. -..+|+|++|+..+=++++++-..
T Consensus 254 ~r-r~~~~ry~da~~r~yR~~e~~~q~ 279 (380)
T TIGR02710 254 ER-RATQGRYDDAAARLYRALELIVQI 279 (380)
T ss_pred HH-HHHccCHHHHHHHHHHHHHHHHHH
Confidence 22 227899999999999999987554
No 453
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=34.36 E-value=65 Score=20.10 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011692 236 ILSALAEVALEREDIETSLSDYQKAL 261 (479)
Q Consensus 236 v~~~LGev~le~g~yeeAl~dy~kAL 261 (479)
+|+.|=..|...|++++|...|++-.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHh
Confidence 57888899999999999999988654
No 454
>PHA01750 hypothetical protein
Probab=34.25 E-value=1.9e+02 Score=23.41 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=12.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Q 011692 352 KEAEIETLSGLCGDLEKKLEDLQQ 375 (479)
Q Consensus 352 ~~~Eieelk~ll~dl~~KieDlk~ 375 (479)
+..||++++-=...|++++.|++.
T Consensus 47 L~~ei~~~kikqDnl~~qv~eik~ 70 (75)
T PHA01750 47 LKTEIEELKIKQDELSRQVEEIKR 70 (75)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344555555444455666666554
No 455
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=33.68 E-value=3.1e+02 Score=23.64 Aligned_cols=71 Identities=27% Similarity=0.305 Sum_probs=43.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 011692 240 LAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLNE 316 (479)
Q Consensus 240 LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~~l~~~ 316 (479)
+..+......++.-+..++.+++-+..+- ++ +.+|-.+|-++-... .++|+..++.=++.++.+|..|++.
T Consensus 19 ~~~l~~q~~~le~~~~E~~~v~~eL~~l~-~d----~~vyk~VG~vlv~~~-~~e~~~~l~~r~e~ie~~i~~lek~ 89 (110)
T TIGR02338 19 LQAVATQKQQVEAQLKEAEKALEELERLP-DD----TPVYKSVGNLLVKTD-KEEAIQELKEKKETLELRVKTLQRQ 89 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-Cc----chhHHHhchhhheec-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555666666666666655543 22 367888898887744 6777777766666666665555443
No 456
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=33.29 E-value=1e+02 Score=26.21 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 011692 61 KTVEFADELMEKGTNALKESDYGEAAECFSRALEI 95 (479)
Q Consensus 61 ~~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei 95 (479)
.-+..|...+..+...+..|+|..|..+..+|...
T Consensus 40 ~el~~A~~~L~~A~~a~~~~~y~~A~~~A~~A~~~ 74 (103)
T PF14346_consen 40 VELKEAREKLQRAKAALDDGDYERARRLAEQAQAD 74 (103)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999999888888765
No 457
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=33.23 E-value=78 Score=30.84 Aligned_cols=62 Identities=15% Similarity=0.023 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHc
Q 011692 212 AWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEI 288 (479)
Q Consensus 212 Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~ 288 (479)
|..+|.+|..++ |.....|+-||.++...+++=+|+-+|-+||-.+. |. ..+..||...+..
T Consensus 1 A~~~Y~~A~~l~-------P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~-------Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLL-------PSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRI-------PF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH--------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB----------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhC-------CCCCCcccchhhhhccccchHHHHHHHHHHHhcCC-------Cc-HHHHHHHHHHHHH
Confidence 345566666553 55678999999999999999999999999985532 22 4556666666665
No 458
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=32.82 E-value=5.3e+02 Score=27.88 Aligned_cols=39 Identities=13% Similarity=0.109 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHc
Q 011692 250 IETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEI 288 (479)
Q Consensus 250 yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~ 288 (479)
+..-+...+.-+......|+++||.+-...-+|......
T Consensus 252 l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~ 290 (498)
T TIGR03007 252 LDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQ 290 (498)
T ss_pred hHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHH
Confidence 344455666666666777888888888777777666654
No 459
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=32.82 E-value=1.9e+02 Score=26.55 Aligned_cols=45 Identities=16% Similarity=0.068 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHH
Q 011692 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYY 112 (479)
Q Consensus 68 ~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~ 112 (479)
.++.+|..++..+++-.++-+|++|+.+..++.-....+.-+.++
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~ 47 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLT 47 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHH
Confidence 466788999999999999999999999988884334445544444
No 460
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=32.53 E-value=5.7e+02 Score=26.27 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=16.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHH
Q 011692 353 EAEIETLSGLCGDLEKKLEDLQ 374 (479)
Q Consensus 353 ~~Eieelk~ll~dl~~KieDlk 374 (479)
+.||++|-.=|-+|+.++..|+
T Consensus 271 r~evd~l~k~l~eLrre~r~Lk 292 (293)
T PF09712_consen 271 RSEVDELYKRLHELRREVRALK 292 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4688888777777777777665
No 461
>PRK09039 hypothetical protein; Validated
Probab=32.42 E-value=6.1e+02 Score=26.59 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 251 ETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 251 eeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
...+..+...|.-.+..+.+.||.+....-.|.-.-
T Consensus 115 ~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr 150 (343)
T PRK09039 115 EGRAGELAQELDSEKQVSARALAQVELLNQQIAALR 150 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344455566666666666666666655554444433
No 462
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=32.15 E-value=87 Score=19.73 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011692 236 ILSALAEVALEREDIETSLSDYQKAL 261 (479)
Q Consensus 236 v~~~LGev~le~g~yeeAl~dy~kAL 261 (479)
+|+.|=..|...|++++|+..|.+-.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 57788888999999999999998753
No 463
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=31.98 E-value=4.9e+02 Score=25.36 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 011692 349 LTDKEAEIETLSGLCGDLEKKLEDLQQV 376 (479)
Q Consensus 349 ~~~~~~Eieelk~ll~dl~~KieDlk~~ 376 (479)
+..++.||.+.+.-....+.+.+.+...
T Consensus 151 ~~~~~~ev~~~e~~~~~a~~~fe~is~~ 178 (224)
T cd07623 151 LDQAQQEIKEWEAKVDRGQKEFEEISKT 178 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667766666666666666666554
No 464
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=31.98 E-value=2e+02 Score=25.79 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 011692 298 YCQKAISVCKSRVQRLLNEVKSL 320 (479)
Q Consensus 298 ~~ekAL~I~k~rl~~l~~~l~~~ 320 (479)
.+..|+.+++.++..|+..++.+
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l 113 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKL 113 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999988887665544
No 465
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=31.40 E-value=6e+02 Score=31.13 Aligned_cols=9 Identities=22% Similarity=0.460 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 011692 307 KSRVQRLLN 315 (479)
Q Consensus 307 k~rl~~l~~ 315 (479)
..++..++.
T Consensus 757 ~~~~~~~~~ 765 (1163)
T COG1196 757 QERLEELEE 765 (1163)
T ss_pred HHHHHHHHH
Confidence 333333333
No 466
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=31.28 E-value=1.7e+02 Score=31.29 Aligned_cols=74 Identities=19% Similarity=0.217 Sum_probs=46.6
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALER---------EDIETSLSDYQKALTILERMVEPDSRHIAE 277 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~---------g~yeeAl~dy~kAL~I~~~llg~d~r~iAe 277 (479)
+|.+.|+.++..++ .+ ......++|..+|.||-+. +.+++|+..|+++..+...++
T Consensus 196 gdre~Al~il~~~l---~~---~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y--------- 260 (374)
T PF13281_consen 196 GDREKALQILLPVL---ES---DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY--------- 260 (374)
T ss_pred CCHHHHHHHHHHHH---hc---cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc---------
Confidence 56667766655442 11 1234577888999887543 457888888888888874432
Q ss_pred HHHHHHHHHHcCCChhHH
Q 011692 278 LNFRICLCLEIGSKPQEA 295 (479)
Q Consensus 278 a~~~LG~ay~~~g~~eeA 295 (479)
.=.|++..+...|...+.
T Consensus 261 ~GIN~AtLL~~~g~~~~~ 278 (374)
T PF13281_consen 261 SGINAATLLMLAGHDFET 278 (374)
T ss_pred chHHHHHHHHHcCCcccc
Confidence 234677777777764443
No 467
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=31.22 E-value=2.4e+02 Score=23.91 Aligned_cols=58 Identities=19% Similarity=0.262 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccccccccccccccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHH
Q 011692 296 IPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKLEDLQQ 375 (479)
Q Consensus 296 i~~~ekAL~I~k~rl~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Eieelk~ll~dl~~KieDlk~ 375 (479)
|...+..|.-|+.+|+..+..|....-+ ++.-..+++|+..|++.+...+.+|.-|+.
T Consensus 7 Id~lEekl~~cr~~le~ve~rL~~~eLs----------------------~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 7 IDGLEEKLAQCRRRLEAVESRLRRRELS----------------------PEARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHcccCCC----------------------hHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 4556677777777777777766543210 123357789999999999999999999987
No 468
>KOG2880 consensus SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain [Signal transduction mechanisms]
Probab=31.04 E-value=6.9e+02 Score=26.79 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 011692 232 EKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIA 276 (479)
Q Consensus 232 ~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iA 276 (479)
+.+.-...+|.||++-||++.|.-.|-+-..++.+-++ .||..+
T Consensus 33 Rsg~ei~rmA~VY~~EgN~enafvLy~ry~tLfiEkip-kHrDy~ 76 (424)
T KOG2880|consen 33 RSGTEILRMANVYLEEGNVENAFVLYLRYITLFIEKIP-KHRDYR 76 (424)
T ss_pred hhhHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHhcc-cCcchh
Confidence 34666778999999999999999999999999888653 566544
No 469
>PRK04406 hypothetical protein; Provisional
Probab=30.41 E-value=3.1e+02 Score=22.51 Aligned_cols=20 Identities=20% Similarity=0.214 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 011692 301 KAISVCKSRVQRLLNEVKSL 320 (479)
Q Consensus 301 kAL~I~k~rl~~l~~~l~~~ 320 (479)
+.+..++.||..|+..+.-+
T Consensus 4 ~~~~~le~Ri~~LE~~lAfQ 23 (75)
T PRK04406 4 KTIEQLEERINDLECQLAFQ 23 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 44455667777776665543
No 470
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=30.35 E-value=2.3e+02 Score=25.49 Aligned_cols=76 Identities=12% Similarity=0.049 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHcC
Q 011692 213 WKMLDVARAIAEKHWG--DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPD-SRHIAELNFRICLCLEIG 289 (479)
Q Consensus 213 we~Le~Ar~Iyek~~~--~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d-~r~iAea~~~LG~ay~~~ 289 (479)
..+|+++..-|..... +.++...++...++.. +++...| ..+.... -..+|.-|-..+..++..
T Consensus 46 ~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~------~dp~~if-------~~L~~~~IG~~~AlfYe~~A~~lE~~ 112 (125)
T smart00777 46 LTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC------DEPRELF-------QFLYSKGIGTKLALFYEEWAQLLEAA 112 (125)
T ss_pred HHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc------CCHHHHH-------HHHHHCCcchhhHHHHHHHHHHHHHc
Confidence 4567888887766543 3477888888888753 2233333 3332222 345688888999999999
Q ss_pred CChhHHHHHHHH
Q 011692 290 SKPQEAIPYCQK 301 (479)
Q Consensus 290 g~~eeAi~~~ek 301 (479)
|++.+|.+.|+.
T Consensus 113 g~~~~A~~iy~~ 124 (125)
T smart00777 113 GRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHc
Confidence 999999998874
No 471
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=30.33 E-value=5.5e+02 Score=25.45 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=37.8
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhc
Q 011692 78 KESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQE 124 (479)
Q Consensus 78 ~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~ 124 (479)
+.-.|..+..++.++.--....+|+..+ .+.++..||.++..+|+.
T Consensus 58 k~~~~p~~~~~Lg~~M~~~G~~lg~dS~-~G~aL~~~G~a~~kia~~ 103 (223)
T cd07614 58 KNPGYPQSEGLLGETMIRYGKELGDESN-FGDALLDAGESMKRLAEV 103 (223)
T ss_pred cCCCCCChHhHHHHHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHH
Confidence 3445778889999999988888998766 789999999999888755
No 472
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=30.29 E-value=1.6e+02 Score=25.50 Aligned_cols=76 Identities=16% Similarity=0.143 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH
Q 011692 231 MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRV 310 (479)
Q Consensus 231 ~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl 310 (479)
.+.|..+...|.++...|+.++|--.|-+.+.|. ..++.+.- |.........+-...+...++-.++
T Consensus 35 ~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~-~ki~~Hpd------------y~~~~~~~~~~~~~~~~~~~il~~l 101 (115)
T PF08969_consen 35 LRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLV-EKIPKHPD------------YKKDKNSYKKLLGKKKLNEVILEEL 101 (115)
T ss_dssp HHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-CCHCCSCC------------CCCTHHCCHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHhhcCcc------------ccccchHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhh
Q 011692 311 QRLLNEVKS 319 (479)
Q Consensus 311 ~~l~~~l~~ 319 (479)
+.|+..|+.
T Consensus 102 E~Lk~~L~~ 110 (115)
T PF08969_consen 102 EKLKPSLKE 110 (115)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
No 473
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=30.28 E-value=3.3e+02 Score=22.89 Aligned_cols=61 Identities=10% Similarity=0.134 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccccccccccccccccchhhhHHHHHHHHHHhhHHHHHHHHH
Q 011692 292 PQEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKLE 371 (479)
Q Consensus 292 ~eeAi~~~ekAL~I~k~rl~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Eieelk~ll~dl~~Kie 371 (479)
+.....-++.+|.-++.-|..|+..+.-... + +..+---..||..=+..|.+++.+|.
T Consensus 37 ~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~----------n------------p~kF~l~~~Ei~~Rr~fv~~~~~~i~ 94 (97)
T PF09177_consen 37 LKWLKRELRNALQSIEWDLEDLEEAVRIVEK----------N------------PSKFNLSEEEISRRRQFVSAIRNQIK 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------C------------HHHHT-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------C------------ccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 3455566666777777777777666654321 0 11222335788888888888888888
Q ss_pred HHH
Q 011692 372 DLQ 374 (479)
Q Consensus 372 Dlk 374 (479)
.+|
T Consensus 95 ~~k 97 (97)
T PF09177_consen 95 QMK 97 (97)
T ss_dssp HHH
T ss_pred hcC
Confidence 775
No 474
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.18 E-value=4.3e+02 Score=30.10 Aligned_cols=96 Identities=19% Similarity=0.221 Sum_probs=68.6
Q ss_pred cChHHHHHHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC----------
Q 011692 206 ESDLDLAWKMLDVARAIAEKHW-----GDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEP---------- 270 (479)
Q Consensus 206 ~~dle~Awe~Le~Ar~Iyek~~-----~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~---------- 270 (479)
-.-|+.|..+|.+|..++.-+. -.+|..++.+..++++...+|+++-|....++||=.....+-+
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 3678899999999988875441 1368889999999999999999999999999999888776432
Q ss_pred ------CChhHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011692 271 ------DSRHIAELNFRICLCLEIGSKPQEAIPYCQK 301 (479)
Q Consensus 271 ------d~r~iAea~~~LG~ay~~~g~~eeAi~~~ek 301 (479)
.+|..=.++|+-=.-+...|=+.-|.++|.-
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKl 367 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKL 367 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 3444444444444444455555555555443
No 475
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=30.07 E-value=2.3e+02 Score=30.24 Aligned_cols=57 Identities=16% Similarity=0.307 Sum_probs=44.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccccccccccccccccchhhhHHHHHHHHHHhhHHHHHHHH
Q 011692 291 KPQEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKL 370 (479)
Q Consensus 291 ~~eeAi~~~ekAL~I~k~rl~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Eieelk~ll~dl~~Ki 370 (479)
++++.+..+++-+.-++.+|..|+..+... + ..++.+++++.-|.-++.+|
T Consensus 239 ~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~---------------------------~--k~~~k~~~~~~q~~~~~k~~ 289 (406)
T PF02388_consen 239 NGKEYLESLQEKLEKLEKEIEKLEEKLEKN---------------------------P--KKKNKLKELEEQLASLEKRI 289 (406)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------T--HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------------------c--chhhHHHHHHHHHHHHHHHH
Confidence 457888888888888888888887766532 1 45678888999999999999
Q ss_pred HHHHHh
Q 011692 371 EDLQQV 376 (479)
Q Consensus 371 eDlk~~ 376 (479)
.++++.
T Consensus 290 ~~~~~~ 295 (406)
T PF02388_consen 290 EEAEEL 295 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
No 476
>PF13041 PPR_2: PPR repeat family
Probab=30.02 E-value=1.1e+02 Score=22.07 Aligned_cols=28 Identities=14% Similarity=0.107 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKAL 261 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL 261 (479)
+-+|+.|=..+.+.|++++|+..|++-.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~ 30 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMK 30 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3478899999999999999999998765
No 477
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=29.96 E-value=96 Score=32.95 Aligned_cols=37 Identities=24% Similarity=0.383 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 011692 60 EKTVEFADELMEKGTNALKESDYGEAAECFSRALEIR 96 (479)
Q Consensus 60 ~~~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~ 96 (479)
-..++.+..+-+.|...++.++|..|..-|.+++.-+
T Consensus 216 ~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~ 252 (372)
T KOG0546|consen 216 DKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYL 252 (372)
T ss_pred chhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhh
Confidence 3456778888899999999999999999999998864
No 478
>KOG1997 consensus PH domain-containing protein [Signal transduction mechanisms]
Probab=29.93 E-value=2.3e+02 Score=35.37 Aligned_cols=85 Identities=11% Similarity=0.028 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC--CCChhHHHHHHHHHHHHHcCCC
Q 011692 214 KMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVE--PDSRHIAELNFRICLCLEIGSK 291 (479)
Q Consensus 214 e~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg--~d~r~iAea~~~LG~ay~~~g~ 291 (479)
+.|++|...+.+..-++ -++.+|-.+=-||-.+-+|.+=...|.+--.+..++.. .++.++.-+||++|.--.+-|.
T Consensus 1162 ~~l~~~~~~~~~aelye-~~~~v~kliipv~e~~~~~~~L~~~~~~l~~~~~~i~~~~~~~kr~~g~yfrv~fyg~~fg~ 1240 (1518)
T KOG1997|consen 1162 KLLELAAALLSKAELYE-LLAPVYKLIIPVLEKNRSFKKLAKVHALLQRAYDKILEVESSPKRCFGTYFRVGFYGSKFGE 1240 (1518)
T ss_pred HHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccccccccceeeeEeechhhccc
Confidence 44444444444332222 24566666666677777777666666666566655544 4567788888888876565565
Q ss_pred hhHHHHHH
Q 011692 292 PQEAIPYC 299 (479)
Q Consensus 292 ~eeAi~~~ 299 (479)
.+...-.|
T Consensus 1241 ~~~~e~vy 1248 (1518)
T KOG1997|consen 1241 LDNKEYVY 1248 (1518)
T ss_pred ccchhhhh
Confidence 54443333
No 479
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=29.77 E-value=1.3e+02 Score=28.48 Aligned_cols=46 Identities=15% Similarity=0.103 Sum_probs=39.5
Q ss_pred cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 011692 230 SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHI 275 (479)
Q Consensus 230 ~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~i 275 (479)
.+....++.+|-.=|...|+|+-|+...+.+|+-..+..|.+|+.+
T Consensus 136 ~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~v 181 (181)
T PF09311_consen 136 IPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPDV 181 (181)
T ss_dssp S-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCC
Confidence 4567889999999999999999999999999999999999999864
No 480
>PRK05685 fliS flagellar protein FliS; Validated
Probab=29.56 E-value=2.7e+02 Score=24.97 Aligned_cols=43 Identities=21% Similarity=0.241 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCh
Q 011692 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELAL 105 (479)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~p 105 (479)
.+.+...+.++..++..++|+++.....+|..|..+..+-..+
T Consensus 32 ydgai~~l~~A~~ai~~~~~~~~~~~l~ka~~Ii~eL~~sLd~ 74 (132)
T PRK05685 32 YEGALSFLAQAKLAIEQGDIEAKGEYLSKAINIINGLRNSLDM 74 (132)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4567788888999999999999999999999999988765543
No 481
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=29.53 E-value=6e+02 Score=27.11 Aligned_cols=94 Identities=16% Similarity=0.130 Sum_probs=63.9
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 011692 206 ESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLC 285 (479)
Q Consensus 206 ~~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~a 285 (479)
..|.+.|+++|+.-+.-+.... .+-.++.++..+|.++++.++...+..-+...-.+..++.+-.. .+=..||.++.-
T Consensus 88 ~~D~~~al~~Le~i~~~~~~~~-e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~-~Vh~~fY~lssq 165 (380)
T KOG2908|consen 88 ISDKDEALEFLEKIIEKLKEYK-EPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTS-NVHSSFYSLSSQ 165 (380)
T ss_pred hccHHHHHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCCh-hhhhhHHHHHHH
Confidence 3577888888887665554332 12357889999999999999999999888888887777655333 344567777776
Q ss_pred HH-cCCChhHHHHHHHHHHH
Q 011692 286 LE-IGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 286 y~-~~g~~eeAi~~~ekAL~ 304 (479)
|. ..++|.. ||..||.
T Consensus 166 Yyk~~~d~a~---yYr~~L~ 182 (380)
T KOG2908|consen 166 YYKKIGDFAS---YYRHALL 182 (380)
T ss_pred HHHHHHhHHH---HHHHHHH
Confidence 65 3455543 4444443
No 482
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=29.50 E-value=68 Score=32.98 Aligned_cols=58 Identities=19% Similarity=0.056 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 011692 208 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILER 266 (479)
Q Consensus 208 dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~ 266 (479)
.+..|.+.++.|+..-++..+ +..+.-|.++.+..|+...+|+-|..+|.+|+.++..
T Consensus 54 ~~~n~~e~~d~ALm~Ae~r~D-~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~ 111 (368)
T COG5091 54 TMENAKELLDKALMTAEGRGD-RSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVD 111 (368)
T ss_pred ChhhHHHHHHHHHHhhhccCC-cceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence 467788999999988776643 4456678888899999999999999999999998654
No 483
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.01 E-value=1.9e+02 Score=26.79 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 011692 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEI 95 (479)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei 95 (479)
....-.+-+.+|-.++.+|++++++.+|..|+-+
T Consensus 77 ~E~~Fmqqv~lGE~L~~qg~~e~ga~h~~nAi~v 110 (143)
T KOG4056|consen 77 VEKFFMQQVQLGEELLAQGNEEEGAEHLANAIVV 110 (143)
T ss_pred HHHHHHHHHHhHHHHHHccCHHHHHHHHHHHHhh
Confidence 3345667788999999999999999999999886
No 484
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=28.97 E-value=7.2e+02 Score=26.38 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=16.6
Q ss_pred hcCCHHHHHHHHHHHHHHHHH
Q 011692 246 EREDIETSLSDYQKALTILER 266 (479)
Q Consensus 246 e~g~yeeAl~dy~kAL~I~~~ 266 (479)
..++|++|+..|+.+|+.+..
T Consensus 22 ~a~nY~eA~~lY~~aleYF~~ 42 (439)
T KOG0739|consen 22 NAKNYEEALRLYQNALEYFLH 42 (439)
T ss_pred chhchHHHHHHHHHHHHHHHH
Confidence 357899999999998876543
No 485
>PRK04863 mukB cell division protein MukB; Provisional
Probab=28.79 E-value=9.6e+02 Score=30.52 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 233 KVDILSALAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
+..+...|.++.-..+...+-+..+++-+.+..
T Consensus 309 L~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e 341 (1486)
T PRK04863 309 LVEMARELAELNEAESDLEQDYQAASDHLNLVQ 341 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555544444444444443
No 486
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=28.75 E-value=1.6e+02 Score=32.13 Aligned_cols=92 Identities=13% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCcch------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 011692 210 DLAWKMLDVARAIAEKHWGDSME------KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRIC 283 (479)
Q Consensus 210 e~Awe~Le~Ar~Iyek~~~~~~~------~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG 283 (479)
+.|+..|.+|.....-+.+...+ .++|+..-+..+ ..++++.++..+++|-.+..++- -|..|++++|-++
T Consensus 370 k~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L~~A~~~f~kL~--~he~ildv~yf~A 446 (482)
T KOG4322|consen 370 KAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYLDLAQSIFYKLG--CHEKILDVTYFSA 446 (482)
T ss_pred HHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHHHHHHHHHHHcc--chHHHHHHHHHHH
Q ss_pred HHHHcCCC---hhHHHHHHHHHHH
Q 011692 284 LCLEIGSK---PQEAIPYCQKAIS 304 (479)
Q Consensus 284 ~ay~~~g~---~eeAi~~~ekAL~ 304 (479)
..|...|+ .+++...|+|++.
T Consensus 447 ~~yn~lGd~~eRn~~AslFrk~~~ 470 (482)
T KOG4322|consen 447 YQYNHLGDSPERNLLASLFRKAWR 470 (482)
T ss_pred HHHHhhcCchHHHHHHHHHHHHHH
No 487
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.75 E-value=4.1e+02 Score=29.00 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChh
Q 011692 233 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQ 293 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~e 293 (479)
+=..|.-||+.|+..|+++.|+..|-++-..+-.. -+++..+.|+=.+--..++|-
T Consensus 149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~-----khvInm~ln~i~VSI~~~nw~ 204 (466)
T KOG0686|consen 149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSA-----KHVINMCLNLILVSIYMGNWG 204 (466)
T ss_pred HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch-----HHHHHHHHHHHHHHHhhcchh
Confidence 45689999999999999999999999976665432 345555555555555555553
No 488
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=28.72 E-value=6e+02 Score=25.37 Aligned_cols=34 Identities=12% Similarity=0.065 Sum_probs=24.3
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQ 258 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~ 258 (479)
+.......-.+.|..+|.++++.++|.+|..||-
T Consensus 81 ~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 81 KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3434455567899999999999999999988873
No 489
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=28.48 E-value=6.1e+02 Score=25.34 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHH
Q 011692 62 TVEFADELMEKG-TNALKESDYGEAAECFSRALEIRVS 98 (479)
Q Consensus 62 ~l~~A~~L~~~G-~~~~~~gdyeeAve~ys~Alei~~~ 98 (479)
.-.+|.+|+-.| ..++..|++..|.++---.++.+.+
T Consensus 5 ky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~ 42 (260)
T PF04190_consen 5 KYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEK 42 (260)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHH
Confidence 344566666666 4556667777777776666666555
No 490
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=28.39 E-value=4.5e+02 Score=23.81 Aligned_cols=25 Identities=12% Similarity=0.464 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHH
Q 011692 350 TDKEAEIETLSGLCGDLEKKLEDLQ 374 (479)
Q Consensus 350 ~~~~~Eieelk~ll~dl~~KieDlk 374 (479)
..+..+++.+..++..|+.||..++
T Consensus 99 ~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 99 SQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555555554
No 491
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=28.34 E-value=58 Score=33.47 Aligned_cols=59 Identities=24% Similarity=0.175 Sum_probs=48.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 011692 247 REDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 247 ~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k 307 (479)
.-....|.+++.+||-+.+.-- +.-.|..+.++.++.|....+|+-|..||.+|+..+.
T Consensus 52 ~~~~~n~~e~~d~ALm~Ae~r~--D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~ 110 (368)
T COG5091 52 DATMENAKELLDKALMTAEGRG--DRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYV 110 (368)
T ss_pred ccChhhHHHHHHHHHHhhhccC--CcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 3456778899999988876432 3445888999999999999999999999999998874
No 492
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=28.13 E-value=1.1e+02 Score=32.10 Aligned_cols=49 Identities=22% Similarity=0.243 Sum_probs=43.0
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHH
Q 011692 56 DGEREKTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYY 112 (479)
Q Consensus 56 ~~~~~~~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~ 112 (479)
+-++....+.|..|...|...-..|..-+|+..|..|+.| ||++-..|.
T Consensus 9 ~~ekd~~~kkA~~l~~~av~~Eq~G~l~dai~fYR~AlqI--------~~diEs~~r 57 (366)
T KOG2997|consen 9 DYEKDPLAKKAIALYEKAVLKEQDGSLYDAINFYRDALQI--------VPDIESKYR 57 (366)
T ss_pred ccccchHHHHHHHHHHHHHHHhhcCcHHHHHHHHHhhhcC--------CchHHHHHH
Confidence 3356667788999999999999999999999999999999 888877777
No 493
>PRK14011 prefoldin subunit alpha; Provisional
Probab=28.09 E-value=1.1e+02 Score=28.39 Aligned_cols=35 Identities=9% Similarity=-0.005 Sum_probs=20.5
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 011692 281 RICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLN 315 (479)
Q Consensus 281 ~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~~l~~ 315 (479)
.+|.=|.-....++|+.+|++=++.+++.+..|..
T Consensus 75 dIGtGy~VEk~~~eA~~~~~~ri~~l~~~~~~l~~ 109 (144)
T PRK14011 75 GVGSDIYLEKDVSEVIEDFKKSVEELDKTKKEGNK 109 (144)
T ss_pred EccCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445678888887666655555555543
No 494
>cd09248 BRO1_Rhophilin_1 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-1. This subfamily contains the Bro1-like domain of the RhoA-binding protein, Rhophilin-1. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. The Drosophila knockout of the Rhophilin-1 is embryonic lethal, suggesting an essential role i
Probab=28.09 E-value=7.8e+02 Score=26.48 Aligned_cols=152 Identities=12% Similarity=0.027 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHHhhC--------CCChhHHHHHHHHHHHHHhhhhccC
Q 011692 64 EFADELMEKGTNALKESD---------YGEAAECFSRALEIRVSHYG--------ELALECVNAYYQYGRALLYKAQEEA 126 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gd---------yeeAve~ys~Alei~~~~~G--------e~~pe~A~~y~~YG~ALl~~ar~es 126 (479)
|.+..|+++|..+-..|- +..|+.+|++|.-++.-+.- ++.+++-.+|..+
T Consensus 104 EKasVLFNigAL~Sqlaa~~~r~t~eGlK~A~~~FQ~AAG~F~~L~e~~~~~Ps~Dms~~~L~~L~~L------------ 171 (384)
T cd09248 104 EKGSVLFNIGALHTQIGARQDRSCTEGTRRAIDAFQRAAGAFSLLRENFSNAPSPDMSTASLSMLEQL------------ 171 (384)
T ss_pred HHHHHHHhHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCHHHHHHHHHH------------
Q ss_pred CcCCCCCCCcCCCCCCCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCc
Q 011692 127 DPLVSVPKKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDE 206 (479)
Q Consensus 127 dvLG~~~~~~~e~~~~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~ 206 (479)
T Consensus 172 -------------------------------------------------------------------------------- 171 (384)
T cd09248 172 -------------------------------------------------------------------------------- 171 (384)
T ss_pred --------------------------------------------------------------------------------
Q ss_pred ChHHHHHHHH-HHHH-------HHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHH-------HHHHHHHHHHHhcCCC
Q 011692 207 SDLDLAWKML-DVAR-------AIAEKHWGDSMEKVDILSALAEVALEREDIETSLS-------DYQKALTILERMVEPD 271 (479)
Q Consensus 207 ~dle~Awe~L-e~Ar-------~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~-------dy~kAL~I~~~llg~d 271 (479)
-+.+|.|++ +++. .-..+.. -+|..-...++.|.+..+.=..-. ....-+.++..+|
T Consensus 172 -MLAQAQEC~~eKail~~~~~~~d~~k~~----~iAKlAaQvs~~Y~~a~~~~~~~~~~~~i~~~W~~~v~~K~~hF--- 243 (384)
T cd09248 172 -MVAQAQECIFEGLLLPLLATPQDFFAQL----QLAQEAAQVAAEYRLVHRTMAQPPVRDYVPFSWTALVHVKAEHF--- 243 (384)
T ss_pred -HHHHHHHHHHHHHHhhhcccccccchhh----HHHHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHH---
Q ss_pred ChhHHHHHHHHHHHHHcCCC----------------------------------------hhHHHHHHHHHHHHHH----
Q 011692 272 SRHIAELNFRICLCLEIGSK----------------------------------------PQEAIPYCQKAISVCK---- 307 (479)
Q Consensus 272 ~r~iAea~~~LG~ay~~~g~----------------------------------------~eeAi~~~ekAL~I~k---- 307 (479)
-|.+||..++++...+. +.+||...+.|+.+..
T Consensus 244 ---~AlA~y~~A~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ahl~~a~~~~eea~r~~~~c~~ 320 (384)
T cd09248 244 ---CALAHYHAAMALCDSSPASEGELATQEKAFLQPHTSQPEGPSLPQEPEERRKLGKAHLKRAILGQEEALRLHALCRI 320 (384)
T ss_pred ---HHHHHHHHHHHHHhcccccccchHHHHHHhccCCCCCCCccccccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q ss_pred -HHHHHHHHHHh
Q 011692 308 -SRVQRLLNEVK 318 (479)
Q Consensus 308 -~rl~~l~~~l~ 318 (479)
+++..|+..|.
T Consensus 321 l~~~~~l~~~l~ 332 (384)
T cd09248 321 LRKVDLLQAVLT 332 (384)
T ss_pred hccHHHHHHHHH
No 495
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=28.08 E-value=72 Score=32.23 Aligned_cols=53 Identities=15% Similarity=0.128 Sum_probs=41.6
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILER 266 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~ 266 (479)
.|.+-|-+.|..|+ ..-++-+..|+.||+.....|+++.|..-|++.|+|...
T Consensus 9 ~D~~aaaely~qal-------~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 9 GDAEAAAELYNQAL-------ELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred CChHHHHHHHHHHh-------hcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 45555555555554 445677889999999999999999999999999998643
No 496
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=27.81 E-value=4.9e+02 Score=27.16 Aligned_cols=36 Identities=19% Similarity=0.145 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 011692 233 KVDILSALAEVALEREDIETSLSDYQKALTILERMV 268 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~ll 268 (479)
.|.+|..+|....+.++|-+||..|+.|+...+...
T Consensus 252 ~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~~~ 287 (346)
T cd09247 252 EARSQLYLARRLKEAGHIGVAVGVLREALRNLKKKL 287 (346)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 578899999999999999999999999999766543
No 497
>PRK11637 AmiB activator; Provisional
Probab=27.71 E-value=2.9e+02 Score=29.58 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 011692 294 EAIPYCQKAISVCKSRVQRLLNEVK 318 (479)
Q Consensus 294 eAi~~~ekAL~I~k~rl~~l~~~l~ 318 (479)
..+...++.|.-....|..++.+|+
T Consensus 75 ~~l~~l~~qi~~~~~~i~~~~~~i~ 99 (428)
T PRK11637 75 AQLKKQEEAISQASRKLRETQNTLN 99 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443333
No 498
>PRK09039 hypothetical protein; Validated
Probab=27.70 E-value=7.3e+02 Score=26.01 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=10.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHH
Q 011692 240 LAEVALEREDIETSLSDYQKALTI 263 (479)
Q Consensus 240 LGev~le~g~yeeAl~dy~kAL~I 263 (479)
|+.-.....+.+..+..++.-+.+
T Consensus 69 L~le~~~~~~l~~~l~~l~~~l~~ 92 (343)
T PRK09039 69 LSLERQGNQDLQDSVANLRASLSA 92 (343)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH
Confidence 333333444444555444444443
No 499
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=27.46 E-value=5.6e+02 Score=28.56 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHH
Q 011692 350 TDKEAEIETLSGLCGDLEKKLEDLQ 374 (479)
Q Consensus 350 ~~~~~Eieelk~ll~dl~~KieDlk 374 (479)
..++++++.++.-+.++-.+|-..+
T Consensus 349 e~L~~el~~l~~~l~~~a~~Ls~~R 373 (563)
T TIGR00634 349 EALEEEVDKLEEELDKAAVALSLIR 373 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 500
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=27.45 E-value=90 Score=32.80 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 011692 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRV 97 (479)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~ 97 (479)
.+..|..|+.++.-.-..++|++|..+|+.||+.+.
T Consensus 6 ~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~ 41 (439)
T KOG0739|consen 6 FLQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFL 41 (439)
T ss_pred HHHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHH
Confidence 567799999999999999999999999999999553
Done!