Query 011693
Match_columns 479
No_of_seqs 434 out of 3687
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 04:11:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011693.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011693hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0117 Heterogeneous nuclear 100.0 1.3E-58 2.8E-63 420.0 35.2 319 96-423 78-406 (506)
2 TIGR01648 hnRNP-R-Q heterogene 100.0 3E-47 6.5E-52 375.9 36.3 252 98-358 55-310 (578)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1E-46 2.2E-51 366.5 32.3 255 101-357 3-351 (352)
4 TIGR01628 PABP-1234 polyadenyl 100.0 2E-42 4.4E-47 355.3 38.4 252 103-358 2-367 (562)
5 KOG0145 RNA-binding protein EL 100.0 5.8E-42 1.2E-46 290.1 23.7 253 101-355 41-358 (360)
6 KOG0148 Apoptosis-promoting RN 100.0 9.7E-40 2.1E-44 278.5 23.0 225 100-359 5-242 (321)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 9.5E-38 2.1E-42 312.3 30.9 239 101-356 2-352 (481)
8 KOG0127 Nucleolar protein fibr 100.0 2.9E-37 6.2E-42 287.3 23.4 251 101-356 5-379 (678)
9 TIGR01622 SF-CC1 splicing fact 100.0 4.1E-36 8.9E-41 302.0 30.7 250 98-356 86-449 (457)
10 TIGR01659 sex-lethal sex-letha 100.0 2.6E-36 5.5E-41 284.8 26.8 173 98-358 104-278 (346)
11 KOG0144 RNA-binding protein CU 100.0 2.6E-36 5.6E-41 273.6 19.0 253 101-356 34-505 (510)
12 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2E-34 4.4E-39 288.4 29.7 240 101-355 96-480 (481)
13 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.5E-34 3.2E-39 294.9 27.7 245 100-355 174-502 (509)
14 TIGR01645 half-pint poly-U bin 100.0 4.5E-34 9.8E-39 282.7 29.9 148 99-248 105-269 (612)
15 KOG0123 Polyadenylate-binding 100.0 9.6E-31 2.1E-35 248.0 22.7 240 102-355 2-246 (369)
16 KOG0123 Polyadenylate-binding 100.0 2.6E-30 5.6E-35 245.1 20.7 249 101-358 76-352 (369)
17 KOG0127 Nucleolar protein fibr 100.0 5.1E-30 1.1E-34 239.2 14.5 234 101-337 117-516 (678)
18 KOG0124 Polypyrimidine tract-b 100.0 7.9E-28 1.7E-32 213.8 18.7 248 101-352 113-532 (544)
19 KOG0117 Heterogeneous nuclear 100.0 8.1E-26 1.8E-30 206.6 28.8 188 153-358 44-251 (506)
20 TIGR01645 half-pint poly-U bin 100.0 3.5E-27 7.6E-32 233.9 21.3 172 181-356 107-285 (612)
21 KOG0110 RNA-binding protein (R 99.9 6.4E-27 1.4E-31 225.9 18.1 249 100-357 384-695 (725)
22 KOG4212 RNA-binding protein hn 99.9 1.1E-25 2.3E-30 204.8 23.2 145 100-248 43-279 (608)
23 KOG0144 RNA-binding protein CU 99.9 4.2E-27 9.1E-32 213.9 12.9 172 182-359 35-210 (510)
24 KOG0147 Transcriptional coacti 99.9 5.2E-27 1.1E-31 220.6 13.7 245 100-354 178-527 (549)
25 KOG0131 Splicing factor 3b, su 99.9 1.5E-26 3.1E-31 186.8 13.0 172 101-359 9-181 (203)
26 KOG4205 RNA-binding protein mu 99.9 1.4E-25 3E-30 204.8 21.1 178 100-361 5-182 (311)
27 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 3.5E-25 7.6E-30 215.3 24.1 170 180-357 2-173 (352)
28 KOG0148 Apoptosis-promoting RN 99.9 7.2E-26 1.6E-30 193.9 13.1 152 102-263 63-236 (321)
29 KOG0109 RNA-binding protein LA 99.9 1.7E-25 3.8E-30 193.5 14.8 155 102-362 3-157 (346)
30 KOG4211 Splicing factor hnRNP- 99.9 6E-24 1.3E-28 197.4 25.5 245 98-352 7-355 (510)
31 TIGR01622 SF-CC1 splicing fact 99.9 2.3E-24 5E-29 216.9 19.0 171 180-355 88-266 (457)
32 TIGR01648 hnRNP-R-Q heterogene 99.9 5.2E-24 1.1E-28 211.3 20.6 191 152-356 18-223 (578)
33 TIGR01628 PABP-1234 polyadenyl 99.9 1.8E-23 3.8E-28 215.2 19.1 168 183-357 2-169 (562)
34 KOG0145 RNA-binding protein EL 99.9 1.2E-23 2.6E-28 179.0 14.5 171 180-358 40-212 (360)
35 KOG0146 RNA-binding protein ET 99.9 1.6E-23 3.4E-28 179.0 11.8 246 95-359 13-369 (371)
36 TIGR01642 U2AF_lg U2 snRNP aux 99.9 4.4E-22 9.5E-27 203.2 19.6 168 179-356 173-376 (509)
37 KOG0110 RNA-binding protein (R 99.9 3.7E-22 8E-27 193.2 15.0 223 98-353 224-596 (725)
38 KOG1190 Polypyrimidine tract-b 99.9 1.7E-20 3.8E-25 169.9 17.4 242 100-359 27-377 (492)
39 KOG4206 Spliceosomal protein s 99.8 1.9E-19 4.2E-24 152.1 17.6 207 101-353 9-220 (221)
40 KOG0124 Polypyrimidine tract-b 99.8 1.6E-20 3.5E-25 167.4 10.9 170 182-355 114-290 (544)
41 PLN03134 glycine-rich RNA-bind 99.8 4.7E-19 1E-23 146.4 15.0 83 274-356 33-115 (144)
42 KOG0105 Alternative splicing f 99.8 6.3E-19 1.4E-23 142.8 14.5 174 99-344 4-177 (241)
43 KOG1548 Transcription elongati 99.8 6.4E-17 1.4E-21 144.2 19.6 204 98-356 131-353 (382)
44 PLN03134 glycine-rich RNA-bind 99.8 5.7E-18 1.2E-22 140.0 11.2 82 100-181 33-114 (144)
45 KOG0147 Transcriptional coacti 99.7 1.9E-18 4.1E-23 163.3 7.8 172 182-358 180-361 (549)
46 KOG0120 Splicing factor U2AF, 99.7 4.3E-17 9.2E-22 156.5 16.9 244 101-355 175-492 (500)
47 KOG4211 Splicing factor hnRNP- 99.7 6E-16 1.3E-20 144.5 21.3 168 183-361 12-188 (510)
48 KOG1456 Heterogeneous nuclear 99.7 3.3E-16 7.1E-21 140.6 18.6 243 96-356 26-364 (494)
49 KOG1365 RNA-binding protein Fu 99.7 7.6E-16 1.6E-20 138.8 20.8 253 100-357 59-364 (508)
50 KOG1190 Polypyrimidine tract-b 99.7 4.8E-15 1E-19 134.9 20.2 235 102-354 151-490 (492)
51 KOG1457 RNA binding protein (c 99.7 2.6E-15 5.7E-20 125.7 15.3 217 99-343 32-274 (284)
52 KOG0149 Predicted RNA-binding 99.7 1.8E-16 3.9E-21 134.3 7.7 78 101-179 12-89 (247)
53 KOG0149 Predicted RNA-binding 99.6 9.1E-16 2E-20 130.1 10.3 79 275-354 12-90 (247)
54 PF00076 RRM_1: RNA recognitio 99.6 1.2E-15 2.6E-20 110.9 8.8 70 104-174 1-70 (70)
55 PF00076 RRM_1: RNA recognitio 99.6 1.7E-15 3.6E-20 110.2 8.7 70 278-348 1-70 (70)
56 KOG0122 Translation initiation 99.6 1.2E-15 2.5E-20 129.9 8.8 82 274-355 188-269 (270)
57 TIGR01659 sex-lethal sex-letha 99.6 1.6E-15 3.4E-20 143.9 10.5 84 273-356 105-188 (346)
58 KOG0106 Alternative splicing f 99.6 7.9E-16 1.7E-20 132.0 7.7 167 102-352 2-168 (216)
59 KOG0122 Translation initiation 99.6 3.1E-15 6.7E-20 127.3 9.4 82 100-181 188-269 (270)
60 KOG0121 Nuclear cap-binding pr 99.6 3.3E-15 7.2E-20 113.8 7.4 79 275-353 36-114 (153)
61 KOG4207 Predicted splicing fac 99.6 3.5E-15 7.6E-20 123.5 7.5 83 273-355 11-93 (256)
62 KOG0125 Ataxin 2-binding prote 99.6 6.6E-15 1.4E-19 130.4 9.5 89 270-360 91-179 (376)
63 PF14259 RRM_6: RNA recognitio 99.6 9.5E-15 2.1E-19 106.0 8.2 70 104-174 1-70 (70)
64 PF14259 RRM_6: RNA recognitio 99.6 1.2E-14 2.6E-19 105.5 8.7 70 278-348 1-70 (70)
65 COG0724 RNA-binding proteins ( 99.6 3E-14 6.4E-19 134.7 13.9 169 101-335 115-285 (306)
66 KOG0114 Predicted RNA-binding 99.6 1.9E-14 4.1E-19 105.4 9.0 80 275-357 18-97 (124)
67 KOG0121 Nuclear cap-binding pr 99.6 8.3E-15 1.8E-19 111.7 7.2 81 98-178 33-113 (153)
68 PLN03120 nucleic acid binding 99.6 2.5E-14 5.5E-19 126.2 10.5 76 276-355 5-80 (260)
69 PLN03120 nucleic acid binding 99.5 2.7E-14 5.9E-19 126.0 10.6 77 101-181 4-80 (260)
70 KOG0107 Alternative splicing f 99.5 2.8E-14 6.1E-19 115.3 9.6 78 275-357 10-87 (195)
71 KOG0126 Predicted RNA-binding 99.5 7.1E-16 1.5E-20 125.0 0.5 81 100-180 34-114 (219)
72 KOG4212 RNA-binding protein hn 99.5 1E-13 2.2E-18 127.3 14.4 169 180-353 43-292 (608)
73 KOG0113 U1 small nuclear ribon 99.5 5.7E-14 1.2E-18 123.0 11.4 88 270-357 96-183 (335)
74 KOG0114 Predicted RNA-binding 99.5 4.7E-14 1E-18 103.4 8.7 81 98-181 15-95 (124)
75 KOG0107 Alternative splicing f 99.5 3.4E-14 7.4E-19 114.8 8.1 75 101-180 10-84 (195)
76 KOG0113 U1 small nuclear ribon 99.5 5E-14 1.1E-18 123.4 9.2 79 101-179 101-179 (335)
77 KOG4207 Predicted splicing fac 99.5 2.7E-14 5.9E-19 118.2 6.9 81 99-179 11-91 (256)
78 KOG0125 Ataxin 2-binding prote 99.5 3.4E-14 7.4E-19 126.0 8.0 80 100-181 95-174 (376)
79 PLN03121 nucleic acid binding 99.5 1.2E-13 2.6E-18 119.8 10.5 78 99-180 3-80 (243)
80 KOG0105 Alternative splicing f 99.5 1.4E-13 3E-18 112.0 10.1 79 275-356 6-84 (241)
81 PLN03213 repressor of silencin 99.5 1.4E-13 3E-18 128.3 9.6 77 275-355 10-88 (759)
82 KOG1456 Heterogeneous nuclear 99.5 3.9E-12 8.4E-17 114.8 18.3 167 182-361 32-205 (494)
83 PLN03213 repressor of silencin 99.5 1.7E-13 3.7E-18 127.7 9.4 77 101-181 10-88 (759)
84 KOG0111 Cyclophilin-type pepti 99.5 6.6E-14 1.4E-18 117.0 5.5 85 275-359 10-94 (298)
85 KOG0126 Predicted RNA-binding 99.5 1.4E-14 3E-19 117.5 1.4 79 275-353 35-113 (219)
86 smart00362 RRM_2 RNA recogniti 99.4 6.8E-13 1.5E-17 96.6 9.6 72 277-350 1-72 (72)
87 smart00362 RRM_2 RNA recogniti 99.4 7.8E-13 1.7E-17 96.3 9.8 72 103-176 1-72 (72)
88 PLN03121 nucleic acid binding 99.4 6.1E-13 1.3E-17 115.4 10.5 76 275-354 5-80 (243)
89 KOG0130 RNA-binding protein RB 99.4 3.7E-13 8E-18 103.7 7.6 86 272-357 69-154 (170)
90 smart00360 RRM RNA recognition 99.4 1.3E-12 2.8E-17 94.8 9.1 71 106-176 1-71 (71)
91 KOG0130 RNA-binding protein RB 99.4 4.2E-13 9.1E-18 103.4 6.5 80 100-179 71-150 (170)
92 KOG0131 Splicing factor 3b, su 99.4 3.5E-13 7.7E-18 109.7 6.4 79 275-353 9-87 (203)
93 smart00360 RRM RNA recognition 99.4 1.2E-12 2.6E-17 95.0 8.6 71 280-350 1-71 (71)
94 KOG0111 Cyclophilin-type pepti 99.4 5.9E-13 1.3E-17 111.3 5.7 83 100-182 9-91 (298)
95 KOG0128 RNA-binding protein SA 99.4 1.4E-13 3E-18 136.9 1.9 233 99-358 569-818 (881)
96 cd00590 RRM RRM (RNA recogniti 99.4 6E-12 1.3E-16 92.1 9.9 74 277-351 1-74 (74)
97 cd00590 RRM RRM (RNA recogniti 99.4 7.7E-12 1.7E-16 91.5 10.2 74 103-177 1-74 (74)
98 PF13893 RRM_5: RNA recognitio 99.3 6.1E-12 1.3E-16 86.5 8.5 56 292-352 1-56 (56)
99 KOG0108 mRNA cleavage and poly 99.3 3.4E-12 7.4E-17 122.6 8.8 80 102-181 19-98 (435)
100 KOG0129 Predicted RNA-binding 99.3 3.8E-11 8.2E-16 113.7 15.5 171 98-336 256-432 (520)
101 KOG0108 mRNA cleavage and poly 99.3 4.1E-12 8.8E-17 122.0 8.5 82 276-357 19-100 (435)
102 smart00361 RRM_1 RNA recogniti 99.3 8.6E-12 1.9E-16 89.9 8.0 62 289-350 2-70 (70)
103 smart00361 RRM_1 RNA recogniti 99.3 1.3E-11 2.9E-16 88.9 8.4 61 115-175 2-69 (70)
104 COG0724 RNA-binding proteins ( 99.3 1.6E-11 3.5E-16 115.9 10.3 80 275-354 115-194 (306)
105 KOG4210 Nuclear localization s 99.3 9E-12 1.9E-16 114.5 7.9 181 100-358 87-267 (285)
106 KOG0132 RNA polymerase II C-te 99.2 5.3E-10 1.2E-14 110.4 18.2 77 275-357 421-497 (894)
107 PF13893 RRM_5: RNA recognitio 99.2 5.2E-11 1.1E-15 81.8 7.9 56 118-178 1-56 (56)
108 KOG4660 Protein Mei2, essentia 99.2 6.8E-11 1.5E-15 112.9 11.3 73 98-175 72-144 (549)
109 KOG0415 Predicted peptidyl pro 99.2 1.1E-11 2.3E-16 111.2 5.4 85 98-182 236-320 (479)
110 KOG0109 RNA-binding protein LA 99.2 1.7E-11 3.7E-16 107.2 6.3 72 276-355 3-74 (346)
111 KOG0132 RNA polymerase II C-te 99.2 3.4E-09 7.5E-14 104.8 22.7 75 100-180 420-494 (894)
112 KOG0116 RasGAP SH3 binding pro 99.2 1.4E-10 3.1E-15 110.8 12.3 81 276-357 289-369 (419)
113 KOG4307 RNA binding protein RB 99.2 3.2E-10 6.9E-15 110.4 12.5 163 186-352 316-511 (944)
114 KOG0146 RNA-binding protein ET 99.2 3.6E-11 7.8E-16 103.8 5.2 86 96-181 280-365 (371)
115 KOG4307 RNA binding protein RB 99.1 1.9E-09 4.2E-14 105.1 16.9 250 100-357 433-738 (944)
116 KOG1365 RNA-binding protein Fu 99.1 4.9E-11 1.1E-15 108.1 5.0 142 103-248 163-347 (508)
117 KOG0415 Predicted peptidyl pro 99.1 1.2E-10 2.5E-15 104.7 6.5 85 273-357 237-321 (479)
118 KOG4454 RNA binding protein (R 99.1 1.9E-11 4.2E-16 102.5 1.2 138 98-339 6-147 (267)
119 KOG4208 Nucleolar RNA-binding 99.1 3.8E-10 8.3E-15 94.4 7.7 81 275-355 49-130 (214)
120 KOG4205 RNA-binding protein mu 99.1 3.9E-09 8.4E-14 97.3 14.4 82 275-357 6-87 (311)
121 KOG4208 Nucleolar RNA-binding 99.1 6.7E-10 1.5E-14 93.0 8.5 82 100-181 48-130 (214)
122 KOG0120 Splicing factor U2AF, 99.0 1.1E-09 2.4E-14 105.9 10.8 151 99-250 287-479 (500)
123 KOG4661 Hsp27-ERE-TATA-binding 99.0 6.9E-10 1.5E-14 105.7 7.9 83 98-180 402-484 (940)
124 KOG4206 Spliceosomal protein s 99.0 1.1E-09 2.4E-14 93.4 8.4 82 275-359 9-94 (221)
125 KOG0112 Large RNA-binding prot 99.0 3E-10 6.5E-15 114.0 5.1 167 95-358 366-534 (975)
126 KOG0226 RNA-binding proteins [ 99.0 5.1E-10 1.1E-14 96.3 5.1 166 183-355 98-270 (290)
127 KOG0153 Predicted RNA-binding 99.0 1.6E-09 3.6E-14 97.5 8.5 77 272-354 225-302 (377)
128 KOG0153 Predicted RNA-binding 98.9 5.3E-09 1.2E-13 94.2 8.0 77 98-180 225-302 (377)
129 KOG0128 RNA-binding protein SA 98.9 1.6E-10 3.5E-15 115.5 -1.9 134 101-248 667-800 (881)
130 KOG1457 RNA binding protein (c 98.9 2.5E-08 5.5E-13 84.3 10.6 87 275-361 34-124 (284)
131 KOG4661 Hsp27-ERE-TATA-binding 98.8 6.1E-09 1.3E-13 99.3 7.3 81 274-354 404-484 (940)
132 KOG0533 RRM motif-containing p 98.8 2.1E-08 4.7E-13 88.6 9.0 83 275-358 83-165 (243)
133 PF04059 RRM_2: RNA recognitio 98.8 6.7E-08 1.5E-12 72.9 9.5 78 102-179 2-85 (97)
134 PF04059 RRM_2: RNA recognitio 98.8 5.4E-08 1.2E-12 73.3 8.8 80 276-355 2-87 (97)
135 KOG0533 RRM motif-containing p 98.8 4.5E-08 9.8E-13 86.6 9.3 81 100-181 82-162 (243)
136 KOG1995 Conserved Zn-finger pr 98.7 6E-07 1.3E-11 82.0 15.3 86 272-357 63-156 (351)
137 KOG4676 Splicing factor, argin 98.7 4.1E-09 8.9E-14 96.2 1.5 204 102-354 8-225 (479)
138 KOG1548 Transcription elongati 98.7 8.1E-08 1.8E-12 86.7 7.9 80 275-355 134-221 (382)
139 KOG4660 Protein Mei2, essentia 98.6 4E-08 8.7E-13 94.3 6.0 72 272-348 72-143 (549)
140 KOG3152 TBP-binding protein, a 98.6 1.9E-08 4.1E-13 87.0 3.4 74 100-173 73-158 (278)
141 KOG0226 RNA-binding proteins [ 98.6 3.1E-08 6.7E-13 85.5 4.7 82 98-179 187-268 (290)
142 KOG4849 mRNA cleavage factor I 98.6 9.7E-07 2.1E-11 79.7 14.2 77 274-350 79-157 (498)
143 KOG0116 RasGAP SH3 binding pro 98.6 7.1E-08 1.5E-12 92.5 7.4 76 101-177 288-363 (419)
144 KOG4209 Splicing factor RNPS1, 98.6 1.3E-07 2.9E-12 84.1 7.7 80 275-355 101-180 (231)
145 PF11608 Limkain-b1: Limkain b 98.6 4E-07 8.7E-12 64.9 7.6 70 102-181 3-77 (90)
146 KOG4209 Splicing factor RNPS1, 98.6 9.6E-08 2.1E-12 85.0 5.5 80 99-179 99-178 (231)
147 KOG0921 Dosage compensation co 98.5 1.9E-06 4.2E-11 87.6 14.4 15 220-234 897-911 (1282)
148 KOG0106 Alternative splicing f 98.5 1.8E-07 4E-12 80.8 5.3 74 276-357 2-75 (216)
149 KOG4454 RNA binding protein (R 98.5 7.5E-08 1.6E-12 81.3 2.8 77 275-353 9-85 (267)
150 PF11608 Limkain-b1: Limkain b 98.4 1.5E-06 3.3E-11 62.0 7.5 70 276-355 3-77 (90)
151 KOG0151 Predicted splicing reg 98.4 6.6E-07 1.4E-11 88.1 6.8 86 271-356 170-258 (877)
152 KOG2193 IGF-II mRNA-binding pr 98.4 6.4E-08 1.4E-12 89.3 -0.1 155 102-355 2-157 (584)
153 KOG1995 Conserved Zn-finger pr 98.3 6.9E-07 1.5E-11 81.7 4.9 83 100-182 65-155 (351)
154 KOG0151 Predicted splicing reg 98.3 1.7E-06 3.7E-11 85.3 6.8 82 98-179 171-255 (877)
155 PF08777 RRM_3: RNA binding mo 98.2 4.2E-06 9.1E-11 64.9 5.7 71 276-352 2-77 (105)
156 KOG0921 Dosage compensation co 98.1 2.4E-05 5.3E-10 79.9 11.6 11 467-477 1270-1280(1282)
157 PF08777 RRM_3: RNA binding mo 98.1 7.2E-06 1.6E-10 63.6 5.4 69 102-176 2-75 (105)
158 COG5175 MOT2 Transcriptional r 97.9 2.8E-05 6.1E-10 70.1 6.7 88 101-188 114-211 (480)
159 KOG1855 Predicted RNA-binding 97.8 0.00094 2E-08 62.7 15.4 93 247-339 203-308 (484)
160 KOG3973 Uncharacterized conser 97.8 0.00015 3.3E-09 65.8 10.0 19 184-202 152-170 (465)
161 COG5175 MOT2 Transcriptional r 97.8 0.00012 2.5E-09 66.3 8.8 80 276-355 115-203 (480)
162 KOG4210 Nuclear localization s 97.7 1.9E-05 4E-10 73.0 2.8 79 102-181 185-264 (285)
163 KOG4849 mRNA cleavage factor I 97.7 3.2E-05 7E-10 70.1 4.2 77 102-178 81-159 (498)
164 KOG2314 Translation initiation 97.7 0.00017 3.7E-09 69.8 8.3 76 276-352 59-141 (698)
165 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00017 3.7E-09 48.2 5.3 52 102-160 2-53 (53)
166 KOG0115 RNA-binding protein p5 97.6 0.00022 4.7E-09 62.4 6.7 92 155-250 6-97 (275)
167 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00029 6.4E-09 47.0 5.6 52 276-334 2-53 (53)
168 KOG3152 TBP-binding protein, a 97.5 7E-05 1.5E-09 65.4 3.0 71 276-346 75-157 (278)
169 KOG0129 Predicted RNA-binding 97.5 0.00044 9.6E-09 66.6 8.5 63 100-162 369-432 (520)
170 KOG2314 Translation initiation 97.3 0.0013 2.8E-08 63.9 9.7 76 100-176 57-139 (698)
171 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.0013 2.8E-08 50.1 7.8 77 276-354 7-91 (100)
172 KOG1855 Predicted RNA-binding 97.3 0.00025 5.3E-09 66.5 4.0 67 100-166 230-309 (484)
173 PF08952 DUF1866: Domain of un 97.3 0.0015 3.2E-08 52.9 7.8 75 98-181 24-107 (146)
174 PF08952 DUF1866: Domain of un 97.2 0.0017 3.6E-08 52.6 7.9 58 290-356 51-108 (146)
175 KOG2416 Acinus (induces apopto 97.2 0.00052 1.1E-08 67.0 5.8 76 100-181 443-522 (718)
176 KOG0115 RNA-binding protein p5 97.1 0.0013 2.8E-08 57.7 6.5 102 236-351 5-110 (275)
177 KOG2202 U2 snRNP splicing fact 97.1 0.00026 5.6E-09 62.1 2.0 67 290-357 83-150 (260)
178 KOG1996 mRNA splicing factor [ 97.1 0.0016 3.5E-08 58.1 6.7 78 276-353 282-365 (378)
179 PF05172 Nup35_RRM: Nup53/35/4 97.0 0.0032 7E-08 48.0 7.2 77 101-179 6-90 (100)
180 KOG2416 Acinus (induces apopto 97.0 0.001 2.2E-08 65.1 5.4 85 270-360 439-527 (718)
181 KOG4676 Splicing factor, argin 97.0 0.0011 2.5E-08 61.4 5.5 76 276-352 8-86 (479)
182 KOG1996 mRNA splicing factor [ 96.7 0.0052 1.1E-07 54.9 7.0 65 115-179 300-365 (378)
183 KOG2318 Uncharacterized conser 96.7 0.0066 1.4E-07 59.5 8.1 80 98-177 171-304 (650)
184 KOG2202 U2 snRNP splicing fact 96.7 0.0011 2.3E-08 58.3 2.3 63 116-179 83-146 (260)
185 PF08675 RNA_bind: RNA binding 96.5 0.016 3.4E-07 41.9 7.1 55 276-339 10-64 (87)
186 PF10309 DUF2414: Protein of u 96.4 0.022 4.8E-07 38.9 6.7 54 276-337 6-62 (62)
187 PF10309 DUF2414: Protein of u 96.2 0.033 7.2E-07 38.1 6.9 55 101-163 5-62 (62)
188 PF15023 DUF4523: Protein of u 96.0 0.037 8E-07 44.2 7.5 73 273-353 84-160 (166)
189 PF03467 Smg4_UPF3: Smg-4/UPF3 95.9 0.024 5.1E-07 48.7 6.3 79 276-354 8-97 (176)
190 PF08675 RNA_bind: RNA binding 95.8 0.04 8.7E-07 39.8 6.2 56 101-165 9-64 (87)
191 KOG1924 RhoA GTPase effector D 95.6 0.076 1.7E-06 54.2 9.6 19 149-167 205-223 (1102)
192 KOG2236 Uncharacterized conser 95.5 0.49 1.1E-05 45.7 14.0 28 197-239 246-273 (483)
193 KOG2068 MOT2 transcription fac 95.4 0.0037 8E-08 57.4 -0.2 81 101-181 77-163 (327)
194 PF15023 DUF4523: Protein of u 95.4 0.1 2.2E-06 41.8 7.6 74 98-179 83-160 (166)
195 KOG2193 IGF-II mRNA-binding pr 95.4 0.013 2.7E-07 55.2 3.0 78 276-359 2-80 (584)
196 KOG2591 c-Mpl binding protein, 95.3 0.76 1.7E-05 45.4 14.8 69 276-351 176-248 (684)
197 KOG0112 Large RNA-binding prot 95.3 0.0066 1.4E-07 62.6 1.2 80 274-354 371-450 (975)
198 PF04847 Calcipressin: Calcipr 95.3 0.069 1.5E-06 46.0 7.1 64 288-357 8-73 (184)
199 PF11767 SET_assoc: Histone ly 95.2 0.1 2.2E-06 36.4 6.3 56 285-349 10-65 (66)
200 PF03467 Smg4_UPF3: Smg-4/UPF3 95.1 0.019 4.1E-07 49.3 3.1 71 100-170 6-82 (176)
201 PF07576 BRAP2: BRCA1-associat 95.0 0.28 6.1E-06 38.3 9.1 68 275-344 13-81 (110)
202 PF04931 DNA_pol_phi: DNA poly 94.5 0.024 5.2E-07 61.0 2.9 8 118-125 741-748 (784)
203 KOG2591 c-Mpl binding protein, 94.5 0.05 1.1E-06 53.3 4.6 70 100-176 174-247 (684)
204 PF07576 BRAP2: BRCA1-associat 94.3 0.31 6.7E-06 38.0 7.8 67 101-169 12-80 (110)
205 KOG2135 Proteins containing th 94.2 0.029 6.2E-07 53.8 2.3 74 276-356 373-447 (526)
206 KOG2253 U1 snRNP complex, subu 94.0 0.042 9.2E-07 55.1 3.0 74 270-352 35-108 (668)
207 PF03880 DbpA: DbpA RNA bindin 93.7 0.37 8.1E-06 34.7 6.8 59 285-352 11-74 (74)
208 KOG4483 Uncharacterized conser 93.6 0.28 6E-06 46.2 7.4 54 101-161 391-445 (528)
209 PF04147 Nop14: Nop14-like fam 93.5 0.062 1.3E-06 58.0 3.5 14 113-126 426-439 (840)
210 PF04931 DNA_pol_phi: DNA poly 93.4 0.031 6.7E-07 60.3 1.1 8 113-120 729-736 (784)
211 KOG2135 Proteins containing th 93.2 0.076 1.7E-06 51.1 3.1 76 100-182 371-447 (526)
212 KOG2068 MOT2 transcription fac 93.1 0.037 8.1E-07 51.0 1.0 80 276-355 78-163 (327)
213 PF04847 Calcipressin: Calcipr 92.9 0.34 7.3E-06 41.8 6.4 60 114-179 8-69 (184)
214 KOG4574 RNA-binding protein (c 92.8 0.074 1.6E-06 54.8 2.6 77 277-359 300-378 (1007)
215 KOG0804 Cytoplasmic Zn-finger 92.7 0.33 7.2E-06 46.6 6.7 71 98-170 71-142 (493)
216 KOG4285 Mitotic phosphoprotein 92.3 0.63 1.4E-05 42.3 7.4 74 276-357 198-272 (350)
217 KOG0804 Cytoplasmic Zn-finger 91.9 0.71 1.5E-05 44.5 7.7 68 275-344 74-142 (493)
218 KOG4285 Mitotic phosphoprotein 91.8 0.69 1.5E-05 42.1 7.1 72 101-180 197-269 (350)
219 PRK11634 ATP-dependent RNA hel 91.7 2.9 6.3E-05 43.9 12.9 60 285-353 497-561 (629)
220 KOG1999 RNA polymerase II tran 89.1 2.3 5E-05 45.2 9.1 29 141-169 208-236 (1024)
221 KOG2253 U1 snRNP complex, subu 88.7 0.29 6.3E-06 49.4 2.4 70 99-177 38-107 (668)
222 PF03880 DbpA: DbpA RNA bindin 88.7 2.5 5.3E-05 30.4 6.7 58 112-178 12-74 (74)
223 KOG4574 RNA-binding protein (c 88.6 0.33 7.1E-06 50.3 2.7 70 104-179 301-372 (1007)
224 PF11767 SET_assoc: Histone ly 88.5 2 4.3E-05 30.0 5.8 55 112-175 11-65 (66)
225 PF07292 NID: Nmi/IFP 35 domai 88.2 0.69 1.5E-05 34.3 3.5 56 146-202 1-73 (88)
226 PF05285 SDA1: SDA1; InterPro 87.3 0.31 6.6E-06 46.4 1.6 7 113-119 190-196 (324)
227 KOG2318 Uncharacterized conser 84.9 3.5 7.6E-05 41.2 7.4 79 274-352 173-305 (650)
228 PF11081 DUF2890: Protein of u 83.7 0.49 1.1E-05 40.2 0.9 6 1-6 1-6 (187)
229 KOG2141 Protein involved in hi 83.4 0.45 9.7E-06 48.6 0.7 25 320-344 624-648 (822)
230 KOG2038 CAATT-binding transcri 83.1 1.2 2.5E-05 46.1 3.4 19 104-122 958-976 (988)
231 PF10567 Nab6_mRNP_bdg: RNA-re 82.0 42 0.00092 30.9 15.3 61 100-160 14-81 (309)
232 KOG1999 RNA polymerase II tran 82.0 8 0.00017 41.4 9.0 24 223-246 208-231 (1024)
233 KOG4019 Calcineurin-mediated s 80.6 1.8 4E-05 36.4 3.2 76 276-357 11-92 (193)
234 KOG2044 5'-3' exonuclease HKE1 80.1 18 0.0004 37.9 10.6 21 276-298 668-688 (931)
235 KOG2891 Surface glycoprotein [ 78.3 6.8 0.00015 35.3 6.1 82 275-356 149-269 (445)
236 KOG4410 5-formyltetrahydrofola 77.9 5.5 0.00012 36.1 5.4 47 275-327 330-377 (396)
237 PF07292 NID: Nmi/IFP 35 domai 76.9 1.8 3.9E-05 32.1 1.9 69 228-297 1-74 (88)
238 COG5638 Uncharacterized conser 76.9 6.5 0.00014 37.5 5.9 37 100-136 145-186 (622)
239 PF05918 API5: Apoptosis inhib 76.1 0.85 1.8E-05 46.3 0.0 11 346-356 456-466 (556)
240 PF02724 CDC45: CDC45-like pro 75.9 1.5 3.2E-05 45.9 1.7 13 234-246 400-412 (622)
241 PF05918 API5: Apoptosis inhib 75.5 0.9 1.9E-05 46.1 0.0 10 330-339 427-436 (556)
242 KOG2141 Protein involved in hi 75.3 0.74 1.6E-05 47.1 -0.7 11 284-294 553-563 (822)
243 COG4907 Predicted membrane pro 74.5 2.9 6.3E-05 40.5 3.1 16 318-333 418-433 (595)
244 KOG2295 C2H2 Zn-finger protein 74.0 0.62 1.3E-05 46.0 -1.5 71 101-171 231-301 (648)
245 PF07530 PRE_C2HC: Associated 72.4 8.8 0.00019 27.0 4.4 63 116-181 2-65 (68)
246 PF02724 CDC45: CDC45-like pro 72.3 2.1 4.6E-05 44.7 1.8 11 196-206 337-347 (622)
247 KOG3064 RNA-binding nuclear pr 72.2 3 6.5E-05 37.1 2.4 6 146-151 284-289 (303)
248 KOG2236 Uncharacterized conser 70.2 1.2E+02 0.0026 30.1 13.4 8 104-111 187-194 (483)
249 PRK14548 50S ribosomal protein 69.3 21 0.00046 26.3 5.9 56 278-336 23-80 (84)
250 PF05285 SDA1: SDA1; InterPro 69.1 2.5 5.3E-05 40.4 1.4 8 193-200 231-238 (324)
251 COG1512 Beta-propeller domains 69.1 6.5 0.00014 36.2 4.0 8 468-475 263-270 (271)
252 PF03468 XS: XS domain; Inter 69.0 3.6 7.8E-05 32.5 2.0 57 276-335 9-75 (116)
253 KOG1308 Hsp70-interacting prot 68.5 10 0.00022 35.8 5.1 18 287-304 216-233 (377)
254 KOG4365 Uncharacterized conser 68.4 0.95 2.1E-05 43.3 -1.5 83 276-359 4-86 (572)
255 KOG4483 Uncharacterized conser 68.0 30 0.00065 33.2 8.0 55 275-336 391-446 (528)
256 KOG0262 RNA polymerase I, larg 67.1 12 0.00025 41.4 5.8 15 108-122 1448-1462(1640)
257 TIGR03636 L23_arch archaeal ri 66.7 29 0.00062 25.1 6.1 57 277-336 15-73 (77)
258 smart00596 PRE_C2HC PRE_C2HC d 65.9 13 0.00028 26.0 4.0 62 116-180 2-64 (69)
259 KOG2891 Surface glycoprotein [ 65.8 4.4 9.5E-05 36.4 2.1 69 100-168 148-247 (445)
260 KOG2295 C2H2 Zn-finger protein 65.4 1 2.2E-05 44.5 -2.0 70 275-344 231-300 (648)
261 TIGR02542 B_forsyth_147 Bacter 64.9 35 0.00075 26.5 6.4 106 109-235 11-129 (145)
262 KOG4410 5-formyltetrahydrofola 64.3 9.6 0.00021 34.6 3.9 48 101-154 330-378 (396)
263 KOG4213 RNA-binding protein La 63.9 9.4 0.0002 32.2 3.5 58 101-162 111-169 (205)
264 PF10567 Nab6_mRNP_bdg: RNA-re 63.7 16 0.00036 33.5 5.3 80 275-354 15-107 (309)
265 COG4371 Predicted membrane pro 63.6 18 0.00039 32.3 5.3 12 397-408 55-66 (334)
266 KOG0262 RNA polymerase I, larg 62.8 7.1 0.00015 42.9 3.3 10 292-301 1542-1551(1640)
267 PF07423 DUF1510: Protein of u 62.1 7.9 0.00017 34.3 3.0 11 113-123 150-160 (217)
268 TIGR00927 2A1904 K+-dependent 61.8 3.5 7.6E-05 44.3 0.9 14 142-155 930-943 (1096)
269 PF02714 DUF221: Domain of unk 60.5 16 0.00034 35.0 5.1 57 146-204 1-57 (325)
270 PF03468 XS: XS domain; Inter 59.3 14 0.00031 29.2 3.7 51 103-156 10-69 (116)
271 TIGR00927 2A1904 K+-dependent 57.8 4.5 9.7E-05 43.5 0.9 9 103-111 906-914 (1096)
272 KOG0526 Nucleosome-binding fac 54.0 9.8 0.00021 37.9 2.4 7 108-114 534-540 (615)
273 KOG0020 Endoplasmic reticulum 53.5 47 0.001 33.0 6.8 24 101-125 336-359 (785)
274 PF15513 DUF4651: Domain of un 53.3 34 0.00073 23.5 4.2 18 116-133 9-26 (62)
275 KOG4008 rRNA processing protei 52.0 14 0.0003 32.7 2.7 37 96-132 35-71 (261)
276 KOG2773 Apoptosis antagonizing 52.0 8 0.00017 37.7 1.5 7 344-350 446-452 (483)
277 PF07423 DUF1510: Protein of u 51.2 11 0.00025 33.3 2.2 10 153-162 152-161 (217)
278 KOG2773 Apoptosis antagonizing 49.5 11 0.00023 36.8 1.9 8 284-291 390-397 (483)
279 PF07530 PRE_C2HC: Associated 49.3 55 0.0012 23.0 5.0 63 290-355 2-65 (68)
280 PRK14548 50S ribosomal protein 49.3 74 0.0016 23.5 5.8 56 104-162 23-80 (84)
281 PRK06958 single-stranded DNA-b 48.7 36 0.00078 29.3 4.7 11 276-286 6-16 (182)
282 KOG4264 Nucleo-cytoplasmic pro 48.6 18 0.00039 35.9 3.3 16 145-160 211-226 (694)
283 smart00596 PRE_C2HC PRE_C2HC d 48.5 45 0.00098 23.4 4.3 62 290-354 2-64 (69)
284 KOG4365 Uncharacterized conser 46.5 3.3 7.2E-05 39.8 -1.9 78 101-179 3-80 (572)
285 KOG4019 Calcineurin-mediated s 46.1 20 0.00044 30.4 2.8 75 102-182 11-91 (193)
286 KOG4008 rRNA processing protei 45.2 19 0.00041 31.9 2.6 35 273-307 38-72 (261)
287 PF14111 DUF4283: Domain of un 44.9 15 0.00032 30.5 1.9 96 112-214 28-137 (153)
288 COG5180 PBP1 Protein interacti 44.3 2.3E+02 0.0049 28.2 9.7 7 113-119 220-226 (654)
289 COG5193 LHP1 La protein, small 43.3 10 0.00022 36.4 0.7 61 101-161 174-244 (438)
290 KOG0650 WD40 repeat nucleolar 43.0 15 0.00032 37.3 1.7 12 102-113 119-130 (733)
291 PF15513 DUF4651: Domain of un 42.9 60 0.0013 22.3 4.1 21 289-309 8-28 (62)
292 PF09073 BUD22: BUD22; InterP 42.4 11 0.00023 37.8 0.7 23 326-348 408-430 (432)
293 KOG4264 Nucleo-cytoplasmic pro 41.8 17 0.00037 36.1 2.0 8 319-326 443-450 (694)
294 KOG1295 Nonsense-mediated deca 41.5 34 0.00074 32.8 3.8 67 276-342 8-77 (376)
295 KOG2147 Nucleolar protein invo 41.0 33 0.00071 35.9 3.9 18 109-126 388-409 (823)
296 PRK10590 ATP-dependent RNA hel 40.7 31 0.00066 34.9 3.8 8 148-155 128-135 (456)
297 COG4547 CobT Cobalamin biosynt 40.4 14 0.0003 36.2 1.1 10 167-176 425-434 (620)
298 KOG1980 Uncharacterized conser 39.2 21 0.00046 36.5 2.2 17 116-132 465-481 (754)
299 PF03276 Gag_spuma: Spumavirus 39.0 4.4E+02 0.0096 26.9 13.9 13 112-124 82-94 (582)
300 COG1512 Beta-propeller domains 38.7 39 0.00085 31.2 3.7 6 173-178 103-108 (271)
301 PRK05901 RNA polymerase sigma 38.7 17 0.00037 36.9 1.6 13 224-236 319-331 (509)
302 COG5638 Uncharacterized conser 38.7 1.1E+02 0.0024 29.6 6.6 80 273-352 144-295 (622)
303 TIGR03636 L23_arch archaeal ri 38.1 1.5E+02 0.0033 21.4 5.9 55 104-161 16-72 (77)
304 KOG4213 RNA-binding protein La 37.9 45 0.00097 28.3 3.6 68 276-348 112-180 (205)
305 KOG1295 Nonsense-mediated deca 37.5 31 0.00067 33.0 2.9 68 101-168 7-77 (376)
306 PF03896 TRAP_alpha: Transloco 36.8 12 0.00026 34.8 0.2 8 101-108 84-91 (285)
307 PF02714 DUF221: Domain of unk 36.2 38 0.00083 32.3 3.5 35 320-356 1-35 (325)
308 PF11823 DUF3343: Protein of u 35.9 1.5E+02 0.0032 21.0 5.7 62 144-207 2-64 (73)
309 PF03896 TRAP_alpha: Transloco 35.6 11 0.00023 35.1 -0.4 15 277-291 193-207 (285)
310 PF04050 Upf2: Up-frameshift s 35.6 14 0.0003 31.6 0.3 7 117-123 64-70 (170)
311 PTZ00191 60S ribosomal protein 33.1 1.6E+02 0.0035 24.2 6.0 54 278-334 84-139 (145)
312 COG5193 LHP1 La protein, small 32.8 20 0.00044 34.4 0.9 60 276-335 175-244 (438)
313 KOG4357 Uncharacterized conser 31.2 2.5E+02 0.0053 22.2 6.3 22 146-167 116-137 (164)
314 KOG2393 Transcription initiati 30.9 38 0.00082 34.0 2.4 21 278-298 476-496 (555)
315 PF04026 SpoVG: SpoVG; InterP 30.5 85 0.0018 23.2 3.7 26 127-152 2-27 (84)
316 PF03286 Pox_Ag35: Pox virus A 28.5 26 0.00055 30.6 0.8 7 157-163 172-178 (200)
317 PF03439 Spt5-NGN: Early trans 28.4 1.6E+02 0.0035 21.6 4.9 36 301-341 33-68 (84)
318 PF05470 eIF-3c_N: Eukaryotic 28.0 35 0.00076 35.5 1.8 10 327-336 516-525 (595)
319 COG4547 CobT Cobalamin biosynt 27.6 48 0.001 32.7 2.4 9 198-206 441-449 (620)
320 PF12782 Innate_immun: Inverte 27.6 3.2E+02 0.007 23.8 7.1 6 330-335 13-18 (311)
321 COG5593 Nucleic-acid-binding p 27.4 59 0.0013 32.7 3.1 22 102-123 799-820 (821)
322 COG5271 MDN1 AAA ATPase contai 27.4 47 0.001 39.1 2.6 15 145-160 4204-4218(4600)
323 KOG0299 U3 snoRNP-associated p 27.0 48 0.001 32.6 2.3 8 128-135 145-152 (479)
324 PF11823 DUF3343: Protein of u 27.0 78 0.0017 22.4 3.0 26 318-343 2-27 (73)
325 KOG2076 RNA polymerase III tra 26.8 72 0.0016 34.3 3.7 119 6-124 18-145 (895)
326 PF00403 HMA: Heavy-metal-asso 26.5 2E+02 0.0044 19.1 6.6 54 277-336 1-58 (62)
327 PF11532 HnRNP_M: Heterogeneou 26.4 25 0.00053 19.8 0.2 7 473-479 18-24 (30)
328 KOG0338 ATP-dependent RNA heli 26.1 29 0.00063 34.8 0.8 13 183-195 284-296 (691)
329 PRK13259 regulatory protein Sp 25.5 1.1E+02 0.0023 23.1 3.5 26 127-152 2-27 (94)
330 KOG1980 Uncharacterized conser 25.2 54 0.0012 33.8 2.4 8 108-115 482-489 (754)
331 PF05793 TFIIF_alpha: Transcri 25.0 24 0.00052 36.3 0.0 17 286-303 463-479 (527)
332 COG0445 GidA Flavin-dependent 25.0 2.4E+02 0.0052 29.1 6.8 91 226-324 237-342 (621)
333 PF11411 DNA_ligase_IV: DNA li 24.9 56 0.0012 19.6 1.5 16 111-126 19-34 (36)
334 PRK07772 single-stranded DNA-b 24.6 1.4E+02 0.003 25.9 4.6 11 276-286 6-16 (186)
335 PF08206 OB_RNB: Ribonuclease 23.9 31 0.00068 23.2 0.4 36 317-353 8-44 (58)
336 PF12782 Innate_immun: Inverte 23.8 4.4E+02 0.0095 23.0 7.2 8 399-406 70-77 (311)
337 PTZ00438 gamete antigen 27/25- 23.2 19 0.00041 32.3 -1.0 22 290-311 311-332 (374)
338 KOG0338 ATP-dependent RNA heli 22.3 44 0.00096 33.6 1.2 15 146-160 255-269 (691)
339 PF05793 TFIIF_alpha: Transcri 21.8 30 0.00066 35.5 0.0 13 286-298 477-489 (527)
340 KOG0772 Uncharacterized conser 21.7 59 0.0013 32.5 1.9 21 94-114 172-192 (641)
341 PRK02302 hypothetical protein; 21.7 2.9E+02 0.0062 20.7 5.0 62 121-192 22-83 (89)
342 KOG1307 K+-dependent Ca2+/Na+ 21.4 59 0.0013 32.2 1.8 74 2-75 310-383 (588)
343 PHA01632 hypothetical protein 20.8 1.1E+02 0.0023 20.3 2.3 21 104-124 19-39 (64)
344 TIGR01651 CobT cobaltochelatas 20.6 59 0.0013 33.5 1.7 11 289-299 542-552 (600)
345 cd04908 ACT_Bt0572_1 N-termina 20.4 2.9E+02 0.0063 18.7 8.3 49 288-341 14-63 (66)
346 PF01071 GARS_A: Phosphoribosy 20.1 3.8E+02 0.0083 23.4 6.4 47 114-164 25-71 (194)
No 1
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.3e-58 Score=419.99 Aligned_cols=319 Identities=39% Similarity=0.632 Sum_probs=270.0
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCcc-CCeEEE
Q 011693 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF-KGKKIR 174 (479)
Q Consensus 96 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~-~g~~i~ 174 (479)
..++..|.|||+.||.++.|++|.-+|++.|+|-+++|++|+.+|.+||||||+|+++++|++|++.||+.+| .|+.|.
T Consensus 78 ~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~ig 157 (506)
T KOG0117|consen 78 PPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLG 157 (506)
T ss_pred CCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeE
Confidence 3457899999999999999999999999999999999999999999999999999999999999999999998 499999
Q ss_pred EeecccccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCC
Q 011693 175 CSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGT 254 (479)
Q Consensus 175 v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~ 254 (479)
|..+..+++|||+|||+++++++|.+.+++.+++|..+.+..+.....+++|||||+|.++..|..|.++|....+.+-+
T Consensus 158 vc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwg 237 (506)
T KOG0117|consen 158 VCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWG 237 (506)
T ss_pred EEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecC
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred CCCeeeeCCCCCCCC-CCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHH
Q 011693 255 NAPTVSWADPRNVDS-SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333 (479)
Q Consensus 255 ~~~~~~~~~~~~~~~-~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A 333 (479)
+.+.|.||+|..... ......+.|||+||+.++|++.|+.+|++||.|.+|+.++| ||||+|.+.++|.+|
T Consensus 238 n~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkA 309 (506)
T KOG0117|consen 238 NAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKA 309 (506)
T ss_pred CcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHH
Confidence 999999999987766 34455689999999999999999999999999999999865 999999999999999
Q ss_pred HHHhCCceecCeEEEEEeccCCCccCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCC-CCCCcCCCCCCCCCC
Q 011693 334 LKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPS---LLQNYPPHIGYGLAGGTYGALGAG-FGAAAFAQPLVYGRG 409 (479)
Q Consensus 334 ~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~g~~g~g-~~~~~~~~~~~~g~g 409 (479)
++.+|++.|+|..|.|.+|+|...++..+...++..- ..+..++. -+--+...++..+++ .....+.+|++++.+
T Consensus 310 m~~~ngkeldG~~iEvtLAKP~~k~k~~r~~~~~g~~~~~~~~~~~p~-~~~~~~~~~g~~~~g~~~~~y~~~P~~y~~~ 388 (506)
T KOG0117|consen 310 MKETNGKELDGSPIEVTLAKPVDKKKKERKAMRQGGAYPTYYYFGPPV-FYAIPPAPRGAGRGGGSRAGYYSQPGMYGTG 388 (506)
T ss_pred HHHhcCceecCceEEEEecCChhhhccchhhhhccccCCCccccCCcc-cCCCCCCCcCcccCCCCccccccCCccccCc
Confidence 9999999999999999999998877665433222211 11111111 010001112222222 234455567777766
Q ss_pred CCCC----CCCCCCCCCC
Q 011693 410 ASPA----GMAMMPMLLP 423 (479)
Q Consensus 410 ~~~~----g~~~~p~~~~ 423 (479)
..+. ++.++|++.+
T Consensus 389 ~~~~~~~~~m~~~~~~l~ 406 (506)
T KOG0117|consen 389 HAPGLKGYGMHMAPGGLE 406 (506)
T ss_pred cccccccCCccccccccc
Confidence 6655 6777777755
No 2
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=3e-47 Score=375.92 Aligned_cols=252 Identities=35% Similarity=0.604 Sum_probs=228.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccC-CeEEEEe
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK-GKKIRCS 176 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~-g~~i~v~ 176 (479)
+...++|||+|||+++++++|+++|++||.|.+|+|++| .+++++|||||+|.+.++|++||+.||+..|. ++.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 345689999999999999999999999999999999999 78999999999999999999999999999985 8999999
Q ss_pred ecccccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCC
Q 011693 177 TSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNA 256 (479)
Q Consensus 177 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~ 256 (479)
.+..+++|||+|||.++++++|.+.|+.++..+..+.+.......+++++||||+|.+.++|..|+..|....+.+.++.
T Consensus 134 ~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~ 213 (578)
T TIGR01648 134 ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHV 213 (578)
T ss_pred ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCce
Confidence 99999999999999999999999999999876777766655456778999999999999999999999988778888999
Q ss_pred CeeeeCCCCCCCC-CCCccccEEEEcCCCCCCCHHHHHHHHhhc--CCeEEEEecCCCCCCCcccEEEEEeCChHHHHHH
Q 011693 257 PTVSWADPRNVDS-SGASQVKAVYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333 (479)
Q Consensus 257 ~~~~~~~~~~~~~-~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A 333 (479)
+.|.|+.+..... ......++|||+||++++|+++|+++|++| |.|++|.++ ++||||+|.+.++|.+|
T Consensus 214 I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 214 IAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKA 285 (578)
T ss_pred EEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHH
Confidence 9999998865443 223345899999999999999999999999 999999876 36999999999999999
Q ss_pred HHHhCCceecCeEEEEEeccCCCcc
Q 011693 334 LKNTEKYELDGQALECSLAKPQADQ 358 (479)
Q Consensus 334 ~~~l~~~~~~g~~l~v~~a~~~~~~ 358 (479)
|+.||+..|.|+.|+|+|+++....
T Consensus 286 i~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 286 MDELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HHHhCCCEECCEEEEEEEccCCCcc
Confidence 9999999999999999999887543
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1e-46 Score=366.50 Aligned_cols=255 Identities=20% Similarity=0.380 Sum_probs=229.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 180 (479)
.++|||+|||.++|+++|+++|+.||+|.+|+|++++.+|+++|||||+|.+.++|.+||+.|++..|.|+.|+|.++.+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred ------ccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCC
Q 011693 181 ------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGT 254 (479)
Q Consensus 181 ------~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~ 254 (479)
..+|||+|||..+++++|..+|+.||. |..+.++.+ ..++.+++||||+|.+.++|..|+..|++..+....
T Consensus 83 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~-i~~~~~~~~-~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~ 160 (352)
T TIGR01661 83 SSDSIKGANLYVSGLPKTMTQHELESIFSPFGQ-IITSRILSD-NVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCT 160 (352)
T ss_pred cccccccceEEECCccccCCHHHHHHHHhccCC-EEEEEEEec-CCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCc
Confidence 457999999999999999999999999 889999888 668899999999999999999999999998766555
Q ss_pred CCCeeeeCCCCCCCC-----------------------------------------------------------------
Q 011693 255 NAPTVSWADPRNVDS----------------------------------------------------------------- 269 (479)
Q Consensus 255 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 269 (479)
..+.+.|+..+....
T Consensus 161 ~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (352)
T TIGR01661 161 EPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHA 240 (352)
T ss_pred eeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccc
Confidence 667777765332100
Q ss_pred -----------------------CCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCC
Q 011693 270 -----------------------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326 (479)
Q Consensus 270 -----------------------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~ 326 (479)
.....+.+|||+|||+++++++|+++|++||.|.+|+|+.+..++.+||||||+|.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~ 320 (352)
T TIGR01661 241 AQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTN 320 (352)
T ss_pred cccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECC
Confidence 001112369999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCceecCeEEEEEeccCCCc
Q 011693 327 RSSAMKALKNTEKYELDGQALECSLAKPQAD 357 (479)
Q Consensus 327 ~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 357 (479)
.++|.+||..|||..|+||.|+|.|+..+..
T Consensus 321 ~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 321 YDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 9999999999999999999999999987653
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=2e-42 Score=355.30 Aligned_cols=252 Identities=27% Similarity=0.453 Sum_probs=221.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecccc-
Q 011693 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK- 181 (479)
Q Consensus 103 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~- 181 (479)
+|||+|||.++|+++|+++|++||.|.+|+|++|..|++++|||||+|.+.++|.+||+.+++..|.|+.|+|.++...
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999765310
Q ss_pred --------------------------------------------------------------------------------
Q 011693 182 -------------------------------------------------------------------------------- 181 (479)
Q Consensus 182 -------------------------------------------------------------------------------- 181 (479)
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v 161 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYV 161 (562)
T ss_pred cccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEE
Confidence
Q ss_pred -----------------cccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHh
Q 011693 182 -----------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQK 244 (479)
Q Consensus 182 -----------------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 244 (479)
.+|||+||+.++++++|+++|+.||. |..+.++.+ .+++++|||||+|.+.++|.+|+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~-i~~~~i~~~--~~g~~~G~afV~F~~~e~A~~Av~~ 238 (562)
T TIGR01628 162 GRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGE-ITSAAVMKD--GSGRSRGFAFVNFEKHEDAAKAVEE 238 (562)
T ss_pred eccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCC-EEEEEEEEC--CCCCcccEEEEEECCHHHHHHHHHH
Confidence 12788888888999999999999988 888888877 5788999999999999999999999
Q ss_pred ccCCCcccC--CCCCeeeeCCCCCCCC--------------CCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEec
Q 011693 245 MTNPNFKLG--TNAPTVSWADPRNVDS--------------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVP 308 (479)
Q Consensus 245 ~~~~~~~~~--~~~~~~~~~~~~~~~~--------------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~ 308 (479)
+++..+... +..+.+.++..+.... .......+|||+||+.++|+++|+++|++||.|++|+|+
T Consensus 239 l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~ 318 (562)
T TIGR01628 239 MNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVM 318 (562)
T ss_pred hCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEE
Confidence 998765422 6677777776554331 113345789999999999999999999999999999999
Q ss_pred CCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccCCCcc
Q 011693 309 PAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQ 358 (479)
Q Consensus 309 ~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 358 (479)
.+ .++.++|||||+|.+.++|.+|+..||+..|.|++|.|.+|.++..+
T Consensus 319 ~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~ 367 (562)
T TIGR01628 319 LD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQR 367 (562)
T ss_pred EC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHH
Confidence 99 55666999999999999999999999999999999999999887654
No 5
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=5.8e-42 Score=290.09 Aligned_cols=253 Identities=22% Similarity=0.395 Sum_probs=230.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 180 (479)
.+.|.|.=||..+|+++|+.+|...|+|++|++++|+-+|.+.||+||.|.++++|++|+..|||..+..++|+|+++++
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP 120 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c------cccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCC
Q 011693 181 K------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGT 254 (479)
Q Consensus 181 ~------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~ 254 (479)
. ..|||++||+.++..+|..+|++||. |.-.+++.+ .-++.++|.+||.|..+..|+.|++.|++.......
T Consensus 121 Ss~~Ik~aNLYvSGlPktMtqkelE~iFs~fGr-IItSRiL~d-qvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~t 198 (360)
T KOG0145|consen 121 SSDSIKDANLYVSGLPKTMTQKELEQIFSPFGR-IITSRILVD-QVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCT 198 (360)
T ss_pred ChhhhcccceEEecCCccchHHHHHHHHHHhhh-hhhhhhhhh-cccceecceeEEEecchhHHHHHHHhccCCCCCCCC
Confidence 5 57999999999999999999999999 666666666 578999999999999999999999999999888888
Q ss_pred CCCeeeeCCCCCCCC-----------------------------------------------------------CCCccc
Q 011693 255 NAPTVSWADPRNVDS-----------------------------------------------------------SGASQV 275 (479)
Q Consensus 255 ~~~~~~~~~~~~~~~-----------------------------------------------------------~~~~~~ 275 (479)
.++.|+++..+.... ......
T Consensus 199 epItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g 278 (360)
T KOG0145|consen 199 EPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGG 278 (360)
T ss_pred CCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCe
Confidence 888888886542211 000014
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccCC
Q 011693 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 355 (479)
.||||-||.+++++.-|+++|.+||.|.+|+|++|..+.++|||+||++.+.++|..||..|||..+.+|.|.|+|...+
T Consensus 279 ~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 279 WCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred eEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999997654
No 6
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.7e-40 Score=278.51 Aligned_cols=225 Identities=23% Similarity=0.446 Sum_probs=192.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHH-HhCCCccCCeEEEEeec
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID-KLNNTEFKGKKIRCSTS 178 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~-~~~~~~~~g~~i~v~~~ 178 (479)
..+||||+||..++||+-|..||+++|.|+.|+|+.+.. + | ..|.. ....+....+
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~-~-------v--------~wa~~p~nQsk~t~~~------- 61 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEL-K-------V--------NWATAPGNQSKPTSNQ------- 61 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehhhh-c-------c--------ccccCcccCCCCcccc-------
Confidence 468999999999999999999999999999999998721 0 0 00100 0011111111
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCe
Q 011693 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT 258 (479)
Q Consensus 179 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 258 (479)
--.+||+.|...++.+.|++.|.+||+ |+++++++| ..++++|||+||.|-++.+|+.||..|++. .++.+.++
T Consensus 62 --hfhvfvgdls~eI~~e~lr~aF~pFGe-vS~akvirD-~~T~KsKGYgFVSf~~k~dAEnAI~~MnGq--WlG~R~IR 135 (321)
T KOG0148|consen 62 --HFHVFVGDLSPEIDNEKLREAFAPFGE-VSDAKVIRD-MNTGKSKGYGFVSFPNKEDAENAIQQMNGQ--WLGRRTIR 135 (321)
T ss_pred --ceeEEehhcchhcchHHHHHHhccccc-cccceEeec-ccCCcccceeEEeccchHHHHHHHHHhCCe--eeccceee
Confidence 234699999999999999999999999 999999999 899999999999999999999999999997 56899999
Q ss_pred eeeCCCCCCCC------------CCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCC
Q 011693 259 VSWADPRNVDS------------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326 (479)
Q Consensus 259 ~~~~~~~~~~~------------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~ 326 (479)
-+|+..+.... +.....++|||+||+..+|+++|++.|++||.|.+|+|++++ ||+||.|++
T Consensus 136 TNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~t 209 (321)
T KOG0148|consen 136 TNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFET 209 (321)
T ss_pred ccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecc
Confidence 99998775332 445557999999999999999999999999999999999995 999999999
Q ss_pred hHHHHHHHHHhCCceecCeEEEEEeccCCCccC
Q 011693 327 RSSAMKALKNTEKYELDGQALECSLAKPQADQK 359 (479)
Q Consensus 327 ~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~ 359 (479)
.|.|.+||..+|+..|.|..++|.|.+......
T Consensus 210 kEaAahAIv~mNntei~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 210 KEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGI 242 (321)
T ss_pred hhhHHHHHHHhcCceeCceEEEEeccccCCCCC
Confidence 999999999999999999999999998766543
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=9.5e-38 Score=312.31 Aligned_cols=239 Identities=21% Similarity=0.288 Sum_probs=204.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHh--CCCccCCeEEEEeec
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL--NNTEFKGKKIRCSTS 178 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~--~~~~~~g~~i~v~~~ 178 (479)
+++|||+|||+++|+++|+++|++||.|.+|+|+++ ++||||+|.+.++|.+|++.+ ++..|.|+.|.|.++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 689999999999999999999999999999999863 689999999999999999864 778999999999887
Q ss_pred ccc------------------cccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHH
Q 011693 179 QAK------------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEY 240 (479)
Q Consensus 179 ~~~------------------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 240 (479)
... ..|+|.||+..++++.|+++|+.||. |..+.++++ . ..++|||+|.+.++|.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~-V~~v~i~~~-~----~~~~afVef~~~~~A~~ 149 (481)
T TIGR01649 76 TSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGK-VLRIVTFTK-N----NVFQALVEFESVNSAQH 149 (481)
T ss_pred CCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCC-EEEEEEEec-C----CceEEEEEECCHHHHHH
Confidence 421 15899999999999999999999999 999988765 1 24689999999999999
Q ss_pred HHHhccCCCcccCCCCCeeeeCCCCCCC----------------------------------------------------
Q 011693 241 SRQKMTNPNFKLGTNAPTVSWADPRNVD---------------------------------------------------- 268 (479)
Q Consensus 241 a~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------- 268 (479)
|++.|++..+..+.+.+.+.|+.+....
T Consensus 150 A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 229 (481)
T TIGR01649 150 AKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHG 229 (481)
T ss_pred HHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCC
Confidence 9999999987655455555544321100
Q ss_pred ---------------------------------------CCCCccccEEEEcCCCC-CCCHHHHHHHHhhcCCeEEEEec
Q 011693 269 ---------------------------------------SSGASQVKAVYVKNLPR-NVTQDQLKKLFEHHGRITKVVVP 308 (479)
Q Consensus 269 ---------------------------------------~~~~~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~v~~v~i~ 308 (479)
.....++++|||+|||+ .+|+++|+++|+.||.|.+|+|+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~ 309 (481)
T TIGR01649 230 GPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFM 309 (481)
T ss_pred CCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEE
Confidence 00012457999999998 69999999999999999999999
Q ss_pred CCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccCCC
Q 011693 309 PAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA 356 (479)
Q Consensus 309 ~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 356 (479)
+++ +|||||+|.+.++|..||..||+..|.|++|+|.+++...
T Consensus 310 ~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~ 352 (481)
T TIGR01649 310 KNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQN 352 (481)
T ss_pred eCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccccc
Confidence 875 7999999999999999999999999999999999986654
No 8
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.9e-37 Score=287.34 Aligned_cols=251 Identities=25% Similarity=0.493 Sum_probs=224.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 180 (479)
..||||++||++++.++|.++|+.+|+|..|.++.++.++.++||+||+|.-.+++++|++.+++..|.||.|.|..+..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999987652
Q ss_pred --------------------------------ccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEE
Q 011693 181 --------------------------------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFA 228 (479)
Q Consensus 181 --------------------------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~ 228 (479)
+.+|.|+|||+.+...+|..+|+.||. |.+|.|.+. ..++-.|||
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~-V~Ei~IP~k--~dgklcGFa 161 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGK-VVEIVIPRK--KDGKLCGFA 161 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcce-EEEEEcccC--CCCCccceE
Confidence 246999999999999999999999999 999999854 666666999
Q ss_pred EEEeCCHhHHHHHHHhccCCCcccCCCCCeeeeCCCCCCCCCC-------------------------------------
Q 011693 229 FIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSG------------------------------------- 271 (479)
Q Consensus 229 fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------- 271 (479)
||.|....+|..|+..+++. .+.++++.|.||-++..-...
T Consensus 162 FV~fk~~~dA~~Al~~~N~~--~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~ 239 (678)
T KOG0127|consen 162 FVQFKEKKDAEKALEFFNGN--KIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDS 239 (678)
T ss_pred EEEEeeHHHHHHHHHhccCc--eecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccc
Confidence 99999999999999999976 678999999998654211100
Q ss_pred -------------------------------------------------CccccEEEEcCCCCCCCHHHHHHHHhhcCCe
Q 011693 272 -------------------------------------------------ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRI 302 (479)
Q Consensus 272 -------------------------------------------------~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v 302 (479)
.....+|||+|||+++|++.|.++|++||.|
T Consensus 240 edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v 319 (678)
T KOG0127|consen 240 EDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEV 319 (678)
T ss_pred cccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccc
Confidence 0002799999999999999999999999999
Q ss_pred EEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhC-----C-ceecCeEEEEEeccCCC
Q 011693 303 TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE-----K-YELDGQALECSLAKPQA 356 (479)
Q Consensus 303 ~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~-----~-~~~~g~~l~v~~a~~~~ 356 (479)
..+.|+.++.++.++|.|||.|.+..+|..||.... + ..|.||.|.|..|-++.
T Consensus 320 ~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 320 KYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRK 379 (678)
T ss_pred eeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchH
Confidence 999999999999999999999999999999999862 3 67899999999997654
No 9
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=4.1e-36 Score=301.98 Aligned_cols=250 Identities=22% Similarity=0.403 Sum_probs=215.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
....++|||+|||+++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+|| .|++..|.|+.|.|..
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEee
Confidence 345789999999999999999999999999999999999999999999999999999999999 5999999999999977
Q ss_pred ccc------------------ccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHH
Q 011693 178 SQA------------------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAE 239 (479)
Q Consensus 178 ~~~------------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 239 (479)
+.. ..+|||+|||..+++++|.++|+.||. |..+.++.+ ..++++++||||+|.+.++|.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~-i~~v~~~~d-~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGD-IEDVQLHRD-PETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCC-eEEEEEEEc-CCCCccceEEEEEECCHHHHH
Confidence 532 257999999999999999999999999 999999988 677899999999999999999
Q ss_pred HHHHhccCCCcccCCCCCeeeeCCCCCCC---------------------------------------------------
Q 011693 240 YSRQKMTNPNFKLGTNAPTVSWADPRNVD--------------------------------------------------- 268 (479)
Q Consensus 240 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------- 268 (479)
+|+..|++ +.+.++.+.|.|+......
T Consensus 243 ~A~~~l~g--~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (457)
T TIGR01622 243 EALEVMNG--FELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIA 320 (457)
T ss_pred HHHHhcCC--cEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhh
Confidence 99999998 4557788888874311000
Q ss_pred ---------------------------------C--CCCccccEEEEcCCCCCCC----------HHHHHHHHhhcCCeE
Q 011693 269 ---------------------------------S--SGASQVKAVYVKNLPRNVT----------QDQLKKLFEHHGRIT 303 (479)
Q Consensus 269 ---------------------------------~--~~~~~~~~l~V~nLp~~~t----------~~~l~~~F~~~G~v~ 303 (479)
. .....+.+|+|.||....+ .++|++.|++||.|+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~ 400 (457)
T TIGR01622 321 LMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVV 400 (457)
T ss_pred hhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCee
Confidence 0 0113468899999955443 368999999999999
Q ss_pred EEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccCCC
Q 011693 304 KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA 356 (479)
Q Consensus 304 ~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 356 (479)
.|.|.... ..|++||+|.++++|.+|++.|||..|+|+.|.|.+.....
T Consensus 401 ~v~v~~~~----~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~ 449 (457)
T TIGR01622 401 HIYVDTKN----SAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVNDV 449 (457)
T ss_pred EEEEeCCC----CceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHHH
Confidence 99997432 36999999999999999999999999999999999986543
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=2.6e-36 Score=284.81 Aligned_cols=173 Identities=26% Similarity=0.459 Sum_probs=156.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
....++|||+|||+++|+++|+++|+.||+|++|+|++|+.|++++|||||+|.+.++|.+||+.|++..|.+++|+|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCC
Q 011693 178 SQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP 257 (479)
Q Consensus 178 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~ 257 (479)
+.+...
T Consensus 184 a~p~~~-------------------------------------------------------------------------- 189 (346)
T TIGR01659 184 ARPGGE-------------------------------------------------------------------------- 189 (346)
T ss_pred cccccc--------------------------------------------------------------------------
Confidence 643100
Q ss_pred eeeeCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHh
Q 011693 258 TVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337 (479)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l 337 (479)
....++|||+|||+++|+++|+++|++||.|+.|+|++++.++.++|||||+|.+.++|++||+.|
T Consensus 190 --------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l 255 (346)
T TIGR01659 190 --------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISAL 255 (346)
T ss_pred --------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 001168999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceecC--eEEEEEeccCCCcc
Q 011693 338 EKYELDG--QALECSLAKPQADQ 358 (479)
Q Consensus 338 ~~~~~~g--~~l~v~~a~~~~~~ 358 (479)
|+..|.+ ++|+|.++......
T Consensus 256 ng~~~~g~~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 256 NNVIPEGGSQPLTVRLAEEHGKA 278 (346)
T ss_pred CCCccCCCceeEEEEECCccccc
Confidence 9998876 78999999876543
No 11
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.6e-36 Score=273.56 Aligned_cols=253 Identities=21% Similarity=0.425 Sum_probs=226.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCc-cCC--eEEEEee
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE-FKG--KKIRCST 177 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~-~~g--~~i~v~~ 177 (479)
.-+|||+-||..++|.+|+.+|++||.|.+|.|++|+.|+.++|||||+|.+.++|.+|+.+||+.. |-| ..|.|++
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 4579999999999999999999999999999999999999999999999999999999999998775 433 6788888
Q ss_pred ccc-------ccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCc
Q 011693 178 SQA-------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF 250 (479)
Q Consensus 178 ~~~-------~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~ 250 (479)
++. .++|||+-|++.+++.+++++|++||- |++|.|+++ ..+.+|||+||.|.+++.|..|++.|++...
T Consensus 114 Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~-Ied~~ilrd--~~~~sRGcaFV~fstke~A~~Aika~ng~~t 190 (510)
T KOG0144|consen 114 ADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGH-IEDCYILRD--PDGLSRGCAFVKFSTKEMAVAAIKALNGTQT 190 (510)
T ss_pred cchhhhccccchhhhhhhccccccHHHHHHHHHhhCc-cchhhheec--ccccccceeEEEEehHHHHHHHHHhhcccee
Confidence 864 467899999999999999999999999 999999998 8899999999999999999999999998754
Q ss_pred cc-CCCCCeeeeCCCCCCCCCCCcc-------------------------------------------------------
Q 011693 251 KL-GTNAPTVSWADPRNVDSSGASQ------------------------------------------------------- 274 (479)
Q Consensus 251 ~~-~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------- 274 (479)
.- ...++.|+|+++..........
T Consensus 191 meGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~ 270 (510)
T KOG0144|consen 191 MEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLN 270 (510)
T ss_pred eccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcc
Confidence 43 4567888888865332100000
Q ss_pred --------------------------------------------------------------------------------
Q 011693 275 -------------------------------------------------------------------------------- 274 (479)
Q Consensus 275 -------------------------------------------------------------------------------- 274 (479)
T Consensus 271 a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~ 350 (510)
T KOG0144|consen 271 ATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGG 350 (510)
T ss_pred hhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccc
Confidence
Q ss_pred -------------------------------------------------------------------------ccEEEEc
Q 011693 275 -------------------------------------------------------------------------VKAVYVK 281 (479)
Q Consensus 275 -------------------------------------------------------------------------~~~l~V~ 281 (479)
...|||.
T Consensus 351 ~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiy 430 (510)
T KOG0144|consen 351 MAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIY 430 (510)
T ss_pred cccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeee
Confidence 3689999
Q ss_pred CCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccCCC
Q 011693 282 NLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA 356 (479)
Q Consensus 282 nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 356 (479)
+||.+.-+.+|...|..||.|.+.++..|+.++.++.|+||.|++..+|..||..||++.|+.++|+|.+...+.
T Consensus 431 hlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~ 505 (510)
T KOG0144|consen 431 HLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRN 505 (510)
T ss_pred eCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998876554
No 12
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=2e-34 Score=288.36 Aligned_cols=240 Identities=18% Similarity=0.258 Sum_probs=202.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCC--eEEEEeec
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG--KKIRCSTS 178 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g--~~i~v~~~ 178 (479)
-.+|||.||++.+|+++|+++|+.||.|.+|.|+++.. +++|||+|.+.++|.+|++.||+..|.+ +.|+|.++
T Consensus 96 ~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~s 171 (481)
T TIGR01649 96 VLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYA 171 (481)
T ss_pred eEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEe
Confidence 45799999999999999999999999999999987642 4789999999999999999999999965 35666443
Q ss_pred c-------------------------------------------------------------------------------
Q 011693 179 Q------------------------------------------------------------------------------- 179 (479)
Q Consensus 179 ~------------------------------------------------------------------------------- 179 (479)
.
T Consensus 172 k~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (481)
T TIGR01649 172 KPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRY 251 (481)
T ss_pred cCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCC
Confidence 2
Q ss_pred ----------------------cccccccCCCCC-CCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHh
Q 011693 180 ----------------------AKYRLFIGNIPR-NWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHK 236 (479)
Q Consensus 180 ----------------------~~~~l~v~~l~~-~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~ 236 (479)
+...|||+||+. .+++++|.++|+.||. |..++++.+ .++||||+|.+.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~-V~~vki~~~------~~g~afV~f~~~~ 324 (481)
T TIGR01649 252 RPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGN-VERVKFMKN------KKETALIEMADPY 324 (481)
T ss_pred cccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCC-eEEEEEEeC------CCCEEEEEECCHH
Confidence 113689999998 6999999999999999 999999886 3699999999999
Q ss_pred HHHHHHHhccCCCcccCCCCCeeeeCCCCCCCC---------------------------------CCCccccEEEEcCC
Q 011693 237 CAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS---------------------------------SGASQVKAVYVKNL 283 (479)
Q Consensus 237 ~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~l~V~nL 283 (479)
+|..|+..|++.. +.++.+.|.++....... ....++.+|||+||
T Consensus 325 ~A~~Ai~~lng~~--l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NL 402 (481)
T TIGR01649 325 QAQLALTHLNGVK--LFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNI 402 (481)
T ss_pred HHHHHHHHhCCCE--ECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecC
Confidence 9999999999864 467788887764321100 00134679999999
Q ss_pred CCCCCHHHHHHHHhhcCC--eEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeE------EEEEeccCC
Q 011693 284 PRNVTQDQLKKLFEHHGR--ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQA------LECSLAKPQ 355 (479)
Q Consensus 284 p~~~t~~~l~~~F~~~G~--v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~------l~v~~a~~~ 355 (479)
|.++|+++|+++|+.||. |+.|++...+.+ ++++|||+|.+.++|..||..||++.|.++. |+|++++++
T Consensus 403 p~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~--~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 403 PLSVSEEDLKELFAENGVHKVKKFKFFPKDNE--RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCCCCHHHHHHHHHhcCCccceEEEEecCCCC--cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 999999999999999998 889998765533 3689999999999999999999999999885 999999765
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=1.5e-34 Score=294.85 Aligned_cols=245 Identities=24% Similarity=0.438 Sum_probs=202.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhc------------CCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCc
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSI------------GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE 167 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~------------G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~ 167 (479)
..++|||+|||+++|+++|++||..| +.|..+.+ .+.+|||||+|.+.++|..|| .|++..
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al-~l~g~~ 246 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM-ALDSII 246 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-cCCCeE
Confidence 46789999999999999999999985 23444444 346899999999999999999 699999
Q ss_pred cCCeEEEEeecc-----------------------------------cccccccCCCCCCCCHHHHHHHHHhhCCCeeEE
Q 011693 168 FKGKKIRCSTSQ-----------------------------------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGV 212 (479)
Q Consensus 168 ~~g~~i~v~~~~-----------------------------------~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~ 212 (479)
|.|+.|+|.... ...+|||+|||..+++++|.++|+.||. |..+
T Consensus 247 ~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~~ 325 (509)
T TIGR01642 247 YSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGD-LKAF 325 (509)
T ss_pred eeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eeEE
Confidence 999999996321 1257999999999999999999999999 9999
Q ss_pred EEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCeeeeCCCCCCCC-----------------------
Q 011693 213 ELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS----------------------- 269 (479)
Q Consensus 213 ~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 269 (479)
.++.+ ..++.++|||||+|.+.++|..|+..|++.. +.++.|.|.++.......
T Consensus 326 ~~~~~-~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~--~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (509)
T TIGR01642 326 NLIKD-IATGLSKGYAFCEYKDPSVTDVAIAALNGKD--TGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSIL 402 (509)
T ss_pred EEEec-CCCCCcCeEEEEEECCHHHHHHHHHHcCCCE--ECCeEEEEEECccCCCCCCccccccccccccccccchhhhc
Confidence 99988 6789999999999999999999999999764 466677777764321110
Q ss_pred -CCCccccEEEEcCCCCCC----------CHHHHHHHHhhcCCeEEEEecCCC---CCCCcccEEEEEeCChHHHHHHHH
Q 011693 270 -SGASQVKAVYVKNLPRNV----------TQDQLKKLFEHHGRITKVVVPPAK---PGQEKNRIGFVHFAERSSAMKALK 335 (479)
Q Consensus 270 -~~~~~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~v~~v~i~~~~---~~~~~~G~afV~F~~~~~A~~A~~ 335 (479)
....++.+|+|.||.... ..++|+++|++||.|++|+|+++. .....+|++||+|.+.++|++||.
T Consensus 403 ~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~ 482 (509)
T TIGR01642 403 QIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAME 482 (509)
T ss_pred cccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHH
Confidence 012356889999996421 236899999999999999998753 234457999999999999999999
Q ss_pred HhCCceecCeEEEEEeccCC
Q 011693 336 NTEKYELDGQALECSLAKPQ 355 (479)
Q Consensus 336 ~l~~~~~~g~~l~v~~a~~~ 355 (479)
.|||..|+|+.|.|.|....
T Consensus 483 ~lnGr~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 483 GMNGRKFNDRVVVAAFYGED 502 (509)
T ss_pred HcCCCEECCeEEEEEEeCHH
Confidence 99999999999999997653
No 14
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=4.5e-34 Score=282.66 Aligned_cols=148 Identities=21% Similarity=0.441 Sum_probs=138.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeec
Q 011693 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 178 (479)
...++|||+|||+++|+++|+++|++||.|.+|+|+.|+.|++++|||||+|.+.++|.+|++.||+..|.||.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred cc-----------------ccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHH
Q 011693 179 QA-----------------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYS 241 (479)
Q Consensus 179 ~~-----------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 241 (479)
.. ..+|||+||+.++++++|+++|+.||. |..+++.++ ..+++++|||||+|.+.++|.+|
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~-I~svrl~~D-~~tgksKGfGFVeFe~~e~A~kA 262 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE-IVKCQLARA-PTGRGHKGYGFIEYNNLQSQSEA 262 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCC-eeEEEEEec-CCCCCcCCeEEEEECCHHHHHHH
Confidence 32 257999999999999999999999999 999999998 66889999999999999999999
Q ss_pred HHhccCC
Q 011693 242 RQKMTNP 248 (479)
Q Consensus 242 ~~~~~~~ 248 (479)
+..|++.
T Consensus 263 I~amNg~ 269 (612)
T TIGR01645 263 IASMNLF 269 (612)
T ss_pred HHHhCCC
Confidence 9999854
No 15
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=9.6e-31 Score=248.05 Aligned_cols=240 Identities=27% Similarity=0.427 Sum_probs=216.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecccc
Q 011693 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (479)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~ 181 (479)
..|||+ +++|+..|.++|+.+|+|++|++++|. | +.|||||.|.++++|.+||+++|...|.|+.|+|.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 368999 999999999999999999999999998 6 9999999999999999999999999999999999999865
Q ss_pred c-ccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCeee
Q 011693 182 Y-RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVS 260 (479)
Q Consensus 182 ~-~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 260 (479)
. .+||.||++.++...|.++|+.||. |.+|++..+ ..| ++|| ||+|.+.+.|.+|+..+++. .+.++.+.+.
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~-ilS~kv~~~--~~g-~kg~-FV~f~~e~~a~~ai~~~ng~--ll~~kki~vg 148 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGN-ILSCKVATD--ENG-SKGY-FVQFESEESAKKAIEKLNGM--LLNGKKIYVG 148 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcC-eeEEEEEEc--CCC-ceee-EEEeCCHHHHHHHHHHhcCc--ccCCCeeEEe
Confidence 3 4899999999999999999999999 999999998 333 9999 99999999999999999986 4566777776
Q ss_pred eCCCCCCCCC----CCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHH
Q 011693 261 WADPRNVDSS----GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (479)
Q Consensus 261 ~~~~~~~~~~----~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~ 336 (479)
....+..... ....-+.++|.|++.+++++.|..+|..+|.|.++.++.+..+. +++|+||.|.++++|..|+..
T Consensus 149 ~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~-~~~~gfv~f~~~e~a~~av~~ 227 (369)
T KOG0123|consen 149 LFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGK-SKGFGFVNFENPEDAKKAVET 227 (369)
T ss_pred eccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCC-CCCccceeecChhHHHHHHHh
Confidence 6665443321 23445789999999999999999999999999999999998887 589999999999999999999
Q ss_pred hCCceecCeEEEEEeccCC
Q 011693 337 TEKYELDGQALECSLAKPQ 355 (479)
Q Consensus 337 l~~~~~~g~~l~v~~a~~~ 355 (479)
||+..+.+..+.|..+..+
T Consensus 228 l~~~~~~~~~~~V~~aqkk 246 (369)
T KOG0123|consen 228 LNGKIFGDKELYVGRAQKK 246 (369)
T ss_pred ccCCcCCccceeecccccc
Confidence 9999999999999888763
No 16
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.6e-30 Score=245.11 Aligned_cols=249 Identities=27% Similarity=0.457 Sum_probs=218.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 180 (479)
.+.|||.||+.++|..+|.++|+.||.|++|++.++.. | ++|| ||+|.+.++|++|++.+|+..+.++.|.|.....
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 34499999999999999999999999999999999974 5 9999 9999999999999999999999999999976554
Q ss_pred c--------------cccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhcc
Q 011693 181 K--------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMT 246 (479)
Q Consensus 181 ~--------------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~ 246 (479)
+ ..+++.+++.+.+...|..+|..+|. |..+.++.+ ..+++++|+||.|.+.++|..|+..++
T Consensus 153 ~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~-i~s~~v~~~--~~g~~~~~gfv~f~~~e~a~~av~~l~ 229 (369)
T KOG0123|consen 153 KEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGS-ITSVAVMRD--SIGKSKGFGFVNFENPEDAKKAVETLN 229 (369)
T ss_pred hhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCc-ceEEEEeec--CCCCCCCccceeecChhHHHHHHHhcc
Confidence 2 45789999999999999999999999 999999998 677799999999999999999999999
Q ss_pred CCCcccCCCCCeeeeCCCCCCCC--------------CCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCC
Q 011693 247 NPNFKLGTNAPTVSWADPRNVDS--------------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKP 312 (479)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~ 312 (479)
+..+. ...+.|..+....... ........|||.||+..++.+.|+.+|+.||.|++++|+.+..
T Consensus 230 ~~~~~--~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~ 307 (369)
T KOG0123|consen 230 GKIFG--DKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDEN 307 (369)
T ss_pred CCcCC--ccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEeccC
Confidence 87664 4445555544421111 2234468999999999999999999999999999999999977
Q ss_pred CCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccCCCcc
Q 011693 313 GQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQ 358 (479)
Q Consensus 313 ~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 358 (479)
+.. +||+||.|.+.++|.+|+..+|+..+.+++|.|.++.....+
T Consensus 308 g~s-kG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r 352 (369)
T KOG0123|consen 308 GKS-KGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDR 352 (369)
T ss_pred CCc-cceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccc
Confidence 766 899999999999999999999999999999999999855444
No 17
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=5.1e-30 Score=239.16 Aligned_cols=234 Identities=25% Similarity=0.378 Sum_probs=194.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 180 (479)
..+|.|+||||.|...+|+.+|+.||.|.+|.|.+.++++.. |||||+|....+|.+||+.+|+..|.||+|-|.|+.+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 678999999999999999999999999999999988765554 9999999999999999999999999999999998852
Q ss_pred c-------------------------------------------------------------------------------
Q 011693 181 K------------------------------------------------------------------------------- 181 (479)
Q Consensus 181 ~------------------------------------------------------------------------------- 181 (479)
+
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 2
Q ss_pred -----------------cccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHh
Q 011693 182 -----------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQK 244 (479)
Q Consensus 182 -----------------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 244 (479)
.+|||+|||++++++.|.+.|+.||+ |..+.++.+ +.+++++|+|||.|.+...|..||..
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~-v~ya~iV~~-k~T~~skGtAFv~Fkt~~~~~~ci~~ 353 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGE-VKYAIIVKD-KDTGHSKGTAFVKFKTQIAAQNCIEA 353 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhcc-ceeEEEEec-cCCCCcccceEEEeccHHHHHHHHHh
Confidence 46999999999999999999999999 999999999 89999999999999999999999998
Q ss_pred cc----CCCcccCCCCCeeeeCCCCCCCC---------------------------------------------------
Q 011693 245 MT----NPNFKLGTNAPTVSWADPRNVDS--------------------------------------------------- 269 (479)
Q Consensus 245 ~~----~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------- 269 (479)
.. ...+.+.++.+.|..+-++....
T Consensus 354 Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k~ 433 (678)
T KOG0127|consen 354 ASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERKR 433 (678)
T ss_pred cCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHHH
Confidence 83 22366778888877766542211
Q ss_pred ------CCCccccEEEEcCCCCCCCHHHHHHHHhhc-----CC-eEEEEecCCC---CCCCcccEEEEEeCChHHHHHHH
Q 011693 270 ------SGASQVKAVYVKNLPRNVTQDQLKKLFEHH-----GR-ITKVVVPPAK---PGQEKNRIGFVHFAERSSAMKAL 334 (479)
Q Consensus 270 ------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~-----G~-v~~v~i~~~~---~~~~~~G~afV~F~~~~~A~~A~ 334 (479)
......++|.|+|||..++...|..+.... +. +..|+.+... ..+.+.||+||.|..++.|.+|+
T Consensus 434 k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalkal 513 (678)
T KOG0127|consen 434 KKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKAL 513 (678)
T ss_pred HhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccHHHHHHHhh
Confidence 001114789999999999999998888553 12 2234444333 23455899999999999999999
Q ss_pred HHh
Q 011693 335 KNT 337 (479)
Q Consensus 335 ~~l 337 (479)
+.+
T Consensus 514 k~~ 516 (678)
T KOG0127|consen 514 KVL 516 (678)
T ss_pred hcc
Confidence 865
No 18
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=7.9e-28 Score=213.79 Aligned_cols=248 Identities=19% Similarity=0.387 Sum_probs=203.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 180 (479)
-|+|||+.|.+.+.++.|+..|..||+|++|.+--|+.|++++|||||+|.-++.|..|++.+|+..+.||.|+|....+
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999976542
Q ss_pred -----------------ccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHH
Q 011693 181 -----------------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243 (479)
Q Consensus 181 -----------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 243 (479)
.+++||..+.+++++++|+.+|+.||+ |..|.+.+. ...+.++||+|++|.+..+...|+.
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~-I~~C~LAr~-pt~~~HkGyGfiEy~n~qs~~eAia 270 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE-IVKCQLARA-PTGRGHKGYGFIEYNNLQSQSEAIA 270 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcc-eeeEEeecc-CCCCCccceeeEEeccccchHHHhh
Confidence 368999999999999999999999999 999999999 6778899999999999988888888
Q ss_pred hccCCCcccCCCCCeeeeCCCCCCC-------------------------------------------------------
Q 011693 244 KMTNPNFKLGTNAPTVSWADPRNVD------------------------------------------------------- 268 (479)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------- 268 (479)
.||- |.+++.-++|..+-.+...
T Consensus 271 sMNl--FDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p 348 (544)
T KOG0124|consen 271 SMNL--FDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQP 348 (544)
T ss_pred hcch--hhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCC
Confidence 7762 2222222222111000000
Q ss_pred ----C-----------------------C---------------------------------------------------
Q 011693 269 ----S-----------------------S--------------------------------------------------- 270 (479)
Q Consensus 269 ----~-----------------------~--------------------------------------------------- 270 (479)
. .
T Consensus 349 ~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~ 428 (544)
T KOG0124|consen 349 LGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSIS 428 (544)
T ss_pred CCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCcccc
Confidence 0 0
Q ss_pred -------------CCccccEEEEcCC--CCCCC---HHHHHHHHhhcCCeEEEEecCCCCCCCc----ccEEEEEeCChH
Q 011693 271 -------------GASQVKAVYVKNL--PRNVT---QDQLKKLFEHHGRITKVVVPPAKPGQEK----NRIGFVHFAERS 328 (479)
Q Consensus 271 -------------~~~~~~~l~V~nL--p~~~t---~~~l~~~F~~~G~v~~v~i~~~~~~~~~----~G~afV~F~~~~ 328 (479)
....++.|.++|+ |.+++ +.+|++.|.+||.|.+|.|...+.+..- ----||+|....
T Consensus 429 G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~ 508 (544)
T KOG0124|consen 429 GSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIAS 508 (544)
T ss_pred CccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhh
Confidence 0000578888998 55554 4689999999999999999988866521 113699999999
Q ss_pred HHHHHHHHhCCceecCeEEEEEec
Q 011693 329 SAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 329 ~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
++.+|+.+|+|+.|.||++....-
T Consensus 509 e~~rak~ALdGRfFgGr~VvAE~Y 532 (544)
T KOG0124|consen 509 ETHRAKQALDGRFFGGRKVVAEVY 532 (544)
T ss_pred HHHHHHHhhccceecCceeehhhh
Confidence 999999999999999999877554
No 19
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=8.1e-26 Score=206.64 Aligned_cols=188 Identities=21% Similarity=0.373 Sum_probs=159.3
Q ss_pred HHHHHHHHHHhCCCccCCeEEEEeeccc----------------ccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEee
Q 011693 153 VELASKAIDKLNNTEFKGKKIRCSTSQA----------------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216 (479)
Q Consensus 153 ~~~A~~a~~~~~~~~~~g~~i~v~~~~~----------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~ 216 (479)
.++|.++|..-. |..|.|...+. .+.|||+.||+++.+++|..+|.+.|+ |.+++|+.
T Consensus 44 ~eaal~al~E~t-----gy~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~-I~elRLMm 117 (506)
T KOG0117|consen 44 EEAALKALLERT-----GYTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGK-IYELRLMM 117 (506)
T ss_pred HHHHHHHHHHhc-----CceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccc-eeeEEEee
Confidence 677777775433 33455544432 367999999999999999999999999 99999999
Q ss_pred cCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCeeeeCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHH
Q 011693 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLF 296 (479)
Q Consensus 217 ~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F 296 (479)
+ +.+|.++|||||.|.+.+.|+.|++.|++..|. .++.|.|+.+... ++|||+|||.+.++++|++.|
T Consensus 118 D-~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir-~GK~igvc~Svan----------~RLFiG~IPK~k~keeIlee~ 185 (506)
T KOG0117|consen 118 D-PFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR-PGKLLGVCVSVAN----------CRLFIGNIPKTKKKEEILEEM 185 (506)
T ss_pred c-ccCCCCcceEEEEeecHHHHHHHHHHhhCcccc-CCCEeEEEEeeec----------ceeEeccCCccccHHHHHHHH
Confidence 9 899999999999999999999999999998776 5666777665433 799999999999999999999
Q ss_pred hhcCC-eEEEEecCCC-CCCCcccEEEEEeCChHHHHHHHHHhC--CceecCeEEEEEeccCCCcc
Q 011693 297 EHHGR-ITKVVVPPAK-PGQEKNRIGFVHFAERSSAMKALKNTE--KYELDGQALECSLAKPQADQ 358 (479)
Q Consensus 297 ~~~G~-v~~v~i~~~~-~~~~~~G~afV~F~~~~~A~~A~~~l~--~~~~~g~~l~v~~a~~~~~~ 358 (479)
++.+. |++|.|.... +..++||||||+|.++..|..|-++|- ...+.|+.|.|.||.|....
T Consensus 186 ~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ 251 (506)
T KOG0117|consen 186 KKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEP 251 (506)
T ss_pred HhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCC
Confidence 99976 8888887766 456779999999999999999998875 45678999999999987653
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.95 E-value=3.5e-27 Score=233.86 Aligned_cols=172 Identities=21% Similarity=0.440 Sum_probs=151.9
Q ss_pred ccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCeee
Q 011693 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVS 260 (479)
Q Consensus 181 ~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 260 (479)
.++|||+||+..+++++|+++|..||+ |..+.++.+ +.+++++|||||+|.+.++|.+|+..|++. .+.++.+.|.
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~-I~sV~I~~D-~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~--~i~GR~IkV~ 182 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGP-IKSINMSWD-PATGKHKGFAFVEYEVPEAAQLALEQMNGQ--MLGGRNIKVG 182 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCC-EEEEEEeec-CCCCCcCCeEEEEeCcHHHHHHHHHhcCCe--EEecceeeec
Confidence 367999999999999999999999999 999999998 788999999999999999999999999875 4567777777
Q ss_pred eCCCCCCCC-------CCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHH
Q 011693 261 WADPRNVDS-------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333 (479)
Q Consensus 261 ~~~~~~~~~-------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A 333 (479)
+........ ......++|||+|||.++++++|+++|+.||.|++|+|.+++.++.+||||||+|.+.++|.+|
T Consensus 183 rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kA 262 (612)
T TIGR01645 183 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEA 262 (612)
T ss_pred ccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHH
Confidence 544321111 1122347999999999999999999999999999999999999998999999999999999999
Q ss_pred HHHhCCceecCeEEEEEeccCCC
Q 011693 334 LKNTEKYELDGQALECSLAKPQA 356 (479)
Q Consensus 334 ~~~l~~~~~~g~~l~v~~a~~~~ 356 (479)
|..||++.|+|+.|+|.++.++.
T Consensus 263 I~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 263 IASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred HHHhCCCeeCCeEEEEEecCCCc
Confidence 99999999999999999998654
No 21
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.95 E-value=6.4e-27 Score=225.85 Aligned_cols=249 Identities=22% Similarity=0.332 Sum_probs=205.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 179 (479)
..+.|+|+|||..+..++|..+|..||.|..|.+. + .|. .|+|.|.++.+|.+|+..|....+....+.+.++.
T Consensus 384 s~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~-~G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP 457 (725)
T KOG0110|consen 384 SDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--P-GGT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAP 457 (725)
T ss_pred hcceeeeccCccccccHHHHHHhhcccccceeecC--c-ccc---eeeeeecCccchHHHHHHhchhhhccCccccccCh
Confidence 35789999999999999999999999999999543 2 122 39999999999999999988776665555443321
Q ss_pred c--------------------------------------------------------ccccccCCCCCCCCHHHHHHHHH
Q 011693 180 A--------------------------------------------------------KYRLFIGNIPRNWGSEDLQKVVS 203 (479)
Q Consensus 180 ~--------------------------------------------------------~~~l~v~~l~~~~~~~~l~~~f~ 203 (479)
. ..+|||.||+++++.+.|..+|.
T Consensus 458 ~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~ 537 (725)
T KOG0110|consen 458 EDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFS 537 (725)
T ss_pred hhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHH
Confidence 0 02399999999999999999999
Q ss_pred hhCCCeeEEEEeecCCC--CCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCeeeeCCCCCC-----CCCCCcccc
Q 011693 204 EVGPGVTGVELVKDMKN--SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNV-----DSSGASQVK 276 (479)
Q Consensus 204 ~~g~~i~~~~~~~~~~~--~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 276 (479)
..|. |..+.|..-... .-.++||+||+|.+.++|+.|++.|++. .+.++.+.+.++..... .......++
T Consensus 538 k~G~-VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgt--vldGH~l~lk~S~~k~~~~~gK~~~~kk~~t 614 (725)
T KOG0110|consen 538 KQGT-VLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGT--VLDGHKLELKISENKPASTVGKKKSKKKKGT 614 (725)
T ss_pred hcCe-EEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCc--eecCceEEEEeccCccccccccccccccccc
Confidence 9998 777766654222 4457899999999999999999999975 56777777777762211 113333468
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccCCC
Q 011693 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA 356 (479)
Q Consensus 277 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 356 (479)
+|.|+|||+.++..+|+.+|..||.|.+|+|+.......++|||||+|-++.+|..|+.+|....|.||+|.+.||....
T Consensus 615 KIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 615 KILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred eeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 99999999999999999999999999999999987777779999999999999999999999999999999999997654
Q ss_pred c
Q 011693 357 D 357 (479)
Q Consensus 357 ~ 357 (479)
.
T Consensus 695 ~ 695 (725)
T KOG0110|consen 695 T 695 (725)
T ss_pred H
Confidence 3
No 22
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.95 E-value=1.1e-25 Score=204.79 Aligned_cols=145 Identities=30% Similarity=0.510 Sum_probs=129.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHH-hcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeec
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQ-SIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 178 (479)
..+.+||.|||+++.+++|+++|. +.|+|+.|.|..|. +|+++|+|.|+|+++|.++||++.|+...+.||+|.|+..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 346699999999999999999995 57899999999995 6999999999999999999999999999999999999643
Q ss_pred ccc-----------------------------------------------------------------------------
Q 011693 179 QAK----------------------------------------------------------------------------- 181 (479)
Q Consensus 179 ~~~----------------------------------------------------------------------------- 181 (479)
...
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 210
Q ss_pred --------------cccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccC
Q 011693 182 --------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTN 247 (479)
Q Consensus 182 --------------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~ 247 (479)
.++||.||...+....|++.|.-.|. +..+.+-.+ +.+.+++++.++|..+-.|..|+..+..
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGk-v~~vdf~id--KeG~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGK-VQSVDFSID--KEGNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhcccee-eeeeceeec--cccccCCeeEEEecchHHHHHHHHhhcc
Confidence 35789999999999999999999888 888888887 6678999999999999999999998885
Q ss_pred C
Q 011693 248 P 248 (479)
Q Consensus 248 ~ 248 (479)
.
T Consensus 279 ~ 279 (608)
T KOG4212|consen 279 Q 279 (608)
T ss_pred C
Confidence 3
No 23
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=4.2e-27 Score=213.94 Aligned_cols=172 Identities=24% Similarity=0.450 Sum_probs=152.4
Q ss_pred cccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCc-ccCCCCCeee
Q 011693 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF-KLGTNAPTVS 260 (479)
Q Consensus 182 ~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~-~~~~~~~~~~ 260 (479)
-+|||+.+|+.|++.+|+.+|++||. |.+|.|++| +.++.++|||||.|.++++|.+|+..|++... .....++.|+
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~-V~einl~kD-k~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGN-VYEINLIKD-KSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCc-eeEEEeecc-cccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 47899999999999999999999999 999999999 88999999999999999999999999987643 3455678888
Q ss_pred eCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCc
Q 011693 261 WADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340 (479)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~ 340 (479)
+++.....- ...++|||+-|+..+|+.+|+++|++||.|++|+|+++..+.+ ||||||+|.+.+.|..||+.||+.
T Consensus 113 ~Ad~E~er~---~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~s-RGcaFV~fstke~A~~Aika~ng~ 188 (510)
T KOG0144|consen 113 YADGERERI---VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLS-RGCAFVKFSTKEMAVAAIKALNGT 188 (510)
T ss_pred ccchhhhcc---ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccc-cceeEEEEehHHHHHHHHHhhccc
Confidence 888765432 3347999999999999999999999999999999999987776 999999999999999999999975
Q ss_pred -eecC--eEEEEEeccCCCccC
Q 011693 341 -ELDG--QALECSLAKPQADQK 359 (479)
Q Consensus 341 -~~~g--~~l~v~~a~~~~~~~ 359 (479)
++.| .+|.|+||.++..+.
T Consensus 189 ~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 189 QTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred eeeccCCCceEEEecccCCCch
Confidence 4655 689999998877654
No 24
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.94 E-value=5.2e-27 Score=220.56 Aligned_cols=245 Identities=22% Similarity=0.375 Sum_probs=209.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 179 (479)
+.++||+--|+..++.-+|.+||+.+|+|..|.|+.|+.+++++|.|||+|.+.+.+..|| .|.|..+.|.+|.|....
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSE 256 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccH
Confidence 4678999999999999999999999999999999999999999999999999999999999 799999999999997654
Q ss_pred c--------------------ccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHH
Q 011693 180 A--------------------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAE 239 (479)
Q Consensus 180 ~--------------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 239 (479)
. -..|+|+||..++++.+|+.+|+.||. |..+.+..+ ..+|+++||+||+|.+.++|.
T Consensus 257 aeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~-Ie~v~l~~d-~~tG~skgfGfi~f~~~~~ar 334 (549)
T KOG0147|consen 257 AEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGK-IENVQLTKD-SETGRSKGFGFITFVNKEDAR 334 (549)
T ss_pred HHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCccc-ceeeeeccc-cccccccCcceEEEecHHHHH
Confidence 2 134899999999999999999999999 999999998 669999999999999999999
Q ss_pred HHHHhccCCCcccCCCCCeeeeCCCCCCCC--------------------------------------------------
Q 011693 240 YSRQKMTNPNFKLGTNAPTVSWADPRNVDS-------------------------------------------------- 269 (479)
Q Consensus 240 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 269 (479)
+|+..||+ +.+.++.+.|.....+....
T Consensus 335 ~a~e~lng--felAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~ 412 (549)
T KOG0147|consen 335 KALEQLNG--FELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLL 412 (549)
T ss_pred HHHHHhcc--ceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhc
Confidence 99999998 77777776665322111000
Q ss_pred ------------------CCC-------ccccEEEEcCC--CCCCC--------HHHHHHHHhhcCCeEEEEecCCCCCC
Q 011693 270 ------------------SGA-------SQVKAVYVKNL--PRNVT--------QDQLKKLFEHHGRITKVVVPPAKPGQ 314 (479)
Q Consensus 270 ------------------~~~-------~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~v~~v~i~~~~~~~ 314 (479)
... .++.||.+.|+ |...| .++|.+-|.+||.|.+|.|-++.
T Consensus 413 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns--- 489 (549)
T KOG0147|consen 413 AKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNS--- 489 (549)
T ss_pred cccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCC---
Confidence 001 33567777777 33322 37889999999999999997654
Q ss_pred CcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccC
Q 011693 315 EKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (479)
Q Consensus 315 ~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (479)
-|+.||.|.+.+.|..|+.+||+.+|.|+.|..+|-..
T Consensus 490 --~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 490 --AGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPL 527 (549)
T ss_pred --CceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeeh
Confidence 48999999999999999999999999999999988643
No 25
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=1.5e-26 Score=186.80 Aligned_cols=172 Identities=22% Similarity=0.330 Sum_probs=154.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 180 (479)
..||||+||+..++++-|.++|-+.|+|+++++.+|+.+...+|||||+|.+.++|.-|++-|+...|.||+|+|..+..
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~ 88 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASA 88 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEeccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999986652
Q ss_pred ccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCeee
Q 011693 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVS 260 (479)
Q Consensus 181 ~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 260 (479)
..+
T Consensus 89 ~~~----------------------------------------------------------------------------- 91 (203)
T KOG0131|consen 89 HQK----------------------------------------------------------------------------- 91 (203)
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 100
Q ss_pred eCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEE-EEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCC
Q 011693 261 WADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITK-VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (479)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~ 339 (479)
...-+.+|||+||.+.+++..|.++|+.||.|.. -.|+++..++.++|||||.|.+.+.+.+|+.++|+
T Consensus 92 ----------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ng 161 (203)
T KOG0131|consen 92 ----------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNG 161 (203)
T ss_pred ----------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhcc
Confidence 0001158999999999999999999999999664 68899999999999999999999999999999999
Q ss_pred ceecCeEEEEEeccCCCccC
Q 011693 340 YELDGQALECSLAKPQADQK 359 (479)
Q Consensus 340 ~~~~g~~l~v~~a~~~~~~~ 359 (479)
..++.++|.|+++..+....
T Consensus 162 q~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 162 QYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred chhcCCceEEEEEEecCCCc
Confidence 99999999999998766543
No 26
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.94 E-value=1.4e-25 Score=204.85 Aligned_cols=178 Identities=24% Similarity=0.463 Sum_probs=156.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 179 (479)
+.++|||++|+|++|++.|+++|.+||+|.+|.+++|+.+++++||+||+|.+++.+.++| ....+.|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheee-cccccccCCccccceecc
Confidence 5799999999999999999999999999999999999999999999999999999999999 567888999999887765
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCee
Q 011693 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (479)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (479)
+...--. .
T Consensus 84 ~r~~~~~----------------------------------~-------------------------------------- 91 (311)
T KOG4205|consen 84 SREDQTK----------------------------------V-------------------------------------- 91 (311)
T ss_pred Ccccccc----------------------------------c--------------------------------------
Confidence 4321000 0
Q ss_pred eeCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCC
Q 011693 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (479)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~ 339 (479)
.....+++|||++||.++++++|+++|.+||.|..+.++.|..+..++||+||+|.+.+.+.+++. .+-
T Consensus 92 ----------~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f 160 (311)
T KOG4205|consen 92 ----------GRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKF 160 (311)
T ss_pred ----------ccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cce
Confidence 000123799999999999999999999999999999999999999999999999999999999987 588
Q ss_pred ceecCeEEEEEeccCCCccCCC
Q 011693 340 YELDGQALECSLAKPQADQKSA 361 (479)
Q Consensus 340 ~~~~g~~l~v~~a~~~~~~~~~ 361 (479)
+.|+++.+.|+.|.|+......
T Consensus 161 ~~~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 161 HDFNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred eeecCceeeEeeccchhhcccc
Confidence 8999999999999999876654
No 27
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.94 E-value=3.5e-25 Score=215.34 Aligned_cols=170 Identities=22% Similarity=0.446 Sum_probs=153.5
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCee
Q 011693 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (479)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (479)
++.+|||+|||..+++++|+++|+.||+ |..|+++.+ +.+++++|||||+|.+.++|.+|+..|++. .+.++.+.|
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~-i~~v~i~~d-~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~--~l~g~~i~v 77 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGE-IESCKLVRD-KVTGQSLGYGFVNYVRPEDAEKAVNSLNGL--RLQNKTIKV 77 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCC-EEEEEEEEc-CCCCccceEEEEEECcHHHHHHHHhhcccE--EECCeeEEE
Confidence 4578999999999999999999999999 999999999 778999999999999999999999999974 567888999
Q ss_pred eeCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCC
Q 011693 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (479)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~ 339 (479)
.|+.+.... ....+|||+|||..+++++|+++|++||.|..++|+.+..++.++|||||+|.+.++|..||..||+
T Consensus 78 ~~a~~~~~~----~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g 153 (352)
T TIGR01661 78 SYARPSSDS----IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNG 153 (352)
T ss_pred Eeecccccc----cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 998765432 2347899999999999999999999999999999999988888899999999999999999999999
Q ss_pred ceecC--eEEEEEeccCCCc
Q 011693 340 YELDG--QALECSLAKPQAD 357 (479)
Q Consensus 340 ~~~~g--~~l~v~~a~~~~~ 357 (479)
..+.+ ++|.|.++..+..
T Consensus 154 ~~~~g~~~~i~v~~a~~~~~ 173 (352)
T TIGR01661 154 TTPSGCTEPITVKFANNPSS 173 (352)
T ss_pred CccCCCceeEEEEECCCCCc
Confidence 98877 6789999876653
No 28
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=7.2e-26 Score=193.89 Aligned_cols=152 Identities=26% Similarity=0.552 Sum_probs=141.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecccc
Q 011693 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (479)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~ 181 (479)
-.|||+.|...++.++|++.|.+||+|.+++|++|..|+++|||+||.|.++++|+.||..|+|.-|.+|.|+..++..+
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999988643
Q ss_pred ----------------------cccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHH
Q 011693 182 ----------------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAE 239 (479)
Q Consensus 182 ----------------------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 239 (479)
.+||+++++.-++++.+++.|+.||+ |.+|++.++ +||+||.|.++++|.
T Consensus 143 p~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~-I~EVRvFk~-------qGYaFVrF~tkEaAa 214 (321)
T KOG0148|consen 143 PSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGP-IQEVRVFKD-------QGYAFVRFETKEAAA 214 (321)
T ss_pred ccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCc-ceEEEEecc-------cceEEEEecchhhHH
Confidence 57999999999999999999999999 999999999 999999999999999
Q ss_pred HHHHhccCCCcccCCCCCeeeeCC
Q 011693 240 YSRQKMTNPNFKLGTNAPTVSWAD 263 (479)
Q Consensus 240 ~a~~~~~~~~~~~~~~~~~~~~~~ 263 (479)
.||-.+++.. +.+..+++.|-+
T Consensus 215 hAIv~mNnte--i~G~~VkCsWGK 236 (321)
T KOG0148|consen 215 HAIVQMNNTE--IGGQLVRCSWGK 236 (321)
T ss_pred HHHHHhcCce--eCceEEEEeccc
Confidence 9999999874 456666666644
No 29
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.93 E-value=1.7e-25 Score=193.47 Aligned_cols=155 Identities=25% Similarity=0.473 Sum_probs=141.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecccc
Q 011693 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (479)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~ 181 (479)
.+|||+|||..+++.+|+.+|++||+|++|.|+++ |+||..++...|..||..||+-.|+|..|.|+.++++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 46999999999999999999999999999999976 8999999999999999999999999999999877654
Q ss_pred cccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCeeee
Q 011693 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261 (479)
Q Consensus 182 ~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 261 (479)
.+
T Consensus 75 sk------------------------------------------------------------------------------ 76 (346)
T KOG0109|consen 75 SK------------------------------------------------------------------------------ 76 (346)
T ss_pred CC------------------------------------------------------------------------------
Confidence 22
Q ss_pred CCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCce
Q 011693 262 ADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE 341 (479)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~ 341 (479)
.+++|+|+||.+.++.++|+..|++||.|.++.|++ +|+||.|+-.++|..|++.|++..
T Consensus 77 ------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--------dy~fvh~d~~eda~~air~l~~~~ 136 (346)
T KOG0109|consen 77 ------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--------DYAFVHFDRAEDAVEAIRGLDNTE 136 (346)
T ss_pred ------------CccccccCCCCccccCHHHhhhhcccCCceeeeeec--------ceeEEEEeeccchHHHHhcccccc
Confidence 127999999999999999999999999999999986 599999999999999999999999
Q ss_pred ecCeEEEEEeccCCCccCCCC
Q 011693 342 LDGQALECSLAKPQADQKSAG 362 (479)
Q Consensus 342 ~~g~~l~v~~a~~~~~~~~~~ 362 (479)
|.|++++|.++..+......+
T Consensus 137 ~~gk~m~vq~stsrlrtapgm 157 (346)
T KOG0109|consen 137 FQGKRMHVQLSTSRLRTAPGM 157 (346)
T ss_pred cccceeeeeeeccccccCCCC
Confidence 999999999998877655443
No 30
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.93 E-value=6e-24 Score=197.40 Aligned_cols=245 Identities=19% Similarity=0.300 Sum_probs=186.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
......|.+++|||+||+++|.+||+.++ |.++.+.+ .+|+..|-|||+|.+.+++++|| +++...+..|.|.|-.
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Al-kkdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKAL-KKDRESMGHRYIEVFT 82 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHH-HhhHHHhCCceEEEEc
Confidence 44567899999999999999999999995 77765555 46999999999999999999999 5788899999999966
Q ss_pred ccc-----------------ccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHH
Q 011693 178 SQA-----------------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEY 240 (479)
Q Consensus 178 ~~~-----------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 240 (479)
+.. ...|.+++||+.|++++|.++|+..-.....+.++.+ ..+++.+-|||+|++.+.|+.
T Consensus 83 ~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d--~rgR~tGEAfVqF~sqe~ae~ 160 (510)
T KOG4211|consen 83 AGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD--QRGRPTGEAFVQFESQESAEI 160 (510)
T ss_pred cCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc--CCCCcccceEEEecCHHHHHH
Confidence 532 2458889999999999999999988762333555555 677899999999999999999
Q ss_pred HHHhccCC----Cccc------------------CC-----------CCCeeeeCC------------------------
Q 011693 241 SRQKMTNP----NFKL------------------GT-----------NAPTVSWAD------------------------ 263 (479)
Q Consensus 241 a~~~~~~~----~~~~------------------~~-----------~~~~~~~~~------------------------ 263 (479)
|+...... .+.+ .. +.. ..+..
T Consensus 161 Al~rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~-~d~~~~~~~~~~~~r~g~~~~g~~g~~~~ 239 (510)
T KOG4211|consen 161 ALGRHRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGG-YDYGQGRDPGRNATRYGAGGEGYYGFSRY 239 (510)
T ss_pred HHHHHHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccc-cccccccCCCccccccccccCCccccccC
Confidence 98765411 1100 00 000 00000
Q ss_pred --------------------CCCCCC----------CCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCC
Q 011693 264 --------------------PRNVDS----------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG 313 (479)
Q Consensus 264 --------------------~~~~~~----------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~ 313 (479)
+..... .......+++.++||+..+..+|..+|+..-.+ .|.|-....+
T Consensus 240 ~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dG 318 (510)
T KOG4211|consen 240 PSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDG 318 (510)
T ss_pred ccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCC
Confidence 000000 000112789999999999999999999986444 7777777777
Q ss_pred CCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEec
Q 011693 314 QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 314 ~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
.. .|-|+|+|.|.++|..|+.. ++..+..+.|.+...
T Consensus 319 r~-TGEAdveF~t~edav~Amsk-d~anm~hrYVElFln 355 (510)
T KOG4211|consen 319 RA-TGEADVEFATGEDAVGAMGK-DGANMGHRYVELFLN 355 (510)
T ss_pred cc-CCcceeecccchhhHhhhcc-CCcccCcceeeeccc
Confidence 66 78999999999999999985 788888888887665
No 31
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=2.3e-24 Score=216.86 Aligned_cols=171 Identities=23% Similarity=0.386 Sum_probs=147.7
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCee
Q 011693 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (479)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (479)
..++|||+|||..+++++|.++|+.+|. |..|.++.+ +.+++++|||||+|.+.++|.+|+. +++. .+.++.+.+
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~-v~~v~i~~d-~~~~~skg~afVeF~~~e~A~~Al~-l~g~--~~~g~~i~v 162 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGK-VRDVQCIKD-RNSRRSKGVAYVEFYDVESVIKALA-LTGQ--MLLGRPIIV 162 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEeec-CCCCCcceEEEEEECCHHHHHHHHH-hCCC--EECCeeeEE
Confidence 4568999999999999999999999998 999999998 7889999999999999999999996 5544 345666666
Q ss_pred eeCCCCCCCC--------CCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHH
Q 011693 260 SWADPRNVDS--------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331 (479)
Q Consensus 260 ~~~~~~~~~~--------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~ 331 (479)
.++....... ...+...+|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 163 QSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred eecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 6543321111 11223589999999999999999999999999999999999999888999999999999999
Q ss_pred HHHHHhCCceecCeEEEEEeccCC
Q 011693 332 KALKNTEKYELDGQALECSLAKPQ 355 (479)
Q Consensus 332 ~A~~~l~~~~~~g~~l~v~~a~~~ 355 (479)
+|+..||+..|.|++|+|.|+...
T Consensus 243 ~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 243 EALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred HHHHhcCCcEECCEEEEEEEccCC
Confidence 999999999999999999998743
No 32
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.92 E-value=5.2e-24 Score=211.28 Aligned_cols=191 Identities=20% Similarity=0.323 Sum_probs=153.6
Q ss_pred CHHHHHHHHHHhCCCccCCeEEEEeecc-----------cccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCC
Q 011693 152 NVELASKAIDKLNNTEFKGKKIRCSTSQ-----------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKN 220 (479)
Q Consensus 152 ~~~~A~~a~~~~~~~~~~g~~i~v~~~~-----------~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~ 220 (479)
..++|.+||..+++..+........+.. ...+|||+|||+++++++|.++|+++|. |..++|+++ .
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~-I~~vrl~~D--~ 94 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGP-IYELRLMMD--F 94 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCC-EEEEEEEEC--C
Confidence 3678888888787776654433333321 2368999999999999999999999999 999999999 7
Q ss_pred CCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCeeeeCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcC
Q 011693 221 SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG 300 (479)
Q Consensus 221 ~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G 300 (479)
++++++||||+|.+.++|.+|+..|++..+. .++.+.+.++.. .++|||+|||.++|+++|.++|++++
T Consensus 95 sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~-~Gr~l~V~~S~~----------~~rLFVgNLP~~~TeeeL~eeFskv~ 163 (578)
T TIGR01648 95 SGQNRGYAFVTFCGKEEAKEAVKLLNNYEIR-PGRLLGVCISVD----------NCRLFVGGIPKNKKREEILEEFSKVT 163 (578)
T ss_pred CCCccceEEEEeCCHHHHHHHHHHcCCCeec-CCcccccccccc----------CceeEeecCCcchhhHHHHHHhhccc
Confidence 8999999999999999999999999986553 234455554322 37899999999999999999999986
Q ss_pred C-eEEEEec-CCCCCCCcccEEEEEeCChHHHHHHHHHhCC--ceecCeEEEEEeccCCC
Q 011693 301 R-ITKVVVP-PAKPGQEKNRIGFVHFAERSSAMKALKNTEK--YELDGQALECSLAKPQA 356 (479)
Q Consensus 301 ~-v~~v~i~-~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~--~~~~g~~l~v~~a~~~~ 356 (479)
. |+.+.+. ......+++|||||+|.++++|..|++.|+. ..|.|+.|.|.|+.+..
T Consensus 164 egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~ 223 (578)
T TIGR01648 164 EGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEE 223 (578)
T ss_pred CCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccc
Confidence 4 4444443 3344556789999999999999999998864 46789999999998754
No 33
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.91 E-value=1.8e-23 Score=215.21 Aligned_cols=168 Identities=23% Similarity=0.408 Sum_probs=147.2
Q ss_pred ccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCeeeeC
Q 011693 183 RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWA 262 (479)
Q Consensus 183 ~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~ 262 (479)
+|||+|||.++++++|.++|+.+|+ |..|+++++ ..+++++|||||+|.+.++|.+|+..++... +.++.+.+.|+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~-v~~v~v~~d-~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~--i~gk~i~i~~s 77 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGP-VLSVRVCRD-SVTRRSLGYGYVNFQNPADAERALETMNFKR--LGGKPIRIMWS 77 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEEec-CCCCCcceEEEEEECCHHHHHHHHHHhCCCE--ECCeeEEeecc
Confidence 6899999999999999999999999 999999999 7789999999999999999999999998754 56788888887
Q ss_pred CCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCcee
Q 011693 263 DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL 342 (479)
Q Consensus 263 ~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~ 342 (479)
...... ......+|||+|||.++++++|+++|+.||.|.+|+|+.+..+ .++|||||+|.+.++|.+|+..||+..+
T Consensus 78 ~~~~~~--~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g-~skg~afV~F~~~e~A~~Ai~~lng~~~ 154 (562)
T TIGR01628 78 QRDPSL--RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENG-KSRGYGFVHFEKEESAKAAIQKVNGMLL 154 (562)
T ss_pred cccccc--cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCC-CcccEEEEEECCHHHHHHHHHHhcccEe
Confidence 543221 1223468999999999999999999999999999999988644 4589999999999999999999999999
Q ss_pred cCeEEEEEeccCCCc
Q 011693 343 DGQALECSLAKPQAD 357 (479)
Q Consensus 343 ~g~~l~v~~a~~~~~ 357 (479)
.++.|.|....++..
T Consensus 155 ~~~~i~v~~~~~~~~ 169 (562)
T TIGR01628 155 NDKEVYVGRFIKKHE 169 (562)
T ss_pred cCceEEEeccccccc
Confidence 999999977654433
No 34
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=1.2e-23 Score=179.00 Aligned_cols=171 Identities=24% Similarity=0.472 Sum_probs=156.1
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCee
Q 011693 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (479)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (479)
.+..|.|.-||..+++++++.+|.+.|+ |++|++++| +.+|.+-||+||.|.++.+|++|+..|++ +.+..+.+.|
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGe-iEScKLvRD-KitGqSLGYGFVNYv~p~DAe~AintlNG--LrLQ~KTIKV 115 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYVRPKDAEKAINTLNG--LRLQNKTIKV 115 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccc-eeeeeeeec-cccccccccceeeecChHHHHHHHhhhcc--eeeccceEEE
Confidence 4567888999999999999999999999 999999999 89999999999999999999999999997 4667888999
Q ss_pred eeCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCC
Q 011693 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (479)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~ 339 (479)
+++.|.. .......|||.+||...|..+|.++|++||.|.--+|+.|..++.+||.+||.|+...+|+.||..|||
T Consensus 116 SyARPSs----~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG 191 (360)
T KOG0145|consen 116 SYARPSS----DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNG 191 (360)
T ss_pred EeccCCh----hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccC
Confidence 9988764 344557999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecC--eEEEEEeccCCCcc
Q 011693 340 YELDG--QALECSLAKPQADQ 358 (479)
Q Consensus 340 ~~~~g--~~l~v~~a~~~~~~ 358 (479)
..-.| .+|.|+|+..+...
T Consensus 192 ~~P~g~tepItVKFannPsq~ 212 (360)
T KOG0145|consen 192 QKPSGCTEPITVKFANNPSQK 212 (360)
T ss_pred CCCCCCCCCeEEEecCCcccc
Confidence 88776 57999999876443
No 35
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=1.6e-23 Score=179.02 Aligned_cols=246 Identities=17% Similarity=0.318 Sum_probs=164.1
Q ss_pred hcCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCc-cC--Ce
Q 011693 95 LALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE-FK--GK 171 (479)
Q Consensus 95 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~-~~--g~ 171 (479)
+..+.+.++|||+-|...-.|+|++.+|..||.|.+|.+.+.++ |.+||+|||.|.+..+|..||..||+.. +- ..
T Consensus 13 esrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASS 91 (371)
T KOG0146|consen 13 ESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASS 91 (371)
T ss_pred ccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCcc
Confidence 34455678999999999999999999999999999999999875 9999999999999999999999999875 33 35
Q ss_pred EEEEeecccccc--------------------------------------------------------------------
Q 011693 172 KIRCSTSQAKYR-------------------------------------------------------------------- 183 (479)
Q Consensus 172 ~i~v~~~~~~~~-------------------------------------------------------------------- 183 (479)
.|.|++++..+.
T Consensus 92 SLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~a 171 (371)
T KOG0146|consen 92 SLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNA 171 (371)
T ss_pred ceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhh
Confidence 788888763200
Q ss_pred ----------------------ccc------------CCCCCCCCHHHHHHHHHhhCCCee---EEEEeecCCCCCCCce
Q 011693 184 ----------------------LFI------------GNIPRNWGSEDLQKVVSEVGPGVT---GVELVKDMKNSSNNRG 226 (479)
Q Consensus 184 ----------------------l~v------------~~l~~~~~~~~l~~~f~~~g~~i~---~~~~~~~~~~~~~~~g 226 (479)
--| ..|+.-.+-..-.+....-|-... ...+ .+ .-...-
T Consensus 172 ngl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~v-a~---~lq~a~ 247 (371)
T KOG0146|consen 172 NGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTV-AD---PLQQAY 247 (371)
T ss_pred cccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccc-cc---hhhhhh
Confidence 000 001111000000111110000000 0000 00 000000
Q ss_pred EEEEEeCCHhHHHHHHHhccCCCcccCCCCCeeeeCCCCCCC---CCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeE
Q 011693 227 FAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD---SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRIT 303 (479)
Q Consensus 227 ~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~ 303 (479)
-+.-.|. ..+-.++..+. ..+..+.... ....+..+.|||-.||....+.+|.++|-.||.|+
T Consensus 248 ~g~~~Y~--Aaypaays~v~------------~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhiv 313 (371)
T KOG0146|consen 248 AGVQQYA--AAYPAAYSPIS------------QAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIV 313 (371)
T ss_pred hhHHHHh--hhcchhhhhhh------------hcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhcccccee
Confidence 0000010 00001111110 0000111000 12233458999999999999999999999999999
Q ss_pred EEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccCCCccC
Q 011693 304 KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK 359 (479)
Q Consensus 304 ~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~ 359 (479)
+.+++.|+.++.+|.|+||.|+++.+|+.||..|||+.|+-++|+|.+.+|+...+
T Consensus 314 SaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 314 SAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred eeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 99999999999999999999999999999999999999999999999999887543
No 36
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.89 E-value=4.4e-22 Score=203.20 Aligned_cols=168 Identities=17% Similarity=0.279 Sum_probs=133.8
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHhhC-----------CCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccC
Q 011693 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVG-----------PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTN 247 (479)
Q Consensus 179 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g-----------~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~ 247 (479)
...++|||+|||..+++++|.++|..+. ..|..+.+ .+.++||||+|.+.++|..|+. |++
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-------~~~kg~afVeF~~~e~A~~Al~-l~g 244 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-------NKEKNFAFLEFRTVEEATFAMA-LDS 244 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-------CCCCCEEEEEeCCHHHHhhhhc-CCC
Confidence 3457899999999999999999999862 22333333 3458999999999999999994 765
Q ss_pred CCcccCCCCCeeeeCCCCCC-------------------------CCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCe
Q 011693 248 PNFKLGTNAPTVSWADPRNV-------------------------DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRI 302 (479)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v 302 (479)
. .+.+..|.+.+...... ........++|||+|||+.+|+++|+++|+.||.|
T Consensus 245 ~--~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i 322 (509)
T TIGR01642 245 I--IYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDL 322 (509)
T ss_pred e--EeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 4 33445555543211100 00012234799999999999999999999999999
Q ss_pred EEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccCCC
Q 011693 303 TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA 356 (479)
Q Consensus 303 ~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 356 (479)
..+.|+.+..++.++|||||+|.+.++|..||..||+..|.|+.|.|.++....
T Consensus 323 ~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~ 376 (509)
T TIGR01642 323 KAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGA 376 (509)
T ss_pred eEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCC
Confidence 999999999889889999999999999999999999999999999999996543
No 37
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.88 E-value=3.7e-22 Score=193.19 Aligned_cols=223 Identities=27% Similarity=0.390 Sum_probs=177.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
..+..+|||+|||+.+|+++|+.+| |||.|..++.|.+|...+++..+.||.|.|..
T Consensus 224 i~etgrlf~RNLpyt~~eed~~~lf-----------------------a~v~~~~~~~avka~~~~D~k~fqgrmlhvlp 280 (725)
T KOG0110|consen 224 ISETGRLFVRNLPYTSTEEDLLKLF-----------------------AFVTFMFPEHAVKAYSELDGKVFQGRMLHVLP 280 (725)
T ss_pred HHhhhhhhhccCCccccHHHHHHhh-----------------------HHHhhhhhHHHHhhhhhccccccccceeeecC
Confidence 3457899999999999999999998 89999999999999999999999999999754
Q ss_pred cccc----------------------------------------------------------------------------
Q 011693 178 SQAK---------------------------------------------------------------------------- 181 (479)
Q Consensus 178 ~~~~---------------------------------------------------------------------------- 181 (479)
...+
T Consensus 281 ~~~k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~ 360 (725)
T KOG0110|consen 281 SKEKSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRV 360 (725)
T ss_pred cchhhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhh
Confidence 3310
Q ss_pred -------------------------cccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHh
Q 011693 182 -------------------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHK 236 (479)
Q Consensus 182 -------------------------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~ 236 (479)
..++|+|||..+..+.|..+|..||+ |..+.+.. .-.-++|+|.+..
T Consensus 361 ~~e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~-i~rvllp~-------~G~~aiv~fl~p~ 432 (725)
T KOG0110|consen 361 VQEVRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGE-IGRVLLPP-------GGTGAIVEFLNPL 432 (725)
T ss_pred chhhhhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccc-cceeecCc-------ccceeeeeecCcc
Confidence 34789999999999999999999999 88874431 1234899999999
Q ss_pred HHHHHHHhccCCCcccCCCCCeeeeCCCCCCC---------------------------C-------------------C
Q 011693 237 CAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD---------------------------S-------------------S 270 (479)
Q Consensus 237 ~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~-------------------~ 270 (479)
+|..|...|.-..+. ..++.+.|+...... . .
T Consensus 433 eAr~Afrklaysr~k--~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~ 510 (725)
T KOG0110|consen 433 EARKAFRKLAYSRFK--SAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAE 510 (725)
T ss_pred chHHHHHHhchhhhc--cCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhh
Confidence 999999998755332 222222222110000 0 0
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCC---CcccEEEEEeCChHHHHHHHHHhCCceecCeEE
Q 011693 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQ---EKNRIGFVHFAERSSAMKALKNTEKYELDGQAL 347 (479)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~---~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l 347 (479)
.....++|||.||++++|.++|..+|...|.|.++.|...++.. .+.|||||+|.+.++|+.|++.|+++.|+|+.|
T Consensus 511 ~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l 590 (725)
T KOG0110|consen 511 DEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKL 590 (725)
T ss_pred ccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceE
Confidence 00012349999999999999999999999999999998877543 346999999999999999999999999999999
Q ss_pred EEEecc
Q 011693 348 ECSLAK 353 (479)
Q Consensus 348 ~v~~a~ 353 (479)
.|+++.
T Consensus 591 ~lk~S~ 596 (725)
T KOG0110|consen 591 ELKISE 596 (725)
T ss_pred EEEecc
Confidence 999998
No 38
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.86 E-value=1.7e-20 Score=169.87 Aligned_cols=242 Identities=24% Similarity=0.325 Sum_probs=189.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCC--ccCCeEEEEee
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNT--EFKGKKIRCST 177 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~--~~~g~~i~v~~ 177 (479)
.++.|.||||||+++|++|..++.+||.|+.+.+.+.+ ..|||+|.+.++|...+...... .+.++.|-|.+
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGk------nQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~ 100 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGK------NQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQY 100 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeeccc------hhhhhhhcchhhhhheeecccccCccccCcceeehh
Confidence 67899999999999999999999999999999988753 27999999999998854332222 25566666655
Q ss_pred cccc----------------------------------------------cccccCCCCCCCCHHHHHHHHHhhCCCeeE
Q 011693 178 SQAK----------------------------------------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTG 211 (479)
Q Consensus 178 ~~~~----------------------------------------------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~ 211 (479)
+... -+++|.++-..++-+.|..+|++||. |..
T Consensus 101 sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~-VlK 179 (492)
T KOG1190|consen 101 SNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGF-VLK 179 (492)
T ss_pred hhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcce-eEE
Confidence 4210 13567888889999999999999999 554
Q ss_pred EEEeecCCCCCCCceE-EEEEeCCHhHHHHHHHhccCCCcccCCCCCeeeeCCC----------CCCC------------
Q 011693 212 VELVKDMKNSSNNRGF-AFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP----------RNVD------------ 268 (479)
Q Consensus 212 ~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~----------~~~~------------ 268 (479)
|....- +.+| |.|+|.+...|..|...|.+..+.-+.+.+++.++.- +...
T Consensus 180 IiTF~K------nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~ 253 (492)
T KOG1190|consen 180 IITFTK------NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQ 253 (492)
T ss_pred EEEEec------ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccc
Confidence 443322 2444 8999999999999999999999887777666654321 1000
Q ss_pred -------------------------C----------CCCc--cccEEEEcCCC-CCCCHHHHHHHHhhcCCeEEEEecCC
Q 011693 269 -------------------------S----------SGAS--QVKAVYVKNLP-RNVTQDQLKKLFEHHGRITKVVVPPA 310 (479)
Q Consensus 269 -------------------------~----------~~~~--~~~~l~V~nLp-~~~t~~~l~~~F~~~G~v~~v~i~~~ 310 (479)
. .... .+..|.|.||. ..+|.+.|..+|.-||.|.+|+|+.+
T Consensus 254 p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~n 333 (492)
T KOG1190|consen 254 PSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYN 333 (492)
T ss_pred cccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeec
Confidence 0 0000 13678889985 66899999999999999999999998
Q ss_pred CCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccCCCccC
Q 011693 311 KPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK 359 (479)
Q Consensus 311 ~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~ 359 (479)
+ +--|+|++.+...|.-|+..|+|..|.|++|+|.+++.....-
T Consensus 334 k-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vql 377 (492)
T KOG1190|consen 334 K-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQL 377 (492)
T ss_pred C-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccC
Confidence 7 5579999999999999999999999999999999998665443
No 39
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.84 E-value=1.9e-19 Score=152.15 Aligned_cols=207 Identities=19% Similarity=0.341 Sum_probs=151.2
Q ss_pred CceEEEcCCCCCCCHHHHHH----HHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEe
Q 011693 101 GSEVYIGGIPHDASEHDLRD----FCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~----~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~ 176 (479)
..||||.||+..+..++|+. +|++||.|..|...+. .+.+|-|||.|.+.+.|..|+..|+|..+.|+.++|.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT---PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC---CCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 34999999999999999888 9999999999998864 6799999999999999999999999999999999999
Q ss_pred ecccccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCC
Q 011693 177 TSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNA 256 (479)
Q Consensus 177 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~ 256 (479)
+|.++..++...-+..+.. ...+....+... ... ...++........
T Consensus 86 yA~s~sdii~~~~~~~v~~----------~~k~~~~~~~~~-~~~---------------------~~~ng~~~~~~~~- 132 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTFVEK----------EKKINGEILARI-KQP---------------------LDTNGHFYNMNRM- 132 (221)
T ss_pred cccCccchhhccCceeccc----------cCcccccccccc-CCc---------------------ccccccccccccc-
Confidence 9998876554321100000 000000000000 000 0000000000000
Q ss_pred CeeeeCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHH
Q 011693 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (479)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~ 336 (479)
..+.........+..+||+.|||..++.+.|..+|.+|.....|+++... ++.|||+|.+...|..|...
T Consensus 133 -----~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~ 202 (221)
T KOG4206|consen 133 -----NLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQA 202 (221)
T ss_pred -----cCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhh
Confidence 00000013345566899999999999999999999999999999999877 78999999999999999999
Q ss_pred hCCceec-CeEEEEEecc
Q 011693 337 TEKYELD-GQALECSLAK 353 (479)
Q Consensus 337 l~~~~~~-g~~l~v~~a~ 353 (479)
|.+..|. ...+.|.+++
T Consensus 203 lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 203 LQGFKITKKNTMQITFAK 220 (221)
T ss_pred hccceeccCceEEecccC
Confidence 9998887 7888888764
No 40
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=1.6e-20 Score=167.43 Aligned_cols=170 Identities=21% Similarity=0.447 Sum_probs=150.1
Q ss_pred cccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCeeee
Q 011693 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261 (479)
Q Consensus 182 ~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 261 (479)
+++||+.+.+.+.++.|+..|..||+ |.++.+.+| ..++++++|+||+|+-++.|..|++.||+. .++++.+.|..
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGP-IKSInMSWD-p~T~kHKgFAFVEYEvPEaAqLAlEqMNg~--mlGGRNiKVgr 189 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGP-IKSINMSWD-PATGKHKGFAFVEYEVPEAAQLALEQMNGQ--MLGGRNIKVGR 189 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCC-cceeecccc-cccccccceEEEEEeCcHHHHHHHHHhccc--cccCccccccC
Confidence 57899999999999999999999999 999999999 899999999999999999999999999975 67788887774
Q ss_pred CCCCCCCC-------CCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHH
Q 011693 262 ADPRNVDS-------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334 (479)
Q Consensus 262 ~~~~~~~~-------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~ 334 (479)
...-...+ .....-++|||..+.++.++++|+..|+.||.|..|.+-++..++.+|||+||+|.+..+...||
T Consensus 190 PsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 190 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred CCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHh
Confidence 32211111 11223489999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCceecCeEEEEEeccCC
Q 011693 335 KNTEKYELDGQALECSLAKPQ 355 (479)
Q Consensus 335 ~~l~~~~~~g~~l~v~~a~~~ 355 (479)
..||-+.++|..|+|-.+-.+
T Consensus 270 asMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 270 ASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred hhcchhhcccceEecccccCC
Confidence 999999999999999776443
No 41
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.82 E-value=4.7e-19 Score=146.42 Aligned_cols=83 Identities=19% Similarity=0.391 Sum_probs=79.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEecc
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (479)
.+++|||+|||+++|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|++||+.||+..|.|++|+|+++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC
Q 011693 354 PQA 356 (479)
Q Consensus 354 ~~~ 356 (479)
++.
T Consensus 113 ~~~ 115 (144)
T PLN03134 113 DRP 115 (144)
T ss_pred cCC
Confidence 654
No 42
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=6.3e-19 Score=142.77 Aligned_cols=174 Identities=19% Similarity=0.315 Sum_probs=132.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeec
Q 011693 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 178 (479)
..+++|||+|||.++.+.+|.++|-+||.|..|.|...+ ....||||+|.++.+|+.||.--++..+.|..|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 357899999999999999999999999999999987643 45789999999999999999999999999999999987
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCe
Q 011693 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT 258 (479)
Q Consensus 179 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 258 (479)
.....-.-+. | .-.+..++
T Consensus 81 rggr~s~~~~-----------------G------------~y~gggrg-------------------------------- 99 (241)
T KOG0105|consen 81 RGGRSSSDRR-----------------G------------SYSGGGRG-------------------------------- 99 (241)
T ss_pred cCCCcccccc-----------------c------------ccCCCCCC--------------------------------
Confidence 6432100000 0 00000000
Q ss_pred eeeCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhC
Q 011693 259 VSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (479)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~ 338 (479)
.+..-...-........+|.|.+||.+.+|++|+++..+.|.|+...+.+| |++.|+|...++.+-|+..|+
T Consensus 100 -Ggg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld 171 (241)
T KOG0105|consen 100 -GGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLD 171 (241)
T ss_pred -CCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhc
Confidence 000000000011112378999999999999999999999999999999987 699999999999999999998
Q ss_pred CceecC
Q 011693 339 KYELDG 344 (479)
Q Consensus 339 ~~~~~g 344 (479)
...+..
T Consensus 172 ~~~~~s 177 (241)
T KOG0105|consen 172 DQKFRS 177 (241)
T ss_pred cccccC
Confidence 776653
No 43
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.76 E-value=6.4e-17 Score=144.16 Aligned_cols=204 Identities=23% Similarity=0.367 Sum_probs=145.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCee--------EEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccC
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVT--------EVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK 169 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~ 169 (479)
+...+.|||.|||.++|.+++.++|++||.|. .|+|.++.. |..+|-|.+.|--.+++..|+..|++..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc
Confidence 44567799999999999999999999999875 488999865 999999999999999999999999999999
Q ss_pred CeEEEEeecccccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCC
Q 011693 170 GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPN 249 (479)
Q Consensus 170 g~~i~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~ 249 (479)
|+.|+|..|+= ..-|. ...+++.++ ...-.+-+..+....
T Consensus 210 g~~~rVerAkf----------------------q~Kge----------~~~~~k~k~--------k~~~~kk~~k~q~k~ 249 (382)
T KOG1548|consen 210 GKKLRVERAKF----------------------QMKGE----------YDASKKEKG--------KCKDKKKLKKQQQKL 249 (382)
T ss_pred CcEEEEehhhh----------------------hhccC----------cCccccccc--------ccccHHHHHHHHHhh
Confidence 99999987751 11111 000000000 000001111111111
Q ss_pred cccCCCCCeeeeCCCCCCCCCCCccccEEEEcCCCC----CCC-------HHHHHHHHhhcCCeEEEEecCCCCCCCccc
Q 011693 250 FKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPR----NVT-------QDQLKKLFEHHGRITKVVVPPAKPGQEKNR 318 (479)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~----~~t-------~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G 318 (479)
..|-... ...+.....++|.|+||=. ..+ .++|++-+.+||.|.+|.|.-.. +.|
T Consensus 250 ---------~dw~pd~-~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~h----PdG 315 (382)
T KOG1548|consen 250 ---------LDWRPDR-DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRH----PDG 315 (382)
T ss_pred ---------cccCCCc-cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccC----CCc
Confidence 1111111 1122333347899999832 223 46778889999999999987432 368
Q ss_pred EEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccCCC
Q 011693 319 IGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA 356 (479)
Q Consensus 319 ~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 356 (479)
.+.|.|.+.++|..||+.|+|+.|.||.|..++..-..
T Consensus 316 vvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 316 VVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred eeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 99999999999999999999999999999998875443
No 44
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.76 E-value=5.7e-18 Score=140.01 Aligned_cols=82 Identities=24% Similarity=0.627 Sum_probs=78.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 179 (479)
.+++|||+|||+++|+++|+++|++||.|.+|.|++++.|++++|||||+|.+.++|++||+.|++..|.|+.|+|.++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q 011693 180 AK 181 (479)
Q Consensus 180 ~~ 181 (479)
.+
T Consensus 113 ~~ 114 (144)
T PLN03134 113 DR 114 (144)
T ss_pred cC
Confidence 54
No 45
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.75 E-value=1.9e-18 Score=163.26 Aligned_cols=172 Identities=24% Similarity=0.435 Sum_probs=141.4
Q ss_pred cccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCeeee
Q 011693 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261 (479)
Q Consensus 182 ~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 261 (479)
+++|+..|+...++.+|.++|+.+|. |..+.++.+ +.+.+++|.+||+|.+......|+ .|.+.. +-+.++.|..
T Consensus 180 Rtvf~~qla~r~~pRdL~efFs~~gk-VrdVriI~D-r~s~rskgi~Yvef~D~~sVp~ai-aLsGqr--llg~pv~vq~ 254 (549)
T KOG0147|consen 180 RTVFCMQLARRNPPRDLEEFFSIVGK-VRDVRIIGD-RNSRRSKGIAYVEFCDEQSVPLAI-ALSGQR--LLGVPVIVQL 254 (549)
T ss_pred HHHHHHHHhhcCCchhHHHHHHhhcC-cceeEeecc-ccchhhcceeEEEEecccchhhHh-hhcCCc--ccCceeEecc
Confidence 57888888999999999999999999 999999999 899999999999999999888888 444432 2333344433
Q ss_pred CCCCCCC----------CCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHH
Q 011693 262 ADPRNVD----------SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331 (479)
Q Consensus 262 ~~~~~~~----------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~ 331 (479)
....... .....+...|||+||.++.|+++|+.+|++||.|..|.+++|..++.++||+||+|.+.++|+
T Consensus 255 sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar 334 (549)
T KOG0147|consen 255 SEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDAR 334 (549)
T ss_pred cHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHH
Confidence 2211000 011223345999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCceecCeEEEEEeccCCCcc
Q 011693 332 KALKNTEKYELDGQALECSLAKPQADQ 358 (479)
Q Consensus 332 ~A~~~l~~~~~~g~~l~v~~a~~~~~~ 358 (479)
+|+..||++.|.|+.|+|.....+...
T Consensus 335 ~a~e~lngfelAGr~ikV~~v~~r~~~ 361 (549)
T KOG0147|consen 335 KALEQLNGFELAGRLIKVSVVTERVDT 361 (549)
T ss_pred HHHHHhccceecCceEEEEEeeeeccc
Confidence 999999999999999999887655443
No 46
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=4.3e-17 Score=156.49 Aligned_cols=244 Identities=20% Similarity=0.417 Sum_probs=190.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhc-----------C-CeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCcc
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSI-----------G-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF 168 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~-----------G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~ 168 (479)
...++|.++|+.++++.+..+|..- | .|+.|.|.. .+.||||+|.+.+.|..|+ .+++..+
T Consensus 175 ~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~------~~nfa~ie~~s~~~at~~~-~~~~~~f 247 (500)
T KOG0120|consen 175 ARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL------EKNFAFIEFRSISEATEAM-ALDGIIF 247 (500)
T ss_pred hhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc------cccceeEEecCCCchhhhh-cccchhh
Confidence 5679999999999999999999764 3 367776654 4679999999999999999 6888888
Q ss_pred CCeEEEEeecc-----------------------------cccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCC
Q 011693 169 KGKKIRCSTSQ-----------------------------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219 (479)
Q Consensus 169 ~g~~i~v~~~~-----------------------------~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~ 219 (479)
.|+.+++.... ...+++|++||..+++..+.++...||+ +....++.+ .
T Consensus 248 ~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~-lk~f~lv~d-~ 325 (500)
T KOG0120|consen 248 EGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGP-LKAFRLVKD-S 325 (500)
T ss_pred CCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhccc-chhheeecc-c
Confidence 88877774322 1257899999999999999999999999 999999999 7
Q ss_pred CCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCeeeeCCCC--------------------CCCCCCCccccEEE
Q 011693 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR--------------------NVDSSGASQVKAVY 279 (479)
Q Consensus 220 ~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~l~ 279 (479)
.++.+++|||.+|.+......|+..|++..+ +...+.+..+... ...+....++.+|+
T Consensus 326 ~~g~skg~af~ey~dpsvtd~A~agLnGm~l--gd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~ 403 (500)
T KOG0120|consen 326 ATGNSKGFAFCEYCDPSVTDQAIAGLNGMQL--GDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLC 403 (500)
T ss_pred ccccccceeeeeeeCCcchhhhhcccchhhh--cCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhh
Confidence 7799999999999999999999999997643 3333333332211 11123334456677
Q ss_pred EcCCCC--CCC--------HHHHHHHHhhcCCeEEEEecCC-C--CCCCcccEEEEEeCChHHHHHHHHHhCCceecCeE
Q 011693 280 VKNLPR--NVT--------QDQLKKLFEHHGRITKVVVPPA-K--PGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQA 346 (479)
Q Consensus 280 V~nLp~--~~t--------~~~l~~~F~~~G~v~~v~i~~~-~--~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~ 346 (479)
+.|+-. ... -++|+.-|.+||.|..|.|++. . .-...-|..||+|.+.+++++|+.+|+|..|.+|.
T Consensus 404 L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRt 483 (500)
T KOG0120|consen 404 LTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRT 483 (500)
T ss_pred hhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcE
Confidence 666621 111 2566778899999999999988 2 22233477899999999999999999999999999
Q ss_pred EEEEeccCC
Q 011693 347 LECSLAKPQ 355 (479)
Q Consensus 347 l~v~~a~~~ 355 (479)
|..+|-.+.
T Consensus 484 VvtsYydeD 492 (500)
T KOG0120|consen 484 VVASYYDED 492 (500)
T ss_pred EEEEecCHH
Confidence 999987543
No 47
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.73 E-value=6e-16 Score=144.52 Aligned_cols=168 Identities=17% Similarity=0.310 Sum_probs=130.5
Q ss_pred ccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCeee--
Q 011693 183 RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVS-- 260 (479)
Q Consensus 183 ~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~-- 260 (479)
.|.+++||+++|+++|.++|+.++ |.++.+. +.++++.|-|||+|.+.+++++|+++-.. .++.+-|.|-
T Consensus 12 ~vr~rGLPwsat~~ei~~Ff~~~~--I~~~~~~---r~~Gr~sGeA~Ve~~seedv~~AlkkdR~---~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 12 EVRLRGLPWSATEKEILDFFSNCG--IENLEIP---RRNGRPSGEAYVEFTSEEDVEKALKKDRE---SMGHRYIEVFTA 83 (510)
T ss_pred EEEecCCCccccHHHHHHHHhcCc--eeEEEEe---ccCCCcCcceEEEeechHHHHHHHHhhHH---HhCCceEEEEcc
Confidence 456789999999999999999987 7775444 56899999999999999999999886432 3334444443
Q ss_pred ------eCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEE-EEecCCCCCCCcccEEEEEeCChHHHHHH
Q 011693 261 ------WADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITK-VVVPPAKPGQEKNRIGFVHFAERSSAMKA 333 (479)
Q Consensus 261 ------~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-v~i~~~~~~~~~~G~afV~F~~~~~A~~A 333 (479)
|...+....+. ....+|.+++||+.||+++|.+||+..-.|.. |.++.++.++ +.|-|||+|++.+.|++|
T Consensus 84 ~~~e~d~~~~~~g~~s~-~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR-~tGEAfVqF~sqe~ae~A 161 (510)
T KOG4211|consen 84 GGAEADWVMRPGGPNSS-ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGR-PTGEAFVQFESQESAEIA 161 (510)
T ss_pred CCccccccccCCCCCCC-CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCC-cccceEEEecCHHHHHHH
Confidence 33333222222 34579999999999999999999999877776 5566666665 589999999999999999
Q ss_pred HHHhCCceecCeEEEEEeccCCCccCCC
Q 011693 334 LKNTEKYELDGQALECSLAKPQADQKSA 361 (479)
Q Consensus 334 ~~~l~~~~~~g~~l~v~~a~~~~~~~~~ 361 (479)
|.. |...|+.|.|.|..+.....++..
T Consensus 162 l~r-hre~iGhRYIEvF~Ss~~e~~~~~ 188 (510)
T KOG4211|consen 162 LGR-HRENIGHRYIEVFRSSRAEVKRAA 188 (510)
T ss_pred HHH-HHHhhccceEEeehhHHHHHHhhc
Confidence 996 778899999999988766554443
No 48
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.73 E-value=3.3e-16 Score=140.64 Aligned_cols=243 Identities=19% Similarity=0.259 Sum_probs=198.2
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHh--CCCccCCeEE
Q 011693 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL--NNTEFKGKKI 173 (479)
Q Consensus 96 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~--~~~~~~g~~i 173 (479)
..+..+-.|.|++|-..+++.+|.+.++.||.|..|.++.. +..|.|+|.+.+.|+.|+... +...+.|..-
T Consensus 26 hk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~A 99 (494)
T KOG1456|consen 26 HKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQA 99 (494)
T ss_pred CCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc------cceeeeeeccccchhhheehhccCcccccCchh
Confidence 34566789999999999999999999999999999998775 446999999999999998532 3444566665
Q ss_pred EEeecccc-------------cc--cccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHH
Q 011693 174 RCSTSQAK-------------YR--LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCA 238 (479)
Q Consensus 174 ~v~~~~~~-------------~~--l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a 238 (479)
-+.++.+. +. +.|-|--..+|.+.|..++...|. |..|.+++. +--.|.|+|.+.+.|
T Consensus 100 l~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~Gk-VlRIvIfkk------ngVQAmVEFdsv~~A 172 (494)
T KOG1456|consen 100 LFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGK-VLRIVIFKK------NGVQAMVEFDSVEVA 172 (494)
T ss_pred hcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCc-eEEEEEEec------cceeeEEeechhHHH
Confidence 55555322 22 235566678999999999999999 888887764 455799999999999
Q ss_pred HHHHHhccCCCcccCCCCCeeeeCCCCCCCC-------------------------------------------------
Q 011693 239 EYSRQKMTNPNFKLGTNAPTVSWADPRNVDS------------------------------------------------- 269 (479)
Q Consensus 239 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 269 (479)
++|.+.|++..+..+.+.+.+.++.|....-
T Consensus 173 qrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y 252 (494)
T KOG1456|consen 173 QRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGY 252 (494)
T ss_pred HHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCC
Confidence 9999999999999999999888887641100
Q ss_pred -----------------------------CCCccccEEEEcCCCCC-CCHHHHHHHHhhcCCeEEEEecCCCCCCCcccE
Q 011693 270 -----------------------------SGASQVKAVYVKNLPRN-VTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRI 319 (479)
Q Consensus 270 -----------------------------~~~~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~ 319 (479)
....+...+.|.+|... .+-+.|..+|..||.|.+|++++.+ .|.
T Consensus 253 ~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gt 327 (494)
T KOG1456|consen 253 YSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGT 327 (494)
T ss_pred cccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cce
Confidence 00011478999999765 5778999999999999999999987 789
Q ss_pred EEEEeCChHHHHHHHHHhCCceecCeEEEEEeccCCC
Q 011693 320 GFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA 356 (479)
Q Consensus 320 afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 356 (479)
|+|+..+..+.++|+..||+..+.|.+|.|.+++...
T Consensus 328 amVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~ 364 (494)
T KOG1456|consen 328 AMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNF 364 (494)
T ss_pred eEEEcCcHHHHHHHHHHhccCccccceEEEeeccccc
Confidence 9999999999999999999999999999999886544
No 49
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.73 E-value=7.6e-16 Score=138.77 Aligned_cols=253 Identities=16% Similarity=0.217 Sum_probs=186.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 179 (479)
+...|..++|||..+..+|..||+-.-...-.+.+.....|+..|.+.|.|.+.+.-.-|+ +-+.+.+.+|.|.|-.+.
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlal-kRhkhh~g~ryievYka~ 137 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLAL-KRHKHHMGTRYIEVYKAT 137 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhh-HhhhhhccCCceeeeccC
Confidence 4567899999999999999999987654443333443345888999999999999999999 568888999999997654
Q ss_pred cc----------------------cccccCCCCCCCCHHHHHHHHHhhCC---CeeEEEEeecCCCCCCCceEEEEEeCC
Q 011693 180 AK----------------------YRLFIGNIPRNWGSEDLQKVVSEVGP---GVTGVELVKDMKNSSNNRGFAFIEYHN 234 (479)
Q Consensus 180 ~~----------------------~~l~v~~l~~~~~~~~l~~~f~~~g~---~i~~~~~~~~~~~~~~~~g~~fv~f~~ 234 (479)
.. ..|.+++||.+++..++.++|....+ ....+-++. +..++..|-|||.|..
T Consensus 138 ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~--rpdgrpTGdAFvlfa~ 215 (508)
T KOG1365|consen 138 GEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVT--RPDGRPTGDAFVLFAC 215 (508)
T ss_pred chhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEE--CCCCCcccceEEEecC
Confidence 22 24667899999999999999964332 234444444 5899999999999999
Q ss_pred HhHHHHHHHhccCC----Ccc---------------------cCCCCCeeeeCCCCCCCCCCCccccEEEEcCCCCCCCH
Q 011693 235 HKCAEYSRQKMTNP----NFK---------------------LGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQ 289 (479)
Q Consensus 235 ~~~a~~a~~~~~~~----~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~ 289 (479)
.++|..|+.+.... .+. +.....-.-...+... ........||.+++||+.++.
T Consensus 216 ee~aq~aL~khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~-~p~~~~kdcvRLRGLPy~Atv 294 (508)
T KOG1365|consen 216 EEDAQFALRKHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARL-VPPTRSKDCVRLRGLPYEATV 294 (508)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCcccc-CCCCCCCCeeEecCCChhhhH
Confidence 99999987765421 000 0000000000000000 011222589999999999999
Q ss_pred HHHHHHHhhcCC-eEE--EEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccCCCc
Q 011693 290 DQLKKLFEHHGR-ITK--VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQAD 357 (479)
Q Consensus 290 ~~l~~~F~~~G~-v~~--v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 357 (479)
++|.+||..|-. |.. |.++.+.+++. .|-|||+|.+.++|..|....|++....|.|.|.-+.....
T Consensus 295 EdIL~FlgdFa~~i~f~gVHmv~N~qGrP-SGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eel 364 (508)
T KOG1365|consen 295 EDILDFLGDFATDIRFQGVHMVLNGQGRP-SGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEEL 364 (508)
T ss_pred HHHHHHHHHHhhhcccceeEEEEcCCCCc-ChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHH
Confidence 999999999865 444 78888877776 69999999999999999999998888899999988765443
No 50
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.68 E-value=4.8e-15 Score=134.88 Aligned_cols=235 Identities=17% Similarity=0.212 Sum_probs=182.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccC--CeEEEEeecc
Q 011693 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK--GKKIRCSTSQ 179 (479)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~--g~~i~v~~~~ 179 (479)
-+++|.|+-+-+|-+-|..+|++||.|..|.-... ...-.|.|+|.+.+.|..|...|+|..|. .+.|+|.++.
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~K----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk 226 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTK----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK 226 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEEEEEEec----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence 35789999999999999999999999987765432 12234999999999999999999999874 3567776553
Q ss_pred c---------------------------------------------------------------------ccccccCCCC
Q 011693 180 A---------------------------------------------------------------------KYRLFIGNIP 190 (479)
Q Consensus 180 ~---------------------------------------------------------------------~~~l~v~~l~ 190 (479)
- +..|.|.||-
T Consensus 227 lt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln 306 (492)
T KOG1190|consen 227 LTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLN 306 (492)
T ss_pred cccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCc
Confidence 0 0224455554
Q ss_pred -CCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCeeeeCCCCCCCC
Q 011693 191 -RNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269 (479)
Q Consensus 191 -~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (479)
..+|.+.|..+|.-||. |..+.++.. .+..|.|++.+...|..|+..|.+..+. ++.+++.++.-.....
T Consensus 307 ~~~VT~d~LftlFgvYGd-VqRVkil~n------kkd~ALIQmsd~~qAqLA~~hL~g~~l~--gk~lrvt~SKH~~vql 377 (492)
T KOG1190|consen 307 EEAVTPDVLFTLFGVYGD-VQRVKILYN------KKDNALIQMSDGQQAQLAMEHLEGHKLY--GKKLRVTLSKHTNVQL 377 (492)
T ss_pred hhccchhHHHHHHhhhcc-eEEEEeeec------CCcceeeeecchhHHHHHHHHhhcceec--CceEEEeeccCccccC
Confidence 34889999999999999 999999987 2367999999999999999999987554 3555555543221100
Q ss_pred -------------------------------CCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEE-EecCCCCCCCcc
Q 011693 270 -------------------------------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKN 317 (479)
Q Consensus 270 -------------------------------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v-~i~~~~~~~~~~ 317 (479)
.-.+++.+|++.|+|.++++++|+.+|..-|..... ++.... +
T Consensus 378 p~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd-----~ 452 (492)
T KOG1190|consen 378 PREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKD-----R 452 (492)
T ss_pred CCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCC-----c
Confidence 123457899999999999999999999998876544 433322 4
Q ss_pred cEEEEEeCChHHHHHHHHHhCCceecC-eEEEEEeccC
Q 011693 318 RIGFVHFAERSSAMKALKNTEKYELDG-QALECSLAKP 354 (479)
Q Consensus 318 G~afV~F~~~~~A~~A~~~l~~~~~~g-~~l~v~~a~~ 354 (479)
-+|++.+.+.++|..|+-.+|++.+.. ..|+|+|++.
T Consensus 453 kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 453 KMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred ceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 599999999999999999999999986 4899999864
No 51
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.67 E-value=2.6e-15 Score=125.68 Aligned_cols=217 Identities=18% Similarity=0.217 Sum_probs=133.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeC-CCCCCCcceEEEEeCCHHHHHHHHHHhCCCccC---CeEEE
Q 011693 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKG-KDSSENKGFAFVTFRNVELASKAIDKLNNTEFK---GKKIR 174 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~-~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~---g~~i~ 174 (479)
..-+||||.+||.++...+|..+|..|--.+.+.|... +.....+-+|||+|.+..+|..|+.+|||..|+ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 34689999999999999999999999976666666543 222345689999999999999999999999986 78999
Q ss_pred EeecccccccccCCCCCCC-CHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhH----HHHH---HH---
Q 011693 175 CSTSQAKYRLFIGNIPRNW-GSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKC----AEYS---RQ--- 243 (479)
Q Consensus 175 v~~~~~~~~l~v~~l~~~~-~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~----a~~a---~~--- 243 (479)
|..++++.+..-......- ...-|. ..++.+.++++... +... +.
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~------------------------~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~ 167 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALV------------------------IDNRNKEQRKSADDQHDEGLSDPDELQEPG 167 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCcccc------------------------ccccChhhcccchhhccccccCccccCCcc
Confidence 9998876543322211100 000000 00000111100000 0000 00
Q ss_pred ---hccCCCcc-cCCCCCeeeeCCCCCC-------CCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCC
Q 011693 244 ---KMTNPNFK-LGTNAPTVSWADPRNV-------DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKP 312 (479)
Q Consensus 244 ---~~~~~~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~ 312 (479)
.+....+. ...-.....|+.+... -.+....+.+|||.||..++|+++|+.+|+.|-....++|...
T Consensus 168 ~a~al~~~~~t~~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~-- 245 (284)
T KOG1457|consen 168 NADALKENDTTKSEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR-- 245 (284)
T ss_pred ccccCCCccccchhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--
Confidence 00000000 0000000111111100 0023334689999999999999999999999977666666432
Q ss_pred CCCcccEEEEEeCChHHHHHHHHHhCCceec
Q 011693 313 GQEKNRIGFVHFAERSSAMKALKNTEKYELD 343 (479)
Q Consensus 313 ~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~ 343 (479)
++. ..|||+|++.+.|..|+..|+|..|.
T Consensus 246 ~g~--~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 246 GGM--PVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred CCc--ceEeecHHHHHHHHHHHHHhhcceec
Confidence 222 48999999999999999999987663
No 52
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=1.8e-16 Score=134.35 Aligned_cols=78 Identities=28% Similarity=0.638 Sum_probs=72.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 179 (479)
-++|||++|+|.++.+.|+++|++||+|+++.|+.|+.|++||||+||+|++.++|.+|++ -.+-.|+||+..|..+.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccchhh
Confidence 4689999999999999999999999999999999999999999999999999999999995 45677999999887663
No 53
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=9.1e-16 Score=130.14 Aligned_cols=79 Identities=28% Similarity=0.504 Sum_probs=74.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccC
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (479)
-++|||++|+|.++.+.|+++|++||.|+++.|+.|+.++++|||+||+|.+.++|.+|++.. +-.|+||+..|.+|.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchhhh
Confidence 389999999999999999999999999999999999999999999999999999999999864 4589999999999876
No 54
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.64 E-value=1.2e-15 Score=110.94 Aligned_cols=70 Identities=40% Similarity=0.840 Sum_probs=67.3
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEE
Q 011693 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (479)
Q Consensus 104 l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~ 174 (479)
|||+|||+++|+++|+++|++||.|..+.++.+ .++.++++|||+|.+.++|.+|++.+++..|.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 5789999999999999999999999999999999985
No 55
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.63 E-value=1.7e-15 Score=110.20 Aligned_cols=70 Identities=29% Similarity=0.563 Sum_probs=66.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEE
Q 011693 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (479)
Q Consensus 278 l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~ 348 (479)
|||+|||.++|+++|+++|++||.|..+.+..+ ..+.++++|||+|.+.++|.+|+..|++..|.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 5556689999999999999999999999999999986
No 56
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=1.2e-15 Score=129.87 Aligned_cols=82 Identities=29% Similarity=0.474 Sum_probs=79.4
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEecc
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (479)
...+|.|.||+.++++.+|+++|.+||.|.+|.|.+|+.++.+||||||+|.+.++|.+||..|||+-++.-.|+|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 011693 354 PQ 355 (479)
Q Consensus 354 ~~ 355 (479)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 86
No 57
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.62 E-value=1.6e-15 Score=143.85 Aligned_cols=84 Identities=23% Similarity=0.340 Sum_probs=79.4
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEec
Q 011693 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
...++|||+|||+++|+++|+++|+.||.|++|+|+.+..++.++|||||+|.+.++|.+||..||+..|.+++|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCC
Q 011693 353 KPQA 356 (479)
Q Consensus 353 ~~~~ 356 (479)
++..
T Consensus 185 ~p~~ 188 (346)
T TIGR01659 185 RPGG 188 (346)
T ss_pred cccc
Confidence 7643
No 58
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=7.9e-16 Score=132.02 Aligned_cols=167 Identities=26% Similarity=0.445 Sum_probs=129.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecccc
Q 011693 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (479)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~ 181 (479)
..|||++||+.+.+.+|..||..||.|..|.+. .||+||+|.+.-+|..|+..+++..|.+-.+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 469999999999999999999999999999875 458999999999999999999999999988888777632
Q ss_pred cccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCeeee
Q 011693 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261 (479)
Q Consensus 182 ~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 261 (479)
..-. +.+.+ +.+.. |
T Consensus 74 ~~~~------------------------------------g~~~~--------------------------g~r~~---~ 88 (216)
T KOG0106|consen 74 RRGR------------------------------------GRPRG--------------------------GDRRS---D 88 (216)
T ss_pred cccc------------------------------------CCCCC--------------------------CCccc---h
Confidence 1100 00000 00000 0
Q ss_pred CCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCce
Q 011693 262 ADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE 341 (479)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~ 341 (479)
..... ........|+|.||+..+.+.+|.++|.++|.+....+. ++++||+|.+.++|.+|+..|++..
T Consensus 89 ~~~~~---~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~--------~~~~~v~Fs~~~da~ra~~~l~~~~ 157 (216)
T KOG0106|consen 89 SRRYR---PPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR--------RNFAFVEFSEQEDAKRALEKLDGKK 157 (216)
T ss_pred hhccC---CcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh--------ccccceeehhhhhhhhcchhccchh
Confidence 00000 011123789999999999999999999999999665551 5799999999999999999999999
Q ss_pred ecCeEEEEEec
Q 011693 342 LDGQALECSLA 352 (479)
Q Consensus 342 ~~g~~l~v~~a 352 (479)
+.++.|.+...
T Consensus 158 ~~~~~l~~~~~ 168 (216)
T KOG0106|consen 158 LNGRRISVEKN 168 (216)
T ss_pred hcCceeeeccc
Confidence 99999999444
No 59
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=3.1e-15 Score=127.30 Aligned_cols=82 Identities=29% Similarity=0.496 Sum_probs=79.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 179 (479)
+.++|.|.|||.++++++|++||.+||.|..|.|.+|+.||.++|||||.|.+.++|.+||+.|||.-+..-.|+|.++.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 011693 180 AK 181 (479)
Q Consensus 180 ~~ 181 (479)
+.
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 64
No 60
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=3.3e-15 Score=113.84 Aligned_cols=79 Identities=24% Similarity=0.356 Sum_probs=76.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEecc
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (479)
+++|||+||++.+++++|.++|+++|.|..|.+-.|+.+..+-|||||+|.+.++|..|++-+++..++.++|.+.|..
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 3899999999999999999999999999999999999999999999999999999999999999999999999999864
No 61
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.58 E-value=3.5e-15 Score=123.46 Aligned_cols=83 Identities=27% Similarity=0.482 Sum_probs=78.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEec
Q 011693 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
.....|.|-||.+-+|.++|+.+|++||.|.+|.|+.|+.+..++|||||.|....+|+.|+.+|+|..|+|+.|.|.+|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 011693 353 KPQ 355 (479)
Q Consensus 353 ~~~ 355 (479)
+-.
T Consensus 91 ryg 93 (256)
T KOG4207|consen 91 RYG 93 (256)
T ss_pred hcC
Confidence 543
No 62
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=6.6e-15 Score=130.44 Aligned_cols=89 Identities=22% Similarity=0.371 Sum_probs=79.7
Q ss_pred CCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEE
Q 011693 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (479)
Q Consensus 270 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 349 (479)
+.....++|+|.|||+...+-||+.+|.+||.|.+|.|+.+..+. |||+||+|++.++|++|-.+||+..|.||+|.|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGS--KGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGS--KGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCC--CccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 334445899999999999999999999999999999999987554 699999999999999999999999999999999
Q ss_pred EeccCCCccCC
Q 011693 350 SLAKPQADQKS 360 (479)
Q Consensus 350 ~~a~~~~~~~~ 360 (479)
..|..+.....
T Consensus 169 n~ATarV~n~K 179 (376)
T KOG0125|consen 169 NNATARVHNKK 179 (376)
T ss_pred eccchhhccCC
Confidence 99988755443
No 63
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.57 E-value=9.5e-15 Score=106.03 Aligned_cols=70 Identities=44% Similarity=0.819 Sum_probs=65.2
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEE
Q 011693 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (479)
Q Consensus 104 l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~ 174 (479)
|||+|||+++|+++|+++|+.||.|..|.+..++. +.++++|||+|.+.++|.+|++.+++..|.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 89999999999999999999999998999999884
No 64
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.57 E-value=1.2e-14 Score=105.51 Aligned_cols=70 Identities=31% Similarity=0.565 Sum_probs=64.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEE
Q 011693 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (479)
Q Consensus 278 l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~ 348 (479)
|||+|||+++++++|+++|+.||.|..+++..+++ +.++++|||+|.+.++|.+|+..+++..|+|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999988 67799999999999999999999999999999985
No 65
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.57 E-value=3e-14 Score=134.66 Aligned_cols=169 Identities=29% Similarity=0.545 Sum_probs=124.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 180 (479)
.++|||+|||+++|+++|+++|..||.|..|.+..++.+++++|||||+|.+.++|..|++.+++..|.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999998999999999999999999999999999999999999998653
Q ss_pred --ccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCe
Q 011693 181 --KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT 258 (479)
Q Consensus 181 --~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 258 (479)
........+ +...+.. .
T Consensus 195 ~~~~~~~~~~~--------~~~~~~~---------------------------------------~-------------- 213 (306)
T COG0724 195 ASQPRSELSNN--------LDASFAK---------------------------------------K-------------- 213 (306)
T ss_pred ccccccccccc--------cchhhhc---------------------------------------c--------------
Confidence 000000000 0000000 0
Q ss_pred eeeCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHH
Q 011693 259 VSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335 (479)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~ 335 (479)
..............+++.+++..++...+..+|..+|.+..+.+...........+.++.+.....+...+.
T Consensus 214 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 214 -----LSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred -----ccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 000001112234789999999999999999999999999888887777555444444444444444444433
No 66
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=1.9e-14 Score=105.44 Aligned_cols=80 Identities=24% Similarity=0.426 Sum_probs=74.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccC
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (479)
++.|||+|||+++|.+++.++|.+||.|..|+|-..+.+ +|.|||.|++..+|++|+..|++..+.++.|.|-+..+
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 479999999999999999999999999999999888766 78999999999999999999999999999999998876
Q ss_pred CCc
Q 011693 355 QAD 357 (479)
Q Consensus 355 ~~~ 357 (479)
...
T Consensus 95 ~~~ 97 (124)
T KOG0114|consen 95 EDA 97 (124)
T ss_pred HHH
Confidence 543
No 67
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=8.3e-15 Score=111.70 Aligned_cols=81 Identities=17% Similarity=0.345 Sum_probs=77.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
...++||||+||++-+||++|.++|+++|+|..|.+=.|+.+..+-|||||+|-+.++|..|+..++++.|..+.|+|.+
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred c
Q 011693 178 S 178 (479)
Q Consensus 178 ~ 178 (479)
.
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 5
No 68
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.55 E-value=2.5e-14 Score=126.18 Aligned_cols=76 Identities=22% Similarity=0.340 Sum_probs=70.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccCC
Q 011693 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 355 (479)
++|||+|||+.+|+++|+++|+.||.|.+|+|+.++. ++|||||+|.+.++|..||. ||+..|.|+.|.|.++..-
T Consensus 5 rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 5 RTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 7999999999999999999999999999999998874 36899999999999999996 9999999999999997644
No 69
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.55 E-value=2.7e-14 Score=125.97 Aligned_cols=77 Identities=18% Similarity=0.355 Sum_probs=71.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 180 (479)
.++|||+|||+++|+++|++||+.||.|.+|.|+.+.. ++|||||+|.++++|..|| .|++..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999999853 5799999999999999999 5999999999999998864
Q ss_pred c
Q 011693 181 K 181 (479)
Q Consensus 181 ~ 181 (479)
.
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 3
No 70
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=2.8e-14 Score=115.28 Aligned_cols=78 Identities=23% Similarity=0.374 Sum_probs=72.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccC
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (479)
.++|||+||+..+++.+|..+|..||.|..|.|-..+ .|||||+|+++.+|..|+..|+|..|+|..|+|.+++-
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 3899999999999999999999999999999998866 79999999999999999999999999999999999875
Q ss_pred CCc
Q 011693 355 QAD 357 (479)
Q Consensus 355 ~~~ 357 (479)
...
T Consensus 85 ~~r 87 (195)
T KOG0107|consen 85 RPR 87 (195)
T ss_pred Ccc
Confidence 543
No 71
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=7.1e-16 Score=124.97 Aligned_cols=81 Identities=27% Similarity=0.583 Sum_probs=77.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 179 (479)
++.-|||+|||+++||.+|...|++||.|+.|.|++|+.||+|+||||+.|.+..+...|+..|||..|.||.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred c
Q 011693 180 A 180 (479)
Q Consensus 180 ~ 180 (479)
.
T Consensus 114 ~ 114 (219)
T KOG0126|consen 114 N 114 (219)
T ss_pred c
Confidence 4
No 72
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.55 E-value=1e-13 Score=127.29 Aligned_cols=169 Identities=22% Similarity=0.351 Sum_probs=138.1
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCee
Q 011693 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (479)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (479)
..+.+||.|||.++.+.+|+++|....-.|+.|.++.| ..+++++||.|+|++++.+++|++.|+. +.+.++.+.+
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D--~~GK~rGcavVEFk~~E~~qKa~E~lnk--~~~~GR~l~v 118 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD--ESGKARGCAVVEFKDPENVQKALEKLNK--YEVNGRELVV 118 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc--cCCCcCCceEEEeeCHHHHHHHHHHhhh--ccccCceEEE
Confidence 34569999999999999999999977555999999998 8999999999999999999999999985 3445555544
Q ss_pred eeCCCC---------------------------------------------CCCC-------------------------
Q 011693 260 SWADPR---------------------------------------------NVDS------------------------- 269 (479)
Q Consensus 260 ~~~~~~---------------------------------------------~~~~------------------------- 269 (479)
+-.... ....
T Consensus 119 KEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfg 198 (608)
T KOG4212|consen 119 KEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFG 198 (608)
T ss_pred eccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhccc
Confidence 322110 0000
Q ss_pred -----------CCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhC
Q 011693 270 -----------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (479)
Q Consensus 270 -----------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~ 338 (479)
-..+...++||.||.+.+....|++.|.-.|.|+.|.+-.|+.+.. +|||.++|.++-+|.+||..|+
T Consensus 199 l~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s-~G~~vi~y~hpveavqaIsml~ 277 (608)
T KOG4212|consen 199 LSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNS-RGFAVIEYDHPVEAVQAISMLD 277 (608)
T ss_pred chhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecccccc-CCeeEEEecchHHHHHHHHhhc
Confidence 0011147899999999999999999999999999999999999954 8999999999999999999999
Q ss_pred CceecCeEEEEEecc
Q 011693 339 KYELDGQALECSLAK 353 (479)
Q Consensus 339 ~~~~~g~~l~v~~a~ 353 (479)
+.-+..++..+.+..
T Consensus 278 ~~g~~~~~~~~Rl~~ 292 (608)
T KOG4212|consen 278 RQGLFDRRMTVRLDR 292 (608)
T ss_pred cCCCccccceeeccc
Confidence 877777888777753
No 73
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=5.7e-14 Score=123.01 Aligned_cols=88 Identities=16% Similarity=0.340 Sum_probs=81.4
Q ss_pred CCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEE
Q 011693 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (479)
Q Consensus 270 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 349 (479)
....+-++|||.-|++++++..|+..|+.||.|+.|+|+.++.+++++|||||+|.+..+...|.+..++..|+|+.|.|
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 33455699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCc
Q 011693 350 SLAKPQAD 357 (479)
Q Consensus 350 ~~a~~~~~ 357 (479)
.+-.-+..
T Consensus 176 DvERgRTv 183 (335)
T KOG0113|consen 176 DVERGRTV 183 (335)
T ss_pred Eecccccc
Confidence 98765543
No 74
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=4.7e-14 Score=103.38 Aligned_cols=81 Identities=23% Similarity=0.418 Sum_probs=74.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
|...+.|||+|||+++|.+++.++|.+||.|..|+|-..+. .+|.|||.|.+..+|++|++.|++..+.++.|.|-+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 34567899999999999999999999999999999987654 599999999999999999999999999999999988
Q ss_pred cccc
Q 011693 178 SQAK 181 (479)
Q Consensus 178 ~~~~ 181 (479)
.++.
T Consensus 92 yq~~ 95 (124)
T KOG0114|consen 92 YQPE 95 (124)
T ss_pred cCHH
Confidence 7754
No 75
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=3.4e-14 Score=114.82 Aligned_cols=75 Identities=27% Similarity=0.499 Sum_probs=71.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 180 (479)
.++|||+||+.++++.+|..+|..||+|.+|+|...+ .|||||+|.++.+|..|+..|++..|.|..|+|+++.-
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 6899999999999999999999999999999998864 89999999999999999999999999999999998764
No 76
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=5e-14 Score=123.39 Aligned_cols=79 Identities=19% Similarity=0.423 Sum_probs=75.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 179 (479)
=+||||.-|+++++|..|+..|+.||+|..|+|+.|+.||+++|||||+|.+..+...|.+..++..|+|+.|.|.+-.
T Consensus 101 y~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 101 YKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVER 179 (335)
T ss_pred cceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999997543
No 77
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.51 E-value=2.7e-14 Score=118.24 Aligned_cols=81 Identities=23% Similarity=0.457 Sum_probs=77.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeec
Q 011693 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 178 (479)
..-.+|.|-||.+.+|.++|+.+|++||.|.+|.|..|+.|+.++|||||.|....+|+.|+++|++.+|+|+.|.|++|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred c
Q 011693 179 Q 179 (479)
Q Consensus 179 ~ 179 (479)
.
T Consensus 91 r 91 (256)
T KOG4207|consen 91 R 91 (256)
T ss_pred h
Confidence 5
No 78
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=3.4e-14 Score=125.96 Aligned_cols=80 Identities=30% Similarity=0.496 Sum_probs=74.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 179 (479)
..++|+|.|||+...+.||+.+|.+||+|.+|.|+.+. .-||||+||+|.++++|++|-++||+..|.||+|.|..+.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 46799999999999999999999999999999999975 4689999999999999999999999999999999999886
Q ss_pred cc
Q 011693 180 AK 181 (479)
Q Consensus 180 ~~ 181 (479)
..
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 53
No 79
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.50 E-value=1.2e-13 Score=119.75 Aligned_cols=78 Identities=22% Similarity=0.368 Sum_probs=72.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeec
Q 011693 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 178 (479)
+...+|||+||++++|+++|++||+.||+|.+|+|+++. ..++||||+|.++++|..|+ .|+|..|.++.|.|...
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 456899999999999999999999999999999999984 55689999999999999999 79999999999999886
Q ss_pred cc
Q 011693 179 QA 180 (479)
Q Consensus 179 ~~ 180 (479)
..
T Consensus 79 ~~ 80 (243)
T PLN03121 79 GQ 80 (243)
T ss_pred cc
Confidence 64
No 80
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=1.4e-13 Score=112.01 Aligned_cols=79 Identities=24% Similarity=0.477 Sum_probs=70.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccC
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (479)
+++|||+|||.++.+.+|.++|.+||.|..|.|-..... ..||||+|+++.+|+.||..-++..++|+.|+|.++..
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~---ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGP---PPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCC---CCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 479999999999999999999999999999988654322 36999999999999999999999999999999999864
Q ss_pred CC
Q 011693 355 QA 356 (479)
Q Consensus 355 ~~ 356 (479)
-.
T Consensus 83 gr 84 (241)
T KOG0105|consen 83 GR 84 (241)
T ss_pred CC
Confidence 43
No 81
>PLN03213 repressor of silencing 3; Provisional
Probab=99.48 E-value=1.4e-13 Score=128.33 Aligned_cols=77 Identities=21% Similarity=0.260 Sum_probs=71.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCCh--HHHHHHHHHhCCceecCeEEEEEec
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAER--SSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~--~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
..+|||+||++.+|+++|+.+|..||.|.+|.|++ .++ ||||||+|.+. .++.+||..||+..+.|+.|+|..|
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 37999999999999999999999999999999994 444 79999999987 7899999999999999999999999
Q ss_pred cCC
Q 011693 353 KPQ 355 (479)
Q Consensus 353 ~~~ 355 (479)
++.
T Consensus 86 KP~ 88 (759)
T PLN03213 86 KEH 88 (759)
T ss_pred cHH
Confidence 875
No 82
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.48 E-value=3.9e-12 Score=114.76 Aligned_cols=167 Identities=15% Similarity=0.224 Sum_probs=136.0
Q ss_pred cccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCeeee
Q 011693 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261 (479)
Q Consensus 182 ~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 261 (479)
..+.|++|-..+++.+|.+.++.||+ |..+..+.. +..+.|+|++.+.|+.|+.......+.+.+....+++
T Consensus 32 pvvhvr~l~~~v~eadl~eal~~fG~-i~yvt~~P~-------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~Ny 103 (494)
T KOG1456|consen 32 PVVHVRGLHQGVVEADLVEALSNFGP-IAYVTCMPH-------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNY 103 (494)
T ss_pred ceEEEeccccccchhHHHHHHhcCCc-eEEEEeccc-------cceeeeeeccccchhhheehhccCcccccCchhhccc
Confidence 45788999999999999999999999 887777765 6689999999999999999888888888888887777
Q ss_pred CCCCCCCC---CCCccccEEE--EcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHH
Q 011693 262 ADPRNVDS---SGASQVKAVY--VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (479)
Q Consensus 262 ~~~~~~~~---~~~~~~~~l~--V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~ 336 (479)
+....... ....+.+.|. |-|--+.+|.+.|..++..+|.|.+|.|++.. + -.|.|+|++.+.|++|..+
T Consensus 104 Stsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn--g---VQAmVEFdsv~~AqrAk~a 178 (494)
T KOG1456|consen 104 STSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN--G---VQAMVEFDSVEVAQRAKAA 178 (494)
T ss_pred chhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEecc--c---eeeEEeechhHHHHHHHhh
Confidence 64332221 2233344544 44555788999999999999999999998863 2 3799999999999999999
Q ss_pred hCCceecC--eEEEEEeccCCCccCCC
Q 011693 337 TEKYELDG--QALECSLAKPQADQKSA 361 (479)
Q Consensus 337 l~~~~~~g--~~l~v~~a~~~~~~~~~ 361 (479)
|||..|.. ++|+|.||+|...+...
T Consensus 179 lNGADIYsGCCTLKIeyAkP~rlnV~k 205 (494)
T KOG1456|consen 179 LNGADIYSGCCTLKIEYAKPTRLNVQK 205 (494)
T ss_pred cccccccccceeEEEEecCcceeeeee
Confidence 99998864 78999999998765443
No 83
>PLN03213 repressor of silencing 3; Provisional
Probab=99.47 E-value=1.7e-13 Score=127.67 Aligned_cols=77 Identities=21% Similarity=0.476 Sum_probs=72.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCH--HHHHHHHHHhCCCccCCeEEEEeec
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNV--ELASKAIDKLNNTEFKGKKIRCSTS 178 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~--~~A~~a~~~~~~~~~~g~~i~v~~~ 178 (479)
..+|||+||++++|+++|+.+|..||.|.+|.|+ +.|| ||||||+|.+. .++.+||..|++..|.|+.|+|..+
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 5789999999999999999999999999999999 4567 99999999987 7899999999999999999999999
Q ss_pred ccc
Q 011693 179 QAK 181 (479)
Q Consensus 179 ~~~ 181 (479)
++.
T Consensus 86 KP~ 88 (759)
T PLN03213 86 KEH 88 (759)
T ss_pred cHH
Confidence 865
No 84
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=6.6e-14 Score=116.99 Aligned_cols=85 Identities=31% Similarity=0.497 Sum_probs=81.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccC
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (479)
.++|||++|...+|+.-|...|-+||.|++|.|+.|..+.+.||||||+|.-.++|.+||..||...|.||.|+|.+|+|
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP 89 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKP 89 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCccC
Q 011693 355 QADQK 359 (479)
Q Consensus 355 ~~~~~ 359 (479)
..-..
T Consensus 90 ~kike 94 (298)
T KOG0111|consen 90 EKIKE 94 (298)
T ss_pred ccccC
Confidence 76543
No 85
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=1.4e-14 Score=117.53 Aligned_cols=79 Identities=16% Similarity=0.354 Sum_probs=75.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEecc
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (479)
+.-|||+|||+.+|+.+|.-+|++||.|++|.+++|+.|+.++||||+.|++..+..-|+..|||..|.||.|+|.-..
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999997654
No 86
>smart00362 RRM_2 RNA recognition motif.
Probab=99.45 E-value=6.8e-13 Score=96.65 Aligned_cols=72 Identities=32% Similarity=0.577 Sum_probs=67.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEE
Q 011693 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (479)
Q Consensus 277 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 350 (479)
+|+|+|||..+++++|+++|.+||.|..+.+..++ +.++|+|||+|.+.++|.+|+..+++..|.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999999887 5568999999999999999999999999999999874
No 87
>smart00362 RRM_2 RNA recognition motif.
Probab=99.44 E-value=7.8e-13 Score=96.32 Aligned_cols=72 Identities=38% Similarity=0.719 Sum_probs=67.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEe
Q 011693 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (479)
Q Consensus 103 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~ 176 (479)
+|||+|||..++.++|+++|..||.|..+.++.++ +.++++|||+|.+.++|.+|++.+++..+.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999876 7789999999999999999999999999999999873
No 88
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.44 E-value=6.1e-13 Score=115.40 Aligned_cols=76 Identities=17% Similarity=0.148 Sum_probs=69.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccC
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (479)
..+|||+||++.+|+++|+++|+.||.|.+|+|+++..+ ++||||+|.+.++|..||. |+|..|.+++|.|..+..
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et---~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEY---ACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCc---ceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 379999999999999999999999999999999998533 5799999999999999996 999999999999988754
No 89
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=3.7e-13 Score=103.66 Aligned_cols=86 Identities=14% Similarity=0.204 Sum_probs=80.1
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
.....+|||.++...+|+++|.+.|..||.|+++.+..|+.++-.+|||+|+|++.++|++|+..||+..|-|.+|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 33458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCc
Q 011693 352 AKPQAD 357 (479)
Q Consensus 352 a~~~~~ 357 (479)
+-.+..
T Consensus 149 ~Fv~gp 154 (170)
T KOG0130|consen 149 CFVKGP 154 (170)
T ss_pred EEecCC
Confidence 865443
No 90
>smart00360 RRM RNA recognition motif.
Probab=99.41 E-value=1.3e-12 Score=94.79 Aligned_cols=71 Identities=37% Similarity=0.761 Sum_probs=67.4
Q ss_pred EcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEe
Q 011693 106 IGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (479)
Q Consensus 106 V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~ 176 (479)
|+|||..+++++|+++|+.||.|..+.+..++.++.++++|||+|.+.++|.+|++.+++..+.++.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999998889999999999999999999999999999999999873
No 91
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=4.2e-13 Score=103.35 Aligned_cols=80 Identities=25% Similarity=0.482 Sum_probs=77.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 179 (479)
+...|||.++...+|+++|.+.|..||+|+.+.|-.|+.||..+|||.|+|.+.++|++|+..+|+..|.|..|.|.||-
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999874
No 92
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.41 E-value=3.5e-13 Score=109.70 Aligned_cols=79 Identities=25% Similarity=0.407 Sum_probs=76.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEecc
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (479)
..+|||+||+..++++.|+++|-+.|.|++++|++|+.+...+|||||+|.+.++|+-|++-||...|.||+|+|..+.
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 3799999999999999999999999999999999999999899999999999999999999999999999999999998
No 93
>smart00360 RRM RNA recognition motif.
Probab=99.41 E-value=1.2e-12 Score=94.99 Aligned_cols=71 Identities=35% Similarity=0.562 Sum_probs=67.0
Q ss_pred EcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEE
Q 011693 280 VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (479)
Q Consensus 280 V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 350 (479)
|+|||..+++++|+++|++||.|..+.+..++.+..++|+|||+|.+.++|..|+..|++..+.+++|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999999999988878889999999999999999999999999999999873
No 94
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=5.9e-13 Score=111.35 Aligned_cols=83 Identities=28% Similarity=0.568 Sum_probs=79.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 179 (479)
..++|||++|..++|+.-|...|-+||.|+.|.+..|.++.++|||+||+|...++|..||..+|..+|.||.|+|.++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 011693 180 AKY 182 (479)
Q Consensus 180 ~~~ 182 (479)
+.+
T Consensus 89 P~k 91 (298)
T KOG0111|consen 89 PEK 91 (298)
T ss_pred Ccc
Confidence 754
No 95
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=1.4e-13 Score=136.90 Aligned_cols=233 Identities=17% Similarity=0.193 Sum_probs=193.5
Q ss_pred CCCceEEEcCCCCCCCHH-HHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 99 PHGSEVYIGGIPHDASEH-DLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~-~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
.....+.+.++-+..... ..+..|+.+|.|..|++......-....+.++.+....+++.|. ...+.-+.++.+.|..
T Consensus 569 ~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat-~pa~~~~a~~~~av~~ 647 (881)
T KOG0128|consen 569 LERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESAT-VPAGGALANRSAAVGL 647 (881)
T ss_pred hhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcc-cccccccCCccccCCC
Confidence 345677888887775555 67889999999999998773333334448999999999999999 5788888888888876
Q ss_pred cccc----------------cccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHH
Q 011693 178 SQAK----------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYS 241 (479)
Q Consensus 178 ~~~~----------------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 241 (479)
+.+. .++||+||+..+.+.+|...|..++. +..+++... ...++.+|+||+.|.....+.++
T Consensus 648 ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~-~e~vqi~~h-~n~~~~rG~~Y~~F~~~~~~~aa 725 (881)
T KOG0128|consen 648 ADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGT-IEVVQIVIH-KNEKRFRGKAYVEFLKPEHAGAA 725 (881)
T ss_pred CCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccch-hhhHHHHHH-hhccccccceeeEeecCCchhhh
Confidence 6543 36899999999999999999999987 777777633 68899999999999999999999
Q ss_pred HHhccCCCcccCCCCCeeeeCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEE
Q 011693 242 RQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGF 321 (479)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~af 321 (479)
+......-+. ...|+|.|+|+..|.+.|+.+|..+|.+++++++..+.+.. +|.||
T Consensus 726 V~f~d~~~~g-----------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkp-kg~a~ 781 (881)
T KOG0128|consen 726 VAFRDSCFFG-----------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKP-KGKAR 781 (881)
T ss_pred hhhhhhhhhh-----------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhcccc-cccee
Confidence 8876543221 26899999999999999999999999999999888887766 89999
Q ss_pred EEeCChHHHHHHHHHhCCceecCeEEEEEeccCCCcc
Q 011693 322 VHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQ 358 (479)
Q Consensus 322 V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 358 (479)
|.|.+..+|.+++...+...+.-+.+.|..+.|....
T Consensus 782 v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~~K 818 (881)
T KOG0128|consen 782 VDYNTEADASRKVASVDVAGKRENNGEVQVSNPERDK 818 (881)
T ss_pred ccCCCcchhhhhcccchhhhhhhcCccccccCCcccc
Confidence 9999999999999998888888888999988874443
No 96
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.36 E-value=6e-12 Score=92.11 Aligned_cols=74 Identities=31% Similarity=0.572 Sum_probs=69.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 277 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
+|+|+|||..+++++|+++|..||.|..+.+..++.+ .++++|||+|.+.++|..|+..+++..+.+++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988877 4489999999999999999999999999999999874
No 97
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.36 E-value=7.7e-12 Score=91.53 Aligned_cols=74 Identities=41% Similarity=0.772 Sum_probs=69.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 103 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
+|+|+|||+.+++++|+++|+.||.|..+.+..++.+ .++++|||+|.+.++|..|++.+++..+.++.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999999988754 7799999999999999999999999999999998863
No 98
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.35 E-value=6.1e-12 Score=86.49 Aligned_cols=56 Identities=32% Similarity=0.510 Sum_probs=52.1
Q ss_pred HHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEec
Q 011693 292 LKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 292 l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
|+++|++||.|.++.+..+. +++|||+|.+.++|..|+..||+..|.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999998876 589999999999999999999999999999999986
No 99
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.33 E-value=3.4e-12 Score=122.57 Aligned_cols=80 Identities=34% Similarity=0.662 Sum_probs=77.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecccc
Q 011693 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (479)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~ 181 (479)
+.|||+|||+++++++|..+|+..|.|.+++++.|+.||+++||+|++|.+.++|.+|++.|++..+.||+|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999988753
No 100
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=3.8e-11 Score=113.65 Aligned_cols=171 Identities=19% Similarity=0.310 Sum_probs=115.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC--CCCCcc---eEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKD--SSENKG---FAFVTFRNVELASKAIDKLNNTEFKGKK 172 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~g~~~g---~afV~F~~~~~A~~a~~~~~~~~~~g~~ 172 (479)
+.-+++|||++||++++|+.|...|..||.+.-=.-.+... .--.+| |+|+.|.++.++..-|.++.- .-..-.
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~~~~~y 334 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-GEGNYY 334 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-cccceE
Confidence 44578899999999999999999999999875332211111 113456 999999999999988876543 111122
Q ss_pred EEEeecccccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCccc
Q 011693 173 IRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKL 252 (479)
Q Consensus 173 i~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~ 252 (479)
++|.....+.+ .|. |....+... -||.+
T Consensus 335 f~vss~~~k~k-~VQ---------------------IrPW~laDs----------~fv~d-------------------- 362 (520)
T KOG0129|consen 335 FKVSSPTIKDK-EVQ---------------------IRPWVLADS----------DFVLD-------------------- 362 (520)
T ss_pred EEEecCccccc-cee---------------------EEeeEeccc----------hhhhc--------------------
Confidence 32322211111 011 111111110 00000
Q ss_pred CCCCCeeeeCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHh-hcCCeEEEEecCCCCCCCcccEEEEEeCChHHHH
Q 011693 253 GTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFE-HHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331 (479)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~ 331 (479)
......+.++|||++||.-++.++|..+|+ -||.|+.|-|-.|++-+-++|-|=|+|.+..+-.
T Consensus 363 ---------------~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi 427 (520)
T KOG0129|consen 363 ---------------HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYI 427 (520)
T ss_pred ---------------cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHH
Confidence 112233448999999999999999999999 6999999999999777777999999999999999
Q ss_pred HHHHH
Q 011693 332 KALKN 336 (479)
Q Consensus 332 ~A~~~ 336 (479)
+||.+
T Consensus 428 ~AIsa 432 (520)
T KOG0129|consen 428 KAISA 432 (520)
T ss_pred HHHhh
Confidence 99985
No 101
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.32 E-value=4.1e-12 Score=122.04 Aligned_cols=82 Identities=22% Similarity=0.433 Sum_probs=79.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccCC
Q 011693 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 355 (479)
..|||+|||+++++++|..+|+..|.|.+++++.|+.+++++||||++|.+.++|..|++.||+..+.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred Cc
Q 011693 356 AD 357 (479)
Q Consensus 356 ~~ 357 (479)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 102
>smart00361 RRM_1 RNA recognition motif.
Probab=99.31 E-value=8.6e-12 Score=89.92 Aligned_cols=62 Identities=16% Similarity=0.350 Sum_probs=55.1
Q ss_pred HHHHHHHHh----hcCCeEEEE-ecCCCCC--CCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEE
Q 011693 289 QDQLKKLFE----HHGRITKVV-VPPAKPG--QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (479)
Q Consensus 289 ~~~l~~~F~----~~G~v~~v~-i~~~~~~--~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 350 (479)
+++|+++|+ +||.|.+|. |+.++.+ +.++|||||+|.+.++|.+|+..||+..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 568888888 999999995 6666655 7789999999999999999999999999999999873
No 103
>smart00361 RRM_1 RNA recognition motif.
Probab=99.30 E-value=1.3e-11 Score=88.90 Aligned_cols=61 Identities=26% Similarity=0.470 Sum_probs=56.1
Q ss_pred HHHHHHHHH----hcCCeeEEE-EeeCCCC--CCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Q 011693 115 EHDLRDFCQ----SIGEVTEVR-IMKGKDS--SENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (479)
Q Consensus 115 ~~~l~~~f~----~~G~v~~v~-i~~~~~~--g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v 175 (479)
+++|+++|+ +||.|.+|. |+.++.+ ++++|||||+|.+.++|.+|+..||+..+.||.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578889998 999999996 7777777 999999999999999999999999999999999986
No 104
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.28 E-value=1.6e-11 Score=115.86 Aligned_cols=80 Identities=30% Similarity=0.546 Sum_probs=77.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccC
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (479)
..+|||+|||+.+|+++|+++|.+||.|..|.|..++.++.++|||||+|.+.++|..|+..+++..|.|++|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 48999999999999999999999999999999999998888999999999999999999999999999999999999764
No 105
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.27 E-value=9e-12 Score=114.45 Aligned_cols=181 Identities=20% Similarity=0.292 Sum_probs=142.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 179 (479)
..+++|++++.+.+.+.++..++..+|.+..+.+........++++++|.|...+.+..||.......+.++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46899999999999999999999999998888888877788999999999999999999996433345555555433221
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCee
Q 011693 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (479)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (479)
... +.+. .
T Consensus 167 ~~~-~~~~-----------------------------n------------------------------------------ 174 (285)
T KOG4210|consen 167 RRG-LRPK-----------------------------N------------------------------------------ 174 (285)
T ss_pred ccc-cccc-----------------------------c------------------------------------------
Confidence 110 0000 0
Q ss_pred eeCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCC
Q 011693 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (479)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~ 339 (479)
.............++|.+|+.+++.++|+.+|..+|.|..++++.++.++.++|||||.|.+...+..++.. ..
T Consensus 175 -----~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~ 248 (285)
T KOG4210|consen 175 -----KLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QT 248 (285)
T ss_pred -----hhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-cc
Confidence 000000111124555999999999999999999999999999999999999999999999999999999987 78
Q ss_pred ceecCeEEEEEeccCCCcc
Q 011693 340 YELDGQALECSLAKPQADQ 358 (479)
Q Consensus 340 ~~~~g~~l~v~~a~~~~~~ 358 (479)
..+.++++.+.+..+....
T Consensus 249 ~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 249 RSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred CcccCcccccccCCCCccc
Confidence 8899999999998877543
No 106
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.23 E-value=5.3e-10 Score=110.43 Aligned_cols=77 Identities=25% Similarity=0.509 Sum_probs=72.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccC
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (479)
+++|||+.|+.++++.+|+++|+.||.|.+|.++.. ||||||......+|.+|+.+|++..+..+.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 689999999999999999999999999999999886 59999999999999999999999999999999999965
Q ss_pred CCc
Q 011693 355 QAD 357 (479)
Q Consensus 355 ~~~ 357 (479)
...
T Consensus 495 ~G~ 497 (894)
T KOG0132|consen 495 KGP 497 (894)
T ss_pred CCc
Confidence 543
No 107
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.23 E-value=5.2e-11 Score=81.84 Aligned_cols=56 Identities=43% Similarity=0.748 Sum_probs=51.0
Q ss_pred HHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeec
Q 011693 118 LRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (479)
Q Consensus 118 l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 178 (479)
|+++|++||.|..|.+..+. +++|||+|.+.++|.+|++.||+..+.|++|+|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999998763 689999999999999999999999999999999875
No 108
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.23 E-value=6.8e-11 Score=112.93 Aligned_cols=73 Identities=27% Similarity=0.467 Sum_probs=65.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v 175 (479)
....++|+|-|||.++++++|+.+|+.||+|..|+.-+. .++.+||+|-+.-+|+.|++.|+...|.|+.|+.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIKR 144 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC
Confidence 345789999999999999999999999999999765443 5899999999999999999999999999998883
No 109
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.1e-11 Score=111.23 Aligned_cols=85 Identities=18% Similarity=0.376 Sum_probs=80.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
.++...|||--|.+-+|.++|.-+|+.||+|.+|.|++|..||.+..||||+|.+.+++++|.=+|++..|..+.|.|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccc
Q 011693 178 SQAKY 182 (479)
Q Consensus 178 ~~~~~ 182 (479)
+++-.
T Consensus 316 SQSVs 320 (479)
T KOG0415|consen 316 SQSVS 320 (479)
T ss_pred hhhhh
Confidence 87643
No 110
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.22 E-value=1.7e-11 Score=107.21 Aligned_cols=72 Identities=29% Similarity=0.617 Sum_probs=68.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccCC
Q 011693 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 355 (479)
.+|||+|||..+++.+|+.+|++||+|.+|.|++ .||||..++...|..||+.||+.+|+|..|.|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK--------NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK--------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec--------ccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 5799999999999999999999999999999986 49999999999999999999999999999999998876
No 111
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.21 E-value=3.4e-09 Score=104.84 Aligned_cols=75 Identities=27% Similarity=0.541 Sum_probs=71.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 179 (479)
.++||||++|+..+++.+|+.+|+.||.|.+|.++.. ++||||.+.+..+|.+||.+|++..+..+.|+|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 5789999999999999999999999999999999764 8899999999999999999999999999999999986
Q ss_pred c
Q 011693 180 A 180 (479)
Q Consensus 180 ~ 180 (479)
.
T Consensus 494 g 494 (894)
T KOG0132|consen 494 G 494 (894)
T ss_pred c
Confidence 4
No 112
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.20 E-value=1.4e-10 Score=110.79 Aligned_cols=81 Identities=26% Similarity=0.514 Sum_probs=69.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccCC
Q 011693 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 355 (479)
..|||+|||.+++..+|+++|..||.|+...|....-++....||||+|.+.+++..||.+ +-..|++++|.|+..++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 4599999999999999999999999999988877653344348999999999999999996 688899999999887665
Q ss_pred Cc
Q 011693 356 AD 357 (479)
Q Consensus 356 ~~ 357 (479)
..
T Consensus 368 ~~ 369 (419)
T KOG0116|consen 368 FR 369 (419)
T ss_pred cc
Confidence 43
No 113
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.16 E-value=3.2e-10 Score=110.39 Aligned_cols=163 Identities=12% Similarity=0.094 Sum_probs=108.6
Q ss_pred cCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccC----CCcccCC-------
Q 011693 186 IGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTN----PNFKLGT------- 254 (479)
Q Consensus 186 v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~----~~~~~~~------- 254 (479)
++..+.+.+..+++++|...- |....|..+ +-.....|-++|.|....++..|++.-.. ..+.+..
T Consensus 316 ~~gm~fn~~~nd~rkfF~g~~--~~~~~l~~~-~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g~~~~~ 392 (944)
T KOG4307|consen 316 YKGMEFNNDFNDGRKFFPGRN--AQSTDLSEN-RVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPGNLGRN 392 (944)
T ss_pred ecccccccccchhhhhcCccc--ccccchhhh-hcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCCccccc
Confidence 345666677777777766443 444444444 33444478999999999999999765331 1111100
Q ss_pred -------------------CCCeeeeCCCCCCCC--CCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEE-EEecCCCC
Q 011693 255 -------------------NAPTVSWADPRNVDS--SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITK-VVVPPAKP 312 (479)
Q Consensus 255 -------------------~~~~~~~~~~~~~~~--~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-v~i~~~~~ 312 (479)
+.+....+..+.... .......+|||..||..++..++.++|...-.|++ |.|.+...
T Consensus 393 ~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~ 472 (944)
T KOG4307|consen 393 GAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPT 472 (944)
T ss_pred cCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCc
Confidence 000000011111011 12223689999999999999999999999877777 77777666
Q ss_pred CCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEec
Q 011693 313 GQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 313 ~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
+.. ++.|||.|..++++..|+..-+.+.++.|.|+|.-.
T Consensus 473 ~~~-~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 473 DLL-RPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred ccc-cchhhheeccccccchhhhcccccccCceEEEeech
Confidence 655 889999999999999998877788888888888654
No 114
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=3.6e-11 Score=103.80 Aligned_cols=86 Identities=21% Similarity=0.444 Sum_probs=80.6
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Q 011693 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (479)
Q Consensus 96 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v 175 (479)
..-+++|.|||-.||.+..+.+|...|-.||.|++.++..|+.|..||.|+||.|.++.+|..||..+||..|.-++|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccc
Q 011693 176 STSQAK 181 (479)
Q Consensus 176 ~~~~~~ 181 (479)
...+++
T Consensus 360 QLKRPk 365 (371)
T KOG0146|consen 360 QLKRPK 365 (371)
T ss_pred hhcCcc
Confidence 766554
No 115
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.14 E-value=1.9e-09 Score=105.08 Aligned_cols=250 Identities=12% Similarity=0.048 Sum_probs=139.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeec
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTE-VRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~-v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 178 (479)
....|||..||..+++.++.++|...-.|++ |.|... -+++.++-|||.|.+++++.+|+...+.+.+..|.|+|...
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 3568999999999999999999999888888 555554 46889999999999999999999777788888899999755
Q ss_pred ccccc-------------------------------------cccCCCC-CCCCHHHHHHHHHhhCCCee--EEEEeecC
Q 011693 179 QAKYR-------------------------------------LFIGNIP-RNWGSEDLQKVVSEVGPGVT--GVELVKDM 218 (479)
Q Consensus 179 ~~~~~-------------------------------------l~v~~l~-~~~~~~~l~~~f~~~g~~i~--~~~~~~~~ 218 (479)
..+.. -.+.+++ ++.+... ......+..+. ..-+..
T Consensus 512 ~~~~m~~ek~~~~~~~lq~~~~dqre~~l~~p~~~v~~~~~~~~~~~~~~F~~~~rr--~~~e~~~~~~~~n~~p~~~-- 587 (944)
T KOG4307|consen 512 ADYAMMMEKNGEQGIKLQQSDKDQRETALDGPIPSVSMVPSKEQRSHEDDFDKKSRR--SRWENTSPIRSPNRSPLRR-- 587 (944)
T ss_pred hhHHHHHHHhHHHHHHHhhhhhHHHHHhhcCCccchhhhhhhhhhccCcccccchHH--HHhhhcCCccCcccccccc--
Confidence 43210 0111222 1222221 22222222111 111222
Q ss_pred CCCCCCceEEEEEeCCHhHHHHHH----HhccCCCcccCCCCCeeeeCCCCCCCC----------CCCccccEEEEcCCC
Q 011693 219 KNSSNNRGFAFIEYHNHKCAEYSR----QKMTNPNFKLGTNAPTVSWADPRNVDS----------SGASQVKAVYVKNLP 284 (479)
Q Consensus 219 ~~~~~~~g~~fv~f~~~~~a~~a~----~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~V~nLp 284 (479)
.+.++++.-++|.|.+...+..-. ..+++-.|..... ....|...+.... .......-+++..|+
T Consensus 588 dN~~~~~~~~~v~~~n~p~~r~~~~~~~~~vnn~pF~m~~~-~~~~~~sekn~Pa~~~~~~~~gv~~~p~v~~~~~~~l~ 666 (944)
T KOG4307|consen 588 DNRDRSRSRSPVRRRNSPRRREEHTRWCVQVNNVPFRMKDE-ELLEWFSEKNRPAKLTRTFYDGVASDPWVAEFSSESLM 666 (944)
T ss_pred ccCCcccccCccccCCCccccchhhhhhhcccCcceeecch-hhhhhhcccCCcccccccccCCCCCCcccccccccccc
Confidence 256677788899988766654433 2333333322211 1112211111100 000001122222222
Q ss_pred CCCCHHHHHHHHhhc-CCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccCCCc
Q 011693 285 RNVTQDQLKKLFEHH-GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQAD 357 (479)
Q Consensus 285 ~~~t~~~l~~~F~~~-G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 357 (479)
. +-.-.|..+|.-- -.+..+.-+... ...+-|.-+++|.+.-..+.||...+...+++..+.+.-+.++..
T Consensus 667 ~-~r~~~~g~l~tg~~lr~~~i~~~~~~-~~~~~g~~~~e~~~~~~ee~a~~~~~~~~an~~~~fn~p~~~~gs 738 (944)
T KOG4307|consen 667 K-RRSFGIGTLCTGRTLRLRYIDNAKAD-EILKIGDVYGEGKRQMNEEAALQHEVAEKANPPSFFNAPAATRGS 738 (944)
T ss_pred c-ccCCCccccccCcccccchhhhhhhc-cccccccceeccCCccchhHHHHHHhhhhccCCCccccccccccc
Confidence 2 1111222222210 001111111111 112247889999999999999999999999999988877766554
No 116
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.13 E-value=4.9e-11 Score=108.12 Aligned_cols=142 Identities=23% Similarity=0.297 Sum_probs=111.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhc----CCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEE---
Q 011693 103 EVYIGGIPHDASEHDLRDFCQSI----GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC--- 175 (479)
Q Consensus 103 ~l~V~nLp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v--- 175 (479)
.|.+++||++||+.++.+||..- |.++.|.+++.+ .|+..|-|||.|..+++|..||.+ |...|.-|.|.+
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRS 240 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHH
Confidence 57889999999999999999632 245566666654 499999999999999999999953 433333333332
Q ss_pred ----------------------------------eecccccccccCCCCCCCCHHHHHHHHHhhCCCeeE--EEEeecCC
Q 011693 176 ----------------------------------STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTG--VELVKDMK 219 (479)
Q Consensus 176 ----------------------------------~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~--~~~~~~~~ 219 (479)
-...++.+|.+++||...+.++|..+|..|...|.. +.++. .
T Consensus 241 TaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~--N 318 (508)
T KOG1365|consen 241 TAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVL--N 318 (508)
T ss_pred hHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEE--c
Confidence 222345678999999999999999999999876666 44444 4
Q ss_pred CCCCCceEEEEEeCCHhHHHHHHHhccCC
Q 011693 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNP 248 (479)
Q Consensus 220 ~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 248 (479)
..|++.|-|||+|.+.+.|..|..+.+++
T Consensus 319 ~qGrPSGeAFIqm~nae~a~aaaqk~hk~ 347 (508)
T KOG1365|consen 319 GQGRPSGEAFIQMRNAERARAAAQKCHKK 347 (508)
T ss_pred CCCCcChhhhhhhhhhHHHHHHHHHHHHh
Confidence 89999999999999999999888877653
No 117
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.2e-10 Score=104.67 Aligned_cols=85 Identities=15% Similarity=0.315 Sum_probs=79.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEec
Q 011693 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
++.+.|||-.|.+-+|+++|.-+|+.||.|.+|.|++|..++.+--||||+|++.+++++|.=+|++..|+.++|+|.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 44589999999999999999999999999999999999999998899999999999999999999999999999999998
Q ss_pred cCCCc
Q 011693 353 KPQAD 357 (479)
Q Consensus 353 ~~~~~ 357 (479)
..-..
T Consensus 317 QSVsk 321 (479)
T KOG0415|consen 317 QSVSK 321 (479)
T ss_pred hhhhh
Confidence 76543
No 118
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=1.9e-11 Score=102.49 Aligned_cols=138 Identities=25% Similarity=0.347 Sum_probs=113.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
++..+||||.|+...++++-|.++|-+-|+|..|.|..+++ +..+ ||||.|.++-.+.-|++.+|+..+.++.|.|.
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~- 82 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT- 82 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcc-
Confidence 44578999999999999999999999999999999988865 5556 99999999999999999999999998888663
Q ss_pred cccccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCC
Q 011693 178 SQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP 257 (479)
Q Consensus 178 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~ 257 (479)
T Consensus 83 -------------------------------------------------------------------------------- 82 (267)
T KOG4454|consen 83 -------------------------------------------------------------------------------- 82 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeCCCCCCCCCCCccccEEEEcC----CCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHH
Q 011693 258 TVSWADPRNVDSSGASQVKAVYVKN----LPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333 (479)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~V~n----Lp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A 333 (479)
++.++ |...++.+.+...|+..+.|..+++..+.++. ++.++||.+-..-+.-.+
T Consensus 83 --------------------~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~r-nrn~~~~~~qr~~~~P~~ 141 (267)
T KOG4454|consen 83 --------------------LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGR-NRNFGFVTYQRLCAVPFA 141 (267)
T ss_pred --------------------cccCCCcchhhhhcchhhheeeecccCCCCCccccccccCC-ccCccchhhhhhhcCcHH
Confidence 33333 55667888899999999999999999998844 477888888665555556
Q ss_pred HHHhCC
Q 011693 334 LKNTEK 339 (479)
Q Consensus 334 ~~~l~~ 339 (479)
+....+
T Consensus 142 ~~~y~~ 147 (267)
T KOG4454|consen 142 LDLYQG 147 (267)
T ss_pred hhhhcc
Confidence 555444
No 119
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.07 E-value=3.8e-10 Score=94.41 Aligned_cols=81 Identities=23% Similarity=0.434 Sum_probs=76.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhc-CCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEecc
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHH-GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~-G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (479)
...++|..+|..+.+..|..+|.+| |.|..+++.+++.|+.++|||||+|++.+.|.-|-+.||++.|.++.|.|.+-.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 3789999999999999999999999 789999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 011693 354 PQ 355 (479)
Q Consensus 354 ~~ 355 (479)
|.
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 66
No 120
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.06 E-value=3.9e-09 Score=97.33 Aligned_cols=82 Identities=24% Similarity=0.410 Sum_probs=75.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccC
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (479)
.++|||++|++.++++.|+++|.+||.|.++.+++|+.++.+|||+||+|++.+...++|.. ..+.|+|+.|.++.|.+
T Consensus 6 ~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 6 SGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceeccC
Confidence 48999999999999999999999999999999999999999999999999999999998874 56789999999999887
Q ss_pred CCc
Q 011693 355 QAD 357 (479)
Q Consensus 355 ~~~ 357 (479)
+..
T Consensus 85 r~~ 87 (311)
T KOG4205|consen 85 RED 87 (311)
T ss_pred ccc
Confidence 764
No 121
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.06 E-value=6.7e-10 Score=92.97 Aligned_cols=82 Identities=28% Similarity=0.522 Sum_probs=75.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhc-CCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeec
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSI-GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 178 (479)
....++|..||.-+-+.+|..+|.+| |.|..+++-+++.||.|+|||||+|.+++.|.-|.+.||+..|.++.|.|..-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 45679999999999999999999999 78899999899999999999999999999999999999999999999999876
Q ss_pred ccc
Q 011693 179 QAK 181 (479)
Q Consensus 179 ~~~ 181 (479)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 554
No 122
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.05 E-value=1.1e-09 Score=105.89 Aligned_cols=151 Identities=22% Similarity=0.437 Sum_probs=120.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeec
Q 011693 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 178 (479)
-....|||++||..+++.++++++..||.+....++.+..+|.++||||.+|.++.....|+..|||..+.++.|.|..+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999776
Q ss_pred ccccc----------cccCCCCC-----------------CCCH-------------HHHHHHHHhhCCCeeEEEEeecC
Q 011693 179 QAKYR----------LFIGNIPR-----------------NWGS-------------EDLQKVVSEVGPGVTGVELVKDM 218 (479)
Q Consensus 179 ~~~~~----------l~v~~l~~-----------------~~~~-------------~~l~~~f~~~g~~i~~~~~~~~~ 218 (479)
-.... .-|..|+. -++. ++++.-+.+||. |..|.+.+..
T Consensus 367 ~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~-v~~v~ipr~~ 445 (500)
T KOG0120|consen 367 IVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGA-VRSVEIPRPY 445 (500)
T ss_pred hccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCc-eeEEecCCCC
Confidence 43210 00111111 1222 344556667888 8888887762
Q ss_pred --CCCCCCceEEEEEeCCHhHHHHHHHhccCCCc
Q 011693 219 --KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF 250 (479)
Q Consensus 219 --~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~ 250 (479)
.......|.-||+|.+.+++++|.+.|.+..|
T Consensus 446 ~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF 479 (500)
T KOG0120|consen 446 PDENPVPGTGKVFVEFADTEDSQRAMEELTGRKF 479 (500)
T ss_pred CCCCcCCCcccEEEEecChHHHHHHHHHccCcee
Confidence 23345567899999999999999999999765
No 123
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.02 E-value=6.9e-10 Score=105.66 Aligned_cols=83 Identities=22% Similarity=0.480 Sum_probs=77.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
...++.|||.+|...+...+|+.+|++||+|+-.+|+++..+--.+.|+||++.+.++|.+||+.||.+.|+|+.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 33467899999999999999999999999999999999987777889999999999999999999999999999999988
Q ss_pred ccc
Q 011693 178 SQA 180 (479)
Q Consensus 178 ~~~ 180 (479)
+.+
T Consensus 482 aKN 484 (940)
T KOG4661|consen 482 AKN 484 (940)
T ss_pred ccc
Confidence 764
No 124
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.02 E-value=1.1e-09 Score=93.38 Aligned_cols=82 Identities=26% Similarity=0.455 Sum_probs=73.4
Q ss_pred ccEEEEcCCCCCCCHHHHHH----HHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEE
Q 011693 275 VKAVYVKNLPRNVTQDQLKK----LFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~----~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 350 (479)
..+|||.||...+..++|+. +|++||.|.+|...... +.||-|||.|.+.+.|..|+..|+|+.|.|++++|.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~---KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTP---KMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCC---CccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 35999999999999999888 99999999999887543 458999999999999999999999999999999999
Q ss_pred eccCCCccC
Q 011693 351 LAKPQADQK 359 (479)
Q Consensus 351 ~a~~~~~~~ 359 (479)
||+....--
T Consensus 86 yA~s~sdii 94 (221)
T KOG4206|consen 86 YAKSDSDII 94 (221)
T ss_pred cccCccchh
Confidence 998766543
No 125
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.00 E-value=3e-10 Score=114.02 Aligned_cols=167 Identities=17% Similarity=0.257 Sum_probs=135.4
Q ss_pred hcCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEE
Q 011693 95 LALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (479)
Q Consensus 95 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~ 174 (479)
.++....++||++||+..+++.+|+..|..+|.|.+|.|...+. +.-.-|+||.|.+...+-+|+-.+.+..|..-.++
T Consensus 366 ~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r 444 (975)
T KOG0112|consen 366 LDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHR 444 (975)
T ss_pred ccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccc
Confidence 34455688999999999999999999999999999999987642 55667899999999999998877777665433333
Q ss_pred EeecccccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCC
Q 011693 175 CSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGT 254 (479)
Q Consensus 175 v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~ 254 (479)
+.+...
T Consensus 445 ~glG~~-------------------------------------------------------------------------- 450 (975)
T KOG0112|consen 445 IGLGQP-------------------------------------------------------------------------- 450 (975)
T ss_pred cccccc--------------------------------------------------------------------------
Confidence 321110
Q ss_pred CCCeeeeCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHH
Q 011693 255 NAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334 (479)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~ 334 (479)
....++.|+|++|+.++....|...|..||.|..|.+-... -||+|.|.+...|+.|+
T Consensus 451 ----------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq------~yayi~yes~~~aq~a~ 508 (975)
T KOG0112|consen 451 ----------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ------PYAYIQYESPPAAQAAT 508 (975)
T ss_pred ----------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC------cceeeecccCccchhhH
Confidence 01223799999999999999999999999999988775432 59999999999999999
Q ss_pred HHhCCceecC--eEEEEEeccCCCcc
Q 011693 335 KNTEKYELDG--QALECSLAKPQADQ 358 (479)
Q Consensus 335 ~~l~~~~~~g--~~l~v~~a~~~~~~ 358 (479)
..|.+..|++ ++|.|.|+.+....
T Consensus 509 ~~~rgap~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 509 HDMRGAPLGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred HHHhcCcCCCCCcccccccccCCCCC
Confidence 9999999986 78999999876544
No 126
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.98 E-value=5.1e-10 Score=96.33 Aligned_cols=166 Identities=19% Similarity=0.281 Sum_probs=114.9
Q ss_pred ccccCCCCCCCCHHH-H--HHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCee
Q 011693 183 RLFIGNIPRNWGSED-L--QKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (479)
Q Consensus 183 ~l~v~~l~~~~~~~~-l--~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (479)
.++++++-..+..+. | ...|+.+-. +....++++ ..+...+++|+.|.....-.++-..-+++.+ +...+..
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~-L~ktk~v~~--~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki--~~~~VR~ 172 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPS-LVKTKLVRD--RPQPIRPEAFESFKASDALLKAETEKEKKKI--GKPPVRL 172 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchh-hhhhhhhhc--CCCccCcccccCcchhhhhhhhccccccccc--cCcceee
Confidence 344454444433332 2 344444433 444445544 5566778899988776665555444444322 2222222
Q ss_pred ----eeCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHH
Q 011693 260 ----SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335 (479)
Q Consensus 260 ----~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~ 335 (479)
.|.++...... ....+||.+.|...++++.|-..|.+|-.....++++++.+++++||+||.|.+..++..|++
T Consensus 173 a~gtswedPsl~ew~--~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmr 250 (290)
T KOG0226|consen 173 AAGTSWEDPSLAEWD--EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMR 250 (290)
T ss_pred ccccccCCcccccCc--cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHH
Confidence 23333322211 223799999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCceecCeEEEEEeccCC
Q 011693 336 NTEKYELDGQALECSLAKPQ 355 (479)
Q Consensus 336 ~l~~~~~~g~~l~v~~a~~~ 355 (479)
.|++..++.++|++..+.-+
T Consensus 251 em~gkyVgsrpiklRkS~wk 270 (290)
T KOG0226|consen 251 EMNGKYVGSRPIKLRKSEWK 270 (290)
T ss_pred hhcccccccchhHhhhhhHH
Confidence 99999999999988766433
No 127
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=1.6e-09 Score=97.47 Aligned_cols=77 Identities=26% Similarity=0.484 Sum_probs=69.7
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHH-hCCceecCeEEEEE
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN-TEKYELDGQALECS 350 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~-l~~~~~~g~~l~v~ 350 (479)
....++|||++|-..+++.+|+++|.+||.|.+|+++..+ ++|||+|.+.++|+.|..+ +|...|+|++|+|.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 3445899999999999999999999999999999999875 7999999999999998876 46777899999999
Q ss_pred eccC
Q 011693 351 LAKP 354 (479)
Q Consensus 351 ~a~~ 354 (479)
|..+
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 9988
No 128
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.89 E-value=5.3e-09 Score=94.24 Aligned_cols=77 Identities=34% Similarity=0.542 Sum_probs=68.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHh-CCCccCCeEEEEe
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL-NNTEFKGKKIRCS 176 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~-~~~~~~g~~i~v~ 176 (479)
+...++|||++|-..+++.+|+++|-+||+|.+|.+... +++|||+|.+.++|++|.+.+ +...|.|++|.|.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 334678999999889999999999999999999999875 569999999999999988765 5556899999999
Q ss_pred eccc
Q 011693 177 TSQA 180 (479)
Q Consensus 177 ~~~~ 180 (479)
|..+
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 9887
No 129
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=1.6e-10 Score=115.49 Aligned_cols=134 Identities=24% Similarity=0.335 Sum_probs=117.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 180 (479)
..++||+||+..+.+.+|...|..+|.+..+.|....++++.+|+|||.|..++++.+||.. .-..+.|
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f-~d~~~~g---------- 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAF-RDSCFFG---------- 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhh-hhhhhhh----------
Confidence 46899999999999999999999999998888887778899999999999999999999964 4444444
Q ss_pred ccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCC
Q 011693 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP 248 (479)
Q Consensus 181 ~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 248 (479)
+..++|+++|+..|.+.++.++..+|. +...+++.. ..|+++|.++|.|.+..++.++.......
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn-~~~~~~vt~--r~gkpkg~a~v~y~~ea~~s~~~~s~d~~ 800 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGN-VTSLRLVTV--RAGKPKGKARVDYNTEADASRKVASVDVA 800 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCC-ccccchhhh--hccccccceeccCCCcchhhhhcccchhh
Confidence 567899999999999999999999998 888876655 78999999999999999999887766543
No 130
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.86 E-value=2.5e-08 Score=84.26 Aligned_cols=87 Identities=23% Similarity=0.398 Sum_probs=71.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEe-cCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceec---CeEEEEE
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV-PPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD---GQALECS 350 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i-~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~---g~~l~v~ 350 (479)
.++|||.+||.++-..+|..+|..|--.+...| +.++....++-+|||+|.+.++|.+|+.+|||..|+ +..|+|.
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 489999999999999999999999855444433 334444555679999999999999999999999997 7889999
Q ss_pred eccCCCccCCC
Q 011693 351 LAKPQADQKSA 361 (479)
Q Consensus 351 ~a~~~~~~~~~ 361 (479)
+|+....+...
T Consensus 114 lAKSNtK~kr~ 124 (284)
T KOG1457|consen 114 LAKSNTKRKRR 124 (284)
T ss_pred ehhcCcccccC
Confidence 99876655443
No 131
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.84 E-value=6.1e-09 Score=99.35 Aligned_cols=81 Identities=22% Similarity=0.366 Sum_probs=75.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEecc
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (479)
..+.|+|.+|...+...+|+.+|++||.|+-++|+.+..+.--+.|+||++.+.++|.+||..||...|.|+.|.|..++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 35899999999999999999999999999999999988776668999999999999999999999999999999999885
Q ss_pred C
Q 011693 354 P 354 (479)
Q Consensus 354 ~ 354 (479)
.
T Consensus 484 N 484 (940)
T KOG4661|consen 484 N 484 (940)
T ss_pred c
Confidence 3
No 132
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.80 E-value=2.1e-08 Score=88.64 Aligned_cols=83 Identities=28% Similarity=0.438 Sum_probs=76.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccC
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (479)
..+|+|.|||+.|++++|+++|..||.++.+-|..++.+.+ .|.|-|.|...++|.+|++.+|+..++|+.+++.+..+
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s-~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRS-LGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCC-CccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 37899999999999999999999999999999999988877 79999999999999999999999999999999988876
Q ss_pred CCcc
Q 011693 355 QADQ 358 (479)
Q Consensus 355 ~~~~ 358 (479)
....
T Consensus 162 ~~~~ 165 (243)
T KOG0533|consen 162 PSQS 165 (243)
T ss_pred cccc
Confidence 6554
No 133
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.77 E-value=6.7e-08 Score=72.85 Aligned_cols=78 Identities=21% Similarity=0.261 Sum_probs=67.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhc--CCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccC----CeEEEE
Q 011693 102 SEVYIGGIPHDASEHDLRDFCQSI--GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK----GKKIRC 175 (479)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~----g~~i~v 175 (479)
+||.|+|||...|.++|.+++... |...-+.+..|..++.+.|||||.|.+++.|.+-.+.+++..|. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 799999999999999999988653 67778889999999999999999999999999999999999885 455566
Q ss_pred eecc
Q 011693 176 STSQ 179 (479)
Q Consensus 176 ~~~~ 179 (479)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6554
No 134
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.77 E-value=5.4e-08 Score=73.35 Aligned_cols=80 Identities=23% Similarity=0.346 Sum_probs=71.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhc--CCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceec----CeEEEE
Q 011693 276 KAVYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD----GQALEC 349 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~----g~~l~v 349 (479)
++|.|+|||...|.++|.+++... |..-.+.++.|..+..+.|||||-|.+++.|.+-.+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999999774 67888999999999999999999999999999999999998875 466788
Q ss_pred EeccCC
Q 011693 350 SLAKPQ 355 (479)
Q Consensus 350 ~~a~~~ 355 (479)
.+|+-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 888654
No 135
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.75 E-value=4.5e-08 Score=86.61 Aligned_cols=81 Identities=20% Similarity=0.400 Sum_probs=74.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 179 (479)
...+|+|.|||+.+++++|+++|..||.+..+.|-.++ +|++.|+|-|.|...++|..|++.+++..+.|+.|++....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 45789999999999999999999999999999888886 69999999999999999999999999999999999987765
Q ss_pred cc
Q 011693 180 AK 181 (479)
Q Consensus 180 ~~ 181 (479)
+.
T Consensus 161 ~~ 162 (243)
T KOG0533|consen 161 SP 162 (243)
T ss_pred Cc
Confidence 43
No 136
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.71 E-value=6e-07 Score=82.02 Aligned_cols=86 Identities=19% Similarity=0.277 Sum_probs=79.1
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeE--------EEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceec
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRIT--------KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD 343 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~--------~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~ 343 (479)
.....+|||.+||..++..+|.++|.++|.|. .|.|.+++.+..+||-|.|.|.++..|+.||..+++..|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34457999999999999999999999999986 4889999999999999999999999999999999999999
Q ss_pred CeEEEEEeccCCCc
Q 011693 344 GQALECSLAKPQAD 357 (479)
Q Consensus 344 g~~l~v~~a~~~~~ 357 (479)
+..|+|.+|..+..
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999999987764
No 137
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.71 E-value=4.1e-09 Score=96.15 Aligned_cols=204 Identities=15% Similarity=0.177 Sum_probs=129.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC---CCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeec
Q 011693 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS---SENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (479)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 178 (479)
..|-|.||.+.+|.++|..||.-.|+|..+.|+.+... -.....|||.|.+...+..|- .|.++++-++.|.|.+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 47999999999999999999999999999999885432 234568999999999999888 78999998988888654
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCe
Q 011693 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT 258 (479)
Q Consensus 179 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 258 (479)
... +-+... +|..++.......++.. ..+......+.
T Consensus 87 ~~~-----------~~p~r~--af~~l~~~navprll~p------------------------------dg~Lp~~~~lt 123 (479)
T KOG4676|consen 87 GDE-----------VIPDRF--AFVELADQNAVPRLLPP------------------------------DGVLPGDRPLT 123 (479)
T ss_pred CCC-----------CCccHH--HHHhcCcccccccccCC------------------------------CCccCCCCccc
Confidence 321 111111 34443321110001000 00111111110
Q ss_pred ee------eCCCCCCCC-----CCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCCh
Q 011693 259 VS------WADPRNVDS-----SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAER 327 (479)
Q Consensus 259 ~~------~~~~~~~~~-----~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~ 327 (479)
.. ...++..++ .-..-..+|+|.+|+..+...++.+.|..+|.|...++..... .-+|.|+|...
T Consensus 124 ~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~----s~~c~~sf~~q 199 (479)
T KOG4676|consen 124 KINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSR----SSSCSHSFRKQ 199 (479)
T ss_pred cccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCC----CcchhhhHhhh
Confidence 00 000011110 0001126899999999999999999999999998877754432 34788999988
Q ss_pred HHHHHHHHHhCCceecCeEEEEEeccC
Q 011693 328 SSAMKALKNTEKYELDGQALECSLAKP 354 (479)
Q Consensus 328 ~~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (479)
.....|+. ++|..+.-....+.+.+|
T Consensus 200 ts~~halr-~~gre~k~qhsr~ai~kP 225 (479)
T KOG4676|consen 200 TSSKHALR-SHGRERKRQHSRRAIIKP 225 (479)
T ss_pred hhHHHHHH-hcchhhhhhhhhhhhcCc
Confidence 88888888 466666533333333333
No 138
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.65 E-value=8.1e-08 Score=86.68 Aligned_cols=80 Identities=29% Similarity=0.380 Sum_probs=73.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeE--------EEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeE
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRIT--------KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQA 346 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~--------~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~ 346 (479)
.+.|||.|||.++|.+++.++|++||.|. .|+|.++.++.. +|-|+|.|-..+++.-||..|++..|.|+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~l-KGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKL-KGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCc-cCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 36799999999999999999999999986 389999988555 999999999999999999999999999999
Q ss_pred EEEEeccCC
Q 011693 347 LECSLAKPQ 355 (479)
Q Consensus 347 l~v~~a~~~ 355 (479)
|+|..|+-.
T Consensus 213 ~rVerAkfq 221 (382)
T KOG1548|consen 213 LRVERAKFQ 221 (382)
T ss_pred EEEehhhhh
Confidence 999999654
No 139
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.64 E-value=4e-08 Score=94.33 Aligned_cols=72 Identities=32% Similarity=0.504 Sum_probs=67.1
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEE
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~ 348 (479)
.....+|+|-|||.+++.++|+.+|+.||.|..|+..+.+ +|.+||+|.|..+|++|+++|+...|.|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~-----~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK-----RGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc-----CceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4445899999999999999999999999999998887776 89999999999999999999999999999988
No 140
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.64 E-value=1.9e-08 Score=87.00 Aligned_cols=74 Identities=31% Similarity=0.401 Sum_probs=64.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC--------CCCcc----eEEEEeCCHHHHHHHHHHhCCCc
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS--------SENKG----FAFVTFRNVELASKAIDKLNNTE 167 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~--------g~~~g----~afV~F~~~~~A~~a~~~~~~~~ 167 (479)
....|||.+||+.....-|+++|+.||.|-.|.|.....+ |.++. -+||+|.+...|+++.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4678999999999999999999999999999999877554 33333 38899999999999999999999
Q ss_pred cCCeEE
Q 011693 168 FKGKKI 173 (479)
Q Consensus 168 ~~g~~i 173 (479)
|.|++-
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 998754
No 141
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.64 E-value=3.1e-08 Score=85.53 Aligned_cols=82 Identities=16% Similarity=0.380 Sum_probs=76.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
+.+..+||.+.|..+++.+-|...|++|-.....++++++.||+++||+||.|.++.++..|+..+++..++.|.|+++.
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred cc
Q 011693 178 SQ 179 (479)
Q Consensus 178 ~~ 179 (479)
+.
T Consensus 267 S~ 268 (290)
T KOG0226|consen 267 SE 268 (290)
T ss_pred hh
Confidence 54
No 142
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.63 E-value=9.7e-07 Score=79.66 Aligned_cols=77 Identities=13% Similarity=0.176 Sum_probs=68.3
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCC--eEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEE
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGR--ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~--v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 350 (479)
...++||+||-|++|+++|.+.+...|. |.+++++.++.++.+||||+|...+....++.++.|-.+.|.|..-.|.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 3479999999999999999999988775 7789999999999999999999999999999999999999998654443
No 143
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.63 E-value=7.1e-08 Score=92.53 Aligned_cols=76 Identities=25% Similarity=0.479 Sum_probs=65.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
..+|||+|||.+++..+|+++|+.||.|+...|......++...||||+|.+.++++.||+ .+...|.+++|.|+.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEE 363 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEe
Confidence 4469999999999999999999999999998887754334555999999999999999996 568889999998864
No 144
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.60 E-value=1.3e-07 Score=84.07 Aligned_cols=80 Identities=28% Similarity=0.397 Sum_probs=75.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccC
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (479)
...+||+|+.+.+|.++|..+|+.||.|..|.|+.++..+.++||+||+|.+.+.+..|+. |++..|.++.|.|.+..-
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r~ 179 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKRT 179 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeeee
Confidence 4799999999999999999999999999999999999998889999999999999999999 999999999999988765
Q ss_pred C
Q 011693 355 Q 355 (479)
Q Consensus 355 ~ 355 (479)
.
T Consensus 180 ~ 180 (231)
T KOG4209|consen 180 N 180 (231)
T ss_pred e
Confidence 5
No 145
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.56 E-value=4e-07 Score=64.90 Aligned_cols=70 Identities=26% Similarity=0.479 Sum_probs=48.5
Q ss_pred ceEEEcCCCCCCCHHHHHH----HHHhcC-CeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEe
Q 011693 102 SEVYIGGIPHDASEHDLRD----FCQSIG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (479)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~----~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~ 176 (479)
+.|+|.|||.+.+...|+. ++..|| +|.+|. .+.|+|.|.+.+.|.+|++.|++..+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 5799999999998877654 555665 777662 4679999999999999999999999999999999
Q ss_pred ecccc
Q 011693 177 TSQAK 181 (479)
Q Consensus 177 ~~~~~ 181 (479)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 87543
No 146
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.55 E-value=9.6e-08 Score=84.96 Aligned_cols=80 Identities=25% Similarity=0.420 Sum_probs=75.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeec
Q 011693 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 178 (479)
.+.+.|||+|+.+.+|.++|...|+.||.|..|.|.+++.++.++||+||+|.+.+.+..++. |++..|.++.|.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 356899999999999999999999999999999999999999999999999999999999996 9999999999999765
Q ss_pred c
Q 011693 179 Q 179 (479)
Q Consensus 179 ~ 179 (479)
.
T Consensus 178 r 178 (231)
T KOG4209|consen 178 R 178 (231)
T ss_pred e
Confidence 4
No 147
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.52 E-value=1.9e-06 Score=87.56 Aligned_cols=15 Identities=27% Similarity=0.315 Sum_probs=7.3
Q ss_pred CCCCCceEEEEEeCC
Q 011693 220 NSSNNRGFAFIEYHN 234 (479)
Q Consensus 220 ~~~~~~g~~fv~f~~ 234 (479)
..++.++|+--.|.+
T Consensus 897 l~g~q~~~~g~kfsd 911 (1282)
T KOG0921|consen 897 LSGTQRKFAGNKFSD 911 (1282)
T ss_pred cccchhhcccccccc
Confidence 445555555444443
No 148
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.48 E-value=1.8e-07 Score=80.84 Aligned_cols=74 Identities=24% Similarity=0.435 Sum_probs=67.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccCC
Q 011693 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 355 (479)
..|||++||+.+.+.+|..||..||.|.+|.+.. ||+||+|.+..+|..|+..||+..|.+-.+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4799999999999999999999999999998854 79999999999999999999999999988999998765
Q ss_pred Cc
Q 011693 356 AD 357 (479)
Q Consensus 356 ~~ 357 (479)
..
T Consensus 74 ~~ 75 (216)
T KOG0106|consen 74 RR 75 (216)
T ss_pred cc
Confidence 43
No 149
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.48 E-value=7.5e-08 Score=81.25 Aligned_cols=77 Identities=21% Similarity=0.342 Sum_probs=71.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEecc
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (479)
..+|||.||...++++.|.++|-+.|.|..|.|+.+++... + ||||.|.+.-...-|++.+|+..+.++.|.|++-.
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~-k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQ-K-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCC-c-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 47999999999999999999999999999999999998887 4 99999999999999999999999999988887753
No 150
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.41 E-value=1.5e-06 Score=62.00 Aligned_cols=70 Identities=24% Similarity=0.413 Sum_probs=48.8
Q ss_pred cEEEEcCCCCCCCHHH----HHHHHhhcC-CeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEE
Q 011693 276 KAVYVKNLPRNVTQDQ----LKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~----l~~~F~~~G-~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 350 (479)
..|+|.|||.+.+... |++++..|| .|.+|. .+.|+|.|.+.+.|.+|.+.|+|..+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 5799999999988755 567777785 466652 3689999999999999999999999999999999
Q ss_pred eccCC
Q 011693 351 LAKPQ 355 (479)
Q Consensus 351 ~a~~~ 355 (479)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 98443
No 151
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.38 E-value=6.6e-07 Score=88.12 Aligned_cols=86 Identities=24% Similarity=0.365 Sum_probs=76.5
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCC---CCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEE
Q 011693 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAK---PGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQAL 347 (479)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l 347 (479)
..+.++.|||+||++.++++.|...|..||.|..|+|+..+ ...+.+-|+||.|.+..+|++|++.|++..+....+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 35567999999999999999999999999999999999765 344456799999999999999999999999999999
Q ss_pred EEEeccCCC
Q 011693 348 ECSLAKPQA 356 (479)
Q Consensus 348 ~v~~a~~~~ 356 (479)
++-|+++-.
T Consensus 250 K~gWgk~V~ 258 (877)
T KOG0151|consen 250 KLGWGKAVP 258 (877)
T ss_pred eeccccccc
Confidence 999986544
No 152
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.37 E-value=6.4e-08 Score=89.33 Aligned_cols=155 Identities=18% Similarity=0.330 Sum_probs=120.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCc-cCCeEEEEeeccc
Q 011693 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE-FKGKKIRCSTSQA 180 (479)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~-~~g~~i~v~~~~~ 180 (479)
..+||+||.+.++..+|..+|...-.-.+-.++. -.||+||...+..-|.+|++.+++.. +.|+++.|..+.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4689999999999999999997653222222222 25899999999999999999999874 7898888865543
Q ss_pred ccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCeee
Q 011693 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVS 260 (479)
Q Consensus 181 ~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 260 (479)
+.
T Consensus 76 kk------------------------------------------------------------------------------ 77 (584)
T KOG2193|consen 76 KK------------------------------------------------------------------------------ 77 (584)
T ss_pred HH------------------------------------------------------------------------------
Confidence 21
Q ss_pred eCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCc
Q 011693 261 WADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340 (479)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~ 340 (479)
..++.+-|+|+|...-|+.|..+...||.|..|..+..... .-..=|+|.+.+.++.||..|++.
T Consensus 78 ------------qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e---tavvnvty~~~~~~~~ai~kl~g~ 142 (584)
T KOG2193|consen 78 ------------QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE---TAVVNVTYSAQQQHRQAIHKLNGP 142 (584)
T ss_pred ------------HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH---HHHHHHHHHHHHHHHHHHHhhcch
Confidence 11267889999999999999999999999998876543211 112347888999999999999999
Q ss_pred eecCeEEEEEeccCC
Q 011693 341 ELDGQALECSLAKPQ 355 (479)
Q Consensus 341 ~~~g~~l~v~~a~~~ 355 (479)
.+....++|.|-...
T Consensus 143 Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 143 QLENQHLKVGYIPDE 157 (584)
T ss_pred HhhhhhhhcccCchh
Confidence 999999999886443
No 153
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.31 E-value=6.9e-07 Score=81.65 Aligned_cols=83 Identities=24% Similarity=0.453 Sum_probs=76.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCee--------EEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCe
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVT--------EVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGK 171 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~ 171 (479)
...+|||.+||..+++.+|.++|.++|.|. .|+|.++++|++.|+-|.|.|.+...|+.|+..+++..+.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 457899999999999999999999999885 478889999999999999999999999999999999999999
Q ss_pred EEEEeeccccc
Q 011693 172 KIRCSTSQAKY 182 (479)
Q Consensus 172 ~i~v~~~~~~~ 182 (479)
+|+|..+....
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99998876543
No 154
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.26 E-value=1.7e-06 Score=85.30 Aligned_cols=82 Identities=20% Similarity=0.345 Sum_probs=73.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC---CCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEE
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGK---DSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~---~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~ 174 (479)
++..+.|||+||++.++++.|...|..||+|.+|+|+-.+ +..+.+-|+||.|-+..+|.+|++.|++..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 5667899999999999999999999999999999998543 3356778999999999999999999999999999999
Q ss_pred Eeecc
Q 011693 175 CSTSQ 179 (479)
Q Consensus 175 v~~~~ 179 (479)
+-|..
T Consensus 251 ~gWgk 255 (877)
T KOG0151|consen 251 LGWGK 255 (877)
T ss_pred ecccc
Confidence 98874
No 155
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.16 E-value=4.2e-06 Score=64.90 Aligned_cols=71 Identities=18% Similarity=0.361 Sum_probs=45.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCC-----ceecCeEEEEE
Q 011693 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK-----YELDGQALECS 350 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~-----~~~~g~~l~v~ 350 (479)
..|+|.+++..++.++|+++|+.||.|..|.+.+.. -.|||.|.+.+.|+.|+..+.- ..|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 579999999999999999999999999999998764 4899999999999999987653 35566666665
Q ss_pred ec
Q 011693 351 LA 352 (479)
Q Consensus 351 ~a 352 (479)
+-
T Consensus 76 vL 77 (105)
T PF08777_consen 76 VL 77 (105)
T ss_dssp --
T ss_pred EC
Confidence 43
No 156
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.12 E-value=2.4e-05 Score=79.85 Aligned_cols=11 Identities=36% Similarity=0.724 Sum_probs=5.2
Q ss_pred CCCCCCCCCCC
Q 011693 467 HGDGGHGQRYR 477 (479)
Q Consensus 467 ~~~g~~g~r~~ 477 (479)
.+.|++|++|.
T Consensus 1270 fg~G~~Gg~~~ 1280 (1282)
T KOG0921|consen 1270 FGGGGRGGNAS 1280 (1282)
T ss_pred CCCCCcccccc
Confidence 34444455554
No 157
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.07 E-value=7.2e-06 Score=63.59 Aligned_cols=69 Identities=28% Similarity=0.487 Sum_probs=43.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCC-----ccCCeEEEEe
Q 011693 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNT-----EFKGKKIRCS 176 (479)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~-----~~~g~~i~v~ 176 (479)
+.|+|.+++..++.++|+++|+.||.|..|.+... ...|||.|.+++.|++|++.+... .|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 57999999999999999999999999999998764 236999999999999999876543 4455544443
No 158
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.90 E-value=2.8e-05 Score=70.13 Aligned_cols=88 Identities=18% Similarity=0.423 Sum_probs=66.0
Q ss_pred CceEEEcCCCCCCCHHH----H--HHHHHhcCCeeEEEEeeCCCCCC-Ccc--eEEEEeCCHHHHHHHHHHhCCCccCCe
Q 011693 101 GSEVYIGGIPHDASEHD----L--RDFCQSIGEVTEVRIMKGKDSSE-NKG--FAFVTFRNVELASKAIDKLNNTEFKGK 171 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~----l--~~~f~~~G~v~~v~i~~~~~~g~-~~g--~afV~F~~~~~A~~a~~~~~~~~~~g~ 171 (479)
..-|||-+||+.+..++ | .++|.+||.|..|.|-+...+-. ..+ =.||+|.+.++|.+||...++..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 45689999999977666 2 37999999998887765321111 111 249999999999999999999999999
Q ss_pred EEEEeecccc-cccccCC
Q 011693 172 KIRCSTSQAK-YRLFIGN 188 (479)
Q Consensus 172 ~i~v~~~~~~-~~l~v~~ 188 (479)
.|+..+-..+ ++.|++|
T Consensus 194 ~lkatYGTTKYCtsYLRn 211 (480)
T COG5175 194 VLKATYGTTKYCTSYLRN 211 (480)
T ss_pred eEeeecCchHHHHHHHcC
Confidence 9999887654 2334444
No 159
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.82 E-value=0.00094 Score=62.75 Aligned_cols=93 Identities=17% Similarity=0.253 Sum_probs=72.6
Q ss_pred CCCcccCCCCCeeeeCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCC---CCCC---Cc----
Q 011693 247 NPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPA---KPGQ---EK---- 316 (479)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~---~~---- 316 (479)
...+.+..-.-.|....|-........++++|.+-|||.+-.-+.|.++|..+|.|+.|+|... +... .+
T Consensus 203 S~kL~vseDgkKVrRisPlp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~ 282 (484)
T KOG1855|consen 203 SSKLEVSEDGKKVRRISPLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFE 282 (484)
T ss_pred cceEEEccCCceeeecCCCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchh
Confidence 3445555555666666666666566667899999999999999999999999999999999876 2211 11
Q ss_pred ---ccEEEEEeCChHHHHHHHHHhCC
Q 011693 317 ---NRIGFVHFAERSSAMKALKNTEK 339 (479)
Q Consensus 317 ---~G~afV~F~~~~~A~~A~~~l~~ 339 (479)
+-+|||+|...+.|.+|.+.|+.
T Consensus 283 ~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 283 LQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 34799999999999999998764
No 160
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=97.82 E-value=0.00015 Score=65.80 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=9.3
Q ss_pred cccCCCCCCCCHHHHHHHH
Q 011693 184 LFIGNIPRNWGSEDLQKVV 202 (479)
Q Consensus 184 l~v~~l~~~~~~~~l~~~f 202 (479)
|-+...|.++++-.|.+..
T Consensus 152 L~~~k~p~Nin~~~lfe~i 170 (465)
T KOG3973|consen 152 LNFPKQPGNINEWKLFETI 170 (465)
T ss_pred cCCCCCCCCchHHHHHHHH
Confidence 3444455556555444433
No 161
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.80 E-value=0.00012 Score=66.30 Aligned_cols=80 Identities=20% Similarity=0.456 Sum_probs=64.7
Q ss_pred cEEEEcCCCCCCCHHHH------HHHHhhcCCeEEEEecCCCC-CCCcccEE--EEEeCChHHHHHHHHHhCCceecCeE
Q 011693 276 KAVYVKNLPRNVTQDQL------KKLFEHHGRITKVVVPPAKP-GQEKNRIG--FVHFAERSSAMKALKNTEKYELDGQA 346 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l------~~~F~~~G~v~~v~i~~~~~-~~~~~G~a--fV~F~~~~~A~~A~~~l~~~~~~g~~ 346 (479)
+-+||-+||+.+-.+++ .++|.+||.|..|.|-+... ..+..+.+ ||+|.+.++|.+||...++..++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 67999999988876652 58999999999998876541 11112323 99999999999999999999999999
Q ss_pred EEEEeccCC
Q 011693 347 LECSLAKPQ 355 (479)
Q Consensus 347 l~v~~a~~~ 355 (479)
|+..|...+
T Consensus 195 lkatYGTTK 203 (480)
T COG5175 195 LKATYGTTK 203 (480)
T ss_pred EeeecCchH
Confidence 999997643
No 162
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.72 E-value=1.9e-05 Score=73.03 Aligned_cols=79 Identities=24% Similarity=0.525 Sum_probs=72.4
Q ss_pred ceEE-EcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 011693 102 SEVY-IGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (479)
Q Consensus 102 ~~l~-V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 180 (479)
.++| |.+|++.+++++|+.+|..+|.|+.+++..++.++.++|||||.|.+...+..++.. ....+.++.+.+....+
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEP 263 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCC
Confidence 3455 999999999999999999999999999999999999999999999999999999976 88889999999987765
Q ss_pred c
Q 011693 181 K 181 (479)
Q Consensus 181 ~ 181 (479)
.
T Consensus 264 ~ 264 (285)
T KOG4210|consen 264 R 264 (285)
T ss_pred C
Confidence 4
No 163
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.72 E-value=3.2e-05 Score=70.07 Aligned_cols=77 Identities=16% Similarity=0.356 Sum_probs=69.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcC--CeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeec
Q 011693 102 SEVYIGGIPHDASEHDLRDFCQSIG--EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (479)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 178 (479)
-.+||+||-|.+|.++|.+.+...| .+.+++++.++.+|.+||||.|...+..++++.++.|-.+.|+|..-.|..+
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 3589999999999999999998877 5788999999999999999999999999999999999999999987766544
No 164
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.00017 Score=69.83 Aligned_cols=76 Identities=26% Similarity=0.345 Sum_probs=64.6
Q ss_pred cEEEEcCCCCCCC------HHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceec-CeEEE
Q 011693 276 KAVYVKNLPRNVT------QDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD-GQALE 348 (479)
Q Consensus 276 ~~l~V~nLp~~~t------~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~-g~~l~ 348 (479)
.+|+|.|+|---. ...|..+|+++|.|+.+.++.+..++. +||.|++|.+..+|+.|++.|||+.|+ .+++.
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggt-kG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGT-KGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCe-eeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 7999999985322 345678999999999999999999985 999999999999999999999999987 56666
Q ss_pred EEec
Q 011693 349 CSLA 352 (479)
Q Consensus 349 v~~a 352 (479)
|..-
T Consensus 138 v~~f 141 (698)
T KOG2314|consen 138 VRLF 141 (698)
T ss_pred eehh
Confidence 6543
No 165
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.60 E-value=0.00017 Score=48.16 Aligned_cols=52 Identities=19% Similarity=0.478 Sum_probs=43.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHH
Q 011693 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160 (479)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~ 160 (479)
+.|-|.+.+.+..+. |..+|..||+|+.+.+-. ...+.||+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 678999999887755 555899999999988762 3558999999999999986
No 166
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.56 E-value=0.00022 Score=62.43 Aligned_cols=92 Identities=17% Similarity=0.266 Sum_probs=81.2
Q ss_pred HHHHHHHHhCCCccCCeEEEEeecccccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCC
Q 011693 155 LASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHN 234 (479)
Q Consensus 155 ~A~~a~~~~~~~~~~g~~i~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~ 234 (479)
-|..|...|++....++.++|.++.. ..|+|.||+.-++.+.+...|+.||+ |....++.| ..+++.+-++|.|..
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~-a~l~V~nl~~~~sndll~~~f~~fg~-~e~av~~vD--~r~k~t~eg~v~~~~ 81 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH-AELYVVNLMQGASNDLLEQAFRRFGP-IERAVAKVD--DRGKPTREGIVEFAK 81 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc-ceEEEEecchhhhhHHHHHhhhhcCc-cchheeeec--ccccccccchhhhhc
Confidence 35566667899999999999999998 99999999999999999999999999 888888877 678888899999999
Q ss_pred HhHHHHHHHhccCCCc
Q 011693 235 HKCAEYSRQKMTNPNF 250 (479)
Q Consensus 235 ~~~a~~a~~~~~~~~~ 250 (479)
...+..|+.......+
T Consensus 82 k~~a~~a~rr~~~~g~ 97 (275)
T KOG0115|consen 82 KPNARKAARRCREGGF 97 (275)
T ss_pred chhHHHHHHHhccCcc
Confidence 9999999888765444
No 167
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.52 E-value=0.00029 Score=46.99 Aligned_cols=52 Identities=23% Similarity=0.464 Sum_probs=42.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHH
Q 011693 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~ 334 (479)
+.|.|.+.+.+..+ .|..+|..||.|..+.+... .-+.+|+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 56888898877664 45568999999999999732 358999999999999985
No 168
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.50 E-value=7e-05 Score=65.36 Aligned_cols=71 Identities=18% Similarity=0.411 Sum_probs=61.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCC--------CCccc----EEEEEeCChHHHHHHHHHhCCceec
Q 011693 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG--------QEKNR----IGFVHFAERSSAMKALKNTEKYELD 343 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~--------~~~~G----~afV~F~~~~~A~~A~~~l~~~~~~ 343 (479)
..||+++||+......|+++|+.||.|-+|.|-+.... +.++. -|+|+|.+...|.++...||+..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 68999999999999999999999999999999887644 11122 3789999999999999999999999
Q ss_pred CeE
Q 011693 344 GQA 346 (479)
Q Consensus 344 g~~ 346 (479)
|++
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 875
No 169
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.00044 Score=66.60 Aligned_cols=63 Identities=29% Similarity=0.352 Sum_probs=59.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHH-hcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHH
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQ-SIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~ 162 (479)
..+||||++||.-+|.++|..+|. -||-|..|-|-+|++-+..+|-|=|+|.+..+-.+||.+
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 468999999999999999999998 799999999999988899999999999999999999964
No 170
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.35 E-value=0.0013 Score=63.93 Aligned_cols=76 Identities=21% Similarity=0.332 Sum_probs=62.3
Q ss_pred CCceEEEcCCCCC--CCH----HHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccC-CeE
Q 011693 100 HGSEVYIGGIPHD--ASE----HDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK-GKK 172 (479)
Q Consensus 100 ~~~~l~V~nLp~~--~t~----~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~-g~~ 172 (479)
-...|+|-|+|-- ... .-|..+|+++|+|+.+.+..+..+| ++||.|++|.+..+|+.|++.|||..|. ..+
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 4578999999864 222 2356789999999999999887755 9999999999999999999999999886 455
Q ss_pred EEEe
Q 011693 173 IRCS 176 (479)
Q Consensus 173 i~v~ 176 (479)
+.|.
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 5554
No 171
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.34 E-value=0.0013 Score=50.14 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=52.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEE-ecCCCC------CCCcccEEEEEeCChHHHHHHHHHhCCceecCe-EE
Q 011693 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVV-VPPAKP------GQEKNRIGFVHFAERSSAMKALKNTEKYELDGQ-AL 347 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~-i~~~~~------~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~-~l 347 (479)
+-|.|-+.|.. ....|.++|++||.|.+.. +.++.. ......+-.|+|.++.+|.+||.. ||..|.|. .+
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~mv 84 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLMV 84 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEEE
Confidence 67889999888 5667889999999998875 111100 011135899999999999999994 99999885 55
Q ss_pred EEEeccC
Q 011693 348 ECSLAKP 354 (479)
Q Consensus 348 ~v~~a~~ 354 (479)
-|.++++
T Consensus 85 GV~~~~~ 91 (100)
T PF05172_consen 85 GVKPCDP 91 (100)
T ss_dssp EEEE-HH
T ss_pred EEEEcHH
Confidence 6777643
No 172
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.28 E-value=0.00025 Score=66.51 Aligned_cols=67 Identities=27% Similarity=0.380 Sum_probs=56.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeC---CCCC--CC--------cceEEEEeCCHHHHHHHHHHhCCC
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKG---KDSS--EN--------KGFAFVTFRNVELASKAIDKLNNT 166 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~---~~~g--~~--------~g~afV~F~~~~~A~~a~~~~~~~ 166 (479)
.+++|.+-|||.+-..+.|.++|..+|.|..|+|+.. +.+. .. +-+|+|+|...+.|.+|.+.++..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 5789999999999888999999999999999999986 3332 22 346999999999999999876544
No 173
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.27 E-value=0.0015 Score=52.93 Aligned_cols=75 Identities=21% Similarity=0.316 Sum_probs=52.8
Q ss_pred CCCCceEEEcCCCCC-----CCH----HHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCcc
Q 011693 98 PPHGSEVYIGGIPHD-----ASE----HDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF 168 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~-----~t~----~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~ 168 (479)
-|...||.|.=+.+. .-. .+|.+.|..||.|.-|+++-+ .-+|+|.+-.+|.+|+ .+++..+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~v 94 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQV 94 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcEE
Confidence 445567766655411 222 357788899999998888765 4899999999999999 6999999
Q ss_pred CCeEEEEeecccc
Q 011693 169 KGKKIRCSTSQAK 181 (479)
Q Consensus 169 ~g~~i~v~~~~~~ 181 (479)
.|+.|+|+.-.+.
T Consensus 95 ~g~~l~i~LKtpd 107 (146)
T PF08952_consen 95 NGRTLKIRLKTPD 107 (146)
T ss_dssp TTEEEEEEE----
T ss_pred CCEEEEEEeCCcc
Confidence 9999999876543
No 174
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.25 E-value=0.0017 Score=52.61 Aligned_cols=58 Identities=26% Similarity=0.406 Sum_probs=47.0
Q ss_pred HHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccCCC
Q 011693 290 DQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA 356 (479)
Q Consensus 290 ~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 356 (479)
.+|.+.|..||.|.=|+++.+ .-+|+|.+.+.|.+|+. +++..|+|+.|+|++..|.=
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPDW 108 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE-----
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCccH
Confidence 367888999999999988764 57999999999999998 79999999999999987754
No 175
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.24 E-value=0.00052 Score=66.98 Aligned_cols=76 Identities=20% Similarity=0.288 Sum_probs=63.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHH-hcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCcc---CCeEEEE
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQ-SIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF---KGKKIRC 175 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~---~g~~i~v 175 (479)
.+..|+|.||-.-.|.-+|+.++. ..|.|++. ++|+ -+..|||.|.+.++|.....+||+..| +.+.|.|
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHH--HHHH----hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 467899999999999999999998 56677777 3443 366799999999999999999999987 5788988
Q ss_pred eecccc
Q 011693 176 STSQAK 181 (479)
Q Consensus 176 ~~~~~~ 181 (479)
.+....
T Consensus 517 df~~~d 522 (718)
T KOG2416|consen 517 DFVRAD 522 (718)
T ss_pred eecchh
Confidence 887654
No 176
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.12 E-value=0.0013 Score=57.73 Aligned_cols=102 Identities=24% Similarity=0.348 Sum_probs=78.5
Q ss_pred hHHHHHHHhccCCCcccCCCCCeeeeCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCC
Q 011693 236 KCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315 (479)
Q Consensus 236 ~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~ 315 (479)
..|..|...|.+. ...++.+.|.++.. ..|+|.||..-++.+.|.+.|+.||.|....+..|.....
T Consensus 5 t~ae~ak~eLd~~--~~~~~~lr~rfa~~-----------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~ 71 (275)
T KOG0115|consen 5 TLAEIAKRELDGR--FPKGRSLRVRFAMH-----------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKP 71 (275)
T ss_pred cHHHHHHHhcCCC--CCCCCceEEEeecc-----------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccc
Confidence 3455666666654 45677788877654 5899999999999999999999999999888887776655
Q ss_pred cccEEEEEeCChHHHHHHHHHhCCc----eecCeEEEEEe
Q 011693 316 KNRIGFVHFAERSSAMKALKNTEKY----ELDGQALECSL 351 (479)
Q Consensus 316 ~~G~afV~F~~~~~A~~A~~~l~~~----~~~g~~l~v~~ 351 (479)
.+-++|.|...-.|.+|+..++.. +..+++.-|..
T Consensus 72 -t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 72 -TREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred -cccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 578999999999999999987532 33445555543
No 177
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.09 E-value=0.00026 Score=62.10 Aligned_cols=67 Identities=16% Similarity=0.167 Sum_probs=54.0
Q ss_pred HHHHHHHh-hcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccCCCc
Q 011693 290 DQLKKLFE-HHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQAD 357 (479)
Q Consensus 290 ~~l~~~F~-~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 357 (479)
++|...|+ +||.|+.+.|-.+-.-.. +|-++|.|...++|++|+..||+..|.|++|.+.+..-...
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl-~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~ 150 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHL-VGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDF 150 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhh-hhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCch
Confidence 44555555 899999987765543333 78999999999999999999999999999999998865443
No 178
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.08 E-value=0.0016 Score=58.05 Aligned_cols=78 Identities=22% Similarity=0.333 Sum_probs=58.9
Q ss_pred cEEEEcCCC--CCCC---HHHHHHHHhhcCCeEEEEecCCCCCCCcc-cEEEEEeCChHHHHHHHHHhCCceecCeEEEE
Q 011693 276 KAVYVKNLP--RNVT---QDQLKKLFEHHGRITKVVVPPAKPGQEKN-RIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (479)
Q Consensus 276 ~~l~V~nLp--~~~t---~~~l~~~F~~~G~v~~v~i~~~~~~~~~~-G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 349 (479)
+.|.++|+- -.++ +++++.-+++||.|..|.|+......... ---||+|...++|.+|+-.|||+.|+||.+..
T Consensus 282 kvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A 361 (378)
T KOG1996|consen 282 KVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSA 361 (378)
T ss_pred HHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeh
Confidence 345556652 2333 45789999999999999988775322211 24799999999999999999999999999887
Q ss_pred Eecc
Q 011693 350 SLAK 353 (479)
Q Consensus 350 ~~a~ 353 (479)
.|-.
T Consensus 362 ~Fyn 365 (378)
T KOG1996|consen 362 CFYN 365 (378)
T ss_pred eecc
Confidence 6654
No 179
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.03 E-value=0.0032 Score=48.01 Aligned_cols=77 Identities=18% Similarity=0.238 Sum_probs=52.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-------CCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEE
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGK-------DSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~-------~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i 173 (479)
.+.|.|=+.|.. ....|.++|++||.|++..-+... ..-.......|+|.++.+|.+|| ..||..|.|..|
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcEE
Confidence 567999999998 555688899999999887511000 00123558999999999999999 689999988654
Q ss_pred -EEeecc
Q 011693 174 -RCSTSQ 179 (479)
Q Consensus 174 -~v~~~~ 179 (479)
-|.++.
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 466653
No 180
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.02 E-value=0.001 Score=65.06 Aligned_cols=85 Identities=18% Similarity=0.240 Sum_probs=68.5
Q ss_pred CCCccccEEEEcCCCCCCCHHHHHHHHhh-cCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCcee---cCe
Q 011693 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEH-HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL---DGQ 345 (479)
Q Consensus 270 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~---~g~ 345 (479)
+....++.|+|.||-.-.|.-+|+.++.. +|.|+...| |+ .+-.|||.|.+.++|...+.+|||..+ +.+
T Consensus 439 sR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK 512 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPK 512 (718)
T ss_pred CCCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH----hhcceeEecccHHHHHHHHHHHhccccCCCCCc
Confidence 45566799999999999999999999984 666776633 33 245799999999999999999999877 468
Q ss_pred EEEEEeccCCCccCC
Q 011693 346 ALECSLAKPQADQKS 360 (479)
Q Consensus 346 ~l~v~~a~~~~~~~~ 360 (479)
.|.+.|........+
T Consensus 513 ~L~adf~~~deld~h 527 (718)
T KOG2416|consen 513 HLIADFVRADELDKH 527 (718)
T ss_pred eeEeeecchhHHHHH
Confidence 899999876655443
No 181
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.02 E-value=0.0011 Score=61.37 Aligned_cols=76 Identities=22% Similarity=0.311 Sum_probs=63.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCC---cccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEec
Q 011693 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE---KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~---~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
..|.|.||.+++|.++++.+|...|.|..++|+....... ..-.|||.|.+...+..|.. |.++.|-++.|.|-..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 5899999999999999999999999999999998553322 23489999999999998876 7777777887777654
No 182
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.73 E-value=0.0052 Score=54.91 Aligned_cols=65 Identities=29% Similarity=0.417 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcCCeeEEEEeeCCCCCCC-cceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 011693 115 EHDLRDFCQSIGEVTEVRIMKGKDSSEN-KGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (479)
Q Consensus 115 ~~~l~~~f~~~G~v~~v~i~~~~~~g~~-~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 179 (479)
++++++-+++||.|..|.|...+..-.. .---||+|...++|.+|+-.|||..|.||.++..+..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 4668889999999999999877532111 2238999999999999999999999999999876543
No 183
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.0066 Score=59.47 Aligned_cols=80 Identities=18% Similarity=0.244 Sum_probs=62.1
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHHHhc----CCeeEEEEeeCCC----------CCC---------------------
Q 011693 98 PPHGSEVYIGGIPHD-ASEHDLRDFCQSI----GEVTEVRIMKGKD----------SSE--------------------- 141 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~-~t~~~l~~~f~~~----G~v~~v~i~~~~~----------~g~--------------------- 141 (479)
....++|-|-|+.|+ +...+|..+|+.| |.|.+|.|+.... .|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 335789999999999 8999999999987 6899999875321 111
Q ss_pred ----------------CcceEEEEeCCHHHHHHHHHHhCCCccCC--eEEEEee
Q 011693 142 ----------------NKGFAFVTFRNVELASKAIDKLNNTEFKG--KKIRCST 177 (479)
Q Consensus 142 ----------------~~g~afV~F~~~~~A~~a~~~~~~~~~~g--~~i~v~~ 177 (479)
---||.|+|.+.+.|....+.++|..+.. ..|.+++
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 12379999999999999999999999864 4454444
No 184
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.65 E-value=0.0011 Score=58.34 Aligned_cols=63 Identities=27% Similarity=0.405 Sum_probs=51.7
Q ss_pred HHHHHHHH-hcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 011693 116 HDLRDFCQ-SIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (479)
Q Consensus 116 ~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 179 (479)
++|...|. +||+|+.++|+.+.. -...|-+||.|...++|.+|++.||+..+.|++|...++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34444444 899999998887643 3567889999999999999999999999999999887553
No 185
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.53 E-value=0.016 Score=41.86 Aligned_cols=55 Identities=20% Similarity=0.324 Sum_probs=43.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCC
Q 011693 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~ 339 (479)
...+|. .|..+-..+|.++|+.||.| .|..+.+. -|||...+.+.|..|+..+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 677777 99999999999999999996 56666653 899999999999999998763
No 186
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.36 E-value=0.022 Score=38.93 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=45.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhc---CCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHh
Q 011693 276 KAVYVKNLPRNVTQDQLKKLFEHH---GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l~~~F~~~---G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l 337 (479)
..|+|+++ .+.+.++|+.+|..| .....|..+.|. -|=|.|.+.+.|.+||.+|
T Consensus 6 eavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 68999998 458889999999999 235678888775 6889999999999999865
No 187
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.19 E-value=0.033 Score=38.09 Aligned_cols=55 Identities=20% Similarity=0.315 Sum_probs=44.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhc---CCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHh
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSI---GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~---G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~ 163 (479)
...|+|+++. +++.++|+.+|..| .....|..+-|. .|=|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3579999984 48888999999999 134577777664 3899999999999999654
No 188
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.05 E-value=0.037 Score=44.22 Aligned_cols=73 Identities=21% Similarity=0.322 Sum_probs=56.8
Q ss_pred ccccEEEEcCCCCCC----CHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEE
Q 011693 273 SQVKAVYVKNLPRNV----TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~----t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~ 348 (479)
++..+|.|+=|..++ +-..+...++.||.|.+|.+.- +--|.|.|.+..+|-+|+.+++. ...|..+.
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~q 155 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQ 155 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceEE
Confidence 344788887766655 3344556678899999998854 34899999999999999999887 67789999
Q ss_pred EEecc
Q 011693 349 CSLAK 353 (479)
Q Consensus 349 v~~a~ 353 (479)
|+|-.
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 98864
No 189
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.86 E-value=0.024 Score=48.68 Aligned_cols=79 Identities=9% Similarity=0.059 Sum_probs=51.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhh-cCCe---EEEE--ecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecC-----
Q 011693 276 KAVYVKNLPRNVTQDQLKKLFEH-HGRI---TKVV--VPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG----- 344 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l~~~F~~-~G~v---~~v~--i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g----- 344 (479)
.+|.|++||+++|++++.+.+.. ++.. ..+. +..........--|||.|.+.+++..-+..++|+.|.+
T Consensus 8 ~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~ 87 (176)
T PF03467_consen 8 TKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGNE 87 (176)
T ss_dssp -EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-E
T ss_pred ceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCCC
Confidence 69999999999999999997776 5554 2333 22222222222369999999999999999999987753
Q ss_pred eEEEEEeccC
Q 011693 345 QALECSLAKP 354 (479)
Q Consensus 345 ~~l~v~~a~~ 354 (479)
.+..|.+|--
T Consensus 88 ~~~~VE~Apy 97 (176)
T PF03467_consen 88 YPAVVEFAPY 97 (176)
T ss_dssp EEEEEEE-SS
T ss_pred cceeEEEcch
Confidence 3557777744
No 190
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.82 E-value=0.04 Score=39.80 Aligned_cols=56 Identities=16% Similarity=0.302 Sum_probs=40.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCC
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNN 165 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~ 165 (479)
....+|. .|......||.++|+.||.|.= ..+-| ..|||...+.+.|..|+..+..
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~V-sWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYV-SWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEE-EEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEE-EEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 3445555 9999999999999999998854 44433 2599999999999999987753
No 191
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=95.64 E-value=0.076 Score=54.25 Aligned_cols=19 Identities=11% Similarity=0.300 Sum_probs=10.5
Q ss_pred EeCCHHHHHHHHHHhCCCc
Q 011693 149 TFRNVELASKAIDKLNNTE 167 (479)
Q Consensus 149 ~F~~~~~A~~a~~~~~~~~ 167 (479)
.-++..++.+|++++=+..
T Consensus 205 ~~k~~~eiIrClka~mNn~ 223 (1102)
T KOG1924|consen 205 DIKNLQEIIRCLKAFMNNK 223 (1102)
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 3344566677776554433
No 192
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.52 E-value=0.49 Score=45.73 Aligned_cols=28 Identities=14% Similarity=0.395 Sum_probs=16.0
Q ss_pred HHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHH
Q 011693 197 DLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAE 239 (479)
Q Consensus 197 ~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 239 (479)
-|-.+|.-||+ |. ..|-.|.|.+.+.+.
T Consensus 246 ~lG~I~EiFGp-V~--------------~P~YvvRFnS~~e~~ 273 (483)
T KOG2236|consen 246 ALGQIFEIFGP-VK--------------NPYYVVRFNSEEEIS 273 (483)
T ss_pred cchhhhhhhcc-cC--------------CceEEEecCchhhhh
Confidence 35566777776 32 345556676665544
No 193
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.42 E-value=0.0037 Score=57.43 Aligned_cols=81 Identities=21% Similarity=0.395 Sum_probs=63.3
Q ss_pred CceEEEcCCCCCCCHHHHH---HHHHhcCCeeEEEEeeCCCC-CC--CcceEEEEeCCHHHHHHHHHHhCCCccCCeEEE
Q 011693 101 GSEVYIGGIPHDASEHDLR---DFCQSIGEVTEVRIMKGKDS-SE--NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~---~~f~~~G~v~~v~i~~~~~~-g~--~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~ 174 (479)
...+||-+|+..+..+.+. ++|.+||.|..|.+..++.. .. .---+||+|...++|..||...++..+.|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 4568899999886555544 58999999999998887621 11 111389999999999999999999999999988
Q ss_pred Eeecccc
Q 011693 175 CSTSQAK 181 (479)
Q Consensus 175 v~~~~~~ 181 (479)
+.+...+
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 8776654
No 194
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.37 E-value=0.1 Score=41.78 Aligned_cols=74 Identities=19% Similarity=0.307 Sum_probs=54.9
Q ss_pred CCCCceEEEcCCCCCC----CHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEE
Q 011693 98 PPHGSEVYIGGIPHDA----SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~----t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i 173 (479)
.+.-.||.|+=|..++ +...+...++.||+|.+|.++- +-.|.|.|++..+|-+|+.+++. ..-|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 3445678887665553 3344556778999999998864 44699999999999999977655 6677788
Q ss_pred EEeecc
Q 011693 174 RCSTSQ 179 (479)
Q Consensus 174 ~v~~~~ 179 (479)
.+.+-.
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 777654
No 195
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.37 E-value=0.013 Score=55.23 Aligned_cols=78 Identities=22% Similarity=0.291 Sum_probs=61.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCc-eecCeEEEEEeccC
Q 011693 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY-ELDGQALECSLAKP 354 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~-~~~g~~l~v~~a~~ 354 (479)
+.||++||...++..+|..+|...-.-.+-.++.. .||+||.+.+..-|.+|++.+++. .+.|+++.|..+-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 57999999999999999999977522111122221 489999999999999999999875 57899999998877
Q ss_pred CCccC
Q 011693 355 QADQK 359 (479)
Q Consensus 355 ~~~~~ 359 (479)
+..+.
T Consensus 76 kkqrs 80 (584)
T KOG2193|consen 76 KKQRS 80 (584)
T ss_pred HHHHh
Confidence 76543
No 196
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.34 E-value=0.76 Score=45.38 Aligned_cols=69 Identities=14% Similarity=0.282 Sum_probs=56.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhh--cCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhC--CceecCeEEEEEe
Q 011693 276 KAVYVKNLPRNVTQDQLKKLFEH--HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE--KYELDGQALECSL 351 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l~~~F~~--~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~--~~~~~g~~l~v~~ 351 (479)
++|.|+-||.++-.++|+.+|.. |-.+++|.+-.+. --||+|++..||+.|.+.|. -..|.|++|...+
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 78889999999999999999976 6778888886653 46999999999999998876 3467787775544
No 197
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.33 E-value=0.0066 Score=62.57 Aligned_cols=80 Identities=15% Similarity=0.299 Sum_probs=66.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEecc
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (479)
.+.+||++||+..+++.+|+..|..+|.|.+|.|-....+.-+ -|+||.|.+...+-.|+..+.+..|..-.+++.+..
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~es-a~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTES-AYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCccc-chhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 3689999999999999999999999999999998776544332 499999999999999999999888876566665554
Q ss_pred C
Q 011693 354 P 354 (479)
Q Consensus 354 ~ 354 (479)
+
T Consensus 450 ~ 450 (975)
T KOG0112|consen 450 P 450 (975)
T ss_pred c
Confidence 3
No 198
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.31 E-value=0.069 Score=45.98 Aligned_cols=64 Identities=19% Similarity=0.168 Sum_probs=47.7
Q ss_pred CHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhC--CceecCeEEEEEeccCCCc
Q 011693 288 TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE--KYELDGQALECSLAKPQAD 357 (479)
Q Consensus 288 t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~--~~~~~g~~l~v~~a~~~~~ 357 (479)
....|+++|..|+.+..+.+++.- +-..|.|.+.++|.+|...|+ +..|.|..|+|.++.+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~~ 73 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTPI 73 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS-
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccccc
Confidence 457899999999998888777754 568999999999999999999 9999999999999965543
No 199
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.15 E-value=0.1 Score=36.35 Aligned_cols=56 Identities=11% Similarity=0.187 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEE
Q 011693 285 RNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (479)
Q Consensus 285 ~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 349 (479)
..++.++|+..+..|.- .+|..++ .|| ||.|.+..+|+++....++..+....|.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~---~~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW---DRIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCc---ceEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 35788999999999953 4555555 455 79999999999999999998888777654
No 200
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.08 E-value=0.019 Score=49.29 Aligned_cols=71 Identities=20% Similarity=0.294 Sum_probs=45.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHh-cCCe---eEEEEeeCCCC--CCCcceEEEEeCCHHHHHHHHHHhCCCccCC
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQS-IGEV---TEVRIMKGKDS--SENKGFAFVTFRNVELASKAIDKLNNTEFKG 170 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~-~G~v---~~v~i~~~~~~--g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g 170 (479)
...+|.||+||+.+|++++.+.++. ++.. ..+.-...... -....-|||.|.+.+++...+..+++..+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 3578999999999999999987766 5554 33332222111 1123459999999999999999999887643
No 201
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.00 E-value=0.28 Score=38.26 Aligned_cols=68 Identities=10% Similarity=0.065 Sum_probs=53.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcC-CeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecC
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G-~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g 344 (479)
+..+.+-..|+.++.+.|..+.+.+- .|..++|+++... ++=.+++.|.+.++|..-...+||+.|+.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p--nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP--NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC--ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 35566666667777778877777764 4778999987643 34689999999999999999999998875
No 202
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=94.53 E-value=0.024 Score=61.05 Aligned_cols=8 Identities=13% Similarity=0.110 Sum_probs=3.9
Q ss_pred HHHHHHhc
Q 011693 118 LRDFCQSI 125 (479)
Q Consensus 118 l~~~f~~~ 125 (479)
|.++|+..
T Consensus 741 La~~Fk~r 748 (784)
T PF04931_consen 741 LAAIFKER 748 (784)
T ss_pred HHHHHHHH
Confidence 44455543
No 203
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.53 E-value=0.05 Score=53.27 Aligned_cols=70 Identities=19% Similarity=0.286 Sum_probs=57.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHh--cCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCC--CccCCeEEEE
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQS--IGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNN--TEFKGKKIRC 175 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~--~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~--~~~~g~~i~v 175 (479)
..|.|.|+-||..+-.++|+.||+. |-++.+|.+-.+.. =||+|.+..+|+.|.+.|.. +.|.|+.|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 4678899999999999999999975 77899999877642 79999999999999987753 4577777654
Q ss_pred e
Q 011693 176 S 176 (479)
Q Consensus 176 ~ 176 (479)
+
T Consensus 247 R 247 (684)
T KOG2591|consen 247 R 247 (684)
T ss_pred h
Confidence 3
No 204
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.32 E-value=0.31 Score=38.03 Aligned_cols=67 Identities=19% Similarity=0.337 Sum_probs=49.3
Q ss_pred CceEEEcCC-CCCCCHHHHHHHHHhcC-CeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccC
Q 011693 101 GSEVYIGGI-PHDASEHDLRDFCQSIG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK 169 (479)
Q Consensus 101 ~~~l~V~nL-p~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~ 169 (479)
.++|.|--+ |+-++.++|..+...+- .|..++|+++. ..++-.+.++|++.++|......+||+.+.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 344554445 44466666766665553 57788898874 346778999999999999999999999875
No 205
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.24 E-value=0.029 Score=53.85 Aligned_cols=74 Identities=19% Similarity=0.261 Sum_probs=62.0
Q ss_pred cEEEEcCCCCCC-CHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccC
Q 011693 276 KAVYVKNLPRNV-TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (479)
Q Consensus 276 ~~l~V~nLp~~~-t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (479)
+.|-+.-.|+.. |.++|-.+|.+||.|..|.|-... -.|.|+|.+..+|-.|.. .++..|++|.|+|.|-++
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 566666677766 678999999999999999886652 368999999999988876 689999999999999988
Q ss_pred CC
Q 011693 355 QA 356 (479)
Q Consensus 355 ~~ 356 (479)
..
T Consensus 446 s~ 447 (526)
T KOG2135|consen 446 SP 447 (526)
T ss_pred Cc
Confidence 54
No 206
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.96 E-value=0.042 Score=55.05 Aligned_cols=74 Identities=19% Similarity=0.281 Sum_probs=65.4
Q ss_pred CCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEE
Q 011693 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (479)
Q Consensus 270 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 349 (479)
...++..++||+|+...+..+-++.+...||.|.++.... |+|+.|..+.-+..|+..++-..+++..+.+
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 4455568999999999999999999999999998877654 9999999999999999999999999988877
Q ss_pred Eec
Q 011693 350 SLA 352 (479)
Q Consensus 350 ~~a 352 (479)
..-
T Consensus 106 ~~d 108 (668)
T KOG2253|consen 106 NVD 108 (668)
T ss_pred cch
Confidence 664
No 207
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.71 E-value=0.37 Score=34.68 Aligned_cols=59 Identities=15% Similarity=0.217 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHhhcCC-----eEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEec
Q 011693 285 RNVTQDQLKKLFEHHGR-----ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 285 ~~~t~~~l~~~F~~~G~-----v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
..++..+|..++...+. |-.|.|..+ |+||+- ..+.|..++..|++..+.|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev-~~~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEV-PEEVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE--TT-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEE-CHHHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 35678888888877643 667888753 899999 556899999999999999999999875
No 208
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.62 E-value=0.28 Score=46.19 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=44.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHH
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGE-VTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~-v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~ 161 (479)
...|-|.++|.....+||...|..|+. =-.|+.+-|. .||-.|.+...|..||-
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 457899999999999999999999974 3455555443 59999999999999994
No 209
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=93.50 E-value=0.062 Score=58.04 Aligned_cols=14 Identities=14% Similarity=0.306 Sum_probs=10.2
Q ss_pred CCHHHHHHHHHhcC
Q 011693 113 ASEHDLRDFCQSIG 126 (479)
Q Consensus 113 ~t~~~l~~~f~~~G 126 (479)
.|-++|.+++..+-
T Consensus 426 ~s~eel~~lL~~~~ 439 (840)
T PF04147_consen 426 SSHEELLELLDGYS 439 (840)
T ss_pred CCHHHHHHHHhcCC
Confidence 36678888888763
No 210
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=93.41 E-value=0.031 Score=60.25 Aligned_cols=8 Identities=0% Similarity=0.194 Sum_probs=3.2
Q ss_pred CCHHHHHH
Q 011693 113 ASEHDLRD 120 (479)
Q Consensus 113 ~t~~~l~~ 120 (479)
++++++..
T Consensus 729 mdDe~m~~ 736 (784)
T PF04931_consen 729 MDDEQMMA 736 (784)
T ss_pred cCHHHHHH
Confidence 34444443
No 211
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.16 E-value=0.076 Score=51.05 Aligned_cols=76 Identities=17% Similarity=0.188 Sum_probs=62.4
Q ss_pred CCceEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeec
Q 011693 100 HGSEVYIGGIPHD-ASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (479)
Q Consensus 100 ~~~~l~V~nLp~~-~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 178 (479)
+.+.|-|.-.|+. -|..+|..+|.+||.|..|.+-.. .--|.|+|.+..+|-+|. ..++..|++|.|+|.|.
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchh-ccccceecCceeEEEEe
Confidence 3456667777776 467889999999999999987554 234999999999998888 68999999999999998
Q ss_pred cccc
Q 011693 179 QAKY 182 (479)
Q Consensus 179 ~~~~ 182 (479)
.+..
T Consensus 444 nps~ 447 (526)
T KOG2135|consen 444 NPSP 447 (526)
T ss_pred cCCc
Confidence 7754
No 212
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.13 E-value=0.037 Score=51.01 Aligned_cols=80 Identities=23% Similarity=0.449 Sum_probs=62.4
Q ss_pred cEEEEcCCCCCCCHHHH---HHHHhhcCCeEEEEecCCCC--CCCc-ccEEEEEeCChHHHHHHHHHhCCceecCeEEEE
Q 011693 276 KAVYVKNLPRNVTQDQL---KKLFEHHGRITKVVVPPAKP--GQEK-NRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l---~~~F~~~G~v~~v~i~~~~~--~~~~-~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 349 (479)
+-+||-+|+..+..+.+ .+.|.+||.|..|.+..+.. .... ---++|+|...++|..||...++..++|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 56788888877765554 46799999999999988772 1110 113799999999999999999999999998887
Q ss_pred EeccCC
Q 011693 350 SLAKPQ 355 (479)
Q Consensus 350 ~~a~~~ 355 (479)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 777654
No 213
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.85 E-value=0.34 Score=41.77 Aligned_cols=60 Identities=23% Similarity=0.288 Sum_probs=46.1
Q ss_pred CHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhC--CCccCCeEEEEeecc
Q 011693 114 SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN--NTEFKGKKIRCSTSQ 179 (479)
Q Consensus 114 t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~--~~~~~g~~i~v~~~~ 179 (479)
....|+++|..|+.+..+.+.+. -+-..|.|.+.++|.+|...|+ +..+.|..++|.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 45789999999999988887764 4459999999999999999999 899999999998774
No 214
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.77 E-value=0.074 Score=54.80 Aligned_cols=77 Identities=22% Similarity=0.235 Sum_probs=64.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCcee--cCeEEEEEeccC
Q 011693 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL--DGQALECSLAKP 354 (479)
Q Consensus 277 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~--~g~~l~v~~a~~ 354 (479)
+..+.|++-..+-.-|..+|.+||.|.+++.+++- ..|.|+|.+.+.|..|+.+|+|+.+ .|-+.+|.+|+.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 44455566677888999999999999999998875 5899999999999999999999875 588999999987
Q ss_pred CCccC
Q 011693 355 QADQK 359 (479)
Q Consensus 355 ~~~~~ 359 (479)
-....
T Consensus 374 ~~~~e 378 (1007)
T KOG4574|consen 374 LPMYE 378 (1007)
T ss_pred ccccc
Confidence 65433
No 215
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.74 E-value=0.33 Score=46.58 Aligned_cols=71 Identities=23% Similarity=0.467 Sum_probs=60.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCC
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG 170 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g 170 (479)
+..++.|+|-.+|..+|..||..|+..|- .|.+++|++|. --++-.+.|.|++.++|....+.+||..|..
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 34478999999999999999999997664 68999999964 2455669999999999999999999998763
No 216
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.28 E-value=0.63 Score=42.33 Aligned_cols=74 Identities=22% Similarity=0.311 Sum_probs=55.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCe-EEEEEeccC
Q 011693 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQ-ALECSLAKP 354 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~-~l~v~~a~~ 354 (479)
.-|.|-++|... ...|..+|++||.|.......+ -.+-+|.|.+.-+|.+||.. |+..|+|. .|-|+.+..
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~n------gNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPSN------GNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhCeeeeeecCCC------CceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCC
Confidence 456677777654 3467889999999988776522 24889999999999999995 99889875 456766554
Q ss_pred CCc
Q 011693 355 QAD 357 (479)
Q Consensus 355 ~~~ 357 (479)
+..
T Consensus 270 ksv 272 (350)
T KOG4285|consen 270 KSV 272 (350)
T ss_pred HHH
Confidence 443
No 217
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.87 E-value=0.71 Score=44.47 Aligned_cols=68 Identities=9% Similarity=0.175 Sum_probs=59.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcC-CeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecC
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G-~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g 344 (479)
+..|+|-.+|..+|--+|..|+..|- .|.+++|++|.... +=..+|.|.+..+|..-...+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pn--rymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPN--RYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCc--eEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 68999999999999999999998764 48899999965443 4578999999999999999999998875
No 218
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.76 E-value=0.69 Score=42.06 Aligned_cols=72 Identities=19% Similarity=0.231 Sum_probs=54.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeE-EEEeecc
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKK-IRCSTSQ 179 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~-i~v~~~~ 179 (479)
..-|.|-++|+..+. -|..+|++||.|+....- ..-.+-+|.|.+.-+|.+|| ..+++.|.|.. |-|..|.
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KAL-skng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKAL-SKNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhh-hhcCeeeccceEEeeeecC
Confidence 467888888876444 477899999999876543 34568999999999999999 57999998764 4455554
Q ss_pred c
Q 011693 180 A 180 (479)
Q Consensus 180 ~ 180 (479)
+
T Consensus 269 D 269 (350)
T KOG4285|consen 269 D 269 (350)
T ss_pred C
Confidence 3
No 219
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=91.70 E-value=2.9 Score=43.94 Aligned_cols=60 Identities=8% Similarity=0.145 Sum_probs=46.5
Q ss_pred CCCCHHHHHHHHhhcCC-----eEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEecc
Q 011693 285 RNVTQDQLKKLFEHHGR-----ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (479)
Q Consensus 285 ~~~t~~~l~~~F~~~G~-----v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (479)
..++..+|-.++..-+. |-.|.|.. .|.||+. ....|...+..|++..+.|++|.|..+.
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~--------~~s~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYIGNIKLFA--------SHSTIEL-PKGMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhCCcEEEeC--------CceEEEc-ChhhHHHHHHHhccccccCCceEEEECC
Confidence 45677777777766544 44577764 3899999 5667888999999999999999999875
No 220
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=89.09 E-value=2.3 Score=45.24 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=24.2
Q ss_pred CCcceEEEEeCCHHHHHHHHHHhCCCccC
Q 011693 141 ENKGFAFVTFRNVELASKAIDKLNNTEFK 169 (479)
Q Consensus 141 ~~~g~afV~F~~~~~A~~a~~~~~~~~~~ 169 (479)
.-+||-||+=.-...++.||+-+-+....
T Consensus 208 ~lkGyIYIEA~KqshV~~Ai~gv~niy~~ 236 (1024)
T KOG1999|consen 208 HLKGYIYIEADKQSHVKEAIEGVRNIYAN 236 (1024)
T ss_pred ccceeEEEEechhHHHHHHHhhhhhheec
Confidence 36999999999999999999877665555
No 221
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=88.73 E-value=0.29 Score=49.36 Aligned_cols=70 Identities=20% Similarity=0.221 Sum_probs=62.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
+..-+|||+||...+..+-++.++..+|-|.+++... |+|..|.....+..|+..++...+++..+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 4567999999999999999999999999998887654 899999999999999999999999888777654
No 222
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=88.68 E-value=2.5 Score=30.38 Aligned_cols=58 Identities=24% Similarity=0.452 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHhcC-----CeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeec
Q 011693 112 DASEHDLRDFCQSIG-----EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (479)
Q Consensus 112 ~~t~~~l~~~f~~~G-----~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 178 (479)
.++..+|..++...+ .|-.|.|..+ |+||+-... .|..+++.|++..+.|++|+|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 478888888887764 3667777654 789988766 678888899999999999999764
No 223
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=88.61 E-value=0.33 Score=50.30 Aligned_cols=70 Identities=24% Similarity=0.377 Sum_probs=58.4
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCcc--CCeEEEEeecc
Q 011693 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF--KGKKIRCSTSQ 179 (479)
Q Consensus 104 l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~--~g~~i~v~~~~ 179 (479)
..+.|.+-..+-..|..+|.+||.|.+++..++. ..|.|.|.+.+.|..|+++++|+.+ .|-+.+|.+++
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 4455566667788899999999999999988774 3699999999999999999999985 47778887765
No 224
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=88.53 E-value=2 Score=30.01 Aligned_cols=55 Identities=15% Similarity=0.251 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Q 011693 112 DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (479)
Q Consensus 112 ~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v 175 (479)
.++-++|+..+..|.-. +|..++ | | -||.|.+..+|++|....++..+....|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 37889999999999632 344443 2 2 589999999999999999999888777654
No 225
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=88.25 E-value=0.69 Score=34.32 Aligned_cols=56 Identities=20% Similarity=0.379 Sum_probs=41.1
Q ss_pred EEEEeCCHHHHHHHHHHhCCC--ccCCeEEEE---------------eecccccccccCCCCCCCCHHHHHHHH
Q 011693 146 AFVTFRNVELASKAIDKLNNT--EFKGKKIRC---------------STSQAKYRLFIGNIPRNWGSEDLQKVV 202 (479)
Q Consensus 146 afV~F~~~~~A~~a~~~~~~~--~~~g~~i~v---------------~~~~~~~~l~v~~l~~~~~~~~l~~~f 202 (479)
|.|+|.+..-|.+.++. ..+ .+.+..+.| ....+++++.|.+||..++++.|++.+
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 68999999999999953 332 234444444 334467899999999999999888753
No 226
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=87.33 E-value=0.31 Score=46.44 Aligned_cols=7 Identities=14% Similarity=0.301 Sum_probs=3.2
Q ss_pred CCHHHHH
Q 011693 113 ASEHDLR 119 (479)
Q Consensus 113 ~t~~~l~ 119 (479)
+|.++|.
T Consensus 190 LT~eDF~ 196 (324)
T PF05285_consen 190 LTPEDFA 196 (324)
T ss_pred CCHHHHH
Confidence 3444444
No 227
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.87 E-value=3.5 Score=41.21 Aligned_cols=79 Identities=22% Similarity=0.307 Sum_probs=61.7
Q ss_pred cccEEEEcCCCCC-CCHHHHHHHHhhc----CCeEEEEecCCCCCC----------C-----------------------
Q 011693 274 QVKAVYVKNLPRN-VTQDQLKKLFEHH----GRITKVVVPPAKPGQ----------E----------------------- 315 (479)
Q Consensus 274 ~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~v~~v~i~~~~~~~----------~----------------------- 315 (479)
.+++|-|-||.|+ +...+|.-+|+.| |.|.+|.|.+...+. .
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 3589999999987 5788999999887 689999998754221 1
Q ss_pred --------------cccEEEEEeCChHHHHHHHHHhCCceecC--eEEEEEec
Q 011693 316 --------------KNRIGFVHFAERSSAMKALKNTEKYELDG--QALECSLA 352 (479)
Q Consensus 316 --------------~~G~afV~F~~~~~A~~A~~~l~~~~~~g--~~l~v~~a 352 (479)
..=||.|+|.+...|.+....++|..|.. ..|-+.|-
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 11279999999999999999999999975 44555443
No 228
>PF11081 DUF2890: Protein of unknown function (DUF2890); InterPro: IPR021304 This entry contains the 33kDa and 22kDa phosphoproteins from vertebrate adenoviruses.
Probab=83.69 E-value=0.49 Score=40.24 Aligned_cols=6 Identities=33% Similarity=0.650 Sum_probs=2.8
Q ss_pred CCcccc
Q 011693 1 MPREME 6 (479)
Q Consensus 1 ~~~~~~ 6 (479)
||.++-
T Consensus 1 m~p~~~ 6 (187)
T PF11081_consen 1 MPPKKN 6 (187)
T ss_pred CCCCCc
Confidence 555433
No 229
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=83.42 E-value=0.45 Score=48.60 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=11.5
Q ss_pred EEEEeCChHHHHHHHHHhCCceecC
Q 011693 320 GFVHFAERSSAMKALKNTEKYELDG 344 (479)
Q Consensus 320 afV~F~~~~~A~~A~~~l~~~~~~g 344 (479)
-||...+.++-..|++.|-...+.+
T Consensus 624 IFcsImsaeDyiDAFEklLkL~LK~ 648 (822)
T KOG2141|consen 624 IFCSIMSAEDYIDAFEKLLKLSLKG 648 (822)
T ss_pred heeeeecchHHHHHHHHHHhccCCC
Confidence 3444445555555554443333333
No 230
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=83.10 E-value=1.2 Score=46.10 Aligned_cols=19 Identities=16% Similarity=0.088 Sum_probs=9.2
Q ss_pred EEEcCCCCCCCHHHHHHHH
Q 011693 104 VYIGGIPHDASEHDLRDFC 122 (479)
Q Consensus 104 l~V~nLp~~~t~~~l~~~f 122 (479)
.-++.+|--++.++...++
T Consensus 958 k~~~d~pvFAsaeey~hll 976 (988)
T KOG2038|consen 958 KGLNDSPVFASAEEYAHLL 976 (988)
T ss_pred hccccchhhhhHHHHHHHh
Confidence 3445555444444444443
No 231
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=82.02 E-value=42 Score=30.94 Aligned_cols=61 Identities=11% Similarity=0.237 Sum_probs=48.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC-------CCCCcceEEEEeCCHHHHHHHH
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKD-------SSENKGFAFVTFRNVELASKAI 160 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-------~g~~~g~afV~F~~~~~A~~a~ 160 (479)
..|.|.+.||..+++-..+...|-+||+|++|.++.+.. .-.......+.|-+.+.+....
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFY 81 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFY 81 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHH
Confidence 367899999999999999999999999999999998751 1233456888898888665443
No 232
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=81.98 E-value=8 Score=41.39 Aligned_cols=24 Identities=13% Similarity=0.318 Sum_probs=17.1
Q ss_pred CCceEEEEEeCCHhHHHHHHHhcc
Q 011693 223 NNRGFAFIEYHNHKCAEYSRQKMT 246 (479)
Q Consensus 223 ~~~g~~fv~f~~~~~a~~a~~~~~ 246 (479)
.-+||-||+-........|++-+.
T Consensus 208 ~lkGyIYIEA~KqshV~~Ai~gv~ 231 (1024)
T KOG1999|consen 208 HLKGYIYIEADKQSHVKEAIEGVR 231 (1024)
T ss_pred ccceeEEEEechhHHHHHHHhhhh
Confidence 357888888777777777766554
No 233
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=80.55 E-value=1.8 Score=36.40 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=57.2
Q ss_pred cEEEEcCCCCCCC-----HHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCe-EEEE
Q 011693 276 KAVYVKNLPRNVT-----QDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQ-ALEC 349 (479)
Q Consensus 276 ~~l~V~nLp~~~t-----~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~-~l~v 349 (479)
..+++.+|+..+- ......+|.+|-...-..+++.. ++.-|.|.+++.|..|..+++...|.|+ .+++
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf------rrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF------RRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh------ceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 4577777776553 23456777777666666666543 5677999999999999999999999998 8899
Q ss_pred EeccCCCc
Q 011693 350 SLAKPQAD 357 (479)
Q Consensus 350 ~~a~~~~~ 357 (479)
-++.+...
T Consensus 85 yfaQ~~~~ 92 (193)
T KOG4019|consen 85 YFAQPGHP 92 (193)
T ss_pred EEccCCCc
Confidence 88877654
No 234
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=80.09 E-value=18 Score=37.95 Aligned_cols=21 Identities=5% Similarity=0.268 Sum_probs=9.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhh
Q 011693 276 KAVYVKNLPRNVTQDQLKKLFEH 298 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l~~~F~~ 298 (479)
..|||.+-.... +-|+++.++
T Consensus 668 d~Lfi~~~hp~~--e~i~~lysk 688 (931)
T KOG2044|consen 668 DLLFISDKHPLF--EFILQLYSK 688 (931)
T ss_pred ceEEecCCCchH--HHHHHHHHh
Confidence 456665544333 444444444
No 235
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=78.33 E-value=6.8 Score=35.28 Aligned_cols=82 Identities=21% Similarity=0.407 Sum_probs=51.8
Q ss_pred ccEEEEcCCCCCC------------CHHHHHHHHhhcCCeEEEEecCCC-----CCCCc-----ccEE---------EEE
Q 011693 275 VKAVYVKNLPRNV------------TQDQLKKLFEHHGRITKVVVPPAK-----PGQEK-----NRIG---------FVH 323 (479)
Q Consensus 275 ~~~l~V~nLp~~~------------t~~~l~~~F~~~G~v~~v~i~~~~-----~~~~~-----~G~a---------fV~ 323 (479)
..+|++.+||..+ +++.|+..|+.||.|..|.|+.-. -+++. .||+ ||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 4789999998542 567899999999999999887532 22222 3443 355
Q ss_pred eCChHHHHHHHHHhCCcee----cC----eEEEEEeccCCC
Q 011693 324 FAERSSAMKALKNTEKYEL----DG----QALECSLAKPQA 356 (479)
Q Consensus 324 F~~~~~A~~A~~~l~~~~~----~g----~~l~v~~a~~~~ 356 (479)
|....--..|+.+|.|..+ .+ ..++|.+...+.
T Consensus 229 fmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsrh 269 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSRH 269 (445)
T ss_pred HHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhhh
Confidence 5555555566666665443 22 356666655443
No 236
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=77.88 E-value=5.5 Score=36.06 Aligned_cols=47 Identities=21% Similarity=0.352 Sum_probs=35.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeE-EEEecCCCCCCCcccEEEEEeCCh
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRIT-KVVVPPAKPGQEKNRIGFVHFAER 327 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~-~v~i~~~~~~~~~~G~afV~F~~~ 327 (479)
..-|+|+||+.++...+|+..+.+-+.+- ++..- + ++|-||++|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk----g--~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK----G--HFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeee----c--CCcceeEecCCc
Confidence 36799999999999999999999987643 22221 1 157899999764
No 237
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=76.94 E-value=1.8 Score=32.14 Aligned_cols=69 Identities=16% Similarity=0.250 Sum_probs=41.0
Q ss_pred EEEEeCCHhHHHHHHHhccCCCcccCCCCCeeeeCCCC--CCCC---CCCccccEEEEcCCCCCCCHHHHHHHHh
Q 011693 228 AFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR--NVDS---SGASQVKAVYVKNLPRNVTQDQLKKLFE 297 (479)
Q Consensus 228 ~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~l~V~nLp~~~t~~~l~~~F~ 297 (479)
|.|+|.....|.+.++.-.- .+.+....+.+....-. .... ......++|.|.|||...+++.|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~-~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKH-PVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEE-EEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 57899999988887765332 22333333322221111 1000 2223348899999999999999988653
No 238
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=76.90 E-value=6.5 Score=37.47 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=31.7
Q ss_pred CCceEEEcCCCCC-CCHHHHHHHHHhc----CCeeEEEEeeC
Q 011693 100 HGSEVYIGGIPHD-ASEHDLRDFCQSI----GEVTEVRIMKG 136 (479)
Q Consensus 100 ~~~~l~V~nLp~~-~t~~~l~~~f~~~----G~v~~v~i~~~ 136 (479)
...+|-|-||.|+ +...+|...|+.| |+|..|.|+..
T Consensus 145 ~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 145 PTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred cccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 4678999999999 8889999999887 67888888775
No 239
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=76.09 E-value=0.85 Score=46.26 Aligned_cols=11 Identities=9% Similarity=0.142 Sum_probs=2.2
Q ss_pred EEEEEeccCCC
Q 011693 346 ALECSLAKPQA 356 (479)
Q Consensus 346 ~l~v~~a~~~~ 356 (479)
.|.++|..+..
T Consensus 456 ~itlSWk~~~~ 466 (556)
T PF05918_consen 456 NITLSWKEAKK 466 (556)
T ss_dssp ----TTS----
T ss_pred ccceeeeeccc
Confidence 46777766555
No 240
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=75.90 E-value=1.5 Score=45.92 Aligned_cols=13 Identities=8% Similarity=0.079 Sum_probs=5.9
Q ss_pred CHhHHHHHHHhcc
Q 011693 234 NHKCAEYSRQKMT 246 (479)
Q Consensus 234 ~~~~a~~a~~~~~ 246 (479)
+..++..|+..+.
T Consensus 400 SA~D~v~al~ALL 412 (622)
T PF02724_consen 400 SASDVVYALTALL 412 (622)
T ss_pred eHHHHHHHHHHHh
Confidence 3344444444443
No 241
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=75.50 E-value=0.9 Score=46.09 Aligned_cols=10 Identities=40% Similarity=0.521 Sum_probs=5.2
Q ss_pred HHHHHHHhCC
Q 011693 330 AMKALKNTEK 339 (479)
Q Consensus 330 A~~A~~~l~~ 339 (479)
...|++..++
T Consensus 427 ~~~aLkt~~N 436 (556)
T PF05918_consen 427 KVTALKTTNN 436 (556)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 4455655554
No 242
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=75.28 E-value=0.74 Score=47.12 Aligned_cols=11 Identities=36% Similarity=0.507 Sum_probs=4.5
Q ss_pred CCCCCHHHHHH
Q 011693 284 PRNVTQDQLKK 294 (479)
Q Consensus 284 p~~~t~~~l~~ 294 (479)
|-.+|+++|..
T Consensus 553 ~l~vTledll~ 563 (822)
T KOG2141|consen 553 PLSVTLEDLLH 563 (822)
T ss_pred cccccHHHhhC
Confidence 33344444433
No 243
>COG4907 Predicted membrane protein [Function unknown]
Probab=74.54 E-value=2.9 Score=40.55 Aligned_cols=16 Identities=13% Similarity=0.206 Sum_probs=5.8
Q ss_pred cEEEEEeCChHHHHHH
Q 011693 318 RIGFVHFAERSSAMKA 333 (479)
Q Consensus 318 G~afV~F~~~~~A~~A 333 (479)
|--++..-.......|
T Consensus 418 G~ky~~~~~vatii~a 433 (595)
T COG4907 418 GLKYEHIGCVATIIFA 433 (595)
T ss_pred CCEEEEehhHHHHHHH
Confidence 3333333333333333
No 244
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=73.97 E-value=0.62 Score=45.99 Aligned_cols=71 Identities=14% Similarity=0.207 Sum_probs=56.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCe
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGK 171 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~ 171 (479)
.|+|||+|+++.++-.+|..+++.+--+..+.+.....-.+...+.||+|+---....|+.+|++..+...
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 58899999999999999999999987777776655544456677899999887777777777777766543
No 245
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=72.42 E-value=8.8 Score=27.01 Aligned_cols=63 Identities=10% Similarity=0.275 Sum_probs=48.4
Q ss_pred HHHHHHHHhcC-CeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecccc
Q 011693 116 HDLRDFCQSIG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (479)
Q Consensus 116 ~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~ 181 (479)
++|.+-|...| +|..|.-+..+.++.....-||++....+..++ ++=..|.+..|.|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 56888898888 688888888877788888899999887664443 3556788899999876543
No 246
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=72.26 E-value=2.1 Score=44.74 Aligned_cols=11 Identities=27% Similarity=0.709 Sum_probs=5.2
Q ss_pred HHHHHHHHhhC
Q 011693 196 EDLQKVVSEVG 206 (479)
Q Consensus 196 ~~l~~~f~~~g 206 (479)
..|+.+|.+.|
T Consensus 337 krL~~lLAkMG 347 (622)
T PF02724_consen 337 KRLHKLLAKMG 347 (622)
T ss_pred HHHHHHHHHhC
Confidence 34444444444
No 247
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=72.20 E-value=3 Score=37.12 Aligned_cols=6 Identities=17% Similarity=0.263 Sum_probs=2.4
Q ss_pred EEEEeC
Q 011693 146 AFVTFR 151 (479)
Q Consensus 146 afV~F~ 151 (479)
+.|++.
T Consensus 284 ~~ve~E 289 (303)
T KOG3064|consen 284 VHVEIE 289 (303)
T ss_pred ceEEee
Confidence 344443
No 248
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.17 E-value=1.2e+02 Score=30.07 Aligned_cols=8 Identities=13% Similarity=0.393 Sum_probs=3.4
Q ss_pred EEEcCCCC
Q 011693 104 VYIGGIPH 111 (479)
Q Consensus 104 l~V~nLp~ 111 (479)
+.+.-||.
T Consensus 187 ~ll~elPp 194 (483)
T KOG2236|consen 187 HLLDELPP 194 (483)
T ss_pred hhhhcCCC
Confidence 33444444
No 249
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=69.28 E-value=21 Score=26.28 Aligned_cols=56 Identities=20% Similarity=0.237 Sum_probs=42.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cCC-eEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHH
Q 011693 278 VYVKNLPRNVTQDQLKKLFEH-HGR-ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (479)
Q Consensus 278 l~V~nLp~~~t~~~l~~~F~~-~G~-v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~ 336 (479)
-|+--++..++..+|++.++. |+. |.+|+.+.-+.+. --|||+|.....|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~---KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGE---KKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc---EEEEEEeCCCCcHHHHHHh
Confidence 444556788999999999998 564 7788877766332 2699999998888877554
No 250
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=69.15 E-value=2.5 Score=40.35 Aligned_cols=8 Identities=13% Similarity=0.260 Sum_probs=3.2
Q ss_pred CCHHHHHH
Q 011693 193 WGSEDLQK 200 (479)
Q Consensus 193 ~~~~~l~~ 200 (479)
++..+|..
T Consensus 231 v~~~dIe~ 238 (324)
T PF05285_consen 231 VDPSDIEG 238 (324)
T ss_pred CCHHHHHh
Confidence 34444433
No 251
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=69.10 E-value=6.5 Score=36.18 Aligned_cols=8 Identities=38% Similarity=0.763 Sum_probs=3.0
Q ss_pred CCCCCCCC
Q 011693 468 GDGGHGQR 475 (479)
Q Consensus 468 ~~g~~g~r 475 (479)
|+||..+|
T Consensus 263 GGGGasg~ 270 (271)
T COG1512 263 GGGGASGS 270 (271)
T ss_pred CCCCCCCC
Confidence 33333334
No 252
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=68.99 E-value=3.6 Score=32.52 Aligned_cols=57 Identities=18% Similarity=0.264 Sum_probs=30.5
Q ss_pred cEEEEcCCCCCC---------CHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCCh-HHHHHHHH
Q 011693 276 KAVYVKNLPRNV---------TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAER-SSAMKALK 335 (479)
Q Consensus 276 ~~l~V~nLp~~~---------t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~-~~A~~A~~ 335 (479)
-++.|-|++... +.+.|++.|+.|..++ |+.+.++.+. .|+++|.|.+. .--..|+.
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh--~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGH--TGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEE--EEEEEEE--SSHHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCC--cEEEEEEECCChHHHHHHHH
Confidence 467788886543 5688999999998764 5565655533 58999999853 33334433
No 253
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.45 E-value=10 Score=35.78 Aligned_cols=18 Identities=28% Similarity=0.593 Sum_probs=11.5
Q ss_pred CCHHHHHHHHhhcCCeEE
Q 011693 287 VTQDQLKKLFEHHGRITK 304 (479)
Q Consensus 287 ~t~~~l~~~F~~~G~v~~ 304 (479)
.+...|++.|...+.|..
T Consensus 216 ~~~a~lKeV~p~a~ki~e 233 (377)
T KOG1308|consen 216 ANSATLKEVFPNAGKIEE 233 (377)
T ss_pred HHHHHHHHhccchhhhhh
Confidence 355677777777666543
No 254
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.37 E-value=0.95 Score=43.35 Aligned_cols=83 Identities=11% Similarity=0.056 Sum_probs=67.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccCC
Q 011693 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 355 (479)
.+.|+..||..+++.+|.-+|..||.|..+.+-+.-+++..+-.+||+-. ..+|..+|..+.-..+.+..++|.++...
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~-~~~~~~~i~~~k~q~~~~~~~r~~~~~~s 82 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAK-KANGPNYIQPQKRQTTFESQDRKAVSPSS 82 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeee-ccCcccccCHHHHhhhhhhhhhhhcCchh
Confidence 46788899999999999999999999999998888777776678888874 45677777777777788888988888655
Q ss_pred CccC
Q 011693 356 ADQK 359 (479)
Q Consensus 356 ~~~~ 359 (479)
...+
T Consensus 83 ~~~r 86 (572)
T KOG4365|consen 83 SEKR 86 (572)
T ss_pred hhhh
Confidence 4433
No 255
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.05 E-value=30 Score=33.17 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=45.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCC-eEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHH
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGR-ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~-v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~ 336 (479)
.+.|-|.++|...-.++|..+|+.|+. =.+|..+.+. .||-.|.+...|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 478999999999999999999999965 2345555543 899999999999999984
No 256
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=67.07 E-value=12 Score=41.40 Aligned_cols=15 Identities=20% Similarity=0.446 Sum_probs=6.4
Q ss_pred CCCCCCCHHHHHHHH
Q 011693 108 GIPHDASEHDLRDFC 122 (479)
Q Consensus 108 nLp~~~t~~~l~~~f 122 (479)
.||.+...-+|..+.
T Consensus 1448 ~lp~~~~k~~mssiV 1462 (1640)
T KOG0262|consen 1448 KLPLDKEKLDMSSIV 1462 (1640)
T ss_pred EecCCCcchHHHHHH
Confidence 344444444444333
No 257
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=66.71 E-value=29 Score=25.12 Aligned_cols=57 Identities=19% Similarity=0.242 Sum_probs=42.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHhh-cCC-eEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHH
Q 011693 277 AVYVKNLPRNVTQDQLKKLFEH-HGR-ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (479)
Q Consensus 277 ~l~V~nLp~~~t~~~l~~~F~~-~G~-v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~ 336 (479)
.-|+-.++..++..+|+..++. |+. |..|+.+.-+.+. --|||++..-+.|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~---KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGE---KKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc---eEEEEEECCCCcHHHHHHh
Confidence 3556667889999999999988 554 7777776665332 2699999988888776544
No 258
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=65.94 E-value=13 Score=26.03 Aligned_cols=62 Identities=15% Similarity=0.232 Sum_probs=47.4
Q ss_pred HHHHHHHHhcC-CeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 011693 116 HDLRDFCQSIG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (479)
Q Consensus 116 ~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 180 (479)
.+|.+-|..+| .|..|.-+..+++......-||+.....+... .++=+.|.+++|.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 46888999999 78889888888877777888888877654444 2455678889999987654
No 259
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=65.82 E-value=4.4 Score=36.43 Aligned_cols=69 Identities=28% Similarity=0.451 Sum_probs=46.0
Q ss_pred CCceEEEcCCCCC------------CCHHHHHHHHHhcCCeeEEEEee-CC----CCCCCcc-----e---------EEE
Q 011693 100 HGSEVYIGGIPHD------------ASEHDLRDFCQSIGEVTEVRIMK-GK----DSSENKG-----F---------AFV 148 (479)
Q Consensus 100 ~~~~l~V~nLp~~------------~t~~~l~~~f~~~G~v~~v~i~~-~~----~~g~~~g-----~---------afV 148 (479)
...||++.+||-. -+++-|+..|..||.|..|.|.. |+ .+|+..| | |||
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 3568999999843 35778999999999998887753 22 2444433 3 446
Q ss_pred EeCCHHHHHHHHHHhCCCcc
Q 011693 149 TFRNVELASKAIDKLNNTEF 168 (479)
Q Consensus 149 ~F~~~~~A~~a~~~~~~~~~ 168 (479)
+|..-.--..|+..|.+..+
T Consensus 228 qfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHhHHHHHHHHhcchH
Confidence 66555555666666666554
No 260
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=65.37 E-value=1 Score=44.54 Aligned_cols=70 Identities=13% Similarity=0.168 Sum_probs=53.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecC
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g 344 (479)
.+.|||+|++++.+-.+|..+|..+-.+..+.+....--.....+.+|+|.-.-+...|+-+||+..+..
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 4789999999999999999999998777666665544333334578999987777777777777765543
No 261
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=64.89 E-value=35 Score=26.49 Aligned_cols=106 Identities=19% Similarity=0.300 Sum_probs=63.6
Q ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCc--cCCeEEEEeeccccccccc
Q 011693 109 IPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE--FKGKKIRCSTSQAKYRLFI 186 (479)
Q Consensus 109 Lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~--~~g~~i~v~~~~~~~~l~v 186 (479)
||+-++. |.++|+.=|+|.+|..+..- .+ ..|+-.++|.. ++|+ |+|-.......+.|
T Consensus 11 lPPYTnK--LSDYfeSPGKI~svItvtqy-------------pd----ndal~~~~G~lE~vDg~-i~IGs~q~~~sV~i 70 (145)
T TIGR02542 11 LPPYTNK--LSDYFESPGKIQSVITVTQY-------------PD----NDALLYVHGTLEQVDGN-IRIGSGQTPASVRI 70 (145)
T ss_pred cCCccch--hhHHhcCCCceEEEEEEecc-------------CC----chhhheeeeehhhccCc-EEEccCCCcccEEE
Confidence 6666554 99999999999998765421 11 12333445442 4444 66665555555555
Q ss_pred CCC---------CCCCCHHHHHHHHHhhC--CCeeEEEEeecCCCCCCCceEEEEEeCCH
Q 011693 187 GNI---------PRNWGSEDLQKVVSEVG--PGVTGVELVKDMKNSSNNRGFAFIEYHNH 235 (479)
Q Consensus 187 ~~l---------~~~~~~~~l~~~f~~~g--~~i~~~~~~~~~~~~~~~~g~~fv~f~~~ 235 (479)
.+. |..++-.+++++|+.-- .+|..-.+.++ -....+...||..|...
T Consensus 71 ~gTPsgnnv~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rd-GLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 71 QGTPSGNNVIFPPYTLTYNELRQIFREPMVYQGITREQVQRD-GLPEGSYRICFRLFNAT 129 (145)
T ss_pred ecCCCCCceecCceeeeHHHHHHHHhhhhhhccccHHHHhhc-CCCCCceEEEEEEeccc
Confidence 443 45688899999998631 11444444444 23334556788887655
No 262
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=64.26 E-value=9.6 Score=34.55 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=36.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCe-eEEEEeeCCCCCCCcceEEEEeCCHH
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEV-TEVRIMKGKDSSENKGFAFVTFRNVE 154 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v-~~v~i~~~~~~g~~~g~afV~F~~~~ 154 (479)
.+-|+|.|||.++...+|+..+.+.+.+ .++.. .-+.|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCcc
Confidence 4569999999999999999999988754 23322 224678999998754
No 263
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=63.89 E-value=9.4 Score=32.17 Aligned_cols=58 Identities=26% Similarity=0.289 Sum_probs=40.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC-CCCcceEEEEeCCHHHHHHHHHH
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS-SENKGFAFVTFRNVELASKAIDK 162 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-g~~~g~afV~F~~~~~A~~a~~~ 162 (479)
.+++|.. |.+...++|.++-+ |.+..|.+.+.... ...+|..||+|.+.+.|.++++.
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 3567776 44444455555555 68888877664321 26789999999999999998854
No 264
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=63.72 E-value=16 Score=33.49 Aligned_cols=80 Identities=15% Similarity=0.275 Sum_probs=60.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCC-------CCCcccEEEEEeCChHHHHHH----HHHhC--Cce
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKP-------GQEKNRIGFVHFAERSSAMKA----LKNTE--KYE 341 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-------~~~~~G~afV~F~~~~~A~~A----~~~l~--~~~ 341 (479)
++.|.+.||..+++--.+...|-+||.|++|.++.+.. .....-...+.|-+.+.+..- ++.|. ...
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999999999998871 111234788999998877543 33333 235
Q ss_pred ecCeEEEEEeccC
Q 011693 342 LDGQALECSLAKP 354 (479)
Q Consensus 342 ~~g~~l~v~~a~~ 354 (479)
+....|.|+|..-
T Consensus 95 L~S~~L~lsFV~l 107 (309)
T PF10567_consen 95 LKSESLTLSFVSL 107 (309)
T ss_pred cCCcceeEEEEEE
Confidence 7788888888763
No 265
>COG4371 Predicted membrane protein [Function unknown]
Probab=63.58 E-value=18 Score=32.28 Aligned_cols=12 Identities=33% Similarity=0.650 Sum_probs=4.7
Q ss_pred CCcCCCCCCCCC
Q 011693 397 AAAFAQPLVYGR 408 (479)
Q Consensus 397 ~~~~~~~~~~g~ 408 (479)
+..+..|..|.+
T Consensus 55 GgSfraps~~sr 66 (334)
T COG4371 55 GGSFRAPSGYSR 66 (334)
T ss_pred CCCCCCCCCCCC
Confidence 333444444333
No 266
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=62.76 E-value=7.1 Score=42.92 Aligned_cols=10 Identities=20% Similarity=0.448 Sum_probs=4.2
Q ss_pred HHHHHhhcCC
Q 011693 292 LKKLFEHHGR 301 (479)
Q Consensus 292 l~~~F~~~G~ 301 (479)
|...|.-||.
T Consensus 1542 v~~VF~vYGI 1551 (1640)
T KOG0262|consen 1542 VNNVFKVYGI 1551 (1640)
T ss_pred HHHhhhheee
Confidence 3444444443
No 267
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=62.13 E-value=7.9 Score=34.28 Aligned_cols=11 Identities=0% Similarity=-0.055 Sum_probs=4.8
Q ss_pred CCHHHHHHHHH
Q 011693 113 ASEHDLRDFCQ 123 (479)
Q Consensus 113 ~t~~~l~~~f~ 123 (479)
++..+++..|+
T Consensus 150 ~DW~Em~~Ais 160 (217)
T PF07423_consen 150 VDWNEMLKAIS 160 (217)
T ss_pred cCHHHHHHHHH
Confidence 34444444443
No 268
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=61.77 E-value=3.5 Score=44.27 Aligned_cols=14 Identities=21% Similarity=0.382 Sum_probs=7.3
Q ss_pred CcceEEEEeCCHHH
Q 011693 142 NKGFAFVTFRNVEL 155 (479)
Q Consensus 142 ~~g~afV~F~~~~~ 155 (479)
.+.+-.|.|--.-.
T Consensus 930 ~~k~y~ltFi~SIi 943 (1096)
T TIGR00927 930 ARKFFVITFLGSIM 943 (1096)
T ss_pred ccceeeehHHHHHH
Confidence 34455566654433
No 269
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=60.54 E-value=16 Score=34.95 Aligned_cols=57 Identities=21% Similarity=0.250 Sum_probs=44.7
Q ss_pred EEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecccccccccCCCCCCCCHHHHHHHHHh
Q 011693 146 AFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSE 204 (479)
Q Consensus 146 afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~ 204 (479)
|||+|++..+|..|++.+.... .+.+.|..+.+...+.=.||..+..+..++.++..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcccccccccCCChHHHHHHHHHHH
Confidence 7999999999999997554443 35668999998888888898887777777765543
No 270
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=59.26 E-value=14 Score=29.18 Aligned_cols=51 Identities=27% Similarity=0.352 Sum_probs=29.1
Q ss_pred eEEEcCCCCCC---------CHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHH
Q 011693 103 EVYIGGIPHDA---------SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156 (479)
Q Consensus 103 ~l~V~nLp~~~---------t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A 156 (479)
++.|-|+|... +.+.|++.|..|.++. |+.+.++ .-+.|++.|+|...-..
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSG 69 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHH
Confidence 56677776543 5578999999998875 5555554 35789999999875543
No 271
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=57.76 E-value=4.5 Score=43.49 Aligned_cols=9 Identities=22% Similarity=0.456 Sum_probs=4.1
Q ss_pred eEEEcCCCC
Q 011693 103 EVYIGGIPH 111 (479)
Q Consensus 103 ~l~V~nLp~ 111 (479)
.+||--+|.
T Consensus 906 ~~wvl~~Pi 914 (1096)
T TIGR00927 906 AIYLFLLPI 914 (1096)
T ss_pred eEeEEecch
Confidence 345544443
No 272
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=54.04 E-value=9.8 Score=37.87 Aligned_cols=7 Identities=29% Similarity=0.544 Sum_probs=2.8
Q ss_pred CCCCCCC
Q 011693 108 GIPHDAS 114 (479)
Q Consensus 108 nLp~~~t 114 (479)
|-|..+|
T Consensus 534 napkra~ 540 (615)
T KOG0526|consen 534 NAPKRAT 540 (615)
T ss_pred CCCccch
Confidence 3444433
No 273
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=53.52 E-value=47 Score=33.00 Aligned_cols=24 Identities=17% Similarity=0.497 Sum_probs=18.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhc
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSI 125 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~ 125 (479)
..-||++ -|..+++++...|++.+
T Consensus 336 vKpIW~R-~p~eV~EdEYt~FYkSl 359 (785)
T KOG0020|consen 336 VKPIWLR-KPKEVTEDEYTKFYKSL 359 (785)
T ss_pred cchhhcc-CchhcchHHHHHHHHhh
Confidence 3446665 47889999999998876
No 274
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=53.33 E-value=34 Score=23.46 Aligned_cols=18 Identities=22% Similarity=0.645 Sum_probs=14.7
Q ss_pred HHHHHHHHhcCCeeEEEE
Q 011693 116 HDLRDFCQSIGEVTEVRI 133 (479)
Q Consensus 116 ~~l~~~f~~~G~v~~v~i 133 (479)
.+|+++|+..|.|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999865554
No 275
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=52.03 E-value=14 Score=32.75 Aligned_cols=37 Identities=19% Similarity=0.390 Sum_probs=30.9
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEE
Q 011693 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVR 132 (479)
Q Consensus 96 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~ 132 (479)
.......+||+-|||..+|++.|..+.+++|.+..+.
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 4455678999999999999999999999999654443
No 276
>KOG2773 consensus Apoptosis antagonizing transcription factor/protein transport protein [Transcription; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.99 E-value=8 Score=37.67 Aligned_cols=7 Identities=29% Similarity=0.544 Sum_probs=3.6
Q ss_pred CeEEEEE
Q 011693 344 GQALECS 350 (479)
Q Consensus 344 g~~l~v~ 350 (479)
||+|+-.
T Consensus 446 gRKLrY~ 452 (483)
T KOG2773|consen 446 GRKLRYH 452 (483)
T ss_pred Cceeeee
Confidence 5555443
No 277
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=51.22 E-value=11 Score=33.30 Aligned_cols=10 Identities=30% Similarity=0.026 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 011693 153 VELASKAIDK 162 (479)
Q Consensus 153 ~~~A~~a~~~ 162 (479)
-.+-.+||..
T Consensus 152 W~Em~~Ais~ 161 (217)
T PF07423_consen 152 WNEMLKAISY 161 (217)
T ss_pred HHHHHHHHHH
Confidence 3445555543
No 278
>KOG2773 consensus Apoptosis antagonizing transcription factor/protein transport protein [Transcription; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.49 E-value=11 Score=36.84 Aligned_cols=8 Identities=13% Similarity=0.318 Sum_probs=3.4
Q ss_pred CCCCCHHH
Q 011693 284 PRNVTQDQ 291 (479)
Q Consensus 284 p~~~t~~~ 291 (479)
|.-.++.+
T Consensus 390 peifDD~D 397 (483)
T KOG2773|consen 390 PEIFDDSD 397 (483)
T ss_pred ccccCcHH
Confidence 34444443
No 279
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=49.32 E-value=55 Score=23.00 Aligned_cols=63 Identities=11% Similarity=0.238 Sum_probs=45.2
Q ss_pred HHHHHHHhhcCC-eEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccCC
Q 011693 290 DQLKKLFEHHGR-ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (479)
Q Consensus 290 ~~l~~~F~~~G~-v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 355 (479)
++|++.|...|. |..|.-+..+.+...--.-||++....+...++ +=..|++..|+|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehHhhCCeEEEEecCCCC
Confidence 568888888886 778888887766665667889988776644443 334688899888876544
No 280
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=49.29 E-value=74 Score=23.47 Aligned_cols=56 Identities=13% Similarity=0.131 Sum_probs=41.3
Q ss_pred EEEcCCCCCCCHHHHHHHHHh-cC-CeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHH
Q 011693 104 VYIGGIPHDASEHDLRDFCQS-IG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162 (479)
Q Consensus 104 l~V~nLp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~ 162 (479)
-|+=-+..+++..+|+..++. || .|.+|..+.-+ ...--|||++..-..|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHh
Confidence 344446788999999999987 56 67788777654 2334599999999888877643
No 281
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=48.66 E-value=36 Score=29.32 Aligned_cols=11 Identities=36% Similarity=0.501 Sum_probs=5.5
Q ss_pred cEEEEcCCCCC
Q 011693 276 KAVYVKNLPRN 286 (479)
Q Consensus 276 ~~l~V~nLp~~ 286 (479)
+.+.|++|-.+
T Consensus 6 ~V~LiGrLg~D 16 (182)
T PRK06958 6 KVILVGNLGAD 16 (182)
T ss_pred EEEEEEEecCC
Confidence 34555555443
No 282
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=48.60 E-value=18 Score=35.89 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=8.9
Q ss_pred eEEEEeCCHHHHHHHH
Q 011693 145 FAFVTFRNVELASKAI 160 (479)
Q Consensus 145 ~afV~F~~~~~A~~a~ 160 (479)
+-.=.|...+.|-|..
T Consensus 211 W~HDrF~e~eQaPKSr 226 (694)
T KOG4264|consen 211 WKHDRFDEKEQAPKSR 226 (694)
T ss_pred cccccchhhhcCchHH
Confidence 3444676666665543
No 283
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=48.52 E-value=45 Score=23.43 Aligned_cols=62 Identities=10% Similarity=0.077 Sum_probs=45.0
Q ss_pred HHHHHHHhhcCC-eEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccC
Q 011693 290 DQLKKLFEHHGR-ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (479)
Q Consensus 290 ~~l~~~F~~~G~-v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (479)
.+|.+.|..+|- +..|+-+..++++.+-..-||+.....+-.. .|+=..|++++|.|.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 468888999886 8889988888877666677888876544444 2344478899988876543
No 284
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.48 E-value=3.3 Score=39.82 Aligned_cols=78 Identities=6% Similarity=-0.109 Sum_probs=60.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 179 (479)
+.+.||..||..+++.++.-+|..||.|..+.+.+.-+.+..+-.+||+-.+. .+..||..+.-..+++..+++..+.
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~-~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA-NGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc-CcccccCHHHHhhhhhhhhhhhcCc
Confidence 34578899999999999999999999999998888777777777888887654 4566666666666777777776554
No 285
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=46.13 E-value=20 Score=30.38 Aligned_cols=75 Identities=20% Similarity=0.271 Sum_probs=53.7
Q ss_pred ceEEEcCCCCCCC-----HHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCe-EEEE
Q 011693 102 SEVYIGGIPHDAS-----EHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGK-KIRC 175 (479)
Q Consensus 102 ~~l~V~nLp~~~t-----~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~-~i~v 175 (479)
+++.+.+|+..+- ......+|.+|-+.....+++ +.++.-|.|.+++.|..|...++...|.|. .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 4566777765532 223456777776665555544 355678999999999999999999999988 8888
Q ss_pred eeccccc
Q 011693 176 STSQAKY 182 (479)
Q Consensus 176 ~~~~~~~ 182 (479)
-++++..
T Consensus 85 yfaQ~~~ 91 (193)
T KOG4019|consen 85 YFAQPGH 91 (193)
T ss_pred EEccCCC
Confidence 7777543
No 286
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=45.18 E-value=19 Score=31.88 Aligned_cols=35 Identities=17% Similarity=0.472 Sum_probs=29.4
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEe
Q 011693 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i 307 (479)
....+||+-|||..+|++.|..+.+++|.+..+.+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 34489999999999999999999999987655443
No 287
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=44.93 E-value=15 Score=30.52 Aligned_cols=96 Identities=17% Similarity=0.161 Sum_probs=66.4
Q ss_pred CCCHHHHHHHHHh-cCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecccc---------
Q 011693 112 DASEHDLRDFCQS-IGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK--------- 181 (479)
Q Consensus 112 ~~t~~~l~~~f~~-~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~--------- 181 (479)
..+-..|...+.. ++....+.+..- ..++..+.|.+.+++.+++. .....+.+..|.+..-.+.
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~ 101 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFE 101 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhccccccccccee
Confidence 4667777777655 344334444332 35789999999999999994 5555677777777654432
Q ss_pred ---cccccCCCCCC-CCHHHHHHHHHhhCCCeeEEEE
Q 011693 182 ---YRLFIGNIPRN-WGSEDLQKVVSEVGPGVTGVEL 214 (479)
Q Consensus 182 ---~~l~v~~l~~~-~~~~~l~~~f~~~g~~i~~~~~ 214 (479)
--+.|.+||.. ++++.+..+.+.+|. +..+..
T Consensus 102 ~~~vWVri~glP~~~~~~~~~~~i~~~iG~-~i~vD~ 137 (153)
T PF14111_consen 102 HIPVWVRIYGLPLHLWSEEILKAIGSKIGE-PIEVDE 137 (153)
T ss_pred ccchhhhhccCCHHHhhhHHHHHHHHhcCC-eEEEEc
Confidence 12567899987 788889999999998 555544
No 288
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=44.25 E-value=2.3e+02 Score=28.18 Aligned_cols=7 Identities=43% Similarity=0.487 Sum_probs=4.0
Q ss_pred CCHHHHH
Q 011693 113 ASEHDLR 119 (479)
Q Consensus 113 ~t~~~l~ 119 (479)
++++||.
T Consensus 220 ldeEDlY 226 (654)
T COG5180 220 LDEEDLY 226 (654)
T ss_pred cchhhhh
Confidence 5566654
No 289
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=43.30 E-value=10 Score=36.39 Aligned_cols=61 Identities=18% Similarity=0.249 Sum_probs=51.4
Q ss_pred CceEEEcCCCCCCCHH--------HHHHHHHh--cCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHH
Q 011693 101 GSEVYIGGIPHDASEH--------DLRDFCQS--IGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~--------~l~~~f~~--~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~ 161 (479)
.+.+|+.++....+.. ++..+|.. ++++..|...++.....++|..|++|+....+++.+.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4678888887765544 89999988 7788899998887778899999999999999999883
No 290
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=43.04 E-value=15 Score=37.29 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=8.2
Q ss_pred ceEEEcCCCCCC
Q 011693 102 SEVYIGGIPHDA 113 (479)
Q Consensus 102 ~~l~V~nLp~~~ 113 (479)
.+=.|+|||..+
T Consensus 119 ~rntvgnipl~w 130 (733)
T KOG0650|consen 119 TRNTVGNIPLKW 130 (733)
T ss_pred hhcccCCccccc
Confidence 556688888654
No 291
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=42.86 E-value=60 Score=22.28 Aligned_cols=21 Identities=24% Similarity=0.597 Sum_probs=16.3
Q ss_pred HHHHHHHHhhcCCeEEEEecC
Q 011693 289 QDQLKKLFEHHGRITKVVVPP 309 (479)
Q Consensus 289 ~~~l~~~F~~~G~v~~v~i~~ 309 (479)
..+||++|+..|.|.=+.+-.
T Consensus 8 ~~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHHhcCcEEEEEEcc
Confidence 368999999999987655543
No 292
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=42.44 E-value=11 Score=37.79 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=13.6
Q ss_pred ChHHHHHHHHHhCCceecCeEEE
Q 011693 326 ERSSAMKALKNTEKYELDGQALE 348 (479)
Q Consensus 326 ~~~~A~~A~~~l~~~~~~g~~l~ 348 (479)
+.+++++|-+.+....|.|++|+
T Consensus 408 SWeAkkk~Ke~~~~a~FqGKKI~ 430 (432)
T PF09073_consen 408 SWEAKKKAKEKQKIAKFQGKKIV 430 (432)
T ss_pred cHHHHHHHHHHhccCCCCCCccc
Confidence 55666666655555556666654
No 293
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=41.81 E-value=17 Score=36.06 Aligned_cols=8 Identities=13% Similarity=0.023 Sum_probs=4.9
Q ss_pred EEEEEeCC
Q 011693 319 IGFVHFAE 326 (479)
Q Consensus 319 ~afV~F~~ 326 (479)
-|.+.+.+
T Consensus 443 ~ap~~~s~ 450 (694)
T KOG4264|consen 443 RAPSHQSD 450 (694)
T ss_pred cccccccc
Confidence 46666654
No 294
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=41.54 E-value=34 Score=32.77 Aligned_cols=67 Identities=16% Similarity=0.255 Sum_probs=47.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCC-eEEEEecCCCCCC--CcccEEEEEeCChHHHHHHHHHhCCcee
Q 011693 276 KAVYVKNLPRNVTQDQLKKLFEHHGR-ITKVVVPPAKPGQ--EKNRIGFVHFAERSSAMKALKNTEKYEL 342 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l~~~F~~~G~-v~~v~i~~~~~~~--~~~G~afV~F~~~~~A~~A~~~l~~~~~ 342 (479)
..|.|.+||...+..+|.+....|-. |.+..+.....+- .-.+.|||.|.+.++...-...++++.|
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 68999999999999999988888643 4444444322111 1146789999999997666666666554
No 295
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=40.99 E-value=33 Score=35.90 Aligned_cols=18 Identities=6% Similarity=0.301 Sum_probs=12.7
Q ss_pred CCCC----CCHHHHHHHHHhcC
Q 011693 109 IPHD----ASEHDLRDFCQSIG 126 (479)
Q Consensus 109 Lp~~----~t~~~l~~~f~~~G 126 (479)
||+. .|-++|.++++.+-
T Consensus 388 lpfti~~Pk~yeef~~Ll~k~s 409 (823)
T KOG2147|consen 388 LPFTIECPKNYEEFLALLEKLS 409 (823)
T ss_pred CCeeecCCcCHHHHHHHHHccC
Confidence 6655 36778888887764
No 296
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=40.72 E-value=31 Score=34.87 Aligned_cols=8 Identities=13% Similarity=-0.110 Sum_probs=3.5
Q ss_pred EEeCCHHH
Q 011693 148 VTFRNVEL 155 (479)
Q Consensus 148 V~F~~~~~ 155 (479)
|.+.+++.
T Consensus 128 IiV~TP~r 135 (456)
T PRK10590 128 VLVATPGR 135 (456)
T ss_pred EEEEChHH
Confidence 44444443
No 297
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=40.43 E-value=14 Score=36.19 Aligned_cols=10 Identities=20% Similarity=0.604 Sum_probs=6.0
Q ss_pred ccCCeEEEEe
Q 011693 167 EFKGKKIRCS 176 (479)
Q Consensus 167 ~~~g~~i~v~ 176 (479)
.+.||+|.|.
T Consensus 425 SMrGRpItvA 434 (620)
T COG4547 425 SMRGRPITVA 434 (620)
T ss_pred CcCCcceehh
Confidence 3556776664
No 298
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.23 E-value=21 Score=36.55 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=10.1
Q ss_pred HHHHHHHHhcCCeeEEE
Q 011693 116 HDLRDFCQSIGEVTEVR 132 (479)
Q Consensus 116 ~~l~~~f~~~G~v~~v~ 132 (479)
...++-|++|=-+.+.+
T Consensus 465 ~~ArerfqkYRGLksl~ 481 (754)
T KOG1980|consen 465 ESARERFQKYRGLKSLR 481 (754)
T ss_pred hHHHHHHHHhccccccc
Confidence 34667777775555443
No 299
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=39.02 E-value=4.4e+02 Score=26.93 Aligned_cols=13 Identities=23% Similarity=0.258 Sum_probs=8.8
Q ss_pred CCCHHHHHHHHHh
Q 011693 112 DASEHDLRDFCQS 124 (479)
Q Consensus 112 ~~t~~~l~~~f~~ 124 (479)
.++..+|+..|..
T Consensus 82 ~~p~~~lr~aF~~ 94 (582)
T PF03276_consen 82 SAPWNELRRAFDN 94 (582)
T ss_pred cCcHHHHHHHHhc
Confidence 4677777777753
No 300
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=38.74 E-value=39 Score=31.19 Aligned_cols=6 Identities=0% Similarity=0.113 Sum_probs=2.2
Q ss_pred EEEeec
Q 011693 173 IRCSTS 178 (479)
Q Consensus 173 i~v~~~ 178 (479)
|.|.+.
T Consensus 103 LlVa~~ 108 (271)
T COG1512 103 LLVAMN 108 (271)
T ss_pred EEEEcC
Confidence 333333
No 301
>PRK05901 RNA polymerase sigma factor; Provisional
Probab=38.67 E-value=17 Score=36.90 Aligned_cols=13 Identities=23% Similarity=0.585 Sum_probs=9.2
Q ss_pred CceEEEEEeCCHh
Q 011693 224 NRGFAFIEYHNHK 236 (479)
Q Consensus 224 ~~g~~fv~f~~~~ 236 (479)
.+||.|.+|...-
T Consensus 319 ~rG~rFSTYA~wW 331 (509)
T PRK05901 319 TKGYKFSTYATWW 331 (509)
T ss_pred ccCCCchhhhHHH
Confidence 5778888887643
No 302
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=38.66 E-value=1.1e+02 Score=29.60 Aligned_cols=80 Identities=20% Similarity=0.350 Sum_probs=57.4
Q ss_pred ccccEEEEcCCCCC-CCHHHHHHHHhhc----CCeEEEEecCCCCCCC--------------------------------
Q 011693 273 SQVKAVYVKNLPRN-VTQDQLKKLFEHH----GRITKVVVPPAKPGQE-------------------------------- 315 (479)
Q Consensus 273 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~v~~v~i~~~~~~~~-------------------------------- 315 (479)
..+++|-|-||.|+ +...+|..+|+.| |.|..|.|.+...+..
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn~ 223 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDNV 223 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCccc
Confidence 34589999999986 5778999999876 6688788766432110
Q ss_pred ----c----------c-------------------cEEEEEeCChHHHHHHHHHhCCceecC--eEEEEEec
Q 011693 316 ----K----------N-------------------RIGFVHFAERSSAMKALKNTEKYELDG--QALECSLA 352 (479)
Q Consensus 316 ----~----------~-------------------G~afV~F~~~~~A~~A~~~l~~~~~~g--~~l~v~~a 352 (479)
. + -||.|+|.+...+......++|..+.. ..+.+.|.
T Consensus 224 ~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 224 FSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred hhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeec
Confidence 0 1 278999999999999999999887764 34444443
No 303
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=38.11 E-value=1.5e+02 Score=21.39 Aligned_cols=55 Identities=13% Similarity=0.131 Sum_probs=40.5
Q ss_pred EEEcCCCCCCCHHHHHHHHHh-cC-CeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHH
Q 011693 104 VYIGGIPHDASEHDLRDFCQS-IG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161 (479)
Q Consensus 104 l~V~nLp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~ 161 (479)
-|+=.++.+++..+|+..++. |+ .|..|..+.-+ ...--|||++..-..|...-.
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~---~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP---RGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCceEEEEEECCCCcHHHHHH
Confidence 455557889999999999987 55 57777766654 233459999998888877653
No 304
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=37.92 E-value=45 Score=28.30 Aligned_cols=68 Identities=16% Similarity=0.123 Sum_probs=42.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCC-CCcccEEEEEeCChHHHHHHHHHhCCceecCeEEE
Q 011693 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG-QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~-~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~ 348 (479)
+++|.. +.+...++|.++-+ |.+.+|.+-+...+ ...+|-.||+|.+.+.|.+.+.. +.....-..|.
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~-~e~~~~e~el~ 180 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT-HEEKGAETELK 180 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh-hhhhccchHHH
Confidence 455555 33444445555555 67888877766554 23478999999999999987774 33333333443
No 305
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=37.47 E-value=31 Score=33.04 Aligned_cols=68 Identities=19% Similarity=0.257 Sum_probs=46.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEeeCCCC--CCCcceEEEEeCCHHHHHHHHHHhCCCcc
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGE-VTEVRIMKGKDS--SENKGFAFVTFRNVELASKAIDKLNNTEF 168 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~-v~~v~i~~~~~~--g~~~g~afV~F~~~~~A~~a~~~~~~~~~ 168 (479)
-+.|.|++||+..|+.+|.+-...|-. |....+.+.... ..-.+.|||.|...++...-....++..+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 467999999999999999887777542 333333321100 12256799999999997777777777654
No 306
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=36.76 E-value=12 Score=34.76 Aligned_cols=8 Identities=0% Similarity=-0.027 Sum_probs=5.0
Q ss_pred CceEEEcC
Q 011693 101 GSEVYIGG 108 (479)
Q Consensus 101 ~~~l~V~n 108 (479)
...+|..+
T Consensus 84 t~~~F~~~ 91 (285)
T PF03896_consen 84 TTILFPKP 91 (285)
T ss_pred EEEEeccc
Confidence 45667766
No 307
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=36.23 E-value=38 Score=32.28 Aligned_cols=35 Identities=26% Similarity=0.196 Sum_probs=26.1
Q ss_pred EEEEeCChHHHHHHHHHhCCceecCeEEEEEeccCCC
Q 011693 320 GFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA 356 (479)
Q Consensus 320 afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 356 (479)
|||+|.+..+|..|++.+.... .+.+.+..|.++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcc
Confidence 7999999999999999755433 3556777765543
No 308
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=35.87 E-value=1.5e+02 Score=20.99 Aligned_cols=62 Identities=18% Similarity=0.188 Sum_probs=36.3
Q ss_pred ceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc-ccccccCCCCCCCCHHHHHHHHHhhCC
Q 011693 144 GFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA-KYRLFIGNIPRNWGSEDLQKVVSEVGP 207 (479)
Q Consensus 144 g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~-~~~l~v~~l~~~~~~~~l~~~f~~~g~ 207 (479)
.+.+|.|.+..+|.+|-+.|....+..+-+-+-..-. .+-+.+. ++ ..+.+.+..+++..+-
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~liP~P~~i~~~CG~al~-~~-~~d~~~i~~~l~~~~i 64 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRLIPTPREISAGCGLALR-FE-PEDLEKIKEILEENGI 64 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEEeCCChhccCCCCEEEE-EC-hhhHHHHHHHHHHCCC
Confidence 3689999999999999988877766555443311111 1111111 11 1355666777776664
No 309
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=35.60 E-value=11 Score=35.11 Aligned_cols=15 Identities=7% Similarity=0.100 Sum_probs=5.7
Q ss_pred EEEEcCCCCCCCHHH
Q 011693 277 AVYVKNLPRNVTQDQ 291 (479)
Q Consensus 277 ~l~V~nLp~~~t~~~ 291 (479)
+|-|--.+..++.+.
T Consensus 193 TV~IvE~~~~~D~e~ 207 (285)
T PF03896_consen 193 TVTIVEPESGFDPET 207 (285)
T ss_pred eEEEeecCCCcChhh
Confidence 333333333344333
No 310
>PF04050 Upf2: Up-frameshift suppressor 2 ; InterPro: IPR007193 This entry represents Up-frameshift suppressor 2 (also known as Nonsense-mediated mRNA decay protein 2). Transcripts harbouring premature signals for translation termination are recognised and rapidly degraded by eukaryotic cells through a pathway known as nonsense-mediated mRNA decay. In Saccharomyces cerevisiae, three trans-acting factors (Upf1 to Upf3) are required for nonsense-mediated mRNA decay [].; PDB: 2WJV_D.
Probab=35.55 E-value=14 Score=31.57 Aligned_cols=7 Identities=29% Similarity=0.230 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 011693 117 DLRDFCQ 123 (479)
Q Consensus 117 ~l~~~f~ 123 (479)
+|..-|.
T Consensus 64 dFeref~ 70 (170)
T PF04050_consen 64 DFEREFQ 70 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 311
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=33.07 E-value=1.6e+02 Score=24.22 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=38.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cCC-eEEEEecCCCCCCCcccEEEEEeCChHHHHHHH
Q 011693 278 VYVKNLPRNVTQDQLKKLFEH-HGR-ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334 (479)
Q Consensus 278 l~V~nLp~~~t~~~l~~~F~~-~G~-v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~ 334 (479)
-|+--+...++..+|++.++. |+. |..|..+.-+.+.. -|||.+....+|....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~K---KA~V~L~~~~~aidva 139 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLK---KAYIRLSPDVDALDVA 139 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCce---EEEEEECCCCcHHHHH
Confidence 444556778999999999988 554 77777776654333 6999997777665443
No 312
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=32.80 E-value=20 Score=34.41 Aligned_cols=60 Identities=15% Similarity=0.154 Sum_probs=48.8
Q ss_pred cEEEEcCCCCCCCH--------HHHHHHHhh--cCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHH
Q 011693 276 KAVYVKNLPRNVTQ--------DQLKKLFEH--HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335 (479)
Q Consensus 276 ~~l~V~nLp~~~t~--------~~l~~~F~~--~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~ 335 (479)
+.+|+.+.+...+. ++|...|.. ++.+..|+..++.....++|..|++|...+.|++.+.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 56777777665544 499999999 6778888888888677778999999999999999874
No 313
>KOG4357 consensus Uncharacterized conserved protein (involved in mesoderm differentiation in humans) [General function prediction only]
Probab=31.20 E-value=2.5e+02 Score=22.24 Aligned_cols=22 Identities=32% Similarity=0.306 Sum_probs=17.9
Q ss_pred EEEEeCCHHHHHHHHHHhCCCc
Q 011693 146 AFVTFRNVELASKAIDKLNNTE 167 (479)
Q Consensus 146 afV~F~~~~~A~~a~~~~~~~~ 167 (479)
|..-|++-+.|-.|...|-+..
T Consensus 116 aifm~kdge~a~e~k~fll~qd 137 (164)
T KOG4357|consen 116 AIFMFKDGEQAFEAKDFLLGQD 137 (164)
T ss_pred EEEEEeChhHHHHHHHHhhccc
Confidence 8899999999988887665544
No 314
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=30.91 E-value=38 Score=34.02 Aligned_cols=21 Identities=14% Similarity=0.267 Sum_probs=11.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhh
Q 011693 278 VYVKNLPRNVTQDQLKKLFEH 298 (479)
Q Consensus 278 l~V~nLp~~~t~~~l~~~F~~ 298 (479)
.++-|++..+++.-|+..+.+
T Consensus 476 k~~p~~~~~v~e~~vR~~l~r 496 (555)
T KOG2393|consen 476 KTVPGSDIKVNEEAVRRYLER 496 (555)
T ss_pred ccCCCcccchhHHHHHHHHhh
Confidence 334444555666666666553
No 315
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=30.50 E-value=85 Score=23.18 Aligned_cols=26 Identities=42% Similarity=0.552 Sum_probs=21.7
Q ss_pred CeeEEEEeeCCCCCCCcceEEEEeCC
Q 011693 127 EVTEVRIMKGKDSSENKGFAFVTFRN 152 (479)
Q Consensus 127 ~v~~v~i~~~~~~g~~~g~afV~F~~ 152 (479)
+|++|+|.+-...++.++||-|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47888888877679999999999976
No 316
>PF03286 Pox_Ag35: Pox virus Ag35 surface protein; InterPro: IPR004966 The Pox virus Ag35 surface protein is an evelope protein known as protein H5.; GO: 0019031 viral envelope
Probab=28.55 E-value=26 Score=30.59 Aligned_cols=7 Identities=71% Similarity=0.937 Sum_probs=2.9
Q ss_pred HHHHHHh
Q 011693 157 SKAIDKL 163 (479)
Q Consensus 157 ~~a~~~~ 163 (479)
.++|+.|
T Consensus 172 ~K~i~~l 178 (200)
T PF03286_consen 172 SKAIEEL 178 (200)
T ss_pred HHHHHHH
Confidence 3444443
No 317
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=28.40 E-value=1.6e+02 Score=21.58 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=25.5
Q ss_pred CeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCce
Q 011693 301 RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE 341 (479)
Q Consensus 301 ~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~ 341 (479)
.|.++..+.+- +||-||+=.+..++..|++.+.+..
T Consensus 33 ~I~Si~~~~~l-----kGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAPDSL-----KGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE-TTS-----TSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEeCCC-----ceEEEEEeCCHHHHHHHHhccccee
Confidence 46677666653 8999999999999999998876543
No 318
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=28.03 E-value=35 Score=35.54 Aligned_cols=10 Identities=20% Similarity=0.202 Sum_probs=4.3
Q ss_pred hHHHHHHHHH
Q 011693 327 RSSAMKALKN 336 (479)
Q Consensus 327 ~~~A~~A~~~ 336 (479)
..+|..+|..
T Consensus 516 I~eah~~L~e 525 (595)
T PF05470_consen 516 IKEAHQCLSE 525 (595)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 319
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=27.60 E-value=48 Score=32.68 Aligned_cols=9 Identities=22% Similarity=0.575 Sum_probs=3.7
Q ss_pred HHHHHHhhC
Q 011693 198 LQKVVSEVG 206 (479)
Q Consensus 198 l~~~f~~~g 206 (479)
|...+..+|
T Consensus 441 lArtLeRcg 449 (620)
T COG4547 441 LARTLERCG 449 (620)
T ss_pred HHHHHHHcC
Confidence 334444444
No 320
>PF12782 Innate_immun: Invertebrate innate immunity transcript family
Probab=27.59 E-value=3.2e+02 Score=23.76 Aligned_cols=6 Identities=33% Similarity=0.274 Sum_probs=2.3
Q ss_pred HHHHHH
Q 011693 330 AMKALK 335 (479)
Q Consensus 330 A~~A~~ 335 (479)
|..||.
T Consensus 13 aalais 18 (311)
T PF12782_consen 13 AALAIS 18 (311)
T ss_pred HHHHHH
Confidence 333343
No 321
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=27.40 E-value=59 Score=32.68 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=15.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHH
Q 011693 102 SEVYIGGIPHDASEHDLRDFCQ 123 (479)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~ 123 (479)
++-.|+.||--++.++...++.
T Consensus 799 rk~~lk~lpvfa~ad~ya~~ld 820 (821)
T COG5593 799 RKNMLKSLPVFASADDYAQYLD 820 (821)
T ss_pred HHHHHhcCCcccchHHHHHHhc
Confidence 4456778888888777766653
No 322
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=27.38 E-value=47 Score=39.14 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=7.6
Q ss_pred eEEEEeCCHHHHHHHH
Q 011693 145 FAFVTFRNVELASKAI 160 (479)
Q Consensus 145 ~afV~F~~~~~A~~a~ 160 (479)
|-.|+ .+.+.-..|+
T Consensus 4204 f~hv~-~d~e~d~qal 4218 (4600)
T COG5271 4204 FMHVK-EDEEEDLQAL 4218 (4600)
T ss_pred heeec-ccchhHHHHh
Confidence 44555 4455444555
No 323
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=27.04 E-value=48 Score=32.55 Aligned_cols=8 Identities=38% Similarity=0.405 Sum_probs=3.4
Q ss_pred eeEEEEee
Q 011693 128 VTEVRIMK 135 (479)
Q Consensus 128 v~~v~i~~ 135 (479)
|+.|.+..
T Consensus 145 ~~~vals~ 152 (479)
T KOG0299|consen 145 VTSVALSP 152 (479)
T ss_pred ceEEEeec
Confidence 44444433
No 324
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=26.96 E-value=78 Score=22.43 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=21.3
Q ss_pred cEEEEEeCChHHHHHHHHHhCCceec
Q 011693 318 RIGFVHFAERSSAMKALKNTEKYELD 343 (479)
Q Consensus 318 G~afV~F~~~~~A~~A~~~l~~~~~~ 343 (479)
.+.+|.|.+..+|.+|-+.|....|.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~ 27 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIP 27 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCc
Confidence 36899999999999999887765553
No 325
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=26.84 E-value=72 Score=34.32 Aligned_cols=119 Identities=16% Similarity=0.143 Sum_probs=0.0
Q ss_pred ccccccCCCCcCCCCCCCCCCCCCCCCCCcccchhhhhhhhhcchhhhHHhhhhhh---------hhhhhhhhhcccccc
Q 011693 6 ESASAAAEPVELEKPVGSDEKVDFDEDNDPEETMEEEYEYEEVEEEEEEEVIEEEV---------EEEVEEEEEDADAGK 76 (479)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~ee~~~e~~~~~e~---------ee~~~~e~~~~~~~~ 76 (479)
...+...+.-..+..-...+-.+.+.++.+...+++|+++++++.++.+.....+. +..++.++++++++.
T Consensus 18 ~~~e~ek~~lg~k~~~~d~~~~~de~~~~~~~i~d~e~dde~v~~e~~e~v~~~~~~~f~s~~~e~~~d~~ee~~deee~ 97 (895)
T KOG2076|consen 18 SNMEREKEVLGEKTNLSDENNNDDEIDDEDRDIDDEEEDDEDVESEDVEGVEASEHPDFESSLYESLADEKEEAEDEEES 97 (895)
T ss_pred cchhhhhHHhcccccchhhcCCcccccchhccccchhhccCCCchhhhhhhhcccccccccccchhhccccchhhccccc
Q ss_pred CCCCccchhHHHhhHHhhhcCCCCCceEEEcCCCCCCCHHHHHHHHHh
Q 011693 77 SGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQS 124 (479)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~ 124 (479)
....+.+....-+.-+-..........-.=+.-+...-..+|+.+|+.
T Consensus 98 ~~n~~~e~p~~~~~~~~e~~~s~~~~k~~~~~r~~~~l~~~l~~ll~e 145 (895)
T KOG2076|consen 98 EANETYEEPEGLKQFKGEGEKSTGTKKRGRRSRGKSKLAPELRQLLGE 145 (895)
T ss_pred hhhcccccCchhhhhhhhheecccCCccCCCCCcccccCHHHHHHHHH
No 326
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=26.49 E-value=2e+02 Score=19.14 Aligned_cols=54 Identities=11% Similarity=0.152 Sum_probs=41.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCCh----HHHHHHHHH
Q 011693 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAER----SSAMKALKN 336 (479)
Q Consensus 277 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~----~~A~~A~~~ 336 (479)
+|.|.||.-.--...|.+.+...-.|.++.+-... +.+-|.|... ++..++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHH
Confidence 46788887777788999999999889999887664 6788999744 455555554
No 327
>PF11532 HnRNP_M: Heterogeneous nuclear ribonucleoprotein M; InterPro: IPR024666 Heterogeneous nuclear ribonucleoproteins (hnRNPs) bind directly to nascent RNA polymerase II transcripts and play an important role in both transcript-specific packaging and alternative splicing of pre-mRNAs []. hnRNP M proteins are an abundant group of hnRNPs that have been shown to bind avidly to poly(G) and poly(U) RNA homopolymers []. hnRNP M family members are able to induce exon skipping and promote exon inclusion, suggesting that the proteins may broadly contribute to the fidelity of splice site recognition and alternative splicing regulation []. This entry represents the N-terminal PY nuclear localisation signal of heterogeneous nuclear ribonucleoprotein M [].; PDB: 2OT8_C.
Probab=26.42 E-value=25 Score=19.76 Aligned_cols=7 Identities=57% Similarity=1.564 Sum_probs=1.3
Q ss_pred CCCCCCC
Q 011693 473 GQRYRPY 479 (479)
Q Consensus 473 g~r~~py 479 (479)
|+||-||
T Consensus 18 g~rfEPY 24 (30)
T PF11532_consen 18 GNRFEPY 24 (30)
T ss_dssp -----SS
T ss_pred Ccccccc
Confidence 4566666
No 328
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=26.05 E-value=29 Score=34.77 Aligned_cols=13 Identities=15% Similarity=0.184 Sum_probs=6.2
Q ss_pred ccccCCCCCCCCH
Q 011693 183 RLFIGNIPRNWGS 195 (479)
Q Consensus 183 ~l~v~~l~~~~~~ 195 (479)
.|.|++|.-...+
T Consensus 284 ~L~vGGL~lk~QE 296 (691)
T KOG0338|consen 284 GLAVGGLDLKAQE 296 (691)
T ss_pred eeeecCccHHHHH
Confidence 4455555544333
No 329
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=25.52 E-value=1.1e+02 Score=23.15 Aligned_cols=26 Identities=38% Similarity=0.501 Sum_probs=21.0
Q ss_pred CeeEEEEeeCCCCCCCcceEEEEeCC
Q 011693 127 EVTEVRIMKGKDSSENKGFAFVTFRN 152 (479)
Q Consensus 127 ~v~~v~i~~~~~~g~~~g~afV~F~~ 152 (479)
+|++|+|.+-...|+-++||-|+|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 47788887765568999999999976
No 330
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.20 E-value=54 Score=33.79 Aligned_cols=8 Identities=50% Similarity=0.613 Sum_probs=3.9
Q ss_pred CCCCCCCH
Q 011693 108 GIPHDASE 115 (479)
Q Consensus 108 nLp~~~t~ 115 (479)
.-||+..+
T Consensus 482 Ts~Wd~~E 489 (754)
T KOG1980|consen 482 TSPWDAKE 489 (754)
T ss_pred cCCCcccc
Confidence 33555544
No 331
>PF05793 TFIIF_alpha: Transcription initiation factor IIF, alpha subunit (TFIIF-alpha); InterPro: IPR008851 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II [].; GO: 0003677 DNA binding, 0045893 positive regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1F3U_F 1NHA_A 1I27_A 1J2X_A 2K7L_A 1ONV_A.
Probab=25.03 E-value=24 Score=36.25 Aligned_cols=17 Identities=18% Similarity=0.503 Sum_probs=8.0
Q ss_pred CCCHHHHHHHHhhcCCeE
Q 011693 286 NVTQDQLKKLFEHHGRIT 303 (479)
Q Consensus 286 ~~t~~~l~~~F~~~G~v~ 303 (479)
.+|++.|+.++.. ..|+
T Consensus 463 ~vTEe~VrryL~r-kPmT 479 (527)
T PF05793_consen 463 GVTEEEVRRYLRR-KPMT 479 (527)
T ss_dssp S--HHHHHHHHHH-S-B-
T ss_pred CcCHHHHHHHHhc-CCcc
Confidence 4577777777663 3443
No 332
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=25.02 E-value=2.4e+02 Score=29.07 Aligned_cols=91 Identities=15% Similarity=0.254 Sum_probs=57.8
Q ss_pred eEEEEEeCCHhHHHHHHHhccCCCcccCCC---CCee---------eeCCCCCC---CCCCCccccEEEEcCCCCCCCHH
Q 011693 226 GFAFIEYHNHKCAEYSRQKMTNPNFKLGTN---APTV---------SWADPRNV---DSSGASQVKAVYVKNLPRNVTQD 290 (479)
Q Consensus 226 g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~---~~~~---------~~~~~~~~---~~~~~~~~~~l~V~nLp~~~t~~ 290 (479)
--||+++.+....+--...++..++..+.. .++. ++++...- -......+..||+.+|+.+..++
T Consensus 237 i~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~d 316 (621)
T COG0445 237 IPCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPED 316 (621)
T ss_pred cceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCHH
Confidence 368999998887776666666555443211 1111 11111100 00222335899999999999988
Q ss_pred HHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEe
Q 011693 291 QLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHF 324 (479)
Q Consensus 291 ~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F 324 (479)
-=.++....--.++++|++. ||| |+|
T Consensus 317 VQ~~~irsipGlEna~i~rp-------gYA-IEY 342 (621)
T COG0445 317 VQEQIIRSIPGLENAEILRP-------GYA-IEY 342 (621)
T ss_pred HHHHHHHhCcccccceeecc-------cee-eee
Confidence 88888888777889999873 677 566
No 333
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=24.90 E-value=56 Score=19.63 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=10.4
Q ss_pred CCCCHHHHHHHHHhcC
Q 011693 111 HDASEHDLRDFCQSIG 126 (479)
Q Consensus 111 ~~~t~~~l~~~f~~~G 126 (479)
.++++++|++.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3688999999998764
No 334
>PRK07772 single-stranded DNA-binding protein; Provisional
Probab=24.64 E-value=1.4e+02 Score=25.88 Aligned_cols=11 Identities=27% Similarity=0.305 Sum_probs=5.5
Q ss_pred cEEEEcCCCCC
Q 011693 276 KAVYVKNLPRN 286 (479)
Q Consensus 276 ~~l~V~nLp~~ 286 (479)
...+|+||-.+
T Consensus 6 ~VtLiGrL~~D 16 (186)
T PRK07772 6 TITVVGNLTAD 16 (186)
T ss_pred EEEEEEEeCCC
Confidence 34555666443
No 335
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=23.87 E-value=31 Score=23.24 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=18.9
Q ss_pred ccEEEEEeCC-hHHHHHHHHHhCCceecCeEEEEEecc
Q 011693 317 NRIGFVHFAE-RSSAMKALKNTEKYELDGQALECSLAK 353 (479)
Q Consensus 317 ~G~afV~F~~-~~~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (479)
+|||||...+ ..+.--.-..|++ -++|-++.|.+..
T Consensus 8 ~GfGFv~~~~~~~DifIp~~~l~~-A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 8 KGFGFVIPDDGGEDIFIPPRNLNG-AMDGDKVLVRITP 44 (58)
T ss_dssp SS-EEEEECT-TEEEEE-HHHHTT-S-TT-EEEEEEEE
T ss_pred CCCEEEEECCCCCCEEECHHHHCC-CCCCCEEEEEEec
Confidence 6999999987 2221112223443 4667777777765
No 336
>PF12782 Innate_immun: Invertebrate innate immunity transcript family
Probab=23.76 E-value=4.4e+02 Score=22.96 Aligned_cols=8 Identities=25% Similarity=0.526 Sum_probs=3.0
Q ss_pred cCCCCCCC
Q 011693 399 AFAQPLVY 406 (479)
Q Consensus 399 ~~~~~~~~ 406 (479)
+++.|.+.
T Consensus 70 gfgap~m~ 77 (311)
T PF12782_consen 70 GFGAPQMD 77 (311)
T ss_pred CCCCCCCC
Confidence 33333333
No 337
>PTZ00438 gamete antigen 27/25-like protein; Provisional
Probab=23.15 E-value=19 Score=32.34 Aligned_cols=22 Identities=9% Similarity=0.022 Sum_probs=12.3
Q ss_pred HHHHHHHhhcCCeEEEEecCCC
Q 011693 290 DQLKKLFEHHGRITKVVVPPAK 311 (479)
Q Consensus 290 ~~l~~~F~~~G~v~~v~i~~~~ 311 (479)
+-|+-+|..+-.+..+.+..++
T Consensus 311 eLIK~y~E~~i~~n~l~lTDdQ 332 (374)
T PTZ00438 311 ELIKFYHEELITDNGLFLTDEQ 332 (374)
T ss_pred HHHHHHHHHHhhccCeecchhh
Confidence 4455566666555555555544
No 338
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=22.35 E-value=44 Score=33.57 Aligned_cols=15 Identities=27% Similarity=0.213 Sum_probs=7.9
Q ss_pred EEEEeCCHHHHHHHH
Q 011693 146 AFVTFRNVELASKAI 160 (479)
Q Consensus 146 afV~F~~~~~A~~a~ 160 (479)
..|...+.+-|..+.
T Consensus 255 VLVL~PTRELaiQv~ 269 (691)
T KOG0338|consen 255 VLVLVPTRELAIQVH 269 (691)
T ss_pred EEEEeccHHHHHHHH
Confidence 455555666554443
No 339
>PF05793 TFIIF_alpha: Transcription initiation factor IIF, alpha subunit (TFIIF-alpha); InterPro: IPR008851 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II [].; GO: 0003677 DNA binding, 0045893 positive regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1F3U_F 1NHA_A 1I27_A 1J2X_A 2K7L_A 1ONV_A.
Probab=21.76 E-value=30 Score=35.52 Aligned_cols=13 Identities=31% Similarity=0.401 Sum_probs=5.5
Q ss_pred CCCHHHHHHHHhh
Q 011693 286 NVTQDQLKKLFEH 298 (479)
Q Consensus 286 ~~t~~~l~~~F~~ 298 (479)
-+|..+|...|..
T Consensus 477 PmTTkdLL~kFk~ 489 (527)
T PF05793_consen 477 PMTTKDLLKKFKS 489 (527)
T ss_dssp -B-HHHHHHHTSH
T ss_pred CccHHHHHHHHHh
Confidence 3455555555533
No 340
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=21.71 E-value=59 Score=32.55 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=14.1
Q ss_pred hhcCCCCCceEEEcCCCCCCC
Q 011693 94 LLALPPHGSEVYIGGIPHDAS 114 (479)
Q Consensus 94 ~~~~~~~~~~l~V~nLp~~~t 114 (479)
.+..++.+.+++-+.|.+++.
T Consensus 172 al~~Dp~GaR~~sGs~Dy~v~ 192 (641)
T KOG0772|consen 172 ALAVDPSGARFVSGSLDYTVK 192 (641)
T ss_pred EeeecCCCceeeeccccceEE
Confidence 344566677888888877653
No 341
>PRK02302 hypothetical protein; Provisional
Probab=21.68 E-value=2.9e+02 Score=20.67 Aligned_cols=62 Identities=23% Similarity=0.308 Sum_probs=37.5
Q ss_pred HHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecccccccccCCCCCC
Q 011693 121 FCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRN 192 (479)
Q Consensus 121 ~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~~~l~v~~l~~~ 192 (479)
-+.+||.|..+.-.. . -.|-|-+.++|...++.+....+- +.+..+.-..=..-|.++|.+.
T Consensus 22 ~LrkfG~I~Y~Skk~--------k-YvvlYvn~~~~e~~~~kl~~l~fV-k~Ve~S~~~~l~~~f~~~l~r~ 83 (89)
T PRK02302 22 KLSKYGDIVYHSKRS--------R-YLVLYVNKEDVEQKLEELSKLKFV-KKVRPSAIDEIDQNFVGNLYRD 83 (89)
T ss_pred HHhhcCcEEEEeccc--------c-EEEEEECHHHHHHHHHHHhcCCCe-eEEcccCchhccchhhhhhhcc
Confidence 457899998764222 2 446788999999999888765432 3333333333344455665543
No 342
>KOG1307 consensus K+-dependent Ca2+/Na+ exchanger NCKX1 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=21.37 E-value=59 Score=32.19 Aligned_cols=74 Identities=23% Similarity=0.170 Sum_probs=0.0
Q ss_pred CcccccccccCCCCcCCCCCCCCCCCCCCCCCCcccchhhhhhhhhcchhhhHHhhhhhhhhhhhhhhhccccc
Q 011693 2 PREMESASAAAEPVELEKPVGSDEKVDFDEDNDPEETMEEEYEYEEVEEEEEEEVIEEEVEEEVEEEEEDADAG 75 (479)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~ee~~~e~~~~~e~ee~~~~e~~~~~~~ 75 (479)
.+..++..++..........-...-.-.....+..+-+..+..+++.++.+.+.++.++.+++.++++++++++
T Consensus 310 ~~~~~~~~k~~~~~i~~~~~h~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~e~~e~ 383 (588)
T KOG1307|consen 310 EDDNENGEKAVNIKIDIGDTHELDITGPNSGGRTSDVERIDVSDEEEEEAENENEDNEEFEEEQESEEEEPEEE 383 (588)
T ss_pred ccccccccccccccccccccceecccCCCCCcccCccccCCccccccchhcccCCCCcchhhcchhhhccccCC
No 343
>PHA01632 hypothetical protein
Probab=20.81 E-value=1.1e+02 Score=20.35 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=17.2
Q ss_pred EEEcCCCCCCCHHHHHHHHHh
Q 011693 104 VYIGGIPHDASEHDLRDFCQS 124 (479)
Q Consensus 104 l~V~nLp~~~t~~~l~~~f~~ 124 (479)
|.|..+|..-|+++|+..+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 456789999999999987654
No 344
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=20.62 E-value=59 Score=33.49 Aligned_cols=11 Identities=18% Similarity=0.410 Sum_probs=5.2
Q ss_pred HHHHHHHHhhc
Q 011693 289 QDQLKKLFEHH 299 (479)
Q Consensus 289 ~~~l~~~F~~~ 299 (479)
+.+|+.+...+
T Consensus 542 ~~hLr~vi~~~ 552 (600)
T TIGR01651 542 ERHLRAVIEEI 552 (600)
T ss_pred HHHHHHHHHHH
Confidence 34455554443
No 345
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=20.39 E-value=2.9e+02 Score=18.73 Aligned_cols=49 Identities=14% Similarity=0.199 Sum_probs=32.6
Q ss_pred CHHHHHHHHhhcCC-eEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCce
Q 011693 288 TQDQLKKLFEHHGR-ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE 341 (479)
Q Consensus 288 t~~~l~~~F~~~G~-v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~ 341 (479)
.-.+|-++|.+.|. |.++.+..... +++--+.+.+.+.|.++|+. +|+.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~----~~~~rl~~~~~~~~~~~L~~-~G~~ 63 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE----FGILRLIVSDPDKAKEALKE-AGFA 63 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC----CCEEEEEECCHHHHHHHHHH-CCCE
Confidence 45678888888765 77887655432 35666667777777777764 4443
No 346
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=20.08 E-value=3.8e+02 Score=23.41 Aligned_cols=47 Identities=17% Similarity=0.123 Sum_probs=34.4
Q ss_pred CHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhC
Q 011693 114 SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN 164 (479)
Q Consensus 114 t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~ 164 (479)
+.++.++++..++.-. +.|..| |...|-+.+...+.++|..|+..+-
T Consensus 25 ~~~~A~~~l~~~~~p~-~ViKad---Gla~GKGV~i~~~~~eA~~~l~~~~ 71 (194)
T PF01071_consen 25 DYEEALEYLEEQGYPY-VVIKAD---GLAAGKGVVIADDREEALEALREIF 71 (194)
T ss_dssp SHHHHHHHHHHHSSSE-EEEEES---SSCTTTSEEEESSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCc-eEEccC---CCCCCCEEEEeCCHHHHHHHHHHhc
Confidence 6777888888876433 455555 5666667788899999999998663
Done!