Query 011693
Match_columns 479
No_of_seqs 434 out of 3687
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 13:24:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011693.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011693hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ghp_A U4/U6 snRNA-associated 100.0 6.4E-45 2.2E-49 343.7 27.4 250 96-355 36-291 (292)
2 3smz_A Protein raver-1, ribonu 100.0 6.9E-45 2.4E-49 342.0 26.8 247 100-359 21-268 (284)
3 4f02_A Polyadenylate-binding p 100.0 2.9E-36 9.8E-41 270.1 16.2 172 100-359 14-185 (213)
4 1l3k_A Heterogeneous nuclear r 100.0 1.5E-34 5.1E-39 256.2 20.6 181 96-360 8-188 (196)
5 3md3_A Nuclear and cytoplasmic 100.0 7.1E-34 2.4E-38 244.8 20.8 166 102-354 1-166 (166)
6 1b7f_A Protein (SXL-lethal pro 100.0 7.4E-34 2.5E-38 245.2 19.6 165 100-352 2-168 (168)
7 2qfj_A FBP-interacting repress 100.0 2.7E-33 9.4E-38 252.1 23.0 181 101-358 28-208 (216)
8 1fxl_A Paraneoplastic encephal 100.0 2.4E-33 8.2E-38 241.7 21.3 164 101-352 2-167 (167)
9 2cjk_A Nuclear polyadenylated 100.0 4.5E-34 1.6E-38 246.3 15.7 165 100-355 2-166 (167)
10 3nmr_A Cugbp ELAV-like family 100.0 1.7E-32 5.9E-37 238.3 19.4 166 100-353 2-175 (175)
11 2yh0_A Splicing factor U2AF 65 100.0 3.4E-31 1.2E-35 234.9 22.2 183 100-357 3-196 (198)
12 1fje_B Nucleolin RBD12, protei 100.0 3.2E-32 1.1E-36 236.5 14.3 166 97-355 9-174 (175)
13 2g4b_A Splicing factor U2AF 65 100.0 2.4E-31 8.3E-36 230.3 19.5 159 100-353 3-172 (172)
14 3tyt_A Heterogeneous nuclear r 100.0 5E-31 1.7E-35 233.2 19.6 194 100-352 3-204 (205)
15 3pgw_A U1-A; protein-RNA compl 100.0 3.2E-30 1.1E-34 241.7 25.3 246 98-353 6-281 (282)
16 2adc_A Polypyrimidine tract-bi 100.0 3.6E-30 1.2E-34 233.1 22.0 194 98-355 31-228 (229)
17 1qm9_A Polypyrimidine tract-bi 100.0 6.3E-30 2.2E-34 226.6 18.9 191 101-355 3-197 (198)
18 3sde_A Paraspeckle component 1 100.0 1.1E-29 3.7E-34 234.7 18.4 160 98-358 19-182 (261)
19 3smz_A Protein raver-1, ribonu 99.9 2.5E-26 8.6E-31 215.4 18.3 164 98-266 92-265 (284)
20 2ghp_A U4/U6 snRNA-associated 99.9 1.5E-25 5.2E-30 211.0 15.1 162 99-265 115-291 (292)
21 2kn4_A Immunoglobulin G-bindin 99.9 3.7E-23 1.3E-27 175.8 18.9 85 274-358 69-153 (158)
22 4f25_A Polyadenylate-binding p 99.9 5.6E-22 1.9E-26 158.3 10.1 98 98-197 2-113 (115)
23 2i2y_A Fusion protein consists 99.9 2.8E-21 9.4E-26 162.4 13.9 139 140-356 10-149 (150)
24 4fxv_A ELAV-like protein 1; RN 99.9 2E-21 6.7E-26 150.3 10.9 80 275-354 19-98 (99)
25 4fxv_A ELAV-like protein 1; RN 99.9 2.5E-21 8.4E-26 149.7 11.3 82 99-180 17-98 (99)
26 2lxi_A RNA-binding protein 10; 99.8 6.1E-21 2.1E-25 145.2 8.6 83 276-358 2-86 (91)
27 3q2s_C Cleavage and polyadenyl 99.8 1.4E-21 4.9E-26 175.2 4.4 82 275-356 68-151 (229)
28 3s8s_A Histone-lysine N-methyl 99.8 3.7E-20 1.3E-24 145.8 11.3 84 98-181 3-86 (110)
29 2lxi_A RNA-binding protein 10; 99.8 1.1E-20 3.9E-25 143.7 6.9 83 101-183 1-85 (91)
30 2lkz_A RNA-binding protein 5; 99.8 2.9E-20 9.9E-25 141.8 8.9 81 274-354 8-94 (95)
31 3s8s_A Histone-lysine N-methyl 99.8 7.2E-20 2.5E-24 144.2 11.2 85 274-358 5-89 (110)
32 1whw_A Hypothetical protein ri 99.8 3E-19 1E-23 138.6 13.6 86 273-358 6-91 (99)
33 2lkz_A RNA-binding protein 5; 99.8 2.5E-20 8.5E-25 142.1 7.0 81 100-180 8-94 (95)
34 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.4E-19 4.9E-24 153.0 12.1 85 273-357 37-121 (156)
35 2dnz_A Probable RNA-binding pr 99.8 3E-19 1E-23 137.5 12.3 84 274-357 4-87 (95)
36 2dgs_A DAZ-associated protein 99.8 4.2E-19 1.4E-23 137.8 13.0 86 273-359 8-93 (99)
37 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.4E-19 4.9E-24 154.3 11.1 130 230-359 11-156 (165)
38 2dnm_A SRP46 splicing factor; 99.8 3.1E-19 1.1E-23 139.6 12.1 87 272-358 10-96 (103)
39 2dgo_A Cytotoxic granule-assoc 99.8 1E-18 3.5E-23 139.7 15.3 88 272-359 12-99 (115)
40 1x5u_A Splicing factor 3B subu 99.8 4.9E-19 1.7E-23 139.0 13.1 89 271-359 11-99 (105)
41 2lea_A Serine/arginine-rich sp 99.8 6.4E-20 2.2E-24 150.4 8.3 125 227-358 6-130 (135)
42 1x5t_A Splicing factor 3B subu 99.8 2.6E-19 8.9E-24 138.2 11.2 86 274-359 4-90 (96)
43 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3.7E-19 1.3E-23 138.9 12.0 87 273-359 10-96 (102)
44 3pgw_S U1-70K; protein-RNA com 99.8 6.5E-20 2.2E-24 179.9 9.4 86 272-357 99-184 (437)
45 3md1_A Nuclear and cytoplasmic 99.8 3.1E-19 1.1E-23 133.7 11.0 81 276-356 2-82 (83)
46 3q2s_C Cleavage and polyadenyl 99.8 6.7E-20 2.3E-24 164.4 8.7 82 100-181 67-150 (229)
47 1x5s_A Cold-inducible RNA-bind 99.8 3.5E-19 1.2E-23 139.1 11.7 87 273-359 10-96 (102)
48 2cpz_A CUG triplet repeat RNA- 99.8 4.2E-19 1.4E-23 141.9 12.4 88 272-359 22-109 (115)
49 2cq0_A Eukaryotic translation 99.8 3.7E-19 1.3E-23 139.2 11.8 87 272-358 12-98 (103)
50 3bs9_A Nucleolysin TIA-1 isofo 99.8 3.5E-19 1.2E-23 134.7 10.7 82 274-355 5-86 (87)
51 2x1f_A MRNA 3'-END-processing 99.8 5.7E-19 2E-23 136.1 12.0 84 275-358 2-85 (96)
52 1x4h_A RNA-binding protein 28; 99.8 1.1E-18 3.8E-23 138.5 14.0 88 272-359 12-105 (111)
53 2cph_A RNA binding motif prote 99.8 9.2E-19 3.1E-23 138.0 13.2 88 272-359 12-101 (107)
54 2dnz_A Probable RNA-binding pr 99.8 4.6E-19 1.6E-23 136.5 11.1 85 98-182 2-86 (95)
55 3mdf_A Peptidyl-prolyl CIS-tra 99.8 4.4E-19 1.5E-23 133.5 10.6 80 274-353 6-85 (85)
56 3lqv_A PRE-mRNA branch site pr 99.8 3.1E-19 1.1E-23 142.6 10.4 105 98-207 5-109 (115)
57 2cqc_A Arginine/serine-rich sp 99.8 8E-19 2.7E-23 135.2 12.2 84 271-354 11-94 (95)
58 3bs9_A Nucleolysin TIA-1 isofo 99.8 4.6E-19 1.6E-23 134.1 10.7 82 100-181 5-86 (87)
59 2cqd_A RNA-binding region cont 99.8 1.8E-18 6.1E-23 138.4 14.7 86 272-358 14-99 (116)
60 2dgp_A Bruno-like 4, RNA bindi 99.8 8.8E-19 3E-23 137.8 12.3 87 272-358 10-99 (106)
61 1whw_A Hypothetical protein ri 99.8 6.1E-19 2.1E-23 136.9 11.2 86 98-183 5-90 (99)
62 3mdf_A Peptidyl-prolyl CIS-tra 99.8 4.5E-19 1.5E-23 133.5 10.1 82 98-179 4-85 (85)
63 4f25_A Polyadenylate-binding p 99.8 3.6E-19 1.2E-23 141.9 10.1 82 276-359 6-87 (115)
64 1u6f_A Tcubp1, RNA-binding pro 99.8 1.7E-18 5.9E-23 143.4 14.6 88 271-358 38-125 (139)
65 2do4_A Squamous cell carcinoma 99.8 8.4E-19 2.9E-23 136.3 11.9 85 272-357 14-98 (100)
66 2e5h_A Zinc finger CCHC-type a 99.8 1.1E-18 3.8E-23 134.1 12.4 82 272-353 13-94 (94)
67 3md1_A Nuclear and cytoplasmic 99.8 7E-19 2.4E-23 131.8 10.9 81 101-181 1-81 (83)
68 2x1f_A MRNA 3'-END-processing 99.8 3.9E-19 1.3E-23 137.0 9.4 84 101-184 2-85 (96)
69 2cqc_A Arginine/serine-rich sp 99.8 6.4E-19 2.2E-23 135.7 10.6 83 98-180 12-94 (95)
70 2cpf_A RNA binding motif prote 99.8 5E-19 1.7E-23 137.1 10.0 86 274-359 4-92 (98)
71 1wi8_A EIF-4B, eukaryotic tran 99.8 1.7E-18 5.8E-23 135.6 13.1 85 273-359 13-98 (104)
72 2cqi_A Nucleolysin TIAR; RNA r 99.8 3.4E-18 1.2E-22 133.7 14.7 86 272-359 12-97 (103)
73 2dgx_A KIAA0430 protein; RRM d 99.8 1.9E-18 6.6E-23 133.0 13.0 81 274-357 8-92 (96)
74 1oo0_B CG8781-PA, drosophila Y 99.8 1.2E-18 4E-23 138.1 12.2 86 272-357 23-108 (110)
75 2dng_A Eukaryotic translation 99.8 1.5E-18 5.1E-23 135.7 12.5 86 272-359 12-97 (103)
76 2e5h_A Zinc finger CCHC-type a 99.8 6.9E-19 2.4E-23 135.2 10.4 83 97-179 12-94 (94)
77 2cpe_A RNA-binding protein EWS 99.8 1.4E-18 4.8E-23 138.4 12.5 87 272-358 12-106 (113)
78 2wbr_A GW182, gawky, LD47780P; 99.8 9.2E-19 3.2E-23 127.8 10.3 73 275-353 7-79 (89)
79 2cq3_A RNA-binding protein 9; 99.8 3.1E-18 1.1E-22 133.9 14.1 86 272-359 12-97 (103)
80 2d9p_A Polyadenylate-binding p 99.8 1E-18 3.5E-23 136.7 11.3 87 272-360 12-98 (103)
81 1x5s_A Cold-inducible RNA-bind 99.8 7.2E-19 2.5E-23 137.3 10.3 86 97-182 8-93 (102)
82 2dnh_A Bruno-like 5, RNA bindi 99.8 1.5E-18 5E-23 136.3 12.0 86 273-359 13-101 (105)
83 2fy1_A RNA-binding motif prote 99.8 1.9E-18 6.6E-23 137.7 12.9 83 275-358 7-89 (116)
84 2dgs_A DAZ-associated protein 99.8 1E-18 3.5E-23 135.5 11.0 84 98-182 7-90 (99)
85 1sjq_A Polypyrimidine tract-bi 99.8 9.4E-19 3.2E-23 134.5 10.5 80 274-359 15-96 (105)
86 1x5u_A Splicing factor 3B subu 99.8 8.9E-19 3.1E-23 137.5 10.6 85 98-182 12-96 (105)
87 3p5t_L Cleavage and polyadenyl 99.8 2.2E-19 7.4E-24 136.6 6.9 80 102-181 2-83 (90)
88 3ns6_A Eukaryotic translation 99.8 2.2E-19 7.4E-24 139.3 6.9 82 275-356 6-94 (100)
89 3ns6_A Eukaryotic translation 99.8 1.6E-19 5.5E-24 140.1 6.1 83 100-182 5-94 (100)
90 2cpz_A CUG triplet repeat RNA- 99.8 9E-19 3.1E-23 139.9 10.7 85 98-182 22-106 (115)
91 2do4_A Squamous cell carcinoma 99.8 1.4E-18 4.7E-23 135.1 11.3 84 98-182 14-97 (100)
92 1x5t_A Splicing factor 3B subu 99.8 7.2E-19 2.4E-23 135.7 9.5 84 99-182 3-87 (96)
93 1p27_B RNA-binding protein 8A; 99.8 1E-18 3.6E-23 137.4 10.5 85 272-356 20-104 (106)
94 2cq0_A Eukaryotic translation 99.8 7.2E-19 2.4E-23 137.5 9.5 85 98-182 12-96 (103)
95 2dnm_A SRP46 splicing factor; 99.8 6.8E-19 2.3E-23 137.7 9.3 85 98-182 10-94 (103)
96 3p5t_L Cleavage and polyadenyl 99.8 1.5E-19 5E-24 137.5 5.3 82 276-357 2-85 (90)
97 2dgo_A Cytotoxic granule-assoc 99.8 1.6E-18 5.6E-23 138.4 11.6 85 98-182 12-96 (115)
98 2la6_A RNA-binding protein FUS 99.8 1.3E-18 4.4E-23 135.0 10.6 84 96-179 8-99 (99)
99 2dh8_A DAZ-associated protein 99.8 1.5E-18 5.1E-23 136.2 11.0 86 272-358 13-98 (105)
100 3r27_A HnRNP L, heterogeneous 99.8 1.6E-18 5.5E-23 131.8 10.7 79 272-356 18-98 (100)
101 2cqb_A Peptidyl-prolyl CIS-tra 99.8 7.6E-19 2.6E-23 137.2 9.2 85 98-182 9-93 (102)
102 2la6_A RNA-binding protein FUS 99.8 1.3E-18 4.5E-23 134.9 10.4 83 271-353 9-99 (99)
103 4a8x_A RNA-binding protein wit 99.8 1.2E-18 3.9E-23 132.2 9.8 82 275-356 4-86 (88)
104 2jrs_A RNA-binding protein 39; 99.8 1.2E-18 4E-23 137.1 10.1 85 272-356 23-107 (108)
105 2jrs_A RNA-binding protein 39; 99.8 1E-18 3.5E-23 137.4 9.8 84 98-181 23-106 (108)
106 1x4h_A RNA-binding protein 28; 99.8 1.7E-18 5.8E-23 137.5 11.1 86 97-182 11-102 (111)
107 2dhg_A TRNA selenocysteine ass 99.8 1.3E-18 4.6E-23 136.3 10.3 86 273-359 7-94 (104)
108 2cpf_A RNA binding motif prote 99.8 1E-18 3.5E-23 135.3 9.4 84 99-182 3-89 (98)
109 2do0_A HnRNP M, heterogeneous 99.8 4.7E-18 1.6E-22 135.6 13.5 85 273-358 13-97 (114)
110 3s7r_A Heterogeneous nuclear r 99.8 2.1E-18 7.1E-23 130.4 10.7 80 98-178 8-87 (87)
111 1x4a_A Splicing factor, argini 99.8 6.9E-18 2.4E-22 133.3 14.1 83 272-357 19-101 (109)
112 1p27_B RNA-binding protein 8A; 99.8 1.6E-18 5.5E-23 136.3 10.3 83 99-181 21-103 (106)
113 2m2b_A RNA-binding protein 10; 99.8 1.4E-18 4.7E-23 142.1 10.3 86 272-358 20-111 (131)
114 1s79_A Lupus LA protein; RRM, 99.8 1E-18 3.4E-23 135.7 8.8 80 99-180 9-88 (103)
115 1x4b_A Heterogeneous nuclear r 99.8 2E-18 6.7E-23 138.2 10.8 86 272-358 24-109 (116)
116 3ex7_B RNA-binding protein 8A; 99.8 2.1E-18 7E-23 140.3 11.0 87 272-358 19-105 (126)
117 2kxn_B Transformer-2 protein h 99.8 1.2E-18 4.2E-23 141.4 9.6 86 96-181 41-126 (129)
118 1sjq_A Polypyrimidine tract-bi 99.8 1.6E-18 5.5E-23 133.2 9.7 80 97-182 12-93 (105)
119 3ucg_A Polyadenylate-binding p 99.8 2.4E-18 8.2E-23 130.7 10.5 80 275-355 6-85 (89)
120 2cq4_A RNA binding motif prote 99.8 1.1E-18 3.9E-23 139.1 9.1 86 273-359 23-108 (114)
121 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.9E-18 6.4E-23 147.4 11.0 84 98-181 69-152 (165)
122 2dgp_A Bruno-like 4, RNA bindi 99.8 1.8E-18 6E-23 136.1 10.0 85 98-182 10-97 (106)
123 2kxn_B Transformer-2 protein h 99.8 1.6E-18 5.4E-23 140.8 10.0 85 272-356 43-127 (129)
124 2div_A TRNA selenocysteine ass 99.8 1.6E-18 5.6E-23 134.4 9.7 84 273-356 7-95 (99)
125 2cph_A RNA binding motif prote 99.8 3.1E-18 1.1E-22 135.0 11.3 86 98-183 12-99 (107)
126 2kt5_A RNA and export factor-b 99.8 1.4E-17 4.7E-22 134.9 15.3 87 270-357 30-116 (124)
127 2ywk_A Putative RNA-binding pr 99.8 2.5E-18 8.5E-23 132.3 10.3 82 98-180 13-94 (95)
128 2ywk_A Putative RNA-binding pr 99.8 3.2E-18 1.1E-22 131.7 10.9 82 272-354 13-94 (95)
129 2div_A TRNA selenocysteine ass 99.8 2.1E-18 7.1E-23 133.8 9.8 84 98-181 6-94 (99)
130 3ucg_A Polyadenylate-binding p 99.8 2.9E-18 9.8E-23 130.3 10.3 80 101-181 6-85 (89)
131 3n9u_C Cleavage and polyadenyl 99.8 2.2E-18 7.5E-23 144.6 10.5 82 100-181 54-137 (156)
132 1s79_A Lupus LA protein; RRM, 99.8 1.6E-18 5.6E-23 134.5 8.9 79 274-354 10-88 (103)
133 1x4d_A Matrin 3; structural ge 99.8 2.9E-18 1E-22 131.9 10.2 78 274-357 14-94 (102)
134 2cq1_A PTB-like protein L; RRM 99.8 1E-17 3.6E-22 129.0 13.2 82 272-359 12-95 (101)
135 2khc_A Testis-specific RNP-typ 99.8 3.3E-18 1.1E-22 137.4 10.8 82 272-353 37-118 (118)
136 1x4c_A Splicing factor, argini 99.8 1.3E-17 4.4E-22 131.4 13.8 79 274-359 14-97 (108)
137 2fy1_A RNA-binding motif prote 99.8 3.4E-18 1.2E-22 136.3 10.6 84 98-182 4-87 (116)
138 3ulh_A THO complex subunit 4; 99.8 4.5E-18 1.5E-22 134.0 11.2 82 97-179 25-106 (107)
139 2wbr_A GW182, gawky, LD47780P; 99.8 3.3E-18 1.1E-22 124.8 9.5 74 100-179 6-79 (89)
140 2cqp_A RNA-binding protein 12; 99.8 1.5E-18 5.1E-23 134.4 8.3 84 272-355 12-95 (98)
141 1oo0_B CG8781-PA, drosophila Y 99.8 2.9E-18 1E-22 135.8 10.1 84 98-181 23-106 (110)
142 2rs2_A Musashi-1, RNA-binding 99.8 5E-18 1.7E-22 133.8 11.3 85 273-358 23-107 (109)
143 3s7r_A Heterogeneous nuclear r 99.8 4.8E-18 1.7E-22 128.3 10.8 79 273-352 9-87 (87)
144 2dnh_A Bruno-like 5, RNA bindi 99.8 4.4E-18 1.5E-22 133.6 10.9 84 98-182 12-98 (105)
145 2dis_A Unnamed protein product 99.8 8E-18 2.7E-22 133.0 12.4 85 274-358 7-95 (109)
146 2dgv_A HnRNP M, heterogeneous 99.8 3.5E-18 1.2E-22 130.6 10.0 83 273-357 6-88 (92)
147 2cpi_A CCR4-NOT transcription 99.8 5.6E-18 1.9E-22 134.1 11.4 85 273-357 13-103 (111)
148 2dgu_A Heterogeneous nuclear r 99.8 1.8E-17 6E-22 129.5 14.1 80 273-360 9-88 (103)
149 4a8x_A RNA-binding protein wit 99.8 2.7E-18 9.3E-23 130.1 9.1 82 100-181 3-85 (88)
150 2cqg_A TDP-43, TAR DNA-binding 99.8 1.2E-17 4.3E-22 130.4 13.1 85 272-358 12-96 (103)
151 2cpe_A RNA-binding protein EWS 99.8 3.1E-18 1.1E-22 136.4 9.7 85 98-182 12-104 (113)
152 3r27_A HnRNP L, heterogeneous 99.8 5.4E-18 1.8E-22 128.9 10.5 79 97-181 17-97 (100)
153 2dh8_A DAZ-associated protein 99.8 2E-18 6.9E-23 135.5 8.5 84 98-182 13-96 (105)
154 2dhg_A TRNA selenocysteine ass 99.8 3.3E-18 1.1E-22 134.0 9.7 84 98-182 6-91 (104)
155 2cqd_A RNA-binding region cont 99.8 4.5E-18 1.5E-22 136.1 10.6 83 98-181 14-96 (116)
156 2ek1_A RNA-binding protein 12; 99.8 1.1E-18 3.6E-23 134.4 6.7 82 99-180 13-94 (95)
157 2dng_A Eukaryotic translation 99.8 3.7E-18 1.3E-22 133.4 9.8 83 98-182 12-94 (103)
158 1h2v_Z 20 kDa nuclear CAP bind 99.8 5.3E-18 1.8E-22 143.3 11.6 84 98-181 36-119 (156)
159 1x4e_A RNA binding motif, sing 99.8 6E-19 2E-23 132.7 5.1 82 98-179 2-83 (85)
160 2khc_A Testis-specific RNP-typ 99.7 2.1E-18 7.3E-23 138.5 8.6 82 98-179 37-118 (118)
161 2d9p_A Polyadenylate-binding p 99.7 3.7E-18 1.2E-22 133.5 9.7 83 98-182 12-94 (103)
162 3ulh_A THO complex subunit 4; 99.7 6.2E-18 2.1E-22 133.2 11.0 80 273-353 27-106 (107)
163 2mss_A Protein (musashi1); RNA 99.7 1.8E-18 6E-23 126.8 7.3 75 103-178 1-75 (75)
164 3n9u_C Cleavage and polyadenyl 99.7 3.6E-18 1.2E-22 143.3 10.1 82 275-356 55-138 (156)
165 1wex_A Hypothetical protein (r 99.7 1E-17 3.6E-22 129.9 11.9 82 272-359 12-95 (104)
166 2rs2_A Musashi-1, RNA-binding 99.7 4.1E-18 1.4E-22 134.3 9.7 85 96-181 20-104 (109)
167 1wi8_A EIF-4B, eukaryotic tran 99.7 4E-18 1.4E-22 133.5 9.3 82 99-182 13-95 (104)
168 2mss_A Protein (musashi1); RNA 99.7 1.9E-18 6.5E-23 126.6 7.0 75 277-352 1-75 (75)
169 1p1t_A Cleavage stimulation fa 99.7 1.7E-18 5.9E-23 135.7 7.1 85 274-358 7-91 (104)
170 1u6f_A Tcubp1, RNA-binding pro 99.7 5.9E-18 2E-22 140.1 10.7 85 98-182 39-123 (139)
171 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.1E-18 7.1E-23 133.9 7.4 83 272-356 16-99 (100)
172 2err_A Ataxin-2-binding protei 99.7 6.2E-18 2.1E-22 133.3 10.2 85 270-356 24-108 (109)
173 2dnq_A RNA-binding protein 4B; 99.7 1.3E-17 4.6E-22 126.7 11.8 78 273-358 6-83 (90)
174 3ex7_B RNA-binding protein 8A; 99.7 5.1E-18 1.7E-22 138.0 9.9 84 98-181 19-102 (126)
175 2hvz_A Splicing factor, argini 99.7 4.5E-18 1.5E-22 132.4 9.2 84 102-190 1-100 (101)
176 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.2E-17 4.2E-22 130.4 11.8 83 98-182 12-94 (103)
177 2dgx_A KIAA0430 protein; RRM d 99.7 9.9E-18 3.4E-22 129.0 10.9 81 99-182 7-91 (96)
178 2dgv_A HnRNP M, heterogeneous 99.7 7.8E-18 2.7E-22 128.7 10.3 83 98-182 5-87 (92)
179 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.9E-18 6.5E-23 127.3 6.6 76 102-178 1-76 (77)
180 1p1t_A Cleavage stimulation fa 99.7 4.1E-18 1.4E-22 133.5 8.7 82 101-182 8-89 (104)
181 2cqp_A RNA-binding protein 12; 99.7 2.3E-18 7.8E-23 133.4 7.1 84 98-181 12-95 (98)
182 2dgw_A Probable RNA-binding pr 99.7 1.1E-17 3.7E-22 127.6 10.8 80 274-356 9-88 (91)
183 2cq3_A RNA-binding protein 9; 99.7 1.3E-17 4.3E-22 130.4 11.4 83 98-182 12-94 (103)
184 2ek1_A RNA-binding protein 12; 99.7 1.7E-18 5.8E-23 133.3 6.4 81 274-354 14-94 (95)
185 2ad9_A Polypyrimidine tract-bi 99.7 6.2E-18 2.1E-22 133.4 9.7 82 272-359 28-111 (119)
186 1wg5_A Heterogeneous nuclear r 99.7 1.3E-17 4.5E-22 130.3 11.4 84 273-358 13-97 (104)
187 1wez_A HnRNP H', FTP-3, hetero 99.7 2.9E-18 9.8E-23 133.2 7.3 82 97-181 11-92 (102)
188 1x4d_A Matrin 3; structural ge 99.7 3.2E-18 1.1E-22 131.6 7.5 81 99-185 13-96 (102)
189 2dnn_A RNA-binding protein 12; 99.7 1.1E-17 3.6E-22 131.0 10.5 80 274-356 15-94 (109)
190 2fc9_A NCL protein; structure 99.7 2.2E-17 7.5E-22 128.5 12.4 82 272-357 12-93 (101)
191 1wez_A HnRNP H', FTP-3, hetero 99.7 3.8E-18 1.3E-22 132.5 7.9 81 273-356 13-93 (102)
192 2dgw_A Probable RNA-binding pr 99.7 1E-17 3.6E-22 127.6 10.2 81 98-181 7-87 (91)
193 1x4e_A RNA binding motif, sing 99.7 1.3E-18 4.5E-23 130.9 5.1 80 274-353 4-83 (85)
194 2cpy_A RNA-binding protein 12; 99.7 2.9E-18 9.8E-23 136.5 7.3 84 273-358 13-97 (114)
195 2kt5_A RNA and export factor-b 99.7 1.6E-17 5.4E-22 134.5 11.8 85 98-183 32-116 (124)
196 2nlw_A Eukaryotic translation 99.7 1.3E-17 4.4E-22 130.6 10.8 81 274-356 14-101 (105)
197 2jvr_A Nucleolar protein 3; RN 99.7 1.1E-17 3.8E-22 131.1 10.3 77 275-355 28-105 (111)
198 2do0_A HnRNP M, heterogeneous 99.7 1.5E-17 5.1E-22 132.6 11.2 82 98-180 12-93 (114)
199 2cqg_A TDP-43, TAR DNA-binding 99.7 1.7E-17 5.8E-22 129.7 11.3 83 98-182 12-94 (103)
200 1wg5_A Heterogeneous nuclear r 99.7 6.5E-18 2.2E-22 132.0 8.8 83 98-182 12-95 (104)
201 2hgl_A HNRPF protein, heteroge 99.7 2.9E-18 1E-22 139.7 7.1 82 98-181 41-125 (136)
202 1uaw_A Mouse-musashi-1; RNP-ty 99.7 3.3E-18 1.1E-22 126.1 6.7 76 276-352 1-76 (77)
203 2cpy_A RNA-binding protein 12; 99.7 3.1E-18 1.1E-22 136.3 7.1 82 98-181 12-94 (114)
204 2cq4_A RNA binding motif prote 99.7 4.9E-18 1.7E-22 135.4 8.2 80 101-181 25-104 (114)
205 2dgt_A RNA-binding protein 30; 99.7 4.2E-17 1.4E-21 124.5 13.1 79 272-358 7-85 (92)
206 2m2b_A RNA-binding protein 10; 99.7 3.8E-18 1.3E-22 139.5 7.7 83 100-183 22-110 (131)
207 2jwn_A Embryonic polyadenylate 99.7 1.1E-17 3.8E-22 135.5 10.2 82 274-356 35-116 (124)
208 2j76_E EIF-4B, EIF4B, eukaryot 99.7 3.3E-18 1.1E-22 132.7 6.7 82 98-181 16-98 (100)
209 1x4g_A Nucleolysin TIAR; struc 99.7 3.2E-17 1.1E-21 129.5 12.4 80 274-359 24-103 (109)
210 2dis_A Unnamed protein product 99.7 1.1E-17 3.8E-22 132.2 9.9 86 98-183 5-94 (109)
211 1x4a_A Splicing factor, argini 99.7 1.9E-17 6.7E-22 130.7 11.2 82 98-182 19-100 (109)
212 2fc8_A NCL protein; structure 99.7 2E-17 6.8E-22 129.0 11.0 84 271-357 11-94 (102)
213 1why_A Hypothetical protein ri 99.7 2.8E-17 9.7E-22 126.8 11.5 78 273-356 15-94 (97)
214 2ki2_A SS-DNA binding protein 99.7 2.2E-18 7.4E-23 131.2 5.1 81 276-357 2-82 (90)
215 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 3.3E-17 1.1E-21 135.9 12.7 83 270-352 58-140 (140)
216 2db1_A Heterogeneous nuclear r 99.7 4.8E-18 1.6E-22 135.9 7.2 82 98-181 14-98 (118)
217 2dnn_A RNA-binding protein 12; 99.7 7.6E-18 2.6E-22 131.8 8.1 79 101-182 16-94 (109)
218 2ki2_A SS-DNA binding protein 99.7 2.3E-18 7.8E-23 131.0 4.9 80 102-182 2-81 (90)
219 2cpd_A Apobec-1 stimulating pr 99.7 9.2E-17 3.1E-21 124.4 14.0 78 272-357 12-91 (99)
220 2cpi_A CCR4-NOT transcription 99.7 9.3E-18 3.2E-22 132.9 8.5 86 99-184 13-104 (111)
221 1wf1_A RNA-binding protein RAL 99.7 5.1E-17 1.7E-21 128.5 12.6 95 254-357 7-102 (110)
222 2a3j_A U1 small nuclear ribonu 99.7 2.4E-17 8.4E-22 132.6 10.9 83 273-358 27-113 (127)
223 1x4b_A Heterogeneous nuclear r 99.7 1.2E-17 4E-22 133.6 9.0 81 101-182 27-107 (116)
224 2ad9_A Polypyrimidine tract-bi 99.7 1.3E-17 4.3E-22 131.7 8.9 80 97-182 27-108 (119)
225 2hvz_A Splicing factor, argini 99.7 2.6E-17 8.9E-22 128.1 10.6 78 276-358 1-78 (101)
226 2cpj_A Non-POU domain-containi 99.7 1.6E-17 5.6E-22 128.7 9.3 85 98-188 12-96 (99)
227 1iqt_A AUF1, heterogeneous nuc 99.7 7.3E-18 2.5E-22 123.5 6.7 75 103-178 1-75 (75)
228 2lea_A Serine/arginine-rich sp 99.7 5.5E-18 1.9E-22 138.9 6.6 83 99-181 45-127 (135)
229 2jvr_A Nucleolar protein 3; RN 99.7 1.8E-17 6E-22 129.9 9.2 82 96-181 23-105 (111)
230 1x5o_A RNA binding motif, sing 99.7 3.3E-17 1.1E-21 130.6 11.0 82 273-355 23-112 (114)
231 1x4f_A Matrin 3; structural ge 99.7 1.4E-17 4.8E-22 129.9 8.5 82 272-359 22-106 (112)
232 2err_A Ataxin-2-binding protei 99.7 1.7E-17 6E-22 130.7 9.1 83 97-181 25-107 (109)
233 2dnp_A RNA-binding protein 14; 99.7 7.1E-17 2.4E-21 122.7 12.2 77 273-357 7-83 (90)
234 2cpx_A Hypothetical protein FL 99.7 6.6E-18 2.2E-22 135.0 6.7 84 272-359 22-109 (115)
235 1fj7_A Nucleolin RBD1, protein 99.7 3.9E-18 1.3E-22 132.8 5.2 83 274-358 16-98 (101)
236 2krb_A Eukaryotic translation 99.7 6.7E-18 2.3E-22 125.6 6.2 73 101-175 1-80 (81)
237 2jvo_A Nucleolar protein 3; nu 99.7 2.9E-17 9.8E-22 129.0 10.1 80 270-357 26-105 (108)
238 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.4E-17 8.2E-22 136.7 10.2 81 98-178 60-140 (140)
239 2hgl_A HNRPF protein, heteroge 99.7 7.2E-18 2.5E-22 137.3 6.7 81 274-356 43-126 (136)
240 2cpj_A Non-POU domain-containi 99.7 5E-17 1.7E-21 125.9 11.2 80 272-357 12-91 (99)
241 2cq1_A PTB-like protein L; RRM 99.7 3.1E-17 1.1E-21 126.4 9.9 77 99-181 13-91 (101)
242 2jwn_A Embryonic polyadenylate 99.7 2.1E-17 7.2E-22 133.9 9.5 80 101-181 36-115 (124)
243 2nlw_A Eukaryotic translation 99.7 1.7E-17 5.9E-22 129.9 8.6 80 100-181 14-100 (105)
244 2kn4_A Immunoglobulin G-bindin 99.7 2.6E-17 9.1E-22 139.4 10.3 83 99-181 68-150 (158)
245 1x4f_A Matrin 3; structural ge 99.7 9.2E-18 3.1E-22 130.9 6.8 84 98-187 22-108 (112)
246 2db1_A Heterogeneous nuclear r 99.7 1.1E-17 3.8E-22 133.8 7.3 81 274-356 16-99 (118)
247 2xnq_A Nuclear polyadenylated 99.7 7.6E-17 2.6E-21 124.1 11.6 78 271-356 18-96 (97)
248 1iqt_A AUF1, heterogeneous nuc 99.7 8.9E-18 3E-22 123.0 6.1 75 277-352 1-75 (75)
249 1x5o_A RNA binding motif, sing 99.7 3.5E-17 1.2E-21 130.5 9.9 82 99-181 23-112 (114)
250 2hgn_A Heterogeneous nuclear r 99.7 4E-18 1.4E-22 139.3 4.5 80 274-356 45-124 (139)
251 2dha_A FLJ20171 protein; RRM d 99.7 1E-17 3.4E-22 133.9 6.5 80 99-180 21-104 (123)
252 2a3j_A U1 small nuclear ribonu 99.7 4.6E-17 1.6E-21 131.0 10.4 83 98-183 26-112 (127)
253 1wel_A RNA-binding protein 12; 99.7 4.2E-18 1.4E-22 137.8 4.3 83 98-181 22-104 (124)
254 2la4_A Nuclear and cytoplasmic 99.7 3.1E-17 1.1E-21 127.6 9.0 75 275-355 27-101 (101)
255 1wex_A Hypothetical protein (r 99.7 3.8E-17 1.3E-21 126.7 9.4 79 98-182 12-92 (104)
256 2dnq_A RNA-binding protein 4B; 99.7 7.1E-17 2.4E-21 122.6 10.7 77 98-182 5-81 (90)
257 2lmi_A GRSF-1, G-rich sequence 99.7 6.6E-18 2.2E-22 132.8 5.0 82 98-181 8-92 (107)
258 2krb_A Eukaryotic translation 99.7 1.2E-17 4.1E-22 124.2 6.2 73 276-350 2-81 (81)
259 2e5j_A Methenyltetrahydrofolat 99.7 4.1E-17 1.4E-21 125.8 9.4 79 273-356 17-95 (97)
260 2j8a_A Histone-lysine N-methyl 99.7 2.4E-17 8.3E-22 128.4 7.8 80 102-181 3-96 (136)
261 2lcw_A RNA-binding protein FUS 99.5 1E-18 3.4E-23 139.8 0.0 84 274-357 6-97 (116)
262 2cqh_A IGF-II mRNA-binding pro 99.7 4.5E-17 1.5E-21 124.7 9.1 78 274-358 7-86 (93)
263 2ytc_A PRE-mRNA-splicing facto 99.7 6.9E-17 2.4E-21 121.4 10.0 75 273-353 10-85 (85)
264 1wg1_A KIAA1579 protein, homol 99.7 3.8E-17 1.3E-21 123.5 8.6 84 99-189 3-86 (88)
265 2la4_A Nuclear and cytoplasmic 99.7 6.7E-17 2.3E-21 125.7 10.2 79 96-180 22-100 (101)
266 1why_A Hypothetical protein ri 99.7 8.7E-17 3E-21 124.1 10.6 79 98-182 14-94 (97)
267 1x4c_A Splicing factor, argini 99.7 9.2E-17 3.1E-21 126.5 10.9 77 99-182 13-94 (108)
268 2lmi_A GRSF-1, G-rich sequence 99.7 1.2E-17 4.1E-22 131.3 5.8 82 273-356 9-93 (107)
269 2hgm_A HNRPF protein, heteroge 99.7 1.7E-17 5.9E-22 132.8 6.6 80 98-180 39-120 (126)
270 1x4g_A Nucleolysin TIAR; struc 99.7 9.3E-17 3.2E-21 126.7 10.6 81 97-183 21-101 (109)
271 1fjc_A Nucleolin RBD2, protein 99.7 5.3E-17 1.8E-21 125.1 8.9 82 272-358 13-94 (96)
272 1nu4_A U1A RNA binding domain; 99.7 4.5E-17 1.5E-21 125.8 8.5 82 273-357 6-91 (97)
273 2kvi_A Nuclear polyadenylated 99.7 3.4E-17 1.2E-21 126.0 7.8 78 273-358 8-86 (96)
274 2fc9_A NCL protein; structure 99.7 5E-17 1.7E-21 126.5 8.8 81 98-182 12-92 (101)
275 1fj7_A Nucleolin RBD1, protein 99.7 6.4E-18 2.2E-22 131.6 3.5 81 99-181 15-95 (101)
276 1wel_A RNA-binding protein 12; 99.7 9.3E-18 3.2E-22 135.8 4.6 83 273-356 23-105 (124)
277 2cq2_A Hypothetical protein LO 99.7 1.4E-16 4.7E-21 124.3 10.7 79 273-357 23-108 (114)
278 1whx_A Hypothetical protein ri 99.7 9.5E-17 3.2E-21 126.8 9.9 77 275-357 10-86 (111)
279 3lqv_A PRE-mRNA branch site pr 99.7 9.3E-17 3.2E-21 128.2 9.9 82 274-358 7-88 (115)
280 2hgm_A HNRPF protein, heteroge 99.7 2.9E-17 1E-21 131.4 6.9 80 274-356 41-122 (126)
281 2xnq_A Nuclear polyadenylated 99.7 1.7E-16 6E-21 122.0 11.0 79 95-181 16-95 (97)
282 2hgn_A Heterogeneous nuclear r 99.7 1.1E-17 3.8E-22 136.6 4.5 81 98-181 43-123 (139)
283 2fc8_A NCL protein; structure 99.7 7.3E-17 2.5E-21 125.8 9.0 82 98-182 12-93 (102)
284 2diu_A KIAA0430 protein; struc 99.7 1.5E-16 5.1E-21 117.1 9.9 80 98-187 6-90 (96)
285 2f3j_A RNA and export factor b 99.7 9.9E-17 3.4E-21 137.6 10.4 85 98-183 85-169 (177)
286 2ytc_A PRE-mRNA-splicing facto 99.7 1.5E-16 5E-21 119.5 9.7 76 98-179 9-85 (85)
287 2e5j_A Methenyltetrahydrofolat 99.7 1.2E-16 4E-21 123.3 9.3 80 98-182 16-95 (97)
288 2cpx_A Hypothetical protein FL 99.7 2E-17 7E-22 132.1 5.0 85 98-182 22-106 (115)
289 3zzy_A Polypyrimidine tract-bi 99.7 2.2E-16 7.5E-21 126.1 10.9 80 275-359 28-110 (130)
290 2dgt_A RNA-binding protein 30; 99.7 2.3E-16 7.7E-21 120.4 10.6 79 97-183 6-84 (92)
291 2dnp_A RNA-binding protein 14; 99.7 2.3E-16 7.8E-21 119.8 10.4 77 98-182 6-82 (90)
292 2lcw_A RNA-binding protein FUS 99.5 3.2E-18 1.1E-22 136.9 0.0 84 99-182 5-96 (116)
293 2xs2_A Deleted in azoospermia- 99.7 7.3E-17 2.5E-21 125.8 7.6 82 273-357 7-88 (102)
294 1nu4_A U1A RNA binding domain; 99.7 8E-17 2.7E-21 124.3 7.7 83 98-183 5-91 (97)
295 2e5g_A U6 snRNA-specific termi 99.7 2.5E-16 8.6E-21 120.6 10.4 78 274-357 7-84 (94)
296 2xs2_A Deleted in azoospermia- 99.7 3.2E-17 1.1E-21 127.8 5.4 80 100-182 8-87 (102)
297 2e44_A Insulin-like growth fac 99.7 2.6E-16 9E-21 121.1 10.4 79 274-356 14-93 (96)
298 2f3j_A RNA and export factor b 99.7 1.6E-16 5.4E-21 136.4 10.0 86 271-357 84-169 (177)
299 2dha_A FLJ20171 protein; RRM d 99.7 3.8E-17 1.3E-21 130.6 5.7 80 276-357 24-107 (123)
300 3beg_B Splicing factor, argini 99.7 1.7E-16 5.7E-21 126.4 9.4 75 275-356 16-95 (115)
301 2j8a_A Histone-lysine N-methyl 99.7 9.7E-17 3.3E-21 125.0 7.8 79 276-354 3-95 (136)
302 2jvo_A Nucleolar protein 3; nu 99.7 2.4E-16 8.1E-21 123.8 10.0 78 97-182 27-104 (108)
303 2dgu_A Heterogeneous nuclear r 99.7 3.3E-16 1.1E-20 122.2 10.6 76 99-182 9-84 (103)
304 1x5p_A Negative elongation fac 99.7 1.2E-15 4.2E-20 117.5 13.7 78 273-358 13-90 (97)
305 1sjr_A Polypyrimidine tract-bi 99.7 3.9E-16 1.3E-20 129.4 11.5 80 275-358 46-127 (164)
306 2diu_A KIAA0430 protein; struc 99.7 2.9E-16 9.8E-21 115.6 9.3 74 275-358 8-87 (96)
307 1whx_A Hypothetical protein ri 99.7 1.3E-16 4.5E-21 126.0 7.9 75 100-180 9-83 (111)
308 4f02_A Polyadenylate-binding p 99.7 3.2E-16 1.1E-20 139.7 11.2 84 273-356 13-96 (213)
309 3d2w_A TAR DNA-binding protein 99.7 5.5E-16 1.9E-20 117.0 10.5 75 274-357 10-86 (89)
310 2kvi_A Nuclear polyadenylated 99.7 2E-16 7E-21 121.6 8.2 76 98-181 7-83 (96)
311 1wg1_A KIAA1579 protein, homol 99.7 2.6E-16 8.8E-21 118.9 8.3 75 275-356 5-79 (88)
312 2e44_A Insulin-like growth fac 99.7 3.2E-16 1.1E-20 120.7 8.8 79 99-181 13-92 (96)
313 2cpd_A Apobec-1 stimulating pr 99.7 7.9E-16 2.7E-20 119.1 11.0 76 99-182 13-90 (99)
314 2i2y_A Fusion protein consists 99.6 4.2E-16 1.4E-20 130.7 10.1 80 98-182 70-149 (150)
315 1fjc_A Nucleolin RBD2, protein 99.6 1.1E-16 3.7E-21 123.3 6.0 77 100-181 15-91 (96)
316 2e5i_A Heterogeneous nuclear r 99.6 8.4E-16 2.9E-20 122.3 11.1 78 275-358 25-105 (124)
317 2dnl_A Cytoplasmic polyadenyla 99.6 3.9E-16 1.3E-20 124.1 9.2 78 99-179 6-86 (114)
318 3egn_A RNA-binding protein 40; 99.6 6.9E-17 2.4E-21 134.3 5.1 86 273-358 43-133 (143)
319 2pe8_A Splicing factor 45; RRM 99.6 7.1E-16 2.4E-20 119.8 10.4 83 274-356 7-95 (105)
320 2cqh_A IGF-II mRNA-binding pro 99.6 2.8E-16 9.6E-21 120.2 7.8 78 98-182 5-84 (93)
321 2e5g_A U6 snRNA-specific termi 99.6 5.3E-16 1.8E-20 118.8 8.8 77 99-181 6-82 (94)
322 1wf1_A RNA-binding protein RAL 99.6 6.2E-16 2.1E-20 122.2 9.4 74 100-181 26-100 (110)
323 1wf0_A TDP-43, TAR DNA-binding 99.6 4.1E-16 1.4E-20 117.9 8.0 77 275-358 5-81 (88)
324 2cq2_A Hypothetical protein LO 99.6 6E-16 2.1E-20 120.6 8.8 77 97-179 21-104 (114)
325 2voo_A Lupus LA protein; RNA-b 99.6 1.8E-15 6.2E-20 131.8 12.8 120 235-356 64-188 (193)
326 1b7f_A Protein (SXL-lethal pro 99.6 9.7E-16 3.3E-20 131.3 10.6 83 275-357 3-85 (168)
327 1fxl_A Paraneoplastic encephal 99.6 1.2E-15 4.2E-20 130.4 11.2 83 275-357 2-84 (167)
328 3egn_A RNA-binding protein 40; 99.6 6E-17 2E-21 134.7 2.8 81 98-181 42-130 (143)
329 3md3_A Nuclear and cytoplasmic 99.6 1.4E-15 5E-20 129.8 11.4 82 98-179 84-165 (166)
330 1sjr_A Polypyrimidine tract-bi 99.6 1.4E-15 4.7E-20 126.1 10.6 79 100-182 45-125 (164)
331 3zzy_A Polypyrimidine tract-bi 99.6 1.5E-15 5.1E-20 121.2 9.9 79 99-182 26-107 (130)
332 2pe8_A Splicing factor 45; RRM 99.6 2.1E-15 7.1E-20 117.1 10.5 82 99-180 6-93 (105)
333 3pgw_S U1-70K; protein-RNA com 99.6 1.1E-15 3.8E-20 149.9 11.1 82 100-181 101-182 (437)
334 3beg_B Splicing factor, argini 99.6 7.3E-16 2.5E-20 122.6 8.0 74 100-180 15-93 (115)
335 3tyt_A Heterogeneous nuclear r 99.6 1.8E-15 6E-20 133.4 11.3 77 275-356 4-81 (205)
336 2dnl_A Cytoplasmic polyadenyla 99.6 2.1E-15 7.2E-20 119.8 10.5 80 274-356 7-89 (114)
337 2g4b_A Splicing factor U2AF 65 99.6 1.7E-15 5.7E-20 130.3 10.6 81 99-179 92-172 (172)
338 3d2w_A TAR DNA-binding protein 99.6 1.6E-15 5.4E-20 114.5 9.1 75 98-181 8-84 (89)
339 2hzc_A Splicing factor U2AF 65 99.6 2.6E-15 9E-20 113.2 10.2 71 274-351 5-86 (87)
340 1x5p_A Negative elongation fac 99.6 3.5E-15 1.2E-19 114.9 10.9 77 98-182 12-88 (97)
341 2hzc_A Splicing factor U2AF 65 99.6 1.9E-15 6.6E-20 114.0 8.6 71 100-177 5-86 (87)
342 2qfj_A FBP-interacting repress 99.6 3.1E-15 1.1E-19 133.8 11.3 84 99-182 123-206 (216)
343 1l3k_A Heterogeneous nuclear r 99.6 3.4E-15 1.2E-19 131.3 11.1 85 272-357 10-94 (196)
344 2yh0_A Splicing factor U2AF 65 99.6 3.5E-15 1.2E-19 131.5 10.8 84 98-181 111-194 (198)
345 2bz2_A Negative elongation fac 99.6 2.6E-15 8.9E-20 120.2 8.8 78 273-358 37-114 (121)
346 2cjk_A Nuclear polyadenylated 99.6 1.5E-15 5E-20 130.0 7.5 80 101-181 87-166 (167)
347 2e5i_A Heterogeneous nuclear r 99.6 6.1E-15 2.1E-19 117.3 10.3 75 102-182 26-103 (124)
348 3v4m_A Splicing factor U2AF 65 99.6 6.4E-15 2.2E-19 114.4 9.7 82 274-355 4-97 (105)
349 3pgw_A U1-A; protein-RNA compl 99.6 6.2E-14 2.1E-18 130.7 18.0 81 273-356 7-91 (282)
350 2dit_A HIV TAT specific factor 99.6 2.4E-14 8.2E-19 113.2 12.2 83 272-358 12-105 (112)
351 1wf0_A TDP-43, TAR DNA-binding 99.6 1.9E-15 6.4E-20 114.2 5.3 77 99-182 3-79 (88)
352 3u1l_A PRE-mRNA-splicing facto 99.6 8.4E-15 2.9E-19 130.1 9.5 81 271-357 130-231 (240)
353 2bz2_A Negative elongation fac 99.6 1.1E-14 3.7E-19 116.6 9.2 77 98-182 36-112 (121)
354 2voo_A Lupus LA protein; RNA-b 99.6 1.3E-14 4.4E-19 126.4 10.0 78 101-180 109-186 (193)
355 3nmr_A Cugbp ELAV-like family 99.5 2E-14 6.8E-19 123.9 10.3 79 100-179 94-175 (175)
356 2dit_A HIV TAT specific factor 99.5 4.5E-14 1.5E-18 111.6 10.4 85 96-184 10-105 (112)
357 2adc_A Polypyrimidine tract-bi 99.5 3.6E-14 1.2E-18 127.9 10.0 79 273-356 32-111 (229)
358 3ue2_A Poly(U)-binding-splicin 99.5 3.1E-14 1.1E-18 112.6 8.0 82 274-355 19-109 (118)
359 3v4m_A Splicing factor U2AF 65 99.5 5.7E-14 1.9E-18 109.1 9.2 81 100-180 4-96 (105)
360 3u1l_A PRE-mRNA-splicing facto 99.5 3.7E-14 1.3E-18 125.9 9.1 79 98-182 131-230 (240)
361 3sde_A Paraspeckle component 1 99.5 9.3E-14 3.2E-18 127.8 11.6 80 270-355 17-96 (261)
362 1fje_B Nucleolin RBD12, protei 99.5 3.6E-14 1.2E-18 122.3 8.2 77 100-181 98-174 (175)
363 1jmt_A Splicing factor U2AF 35 99.5 1.9E-14 6.5E-19 111.6 5.1 72 280-352 20-103 (104)
364 1qm9_A Polypyrimidine tract-bi 99.5 5.2E-14 1.8E-18 123.9 8.1 76 276-356 4-80 (198)
365 3ue2_A Poly(U)-binding-splicin 99.5 1.3E-13 4.5E-18 109.0 8.2 81 100-180 19-108 (118)
366 2d9o_A DNAJ (HSP40) homolog, s 99.5 6.3E-13 2.1E-17 101.6 11.6 67 285-358 27-93 (100)
367 1jmt_A Splicing factor U2AF 35 99.5 4.6E-14 1.6E-18 109.4 4.9 72 106-178 20-103 (104)
368 3s6e_A RNA-binding protein 39; 99.4 8.8E-13 3E-17 103.5 10.1 80 273-356 5-94 (114)
369 3tht_A Alkylated DNA repair pr 99.3 3E-12 1E-16 120.0 10.2 76 272-353 15-97 (345)
370 2d9o_A DNAJ (HSP40) homolog, s 99.3 1E-11 3.5E-16 94.9 10.8 75 101-182 10-91 (100)
371 3s6e_A RNA-binding protein 39; 99.3 1.1E-11 3.8E-16 97.2 9.4 79 98-180 4-92 (114)
372 3tht_A Alkylated DNA repair pr 99.3 7.3E-12 2.5E-16 117.4 8.7 77 97-179 14-97 (345)
373 2dnr_A Synaptojanin-1; RRM dom 99.2 3.9E-11 1.3E-15 87.5 9.3 73 274-355 6-86 (91)
374 1owx_A Lupus LA protein, SS-B, 99.2 8.8E-11 3E-15 91.9 8.9 74 274-353 17-94 (121)
375 1owx_A Lupus LA protein, SS-B, 99.2 6.9E-11 2.4E-15 92.5 7.7 75 99-179 16-94 (121)
376 2dnr_A Synaptojanin-1; RRM dom 99.1 1.3E-10 4.4E-15 84.8 8.1 75 98-181 4-86 (91)
377 1ufw_A Synaptojanin 2; RNP dom 99.1 1.9E-10 6.4E-15 84.2 6.5 73 273-354 13-94 (95)
378 1ufw_A Synaptojanin 2; RNP dom 99.0 7.2E-10 2.5E-14 81.2 6.2 75 96-179 10-93 (95)
379 3dxb_A Thioredoxin N-terminall 98.9 1E-08 3.4E-13 91.6 11.7 80 276-355 125-213 (222)
380 3dxb_A Thioredoxin N-terminall 98.8 1.2E-08 4.2E-13 91.0 8.4 81 100-180 123-212 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.7 1E-07 3.4E-12 71.1 9.0 71 276-352 22-97 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.5 1.1E-06 3.7E-11 65.5 10.4 71 100-176 20-95 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.3 4.5E-06 1.5E-10 61.9 10.2 88 99-195 6-100 (104)
384 1wey_A Calcipressin 1; structu 98.0 3.2E-05 1.1E-09 57.7 9.4 75 276-356 6-85 (104)
385 2dhx_A Poly (ADP-ribose) polym 97.8 0.00019 6.5E-09 53.2 9.9 76 275-359 8-88 (104)
386 1wey_A Calcipressin 1; structu 97.7 0.00013 4.4E-09 54.4 7.2 74 101-180 5-83 (104)
387 1uw4_A UPF3X; nonsense mediate 97.7 0.00017 6E-09 52.9 7.6 69 102-170 2-72 (91)
388 1uw4_A UPF3X; nonsense mediate 97.6 0.00059 2E-08 50.1 9.4 78 276-353 2-86 (91)
389 1whv_A Poly(A)-specific ribonu 97.2 0.00098 3.3E-08 48.7 7.1 57 99-164 14-70 (100)
390 1wwh_A Nucleoporin 35, nucleop 97.2 0.0027 9.4E-08 48.7 9.9 72 274-353 23-95 (119)
391 1whv_A Poly(A)-specific ribonu 97.2 0.00081 2.8E-08 49.2 6.6 55 275-338 16-70 (100)
392 3ctr_A Poly(A)-specific ribonu 97.1 0.0008 2.7E-08 49.4 5.5 55 275-338 6-60 (101)
393 1wwh_A Nucleoporin 35, nucleop 97.1 0.0026 8.7E-08 48.9 8.5 72 100-179 23-95 (119)
394 2l08_A Regulator of nonsense t 96.9 0.0025 8.7E-08 46.9 6.9 78 275-352 9-93 (97)
395 3ctr_A Poly(A)-specific ribonu 96.8 0.0021 7.3E-08 47.1 5.3 53 103-164 8-60 (101)
396 2l08_A Regulator of nonsense t 96.7 0.0015 5.1E-08 48.1 4.0 70 100-169 8-79 (97)
397 3p3d_A Nucleoporin 53; structu 96.2 0.005 1.7E-07 48.0 4.7 78 101-180 7-98 (132)
398 3p3d_A Nucleoporin 53; structu 96.0 0.013 4.5E-07 45.6 6.1 78 276-355 8-99 (132)
399 3pq1_A Poly(A) RNA polymerase; 95.9 0.0044 1.5E-07 60.1 3.5 55 101-161 53-107 (464)
400 3pq1_A Poly(A) RNA polymerase; 95.7 0.0055 1.9E-07 59.4 3.5 55 276-336 54-108 (464)
401 3d45_A Poly(A)-specific ribonu 89.3 1.2 4E-05 44.2 8.8 56 274-338 439-494 (507)
402 3d45_A Poly(A)-specific ribonu 86.3 1.6 5.6E-05 43.1 7.7 56 101-165 440-495 (507)
403 4eyt_A Telomerase associated p 80.2 13 0.00045 26.2 8.1 56 275-338 12-67 (129)
404 2pk2_A Cyclin-T1, protein TAT; 80.0 0.35 1.2E-05 45.5 0.0 13 286-298 228-240 (358)
405 2g0c_A ATP-dependent RNA helic 66.5 9.9 0.00034 26.2 4.9 59 286-353 12-75 (76)
406 4eyt_A Telomerase associated p 61.6 39 0.0013 23.8 8.7 57 100-164 11-67 (129)
407 2g0c_A ATP-dependent RNA helic 55.0 43 0.0015 22.8 6.6 68 103-179 2-75 (76)
408 4e8u_A Putative uncharacterize 44.4 27 0.00091 28.5 4.4 49 276-327 13-72 (172)
409 2z5n_B Heterogeneous nuclear r 43.6 16 0.00053 19.4 2.0 11 469-479 14-24 (26)
410 3j21_T 50S ribosomal protein L 41.0 69 0.0023 22.7 5.6 56 278-336 25-82 (86)
411 3fry_A Probable copper-exporti 33.7 1E+02 0.0035 20.3 5.9 54 276-336 7-60 (73)
412 4e8u_A Putative uncharacterize 33.0 75 0.0026 25.9 5.4 51 102-155 13-74 (172)
413 2ot8_C HnRNP M, heterogeneous 31.8 15 0.00051 19.8 0.7 7 473-479 18-24 (30)
414 3l9o_A ATP-dependent RNA helic 31.5 10 0.00034 41.6 0.0 19 144-162 228-246 (1108)
415 2i9x_A Putative septation prot 30.7 57 0.0019 23.2 3.8 26 127-152 5-30 (87)
416 2ia9_A Putative septation prot 27.3 68 0.0023 23.5 3.8 26 127-152 5-30 (100)
417 3l9o_A ATP-dependent RNA helic 26.8 13 0.00046 40.6 0.0 9 317-325 587-595 (1108)
418 2i9z_A Putative septation prot 26.3 73 0.0025 23.5 3.9 26 127-152 5-30 (105)
419 1vq8_S 50S ribosomal protein L 25.4 1.1E+02 0.0037 21.6 4.5 53 278-333 24-78 (85)
420 3u5e_X 60S ribosomal protein L 24.0 1.6E+02 0.0054 23.1 5.6 55 278-335 81-137 (142)
421 2f06_A Conserved hypothetical 23.9 2.5E+02 0.0085 21.6 10.0 113 196-342 21-135 (144)
422 3tj1_A RNA polymerase I-specif 23.0 18 0.00062 36.5 0.1 11 140-150 398-408 (649)
423 4a17_R RPL23A, 60S ribosomal p 22.7 1.6E+02 0.0055 23.3 5.4 54 279-335 90-145 (150)
424 3lpe_A Putative transcription 22.5 2.1E+02 0.0073 20.3 6.4 33 302-339 40-72 (92)
425 2zqe_A MUTS2 protein; alpha/be 21.7 1.9E+02 0.0066 20.1 5.3 48 276-325 35-82 (83)
426 2kjw_A TS9, 30S ribosomal prot 21.2 1.5E+02 0.0052 21.4 4.7 60 144-205 6-68 (96)
427 4aco_A Centromere DNA-binding 21.1 20 0.00069 36.8 0.0 10 328-337 912-921 (956)
428 3ts2_A Protein LIN-28 homolog 20.5 20 0.00068 28.6 -0.2 28 290-325 2-29 (148)
429 2i9x_A Putative septation prot 20.3 89 0.003 22.2 3.2 26 301-326 5-30 (87)
No 1
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=6.4e-45 Score=343.67 Aligned_cols=250 Identities=18% Similarity=0.328 Sum_probs=215.2
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Q 011693 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (479)
Q Consensus 96 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v 175 (479)
..++..++|||+|||+++|+++|+++|+.||.|.+|+|++++.+ ++|||||+|.+.++|.+|+ .+++..|.|+.|.|
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v 112 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAI-TKTHKVVGQNEIIV 112 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHH-TTTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEE
Confidence 34556899999999999999999999999999999999998743 5899999999999999999 59999999999999
Q ss_pred eecccccccccCCCCCCCCHHHHHHHHHhhC-CCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCC
Q 011693 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVG-PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGT 254 (479)
Q Consensus 176 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~ 254 (479)
.++ ...+|||+|||..+++++|.++|+.|| . |..+.++.+ ..+.+++||||+|.+.++|.+|+..|++.. +.+
T Consensus 113 ~~~-~~~~l~v~nlp~~~t~~~l~~~f~~~G~~-i~~v~i~~~--~~~~~~g~afV~f~~~~~a~~A~~~l~g~~--~~g 186 (292)
T 2ghp_A 113 SHL-TECTLWMTNFPPSYTQRNIRDLLQDINVV-ALSIRLPSL--RFNTSRRFAYIDVTSKEDARYCVEKLNGLK--IEG 186 (292)
T ss_dssp EEC-CSCEEEEECCCTTCCHHHHHHHHHHTTCC-CCEEECC---------CCEEEEECSSHHHHHHHHHHHTTCE--ETT
T ss_pred EEC-CCCEEEEECCCCCCCHHHHHHHHHHhCCC-eEEEEEEeC--CCCCcceEEEEEECCHHHHHHHHHHhCCCE--eCC
Confidence 987 467899999999999999999999999 7 999999887 337899999999999999999999999764 577
Q ss_pred CCCeeeeCCCCCCCC---CCCccccEEEEcCCCCC-CCHHHHHHHHhhcCCeEEEEecCCCC-CCCcccEEEEEeCChHH
Q 011693 255 NAPTVSWADPRNVDS---SGASQVKAVYVKNLPRN-VTQDQLKKLFEHHGRITKVVVPPAKP-GQEKNRIGFVHFAERSS 329 (479)
Q Consensus 255 ~~~~~~~~~~~~~~~---~~~~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~v~~v~i~~~~~-~~~~~G~afV~F~~~~~ 329 (479)
+.+.+.|+.+..... ......++|||+|||.+ +|+++|+++|++||.|.+|+|+.+.. ++.++|||||+|.+.++
T Consensus 187 ~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~ 266 (292)
T 2ghp_A 187 YTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDS 266 (292)
T ss_dssp EECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHH
T ss_pred cEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHH
Confidence 999999988765443 23445689999999999 99999999999999999999999887 46779999999999999
Q ss_pred HHHHHHHhCCceecCeEEEEEeccCC
Q 011693 330 AMKALKNTEKYELDGQALECSLAKPQ 355 (479)
Q Consensus 330 A~~A~~~l~~~~~~g~~l~v~~a~~~ 355 (479)
|.+|+ .||+..|.|++|.|.|+.++
T Consensus 267 A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 267 AERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp HHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred HHHHH-HhcCCEECCcEEEEEEecCC
Confidence 99999 99999999999999999876
No 2
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=6.9e-45 Score=341.99 Aligned_cols=247 Identities=19% Similarity=0.354 Sum_probs=227.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 179 (479)
..++|||+|||+++|+++|+++|+.|| |.+|.+ ++++|||||+|.+.++|.+|++.+++..|.|+.|.|.++.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 579999999999999999999999999 999988 4578999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCee
Q 011693 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (479)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (479)
...+|||+|||..+++++|+++|+.||. |..+.++.+ ..++.++|||||+|.+.++|.+|+..+++. .+.++.+.+
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~-i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l~~~--~~~g~~i~v 169 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGS-LERCFLVYS-ERTGQSKGYGFAEYMKKDSAARAKSDLLGK--PLGPRTLYV 169 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTC--EETTEECEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCC-eeEEEEEee-CCCCccceEEEEEECCHHHHHHHHHHhCCC--EeCCcEEEE
Confidence 9999999999999999999999999999 999999988 678999999999999999999999999985 557899999
Q ss_pred eeCCCCCCCCCCCccccEEEEcCCCCCC-CHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhC
Q 011693 260 SWADPRNVDSSGASQVKAVYVKNLPRNV-TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (479)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~-t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~ 338 (479)
.|+.+..... .....++|||+|||.++ |+++|+++|+.||.|.+|+|+.+. ++.++|||||+|.+.++|.+|+..||
T Consensus 170 ~~a~~~~~~~-~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~ 247 (284)
T 3smz_A 170 HWTDAGQLTP-ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQAD 247 (284)
T ss_dssp EECCGGGCCT-TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHT
T ss_pred EECCCCCCCc-ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhC
Confidence 9998765443 33456899999999995 999999999999999999999987 45569999999999999999999999
Q ss_pred CceecCeEEEEEeccCCCccC
Q 011693 339 KYELDGQALECSLAKPQADQK 359 (479)
Q Consensus 339 ~~~~~g~~l~v~~a~~~~~~~ 359 (479)
+..|.|++|+|.|+.++..++
T Consensus 248 g~~~~g~~l~v~~a~~~~~~~ 268 (284)
T 3smz_A 248 GLSLGGSHLRVSFCAPGPPGR 268 (284)
T ss_dssp TCEETTEECEEEECCSSSCHH
T ss_pred CCccCCeEEEEEEecCCCccc
Confidence 999999999999999877543
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2.9e-36 Score=270.14 Aligned_cols=172 Identities=24% Similarity=0.394 Sum_probs=153.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 179 (479)
+.++|||+|||+++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+||+.+++..+.|+.|++.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCee
Q 011693 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (479)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (479)
......
T Consensus 94 ~~~~~~-------------------------------------------------------------------------- 99 (213)
T 4f02_A 94 RDPSLR-------------------------------------------------------------------------- 99 (213)
T ss_dssp CCTHHH--------------------------------------------------------------------------
T ss_pred cccccc--------------------------------------------------------------------------
Confidence 321100
Q ss_pred eeCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCC
Q 011693 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (479)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~ 339 (479)
.....+|||+|||+++|+++|+++|++||.|.+|+|+.++.+ ++|||||+|.+.++|.+||+.||+
T Consensus 100 ------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~--~~g~~fV~f~~~~~a~~Ai~~lng 165 (213)
T 4f02_A 100 ------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNG 165 (213)
T ss_dssp ------------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE--EEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ------------ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCC--CceEEEEEeCCHHHHHHHHHHhCC
Confidence 001268999999999999999999999999999999988643 589999999999999999999999
Q ss_pred ceecCeEEEEEeccCCCccC
Q 011693 340 YELDGQALECSLAKPQADQK 359 (479)
Q Consensus 340 ~~~~g~~l~v~~a~~~~~~~ 359 (479)
..|+|++|+|.++.++..+.
T Consensus 166 ~~~~g~~i~V~~a~~~~~~~ 185 (213)
T 4f02_A 166 MLLNDRKVFVGRFKSRKERE 185 (213)
T ss_dssp CEETTEECEEEECCCHHHHH
T ss_pred CEECCEEEEEEEcCCCcccc
Confidence 99999999999998875543
No 4
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1.5e-34 Score=256.19 Aligned_cols=181 Identities=20% Similarity=0.401 Sum_probs=152.9
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Q 011693 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (479)
Q Consensus 96 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v 175 (479)
..+...++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+||+ +++..|.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeee
Confidence 345567999999999999999999999999999999999999999999999999999999999995 5999999999999
Q ss_pred eecccccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCC
Q 011693 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN 255 (479)
Q Consensus 176 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~ 255 (479)
.++.+..... .
T Consensus 87 ~~~~~~~~~~-------------------------------------~-------------------------------- 97 (196)
T 1l3k_A 87 KRAVSREDSQ-------------------------------------R-------------------------------- 97 (196)
T ss_dssp EECCC---------------------------------------------------------------------------
T ss_pred ecccCccccc-------------------------------------c--------------------------------
Confidence 8875431100 0
Q ss_pred CCeeeeCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHH
Q 011693 256 APTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335 (479)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~ 335 (479)
.......++|||+|||+++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+||.
T Consensus 98 -------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 98 -------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp ------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred -------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH
Confidence 0001123799999999999999999999999999999999999888889999999999999999998
Q ss_pred HhCCceecCeEEEEEeccCCCccCC
Q 011693 336 NTEKYELDGQALECSLAKPQADQKS 360 (479)
Q Consensus 336 ~l~~~~~~g~~l~v~~a~~~~~~~~ 360 (479)
. ++..|+|+.|.|.++.++.....
T Consensus 165 ~-~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 165 Q-KYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp C-SCCEETTEECEEEECC-------
T ss_pred h-CCcEECCEEEEEEecCChhHhcc
Confidence 6 89999999999999998876543
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-34 Score=244.80 Aligned_cols=166 Identities=21% Similarity=0.361 Sum_probs=151.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecccc
Q 011693 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (479)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~ 181 (479)
++|||+|||+++|+++|+++|++||.|.+|+|+.++. ++++|||||+|.+.++|.+|++.+++..|.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 5899999999999999999999999999999999974 789999999999999999999999999999999999887542
Q ss_pred cccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCeeee
Q 011693 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261 (479)
Q Consensus 182 ~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 261 (479)
..
T Consensus 80 ~~------------------------------------------------------------------------------ 81 (166)
T 3md3_A 80 QQ------------------------------------------------------------------------------ 81 (166)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 11
Q ss_pred CCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCce
Q 011693 262 ADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE 341 (479)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~ 341 (479)
.......+|||+|||..+|+++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|+..||+..
T Consensus 82 --------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 153 (166)
T 3md3_A 82 --------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 153 (166)
T ss_dssp --------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred --------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Confidence 001123799999999999999999999999999999999999888999999999999999999999999999
Q ss_pred ecCeEEEEEeccC
Q 011693 342 LDGQALECSLAKP 354 (479)
Q Consensus 342 ~~g~~l~v~~a~~ 354 (479)
|+|++|+|.||++
T Consensus 154 ~~g~~i~v~~a~~ 166 (166)
T 3md3_A 154 LNGRPLRINWAAK 166 (166)
T ss_dssp ETTEECEEEESCC
T ss_pred cCCcEEEEEecCC
Confidence 9999999999864
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=7.4e-34 Score=245.19 Aligned_cols=165 Identities=26% Similarity=0.456 Sum_probs=152.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 179 (479)
..++|||+|||+++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.+++..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999999899999999999999999999999999999999999998876
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCee
Q 011693 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (479)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (479)
+...
T Consensus 82 ~~~~---------------------------------------------------------------------------- 85 (168)
T 1b7f_A 82 PGGE---------------------------------------------------------------------------- 85 (168)
T ss_dssp CCSS----------------------------------------------------------------------------
T ss_pred CCcc----------------------------------------------------------------------------
Confidence 4211
Q ss_pred eeCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCC
Q 011693 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (479)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~ 339 (479)
....++|||+|||..+|+++|+++|++||.|.++.|+.++.++.++|||||+|.+.++|.+|+..||+
T Consensus 86 ------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 153 (168)
T 1b7f_A 86 ------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN 153 (168)
T ss_dssp ------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 01127999999999999999999999999999999999998888899999999999999999999999
Q ss_pred ceecC--eEEEEEec
Q 011693 340 YELDG--QALECSLA 352 (479)
Q Consensus 340 ~~~~g--~~l~v~~a 352 (479)
..|.| ++|+|+||
T Consensus 154 ~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 154 VIPEGGSQPLSVRLA 168 (168)
T ss_dssp CCCTTCSSCCEEEEC
T ss_pred CEecCCCeEEEEEeC
Confidence 99988 99999986
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=2.7e-33 Score=252.06 Aligned_cols=181 Identities=21% Similarity=0.402 Sum_probs=155.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 180 (479)
.++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 58999999999999999999999999999999999998999999999999999999999999999999999999977654
Q ss_pred ccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCeee
Q 011693 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVS 260 (479)
Q Consensus 181 ~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 260 (479)
.... ....... ...
T Consensus 108 ~~~~----------~~~~~~~----------------------------------------~~~---------------- 121 (216)
T 2qfj_A 108 IGQA----------QPIIDQL----------------------------------------AEE---------------- 121 (216)
T ss_dssp CGGG----------HHHHHHH----------------------------------------HHH----------------
T ss_pred cccc----------chhhhhh----------------------------------------hcc----------------
Confidence 3210 0000000 000
Q ss_pred eCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCc
Q 011693 261 WADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340 (479)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~ 340 (479)
....++|||+|||.++|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|.+|+..||+.
T Consensus 122 -----------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~ 190 (216)
T 2qfj_A 122 -----------ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLF 190 (216)
T ss_dssp -----------HTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred -----------cCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCC
Confidence 011279999999999999999999999999999999999988888999999999999999999999999
Q ss_pred eecCeEEEEEeccCCCcc
Q 011693 341 ELDGQALECSLAKPQADQ 358 (479)
Q Consensus 341 ~~~g~~l~v~~a~~~~~~ 358 (479)
.|.|++|+|.++.++...
T Consensus 191 ~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 191 DLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp BCSSSBCEEEECSSCSST
T ss_pred EeCCcEEEEEEecCCCCC
Confidence 999999999999877543
No 8
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=2.4e-33 Score=241.72 Aligned_cols=164 Identities=24% Similarity=0.464 Sum_probs=151.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 180 (479)
+++|||+|||+++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.+++..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 58999999999999999999999999999999999998999999999999999999999999999999999999987754
Q ss_pred ccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCeee
Q 011693 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVS 260 (479)
Q Consensus 181 ~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 260 (479)
...
T Consensus 82 ~~~----------------------------------------------------------------------------- 84 (167)
T 1fxl_A 82 SSA----------------------------------------------------------------------------- 84 (167)
T ss_dssp CCG-----------------------------------------------------------------------------
T ss_pred Ccc-----------------------------------------------------------------------------
Confidence 211
Q ss_pred eCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCc
Q 011693 261 WADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340 (479)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~ 340 (479)
.....+|||+|||.++|+++|+++|++||.|.+++|+.++.++.++|||||+|.+.++|.+|+..||+.
T Consensus 85 -----------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 153 (167)
T 1fxl_A 85 -----------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 153 (167)
T ss_dssp -----------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred -----------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC
Confidence 011268999999999999999999999999999999999988888999999999999999999999999
Q ss_pred eecCeE--EEEEec
Q 011693 341 ELDGQA--LECSLA 352 (479)
Q Consensus 341 ~~~g~~--l~v~~a 352 (479)
.|.|+. |+|+||
T Consensus 154 ~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 154 KPSGATEPITVKFA 167 (167)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred ccCCCccceEEEeC
Confidence 999965 888876
No 9
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=4.5e-34 Score=246.27 Aligned_cols=165 Identities=19% Similarity=0.441 Sum_probs=150.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 179 (479)
++++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+|++ +...|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 46899999999999999999999999999999999999999999999999999999999997 4678999999887664
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCee
Q 011693 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (479)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (479)
+...
T Consensus 80 ~~~~---------------------------------------------------------------------------- 83 (167)
T 2cjk_A 80 PRDE---------------------------------------------------------------------------- 83 (167)
T ss_dssp CHHH----------------------------------------------------------------------------
T ss_pred chhh----------------------------------------------------------------------------
Confidence 3210
Q ss_pred eeCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCC
Q 011693 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (479)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~ 339 (479)
.....+|||+|||+++|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|.+|++ +++
T Consensus 84 ------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~ 150 (167)
T 2cjk_A 84 ------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKF 150 (167)
T ss_dssp ------------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSE
T ss_pred ------------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCC
Confidence 0012689999999999999999999999999999999999888889999999999999999998 899
Q ss_pred ceecCeEEEEEeccCC
Q 011693 340 YELDGQALECSLAKPQ 355 (479)
Q Consensus 340 ~~~~g~~l~v~~a~~~ 355 (479)
..|.|++|+|.+|.|+
T Consensus 151 ~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 151 IDFKDRKIEIKRAEPR 166 (167)
T ss_dssp ECSSSSCEEEEECCCC
T ss_pred EEeCCeEEEEeecCCC
Confidence 9999999999999876
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=1.7e-32 Score=238.30 Aligned_cols=166 Identities=20% Similarity=0.402 Sum_probs=145.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCC--CCcceEEEEeCCHHHHHHHHHHhCCCccC---CeEEE
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS--ENKGFAFVTFRNVELASKAIDKLNNTEFK---GKKIR 174 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g--~~~g~afV~F~~~~~A~~a~~~~~~~~~~---g~~i~ 174 (479)
+.++|||+|||+++|+++|+++|++||.|.+|+|++++.++ +++|||||+|.+.++|.+|++.+++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 47899999999999999999999999999999999998877 89999999999999999999999998775 56666
Q ss_pred EeecccccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCC
Q 011693 175 CSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGT 254 (479)
Q Consensus 175 v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~ 254 (479)
+.++.....
T Consensus 82 ~~~~~~~~~----------------------------------------------------------------------- 90 (175)
T 3nmr_A 82 MKPADSEKN----------------------------------------------------------------------- 90 (175)
T ss_dssp EEECGGGCC-----------------------------------------------------------------------
T ss_pred Ecccccccc-----------------------------------------------------------------------
Confidence 655443211
Q ss_pred CCCeeeeCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHH
Q 011693 255 NAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334 (479)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~ 334 (479)
.....++|||+|||+++|+++|+++|++||.|.+|+|+.++. +.++|||||+|.+.++|.+|+
T Consensus 91 ----------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~-g~~~g~afV~f~~~~~A~~A~ 153 (175)
T 3nmr_A 91 ----------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRAMAQTAI 153 (175)
T ss_dssp ----------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSHHHHHHHH
T ss_pred ----------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC-CCEEEEEEEEECCHHHHHHHH
Confidence 011237999999999999999999999999999999999975 566999999999999999999
Q ss_pred HHhCCceec---CeEEEEEecc
Q 011693 335 KNTEKYELD---GQALECSLAK 353 (479)
Q Consensus 335 ~~l~~~~~~---g~~l~v~~a~ 353 (479)
..||+..+. +++|+|+||.
T Consensus 154 ~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 154 KAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHTTSCCCTTCSSCCEEEECC
T ss_pred HHhcCCcccCCCCCCeEEEecC
Confidence 999998776 4999999984
No 11
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.98 E-value=3.4e-31 Score=234.93 Aligned_cols=183 Identities=21% Similarity=0.359 Sum_probs=149.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhc----C-------CeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCcc
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSI----G-------EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF 168 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~----G-------~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~ 168 (479)
..++|||+|||+++|+++|+++|+.| | .|.++.+ ++++|||||+|.+.++|.+|| .|++..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 5 5666665 456899999999999999999 8999999
Q ss_pred CCeEEEEeecccccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCC
Q 011693 169 KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP 248 (479)
Q Consensus 169 ~g~~i~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 248 (479)
.|+.|.|.++.......-.. ...
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~---------------------------------~~~------------------------ 98 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMS---------------------------------ENP------------------------ 98 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSS---------------------------------SCS------------------------
T ss_pred cCceEEEeCCCCCCCCCCCc---------------------------------CCC------------------------
Confidence 99999999876542210000 000
Q ss_pred CcccCCCCCeeeeCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChH
Q 011693 249 NFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328 (479)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~ 328 (479)
. ...+...........++|||+|||+++|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.+
T Consensus 99 ~-----------~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~ 167 (198)
T 2yh0_A 99 S-----------VYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDIN 167 (198)
T ss_dssp S-----------CCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSS
T ss_pred c-----------CCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHH
Confidence 0 00000011112234589999999999999999999999999999999999988888999999999999
Q ss_pred HHHHHHHHhCCceecCeEEEEEeccCCCc
Q 011693 329 SAMKALKNTEKYELDGQALECSLAKPQAD 357 (479)
Q Consensus 329 ~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 357 (479)
+|.+|+..||+..|.|++|+|.++.++..
T Consensus 168 ~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 168 VTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp HHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred HHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999999999999988754
No 12
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.98 E-value=3.2e-32 Score=236.52 Aligned_cols=166 Identities=20% Similarity=0.342 Sum_probs=144.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEe
Q 011693 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (479)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~ 176 (479)
.+...++|||+|||+++|+++|+++|..||.|.. .++.+..+++++|||||+|.+.++|.+|+ .|++..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEe
Confidence 4556899999999999999999999999998776 34455567899999999999999999999 599999999999998
Q ss_pred ecccccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCC
Q 011693 177 TSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNA 256 (479)
Q Consensus 177 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~ 256 (479)
++.+...
T Consensus 87 ~~~~~~~------------------------------------------------------------------------- 93 (175)
T 1fje_B 87 KPKGRDS------------------------------------------------------------------------- 93 (175)
T ss_dssp CCCCSSC-------------------------------------------------------------------------
T ss_pred cCCCccc-------------------------------------------------------------------------
Confidence 8764311
Q ss_pred CeeeeCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHH
Q 011693 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (479)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~ 336 (479)
......++|||+|||.++|+++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..
T Consensus 94 -------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 1fje_B 94 -------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEE 155 (175)
T ss_dssp -------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHH
T ss_pred -------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHH
Confidence 001123899999999999999999999999988766 45566689999999999999999999
Q ss_pred hCCceecCeEEEEEeccCC
Q 011693 337 TEKYELDGQALECSLAKPQ 355 (479)
Q Consensus 337 l~~~~~~g~~l~v~~a~~~ 355 (479)
||+..|.|++|+|.|+.++
T Consensus 156 l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 156 KQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HTEEEETTEEEEEEECSSC
T ss_pred hCCCEECCeEEEEEecCCC
Confidence 9999999999999999875
No 13
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.98 E-value=2.4e-31 Score=230.31 Aligned_cols=159 Identities=21% Similarity=0.412 Sum_probs=143.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhc----C-------CeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCcc
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSI----G-------EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF 168 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~----G-------~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~ 168 (479)
+.++|||+|||+++|+++|+++|++| | .|.++.+.+ ++|||||+|.+.++|.+|+ .+++..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 777777653 5899999999999999999 8999999
Q ss_pred CCeEEEEeecccccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCC
Q 011693 169 KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP 248 (479)
Q Consensus 169 ~g~~i~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 248 (479)
.|+.|.|.++.....
T Consensus 76 ~g~~i~v~~~~~~~~----------------------------------------------------------------- 90 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP----------------------------------------------------------------- 90 (172)
T ss_dssp TTEECEEECCSSCCC-----------------------------------------------------------------
T ss_pred cCceeeecCCcccCC-----------------------------------------------------------------
Confidence 999999986543210
Q ss_pred CcccCCCCCeeeeCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChH
Q 011693 249 NFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328 (479)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~ 328 (479)
....++|||+|||.++|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.+
T Consensus 91 -----------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~ 147 (172)
T 2g4b_A 91 -----------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDIN 147 (172)
T ss_dssp -----------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTT
T ss_pred -----------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHH
Confidence 001278999999999999999999999999999999999988888999999999999
Q ss_pred HHHHHHHHhCCceecCeEEEEEecc
Q 011693 329 SAMKALKNTEKYELDGQALECSLAK 353 (479)
Q Consensus 329 ~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (479)
+|.+|+..||+..|+|++|.|++|.
T Consensus 148 ~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 148 VTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9999999999999999999999974
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=5e-31 Score=233.20 Aligned_cols=194 Identities=18% Similarity=0.286 Sum_probs=144.6
Q ss_pred CCceEEEcCCC-CCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeec
Q 011693 100 HGSEVYIGGIP-HDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (479)
Q Consensus 100 ~~~~l~V~nLp-~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 178 (479)
.+++|||+||| +++|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+||+.||+..|.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 89999999999999999999999875 3899999999999999999999999999999999998
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCe
Q 011693 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT 258 (479)
Q Consensus 179 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 258 (479)
..... .|..... ...+.. .+..|... . . .
T Consensus 78 ~~~~~-----~p~~~~~-----------------------~~~~~~---~~~~~~~~-------------~--~--~--- 106 (205)
T 3tyt_A 78 KQPAI-----MPGQSYG-----------------------LEDGSC---SYKDFSES-------------R--N--N--- 106 (205)
T ss_dssp SCSCC-----CCCSCCB-----------------------CTTSCB---SEEECTTC-------------T--T--C---
T ss_pred cCCcc-----CCCcccc-----------------------cccCCc---cccccCCC-------------c--c--c---
Confidence 75432 1110000 000000 00000000 0 0 0
Q ss_pred eeeCCCC-CCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCe--EEEEecCCCCCCCcccEEEEEeCChHHHHHHHH
Q 011693 259 VSWADPR-NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRI--TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335 (479)
Q Consensus 259 ~~~~~~~-~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v--~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~ 335 (479)
.+..+. ........++++|||+|||+++|+++|+++|++||.| .+|+|+.++ +. ++|||||+|.+.++|.+||.
T Consensus 107 -r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-~~-~~g~gfV~f~~~~~A~~Ai~ 183 (205)
T 3tyt_A 107 -RFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-SE-RSSSGLLEWDSKSDALETLG 183 (205)
T ss_dssp -SCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-SS-SSEEEEEECSSHHHHHHHHH
T ss_pred -cccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-CC-CceEEEEEeCCHHHHHHHHH
Confidence 000000 0000012335799999999999999999999999999 899999886 33 36999999999999999999
Q ss_pred HhCCceecCe----EEEEEec
Q 011693 336 NTEKYELDGQ----ALECSLA 352 (479)
Q Consensus 336 ~l~~~~~~g~----~l~v~~a 352 (479)
.||+..|.|+ ++.|++|
T Consensus 184 ~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 184 FLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHTTCEECCSSSSSCEECEEE
T ss_pred HhCCCCccCCCCCcceEEEec
Confidence 9999999876 6787775
No 15
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=3.2e-30 Score=241.71 Aligned_cols=246 Identities=16% Similarity=0.241 Sum_probs=153.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEE
Q 011693 98 PPHGSEVYIGGIPHDASEHDLR----DFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~----~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i 173 (479)
....++|||+|||+++|+++|+ ++|+.||.|.+|+|++ +++++|||||+|.+.++|.+||+.|++..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4568999999999999999977 8999999999999986 58899999999999999999999999999999999
Q ss_pred EEeecccccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEe----CCHh-HHHHHHHhccCC
Q 011693 174 RCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY----HNHK-CAEYSRQKMTNP 248 (479)
Q Consensus 174 ~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f----~~~~-~a~~a~~~~~~~ 248 (479)
+|.++............. ..+......-..... ...................+.+.- .... .+......+.+.
T Consensus 83 ~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGT-FVERDRKREKRKPKS-QETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEEeccCcchhhhhcCC-cccchhhhhhhhccc-cchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 999987654322211111 101000000000000 000000000000000000000000 0000 000000000000
Q ss_pred -Cccc-----CCCCC-eeee-------------CCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEec
Q 011693 249 -NFKL-----GTNAP-TVSW-------------ADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVP 308 (479)
Q Consensus 249 -~~~~-----~~~~~-~~~~-------------~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~ 308 (479)
.... ....+ ...+ ..+.........++++|||+|||..+|+++|+++|++||.|.+|+|+
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~ 240 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe
Confidence 0000 00000 0000 00000011233456899999999999999999999999999999999
Q ss_pred CCCCCCCcccEEEEEeCChHHHHHHHHHhCCceec-CeEEEEEecc
Q 011693 309 PAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD-GQALECSLAK 353 (479)
Q Consensus 309 ~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~-g~~l~v~~a~ 353 (479)
.++ +|||||+|.+.++|.+||..||+..|. |+.|+|.|++
T Consensus 241 ~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 241 PGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred cCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 776 689999999999999999999999999 9999999986
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=3.6e-30 Score=233.14 Aligned_cols=194 Identities=20% Similarity=0.311 Sum_probs=149.4
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEe
Q 011693 98 PPHGSEVYIGGIPH-DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (479)
Q Consensus 98 ~~~~~~l~V~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~ 176 (479)
.+..++|||+|||+ ++|+++|+++|+.||.|.+|+|++++ +|||||+|.+.++|.+|++.|++..|.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45679999999999 99999999999999999999999874 7899999999999999999999999999999999
Q ss_pred ecccccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCC
Q 011693 177 TSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNA 256 (479)
Q Consensus 177 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~ 256 (479)
++....... +...... .... ..|.. ....
T Consensus 106 ~a~~~~~~~----~~~~~~~------------------------~~~~-----~~~~~-------------~~~~----- 134 (229)
T 2adc_A 106 LSKHQNVQL----PREGQED------------------------QGLT-----KDYGN-------------SPLH----- 134 (229)
T ss_dssp CCSCCCCCC----CCSSSST------------------------TTTE-----EECTT-------------CSSC-----
T ss_pred EecCccccC----ccccccc------------------------cccc-----ccccc-------------Cccc-----
Confidence 887543211 1100000 0000 00000 0000
Q ss_pred CeeeeCCCC-CCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcC-CeEEEEecCCCCCCCcccEEEEEeCChHHHHHHH
Q 011693 257 PTVSWADPR-NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334 (479)
Q Consensus 257 ~~~~~~~~~-~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~ 334 (479)
.+..+. ........++++|||+|||..+|+++|+++|++|| .|..|+|+.+. +|||||+|.+.++|.+|+
T Consensus 135 ---~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-----~g~afV~f~~~~~A~~Ai 206 (229)
T 2adc_A 135 ---RFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQAL 206 (229)
T ss_dssp ---CCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS-----TTCEEEEESSHHHHHHHH
T ss_pred ---ccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC-----CcEEEEEECCHHHHHHHH
Confidence 000000 00001123458999999999999999999999999 99999997643 699999999999999999
Q ss_pred HHhCCceec-CeEEEEEeccCC
Q 011693 335 KNTEKYELD-GQALECSLAKPQ 355 (479)
Q Consensus 335 ~~l~~~~~~-g~~l~v~~a~~~ 355 (479)
..||+..|. |++|+|.|++++
T Consensus 207 ~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 207 IDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp HHHTTCBSSSSCBCEEEECSSC
T ss_pred HHHCCCccCCCCeEEEEEecCC
Confidence 999999999 999999999875
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=6.3e-30 Score=226.64 Aligned_cols=191 Identities=20% Similarity=0.323 Sum_probs=148.2
Q ss_pred CceEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 011693 101 GSEVYIGGIPH-DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (479)
Q Consensus 101 ~~~l~V~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 179 (479)
+++|||+|||+ ++|+++|+++|+.||.|.+|+|+.++ +|||||+|.+.++|.+|++.|++..|.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 68999999999 99999999999999999999999874 7899999999999999999999999999999999987
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCee
Q 011693 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (479)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (479)
..... ++..... ..+..+. |.. ... .
T Consensus 78 ~~~~~----~~~~~~~------------------------~~~~~~~-----~~~-------------~~~---~----- 103 (198)
T 1qm9_A 78 HQNVQ----LPREGQE------------------------DQGLTKD-----YGN-------------SPL---H----- 103 (198)
T ss_dssp CCSCC----CSSSSSS------------------------SSSCEEE-----SSC-------------CCT---T-----
T ss_pred CCCcC----CCCcCCc------------------------ccccccc-----ccC-------------Cch---h-----
Confidence 64321 1110000 0000000 000 000 0
Q ss_pred eeCCCC-CCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcC-CeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHh
Q 011693 260 SWADPR-NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337 (479)
Q Consensus 260 ~~~~~~-~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l 337 (479)
.+..+. ........++++|||+|||..+|+++|+++|++|| .|.+|+|+.+. +|+|||+|.+.++|.+|+..|
T Consensus 104 r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l 178 (198)
T 1qm9_A 104 RFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDL 178 (198)
T ss_dssp SSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHH
T ss_pred hccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHh
Confidence 000000 00011223468999999999999999999999999 99999998754 799999999999999999999
Q ss_pred CCceec-CeEEEEEeccCC
Q 011693 338 EKYELD-GQALECSLAKPQ 355 (479)
Q Consensus 338 ~~~~~~-g~~l~v~~a~~~ 355 (479)
|+..|. |++|+|.|++++
T Consensus 179 ~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 179 HNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp TSSCCSSCCSCCEEEECCC
T ss_pred cCCccCCCCeEEEEeeccc
Confidence 999999 999999999865
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=1.1e-29 Score=234.65 Aligned_cols=160 Identities=27% Similarity=0.405 Sum_probs=143.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
....++|||+|||+++|+++|+++|+.||.|.+|+|.+ ++|||||+|.+.++|.+|+..+++..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 34568999999999999999999999999999999965 479999999999999999999999999999999987
Q ss_pred cccccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCC
Q 011693 178 SQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP 257 (479)
Q Consensus 178 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~ 257 (479)
+.+
T Consensus 93 a~~----------------------------------------------------------------------------- 95 (261)
T 3sde_A 93 ATH----------------------------------------------------------------------------- 95 (261)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 642
Q ss_pred eeeeCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHh
Q 011693 258 TVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337 (479)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l 337 (479)
..+|||+|||+.+|+++|+++|+.||.|.+|.|+.+. ++.++|||||+|.+.++|.+||..|
T Consensus 96 -----------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 96 -----------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp -----------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred -----------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 1689999999999999999999999999999999994 6667999999999999999999999
Q ss_pred C-Cceec---CeEEEEEeccCCCcc
Q 011693 338 E-KYELD---GQALECSLAKPQADQ 358 (479)
Q Consensus 338 ~-~~~~~---g~~l~v~~a~~~~~~ 358 (479)
| +..+. +++|.|.++.+....
T Consensus 158 ~~~~~~~~~~~r~i~v~~~~~~~~~ 182 (261)
T 3sde_A 158 GDGAFLLTTTPRPVIVEPMEQFDDE 182 (261)
T ss_dssp HHSCEESSSSCCBCEEEECCCEESS
T ss_pred cCCeEEecCCCceEEEeeccccCcc
Confidence 5 44444 899999999876543
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.94 E-value=2.5e-26 Score=215.41 Aligned_cols=164 Identities=18% Similarity=0.355 Sum_probs=152.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
.+..++|||+|||+++|+++|+++|+.||.|..|+++.++.+++++|||||+|.+.++|.+|++.+++..|.|+.|.|.+
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc---------cccccCCCCCCC-CHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccC
Q 011693 178 SQAK---------YRLFIGNIPRNW-GSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTN 247 (479)
Q Consensus 178 ~~~~---------~~l~v~~l~~~~-~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~ 247 (479)
+.+. .+|||+|||..+ ++++|+++|+.||. |..+.++.+ .+++++|||||+|.+.++|.+|+..|++
T Consensus 172 a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~-i~~v~i~~~--~~g~~~g~afV~f~~~~~A~~A~~~l~g 248 (284)
T 3smz_A 172 TDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHS-PTFCQLACG--QDGQLKGFAVLEYETAEMAEEAQQQADG 248 (284)
T ss_dssp CCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSC-CSEEEEEEC--SSCCEEEEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCC-eEEEEEEEC--CCCCcccEEEEEeCCHHHHHHHHHHhCC
Confidence 8754 479999999995 99999999999999 999999988 4799999999999999999999999998
Q ss_pred CCcccCCCCCeeeeCCCCC
Q 011693 248 PNFKLGTNAPTVSWADPRN 266 (479)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~ 266 (479)
..+ .++.+.|.|+.++.
T Consensus 249 ~~~--~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 249 LSL--GGSHLRVSFCAPGP 265 (284)
T ss_dssp CEE--TTEECEEEECCSSS
T ss_pred Ccc--CCeEEEEEEecCCC
Confidence 754 78899999988765
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=1.5e-25 Score=210.97 Aligned_cols=162 Identities=21% Similarity=0.344 Sum_probs=140.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 99 PHGSEVYIGGIPHDASEHDLRDFCQSIG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
...++|||+|||+++|+++|+++|+.|| .|..|.|+.++. +.++|||||+|.+.++|.+|++.|++..|.|+.|.|.+
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3578999999999999999999999999 999999999875 88999999999999999999999999999999999998
Q ss_pred cccc-------------cccccCCCCCC-CCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHH
Q 011693 178 SQAK-------------YRLFIGNIPRN-WGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243 (479)
Q Consensus 178 ~~~~-------------~~l~v~~l~~~-~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 243 (479)
+.+. .+|||+|||.. +++++|+++|+.||. |..+.++.+...++.++|||||+|.+.++|.+|+
T Consensus 194 a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~-v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~- 271 (292)
T 2ghp_A 194 SNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGS-IEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL- 271 (292)
T ss_dssp CCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSC-EEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-
T ss_pred CCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCC-eeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-
Confidence 7542 57999999999 999999999999999 9999998873335999999999999999999999
Q ss_pred hccCCCcccCCCCCeeeeCCCC
Q 011693 244 KMTNPNFKLGTNAPTVSWADPR 265 (479)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~ 265 (479)
.|++. .+.++.+.|.|+.++
T Consensus 272 ~l~g~--~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 272 QMNRS--LLGNREISVSLADKK 291 (292)
T ss_dssp GGTTE--EETTEEEEEEECCCC
T ss_pred HhcCC--EECCcEEEEEEecCC
Confidence 99985 467899999998875
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.91 E-value=3.7e-23 Score=175.76 Aligned_cols=85 Identities=26% Similarity=0.463 Sum_probs=80.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEecc
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (479)
..++|||+|||+++|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|.+||..||+..|.|++|+|.++.
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 34899999999999999999999999999999999999888899999999999999999999999999999999999998
Q ss_pred CCCcc
Q 011693 354 PQADQ 358 (479)
Q Consensus 354 ~~~~~ 358 (479)
+....
T Consensus 149 ~~~~~ 153 (158)
T 2kn4_A 149 YGRPP 153 (158)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 76543
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=5.6e-22 Score=158.29 Aligned_cols=98 Identities=19% Similarity=0.398 Sum_probs=74.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
|...++|||+|||+++|+++|+++|++||.|.+|+|++++ +.++|||||+|.+.++|.+||+.|++..|.|+.|+|.+
T Consensus 2 P~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~ 79 (115)
T 4f25_A 2 PLGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 79 (115)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999986 55899999999999999999999999999999999998
Q ss_pred cccc--------------cccccCCCCCCCCHHH
Q 011693 178 SQAK--------------YRLFIGNIPRNWGSED 197 (479)
Q Consensus 178 ~~~~--------------~~l~v~~l~~~~~~~~ 197 (479)
+.++ .+|||+|||+.+|++.
T Consensus 80 a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 80 FKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SSCCCC----------------------------
T ss_pred CCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 7643 3699999999988763
No 23
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.86 E-value=2.8e-21 Score=162.44 Aligned_cols=139 Identities=19% Similarity=0.258 Sum_probs=113.0
Q ss_pred CCCcceEEEEeCCHHHHHHHHHHh-CCCccCCeEEEEeecccccccccCCCCCCCCHHHHHHHHHhhCCCeeEEEEeecC
Q 011693 140 SENKGFAFVTFRNVELASKAIDKL-NNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218 (479)
Q Consensus 140 g~~~g~afV~F~~~~~A~~a~~~~-~~~~~~g~~i~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~ 218 (479)
...+|+++|+|.+.++|++|++.+ ++..|.| .|.+.++.............
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~--------------------------- 61 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHH--------------------------- 61 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSC---------------------------
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccc---------------------------
Confidence 578999999999999999999999 9999999 99998775432110000000
Q ss_pred CCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCeeeeCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhh
Q 011693 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEH 298 (479)
Q Consensus 219 ~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~ 298 (479)
............++|||+|||+++|+++|+++|++
T Consensus 62 ---------------------------------------------~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~ 96 (150)
T 2i2y_A 62 ---------------------------------------------HHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGY 96 (150)
T ss_dssp ---------------------------------------------CCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHH
T ss_pred ---------------------------------------------cccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 00001112233489999999999999999999999
Q ss_pred cCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccCCC
Q 011693 299 HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA 356 (479)
Q Consensus 299 ~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 356 (479)
||.|.+|+|+.+ ++|||||+|.+.++|.+||..||+..|.|++|+|.++.++.
T Consensus 97 ~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 97 YGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred hCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999999987 38999999999999999999999999999999999998764
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=150.25 Aligned_cols=80 Identities=26% Similarity=0.449 Sum_probs=77.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccC
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (479)
.++|||+|||+++|+++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|.+|++.||+..|.|++|+|+||+|
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999986
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=2.5e-21 Score=149.69 Aligned_cols=82 Identities=26% Similarity=0.534 Sum_probs=79.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeec
Q 011693 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 178 (479)
..+++|||+|||+++|+++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 011693 179 QA 180 (479)
Q Consensus 179 ~~ 180 (479)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 26
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=6.1e-21 Score=145.17 Aligned_cols=83 Identities=19% Similarity=0.394 Sum_probs=77.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcC-CeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhC-CceecCeEEEEEecc
Q 011693 276 KAVYVKNLPRNVTQDQLKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE-KYELDGQALECSLAK 353 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l~~~F~~~G-~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~-~~~~~g~~l~v~~a~ 353 (479)
++|||+|||+++|+++|+++|++|| .|.+|+|++++.++.+||||||+|.+.++|.+||+.++ +..|.|++|+|.+|.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 7999999999999999999999999 79999999999999999999999999999999999874 567999999999998
Q ss_pred CCCcc
Q 011693 354 PQADQ 358 (479)
Q Consensus 354 ~~~~~ 358 (479)
++...
T Consensus 82 ~~~~~ 86 (91)
T 2lxi_A 82 PKPKI 86 (91)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87543
No 27
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.83 E-value=1.4e-21 Score=175.21 Aligned_cols=82 Identities=21% Similarity=0.236 Sum_probs=78.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcC--CeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEec
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHG--RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G--~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
.++|||+|||+++|+++|+++|++|| .|++|+|+.++.++.+||||||+|.+.++|.+||..||+..|.|++|+|.++
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 37999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 011693 353 KPQA 356 (479)
Q Consensus 353 ~~~~ 356 (479)
++..
T Consensus 148 ~~~~ 151 (229)
T 3q2s_C 148 NKQF 151 (229)
T ss_dssp CHHH
T ss_pred CCCc
Confidence 7654
No 28
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=3.7e-20 Score=145.81 Aligned_cols=84 Identities=25% Similarity=0.332 Sum_probs=80.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
+++.++|||+|||+++|+++|+++|++||.|.+|+|++++.|++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 011693 178 SQAK 181 (479)
Q Consensus 178 ~~~~ 181 (479)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8654
No 29
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=143.66 Aligned_cols=83 Identities=31% Similarity=0.517 Sum_probs=76.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHh-CCCccCCeEEEEeec
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL-NNTEFKGKKIRCSTS 178 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~-~~~~~~g~~i~v~~~ 178 (479)
+++|||+|||+++|+++|+++|++|| .|.+|+|++++.|++++|||||+|.+.++|.+||+.+ ++..|.|++|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 8999999999999999999999999999999999876 456799999999999
Q ss_pred ccccc
Q 011693 179 QAKYR 183 (479)
Q Consensus 179 ~~~~~ 183 (479)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87643
No 30
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=2.9e-20 Score=141.79 Aligned_cols=81 Identities=15% Similarity=0.324 Sum_probs=75.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCC--eEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCc----eecCeEE
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGR--ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY----ELDGQAL 347 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~--v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~----~~~g~~l 347 (479)
...+|||+|||+++|+++|+++|++||. |.+|+|++|+.++.+||||||+|.+.++|.+||+.||+. .|+||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3479999999999999999999999995 679999999999999999999999999999999999986 5999999
Q ss_pred EEEeccC
Q 011693 348 ECSLAKP 354 (479)
Q Consensus 348 ~v~~a~~ 354 (479)
.|+||+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999974
No 31
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.82 E-value=7.2e-20 Score=144.17 Aligned_cols=85 Identities=19% Similarity=0.231 Sum_probs=80.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEecc
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (479)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|.+||+.||+..|.|+.|+|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCcc
Q 011693 354 PQADQ 358 (479)
Q Consensus 354 ~~~~~ 358 (479)
....+
T Consensus 85 ~~~~~ 89 (110)
T 3s8s_A 85 KGQQR 89 (110)
T ss_dssp TTHHH
T ss_pred CCcHH
Confidence 66543
No 32
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3e-19 Score=138.64 Aligned_cols=86 Identities=21% Similarity=0.341 Sum_probs=81.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEec
Q 011693 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
...++|||+|||+++|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|.+||..||+..|.|++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34589999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred cCCCcc
Q 011693 353 KPQADQ 358 (479)
Q Consensus 353 ~~~~~~ 358 (479)
.++...
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 887654
No 33
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.81 E-value=2.5e-20 Score=142.14 Aligned_cols=81 Identities=22% Similarity=0.390 Sum_probs=75.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCC--eeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCC----ccCCeEE
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGE--VTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNT----EFKGKKI 173 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~--v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~----~~~g~~i 173 (479)
.-.+|||+|||+++|+++|+++|++||. |.+|+|++|+.|++++|||||+|.+.++|.+||+.|++. .|.||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3578999999999999999999999995 779999999999999999999999999999999999987 4899999
Q ss_pred EEeeccc
Q 011693 174 RCSTSQA 180 (479)
Q Consensus 174 ~v~~~~~ 180 (479)
.|.+|++
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999874
No 34
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.81 E-value=1.4e-19 Score=152.97 Aligned_cols=85 Identities=22% Similarity=0.339 Sum_probs=80.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEec
Q 011693 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
...++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|++|+|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred cCCCc
Q 011693 353 KPQAD 357 (479)
Q Consensus 353 ~~~~~ 357 (479)
.+...
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87654
No 35
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3e-19 Score=137.51 Aligned_cols=84 Identities=26% Similarity=0.495 Sum_probs=80.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEecc
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (479)
.+++|||+|||.++|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|.+||..||+..|.|++|+|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 34899999999999999999999999999999999999988899999999999999999999999999999999999998
Q ss_pred CCCc
Q 011693 354 PQAD 357 (479)
Q Consensus 354 ~~~~ 357 (479)
++..
T Consensus 84 ~~~~ 87 (95)
T 2dnz_A 84 ERLD 87 (95)
T ss_dssp CCCC
T ss_pred cccC
Confidence 7764
No 36
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4.2e-19 Score=137.76 Aligned_cols=86 Identities=23% Similarity=0.455 Sum_probs=80.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEec
Q 011693 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
.+.++|||+|||+++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+||. ||+..|.|++|+|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 445899999999999999999999999999999999999988899999999999999999999 9999999999999999
Q ss_pred cCCCccC
Q 011693 353 KPQADQK 359 (479)
Q Consensus 353 ~~~~~~~ 359 (479)
.++....
T Consensus 87 ~~~~~~~ 93 (99)
T 2dgs_A 87 EPRDSKS 93 (99)
T ss_dssp CCCCCCC
T ss_pred CCCcccC
Confidence 8876543
No 37
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.80 E-value=1.4e-19 Score=154.29 Aligned_cols=130 Identities=9% Similarity=0.126 Sum_probs=81.0
Q ss_pred EEeCCHhHHHHHHHhccCCCcccCCCCCeeeeCCC----------------CCCCCCCCccccEEEEcCCCCCCCHHHHH
Q 011693 230 IEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP----------------RNVDSSGASQVKAVYVKNLPRNVTQDQLK 293 (479)
Q Consensus 230 v~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~l~V~nLp~~~t~~~l~ 293 (479)
.+|...++|..++..+........++.+...+... ....+......++|||+|||+.+|+++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 56777788888888877766554454444443211 11112234456899999999999999999
Q ss_pred HHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccCCCccC
Q 011693 294 KLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK 359 (479)
Q Consensus 294 ~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~ 359 (479)
++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|++|.|.|+.++....
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999998776543
No 38
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.1e-19 Score=139.62 Aligned_cols=87 Identities=26% Similarity=0.435 Sum_probs=81.4
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
....++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|++|+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34458999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred ccCCCcc
Q 011693 352 AKPQADQ 358 (479)
Q Consensus 352 a~~~~~~ 358 (479)
+++....
T Consensus 90 a~~~~~~ 96 (103)
T 2dnm_A 90 ARYGRRD 96 (103)
T ss_dssp CSSCCSC
T ss_pred CCcCCCC
Confidence 9876544
No 39
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.80 E-value=1e-18 Score=139.67 Aligned_cols=88 Identities=23% Similarity=0.330 Sum_probs=82.1
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
....++|||+|||+.+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred ccCCCccC
Q 011693 352 AKPQADQK 359 (479)
Q Consensus 352 a~~~~~~~ 359 (479)
+.++....
T Consensus 92 a~~~~~~~ 99 (115)
T 2dgo_A 92 ATRKPPAP 99 (115)
T ss_dssp SSCCCCCS
T ss_pred ccCCCCCC
Confidence 98876543
No 40
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.9e-19 Score=139.03 Aligned_cols=89 Identities=24% Similarity=0.344 Sum_probs=82.6
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEE
Q 011693 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (479)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 350 (479)
.....++|||+|||+++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+||..||+..|.|++|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 33456899999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred eccCCCccC
Q 011693 351 LAKPQADQK 359 (479)
Q Consensus 351 ~a~~~~~~~ 359 (479)
++.++....
T Consensus 91 ~a~~~~~~~ 99 (105)
T 1x5u_A 91 KASAHNKNL 99 (105)
T ss_dssp ETTTTSCCC
T ss_pred ECCCCCcCC
Confidence 998876543
No 41
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.80 E-value=6.4e-20 Score=150.45 Aligned_cols=125 Identities=21% Similarity=0.310 Sum_probs=83.8
Q ss_pred EEEEEeCCHhHHHHHHHhccCCCcccCCCCCeeeeCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEE
Q 011693 227 FAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVV 306 (479)
Q Consensus 227 ~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~ 306 (479)
+.|++|.+...+..|+..+++....... ...+..+ +......++|||+|||+++|+++|+++|++||.|..|+
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~---~~~~~~~----~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~ 78 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG---SMSYGRP----PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVY 78 (135)
T ss_dssp --------------------------------CCSCCS----CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEE
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC---CCCcCCC----CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE
Confidence 5667777777888888888765432211 1122222 23344568999999999999999999999999999999
Q ss_pred ecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccCCCcc
Q 011693 307 VPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQ 358 (479)
Q Consensus 307 i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 358 (479)
|+.++.++.++|||||+|.+.++|.+||..||+..|.|++|+|.++++....
T Consensus 79 i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 79 IPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp CCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 9999988889999999999999999999999999999999999999876544
No 42
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.6e-19 Score=138.16 Aligned_cols=86 Identities=15% Similarity=0.223 Sum_probs=80.8
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCCeEEE-EecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEec
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v-~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
+.++|||+|||+++|+++|+++|++||.|..| +|+.++.++.++|||||+|.+.++|.+||..||+..|.|++|+|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34899999999999999999999999999999 99999888888999999999999999999999999999999999999
Q ss_pred cCCCccC
Q 011693 353 KPQADQK 359 (479)
Q Consensus 353 ~~~~~~~ 359 (479)
.++..+.
T Consensus 84 ~~~~~~~ 90 (96)
T 1x5t_A 84 FKKDSKG 90 (96)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 8876543
No 43
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.7e-19 Score=138.94 Aligned_cols=87 Identities=26% Similarity=0.420 Sum_probs=81.7
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEec
Q 011693 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
.+.++|||+|||+++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+||..||+..|.|++|+|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 34589999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred cCCCccC
Q 011693 353 KPQADQK 359 (479)
Q Consensus 353 ~~~~~~~ 359 (479)
.++....
T Consensus 90 ~~~~~~~ 96 (102)
T 2cqb_A 90 KPMRIKE 96 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 8876544
No 44
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.80 E-value=6.5e-20 Score=179.93 Aligned_cols=86 Identities=16% Similarity=0.341 Sum_probs=80.7
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
..+.++|||+|||+.+|+++|+++|++||.|+.|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34458999999999999999999999999999999999998998999999999999999999999999999999999999
Q ss_pred ccCCCc
Q 011693 352 AKPQAD 357 (479)
Q Consensus 352 a~~~~~ 357 (479)
+.+...
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 987653
No 45
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.80 E-value=3.1e-19 Score=133.69 Aligned_cols=81 Identities=21% Similarity=0.295 Sum_probs=78.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccCC
Q 011693 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 355 (479)
.+|||+|||.++|+++|+++|++||.|.+|.|+.++.++.++|||||+|.+.++|.+|+..||+..|.|++|+|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999999988889999999999999999999999999999999999999876
Q ss_pred C
Q 011693 356 A 356 (479)
Q Consensus 356 ~ 356 (479)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 46
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.80 E-value=6.7e-20 Score=164.35 Aligned_cols=82 Identities=22% Similarity=0.452 Sum_probs=77.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcC--CeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIG--EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
..++|||+|||+++|+++|+++|++|| .|++|+|++++.+++++|||||+|.+.++|.+||+.|++..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 578999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 011693 178 SQAK 181 (479)
Q Consensus 178 ~~~~ 181 (479)
+.+.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8754
No 47
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.5e-19 Score=139.10 Aligned_cols=87 Identities=24% Similarity=0.419 Sum_probs=81.7
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEec
Q 011693 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
...++|||+|||+++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+||..||+..|.|++|+|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 44589999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred cCCCccC
Q 011693 353 KPQADQK 359 (479)
Q Consensus 353 ~~~~~~~ 359 (479)
.++...+
T Consensus 90 ~~~~~~~ 96 (102)
T 1x5s_A 90 GKSSDNR 96 (102)
T ss_dssp ECCCCCC
T ss_pred CCCCCCC
Confidence 8876543
No 48
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.80 E-value=4.2e-19 Score=141.86 Aligned_cols=88 Identities=19% Similarity=0.369 Sum_probs=82.1
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
....++|||+|||+++|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|.+||..||+..|.|++|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34458999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred ccCCCccC
Q 011693 352 AKPQADQK 359 (479)
Q Consensus 352 a~~~~~~~ 359 (479)
++++....
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpz_A 102 KRSKNDSK 109 (115)
T ss_dssp CCCSCCCC
T ss_pred cCCCCcCC
Confidence 98876543
No 49
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.7e-19 Score=139.19 Aligned_cols=87 Identities=23% Similarity=0.443 Sum_probs=81.7
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
....++|||+|||+++|+++|+++|++||.|.+|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34458999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred ccCCCcc
Q 011693 352 AKPQADQ 358 (479)
Q Consensus 352 a~~~~~~ 358 (479)
+.++...
T Consensus 92 a~~~~~~ 98 (103)
T 2cq0_A 92 AKPSTNS 98 (103)
T ss_dssp SSCCCCS
T ss_pred CCCCCCC
Confidence 9887654
No 50
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.79 E-value=3.5e-19 Score=134.70 Aligned_cols=82 Identities=22% Similarity=0.314 Sum_probs=76.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEecc
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (479)
..++|||+|||.++|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|.+|+..||+..|.|++|+|.+++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 34899999999999999999999999999999999999888889999999999999999999999999999999999998
Q ss_pred CC
Q 011693 354 PQ 355 (479)
Q Consensus 354 ~~ 355 (479)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 65
No 51
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.79 E-value=5.7e-19 Score=136.11 Aligned_cols=84 Identities=19% Similarity=0.379 Sum_probs=79.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccC
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (479)
+++|||+|||.++++++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 47999999999999999999999999999999999999888999999999999999999999999999999999999988
Q ss_pred CCcc
Q 011693 355 QADQ 358 (479)
Q Consensus 355 ~~~~ 358 (479)
+...
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 7643
No 52
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=138.54 Aligned_cols=88 Identities=22% Similarity=0.388 Sum_probs=82.0
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhC------CceecCe
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE------KYELDGQ 345 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~------~~~~~g~ 345 (479)
..+.++|||+|||+++|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|.+||..|| +..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3445899999999999999999999999999999999999998899999999999999999999999 9999999
Q ss_pred EEEEEeccCCCccC
Q 011693 346 ALECSLAKPQADQK 359 (479)
Q Consensus 346 ~l~v~~a~~~~~~~ 359 (479)
+|+|.++.++....
T Consensus 92 ~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 92 QLKVDLAVTRDEAA 105 (111)
T ss_dssp EEEEECCCCCCCCC
T ss_pred EEEEEECCCCccCC
Confidence 99999998876543
No 53
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=9.2e-19 Score=138.03 Aligned_cols=88 Identities=23% Similarity=0.408 Sum_probs=81.6
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCC-CCCCCcccEEEEEeCChHHHHHHHHHh-CCceecCeEEEE
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPA-KPGQEKNRIGFVHFAERSSAMKALKNT-EKYELDGQALEC 349 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~-~~~~~~~G~afV~F~~~~~A~~A~~~l-~~~~~~g~~l~v 349 (479)
....++|||+|||+++|+++|+++|++||.|..|+|+.+ +.++.++|||||+|.+.++|.+||..| |+..|.|++|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 445689999999999999999999999999999999999 788888999999999999999999999 999999999999
Q ss_pred EeccCCCccC
Q 011693 350 SLAKPQADQK 359 (479)
Q Consensus 350 ~~a~~~~~~~ 359 (479)
.++.++....
T Consensus 92 ~~a~~~~~~~ 101 (107)
T 2cph_A 92 EWADSEVTVQ 101 (107)
T ss_dssp EECCCCCCCC
T ss_pred EeCCCCCCCC
Confidence 9998876543
No 54
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=4.6e-19 Score=136.48 Aligned_cols=85 Identities=27% Similarity=0.593 Sum_probs=80.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
++..++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 011693 178 SQAKY 182 (479)
Q Consensus 178 ~~~~~ 182 (479)
+.++.
T Consensus 82 a~~~~ 86 (95)
T 2dnz_A 82 VTERL 86 (95)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 97653
No 55
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.79 E-value=4.4e-19 Score=133.53 Aligned_cols=80 Identities=28% Similarity=0.430 Sum_probs=76.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEecc
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (479)
+.++|||+|||+++|+++|+++|++||.|.+|.|+.++.++.++|||||+|.+.++|.+|+..||+..|.|++|+|.+|+
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 45899999999999999999999999999999999998888889999999999999999999999999999999999984
No 56
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.79 E-value=3.1e-19 Score=142.64 Aligned_cols=105 Identities=18% Similarity=0.330 Sum_probs=96.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
+...++|||+|||+++|+++|+++|+.||.|.+|.|+.+ +.++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999976 55699999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCCHHHHHHHHHhhCC
Q 011693 178 SQAKYRLFIGNIPRNWGSEDLQKVVSEVGP 207 (479)
Q Consensus 178 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~ 207 (479)
+.+.... .+++...++++|..+|+.+|.
T Consensus 82 a~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 82 YNANRAF--QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CCHHHHT--TTSCHHHHHHHHHHHHHHHCC
T ss_pred ecCChhh--hhhhHhHhHHHHHHHHHHhCC
Confidence 9876543 678888899999999999985
No 57
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8e-19 Score=135.16 Aligned_cols=84 Identities=21% Similarity=0.288 Sum_probs=79.4
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEE
Q 011693 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (479)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 350 (479)
...+.++|||+|||+++|+++|+++|++||.|.+|.|+.++.++.++|||||+|.+.++|.+|+..||+..|.|++|+|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34556899999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred eccC
Q 011693 351 LAKP 354 (479)
Q Consensus 351 ~a~~ 354 (479)
++++
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9864
No 58
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.79 E-value=4.6e-19 Score=134.08 Aligned_cols=82 Identities=22% Similarity=0.430 Sum_probs=77.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 179 (479)
..++|||+|||+++|+++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 47899999999999999999999999999999999999899999999999999999999999999999999999999987
Q ss_pred cc
Q 011693 180 AK 181 (479)
Q Consensus 180 ~~ 181 (479)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 54
No 59
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.8e-18 Score=138.42 Aligned_cols=86 Identities=29% Similarity=0.458 Sum_probs=79.8
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
....++|||+|||+++|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|.+||..|++ .|.|++|+|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 34558999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred ccCCCcc
Q 011693 352 AKPQADQ 358 (479)
Q Consensus 352 a~~~~~~ 358 (479)
+.+....
T Consensus 93 a~~~~~~ 99 (116)
T 2cqd_A 93 AYLGAKP 99 (116)
T ss_dssp STTTCCC
T ss_pred cccCCCc
Confidence 9766443
No 60
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.79 E-value=8.8e-19 Score=137.85 Aligned_cols=87 Identities=22% Similarity=0.387 Sum_probs=81.1
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCcee---cCeEEE
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL---DGQALE 348 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~---~g~~l~ 348 (479)
....++|||+|||.++|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|.+||..||+..+ .+++|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 34458999999999999999999999999999999999999899999999999999999999999999887 899999
Q ss_pred EEeccCCCcc
Q 011693 349 CSLAKPQADQ 358 (479)
Q Consensus 349 v~~a~~~~~~ 358 (479)
|.++.++...
T Consensus 90 v~~a~~~~~~ 99 (106)
T 2dgp_A 90 VKPADSESRG 99 (106)
T ss_dssp EEECCCCSCC
T ss_pred EEECCccccc
Confidence 9999887654
No 61
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=6.1e-19 Score=136.87 Aligned_cols=86 Identities=26% Similarity=0.399 Sum_probs=81.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
..+.++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 44679999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cccccc
Q 011693 178 SQAKYR 183 (479)
Q Consensus 178 ~~~~~~ 183 (479)
+.++..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987644
No 62
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.79 E-value=4.5e-19 Score=133.49 Aligned_cols=82 Identities=28% Similarity=0.557 Sum_probs=78.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
+...++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45679999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred cc
Q 011693 178 SQ 179 (479)
Q Consensus 178 ~~ 179 (479)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 63
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.79 E-value=3.6e-19 Score=141.91 Aligned_cols=82 Identities=22% Similarity=0.400 Sum_probs=75.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccCC
Q 011693 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 355 (479)
.+|||+|||+++|+++|+++|++||.|.+|+|+.++.+ ++|||||+|.+.++|.+||..||+..|.|++|+|.++.++
T Consensus 6 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~--~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 6 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE--EEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCC--CCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 68999999999999999999999999999999998644 5899999999999999999999999999999999999876
Q ss_pred CccC
Q 011693 356 ADQK 359 (479)
Q Consensus 356 ~~~~ 359 (479)
..+.
T Consensus 84 ~~~~ 87 (115)
T 4f25_A 84 KERE 87 (115)
T ss_dssp CC--
T ss_pred cccc
Confidence 5443
No 64
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.79 E-value=1.7e-18 Score=143.39 Aligned_cols=88 Identities=25% Similarity=0.419 Sum_probs=82.2
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEE
Q 011693 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (479)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 350 (479)
.....++|||+|||.++|+++|+++|+.||.|.+|+|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34456899999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred eccCCCcc
Q 011693 351 LAKPQADQ 358 (479)
Q Consensus 351 ~a~~~~~~ 358 (479)
++.+...+
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99887644
No 65
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=8.4e-19 Score=136.32 Aligned_cols=85 Identities=12% Similarity=0.373 Sum_probs=79.1
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
....++|||+|||+++|+++|+++|++||.|.+|+|+.++ ++.++|||||+|.+.++|.+||..||+..|.|++|+|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3445899999999999999999999999999999999998 777799999999999999999999999999999999999
Q ss_pred ccCCCc
Q 011693 352 AKPQAD 357 (479)
Q Consensus 352 a~~~~~ 357 (479)
+.++..
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 987753
No 66
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.1e-18 Score=134.06 Aligned_cols=82 Identities=27% Similarity=0.494 Sum_probs=77.8
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
..+.++|||+|||+++|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|.+|++.||+..|.|++|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 34458999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred cc
Q 011693 352 AK 353 (479)
Q Consensus 352 a~ 353 (479)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 67
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.79 E-value=7e-19 Score=131.75 Aligned_cols=81 Identities=16% Similarity=0.395 Sum_probs=77.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 180 (479)
+.+|||+|||+++|+++|+++|++||.|.+|.++.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred c
Q 011693 181 K 181 (479)
Q Consensus 181 ~ 181 (479)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 68
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.78 E-value=3.9e-19 Score=137.05 Aligned_cols=84 Identities=29% Similarity=0.619 Sum_probs=80.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 180 (479)
+++|||+|||+++|+++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccc
Q 011693 181 KYRL 184 (479)
Q Consensus 181 ~~~l 184 (479)
+...
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 6554
No 69
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.4e-19 Score=135.69 Aligned_cols=83 Identities=31% Similarity=0.532 Sum_probs=79.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
+...++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 011693 178 SQA 180 (479)
Q Consensus 178 ~~~ 180 (479)
+.+
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 864
No 70
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=5e-19 Score=137.10 Aligned_cols=86 Identities=26% Similarity=0.399 Sum_probs=79.3
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCC---CCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEE
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKP---GQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~---~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 350 (479)
+.++|||+|||+++|+++|+++|++||.|..|+|+.++. ++.++|||||+|.+.++|.+||..||+..|.|++|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 348999999999999999999999999999999999876 55779999999999999999999999999999999999
Q ss_pred eccCCCccC
Q 011693 351 LAKPQADQK 359 (479)
Q Consensus 351 ~a~~~~~~~ 359 (479)
++.++....
T Consensus 84 ~a~~~~~~~ 92 (98)
T 2cpf_A 84 ISERATKPA 92 (98)
T ss_dssp CSSCSSCCC
T ss_pred EccCCCCCC
Confidence 998876543
No 71
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.7e-18 Score=135.59 Aligned_cols=85 Identities=22% Similarity=0.433 Sum_probs=79.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCC-CCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG-QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~-~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
.+.++|||+|||+++|+++|+++|++|| |.+|+|+.++.+ +.++|||||+|.+.++|.+|| .||+..|.|++|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4458999999999999999999999999 999999999987 888999999999999999999 8999999999999999
Q ss_pred ccCCCccC
Q 011693 352 AKPQADQK 359 (479)
Q Consensus 352 a~~~~~~~ 359 (479)
+.++....
T Consensus 91 a~~~~~~~ 98 (104)
T 1wi8_A 91 ADQAQDKD 98 (104)
T ss_dssp CCCCCCCC
T ss_pred ccCCCCCC
Confidence 98876543
No 72
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.4e-18 Score=133.67 Aligned_cols=86 Identities=26% Similarity=0.370 Sum_probs=78.7
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
....++|||+|||+++|+++|+++|++||.|.+|+|+.++.+ ++|||||+|.+.++|.+||..||+..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 344589999999999999999999999999999999998755 479999999999999999999999999999999999
Q ss_pred ccCCCccC
Q 011693 352 AKPQADQK 359 (479)
Q Consensus 352 a~~~~~~~ 359 (479)
+.++..+.
T Consensus 90 a~~~~~~~ 97 (103)
T 2cqi_A 90 ATTPSSQK 97 (103)
T ss_dssp CCCTTCCC
T ss_pred CCCCcccc
Confidence 98876544
No 73
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.9e-18 Score=132.97 Aligned_cols=81 Identities=20% Similarity=0.357 Sum_probs=76.1
Q ss_pred cccEEEEcCCCCCCCHHHHH----HHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEE
Q 011693 274 QVKAVYVKNLPRNVTQDQLK----KLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~----~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 349 (479)
..++|||+|||+++++++|+ ++|++||.|.+|+|+.++.+ +|||||+|.+.++|.+||..||+..|.|++|+|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34899999999999999999 99999999999999999877 689999999999999999999999999999999
Q ss_pred EeccCCCc
Q 011693 350 SLAKPQAD 357 (479)
Q Consensus 350 ~~a~~~~~ 357 (479)
.++++...
T Consensus 85 ~~a~~~~~ 92 (96)
T 2dgx_A 85 SLATGASG 92 (96)
T ss_dssp EECCCSSC
T ss_pred EEcCCCCC
Confidence 99987654
No 74
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.78 E-value=1.2e-18 Score=138.07 Aligned_cols=86 Identities=13% Similarity=0.224 Sum_probs=80.9
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
....++|||+|||+++|+++|+++|++||.|.+|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|++|+|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCc
Q 011693 352 AKPQAD 357 (479)
Q Consensus 352 a~~~~~ 357 (479)
+.++..
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 987654
No 75
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=1.5e-18 Score=135.68 Aligned_cols=86 Identities=24% Similarity=0.334 Sum_probs=79.5
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
..+.++|||+|||+++|+++|+++|++|| |.+|+|+.++.++.++|||||+|.+.++|.+|| .||+..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34458999999999999999999999997 999999999999999999999999999999999 8999999999999999
Q ss_pred ccCCCccC
Q 011693 352 AKPQADQK 359 (479)
Q Consensus 352 a~~~~~~~ 359 (479)
+.++....
T Consensus 90 a~~~~~~~ 97 (103)
T 2dng_A 90 AEGRKQDK 97 (103)
T ss_dssp CCCCCCCC
T ss_pred ecCCCCCC
Confidence 98876543
No 76
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=6.9e-19 Score=135.17 Aligned_cols=83 Identities=33% Similarity=0.571 Sum_probs=78.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEe
Q 011693 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (479)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~ 176 (479)
.++..++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecc
Q 011693 177 TSQ 179 (479)
Q Consensus 177 ~~~ 179 (479)
+++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 873
No 77
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=138.37 Aligned_cols=87 Identities=23% Similarity=0.335 Sum_probs=81.1
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeE--------EEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceec
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRIT--------KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD 343 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~--------~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~ 343 (479)
....++|||+|||+++|+++|+++|++||.|. .|+|+.++.++.++|||||+|.+.++|.+||..||+..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34558999999999999999999999999999 6999999988999999999999999999999999999999
Q ss_pred CeEEEEEeccCCCcc
Q 011693 344 GQALECSLAKPQADQ 358 (479)
Q Consensus 344 g~~l~v~~a~~~~~~ 358 (479)
|++|+|.+++++...
T Consensus 92 g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 92 GSKLKVSLARKKPPM 106 (113)
T ss_dssp TEECEEECSSCCCCS
T ss_pred CCEEEEEECCCCCCC
Confidence 999999999887643
No 78
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.78 E-value=9.2e-19 Score=127.76 Aligned_cols=73 Identities=18% Similarity=0.220 Sum_probs=69.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEecc
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (479)
+..|||+||++.+|+++|+++|.+||.|.++++.. +||||||+|.+.++|.+|++.||+..|.|++|+|++|+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 47899999999999999999999999999999977 37999999999999999999999999999999999995
No 79
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.1e-18 Score=133.85 Aligned_cols=86 Identities=23% Similarity=0.380 Sum_probs=79.0
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
....++|||+|||+++|+++|+++|++||.|.+|+|+.++.+ ++|||||+|.+.++|.+||..||+..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT--TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 344589999999999999999999999999999999998765 589999999999999999999999999999999999
Q ss_pred ccCCCccC
Q 011693 352 AKPQADQK 359 (479)
Q Consensus 352 a~~~~~~~ 359 (479)
+.++....
T Consensus 90 a~~~~~~~ 97 (103)
T 2cq3_A 90 ATARVMTN 97 (103)
T ss_dssp CCSSCCCC
T ss_pred cccCCCCC
Confidence 98876543
No 80
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=136.66 Aligned_cols=87 Identities=30% Similarity=0.439 Sum_probs=79.9
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
....++|||+|||+++|+++|+++|++||.|..|+|+.+ ++.++|||||+|.+.++|.+||..||+..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 345689999999999999999999999999999999998 667799999999999999999999999999999999999
Q ss_pred ccCCCccCC
Q 011693 352 AKPQADQKS 360 (479)
Q Consensus 352 a~~~~~~~~ 360 (479)
+.++..+..
T Consensus 90 a~~~~~~~~ 98 (103)
T 2d9p_A 90 AQRKEERQS 98 (103)
T ss_dssp CSSCCCCCC
T ss_pred ecccccCCC
Confidence 998775543
No 81
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.2e-19 Score=137.30 Aligned_cols=86 Identities=26% Similarity=0.597 Sum_probs=80.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEe
Q 011693 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (479)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~ 176 (479)
...+.++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccc
Q 011693 177 TSQAKY 182 (479)
Q Consensus 177 ~~~~~~ 182 (479)
++.+..
T Consensus 88 ~a~~~~ 93 (102)
T 1x5s_A 88 QAGKSS 93 (102)
T ss_dssp EEECCC
T ss_pred ECCCCC
Confidence 987653
No 82
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.78 E-value=1.5e-18 Score=136.33 Aligned_cols=86 Identities=16% Similarity=0.286 Sum_probs=79.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecC---eEEEE
Q 011693 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG---QALEC 349 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g---~~l~v 349 (479)
...++|||+|||+++|+++|+++|++||.|..|+|+.++ ++.++|||||+|.+.++|.+||..||+..|.+ ++|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 446899999999999999999999999999999999998 56779999999999999999999999999998 99999
Q ss_pred EeccCCCccC
Q 011693 350 SLAKPQADQK 359 (479)
Q Consensus 350 ~~a~~~~~~~ 359 (479)
.++.++..+.
T Consensus 92 ~~a~~~~~~~ 101 (105)
T 2dnh_A 92 KFADTDKESG 101 (105)
T ss_dssp EESCSSCCCS
T ss_pred EECccCcccC
Confidence 9999877554
No 83
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.78 E-value=1.9e-18 Score=137.75 Aligned_cols=83 Identities=24% Similarity=0.416 Sum_probs=78.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccC
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (479)
.++|||+|||+++|+++|+++|++||.|.+|.|+.++ ++.++|||||+|.+.++|.+||..||+..|.|+.|+|.++++
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp CCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 4899999999999999999999999999999999998 777799999999999999999999999999999999999987
Q ss_pred CCcc
Q 011693 355 QADQ 358 (479)
Q Consensus 355 ~~~~ 358 (479)
+...
T Consensus 86 ~~~~ 89 (116)
T 2fy1_A 86 PSFQ 89 (116)
T ss_dssp SSCS
T ss_pred CCCC
Confidence 6543
No 84
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=135.55 Aligned_cols=84 Identities=26% Similarity=0.639 Sum_probs=79.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
....++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||+ +++..|.|+.|+|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 4567999999999999999999999999999999999999999999999999999999999997 999999999999999
Q ss_pred ccccc
Q 011693 178 SQAKY 182 (479)
Q Consensus 178 ~~~~~ 182 (479)
+.++.
T Consensus 86 a~~~~ 90 (99)
T 2dgs_A 86 AEPRD 90 (99)
T ss_dssp CCCCC
T ss_pred CCCCc
Confidence 98654
No 85
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.4e-19 Score=134.49 Aligned_cols=80 Identities=15% Similarity=0.270 Sum_probs=73.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhC--CceecCeEEEEEe
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE--KYELDGQALECSL 351 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~--~~~~~g~~l~v~~ 351 (479)
+.++|||+|||+++|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|+..|+ +..|.|++|+|.+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 3489999999999999999999999999999999986 5999999999999999999886 4789999999999
Q ss_pred ccCCCccC
Q 011693 352 AKPQADQK 359 (479)
Q Consensus 352 a~~~~~~~ 359 (479)
++++....
T Consensus 89 A~~~~~~~ 96 (105)
T 1sjq_A 89 SNHKELKT 96 (105)
T ss_dssp CSSSSCCC
T ss_pred cCCCCCCc
Confidence 98876544
No 86
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.9e-19 Score=137.55 Aligned_cols=85 Identities=27% Similarity=0.444 Sum_probs=80.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
+...++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 44679999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccccc
Q 011693 178 SQAKY 182 (479)
Q Consensus 178 ~~~~~ 182 (479)
+.+..
T Consensus 92 a~~~~ 96 (105)
T 1x5u_A 92 ASAHN 96 (105)
T ss_dssp TTTTS
T ss_pred CCCCC
Confidence 98754
No 87
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.78 E-value=2.2e-19 Score=136.58 Aligned_cols=80 Identities=24% Similarity=0.464 Sum_probs=72.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcC--CeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 011693 102 SEVYIGGIPHDASEHDLRDFCQSIG--EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (479)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 179 (479)
.+|||+|||+++|+++|+++|++|| .|.+|+|+.++.+|+++|||||+|.+.++|.+|++.|++..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999999887
Q ss_pred cc
Q 011693 180 AK 181 (479)
Q Consensus 180 ~~ 181 (479)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 64
No 88
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.78 E-value=2.2e-19 Score=139.34 Aligned_cols=82 Identities=21% Similarity=0.234 Sum_probs=78.5
Q ss_pred ccEEEEcCCCC------CCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecC-eEE
Q 011693 275 VKAVYVKNLPR------NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG-QAL 347 (479)
Q Consensus 275 ~~~l~V~nLp~------~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g-~~l 347 (479)
.++|||+|||+ ++++++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|.+||..||+..|.| ++|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 48999999999 99999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEEeccCCC
Q 011693 348 ECSLAKPQA 356 (479)
Q Consensus 348 ~v~~a~~~~ 356 (479)
+|.++.+..
T Consensus 86 ~V~~a~~~~ 94 (100)
T 3ns6_A 86 FLYTMKDVE 94 (100)
T ss_dssp EEEESHHHH
T ss_pred EEEECchhh
Confidence 999998754
No 89
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.78 E-value=1.6e-19 Score=140.08 Aligned_cols=83 Identities=17% Similarity=0.266 Sum_probs=78.9
Q ss_pred CCceEEEcCCCC------CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCC-eE
Q 011693 100 HGSEVYIGGIPH------DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG-KK 172 (479)
Q Consensus 100 ~~~~l~V~nLp~------~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g-~~ 172 (479)
.+++|||+|||+ ++++++|+++|++||.|.+|+|++++.|++++|||||+|.+.++|.+||+.||+..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 368999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEeeccccc
Q 011693 173 IRCSTSQAKY 182 (479)
Q Consensus 173 i~v~~~~~~~ 182 (479)
|+|.++.+..
T Consensus 85 l~V~~a~~~~ 94 (100)
T 3ns6_A 85 LFLYTMKDVE 94 (100)
T ss_dssp CEEEESHHHH
T ss_pred EEEEECchhh
Confidence 9999987643
No 90
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.78 E-value=9e-19 Score=139.91 Aligned_cols=85 Identities=24% Similarity=0.461 Sum_probs=80.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
.+..++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+||+.|++..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 011693 178 SQAKY 182 (479)
Q Consensus 178 ~~~~~ 182 (479)
+.++.
T Consensus 102 a~~~~ 106 (115)
T 2cpz_A 102 KRSKN 106 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 88654
No 91
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=135.11 Aligned_cols=84 Identities=24% Similarity=0.541 Sum_probs=79.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
....++|||+|||+++|+++|+++|++||.|..|+|+.++ +++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4467899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ccccc
Q 011693 178 SQAKY 182 (479)
Q Consensus 178 ~~~~~ 182 (479)
+.++.
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 87653
No 92
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.2e-19 Score=135.68 Aligned_cols=84 Identities=25% Similarity=0.457 Sum_probs=79.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEE-EEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEV-RIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v-~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
...++|||+|||+++|+++|+++|++||.|..| +|++++.++.++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457999999999999999999999999999999 9999989999999999999999999999999999999999999999
Q ss_pred ccccc
Q 011693 178 SQAKY 182 (479)
Q Consensus 178 ~~~~~ 182 (479)
+.++.
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 87653
No 93
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1e-18 Score=137.42 Aligned_cols=85 Identities=13% Similarity=0.212 Sum_probs=80.2
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
....++|||+|||+++|+++|+++|++||.|.+|.|+.++.++.++|||||+|.+.++|.+|+..||+..|.|++|+|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 011693 352 AKPQA 356 (479)
Q Consensus 352 a~~~~ 356 (479)
+.++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98764
No 94
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=7.2e-19 Score=137.53 Aligned_cols=85 Identities=20% Similarity=0.428 Sum_probs=80.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
....++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+||+.|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 44579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 011693 178 SQAKY 182 (479)
Q Consensus 178 ~~~~~ 182 (479)
+.++.
T Consensus 92 a~~~~ 96 (103)
T 2cq0_A 92 AKPST 96 (103)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 97653
No 95
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=6.8e-19 Score=137.65 Aligned_cols=85 Identities=21% Similarity=0.343 Sum_probs=80.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
....++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+||+.|++..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 44579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 011693 178 SQAKY 182 (479)
Q Consensus 178 ~~~~~ 182 (479)
+.+..
T Consensus 90 a~~~~ 94 (103)
T 2dnm_A 90 ARYGR 94 (103)
T ss_dssp CSSCC
T ss_pred CCcCC
Confidence 98643
No 96
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.77 E-value=1.5e-19 Score=137.51 Aligned_cols=82 Identities=20% Similarity=0.241 Sum_probs=72.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcC--CeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEecc
Q 011693 276 KAVYVKNLPRNVTQDQLKKLFEHHG--RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l~~~F~~~G--~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (479)
.+|||+|||+++|+++|+++|++|| .|.+|+|+.++.++.++|||||+|.+.++|.+||+.||+..|.|++|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred CCCc
Q 011693 354 PQAD 357 (479)
Q Consensus 354 ~~~~ 357 (479)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7654
No 97
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.77 E-value=1.6e-18 Score=138.45 Aligned_cols=85 Identities=22% Similarity=0.447 Sum_probs=80.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
....++|||+|||+++|+++|+++|+.||.|..|+|+.++.+++++|||||+|.+.++|.+||+.|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44679999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccccc
Q 011693 178 SQAKY 182 (479)
Q Consensus 178 ~~~~~ 182 (479)
+.++.
T Consensus 92 a~~~~ 96 (115)
T 2dgo_A 92 ATRKP 96 (115)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 98654
No 98
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=134.96 Aligned_cols=84 Identities=21% Similarity=0.431 Sum_probs=79.5
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeE--------EEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCc
Q 011693 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTE--------VRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE 167 (479)
Q Consensus 96 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~ 167 (479)
..++..++|||+|||+++|+++|+++|++||.|.. |+|+.++.+++++|||||+|.+.++|.+|++.|++..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 44667899999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred cCCeEEEEeecc
Q 011693 168 FKGKKIRCSTSQ 179 (479)
Q Consensus 168 ~~g~~i~v~~~~ 179 (479)
|.|+.|+|.+++
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999998873
No 99
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=136.23 Aligned_cols=86 Identities=23% Similarity=0.429 Sum_probs=80.5
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
....++|||+|||+++|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|.+||.. |+..|.|++|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 34558999999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred ccCCCcc
Q 011693 352 AKPQADQ 358 (479)
Q Consensus 352 a~~~~~~ 358 (479)
+.++...
T Consensus 92 a~~~~~~ 98 (105)
T 2dh8_A 92 CTPRGMQ 98 (105)
T ss_dssp SCCSSCC
T ss_pred ccCCCCC
Confidence 9887654
No 100
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=131.76 Aligned_cols=79 Identities=22% Similarity=0.330 Sum_probs=72.2
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCce--ecCeEEEE
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE--LDGQALEC 349 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~--~~g~~l~v 349 (479)
..++++|||+|||+++|+++|+++|++||.|.+|+|++. ||||||+|.+.++|.+|+..|++.. |.|++|+|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 345689999999999999999999999999999999864 6999999999999999999998764 78999999
Q ss_pred EeccCCC
Q 011693 350 SLAKPQA 356 (479)
Q Consensus 350 ~~a~~~~ 356 (479)
.|++++.
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998765
No 101
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=7.6e-19 Score=137.15 Aligned_cols=85 Identities=27% Similarity=0.526 Sum_probs=80.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
+...++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 011693 178 SQAKY 182 (479)
Q Consensus 178 ~~~~~ 182 (479)
+.+..
T Consensus 89 a~~~~ 93 (102)
T 2cqb_A 89 AKPMR 93 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 102
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=134.91 Aligned_cols=83 Identities=22% Similarity=0.319 Sum_probs=78.2
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEE--------EEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCcee
Q 011693 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITK--------VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL 342 (479)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--------v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~ 342 (479)
...+.++|||+|||+++|+++|+++|++||.|.. |+|+.++.++.++|||||+|.+.++|.+|++.||+..|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3445689999999999999999999999999999 99999999899999999999999999999999999999
Q ss_pred cCeEEEEEecc
Q 011693 343 DGQALECSLAK 353 (479)
Q Consensus 343 ~g~~l~v~~a~ 353 (479)
.|++|+|.+|+
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999974
No 103
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=132.19 Aligned_cols=82 Identities=26% Similarity=0.409 Sum_probs=77.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCC-cccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEecc
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE-KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~-~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (479)
.++|||+|||+++|+++|+++|++||.|.+|.|+.++.++. ++|||||+|.+.++|.+|+..||+..|.|+.|+|.++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 37999999999999999999999999999999999987655 78999999999999999999999999999999999997
Q ss_pred CCC
Q 011693 354 PQA 356 (479)
Q Consensus 354 ~~~ 356 (479)
++.
T Consensus 84 ~~~ 86 (88)
T 4a8x_A 84 APW 86 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 104
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=137.09 Aligned_cols=85 Identities=26% Similarity=0.458 Sum_probs=80.2
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
....++|||+|||.++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..||+..|.|++|+|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34458999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred ccCCC
Q 011693 352 AKPQA 356 (479)
Q Consensus 352 a~~~~ 356 (479)
++++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98764
No 105
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=137.41 Aligned_cols=84 Identities=24% Similarity=0.559 Sum_probs=80.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
++..++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.+++..|.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 011693 178 SQAK 181 (479)
Q Consensus 178 ~~~~ 181 (479)
+.++
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 8764
No 106
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=137.49 Aligned_cols=86 Identities=23% Similarity=0.431 Sum_probs=80.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhC------CCccCC
Q 011693 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN------NTEFKG 170 (479)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~------~~~~~g 170 (479)
.+...++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||+.++ +..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred eEEEEeeccccc
Q 011693 171 KKIRCSTSQAKY 182 (479)
Q Consensus 171 ~~i~v~~~~~~~ 182 (479)
+.|+|.++.++.
T Consensus 91 ~~l~v~~a~~~~ 102 (111)
T 1x4h_A 91 RQLKVDLAVTRD 102 (111)
T ss_dssp CEEEEECCCCCC
T ss_pred EEEEEEECCCCc
Confidence 999999987653
No 107
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=136.27 Aligned_cols=86 Identities=20% Similarity=0.260 Sum_probs=79.8
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhh-cCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCce-ecCeEEEEE
Q 011693 273 SQVKAVYVKNLPRNVTQDQLKKLFEH-HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE-LDGQALECS 350 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~-~~g~~l~v~ 350 (479)
.+.++|||+|||+++|+++|+++|++ ||.|.+|+|+.++ ++.++|||||+|.+.++|.+||..||+.. |.|++|+|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 34589999999999999999999999 9999999999998 77789999999999999999999999999 999999999
Q ss_pred eccCCCccC
Q 011693 351 LAKPQADQK 359 (479)
Q Consensus 351 ~a~~~~~~~ 359 (479)
++.++..+.
T Consensus 86 ~a~~~~~~~ 94 (104)
T 2dhg_A 86 VAIPKASRV 94 (104)
T ss_dssp BCCCCCSCC
T ss_pred EccCCCcCC
Confidence 998776543
No 108
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1e-18 Score=135.34 Aligned_cols=84 Identities=24% Similarity=0.428 Sum_probs=78.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC---CCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Q 011693 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKD---SSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~---~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v 175 (479)
.+.++|||+|||+++|+++|+++|++||.|..|.|+.++. |++++|||||+|.+.++|.+|++.|++..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4579999999999999999999999999999999999876 6699999999999999999999999999999999999
Q ss_pred eeccccc
Q 011693 176 STSQAKY 182 (479)
Q Consensus 176 ~~~~~~~ 182 (479)
.++.+..
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9987654
No 109
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=4.7e-18 Score=135.58 Aligned_cols=85 Identities=20% Similarity=0.264 Sum_probs=78.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEec
Q 011693 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
...++|||+|||+++|+++|+++|++||.|.+|+|+.++. +.++|||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-CSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 3458999999999999999999999999999999999985 667999999999999999999999999999999999999
Q ss_pred cCCCcc
Q 011693 353 KPQADQ 358 (479)
Q Consensus 353 ~~~~~~ 358 (479)
.....+
T Consensus 92 ~~~~~~ 97 (114)
T 2do0_A 92 ERALPK 97 (114)
T ss_dssp SCCCCC
T ss_pred ccCCCC
Confidence 765443
No 110
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.77 E-value=2.1e-18 Score=130.38 Aligned_cols=80 Identities=24% Similarity=0.579 Sum_probs=75.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
+...++|||+|||+++|+++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|.+|++ +++..|.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 4567999999999999999999999999999999999999999999999999999999999995 688899999999986
Q ss_pred c
Q 011693 178 S 178 (479)
Q Consensus 178 ~ 178 (479)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 111
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.9e-18 Score=133.33 Aligned_cols=83 Identities=20% Similarity=0.412 Sum_probs=75.4
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
....++|||+|||+++|+++|+++|++||.|..|.|..+. .++|||||+|.+.++|.+||+.||+..|.|++|+|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR---GGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS---SSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3445899999999999999999999999999999997654 3589999999999999999999999999999999999
Q ss_pred ccCCCc
Q 011693 352 AKPQAD 357 (479)
Q Consensus 352 a~~~~~ 357 (479)
+++...
T Consensus 96 a~~~~~ 101 (109)
T 1x4a_A 96 PRSGRG 101 (109)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 987654
No 112
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=136.35 Aligned_cols=83 Identities=20% Similarity=0.418 Sum_probs=79.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeec
Q 011693 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 178 (479)
...++|||+|||+++|+++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 011693 179 QAK 181 (479)
Q Consensus 179 ~~~ 181 (479)
.++
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 754
No 113
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=142.09 Aligned_cols=86 Identities=17% Similarity=0.261 Sum_probs=79.9
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEE--EEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCc----eecCe
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITK--VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY----ELDGQ 345 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~----~~~g~ 345 (479)
....++|||+|||+++|+++|+++|++||.|.. |+|++++.++.+||||||+|.+. +|.+||..||+. .|.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345689999999999999999999999999977 99999999999999999999999 999999999999 99999
Q ss_pred EEEEEeccCCCcc
Q 011693 346 ALECSLAKPQADQ 358 (479)
Q Consensus 346 ~l~v~~a~~~~~~ 358 (479)
+|+|.++.+....
T Consensus 99 ~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 99 TINVEFAKGSKRD 111 (131)
T ss_dssp CCCCEECCCSCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999886543
No 114
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1e-18 Score=135.74 Aligned_cols=80 Identities=24% Similarity=0.437 Sum_probs=75.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeec
Q 011693 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 178 (479)
...++|||+|||+++|+++|+++|++||.|.+|.|++++. ++++|||||+|.+.++|.+||+ +++..|.|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3468999999999999999999999999999999999987 9999999999999999999997 8999999999999877
Q ss_pred cc
Q 011693 179 QA 180 (479)
Q Consensus 179 ~~ 180 (479)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 115
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2e-18 Score=138.17 Aligned_cols=86 Identities=21% Similarity=0.410 Sum_probs=80.4
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
....++|||+|||+++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+||.. ++..|.|++|+|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 34468999999999999999999999999999999999999888999999999999999999997 99999999999999
Q ss_pred ccCCCcc
Q 011693 352 AKPQADQ 358 (479)
Q Consensus 352 a~~~~~~ 358 (479)
+.++...
T Consensus 103 a~~~~~~ 109 (116)
T 1x4b_A 103 AVAREES 109 (116)
T ss_dssp CSSCCCC
T ss_pred CCCCccC
Confidence 9887653
No 116
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.77 E-value=2.1e-18 Score=140.31 Aligned_cols=87 Identities=13% Similarity=0.203 Sum_probs=81.3
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
....++|||+|||+++|+++|+++|++||.|.+|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 33458999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccCCCcc
Q 011693 352 AKPQADQ 358 (479)
Q Consensus 352 a~~~~~~ 358 (479)
+.++...
T Consensus 99 a~~~~~~ 105 (126)
T 3ex7_B 99 CFVRGPP 105 (126)
T ss_dssp SEESSSC
T ss_pred ecCCCCC
Confidence 9877644
No 117
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.77 E-value=1.2e-18 Score=141.45 Aligned_cols=86 Identities=33% Similarity=0.510 Sum_probs=81.2
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Q 011693 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (479)
Q Consensus 96 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v 175 (479)
..+...++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.|++..|.|+.|+|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccc
Q 011693 176 STSQAK 181 (479)
Q Consensus 176 ~~~~~~ 181 (479)
.++.++
T Consensus 121 ~~a~~~ 126 (129)
T 2kxn_B 121 DFSITK 126 (129)
T ss_dssp SCCSSS
T ss_pred EEecCC
Confidence 998765
No 118
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.6e-18 Score=133.20 Aligned_cols=80 Identities=23% Similarity=0.327 Sum_probs=72.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhC--CCccCCeEEE
Q 011693 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN--NTEFKGKKIR 174 (479)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~--~~~~~g~~i~ 174 (479)
.++..++|||+|||+++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.++ +..|.|+.|.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3567899999999999999999999999999999999875 7999999999999999999886 4789999999
Q ss_pred Eeeccccc
Q 011693 175 CSTSQAKY 182 (479)
Q Consensus 175 v~~~~~~~ 182 (479)
|.++.++.
T Consensus 86 V~~A~~~~ 93 (105)
T 1sjq_A 86 IQFSNHKE 93 (105)
T ss_dssp BCCCSSSS
T ss_pred EEEcCCCC
Confidence 99997653
No 119
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.76 E-value=2.4e-18 Score=130.70 Aligned_cols=80 Identities=16% Similarity=0.363 Sum_probs=76.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccC
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (479)
.++|||+|||+++|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|.+|+ .||+..|.|++|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 379999999999999999999999999999999999988888999999999999999999 8999999999999999976
Q ss_pred C
Q 011693 355 Q 355 (479)
Q Consensus 355 ~ 355 (479)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 120
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-18 Score=139.07 Aligned_cols=86 Identities=16% Similarity=0.320 Sum_probs=80.4
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEec
Q 011693 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
...++|||+|||+++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|| .||+..|.|+.|+|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34689999999999999999999999999999999999998888999999999999999999 89999999999999999
Q ss_pred cCCCccC
Q 011693 353 KPQADQK 359 (479)
Q Consensus 353 ~~~~~~~ 359 (479)
.++..+.
T Consensus 102 ~~~~~~~ 108 (114)
T 2cq4_A 102 QAEKNRL 108 (114)
T ss_dssp HHHHHHH
T ss_pred CCCccCC
Confidence 8766543
No 121
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.76 E-value=1.9e-18 Score=147.39 Aligned_cols=84 Identities=21% Similarity=0.377 Sum_probs=79.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
....++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|++..|.|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 011693 178 SQAK 181 (479)
Q Consensus 178 ~~~~ 181 (479)
+.++
T Consensus 149 a~~~ 152 (165)
T 1rk8_A 149 CFVK 152 (165)
T ss_dssp SEEC
T ss_pred ecCC
Confidence 8754
No 122
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.76 E-value=1.8e-18 Score=136.11 Aligned_cols=85 Identities=25% Similarity=0.451 Sum_probs=80.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCcc---CCeEEE
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF---KGKKIR 174 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~---~g~~i~ 174 (479)
+...++|||+|||+++|+++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999988 899999
Q ss_pred Eeeccccc
Q 011693 175 CSTSQAKY 182 (479)
Q Consensus 175 v~~~~~~~ 182 (479)
|.++.+..
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99998654
No 123
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.76 E-value=1.6e-18 Score=140.82 Aligned_cols=85 Identities=20% Similarity=0.298 Sum_probs=80.4
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
..+.++|||+|||+++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+||..||+..|.|++|+|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred ccCCC
Q 011693 352 AKPQA 356 (479)
Q Consensus 352 a~~~~ 356 (479)
+.++.
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 98765
No 124
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.6e-18 Score=134.45 Aligned_cols=84 Identities=17% Similarity=0.254 Sum_probs=79.3
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhhcCCeE-EEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeE----E
Q 011693 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRIT-KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQA----L 347 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~-~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~----l 347 (479)
...++|||+|||+++|+++|+++|++||.|. +|+|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3458999999999999999999999999999 9999999999999999999999999999999999999999999 9
Q ss_pred EEEeccCCC
Q 011693 348 ECSLAKPQA 356 (479)
Q Consensus 348 ~v~~a~~~~ 356 (479)
+|.++++..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999997764
No 125
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3.1e-18 Score=134.99 Aligned_cols=86 Identities=24% Similarity=0.492 Sum_probs=80.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeC-CCCCCCcceEEEEeCCHHHHHHHHHHh-CCCccCCeEEEE
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKG-KDSSENKGFAFVTFRNVELASKAIDKL-NNTEFKGKKIRC 175 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~-~~~g~~~g~afV~F~~~~~A~~a~~~~-~~~~~~g~~i~v 175 (479)
....++|||+|||+++|+++|+++|++||.|..|+|+.+ +.+++++|||||+|.+.++|.+||+.| ++..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 345799999999999999999999999999999999999 788999999999999999999999999 999999999999
Q ss_pred eecccccc
Q 011693 176 STSQAKYR 183 (479)
Q Consensus 176 ~~~~~~~~ 183 (479)
.++.++..
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99987654
No 126
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.76 E-value=1.4e-17 Score=134.86 Aligned_cols=87 Identities=28% Similarity=0.428 Sum_probs=80.4
Q ss_pred CCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEE
Q 011693 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (479)
Q Consensus 270 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 349 (479)
......++|||+|||.++++++|+++|++||.|.+|+|+.++ ++.++|||||+|.+.++|.+|+..||+..|.|++|+|
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 344556899999999999999999999999999999999998 7777999999999999999999999999999999999
Q ss_pred EeccCCCc
Q 011693 350 SLAKPQAD 357 (479)
Q Consensus 350 ~~a~~~~~ 357 (479)
.+|.+...
T Consensus 109 ~~a~~~~~ 116 (124)
T 2kt5_A 109 QLVASQID 116 (124)
T ss_dssp EEECCTTC
T ss_pred EEeCCCCC
Confidence 99987654
No 127
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.76 E-value=2.5e-18 Score=132.33 Aligned_cols=82 Identities=28% Similarity=0.442 Sum_probs=77.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
+...++|||+|||+++|+++|+++|++||.|.+|+|+.++. ++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34568999999999999999999999999999999999986 99999999999999999999999999999999999998
Q ss_pred ccc
Q 011693 178 SQA 180 (479)
Q Consensus 178 ~~~ 180 (479)
+.+
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 763
No 128
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.76 E-value=3.2e-18 Score=131.75 Aligned_cols=82 Identities=26% Similarity=0.361 Sum_probs=76.5
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
....++|||+|||+++++++|+++|++||.|.+|+|+.++. +.++|||||+|.+.++|.+|+..||+..|.|++|+|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34458999999999999999999999999999999999987 66799999999999999999999999999999999999
Q ss_pred ccC
Q 011693 352 AKP 354 (479)
Q Consensus 352 a~~ 354 (479)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 129
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.1e-18 Score=133.84 Aligned_cols=84 Identities=18% Similarity=0.388 Sum_probs=79.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCee-EEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeE----
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVT-EVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKK---- 172 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~-~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~---- 172 (479)
....++|||+|||+++|+++|+++|++||.|. +|+|++++.+++++|||||+|.+.++|.+|++.|++..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34579999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEEeecccc
Q 011693 173 IRCSTSQAK 181 (479)
Q Consensus 173 i~v~~~~~~ 181 (479)
|+|.++.+.
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999988754
No 130
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.76 E-value=2.9e-18 Score=130.26 Aligned_cols=80 Identities=25% Similarity=0.524 Sum_probs=77.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 180 (479)
.++|||+|||+++|+++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|.+|+ .+++..|.|+.|+|.++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 589999999999999999999999999999999999999999999999999999999999 9999999999999999876
Q ss_pred c
Q 011693 181 K 181 (479)
Q Consensus 181 ~ 181 (479)
+
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 131
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.76 E-value=2.2e-18 Score=144.62 Aligned_cols=82 Identities=21% Similarity=0.416 Sum_probs=77.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcC--CeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIG--EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
..++|||+|||+++|+++|+++|+.|| .|.+|+|+.|+.+|+++|||||+|.+.++|.+||+.|++..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 011693 178 SQAK 181 (479)
Q Consensus 178 ~~~~ 181 (479)
+.+.
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8754
No 132
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.6e-18 Score=134.55 Aligned_cols=79 Identities=22% Similarity=0.309 Sum_probs=74.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEecc
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (479)
..++|||+|||+++|+++|+++|++||.|.+|+|+.++. +.++|||||+|.+.++|.+||. +++..|.|+.|.|.++.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 348999999999999999999999999999999999988 7779999999999999999999 89999999999999986
Q ss_pred C
Q 011693 354 P 354 (479)
Q Consensus 354 ~ 354 (479)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 5
No 133
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.9e-18 Score=131.88 Aligned_cols=78 Identities=18% Similarity=0.216 Sum_probs=71.2
Q ss_pred cccEEEEcCCCC-CCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCC--ceecCeEEEEE
Q 011693 274 QVKAVYVKNLPR-NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK--YELDGQALECS 350 (479)
Q Consensus 274 ~~~~l~V~nLp~-~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~--~~~~g~~l~v~ 350 (479)
++++|||+|||+ ++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+||..||+ ..|.|++|+|.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 468999999999 9999999999999999999999986 48999999999999999999885 45999999999
Q ss_pred eccCCCc
Q 011693 351 LAKPQAD 357 (479)
Q Consensus 351 ~a~~~~~ 357 (479)
+|+....
T Consensus 88 ~a~~~~~ 94 (102)
T 1x4d_A 88 LSQKYKR 94 (102)
T ss_dssp EECCCTT
T ss_pred ECCCCCC
Confidence 9986543
No 134
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1e-17 Score=129.04 Aligned_cols=82 Identities=15% Similarity=0.263 Sum_probs=74.2
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHh--CCceecCeEEEE
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT--EKYELDGQALEC 349 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l--~~~~~~g~~l~v 349 (479)
..++++|||+|||+.+|+++|+++|++||.|.+|.|+++ ||||||+|.+.++|.+|+..| ++..|.|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 345689999999999999999999999999999999876 699999999999999999977 467899999999
Q ss_pred EeccCCCccC
Q 011693 350 SLAKPQADQK 359 (479)
Q Consensus 350 ~~a~~~~~~~ 359 (479)
.|++++....
T Consensus 86 ~~a~~~~~~~ 95 (101)
T 2cq1_A 86 QYSNHKELKT 95 (101)
T ss_dssp EECSCSSCCC
T ss_pred EEcCcccCcC
Confidence 9998877654
No 135
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.76 E-value=3.3e-18 Score=137.38 Aligned_cols=82 Identities=23% Similarity=0.353 Sum_probs=77.4
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
....++|||+|||+++|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|.+||+.||+..|.|++|+|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 44568999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred cc
Q 011693 352 AK 353 (479)
Q Consensus 352 a~ 353 (479)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 136
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.3e-17 Score=131.41 Aligned_cols=79 Identities=16% Similarity=0.258 Sum_probs=73.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecC-----eEEE
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG-----QALE 348 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g-----~~l~ 348 (479)
..++|||+|||+++|+++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||+.||+..|.| ++|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 3589999999999999999999999999999999986 799999999999999999999999999 9999
Q ss_pred EEeccCCCccC
Q 011693 349 CSLAKPQADQK 359 (479)
Q Consensus 349 v~~a~~~~~~~ 359 (479)
|.++.++....
T Consensus 87 V~~a~~~~~~~ 97 (108)
T 1x4c_A 87 VKVDGPRSPSY 97 (108)
T ss_dssp EEESSCCSCCC
T ss_pred EEeCCCCCCCC
Confidence 99999866443
No 137
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.76 E-value=3.4e-18 Score=136.32 Aligned_cols=84 Identities=29% Similarity=0.561 Sum_probs=79.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
....++|||+|||+++|+++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ccccc
Q 011693 178 SQAKY 182 (479)
Q Consensus 178 ~~~~~ 182 (479)
+.+..
T Consensus 83 a~~~~ 87 (116)
T 2fy1_A 83 AKKPS 87 (116)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 87653
No 138
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.76 E-value=4.5e-18 Score=134.01 Aligned_cols=82 Identities=17% Similarity=0.297 Sum_probs=77.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEe
Q 011693 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (479)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~ 176 (479)
.....++|||+|||+++|+++|+++|++||.|.+|+|+.++ +++++|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567999999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ecc
Q 011693 177 TSQ 179 (479)
Q Consensus 177 ~~~ 179 (479)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 139
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.76 E-value=3.3e-18 Score=124.85 Aligned_cols=74 Identities=22% Similarity=0.294 Sum_probs=70.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 179 (479)
.+..|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.||+..+.||+|+|..+.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999965 69999999999999999999999999999999998874
No 140
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.5e-18 Score=134.38 Aligned_cols=84 Identities=17% Similarity=0.182 Sum_probs=78.3
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
....++|||+|||+++|+++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+||+.||+..|.|++|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34458999999999999999999999999999999998888888899999999999999999999999999999999999
Q ss_pred ccCC
Q 011693 352 AKPQ 355 (479)
Q Consensus 352 a~~~ 355 (479)
+..+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8754
No 141
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.76 E-value=2.9e-18 Score=135.77 Aligned_cols=84 Identities=21% Similarity=0.377 Sum_probs=79.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
....++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|++..|.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 011693 178 SQAK 181 (479)
Q Consensus 178 ~~~~ 181 (479)
+.++
T Consensus 103 a~~~ 106 (110)
T 1oo0_B 103 CFVK 106 (110)
T ss_dssp SEES
T ss_pred cccC
Confidence 8754
No 142
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.75 E-value=5e-18 Score=133.80 Aligned_cols=85 Identities=24% Similarity=0.418 Sum_probs=77.3
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEec
Q 011693 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
...++|||+|||+++|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|.+||..+ +..|+|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 34589999999999999999999999999999999999998899999999999999999999976 58999999999999
Q ss_pred cCCCcc
Q 011693 353 KPQADQ 358 (479)
Q Consensus 353 ~~~~~~ 358 (479)
.++..+
T Consensus 102 ~~~~~~ 107 (109)
T 2rs2_A 102 FPRRAQ 107 (109)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 877643
No 143
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.75 E-value=4.8e-18 Score=128.34 Aligned_cols=79 Identities=20% Similarity=0.399 Sum_probs=74.3
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEec
Q 011693 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
...++|||+|||+++|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|.+|+. +++..|+|++|.|++|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 345899999999999999999999999999999999999989999999999999999999997 5888999999999986
No 144
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.75 E-value=4.4e-18 Score=133.56 Aligned_cols=84 Identities=21% Similarity=0.378 Sum_probs=78.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCC---eEEE
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG---KKIR 174 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g---~~i~ 174 (479)
....++|||+|||+++|+++|+++|++||.|..|+|+.++ +++++|||||+|.+.++|.+||+.|++..|.+ +.|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3457999999999999999999999999999999999998 79999999999999999999999999999998 9999
Q ss_pred Eeeccccc
Q 011693 175 CSTSQAKY 182 (479)
Q Consensus 175 v~~~~~~~ 182 (479)
|.++.+..
T Consensus 91 V~~a~~~~ 98 (105)
T 2dnh_A 91 VKFADTDK 98 (105)
T ss_dssp EEESCSSC
T ss_pred EEECccCc
Confidence 99997653
No 145
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8e-18 Score=133.04 Aligned_cols=85 Identities=15% Similarity=0.291 Sum_probs=78.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCC-eEEEEec-CCCCCCCcccEEEEEeCChHHHHHHHHHhC--CceecCeEEEE
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGR-ITKVVVP-PAKPGQEKNRIGFVHFAERSSAMKALKNTE--KYELDGQALEC 349 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~-v~~v~i~-~~~~~~~~~G~afV~F~~~~~A~~A~~~l~--~~~~~g~~l~v 349 (479)
..++|||+|||+++|+++|+++|.+||. |.+|.|+ .++.++.++|||||+|.+.++|.+|+..|| +..|.|++|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 3489999999999999999999999998 9999999 788888889999999999999999999996 58999999999
Q ss_pred EeccCCCcc
Q 011693 350 SLAKPQADQ 358 (479)
Q Consensus 350 ~~a~~~~~~ 358 (479)
.++.++...
T Consensus 87 ~~a~~~~~~ 95 (109)
T 2dis_A 87 DWAEPEIDV 95 (109)
T ss_dssp EESCSSCST
T ss_pred EEcCCCCCc
Confidence 999887653
No 146
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.75 E-value=3.5e-18 Score=130.62 Aligned_cols=83 Identities=20% Similarity=0.350 Sum_probs=76.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEec
Q 011693 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
...++|||+|||+++|+++|+++|++||.|..|+|+.+ ++.++|||||+|.+.++|.+|+..||+..|.|++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34589999999999999999999999999999999974 5667899999999999999999999999999999999999
Q ss_pred cCCCc
Q 011693 353 KPQAD 357 (479)
Q Consensus 353 ~~~~~ 357 (479)
++...
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 87754
No 147
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=5.6e-18 Score=134.13 Aligned_cols=85 Identities=21% Similarity=0.379 Sum_probs=77.6
Q ss_pred ccccEEEEcCCCCCCCHHHHH---HHHhhcCCeEEEEecCCCCCC---CcccEEEEEeCChHHHHHHHHHhCCceecCeE
Q 011693 273 SQVKAVYVKNLPRNVTQDQLK---KLFEHHGRITKVVVPPAKPGQ---EKNRIGFVHFAERSSAMKALKNTEKYELDGQA 346 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~---~~F~~~G~v~~v~i~~~~~~~---~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~ 346 (479)
...++|||+|||+++++++|+ ++|++||.|.+|.|+.++.++ .++|||||+|.+.++|.+||..||+..|.|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 345899999999999999999 999999999999999988643 45699999999999999999999999999999
Q ss_pred EEEEeccCCCc
Q 011693 347 LECSLAKPQAD 357 (479)
Q Consensus 347 l~v~~a~~~~~ 357 (479)
|+|.++.++..
T Consensus 93 l~V~~a~~k~~ 103 (111)
T 2cpi_A 93 LKASLGTTKYC 103 (111)
T ss_dssp EEEESCCCCSC
T ss_pred EEEEecccccc
Confidence 99999988763
No 148
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.75 E-value=1.8e-17 Score=129.49 Aligned_cols=80 Identities=33% Similarity=0.638 Sum_probs=73.5
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEec
Q 011693 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
.+.++|||+|||+++|+++|+++|++||.|..|+|+ ++||||+|.+.++|.+||..||+..|.|++|+|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 345899999999999999999999999999999997 469999999999999999999999999999999999
Q ss_pred cCCCccCC
Q 011693 353 KPQADQKS 360 (479)
Q Consensus 353 ~~~~~~~~ 360 (479)
.++.....
T Consensus 81 ~~~~~~~~ 88 (103)
T 2dgu_A 81 KPPDQKRK 88 (103)
T ss_dssp CCCCCCCC
T ss_pred CCCcccch
Confidence 88765443
No 149
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.75 E-value=2.7e-18 Score=130.12 Aligned_cols=82 Identities=20% Similarity=0.436 Sum_probs=77.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCC-CcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeec
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE-NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~-~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 178 (479)
..++|||+|||+++|+++|+++|++||.|.+|.|+.++.++. ++|||||+|.+.++|.+|++.|++..|.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999987766 9999999999999999999999999999999999988
Q ss_pred ccc
Q 011693 179 QAK 181 (479)
Q Consensus 179 ~~~ 181 (479)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 150
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=130.43 Aligned_cols=85 Identities=25% Similarity=0.454 Sum_probs=78.2
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
....++|||+|||+++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+||. +++.|.|++|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3445899999999999999999999999999999999999989999999999999999999999 47799999999999
Q ss_pred ccCCCcc
Q 011693 352 AKPQADQ 358 (479)
Q Consensus 352 a~~~~~~ 358 (479)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqg_A 90 PNSKQSQ 96 (103)
T ss_dssp CCTTCCC
T ss_pred cCCCCcC
Confidence 9887653
No 151
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.1e-18 Score=136.38 Aligned_cols=85 Identities=26% Similarity=0.470 Sum_probs=80.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCee--------EEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccC
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVT--------EVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK 169 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~ 169 (479)
....++|||+|||+++|+++|+++|++||.|. .|+|+.++.+++++|||||+|.+.++|.+||+.|++..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34579999999999999999999999999999 6999999999999999999999999999999999999999
Q ss_pred CeEEEEeeccccc
Q 011693 170 GKKIRCSTSQAKY 182 (479)
Q Consensus 170 g~~i~v~~~~~~~ 182 (479)
|+.|+|.++.++.
T Consensus 92 g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 92 GSKLKVSLARKKP 104 (113)
T ss_dssp TEECEEECSSCCC
T ss_pred CCEEEEEECCCCC
Confidence 9999999988654
No 152
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.75 E-value=5.4e-18 Score=128.87 Aligned_cols=79 Identities=25% Similarity=0.320 Sum_probs=72.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCc--cCCeEEE
Q 011693 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE--FKGKKIR 174 (479)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~--~~g~~i~ 174 (479)
..+++++|||+|||+++|+++|+++|++||.|.+|++++ +||||||+|.+.++|.+|++.+++.. |.||.|.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 345689999999999999999999999999999999985 47899999999999999999998875 7899999
Q ss_pred Eeecccc
Q 011693 175 CSTSQAK 181 (479)
Q Consensus 175 v~~~~~~ 181 (479)
|.+++++
T Consensus 91 V~~S~~k 97 (100)
T 3r27_A 91 VNYSTSQ 97 (100)
T ss_dssp EEECSCS
T ss_pred EEecccc
Confidence 9999865
No 153
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=2e-18 Score=135.46 Aligned_cols=84 Identities=21% Similarity=0.498 Sum_probs=79.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
+...++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||+. ++..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999987 99999999999999
Q ss_pred ccccc
Q 011693 178 SQAKY 182 (479)
Q Consensus 178 ~~~~~ 182 (479)
+.++.
T Consensus 92 a~~~~ 96 (105)
T 2dh8_A 92 CTPRG 96 (105)
T ss_dssp SCCSS
T ss_pred ccCCC
Confidence 87654
No 154
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.3e-18 Score=134.01 Aligned_cols=84 Identities=17% Similarity=0.303 Sum_probs=79.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHh-cCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCc-cCCeEEEE
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQS-IGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE-FKGKKIRC 175 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~-~~g~~i~v 175 (479)
+...++|||+|||+++|+++|+++|++ ||.|.+|+|+.++ +++++|||||+|.+.++|.+||+.|++.. |.|+.|+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 456799999999999999999999999 9999999999998 89999999999999999999999999999 99999999
Q ss_pred eeccccc
Q 011693 176 STSQAKY 182 (479)
Q Consensus 176 ~~~~~~~ 182 (479)
.++.++.
T Consensus 85 ~~a~~~~ 91 (104)
T 2dhg_A 85 SVAIPKA 91 (104)
T ss_dssp CBCCCCC
T ss_pred EEccCCC
Confidence 9987653
No 155
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.5e-18 Score=136.08 Aligned_cols=83 Identities=19% Similarity=0.490 Sum_probs=78.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.+++ .|.|+.|+|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 34579999999999999999999999999999999999999999999999999999999999998888 89999999999
Q ss_pred cccc
Q 011693 178 SQAK 181 (479)
Q Consensus 178 ~~~~ 181 (479)
+...
T Consensus 93 a~~~ 96 (116)
T 2cqd_A 93 AYLG 96 (116)
T ss_dssp STTT
T ss_pred cccC
Confidence 8653
No 156
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.75 E-value=1.1e-18 Score=134.45 Aligned_cols=82 Identities=20% Similarity=0.301 Sum_probs=76.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeec
Q 011693 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 178 (479)
+..++|||+|||+++|+++|+++|++||.|..+.++.++.+++++|||||+|.+.++|.+||+.|++..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q 011693 179 QA 180 (479)
Q Consensus 179 ~~ 180 (479)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 157
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=3.7e-18 Score=133.41 Aligned_cols=83 Identities=19% Similarity=0.492 Sum_probs=78.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
+...++|||+|||+++|+++|+++|++|| |..|+|++++.+++++|||||+|.+.++|.+|| .|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34578999999999999999999999997 999999999999999999999999999999999 8999999999999999
Q ss_pred ccccc
Q 011693 178 SQAKY 182 (479)
Q Consensus 178 ~~~~~ 182 (479)
+.+..
T Consensus 90 a~~~~ 94 (103)
T 2dng_A 90 AEGRK 94 (103)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 87653
No 158
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.75 E-value=5.3e-18 Score=143.32 Aligned_cols=84 Identities=18% Similarity=0.324 Sum_probs=80.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
....++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|++..|.|+.|+|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 011693 178 SQAK 181 (479)
Q Consensus 178 ~~~~ 181 (479)
+.+.
T Consensus 116 a~~~ 119 (156)
T 1h2v_Z 116 DAGF 119 (156)
T ss_dssp ESCC
T ss_pred CCCC
Confidence 9764
No 159
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6e-19 Score=132.74 Aligned_cols=82 Identities=24% Similarity=0.487 Sum_probs=77.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
+...++|||+|||+++|+++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred cc
Q 011693 178 SQ 179 (479)
Q Consensus 178 ~~ 179 (479)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 160
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.75 E-value=2.1e-18 Score=138.47 Aligned_cols=82 Identities=26% Similarity=0.474 Sum_probs=77.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
.+..++|||+|||+++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 44579999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q 011693 178 SQ 179 (479)
Q Consensus 178 ~~ 179 (479)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 161
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3.7e-18 Score=133.48 Aligned_cols=83 Identities=24% Similarity=0.397 Sum_probs=78.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
+...++|||+|||+++|+++|+++|++||.|..|+|+.+ ++.++|||||+|.+.++|.+|++.|++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 345799999999999999999999999999999999998 799999999999999999999999999999999999999
Q ss_pred ccccc
Q 011693 178 SQAKY 182 (479)
Q Consensus 178 ~~~~~ 182 (479)
+.++.
T Consensus 90 a~~~~ 94 (103)
T 2d9p_A 90 AQRKE 94 (103)
T ss_dssp CSSCC
T ss_pred ecccc
Confidence 98654
No 162
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.75 E-value=6.2e-18 Score=133.19 Aligned_cols=80 Identities=25% Similarity=0.388 Sum_probs=76.0
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEec
Q 011693 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
.+.++|||+|||+.+|+++|+++|++||.|.+|.|+.++ ++.++|||||+|.+.++|.+||..||+..|.|++|+|.++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 445899999999999999999999999999999999998 7777999999999999999999999999999999999998
Q ss_pred c
Q 011693 353 K 353 (479)
Q Consensus 353 ~ 353 (479)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 163
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.75 E-value=1.8e-18 Score=126.75 Aligned_cols=75 Identities=23% Similarity=0.628 Sum_probs=72.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeec
Q 011693 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (479)
Q Consensus 103 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 178 (479)
+|||+|||+++|+++|+++|++||.|.+|.++.++.+++++|||||+|.+.++|.+|++ +++..|.|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999999899999999999999999999996 9999999999999864
No 164
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.75 E-value=3.6e-18 Score=143.27 Aligned_cols=82 Identities=21% Similarity=0.233 Sum_probs=78.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcC--CeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEec
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHG--RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G--~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
.++|||+|||+++|+++|+++|++|| .|.+|+|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 47999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 011693 353 KPQA 356 (479)
Q Consensus 353 ~~~~ 356 (479)
.++.
T Consensus 135 ~~~~ 138 (156)
T 3n9u_C 135 TRQN 138 (156)
T ss_dssp CHHH
T ss_pred CCCc
Confidence 7653
No 165
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1e-17 Score=129.92 Aligned_cols=82 Identities=22% Similarity=0.268 Sum_probs=73.3
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCC--ceecCeEEEE
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK--YELDGQALEC 349 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~--~~~~g~~l~v 349 (479)
..++++|||+|||+++|+++|+++|++||.|.+|.|+++ ||||||+|.+.++|.+|+..|++ ..|.|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345689999999999999999999999999999999875 69999999999999999998865 4599999999
Q ss_pred EeccCCCccC
Q 011693 350 SLAKPQADQK 359 (479)
Q Consensus 350 ~~a~~~~~~~ 359 (479)
.|++++....
T Consensus 86 ~~a~~~~~~~ 95 (104)
T 1wex_A 86 NYSTSKRITR 95 (104)
T ss_dssp EECSSSSCCC
T ss_pred EEccCccccC
Confidence 9998876543
No 166
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.75 E-value=4.1e-18 Score=134.31 Aligned_cols=85 Identities=25% Similarity=0.505 Sum_probs=75.2
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Q 011693 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (479)
Q Consensus 96 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v 175 (479)
..+...++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+||+.+ +..|.|+.|.|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 34556799999999999999999999999999999999999999999999999999999999999765 58999999999
Q ss_pred eecccc
Q 011693 176 STSQAK 181 (479)
Q Consensus 176 ~~~~~~ 181 (479)
.++.++
T Consensus 99 ~~a~~~ 104 (109)
T 2rs2_A 99 KVAFPR 104 (109)
T ss_dssp EECCCC
T ss_pred EEccCC
Confidence 998764
No 167
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4e-18 Score=133.48 Aligned_cols=82 Identities=21% Similarity=0.505 Sum_probs=77.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC-CCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS-SENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
...++|||+|||+++|+++|+++|+.|| |..|.|+.++.+ ++++|||||+|.+.++|.+|| .|++..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3568999999999999999999999999 999999999988 999999999999999999999 9999999999999999
Q ss_pred ccccc
Q 011693 178 SQAKY 182 (479)
Q Consensus 178 ~~~~~ 182 (479)
+.++.
T Consensus 91 a~~~~ 95 (104)
T 1wi8_A 91 ADQAQ 95 (104)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87653
No 168
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.75 E-value=1.9e-18 Score=126.58 Aligned_cols=75 Identities=24% Similarity=0.437 Sum_probs=72.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEec
Q 011693 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 277 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
+|||+|||+++|+++|+++|++||.|.+|.|+.++.++.++|||||+|.+.++|.+|++ ||+..|.|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999999888899999999999999999998 8999999999999875
No 169
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.7e-18 Score=135.68 Aligned_cols=85 Identities=24% Similarity=0.485 Sum_probs=80.6
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEecc
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (479)
..++|||+|||+++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45899999999999999999999999999999999999888889999999999999999999999999999999999998
Q ss_pred CCCcc
Q 011693 354 PQADQ 358 (479)
Q Consensus 354 ~~~~~ 358 (479)
+....
T Consensus 87 ~~~~~ 91 (104)
T 1p1t_A 87 SEKNK 91 (104)
T ss_dssp CTTHH
T ss_pred Cccch
Confidence 87654
No 170
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.74 E-value=5.9e-18 Score=140.14 Aligned_cols=85 Identities=22% Similarity=0.435 Sum_probs=80.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
+...++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+||+.|++..|.|+.|+|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 011693 178 SQAKY 182 (479)
Q Consensus 178 ~~~~~ 182 (479)
+.+..
T Consensus 119 a~~~~ 123 (139)
T 1u6f_A 119 AASGH 123 (139)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 98653
No 171
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.74 E-value=2.1e-18 Score=133.88 Aligned_cols=83 Identities=22% Similarity=0.402 Sum_probs=75.4
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCC-CCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEE
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAK-PGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 350 (479)
....++|||+|||+++|+++|+++|++|| |.+|+|+.++ .++.++|||||+|.+.++|.+|| .||+..|.|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34458999999999999999999999999 9999999998 68888999999999999999999 899999999999999
Q ss_pred eccCCC
Q 011693 351 LAKPQA 356 (479)
Q Consensus 351 ~a~~~~ 356 (479)
+++++.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998764
No 172
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.2e-18 Score=133.35 Aligned_cols=85 Identities=25% Similarity=0.406 Sum_probs=77.5
Q ss_pred CCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEE
Q 011693 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (479)
Q Consensus 270 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 349 (479)
......++|||+|||.++|+++|+++|++||.|.+|+|+.++.+ ++|||||+|.+.++|.+|+..||+..|.|++|+|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~--~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTB--CTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCC--CceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 33445689999999999999999999999999999999998643 6899999999999999999999999999999999
Q ss_pred EeccCCC
Q 011693 350 SLAKPQA 356 (479)
Q Consensus 350 ~~a~~~~ 356 (479)
.+++++.
T Consensus 102 ~~a~~~~ 108 (109)
T 2err_A 102 NNATARV 108 (109)
T ss_dssp EECCCSC
T ss_pred EECCCCc
Confidence 9998763
No 173
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=126.68 Aligned_cols=78 Identities=27% Similarity=0.592 Sum_probs=72.7
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEec
Q 011693 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
...++|||+|||.++|+++|+++|++||.|.+|+|+ +|||||+|.+.++|.+|+..||+..|.|++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 345899999999999999999999999999999997 489999999999999999999999999999999999
Q ss_pred cCCCcc
Q 011693 353 KPQADQ 358 (479)
Q Consensus 353 ~~~~~~ 358 (479)
.++...
T Consensus 78 ~~~~~~ 83 (90)
T 2dnq_A 78 KNKSKA 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 887643
No 174
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.74 E-value=5.1e-18 Score=137.96 Aligned_cols=84 Identities=20% Similarity=0.415 Sum_probs=79.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
..+.++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|++..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 011693 178 SQAK 181 (479)
Q Consensus 178 ~~~~ 181 (479)
+.+.
T Consensus 99 a~~~ 102 (126)
T 3ex7_B 99 CFVR 102 (126)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8754
No 175
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=4.5e-18 Score=132.45 Aligned_cols=84 Identities=27% Similarity=0.437 Sum_probs=77.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecccc
Q 011693 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (479)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~ 181 (479)
++|||+|||+++|+++|+++|++||.|.+|.|+.+ ++|||||+|.+.++|.+|++.|++..|.|+.|+|.++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999987 7899999999999999999999999999999999998653
Q ss_pred ----------------cccccCCCC
Q 011693 182 ----------------YRLFIGNIP 190 (479)
Q Consensus 182 ----------------~~l~v~~l~ 190 (479)
.++||++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 467777775
No 176
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=130.44 Aligned_cols=83 Identities=18% Similarity=0.374 Sum_probs=76.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
....++|||+|||+++|+++|+++|++||.|.+|+|+.++. .++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 34579999999999999999999999999999999999864 4799999999999999999999999999999999999
Q ss_pred ccccc
Q 011693 178 SQAKY 182 (479)
Q Consensus 178 ~~~~~ 182 (479)
+.+..
T Consensus 90 a~~~~ 94 (103)
T 2cqi_A 90 ATTPS 94 (103)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 87643
No 177
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9.9e-18 Score=128.97 Aligned_cols=81 Identities=23% Similarity=0.277 Sum_probs=75.6
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEE
Q 011693 99 PHGSEVYIGGIPHDASEHDLR----DFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~----~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~ 174 (479)
.+.++|||+|||+++|+++|+ ++|++||.|.+|+|+.++.+ +|||||+|.+.++|.+|++.||+..|.|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 457899999999999999999 99999999999999998765 89999999999999999999999999999999
Q ss_pred Eeeccccc
Q 011693 175 CSTSQAKY 182 (479)
Q Consensus 175 v~~~~~~~ 182 (479)
|.++.+..
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99987643
No 178
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.74 E-value=7.8e-18 Score=128.68 Aligned_cols=83 Identities=20% Similarity=0.360 Sum_probs=77.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
....++|||+|||+++|+++|+++|++||.|..|+|+++ +++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346799999999999999999999999999999999984 789999999999999999999999999999999999999
Q ss_pred ccccc
Q 011693 178 SQAKY 182 (479)
Q Consensus 178 ~~~~~ 182 (479)
+.+..
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 87643
No 179
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.9e-18 Score=127.34 Aligned_cols=76 Identities=26% Similarity=0.531 Sum_probs=73.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeec
Q 011693 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (479)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 178 (479)
++|||+|||+++|+++|+++|++||.|..|.++.++.+++++|||||+|.+.++|.+|++.++ ..|.|+.|+|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999999999999999999999999999999888 9999999999876
No 180
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.1e-18 Score=133.54 Aligned_cols=82 Identities=28% Similarity=0.609 Sum_probs=78.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 180 (479)
.++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.++.+
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 58999999999999999999999999999999999998999999999999999999999999999999999999999876
Q ss_pred cc
Q 011693 181 KY 182 (479)
Q Consensus 181 ~~ 182 (479)
..
T Consensus 88 ~~ 89 (104)
T 1p1t_A 88 EK 89 (104)
T ss_dssp TT
T ss_pred cc
Confidence 53
No 181
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.3e-18 Score=133.36 Aligned_cols=84 Identities=18% Similarity=0.270 Sum_probs=78.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
....++|||+|||+++|+++|+++|++||.|..+.++.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34568999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred cccc
Q 011693 178 SQAK 181 (479)
Q Consensus 178 ~~~~ 181 (479)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8643
No 182
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=127.56 Aligned_cols=80 Identities=19% Similarity=0.269 Sum_probs=75.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEecc
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (479)
..++|||+|||+++|+++|+++|++| .|.+|+|+.+ .++.++|||||+|.+.++|.+||. ||+..|.|+.|.|.+++
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 45899999999999999999999999 9999999999 667779999999999999999999 99999999999999998
Q ss_pred CCC
Q 011693 354 PQA 356 (479)
Q Consensus 354 ~~~ 356 (479)
++.
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 764
No 183
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=130.41 Aligned_cols=83 Identities=30% Similarity=0.511 Sum_probs=77.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
+...++|||+|||+++|+++|+++|++||.|..|+|+.++. .++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45679999999999999999999999999999999999864 4899999999999999999999999999999999999
Q ss_pred ccccc
Q 011693 178 SQAKY 182 (479)
Q Consensus 178 ~~~~~ 182 (479)
+.++.
T Consensus 90 a~~~~ 94 (103)
T 2cq3_A 90 ATARV 94 (103)
T ss_dssp CCSSC
T ss_pred cccCC
Confidence 88653
No 184
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.74 E-value=1.7e-18 Score=133.26 Aligned_cols=81 Identities=17% Similarity=0.179 Sum_probs=75.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEecc
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (479)
..++|||+|||+++|+++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+||..||+..|.|++|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 34899999999999999999999999999999999998888889999999999999999999999999999999999986
Q ss_pred C
Q 011693 354 P 354 (479)
Q Consensus 354 ~ 354 (479)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 4
No 185
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.2e-18 Score=133.43 Aligned_cols=82 Identities=15% Similarity=0.261 Sum_probs=74.3
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhC--CceecCeEEEE
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE--KYELDGQALEC 349 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~--~~~~~g~~l~v 349 (479)
..++++|||+|||+++|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|+..|+ +..|.|++|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 344689999999999999999999999999999999986 6999999999999999999887 46899999999
Q ss_pred EeccCCCccC
Q 011693 350 SLAKPQADQK 359 (479)
Q Consensus 350 ~~a~~~~~~~ 359 (479)
.+++++....
T Consensus 102 ~~a~~k~~~~ 111 (119)
T 2ad9_A 102 QFSNHKELKT 111 (119)
T ss_dssp EECSSSSCCC
T ss_pred EEccCCCCCc
Confidence 9998876654
No 186
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=130.31 Aligned_cols=84 Identities=19% Similarity=0.258 Sum_probs=76.3
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhhcCCeEE-EEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITK-VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
...++|||+|||+++|+++|+++|++||.|.. |+|+.+ .++.++|||||+|.+.++|.+||.. |+..|.||.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 34589999999999999999999999999998 889888 6777799999999999999999997 99999999999999
Q ss_pred ccCCCcc
Q 011693 352 AKPQADQ 358 (479)
Q Consensus 352 a~~~~~~ 358 (479)
+.+....
T Consensus 91 ~~~~~~~ 97 (104)
T 1wg5_A 91 SSRAEVR 97 (104)
T ss_dssp ECTTTSC
T ss_pred CCHHHHH
Confidence 9776543
No 187
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.9e-18 Score=133.18 Aligned_cols=82 Identities=22% Similarity=0.303 Sum_probs=74.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEe
Q 011693 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (479)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~ 176 (479)
.+...++|||+|||+++|+++|+++|++||.| +|+|+.++ +++++|||||+|.+.++|.+|| .+++..|.+|.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEE
Confidence 35567899999999999999999999999955 99999998 8999999999999999999999 589999999999998
Q ss_pred ecccc
Q 011693 177 TSQAK 181 (479)
Q Consensus 177 ~~~~~ 181 (479)
.+...
T Consensus 88 ~~~~~ 92 (102)
T 1wez_A 88 LNSTA 92 (102)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 87643
No 188
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=3.2e-18 Score=131.64 Aligned_cols=81 Identities=22% Similarity=0.218 Sum_probs=72.9
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCC--ccCCeEEEE
Q 011693 99 PHGSEVYIGGIPH-DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNT--EFKGKKIRC 175 (479)
Q Consensus 99 ~~~~~l~V~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~--~~~g~~i~v 175 (479)
.++++|||+|||+ ++|+++|+++|++||.|.+|+|+++ ++||||+|.+.++|.+|++.|++. .|.|++|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3578999999999 9999999999999999999999875 589999999999999999988854 599999999
Q ss_pred eecccccccc
Q 011693 176 STSQAKYRLF 185 (479)
Q Consensus 176 ~~~~~~~~l~ 185 (479)
.++.....+.
T Consensus 87 ~~a~~~~~~~ 96 (102)
T 1x4d_A 87 HLSQKYKRIK 96 (102)
T ss_dssp EEECCCTTSS
T ss_pred EECCCCCCCC
Confidence 9998766543
No 189
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=130.97 Aligned_cols=80 Identities=19% Similarity=0.272 Sum_probs=74.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEecc
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (479)
...+|||+|||+++|+++|+++|++| .|.+|+|+.++. +.++|||||+|.+.++|.+|| .+|+..|.||.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 35799999999999999999999999 899999999987 666999999999999999999 589999999999999987
Q ss_pred CCC
Q 011693 354 PQA 356 (479)
Q Consensus 354 ~~~ 356 (479)
+..
T Consensus 92 ~~~ 94 (109)
T 2dnn_A 92 ERQ 94 (109)
T ss_dssp HHH
T ss_pred ccc
Confidence 654
No 190
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.2e-17 Score=128.51 Aligned_cols=82 Identities=27% Similarity=0.466 Sum_probs=73.6
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
....++|||+|||+++|+++|+++|++||.| +|+.+ .++.++|||||+|.+.++|.+||..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3446899999999999999999999999977 66666 5566799999999999999999999999999999999999
Q ss_pred ccCCCc
Q 011693 352 AKPQAD 357 (479)
Q Consensus 352 a~~~~~ 357 (479)
+.++..
T Consensus 88 a~~~~~ 93 (101)
T 2fc9_A 88 QGPRGS 93 (101)
T ss_dssp CSSCCC
T ss_pred cCCCCC
Confidence 988754
No 191
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.8e-18 Score=132.51 Aligned_cols=81 Identities=17% Similarity=0.254 Sum_probs=73.7
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEec
Q 011693 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
...++|||+|||+++|+++|+++|++||.| +|+|+.++ ++.++|||||+|.+.++|.+||. +|+..|.+|.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 344899999999999999999999999954 99999998 67789999999999999999995 7999999999999998
Q ss_pred cCCC
Q 011693 353 KPQA 356 (479)
Q Consensus 353 ~~~~ 356 (479)
.+..
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 192
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=127.62 Aligned_cols=81 Identities=21% Similarity=0.414 Sum_probs=76.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
+...++|||+|||+++|+++|+++|+.| .|.+|+|+++ .+++++|||||+|.+.++|.+||+ +++..|.|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4467899999999999999999999999 9999999999 789999999999999999999998 999999999999999
Q ss_pred cccc
Q 011693 178 SQAK 181 (479)
Q Consensus 178 ~~~~ 181 (479)
+.++
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 8764
No 193
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-18 Score=130.86 Aligned_cols=80 Identities=24% Similarity=0.294 Sum_probs=75.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEecc
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (479)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 34899999999999999999999999999999999999989999999999999999999999999999999999887654
No 194
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.9e-18 Score=136.52 Aligned_cols=84 Identities=15% Similarity=0.157 Sum_probs=77.5
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhhcCCe-EEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v-~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
...++|||+|||+++|+++|+++|+.||.| ..|+|+.++ ++.++|||||+|.+.++|.+||.. |+..|.|++|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 345899999999999999999999999999 899999999 777799999999999999999996 99999999999999
Q ss_pred ccCCCcc
Q 011693 352 AKPQADQ 358 (479)
Q Consensus 352 a~~~~~~ 358 (479)
+.+....
T Consensus 91 a~~~~~~ 97 (114)
T 2cpy_A 91 VTLEDMR 97 (114)
T ss_dssp ECHHHHH
T ss_pred CCHHHHH
Confidence 9877643
No 195
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.74 E-value=1.6e-17 Score=134.51 Aligned_cols=85 Identities=15% Similarity=0.291 Sum_probs=79.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
+...++|||+|||+++|+++|+++|++||.|.+|+|+.++ +++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4457899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cccccc
Q 011693 178 SQAKYR 183 (479)
Q Consensus 178 ~~~~~~ 183 (479)
+.....
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 876543
No 196
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=130.61 Aligned_cols=81 Identities=25% Similarity=0.416 Sum_probs=74.2
Q ss_pred cccEEEEcCCCCCC------CHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCe-E
Q 011693 274 QVKAVYVKNLPRNV------TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQ-A 346 (479)
Q Consensus 274 ~~~~l~V~nLp~~~------t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~-~ 346 (479)
..++|||+|||+.+ |+++|+++|++||.|.+|.|+ +.++.++|||||+|.+.++|.+||..||+..|.|+ +
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 35899999999999 789999999999999999998 45667799999999999999999999999999998 9
Q ss_pred EEEEeccCCC
Q 011693 347 LECSLAKPQA 356 (479)
Q Consensus 347 l~v~~a~~~~ 356 (479)
|+|.++....
T Consensus 92 l~V~~a~~~~ 101 (105)
T 2nlw_A 92 FRVNLFTDFD 101 (105)
T ss_dssp EEEECSCCCC
T ss_pred EEEEEcchHh
Confidence 9999997553
No 197
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.73 E-value=1.1e-17 Score=131.06 Aligned_cols=77 Identities=19% Similarity=0.274 Sum_probs=70.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcC-CeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEecc
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G-~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (479)
..+|||+|||+++|+++|+++|++|| .|..+.|+.+ .++|||||+|.+.++|.+||..||+..|.|++|+|.++.
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 37999999999999999999999999 8999999753 258999999999999999999999999999999999986
Q ss_pred CC
Q 011693 354 PQ 355 (479)
Q Consensus 354 ~~ 355 (479)
.+
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 198
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=132.62 Aligned_cols=82 Identities=20% Similarity=0.314 Sum_probs=77.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
....++|||+|||+++|+++|+++|++||.|.+|+|+.++ +++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3457899999999999999999999999999999999997 599999999999999999999999999999999999999
Q ss_pred ccc
Q 011693 178 SQA 180 (479)
Q Consensus 178 ~~~ 180 (479)
+..
T Consensus 91 a~~ 93 (114)
T 2do0_A 91 DER 93 (114)
T ss_dssp CSC
T ss_pred ccc
Confidence 864
No 199
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=129.67 Aligned_cols=83 Identities=27% Similarity=0.518 Sum_probs=77.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
....++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||+ ++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3457899999999999999999999999999999999999999999999999999999999997 57789999999999
Q ss_pred ccccc
Q 011693 178 SQAKY 182 (479)
Q Consensus 178 ~~~~~ 182 (479)
+.++.
T Consensus 90 a~~~~ 94 (103)
T 2cqg_A 90 PNSKQ 94 (103)
T ss_dssp CCTTC
T ss_pred cCCCC
Confidence 88654
No 200
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.5e-18 Score=132.04 Aligned_cols=83 Identities=22% Similarity=0.317 Sum_probs=75.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEe
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTE-VRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~-v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~ 176 (479)
....++|||+|||+++|+++|+++|++||.|.. |.|+.+ .+++++|||||+|.+.++|.+||+. ++..|.||.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 345789999999999999999999999999998 888888 7899999999999999999999976 9999999999998
Q ss_pred eccccc
Q 011693 177 TSQAKY 182 (479)
Q Consensus 177 ~~~~~~ 182 (479)
.+....
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 886543
No 201
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.73 E-value=2.9e-18 Score=139.67 Aligned_cols=82 Identities=18% Similarity=0.271 Sum_probs=76.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCC---eeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEE
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGE---VTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~---v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~ 174 (479)
+...++|||+|||+++|+++|+++|++||. |.+|+|++++. |+++|||||+|.+.++|.+||+ +++..|.||.|+
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 445789999999999999999999999999 89999999987 9999999999999999999997 999999999999
Q ss_pred Eeecccc
Q 011693 175 CSTSQAK 181 (479)
Q Consensus 175 v~~~~~~ 181 (479)
|..+...
T Consensus 119 V~~a~~~ 125 (136)
T 2hgl_A 119 VFKSHRT 125 (136)
T ss_dssp EEECCHH
T ss_pred EEECChH
Confidence 9988643
No 202
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.3e-18 Score=126.07 Aligned_cols=76 Identities=22% Similarity=0.428 Sum_probs=73.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEec
Q 011693 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
++|||+|||+++|+++|+++|++||.|.+|.|+.++.++.++|||||+|.+.++|.+|+..++ ..|.|++|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 379999999999999999999999999999999999988899999999999999999999999 9999999999987
No 203
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.1e-18 Score=136.29 Aligned_cols=82 Identities=18% Similarity=0.258 Sum_probs=76.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCe-eEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEe
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEV-TEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v-~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~ 176 (479)
+...++|||+|||+++|+++|+++|+.||.| ..|+|+.++ +++++|||||+|.+.++|.+||+. ++..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 4457899999999999999999999999999 899999998 899999999999999999999965 9999999999999
Q ss_pred ecccc
Q 011693 177 TSQAK 181 (479)
Q Consensus 177 ~~~~~ 181 (479)
++.++
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98754
No 204
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.9e-18 Score=135.40 Aligned_cols=80 Identities=30% Similarity=0.498 Sum_probs=77.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 180 (479)
.++|||+|||+++|+++|+++|+.||.|..|+|+.++.+++++|||||+|.+.++|.+|| .|++..|.|+.|+|.++.+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 489999999999999999999999999999999999999999999999999999999999 9999999999999999875
Q ss_pred c
Q 011693 181 K 181 (479)
Q Consensus 181 ~ 181 (479)
.
T Consensus 104 ~ 104 (114)
T 2cq4_A 104 E 104 (114)
T ss_dssp H
T ss_pred C
Confidence 4
No 205
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=4.2e-17 Score=124.49 Aligned_cols=79 Identities=19% Similarity=0.374 Sum_probs=72.7
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
....++|||+|||+++|+++|+++|++||.|.+|.|++ +||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 34458999999999999999999999999999999974 5999999999999999999999999999999999
Q ss_pred ccCCCcc
Q 011693 352 AKPQADQ 358 (479)
Q Consensus 352 a~~~~~~ 358 (479)
++++...
T Consensus 79 a~~~~~~ 85 (92)
T 2dgt_A 79 STSRLRT 85 (92)
T ss_dssp SSCCCSC
T ss_pred ccCCCCC
Confidence 9877643
No 206
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.73 E-value=3.8e-18 Score=139.46 Aligned_cols=83 Identities=18% Similarity=0.358 Sum_probs=78.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeE--EEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCC----ccCCeEE
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTE--VRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNT----EFKGKKI 173 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~--v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~----~~~g~~i 173 (479)
..++|||+|||+++|+++|+++|++||.|.. |+|++++.+++++|||||+|.+. +|.+|++.|++. .|.|+.|
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l 100 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTI 100 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEE
Confidence 4689999999999999999999999999977 99999999999999999999999 999999999999 9999999
Q ss_pred EEeecccccc
Q 011693 174 RCSTSQAKYR 183 (479)
Q Consensus 174 ~v~~~~~~~~ 183 (479)
+|.++.+...
T Consensus 101 ~V~~a~~~~~ 110 (131)
T 2m2b_A 101 NVEFAKGSKR 110 (131)
T ss_dssp CCEECCCSCC
T ss_pred EEEECCCCCC
Confidence 9999987543
No 207
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.73 E-value=1.1e-17 Score=135.53 Aligned_cols=82 Identities=21% Similarity=0.351 Sum_probs=77.6
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEecc
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (479)
..++|||+|||+++|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|.+|| .||+..|.|+.|+|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3589999999999999999999999999999999999988888999999999999999999 799999999999999997
Q ss_pred CCC
Q 011693 354 PQA 356 (479)
Q Consensus 354 ~~~ 356 (479)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 208
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.73 E-value=3.3e-18 Score=132.75 Aligned_cols=82 Identities=20% Similarity=0.512 Sum_probs=75.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEe
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGK-DSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~ 176 (479)
....++|||+|||+++|+++|+++|+.|| |.+|+|+.++ .+++++|||||+|.+.++|.+|| .|++..|.|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 44579999999999999999999999999 9999999998 68999999999999999999999 899999999999999
Q ss_pred ecccc
Q 011693 177 TSQAK 181 (479)
Q Consensus 177 ~~~~~ 181 (479)
++.++
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 98764
No 209
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.2e-17 Score=129.46 Aligned_cols=80 Identities=23% Similarity=0.446 Sum_probs=74.6
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEecc
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (479)
..++|||+|||.++|+++|+++|++||.|.+|+|+.+ +|||||+|.+.++|.+|+..||+..|.|++|+|.|++
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 3489999999999999999999999999999999987 5999999999999999999999999999999999998
Q ss_pred CCCccC
Q 011693 354 PQADQK 359 (479)
Q Consensus 354 ~~~~~~ 359 (479)
++....
T Consensus 98 ~~~~~~ 103 (109)
T 1x4g_A 98 ESPDMT 103 (109)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 876543
No 210
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=132.19 Aligned_cols=86 Identities=24% Similarity=0.426 Sum_probs=79.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEe-eCCCCCCCcceEEEEeCCHHHHHHHHHHhC--CCccCCeEE
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGE-VTEVRIM-KGKDSSENKGFAFVTFRNVELASKAIDKLN--NTEFKGKKI 173 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~-v~~v~i~-~~~~~g~~~g~afV~F~~~~~A~~a~~~~~--~~~~~g~~i 173 (479)
..+.++|||+|||+++|+++|+++|+.||. |.+|.|+ .++.+++++|||||+|.+.++|.+|++.|+ +..|.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 446789999999999999999999999998 9999998 888889999999999999999999999896 589999999
Q ss_pred EEeecccccc
Q 011693 174 RCSTSQAKYR 183 (479)
Q Consensus 174 ~v~~~~~~~~ 183 (479)
+|.++.+...
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999987543
No 211
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.9e-17 Score=130.73 Aligned_cols=82 Identities=20% Similarity=0.428 Sum_probs=75.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
+...++|||+|||+++|+++|+++|++||.|..|.|+.+ ++++|||||+|.+.++|.+||+.|++..|.|+.|+|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 445789999999999999999999999999999999664 56899999999999999999999999999999999999
Q ss_pred ccccc
Q 011693 178 SQAKY 182 (479)
Q Consensus 178 ~~~~~ 182 (479)
+.+..
T Consensus 96 a~~~~ 100 (109)
T 1x4a_A 96 PRSGR 100 (109)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 87653
No 212
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=129.04 Aligned_cols=84 Identities=25% Similarity=0.441 Sum_probs=76.3
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEE
Q 011693 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (479)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 350 (479)
...+.++|||+|||+++|+++|+++|+.| ..|+++.++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34456899999999999999999999987 377888888888889999999999999999999999999999999999
Q ss_pred eccCCCc
Q 011693 351 LAKPQAD 357 (479)
Q Consensus 351 ~a~~~~~ 357 (479)
+++++..
T Consensus 88 ~a~~~~~ 94 (102)
T 2fc8_A 88 WAKPKGE 94 (102)
T ss_dssp ECCCCCS
T ss_pred EecCCCC
Confidence 9988764
No 213
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.8e-17 Score=126.80 Aligned_cols=78 Identities=17% Similarity=0.319 Sum_probs=73.0
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceec--CeEEEEE
Q 011693 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD--GQALECS 350 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~--g~~l~v~ 350 (479)
.++++|||+|||+++|+++|+++|++||.|.+|.|+.+ +|||||+|.+.++|.+|+..||+..|. |++|+|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 34589999999999999999999999999999999875 589999999999999999999999999 9999999
Q ss_pred eccCCC
Q 011693 351 LAKPQA 356 (479)
Q Consensus 351 ~a~~~~ 356 (479)
+++++.
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 998764
No 214
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.73 E-value=2.2e-18 Score=131.20 Aligned_cols=81 Identities=25% Similarity=0.476 Sum_probs=74.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccCC
Q 011693 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 355 (479)
++|||+|||.++++++|+++|++||.|.+|+|+.++.++.++|||||+|.+.+ |.+|+..||+..|.|++|+|++|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999998888999999999999 99999999999999999999999876
Q ss_pred Cc
Q 011693 356 AD 357 (479)
Q Consensus 356 ~~ 357 (479)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 215
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.73 E-value=3.3e-17 Score=135.94 Aligned_cols=83 Identities=27% Similarity=0.421 Sum_probs=77.4
Q ss_pred CCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEE
Q 011693 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (479)
Q Consensus 270 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 349 (479)
......++|||+|||.++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+||+.||+..|.|++|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 33445689999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred Eec
Q 011693 350 SLA 352 (479)
Q Consensus 350 ~~a 352 (479)
.+|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 986
No 216
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.73 E-value=4.8e-18 Score=135.91 Aligned_cols=82 Identities=20% Similarity=0.287 Sum_probs=76.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCC---eeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEE
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGE---VTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~---v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~ 174 (479)
+...++|||+|||+++|+++|+++|+.||. |..|+|+.++. ++++|||||+|.+.++|.+||+ +++..|.||.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 345789999999999999999999999999 89999999987 9999999999999999999997 999999999999
Q ss_pred Eeecccc
Q 011693 175 CSTSQAK 181 (479)
Q Consensus 175 v~~~~~~ 181 (479)
|.++..+
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9987643
No 217
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=7.6e-18 Score=131.78 Aligned_cols=79 Identities=25% Similarity=0.388 Sum_probs=73.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 180 (479)
.++|||+|||+++|+++|+++|+.| .|.+|+|+.++. |+++|||||+|.+.++|.+|| .+++..|.||.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4789999999999999999999999 899999999976 999999999999999999999 7999999999999988865
Q ss_pred cc
Q 011693 181 KY 182 (479)
Q Consensus 181 ~~ 182 (479)
..
T Consensus 93 ~~ 94 (109)
T 2dnn_A 93 RQ 94 (109)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 218
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.72 E-value=2.3e-18 Score=131.05 Aligned_cols=80 Identities=29% Similarity=0.621 Sum_probs=74.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecccc
Q 011693 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (479)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~ 181 (479)
++|||+|||+++|+++|+++|++||.|.+|.|+.++.+++++|||||+|.+.+ |.+|+..|++..|.|+.|+|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 99999999999999999999998765
Q ss_pred c
Q 011693 182 Y 182 (479)
Q Consensus 182 ~ 182 (479)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 219
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=9.2e-17 Score=124.42 Aligned_cols=78 Identities=35% Similarity=0.559 Sum_probs=72.1
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhc--CCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEE
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 349 (479)
....++|||+|||+++|+++|+++|++| |.|.+|.++ +|||||+|.+.++|.+||..||+..|.|++|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3456899999999999999999999999 999999885 589999999999999999999999999999999
Q ss_pred EeccCCCc
Q 011693 350 SLAKPQAD 357 (479)
Q Consensus 350 ~~a~~~~~ 357 (479)
.+++++..
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpd_A 84 TLAKPVDK 91 (99)
T ss_dssp ECCCCCCC
T ss_pred EECCCCCC
Confidence 99987654
No 220
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=9.3e-18 Score=132.86 Aligned_cols=86 Identities=21% Similarity=0.362 Sum_probs=78.7
Q ss_pred CCCceEEEcCCCCCCCHHHHH---HHHHhcCCeeEEEEeeCCCCC---CCcceEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 011693 99 PHGSEVYIGGIPHDASEHDLR---DFCQSIGEVTEVRIMKGKDSS---ENKGFAFVTFRNVELASKAIDKLNNTEFKGKK 172 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~---~~f~~~G~v~~v~i~~~~~~g---~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~ 172 (479)
...++|||+|||+++|+++|+ ++|++||.|..|.|++++.++ +++|||||+|.+.++|.+||+.||+..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 356899999999999999999 999999999999999987654 56699999999999999999999999999999
Q ss_pred EEEeeccccccc
Q 011693 173 IRCSTSQAKYRL 184 (479)
Q Consensus 173 i~v~~~~~~~~l 184 (479)
|+|.++.++.+.
T Consensus 93 l~V~~a~~k~~~ 104 (111)
T 2cpi_A 93 LKASLGTTKYCS 104 (111)
T ss_dssp EEEESCCCCSCS
T ss_pred EEEEeccccccc
Confidence 999999887643
No 221
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.72 E-value=5.1e-17 Score=128.50 Aligned_cols=95 Identities=20% Similarity=0.306 Sum_probs=77.9
Q ss_pred CCCCeeeeCCCCCCCCCCCccccEEEEcCCCCC-CCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHH
Q 011693 254 TNAPTVSWADPRNVDSSGASQVKAVYVKNLPRN-VTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMK 332 (479)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~ 332 (479)
+..+.+..+.+.... ......++|||+|||++ +|+++|+++|++||.|..|.| ++|||||+|.+.++|.+
T Consensus 7 g~~~~~~~s~~~~~~-~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~ 77 (110)
T 1wf1_A 7 GMSLKLQASNVTNKN-DPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARA 77 (110)
T ss_dssp SCCCCCCCCCSCCSC-CCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHH
T ss_pred CcccccccCCCCCCC-CCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHH
Confidence 334444444433222 22334589999999999 999999999999999999999 37999999999999999
Q ss_pred HHHHhCCceecCeEEEEEeccCCCc
Q 011693 333 ALKNTEKYELDGQALECSLAKPQAD 357 (479)
Q Consensus 333 A~~~l~~~~~~g~~l~v~~a~~~~~ 357 (479)
||..||+..|.|++|+|.++.++..
T Consensus 78 A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 78 AVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp HHHHHTTCEETTEECCEEESCCCCS
T ss_pred HHHHcCCCEECCeEEEEEECCCCCC
Confidence 9999999999999999999986544
No 222
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=2.4e-17 Score=132.62 Aligned_cols=83 Identities=20% Similarity=0.388 Sum_probs=73.9
Q ss_pred ccccEEEEcCCCCCCCHHHHH----HHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEE
Q 011693 273 SQVKAVYVKNLPRNVTQDQLK----KLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~ 348 (479)
.++++|||+|||+.+++++|+ ++|++||.|.+|.+.. ++.++|||||+|.+.++|..|+..||+..|.|++|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 445899999999999999876 7999999999998864 345699999999999999999999999999999999
Q ss_pred EEeccCCCcc
Q 011693 349 CSLAKPQADQ 358 (479)
Q Consensus 349 v~~a~~~~~~ 358 (479)
|.|++++...
T Consensus 104 V~~a~~~~~~ 113 (127)
T 2a3j_A 104 ITFSETPQSQ 113 (127)
T ss_dssp EEECCCCCHH
T ss_pred EEEccCcchh
Confidence 9999876543
No 223
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-17 Score=133.60 Aligned_cols=81 Identities=23% Similarity=0.515 Sum_probs=77.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 180 (479)
.++|||+|||+++|+++|+++|+.||.|..|+|+.++.+++++|||||+|.+.++|.+||+. ++..|.|+.|.|.++.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 48999999999999999999999999999999999999999999999999999999999976 99999999999999886
Q ss_pred cc
Q 011693 181 KY 182 (479)
Q Consensus 181 ~~ 182 (479)
+.
T Consensus 106 ~~ 107 (116)
T 1x4b_A 106 RE 107 (116)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 224
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.3e-17 Score=131.68 Aligned_cols=80 Identities=23% Similarity=0.331 Sum_probs=72.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhC--CCccCCeEEE
Q 011693 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN--NTEFKGKKIR 174 (479)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~--~~~~~g~~i~ 174 (479)
..+++++|||+|||+++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.++ +..|.|+.|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3456789999999999999999999999999999999875 7999999999999999999887 4689999999
Q ss_pred Eeeccccc
Q 011693 175 CSTSQAKY 182 (479)
Q Consensus 175 v~~~~~~~ 182 (479)
|.++.++.
T Consensus 101 V~~a~~k~ 108 (119)
T 2ad9_A 101 IQFSNHKE 108 (119)
T ss_dssp EEECSSSS
T ss_pred EEEccCCC
Confidence 99997653
No 225
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=2.6e-17 Score=128.10 Aligned_cols=78 Identities=21% Similarity=0.330 Sum_probs=73.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccCC
Q 011693 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 355 (479)
++|||+|||+++|+++|+++|++||.|.+|.|+.+ ++|||||+|.+.++|.+|+..||+..|.|++|+|.+++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999988 4799999999999999999999999999999999999887
Q ss_pred Ccc
Q 011693 356 ADQ 358 (479)
Q Consensus 356 ~~~ 358 (479)
...
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 643
No 226
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=128.67 Aligned_cols=85 Identities=29% Similarity=0.498 Sum_probs=78.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
.++.++|||+|||+++|+++|+++|++||.|..|+|+++ +|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 456789999999999999999999999999999999854 79999999999999999999999999999999999
Q ss_pred cccccccccCC
Q 011693 178 SQAKYRLFIGN 188 (479)
Q Consensus 178 ~~~~~~l~v~~ 188 (479)
+.++..+.+++
T Consensus 86 a~~~~~~~~g~ 96 (99)
T 2cpj_A 86 ACHSASLTSGP 96 (99)
T ss_dssp SSCCSCCCCCC
T ss_pred cCCCCCCCCCC
Confidence 99988877764
No 227
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.72 E-value=7.3e-18 Score=123.46 Aligned_cols=75 Identities=21% Similarity=0.520 Sum_probs=71.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeec
Q 011693 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (479)
Q Consensus 103 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 178 (479)
+|||+|||+++|+++|+++|++||.|.+|.++.++.+++++|||||+|.+.++|.+|++ +++..|.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999999999999999999999999999996 5899999999999764
No 228
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.72 E-value=5.5e-18 Score=138.88 Aligned_cols=83 Identities=23% Similarity=0.422 Sum_probs=79.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeec
Q 011693 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 178 (479)
...++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||+.|++..|.|+.|+|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 011693 179 QAK 181 (479)
Q Consensus 179 ~~~ 181 (479)
.+.
T Consensus 125 ~~~ 127 (135)
T 2lea_A 125 RYG 127 (135)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 229
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=1.8e-17 Score=129.94 Aligned_cols=82 Identities=24% Similarity=0.412 Sum_probs=73.2
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEE
Q 011693 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (479)
Q Consensus 96 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~ 174 (479)
..++..++|||+|||+++|+++|+++|++|| .|..|.|..+ +++|||||+|.+.++|.+||+.||+..|.|+.|+
T Consensus 23 ~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~ 98 (111)
T 2jvr_A 23 KLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVIT 98 (111)
T ss_dssp --CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3466788999999999999999999999999 8999998643 4899999999999999999999999999999999
Q ss_pred Eeecccc
Q 011693 175 CSTSQAK 181 (479)
Q Consensus 175 v~~~~~~ 181 (479)
|.++...
T Consensus 99 V~~a~~~ 105 (111)
T 2jvr_A 99 VERDDNP 105 (111)
T ss_dssp EEESCC-
T ss_pred EEECCCC
Confidence 9988643
No 230
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.3e-17 Score=130.57 Aligned_cols=82 Identities=13% Similarity=0.357 Sum_probs=76.5
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCcee--------cC
Q 011693 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL--------DG 344 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~--------~g 344 (479)
...++|||+|||+++|+++|+++|++||.|.+|+|+.++ ++.++|||||+|.+.++|.+||..||+..| .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 345899999999999999999999999999999999998 777799999999999999999999999999 67
Q ss_pred eEEEEEeccCC
Q 011693 345 QALECSLAKPQ 355 (479)
Q Consensus 345 ~~l~v~~a~~~ 355 (479)
++|.|+|+.|+
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999999865
No 231
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.4e-17 Score=129.88 Aligned_cols=82 Identities=17% Similarity=0.293 Sum_probs=72.8
Q ss_pred CccccEEEEcCCCCC-CCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhC--CceecCeEEE
Q 011693 272 ASQVKAVYVKNLPRN-VTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE--KYELDGQALE 348 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~--~~~~~g~~l~ 348 (479)
..++++|||+|||++ +|+++|+++|++||.|.+|+|++. ||||||+|.+.++|.+|+..|+ +..|.|++|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345689999999998 999999999999999999999864 6999999999999999999886 4569999999
Q ss_pred EEeccCCCccC
Q 011693 349 CSLAKPQADQK 359 (479)
Q Consensus 349 v~~a~~~~~~~ 359 (479)
|.+++.+....
T Consensus 96 V~~a~~~~~~~ 106 (112)
T 1x4f_A 96 VDLSEKYKKLV 106 (112)
T ss_dssp EEEECSCSSSS
T ss_pred EEECccccccc
Confidence 99998766443
No 232
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.7e-17 Score=130.73 Aligned_cols=83 Identities=30% Similarity=0.510 Sum_probs=76.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEe
Q 011693 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (479)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~ 176 (479)
.....++|||+|||+++|+++|+++|++||.|.+|+|+.++ +.++|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34467999999999999999999999999999999999985 4589999999999999999999999999999999999
Q ss_pred ecccc
Q 011693 177 TSQAK 181 (479)
Q Consensus 177 ~~~~~ 181 (479)
++.++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 98764
No 233
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=7.1e-17 Score=122.66 Aligned_cols=77 Identities=23% Similarity=0.426 Sum_probs=71.7
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEec
Q 011693 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
...++|||+|||+++|+++|+++|++||.|.+|+|++ +||||+|.+.++|.+|+..||+..|.|++|+|.++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 3458999999999999999999999999999999984 59999999999999999999999999999999999
Q ss_pred cCCCc
Q 011693 353 KPQAD 357 (479)
Q Consensus 353 ~~~~~ 357 (479)
.+...
T Consensus 79 ~~~~~ 83 (90)
T 2dnp_A 79 TKGQK 83 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87754
No 234
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.6e-18 Score=134.96 Aligned_cols=84 Identities=24% Similarity=0.355 Sum_probs=74.3
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCe----EEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEE
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRI----TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQAL 347 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v----~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l 347 (479)
..++++|||+|||+++|+++|+++|++||.| ..+.+. ++.++|||||+|.+.++|.+||..||+..|.|++|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 3456899999999999999999999999998 455554 56678999999999999999999999999999999
Q ss_pred EEEeccCCCccC
Q 011693 348 ECSLAKPQADQK 359 (479)
Q Consensus 348 ~v~~a~~~~~~~ 359 (479)
+|.++.++..+.
T Consensus 98 ~v~~a~~~~~~~ 109 (115)
T 2cpx_A 98 VIEFGKNKKQRS 109 (115)
T ss_dssp EEEECCCCSCCC
T ss_pred EEEEccCCCCCC
Confidence 999998876543
No 235
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.72 E-value=3.9e-18 Score=132.78 Aligned_cols=83 Identities=16% Similarity=0.185 Sum_probs=76.4
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEecc
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (479)
..++|||+|||+++|+++|+++|++||.|.. .++.+..++.++|||||+|.+.++|.+||+ ||+..|.|+.|+|.++.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 4589999999999999999999999999888 777887777889999999999999999999 99999999999999998
Q ss_pred CCCcc
Q 011693 354 PQADQ 358 (479)
Q Consensus 354 ~~~~~ 358 (479)
++..+
T Consensus 94 ~~~~~ 98 (101)
T 1fj7_A 94 GRDGT 98 (101)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 77643
No 236
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.71 E-value=6.7e-18 Score=125.56 Aligned_cols=73 Identities=14% Similarity=0.332 Sum_probs=68.2
Q ss_pred CceEEEcCCCCCC------CHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCe-EE
Q 011693 101 GSEVYIGGIPHDA------SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGK-KI 173 (479)
Q Consensus 101 ~~~l~V~nLp~~~------t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~-~i 173 (479)
+++|||+|||+++ |+++|+++|++||.|.+|.|+ +.+|+++|||||+|.+.++|.+|++.||+..|.|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4789999999999 789999999999999999987 46799999999999999999999999999999999 88
Q ss_pred EE
Q 011693 174 RC 175 (479)
Q Consensus 174 ~v 175 (479)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 237
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.71 E-value=2.9e-17 Score=129.03 Aligned_cols=80 Identities=28% Similarity=0.461 Sum_probs=72.7
Q ss_pred CCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEE
Q 011693 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (479)
Q Consensus 270 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 349 (479)
......++|||+|||+++|+++|+++|++||.|..|.|+ +|||||+|.+.++|.+|+..||+..|.|+.|.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 344556899999999999999999999999999999998 589999999999999999999999999999999
Q ss_pred EeccCCCc
Q 011693 350 SLAKPQAD 357 (479)
Q Consensus 350 ~~a~~~~~ 357 (479)
.+++++..
T Consensus 98 ~~a~~~~~ 105 (108)
T 2jvo_A 98 VYSKLPAK 105 (108)
T ss_dssp ESCSCCC-
T ss_pred EEecCCCC
Confidence 99987654
No 238
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.71 E-value=2.4e-17 Score=136.74 Aligned_cols=81 Identities=28% Similarity=0.558 Sum_probs=76.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 44579999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred c
Q 011693 178 S 178 (479)
Q Consensus 178 ~ 178 (479)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 4
No 239
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.71 E-value=7.2e-18 Score=137.35 Aligned_cols=81 Identities=12% Similarity=0.181 Sum_probs=75.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCC---eEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEE
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGR---ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~---v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 350 (479)
..++|||+|||+++|+++|+++|++||. |.+|+|+.++. +.++|||||+|.+.++|.+||. ||+..|+||.|+|.
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 3589999999999999999999999999 89999999988 7779999999999999999999 99999999999999
Q ss_pred eccCCC
Q 011693 351 LAKPQA 356 (479)
Q Consensus 351 ~a~~~~ 356 (479)
++.+..
T Consensus 121 ~a~~~e 126 (136)
T 2hgl_A 121 KSHRTE 126 (136)
T ss_dssp ECCHHH
T ss_pred ECChHH
Confidence 997654
No 240
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=5e-17 Score=125.94 Aligned_cols=80 Identities=28% Similarity=0.479 Sum_probs=74.1
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
..+.++|||+|||+++|+++|+++|++||.|..|+|+++ +|||||+|.+.++|.+|+..||+..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 344589999999999999999999999999999999875 59999999999999999999999999999999999
Q ss_pred ccCCCc
Q 011693 352 AKPQAD 357 (479)
Q Consensus 352 a~~~~~ 357 (479)
+.++..
T Consensus 86 a~~~~~ 91 (99)
T 2cpj_A 86 ACHSAS 91 (99)
T ss_dssp SSCCSC
T ss_pred cCCCCC
Confidence 987653
No 241
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.1e-17 Score=126.36 Aligned_cols=77 Identities=21% Similarity=0.326 Sum_probs=70.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHh--CCCccCCeEEEEe
Q 011693 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL--NNTEFKGKKIRCS 176 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~--~~~~~~g~~i~v~ 176 (479)
++.++|||+|||+++|+++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+|++.+ ++..|.|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 45789999999999999999999999999999998864 899999999999999999876 5678999999999
Q ss_pred ecccc
Q 011693 177 TSQAK 181 (479)
Q Consensus 177 ~~~~~ 181 (479)
++..+
T Consensus 87 ~a~~~ 91 (101)
T 2cq1_A 87 YSNHK 91 (101)
T ss_dssp ECSCS
T ss_pred EcCcc
Confidence 99764
No 242
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.71 E-value=2.1e-17 Score=133.87 Aligned_cols=80 Identities=24% Similarity=0.502 Sum_probs=76.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 180 (479)
.++|||+|||+++|+++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|.+|| .|++..|.|+.|+|.++.+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 589999999999999999999999999999999999999999999999999999999999 8999999999999999875
Q ss_pred c
Q 011693 181 K 181 (479)
Q Consensus 181 ~ 181 (479)
.
T Consensus 115 ~ 115 (124)
T 2jwn_A 115 N 115 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 243
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.71 E-value=1.7e-17 Score=129.85 Aligned_cols=80 Identities=13% Similarity=0.266 Sum_probs=74.5
Q ss_pred CCceEEEcCCCCCC------CHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCe-E
Q 011693 100 HGSEVYIGGIPHDA------SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGK-K 172 (479)
Q Consensus 100 ~~~~l~V~nLp~~~------t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~-~ 172 (479)
..++|||+|||+.+ |+++|+++|++||.|.+|.|+ +.+|+++|||||+|.+.++|.+|+..||+..|.|+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 36899999999999 789999999999999999988 46799999999999999999999999999999999 9
Q ss_pred EEEeecccc
Q 011693 173 IRCSTSQAK 181 (479)
Q Consensus 173 i~v~~~~~~ 181 (479)
|+|.++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999988754
No 244
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.71 E-value=2.6e-17 Score=139.45 Aligned_cols=83 Identities=23% Similarity=0.422 Sum_probs=79.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeec
Q 011693 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 178 (479)
...++|||+|||+++|+++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|.+||+.|++..|.|+.|+|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 011693 179 QAK 181 (479)
Q Consensus 179 ~~~ 181 (479)
.+.
T Consensus 148 ~~~ 150 (158)
T 2kn4_A 148 RYG 150 (158)
T ss_dssp CCS
T ss_pred CCC
Confidence 764
No 245
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=9.2e-18 Score=130.92 Aligned_cols=84 Identities=20% Similarity=0.350 Sum_probs=74.9
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhC--CCccCCeEEE
Q 011693 98 PPHGSEVYIGGIPHD-ASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN--NTEFKGKKIR 174 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~-~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~--~~~~~g~~i~ 174 (479)
...+++|||+|||++ +|+++|+++|++||.|.+|+|++ ++|||||+|.+.++|.+|++.|+ +..|.||.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345799999999998 99999999999999999999974 48999999999999999999875 4569999999
Q ss_pred EeecccccccccC
Q 011693 175 CSTSQAKYRLFIG 187 (479)
Q Consensus 175 v~~~~~~~~l~v~ 187 (479)
|.++..+..+..+
T Consensus 96 V~~a~~~~~~~~~ 108 (112)
T 1x4f_A 96 VDLSEKYKKLVSG 108 (112)
T ss_dssp EEEECSCSSSSCC
T ss_pred EEECccccccccC
Confidence 9999987776554
No 246
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.71 E-value=1.1e-17 Score=133.77 Aligned_cols=81 Identities=12% Similarity=0.196 Sum_probs=75.8
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCC---eEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEE
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGR---ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~---v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 350 (479)
..++|||+|||+++|+++|+++|+.||. |..|+|+.++. +.++|||||+|.+.++|.+||. ||+..|.|+.|+|.
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 3589999999999999999999999999 89999999988 6679999999999999999999 99999999999999
Q ss_pred eccCCC
Q 011693 351 LAKPQA 356 (479)
Q Consensus 351 ~a~~~~ 356 (479)
++.+..
T Consensus 94 ~a~~~~ 99 (118)
T 2db1_A 94 KSHRTE 99 (118)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997665
No 247
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.71 E-value=7.6e-17 Score=124.06 Aligned_cols=78 Identities=24% Similarity=0.452 Sum_probs=71.3
Q ss_pred CCccccEEEEcCCCC-CCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEE
Q 011693 271 GASQVKAVYVKNLPR-NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (479)
Q Consensus 271 ~~~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 349 (479)
....+++|||+|||+ ++++++|+++|++||.|.+|+|. +|||||+|.+.++|.+|+..||+..|.|++|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344568999999998 99999999999999999999993 699999999999999999999999999999999
Q ss_pred EeccCCC
Q 011693 350 SLAKPQA 356 (479)
Q Consensus 350 ~~a~~~~ 356 (479)
.+++++.
T Consensus 90 ~~a~~~~ 96 (97)
T 2xnq_A 90 EVSSSNA 96 (97)
T ss_dssp EECCCCC
T ss_pred EecCCCC
Confidence 9997653
No 248
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.71 E-value=8.9e-18 Score=122.99 Aligned_cols=75 Identities=15% Similarity=0.361 Sum_probs=71.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEec
Q 011693 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 277 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
+|||+|||+++|+++|+++|++||.|.+|.++.++.++.++|||||+|.+.++|.+|+.. ++..|.|++|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999999889999999999999999999994 889999999999875
No 249
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.5e-17 Score=130.46 Aligned_cols=82 Identities=21% Similarity=0.451 Sum_probs=76.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCcc--------CC
Q 011693 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF--------KG 170 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~--------~g 170 (479)
...++|||+|||+++|+++|+++|+.||.|..|+|+.++ +++++|||||+|.+.++|.+|++.||+..| .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 356899999999999999999999999999999999998 899999999999999999999999999999 57
Q ss_pred eEEEEeecccc
Q 011693 171 KKIRCSTSQAK 181 (479)
Q Consensus 171 ~~i~v~~~~~~ 181 (479)
+.|.|.++.+.
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 78888887643
No 250
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.71 E-value=4e-18 Score=139.30 Aligned_cols=80 Identities=16% Similarity=0.240 Sum_probs=73.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEecc
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (479)
..++|||+|||+++|+++|+++|++|| |++|+|+.++. +.++|||||+|.+.++|.+|| .+|+..|.+|.|+|.++.
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 347999999999999999999999999 67999999987 677999999999999999999 689999999999999987
Q ss_pred CCC
Q 011693 354 PQA 356 (479)
Q Consensus 354 ~~~ 356 (479)
+..
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 664
No 251
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1e-17 Score=133.94 Aligned_cols=80 Identities=21% Similarity=0.253 Sum_probs=73.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCe----eEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEE
Q 011693 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEV----TEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v----~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~ 174 (479)
...++|||+|||+++|+++|+++|++||.| ..|+|+.++ +|+++|||||+|.+.++|.+||+. ++..|.+|.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 457899999999999999999999999975 699999984 899999999999999999999964 99999999999
Q ss_pred Eeeccc
Q 011693 175 CSTSQA 180 (479)
Q Consensus 175 v~~~~~ 180 (479)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 987653
No 252
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=4.6e-17 Score=131.00 Aligned_cols=83 Identities=19% Similarity=0.342 Sum_probs=74.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEE
Q 011693 98 PPHGSEVYIGGIPHDASEHDLR----DFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~----~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i 173 (479)
.+..++|||+|||+++++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|.+|++.||+..|.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3457899999999999999876 6999999999998854 58899999999999999999999999999999999
Q ss_pred EEeecccccc
Q 011693 174 RCSTSQAKYR 183 (479)
Q Consensus 174 ~v~~~~~~~~ 183 (479)
+|.++..+..
T Consensus 103 ~V~~a~~~~~ 112 (127)
T 2a3j_A 103 VITFSETPQS 112 (127)
T ss_dssp EEEECCCCCH
T ss_pred EEEEccCcch
Confidence 9999986543
No 253
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.2e-18 Score=137.81 Aligned_cols=83 Identities=22% Similarity=0.300 Sum_probs=76.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
....++|||+|||+++|+++|+++|+.||.|..+.++.+..+++++|||||+|.+.++|.+||+ +++..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3457899999999999999999999999999997777777899999999999999999999997 999999999999998
Q ss_pred cccc
Q 011693 178 SQAK 181 (479)
Q Consensus 178 ~~~~ 181 (479)
+..+
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8754
No 254
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=3.1e-17 Score=127.63 Aligned_cols=75 Identities=21% Similarity=0.404 Sum_probs=70.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccC
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (479)
.++|||+|||.++|+++|+++|++||.|.+|+|++. +|||||+|.+.++|.+|+..||+..|.|++|+|.++++
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPE------KGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 489999999999999999999999999999999843 69999999999999999999999999999999999976
Q ss_pred C
Q 011693 355 Q 355 (479)
Q Consensus 355 ~ 355 (479)
+
T Consensus 101 ~ 101 (101)
T 2la4_A 101 R 101 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 255
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=3.8e-17 Score=126.70 Aligned_cols=79 Identities=22% Similarity=0.249 Sum_probs=71.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCC--CccCCeEEEE
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNN--TEFKGKKIRC 175 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~--~~~~g~~i~v 175 (479)
.++.++|||+|||+++|+++|+++|++||.|..|.|+++ +|||||+|.+.++|.+|++.|++ ..|.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345789999999999999999999999999999998863 79999999999999999998865 4599999999
Q ss_pred eeccccc
Q 011693 176 STSQAKY 182 (479)
Q Consensus 176 ~~~~~~~ 182 (479)
.++..+.
T Consensus 86 ~~a~~~~ 92 (104)
T 1wex_A 86 NYSTSKR 92 (104)
T ss_dssp EECSSSS
T ss_pred EEccCcc
Confidence 9998654
No 256
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=7.1e-17 Score=122.64 Aligned_cols=77 Identities=27% Similarity=0.533 Sum_probs=72.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
+...++|||+|||+++|+++|+++|++||.|..|+|+ ++||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4567999999999999999999999999999999997 67999999999999999999999999999999999
Q ss_pred ccccc
Q 011693 178 SQAKY 182 (479)
Q Consensus 178 ~~~~~ 182 (479)
+.++.
T Consensus 77 a~~~~ 81 (90)
T 2dnq_A 77 SKNKS 81 (90)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87654
No 257
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.70 E-value=6.6e-18 Score=132.77 Aligned_cols=82 Identities=11% Similarity=0.193 Sum_probs=76.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCC---eeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEE
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGE---VTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~---v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~ 174 (479)
....++|||+|||+++|+++|+++|+.||. |..|+|+.++. |+++|||||+|.+.++|.+||+ +++..|.||.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 345789999999999999999999999998 99999999987 9999999999999999999997 999999999999
Q ss_pred Eeecccc
Q 011693 175 CSTSQAK 181 (479)
Q Consensus 175 v~~~~~~ 181 (479)
|.++.+.
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9887653
No 258
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-17 Score=124.19 Aligned_cols=73 Identities=26% Similarity=0.491 Sum_probs=67.4
Q ss_pred cEEEEcCCCCCC------CHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCe-EEE
Q 011693 276 KAVYVKNLPRNV------TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQ-ALE 348 (479)
Q Consensus 276 ~~l~V~nLp~~~------t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~-~l~ 348 (479)
++|||+|||+.+ |+++|+++|++||.|.+|+|+ +.++.++|||||+|.+.++|.+|+..||+..|.|+ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 679999999999999999988 45667799999999999999999999999999999 887
Q ss_pred EE
Q 011693 349 CS 350 (479)
Q Consensus 349 v~ 350 (479)
|+
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 63
No 259
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=4.1e-17 Score=125.84 Aligned_cols=79 Identities=25% Similarity=0.432 Sum_probs=71.2
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEec
Q 011693 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
...++|||+|||+++|+++|+++|++||.|. +.++.+ .++|||||+|.+.++|.+|+..||+..|.|++|+|.++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3458999999999999999999999999996 666643 45799999999999999999999999999999999999
Q ss_pred cCCC
Q 011693 353 KPQA 356 (479)
Q Consensus 353 ~~~~ 356 (479)
+++.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 260
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.4e-17 Score=128.42 Aligned_cols=80 Identities=10% Similarity=0.203 Sum_probs=72.2
Q ss_pred ceEEEcCC----CCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCC----HHH----HHHHHH--HhCCCc
Q 011693 102 SEVYIGGI----PHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRN----VEL----ASKAID--KLNNTE 167 (479)
Q Consensus 102 ~~l~V~nL----p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~----~~~----A~~a~~--~~~~~~ 167 (479)
+.|||+|| |+.+++.+|+++|+.||+|.+|.++.|+.||+++|||||+|.+ +++ |.+|+. .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 322 888988 689999
Q ss_pred cCCeEEEEeecccc
Q 011693 168 FKGKKIRCSTSQAK 181 (479)
Q Consensus 168 ~~g~~i~v~~~~~~ 181 (479)
|.|+.|+|..-...
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999876543
No 261
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=1e-18 Score=139.84 Aligned_cols=84 Identities=23% Similarity=0.339 Sum_probs=79.3
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCCeEE--------EEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCe
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITK--------VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQ 345 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--------v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~ 345 (479)
+.++|||+|||+++|+++|+++|++||.|.. |+|+.++.++.++|||||+|.+.++|.+||..||+..|.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 4589999999999999999999999999999 99999988888899999999999999999999999999999
Q ss_pred EEEEEeccCCCc
Q 011693 346 ALECSLAKPQAD 357 (479)
Q Consensus 346 ~l~v~~a~~~~~ 357 (479)
+|+|.++.++..
T Consensus 86 ~l~V~~a~~~~~ 97 (116)
T 2lcw_A 86 PIKVSFATRRAD 97 (116)
Confidence 999999987754
No 262
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.5e-17 Score=124.65 Aligned_cols=78 Identities=24% Similarity=0.443 Sum_probs=70.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCC-eEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCC-ceecCeEEEEEe
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGR-ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK-YELDGQALECSL 351 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~-v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~-~~~~g~~l~v~~ 351 (479)
..++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..||+ ..|.|++|+|.+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 4589999999999999999999999999 6666663 379999999999999999999999 999999999999
Q ss_pred ccCCCcc
Q 011693 352 AKPQADQ 358 (479)
Q Consensus 352 a~~~~~~ 358 (479)
+.++..+
T Consensus 80 a~~~~~~ 86 (93)
T 2cqh_A 80 SVSKKLR 86 (93)
T ss_dssp CCCCCCC
T ss_pred ccCcccc
Confidence 9877543
No 263
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=6.9e-17 Score=121.37 Aligned_cols=75 Identities=24% Similarity=0.467 Sum_probs=70.4
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHh-CCceecCeEEEEEe
Q 011693 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT-EKYELDGQALECSL 351 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l-~~~~~~g~~l~v~~ 351 (479)
...++|||+|||.++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|+..| ++..|.|++|+|.|
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 44589999999999999999999999999999999974 699999999999999999998 99999999999999
Q ss_pred cc
Q 011693 352 AK 353 (479)
Q Consensus 352 a~ 353 (479)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 264
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.70 E-value=3.8e-17 Score=123.47 Aligned_cols=84 Identities=24% Similarity=0.355 Sum_probs=77.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeec
Q 011693 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 178 (479)
...++|||+|||+++|+++|+++|++| .|.+|+|. +++|||||+|.+.++|.+|++.|++..|.|+.|+|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 457899999999999999999999999 99999984 57999999999999999999999999999999999999
Q ss_pred ccccccccCCC
Q 011693 179 QAKYRLFIGNI 189 (479)
Q Consensus 179 ~~~~~l~v~~l 189 (479)
.....+++.|.
T Consensus 76 ~~~~~~~~~n~ 86 (88)
T 1wg1_A 76 PTDALLCSGPS 86 (88)
T ss_dssp CCCCCCSCCCT
T ss_pred CCCceEecCCC
Confidence 98888887764
No 265
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=6.7e-17 Score=125.73 Aligned_cols=79 Identities=32% Similarity=0.545 Sum_probs=73.1
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Q 011693 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (479)
Q Consensus 96 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v 175 (479)
..++..++|||+|||+++|+++|+++|++||.|.+|++. +++|||||+|.+.++|.+|++.|++..|.|+.|+|
T Consensus 22 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 95 (101)
T 2la4_A 22 SAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRT 95 (101)
T ss_dssp TSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCC
T ss_pred cCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 445567999999999999999999999999999999997 35899999999999999999999999999999999
Q ss_pred eeccc
Q 011693 176 STSQA 180 (479)
Q Consensus 176 ~~~~~ 180 (479)
.++.+
T Consensus 96 ~~a~~ 100 (101)
T 2la4_A 96 GWGKE 100 (101)
T ss_dssp CBCCC
T ss_pred EeccC
Confidence 98865
No 266
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=8.7e-17 Score=124.05 Aligned_cols=79 Identities=16% Similarity=0.386 Sum_probs=73.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccC--CeEEEE
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK--GKKIRC 175 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~--g~~i~v 175 (479)
+...++|||+|||+++|+++|+++|++||.|.+|.++.+ +|||||+|.+.++|.+|++.|++..|. |+.|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 456799999999999999999999999999999999764 789999999999999999999999999 999999
Q ss_pred eeccccc
Q 011693 176 STSQAKY 182 (479)
Q Consensus 176 ~~~~~~~ 182 (479)
.++.++.
T Consensus 88 ~~a~~~~ 94 (97)
T 1why_A 88 DFAKSGP 94 (97)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9998653
No 267
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=9.2e-17 Score=126.46 Aligned_cols=77 Identities=27% Similarity=0.440 Sum_probs=72.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCC-----eEE
Q 011693 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG-----KKI 173 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g-----~~i 173 (479)
...++|||+|||+++|+++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||+.||+..|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45789999999999999999999999999999999876 899999999999999999999999999 999
Q ss_pred EEeeccccc
Q 011693 174 RCSTSQAKY 182 (479)
Q Consensus 174 ~v~~~~~~~ 182 (479)
+|.++.++.
T Consensus 86 ~V~~a~~~~ 94 (108)
T 1x4c_A 86 RVKVDGPRS 94 (108)
T ss_dssp EEEESSCCS
T ss_pred EEEeCCCCC
Confidence 999998754
No 268
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-17 Score=131.28 Aligned_cols=82 Identities=11% Similarity=0.164 Sum_probs=76.3
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhhcCC---eEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEE
Q 011693 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGR---ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~---v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 349 (479)
....+|||+|||+++|+++|+++|+.||. |..|+|+.++. +.++|||||+|.+.++|.+||. +|+..|+|+.|+|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 34589999999999999999999999998 89999999988 7779999999999999999999 9999999999999
Q ss_pred EeccCCC
Q 011693 350 SLAKPQA 356 (479)
Q Consensus 350 ~~a~~~~ 356 (479)
.++.+..
T Consensus 87 ~~a~~~~ 93 (107)
T 2lmi_A 87 YEINNED 93 (107)
T ss_dssp EECCHHH
T ss_pred EECCHHH
Confidence 9998755
No 269
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.69 E-value=1.7e-17 Score=132.77 Aligned_cols=80 Identities=21% Similarity=0.369 Sum_probs=73.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCee--EEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVT--EVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~--~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v 175 (479)
+...++|||+|||+++|+++|+++|+.| .|+ +|+|+.++. |+++|||||+|.+.++|.+||+ +++..|.||.|.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 4567899999999999999999999999 677 999999987 9999999999999999999996 5789999999999
Q ss_pred eeccc
Q 011693 176 STSQA 180 (479)
Q Consensus 176 ~~~~~ 180 (479)
..+..
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88754
No 270
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.3e-17 Score=126.75 Aligned_cols=81 Identities=28% Similarity=0.554 Sum_probs=75.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEe
Q 011693 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (479)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~ 176 (479)
.+...++|||+|||+++|+++|+++|++||.|..|+|+.+ +|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4556899999999999999999999999999999999876 7899999999999999999999999999999999
Q ss_pred ecccccc
Q 011693 177 TSQAKYR 183 (479)
Q Consensus 177 ~~~~~~~ 183 (479)
++.+...
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9987643
No 271
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=5.3e-17 Score=125.09 Aligned_cols=82 Identities=24% Similarity=0.416 Sum_probs=72.9
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
....++|||+|||+++|+++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..||+..|.|++|+|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3456899999999999999999999999988666 34556689999999999999999999999999999999999
Q ss_pred ccCCCcc
Q 011693 352 AKPQADQ 358 (479)
Q Consensus 352 a~~~~~~ 358 (479)
+.++...
T Consensus 88 a~~~~~~ 94 (96)
T 1fjc_A 88 TGEKGGT 94 (96)
T ss_dssp CSSSCCC
T ss_pred cCCCCCC
Confidence 9877543
No 272
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.69 E-value=4.5e-17 Score=125.75 Aligned_cols=82 Identities=27% Similarity=0.486 Sum_probs=74.6
Q ss_pred ccccEEEEcCCCCCCCHHHHH----HHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEE
Q 011693 273 SQVKAVYVKNLPRNVTQDQLK----KLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~ 348 (479)
.++++|||+|||.++|+++|+ ++|++||.|.+|.|+. ++.++|||||+|.+.++|.+|+..||+..|.|++|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 345899999999999999999 9999999999999973 345579999999999999999999999999999999
Q ss_pred EEeccCCCc
Q 011693 349 CSLAKPQAD 357 (479)
Q Consensus 349 v~~a~~~~~ 357 (479)
|.++.+...
T Consensus 83 v~~a~~~~~ 91 (97)
T 1nu4_A 83 IQYAKTDSD 91 (97)
T ss_dssp EEECSSCCT
T ss_pred EEEccCCCc
Confidence 999988653
No 273
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=3.4e-17 Score=125.98 Aligned_cols=78 Identities=23% Similarity=0.417 Sum_probs=71.3
Q ss_pred ccccEEEEcCCCC-CCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 273 SQVKAVYVKNLPR-NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 273 ~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
.+.++|||+|||+ ++|+++|+++|++||.|.+|.|. +|||||+|.+.++|.+|+..||+..|.|++|+|.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 3458999999998 99999999999999999999994 68999999999999999999999999999999999
Q ss_pred ccCCCcc
Q 011693 352 AKPQADQ 358 (479)
Q Consensus 352 a~~~~~~ 358 (479)
+.+....
T Consensus 80 a~~~~~~ 86 (96)
T 2kvi_A 80 SSSNARP 86 (96)
T ss_dssp EECCCC-
T ss_pred cCcCCCC
Confidence 9876543
No 274
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=5e-17 Score=126.45 Aligned_cols=81 Identities=20% Similarity=0.400 Sum_probs=73.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
+...++|||+|||+++|+++|+++|++||.| +++.+ .+++++|||||+|.+.++|.+||+.|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4467999999999999999999999999977 56666 6799999999999999999999999999999999999999
Q ss_pred ccccc
Q 011693 178 SQAKY 182 (479)
Q Consensus 178 ~~~~~ 182 (479)
+.+..
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 98653
No 275
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=6.4e-18 Score=131.57 Aligned_cols=81 Identities=17% Similarity=0.314 Sum_probs=75.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeec
Q 011693 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 178 (479)
...++|||+|||+++|+++|+++|++||.|.. .++.+..+++++|||||+|.+.++|.+||+ |++..|.|+.|+|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35789999999999999999999999999988 677777789999999999999999999998 9999999999999998
Q ss_pred ccc
Q 011693 179 QAK 181 (479)
Q Consensus 179 ~~~ 181 (479)
.++
T Consensus 93 ~~~ 95 (101)
T 1fj7_A 93 KGR 95 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 764
No 276
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.3e-18 Score=135.79 Aligned_cols=83 Identities=17% Similarity=0.255 Sum_probs=76.2
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEec
Q 011693 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
....+|||+|||+++|+++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+||. ||+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 345899999999999999999999999999987777777788889999999999999999999 9999999999999999
Q ss_pred cCCC
Q 011693 353 KPQA 356 (479)
Q Consensus 353 ~~~~ 356 (479)
.++.
T Consensus 102 ~~~~ 105 (124)
T 1wel_A 102 TKKG 105 (124)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8754
No 277
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.4e-16 Score=124.25 Aligned_cols=79 Identities=16% Similarity=0.279 Sum_probs=71.2
Q ss_pred ccccEEEE--cCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCcee-----cCe
Q 011693 273 SQVKAVYV--KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL-----DGQ 345 (479)
Q Consensus 273 ~~~~~l~V--~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~-----~g~ 345 (479)
.++++||| +||++++|+++|+++|++||.|.+|.|+.+ ||||||+|.+.++|.+|+..||+..| .++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 34589999 679999999999999999999999999764 69999999999999999999999998 689
Q ss_pred EEEEEeccCCCc
Q 011693 346 ALECSLAKPQAD 357 (479)
Q Consensus 346 ~l~v~~a~~~~~ 357 (479)
+|.|.++.....
T Consensus 97 ~l~v~~a~~~p~ 108 (114)
T 2cq2_A 97 TLYLNFVEKVQW 108 (114)
T ss_dssp ECEEEEESCCCC
T ss_pred EEEEEecccCcc
Confidence 999999975543
No 278
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=9.5e-17 Score=126.82 Aligned_cols=77 Identities=21% Similarity=0.294 Sum_probs=71.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccC
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (479)
.++|||+|||+++|+++|+++|++||.|.+|.|+.. +|||||+|.+.++|.+||..||+..|.|++|+|.|+..
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG------GITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS------SSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 479999999999999999999999999999999863 69999999999999999999999999999999999976
Q ss_pred CCc
Q 011693 355 QAD 357 (479)
Q Consensus 355 ~~~ 357 (479)
...
T Consensus 84 ~~~ 86 (111)
T 1whx_A 84 GVF 86 (111)
T ss_dssp TTT
T ss_pred Ccc
Confidence 543
No 279
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.69 E-value=9.3e-17 Score=128.17 Aligned_cols=82 Identities=16% Similarity=0.316 Sum_probs=74.8
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEecc
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (479)
.+++|||+|||+++|+++|+++|++||.|.+|.|+.+.. ++|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPE---TRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTT---TTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 348999999999999999999999999999999997643 37999999999999999999999999999999999998
Q ss_pred CCCcc
Q 011693 354 PQADQ 358 (479)
Q Consensus 354 ~~~~~ 358 (479)
+....
T Consensus 84 ~~~~~ 88 (115)
T 3lqv_A 84 ANRAF 88 (115)
T ss_dssp HHHHT
T ss_pred CChhh
Confidence 75543
No 280
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.69 E-value=2.9e-17 Score=131.43 Aligned_cols=80 Identities=21% Similarity=0.299 Sum_probs=72.8
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCCeE--EEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRIT--KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~--~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
...+|||+|||+++|+++|+++|++| .|+ +|+|+.++. +.++|||||+|.+.++|.+||.. ++..|.||.|.|.+
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFK 117 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEE
Confidence 45899999999999999999999999 677 999999988 67799999999999999999985 77999999999999
Q ss_pred ccCCC
Q 011693 352 AKPQA 356 (479)
Q Consensus 352 a~~~~ 356 (479)
+.++.
T Consensus 118 a~~~e 122 (126)
T 2hgm_A 118 SSQEE 122 (126)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 87654
No 281
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.69 E-value=1.7e-16 Score=122.02 Aligned_cols=79 Identities=24% Similarity=0.381 Sum_probs=71.4
Q ss_pred hcCCCCCceEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEE
Q 011693 95 LALPPHGSEVYIGGIPH-DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (479)
Q Consensus 95 ~~~~~~~~~l~V~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i 173 (479)
....+..++|||+|||+ ++|+++|+++|++||.|.+|+|. +|||||+|.+.++|.+|++.+++..|.|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34466789999999998 99999999999999999999983 7899999999999999999999999999999
Q ss_pred EEeecccc
Q 011693 174 RCSTSQAK 181 (479)
Q Consensus 174 ~v~~~~~~ 181 (479)
+|.++..+
T Consensus 88 ~V~~a~~~ 95 (97)
T 2xnq_A 88 ILEVSSSN 95 (97)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 99998754
No 282
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.69 E-value=1.1e-17 Score=136.61 Aligned_cols=81 Identities=25% Similarity=0.333 Sum_probs=74.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
+...++|||+|||+++|+++|+++|++|| |++|+|++++. ++++|||||+|.+.++|++|| .+++..|.+|.|.|..
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 34578999999999999999999999999 77999999986 999999999999999999999 7899999999999988
Q ss_pred cccc
Q 011693 178 SQAK 181 (479)
Q Consensus 178 ~~~~ 181 (479)
+...
T Consensus 120 a~~~ 123 (139)
T 2hgn_A 120 NSTT 123 (139)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7654
No 283
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=7.3e-17 Score=125.81 Aligned_cols=82 Identities=23% Similarity=0.462 Sum_probs=75.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
+...++|||+|||+++|+++|+++|+.| ..|+++.++.+++++|||||+|.+.++|.+||+.|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4567999999999999999999999977 4788889988999999999999999999999999999999999999999
Q ss_pred ccccc
Q 011693 178 SQAKY 182 (479)
Q Consensus 178 ~~~~~ 182 (479)
+.++.
T Consensus 89 a~~~~ 93 (102)
T 2fc8_A 89 AKPKG 93 (102)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 98654
No 284
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=117.09 Aligned_cols=80 Identities=20% Similarity=0.324 Sum_probs=70.0
Q ss_pred CCCCceEEEcCCCCCCCHHH----HHHHHHhc-CCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 011693 98 PPHGSEVYIGGIPHDASEHD----LRDFCQSI-GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKK 172 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~----l~~~f~~~-G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~ 172 (479)
++..+.|||+|||+++++++ |+++|++| |+|.+| ++ |+|||.|.+.++|.+|++.|++..|.||.
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34445599999999999988 55899999 599998 33 99999999999999999999999999999
Q ss_pred EEEeecccccccccC
Q 011693 173 IRCSTSQAKYRLFIG 187 (479)
Q Consensus 173 i~v~~~~~~~~l~v~ 187 (479)
|+|.++..++.++..
T Consensus 76 i~v~~A~~~sd~~~~ 90 (96)
T 2diu_A 76 IIVSFTPKNRELCET 90 (96)
T ss_dssp CEEESSCCSCCCCCC
T ss_pred EEEEecCCCcceeEe
Confidence 999999988776543
No 285
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.68 E-value=9.9e-17 Score=137.64 Aligned_cols=85 Identities=15% Similarity=0.291 Sum_probs=79.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
+...++|||+|||+++|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|.+||+.|++..|.|+.|+|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4457899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cccccc
Q 011693 178 SQAKYR 183 (479)
Q Consensus 178 ~~~~~~ 183 (479)
+.....
T Consensus 164 a~~~~~ 169 (177)
T 2f3j_A 164 VASQID 169 (177)
T ss_dssp ESSGGG
T ss_pred ecCCCC
Confidence 876543
No 286
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=119.54 Aligned_cols=76 Identities=22% Similarity=0.444 Sum_probs=70.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHh-CCCccCCeEEEEe
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL-NNTEFKGKKIRCS 176 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~-~~~~~~g~~i~v~ 176 (479)
+...++|||+|||+++|+++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.| ++..|.|+.|+|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 445789999999999999999999999999999999873 799999999999999999988 9999999999998
Q ss_pred ecc
Q 011693 177 TSQ 179 (479)
Q Consensus 177 ~~~ 179 (479)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 863
No 287
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=123.30 Aligned_cols=80 Identities=23% Similarity=0.451 Sum_probs=72.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
....++|||+|||+++|+++|+++|++||.|. +.++. ++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34578999999999999999999999999997 66665 46899999999999999999999999999999999999
Q ss_pred ccccc
Q 011693 178 SQAKY 182 (479)
Q Consensus 178 ~~~~~ 182 (479)
+.++.
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87653
No 288
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2e-17 Score=132.06 Aligned_cols=85 Identities=22% Similarity=0.273 Sum_probs=73.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
....++|||+|||+++|+++|+++|++||.|..|.+..+..+++++|||||+|.+.++|.+||+.|++..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34579999999999999999999999999994333222223689999999999999999999999999999999999999
Q ss_pred ccccc
Q 011693 178 SQAKY 182 (479)
Q Consensus 178 ~~~~~ 182 (479)
+.+..
T Consensus 102 a~~~~ 106 (115)
T 2cpx_A 102 GKNKK 106 (115)
T ss_dssp CCCCS
T ss_pred ccCCC
Confidence 98654
No 289
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.68 E-value=2.2e-16 Score=126.07 Aligned_cols=80 Identities=23% Similarity=0.305 Sum_probs=72.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccE-EEEEeCChHHHHHHHHHhCCceecC--eEEEEEe
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRI-GFVHFAERSSAMKALKNTEKYELDG--QALECSL 351 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~-afV~F~~~~~A~~A~~~l~~~~~~g--~~l~v~~ 351 (479)
...|||+||++.+|+++|+++|++||.|.+|+|+.+. +|| |||+|.+.++|.+|++.|||..|.+ +.|+|.|
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 3678899999999999999999999999999998643 677 9999999999999999999999998 9999999
Q ss_pred ccCCCccC
Q 011693 352 AKPQADQK 359 (479)
Q Consensus 352 a~~~~~~~ 359 (479)
+++....-
T Consensus 103 ak~~~l~v 110 (130)
T 3zzy_A 103 SKLTSLNV 110 (130)
T ss_dssp CSCSSCCC
T ss_pred cCCCceeE
Confidence 99876543
No 290
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.3e-16 Score=120.39 Aligned_cols=79 Identities=32% Similarity=0.513 Sum_probs=72.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEe
Q 011693 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (479)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~ 176 (479)
.+...++|||+|||+++|+++|+++|++||.|..|.|++ +||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 345679999999999999999999999999999999974 399999999999999999999999999999999
Q ss_pred ecccccc
Q 011693 177 TSQAKYR 183 (479)
Q Consensus 177 ~~~~~~~ 183 (479)
++.++..
T Consensus 78 ~a~~~~~ 84 (92)
T 2dgt_A 78 LSTSRLR 84 (92)
T ss_dssp ESSCCCS
T ss_pred EccCCCC
Confidence 9987543
No 291
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.3e-16 Score=119.81 Aligned_cols=77 Identities=27% Similarity=0.470 Sum_probs=71.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
+...++|||+|||+++|+++|+++|++||.|..|+|++ +||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45679999999999999999999999999999999974 3999999999999999999999999999999999
Q ss_pred ccccc
Q 011693 178 SQAKY 182 (479)
Q Consensus 178 ~~~~~ 182 (479)
+.+..
T Consensus 78 a~~~~ 82 (90)
T 2dnp_A 78 STKGQ 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87653
No 292
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=3.2e-18 Score=136.91 Aligned_cols=84 Identities=21% Similarity=0.446 Sum_probs=79.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCeeE--------EEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCC
Q 011693 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTE--------VRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG 170 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g 170 (479)
.+.++|||+|||+++|+++|+++|++||.|.. |+|+.++.+++++|||||+|.+.++|.+|++.|++..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35789999999999999999999999999999 9999998899999999999999999999999999999999
Q ss_pred eEEEEeeccccc
Q 011693 171 KKIRCSTSQAKY 182 (479)
Q Consensus 171 ~~i~v~~~~~~~ 182 (479)
+.|+|.++.++.
T Consensus 85 ~~l~V~~a~~~~ 96 (116)
T 2lcw_A 85 NPIKVSFATRRA 96 (116)
Confidence 999999987653
No 293
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.67 E-value=7.3e-17 Score=125.79 Aligned_cols=82 Identities=16% Similarity=0.327 Sum_probs=75.8
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEec
Q 011693 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
...++|||+|||+++|+++|+++|++||.|.+|+|+.++ ++.++|||||+|.+.++|.+|+. ++..|+|++|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 345899999999999999999999999999999999998 77789999999999999999999 899999999999999
Q ss_pred cCCCc
Q 011693 353 KPQAD 357 (479)
Q Consensus 353 ~~~~~ 357 (479)
.++..
T Consensus 84 ~~~~~ 88 (102)
T 2xs2_A 84 IRKQN 88 (102)
T ss_dssp EECC-
T ss_pred CcCcc
Confidence 87654
No 294
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.67 E-value=8e-17 Score=124.34 Aligned_cols=83 Identities=19% Similarity=0.405 Sum_probs=75.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEE
Q 011693 98 PPHGSEVYIGGIPHDASEHDLR----DFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~----~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i 173 (479)
.+..++|||+|||+++|+++|+ ++|++||.|..|.++. ++.++|||||+|.+.++|.+|++.|++..|.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4567999999999999999999 9999999999999874 47889999999999999999999999999999999
Q ss_pred EEeecccccc
Q 011693 174 RCSTSQAKYR 183 (479)
Q Consensus 174 ~v~~~~~~~~ 183 (479)
+|.++.+...
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999987643
No 295
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.5e-16 Score=120.62 Aligned_cols=78 Identities=21% Similarity=0.323 Sum_probs=68.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEecc
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (479)
..++|||+|||+++|+++|+++|++||.|.+| +.++.++. ||||+|.+.++|.+||. ||+..|.|+.|.|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 34799999999999999999999999999987 44444433 99999999999999999 99999999999999887
Q ss_pred CCCc
Q 011693 354 PQAD 357 (479)
Q Consensus 354 ~~~~ 357 (479)
++..
T Consensus 81 ~~~~ 84 (94)
T 2e5g_A 81 QKEF 84 (94)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 6654
No 296
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.67 E-value=3.2e-17 Score=127.80 Aligned_cols=80 Identities=30% Similarity=0.567 Sum_probs=75.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 179 (479)
..++|||+|||+++|+++|+++|++||.|.+|+|+.++ +++++|||||+|.+.++|.+|++ ++..|.|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 46899999999999999999999999999999999998 89999999999999999999996 9999999999998887
Q ss_pred ccc
Q 011693 180 AKY 182 (479)
Q Consensus 180 ~~~ 182 (479)
++.
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 554
No 297
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.6e-16 Score=121.14 Aligned_cols=79 Identities=15% Similarity=0.326 Sum_probs=72.3
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCCeEEE-EecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEec
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v-~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
..++|||+|||+++|+++|+++|++||.|.+| .|+.++.+ +.|||+|.+.++|.+||..||+..|.|++|+|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34899999999999999999999999999999 48887644 34999999999999999999999999999999999
Q ss_pred cCCC
Q 011693 353 KPQA 356 (479)
Q Consensus 353 ~~~~ 356 (479)
.++.
T Consensus 90 ~~~~ 93 (96)
T 2e44_A 90 PDEM 93 (96)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 8874
No 298
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.67 E-value=1.6e-16 Score=136.38 Aligned_cols=86 Identities=28% Similarity=0.432 Sum_probs=79.5
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEE
Q 011693 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (479)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 350 (479)
.....++|||+|||+.+|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|.+||..||+..|.|++|+|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 33456899999999999999999999999999999999998 77779999999999999999999999999999999999
Q ss_pred eccCCCc
Q 011693 351 LAKPQAD 357 (479)
Q Consensus 351 ~a~~~~~ 357 (479)
++.+...
T Consensus 163 ~a~~~~~ 169 (177)
T 2f3j_A 163 LVASQID 169 (177)
T ss_dssp EESSGGG
T ss_pred EecCCCC
Confidence 9977643
No 299
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.8e-17 Score=130.58 Aligned_cols=80 Identities=21% Similarity=0.228 Sum_probs=73.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCe----EEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 276 KAVYVKNLPRNVTQDQLKKLFEHHGRI----TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l~~~F~~~G~v----~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
.+|||+|||+++|+++|+++|++||.| ..|+|+.++ ++.++|||||+|.+.++|.+||.. |+..|.+|.|.|..
T Consensus 24 ~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~ 101 (123)
T 2dha_A 24 VIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFR 101 (123)
T ss_dssp CEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEE
Confidence 799999999999999999999999975 689999985 667799999999999999999996 99999999999999
Q ss_pred ccCCCc
Q 011693 352 AKPQAD 357 (479)
Q Consensus 352 a~~~~~ 357 (479)
+.+...
T Consensus 102 a~~~e~ 107 (123)
T 2dha_A 102 STAAEV 107 (123)
T ss_dssp ECHHHH
T ss_pred CCHHHH
Confidence 876553
No 300
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.67 E-value=1.7e-16 Score=126.35 Aligned_cols=75 Identities=17% Similarity=0.298 Sum_probs=67.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeE-----EEE
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQA-----LEC 349 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~-----l~v 349 (479)
.++|||+|||+++|+++|+++|++||.|.+|.|+.+ |||||+|.+.++|.+||+.||+..|.|++ |+|
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 489999999999999999999999999999999876 89999999999999999999999999988 777
Q ss_pred EeccCCC
Q 011693 350 SLAKPQA 356 (479)
Q Consensus 350 ~~a~~~~ 356 (479)
..+.++.
T Consensus 89 ~~~~~~~ 95 (115)
T 3beg_B 89 KVDGPRS 95 (115)
T ss_dssp EECC---
T ss_pred ccCCCCC
Confidence 7776644
No 301
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.67 E-value=9.7e-17 Score=125.05 Aligned_cols=79 Identities=16% Similarity=0.204 Sum_probs=72.1
Q ss_pred cEEEEcCC----CCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCC----hHH----HHHHHH--HhCCce
Q 011693 276 KAVYVKNL----PRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE----RSS----AMKALK--NTEKYE 341 (479)
Q Consensus 276 ~~l~V~nL----p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~----~~~----A~~A~~--~l~~~~ 341 (479)
..|||+|| |+.+++..|+++|+.||.|.+|.++.|+.|+.++|||||+|.+ +++ |.+|+. .||+..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 888988 789999
Q ss_pred ecCeEEEEEeccC
Q 011693 342 LDGQALECSLAKP 354 (479)
Q Consensus 342 ~~g~~l~v~~a~~ 354 (479)
|.|++|+|.+-..
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998654
No 302
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.67 E-value=2.4e-16 Score=123.78 Aligned_cols=78 Identities=27% Similarity=0.503 Sum_probs=72.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEe
Q 011693 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (479)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~ 176 (479)
.....++|||+|||+++|+++|+++|++||.|..|.|+ +|||||+|.+.++|.+|++.|++..|.|+.|.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 35567999999999999999999999999999999997 7899999999999999999999999999999999
Q ss_pred eccccc
Q 011693 177 TSQAKY 182 (479)
Q Consensus 177 ~~~~~~ 182 (479)
++.+..
T Consensus 99 ~a~~~~ 104 (108)
T 2jvo_A 99 YSKLPA 104 (108)
T ss_dssp SCSCCC
T ss_pred EecCCC
Confidence 987643
No 303
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.67 E-value=3.3e-16 Score=122.22 Aligned_cols=76 Identities=18% Similarity=0.397 Sum_probs=70.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeec
Q 011693 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 178 (479)
...++|||+|||+++|+++|+++|++||.|..|.|+ ++||||+|.+.++|.+||+.|++..|.|+.|.|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 457899999999999999999999999999999986 459999999999999999999999999999999999
Q ss_pred cccc
Q 011693 179 QAKY 182 (479)
Q Consensus 179 ~~~~ 182 (479)
.+..
T Consensus 81 ~~~~ 84 (103)
T 2dgu_A 81 KPPD 84 (103)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 7653
No 304
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.2e-15 Score=117.48 Aligned_cols=78 Identities=21% Similarity=0.336 Sum_probs=70.8
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEec
Q 011693 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
...++|||+|| ++|+++|+++|++||.|.+|.|.. ++|||||+|.+.++|.+||..||+..|.|++|+|.++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP------PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 34589999996 899999999999999999999953 3799999999999999999999999999999999999
Q ss_pred cCCCcc
Q 011693 353 KPQADQ 358 (479)
Q Consensus 353 ~~~~~~ 358 (479)
.++...
T Consensus 85 ~~~~~~ 90 (97)
T 1x5p_A 85 RKQPML 90 (97)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 877543
No 305
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.67 E-value=3.9e-16 Score=129.45 Aligned_cols=80 Identities=21% Similarity=0.271 Sum_probs=72.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecC--eEEEEEec
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG--QALECSLA 352 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g--~~l~v~~a 352 (479)
..+|||+||++.+|+++|+++|++||.|.+|+|+.++ ++|||||+|.+.++|.+|++.|||..|.+ ++|+|.|+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 4679999999999999999999999999999997543 37899999999999999999999999965 99999999
Q ss_pred cCCCcc
Q 011693 353 KPQADQ 358 (479)
Q Consensus 353 ~~~~~~ 358 (479)
+++...
T Consensus 122 k~~~l~ 127 (164)
T 1sjr_A 122 KLTSLN 127 (164)
T ss_dssp SSSSCC
T ss_pred cCCccc
Confidence 987543
No 306
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.9e-16 Score=115.60 Aligned_cols=74 Identities=23% Similarity=0.397 Sum_probs=66.0
Q ss_pred ccE-EEEcCCCCCCCHHH----HHHHHhhc-CCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEE
Q 011693 275 VKA-VYVKNLPRNVTQDQ----LKKLFEHH-GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (479)
Q Consensus 275 ~~~-l~V~nLp~~~t~~~----l~~~F~~~-G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~ 348 (479)
+.+ |||+|||+++++++ |+++|++| |.|.+|. .|+|||+|.+.++|.+|++.||+..|.||+|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----------GCSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----------cCEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 455 99999999999987 55899999 5999981 29999999999999999999999999999999
Q ss_pred EEeccCCCcc
Q 011693 349 CSLAKPQADQ 358 (479)
Q Consensus 349 v~~a~~~~~~ 358 (479)
|.+|+.+..-
T Consensus 78 v~~A~~~sd~ 87 (96)
T 2diu_A 78 VSFTPKNREL 87 (96)
T ss_dssp EESSCCSCCC
T ss_pred EEecCCCcce
Confidence 9999877653
No 307
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.3e-16 Score=125.97 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=70.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 179 (479)
..++|||+|||+++|+++|+++|++||.|..|.|+. +++||||+|.+.++|.+|++.||+..|.|+.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 368999999999999999999999999999999874 57899999999999999999999999999999999986
Q ss_pred c
Q 011693 180 A 180 (479)
Q Consensus 180 ~ 180 (479)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 5
No 308
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.66 E-value=3.2e-16 Score=139.68 Aligned_cols=84 Identities=19% Similarity=0.271 Sum_probs=78.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEec
Q 011693 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
.+.++|||+|||+++|+++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|.+||..+|+..+.|+.|+|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCC
Q 011693 353 KPQA 356 (479)
Q Consensus 353 ~~~~ 356 (479)
....
T Consensus 93 ~~~~ 96 (213)
T 4f02_A 93 QRDP 96 (213)
T ss_dssp CCCT
T ss_pred cccc
Confidence 7654
No 309
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.66 E-value=5.5e-16 Score=117.01 Aligned_cols=75 Identities=23% Similarity=0.415 Sum_probs=63.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCce--ecCeEEEEEe
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE--LDGQALECSL 351 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~--~~g~~l~v~~ 351 (479)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.+ +||||||+|.+.++|.+ +++.. +.|++|.|.+
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISN 80 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEE
Confidence 4489999999999999999999999999999999986 48999999999999984 45544 5699999999
Q ss_pred ccCCCc
Q 011693 352 AKPQAD 357 (479)
Q Consensus 352 a~~~~~ 357 (479)
+.++..
T Consensus 81 a~~k~~ 86 (89)
T 3d2w_A 81 AEPKHN 86 (89)
T ss_dssp CC----
T ss_pred cCCCCc
Confidence 988754
No 310
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=2e-16 Score=121.62 Aligned_cols=76 Identities=26% Similarity=0.444 Sum_probs=69.9
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEe
Q 011693 98 PPHGSEVYIGGIPH-DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (479)
Q Consensus 98 ~~~~~~l~V~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~ 176 (479)
.++.++|||+|||+ ++|+++|+++|++||.|.+|.|. +|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45689999999999 99999999999999999999984 7899999999999999999999999999999999
Q ss_pred ecccc
Q 011693 177 TSQAK 181 (479)
Q Consensus 177 ~~~~~ 181 (479)
++.+.
T Consensus 79 ~a~~~ 83 (96)
T 2kvi_A 79 VSSSN 83 (96)
T ss_dssp EEECC
T ss_pred EcCcC
Confidence 98754
No 311
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.65 E-value=2.6e-16 Score=118.90 Aligned_cols=75 Identities=23% Similarity=0.394 Sum_probs=69.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccC
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (479)
.++|||+|||+++|+++|+++|++| .|.+|+|. .++|||||+|.+.++|.+|+..||+..|.|++|+|.++..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 3799999999999999999999999 99999995 4589999999999999999999999999999999999866
Q ss_pred CC
Q 011693 355 QA 356 (479)
Q Consensus 355 ~~ 356 (479)
..
T Consensus 78 ~~ 79 (88)
T 1wg1_A 78 DA 79 (88)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 312
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.2e-16 Score=120.69 Aligned_cols=79 Identities=18% Similarity=0.243 Sum_probs=72.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEE-EEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEV-RIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v-~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
...++|||+|||+++|+++|+++|++||.|.+| .|+.++.++. |||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 347899999999999999999999999999999 5888765443 99999999999999999999999999999999
Q ss_pred cccc
Q 011693 178 SQAK 181 (479)
Q Consensus 178 ~~~~ 181 (479)
+.++
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 8765
No 313
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7.9e-16 Score=119.10 Aligned_cols=76 Identities=25% Similarity=0.373 Sum_probs=70.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhc--CCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEe
Q 011693 99 PHGSEVYIGGIPHDASEHDLRDFCQSI--GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~ 176 (479)
...++|||+|||+++|+++|+++|++| |.|..|++. +|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 357899999999999999999999999 999998874 6799999999999999999999999999999999
Q ss_pred eccccc
Q 011693 177 TSQAKY 182 (479)
Q Consensus 177 ~~~~~~ 182 (479)
++.++.
T Consensus 85 ~a~~~~ 90 (99)
T 2cpd_A 85 LAKPVD 90 (99)
T ss_dssp CCCCCC
T ss_pred ECCCCC
Confidence 998654
No 314
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.65 E-value=4.2e-16 Score=130.67 Aligned_cols=80 Identities=24% Similarity=0.451 Sum_probs=74.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
....++|||+|||+++|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 445799999999999999999999999999999999886 589999999999999999999999999999999999
Q ss_pred ccccc
Q 011693 178 SQAKY 182 (479)
Q Consensus 178 ~~~~~ 182 (479)
+.+++
T Consensus 145 a~~~~ 149 (150)
T 2i2y_A 145 SNGEK 149 (150)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87653
No 315
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=1.1e-16 Score=123.30 Aligned_cols=77 Identities=17% Similarity=0.360 Sum_probs=70.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 179 (479)
..++|||+|||+++|+++|+++|+.||.|..+ ..+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.++.
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 46899999999999999999999999988766 3468899999999999999999999999999999999999987
Q ss_pred cc
Q 011693 180 AK 181 (479)
Q Consensus 180 ~~ 181 (479)
++
T Consensus 90 ~~ 91 (96)
T 1fjc_A 90 EK 91 (96)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 316
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=8.4e-16 Score=122.31 Aligned_cols=78 Identities=22% Similarity=0.257 Sum_probs=70.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccE-EEEEeCChHHHHHHHHHhCCceecC--eEEEEEe
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRI-GFVHFAERSSAMKALKNTEKYELDG--QALECSL 351 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~-afV~F~~~~~A~~A~~~l~~~~~~g--~~l~v~~ 351 (479)
...|||+||++.+|+++|+++|++||.|.+|+|+.. .|| |||+|.+.++|..|++.|||..|.| +.|+|.+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 356789999999999999999999999999999752 386 9999999999999999999999987 6999999
Q ss_pred ccCCCcc
Q 011693 352 AKPQADQ 358 (479)
Q Consensus 352 a~~~~~~ 358 (479)
|+++...
T Consensus 99 Ak~~~l~ 105 (124)
T 2e5i_A 99 ARPTRLN 105 (124)
T ss_dssp CSCSCCC
T ss_pred ecCCcce
Confidence 9987643
No 317
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.9e-16 Score=124.09 Aligned_cols=78 Identities=27% Similarity=0.450 Sum_probs=68.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC---CCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Q 011693 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS---SENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v 175 (479)
...++|||+|||+++|+++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|.+||+.++ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4578999999999999999999999999999 888888877 7999999999999999999999883 366666666
Q ss_pred eecc
Q 011693 176 STSQ 179 (479)
Q Consensus 176 ~~~~ 179 (479)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 5443
No 318
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.65 E-value=6.9e-17 Score=134.26 Aligned_cols=86 Identities=22% Similarity=0.311 Sum_probs=72.4
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEE--EecCC---CCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEE
Q 011693 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKV--VVPPA---KPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQAL 347 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v--~i~~~---~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l 347 (479)
.++++|||+|||+++|+++|+++|++||.|..+ +++.+ ..++.++|||||+|.+.++|.+||..||+..|.|++|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 345899999999999999999999999998764 11111 2345668999999999999999999999999999999
Q ss_pred EEEeccCCCcc
Q 011693 348 ECSLAKPQADQ 358 (479)
Q Consensus 348 ~v~~a~~~~~~ 358 (479)
+|.++++...+
T Consensus 123 ~V~~a~~~~~~ 133 (143)
T 3egn_A 123 VVQFARSARPK 133 (143)
T ss_dssp EEEECCCSCC-
T ss_pred EEEECCCCCCc
Confidence 99999876543
No 319
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.65 E-value=7.1e-16 Score=119.77 Aligned_cols=83 Identities=18% Similarity=0.242 Sum_probs=73.3
Q ss_pred cccEEEEcCCCC-----CCCHHHHHHHHhhcCCeEEEEecCCCCC-CCcccEEEEEeCChHHHHHHHHHhCCceecCeEE
Q 011693 274 QVKAVYVKNLPR-----NVTQDQLKKLFEHHGRITKVVVPPAKPG-QEKNRIGFVHFAERSSAMKALKNTEKYELDGQAL 347 (479)
Q Consensus 274 ~~~~l~V~nLp~-----~~t~~~l~~~F~~~G~v~~v~i~~~~~~-~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l 347 (479)
++++|+|.||.. +.++++|+++|++||.|.+|.|+.++.+ +.++|||||+|.+.++|.+|+..|||..|.||.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 458999999963 2378999999999999999999998754 5679999999999999999999999999999999
Q ss_pred EEEeccCCC
Q 011693 348 ECSLAKPQA 356 (479)
Q Consensus 348 ~v~~a~~~~ 356 (479)
+|.++.+..
T Consensus 87 ~v~~a~~~~ 95 (105)
T 2pe8_A 87 KACFYNLDK 95 (105)
T ss_dssp EEEECCHHH
T ss_pred EEEEcCHHH
Confidence 999997643
No 320
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.8e-16 Score=120.17 Aligned_cols=78 Identities=24% Similarity=0.434 Sum_probs=70.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCC-CccCCeEEEE
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGE-VTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNN-TEFKGKKIRC 175 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~-v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~-~~~~g~~i~v 175 (479)
+...++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||+ ..|.|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 456789999999999999999999999999 6666553 489999999999999999999999 9999999999
Q ss_pred eeccccc
Q 011693 176 STSQAKY 182 (479)
Q Consensus 176 ~~~~~~~ 182 (479)
.++.++.
T Consensus 78 ~~a~~~~ 84 (93)
T 2cqh_A 78 DYSVSKK 84 (93)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9997653
No 321
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=5.3e-16 Score=118.78 Aligned_cols=77 Identities=21% Similarity=0.427 Sum_probs=69.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeec
Q 011693 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 178 (479)
...++|||+|||+++|+++|+++|++||.|.+| +.++.+++ ||||+|.+.++|.+||+ |++..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 356899999999999999999999999999987 66666665 99999999999999998 9999999999999988
Q ss_pred ccc
Q 011693 179 QAK 181 (479)
Q Consensus 179 ~~~ 181 (479)
.++
T Consensus 80 ~~~ 82 (94)
T 2e5g_A 80 EQK 82 (94)
T ss_dssp CCS
T ss_pred CcC
Confidence 654
No 322
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.64 E-value=6.2e-16 Score=122.21 Aligned_cols=74 Identities=23% Similarity=0.403 Sum_probs=69.8
Q ss_pred CCceEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeec
Q 011693 100 HGSEVYIGGIPHD-ASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (479)
Q Consensus 100 ~~~~l~V~nLp~~-~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 178 (479)
..++|||+|||++ +|+++|+++|++||.|..|.| ++|||||+|.+.++|.+|++.|++..|.|+.|+|.++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4689999999999 999999999999999999998 4899999999999999999999999999999999998
Q ss_pred ccc
Q 011693 179 QAK 181 (479)
Q Consensus 179 ~~~ 181 (479)
...
T Consensus 98 ~~~ 100 (110)
T 1wf1_A 98 GEP 100 (110)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 323
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.1e-16 Score=117.86 Aligned_cols=77 Identities=23% Similarity=0.435 Sum_probs=67.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccC
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (479)
+++|||+|||+++|+++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|++|+.. ...+.+++|.|.++.+
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCC
Confidence 489999999999999999999999999999999876 489999999999999865332 3456899999999988
Q ss_pred CCcc
Q 011693 355 QADQ 358 (479)
Q Consensus 355 ~~~~ 358 (479)
+...
T Consensus 78 ~~~~ 81 (88)
T 1wf0_A 78 KHNS 81 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 324
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6e-16 Score=120.63 Aligned_cols=77 Identities=19% Similarity=0.306 Sum_probs=68.4
Q ss_pred CCCCCceEEE--cCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCcc-----C
Q 011693 97 LPPHGSEVYI--GGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF-----K 169 (479)
Q Consensus 97 ~~~~~~~l~V--~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~-----~ 169 (479)
...+.++||| +||++++|+++|+++|++||.|.+|.|+. .+|||||+|.+.++|.+|++.||+..| .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 3445789999 77999999999999999999999998764 379999999999999999999999988 6
Q ss_pred CeEEEEeecc
Q 011693 170 GKKIRCSTSQ 179 (479)
Q Consensus 170 g~~i~v~~~~ 179 (479)
++.|.|.++.
T Consensus 95 g~~l~v~~a~ 104 (114)
T 2cq2_A 95 KITLYLNFVE 104 (114)
T ss_dssp EEECEEEEES
T ss_pred CcEEEEEecc
Confidence 8889888765
No 325
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.63 E-value=1.8e-15 Score=131.80 Aligned_cols=120 Identities=14% Similarity=0.200 Sum_probs=92.1
Q ss_pred HhHHHHHHHhccCCCcccCCCCCeeeeCCCCCCCCC-----CCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecC
Q 011693 235 HKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS-----GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPP 309 (479)
Q Consensus 235 ~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~ 309 (479)
...+..|+.......+.+......+........+.. .....++|||+|||+++|+++|+++|++||.|.+|+|++
T Consensus 64 ~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~ 143 (193)
T 2voo_A 64 FNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRR 143 (193)
T ss_dssp HHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEE
T ss_pred HHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEE
Confidence 455666666654455566666666665532222211 223458999999999999999999999999999999999
Q ss_pred CCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccCCC
Q 011693 310 AKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA 356 (479)
Q Consensus 310 ~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 356 (479)
+.. +.++|||||+|.+.++|.+||..++ ..|.|++|.|.++..-.
T Consensus 144 ~~~-~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y~ 188 (193)
T 2voo_A 144 TLH-KAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDYF 188 (193)
T ss_dssp CTT-CCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC-
T ss_pred CCC-CCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHHH
Confidence 875 5669999999999999999998654 59999999999987644
No 326
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.63 E-value=9.7e-16 Score=131.27 Aligned_cols=83 Identities=22% Similarity=0.326 Sum_probs=78.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccC
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (479)
.++|||+|||+++|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|.+|+..|++..|.|++|.|.++.+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 37999999999999999999999999999999999998888899999999999999999999999999999999999987
Q ss_pred CCc
Q 011693 355 QAD 357 (479)
Q Consensus 355 ~~~ 357 (479)
...
T Consensus 83 ~~~ 85 (168)
T 1b7f_A 83 GGE 85 (168)
T ss_dssp CSS
T ss_pred Ccc
Confidence 653
No 327
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.63 E-value=1.2e-15 Score=130.45 Aligned_cols=83 Identities=25% Similarity=0.427 Sum_probs=78.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccC
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (479)
.++|||+|||+++|+++|+++|+.||.|.+|++++++.++.++|||||+|.+.++|.+|+..||+..|.|++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 37999999999999999999999999999999999998888899999999999999999999999999999999999987
Q ss_pred CCc
Q 011693 355 QAD 357 (479)
Q Consensus 355 ~~~ 357 (479)
...
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 653
No 328
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.63 E-value=6e-17 Score=134.66 Aligned_cols=81 Identities=21% Similarity=0.335 Sum_probs=72.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEE--------EEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccC
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEV--------RIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK 169 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v--------~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~ 169 (479)
....++|||+|||+++|+++|+++|++||.|..| ++. .+++++|||||+|.+.++|.+||+.||+..|.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 4457899999999999999999999999998774 333 36899999999999999999999999999999
Q ss_pred CeEEEEeecccc
Q 011693 170 GKKIRCSTSQAK 181 (479)
Q Consensus 170 g~~i~v~~~~~~ 181 (479)
|+.|.|.++.+.
T Consensus 119 g~~l~V~~a~~~ 130 (143)
T 3egn_A 119 GKPMVVQFARSA 130 (143)
T ss_dssp TEECEEEECCCS
T ss_pred CcEEEEEECCCC
Confidence 999999998754
No 329
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.4e-15 Score=129.85 Aligned_cols=82 Identities=16% Similarity=0.400 Sum_probs=78.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
....++|||+|||+++|+++|+++|++||.|.+|.++.++.++.++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 011693 178 SQ 179 (479)
Q Consensus 178 ~~ 179 (479)
+.
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 85
No 330
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.63 E-value=1.4e-15 Score=126.15 Aligned_cols=79 Identities=13% Similarity=0.101 Sum_probs=71.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCC--eEEEEee
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG--KKIRCST 177 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g--~~i~v~~ 177 (479)
...+|||+||++.+|+++|+++|++||.|.+|+|... +++|||||+|.+.++|.+|++.|++..|.| +.|+|.+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 3456899999999999999999999999999999754 368999999999999999999999999965 9999999
Q ss_pred ccccc
Q 011693 178 SQAKY 182 (479)
Q Consensus 178 ~~~~~ 182 (479)
+.++.
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 98753
No 331
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.62 E-value=1.5e-15 Score=121.24 Aligned_cols=79 Identities=14% Similarity=0.154 Sum_probs=71.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcce-EEEEeCCHHHHHHHHHHhCCCccCC--eEEEE
Q 011693 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGF-AFVTFRNVELASKAIDKLNNTEFKG--KKIRC 175 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~-afV~F~~~~~A~~a~~~~~~~~~~g--~~i~v 175 (479)
..--+|||+||++.+|+++|+++|++||.|.+|+|+.. ++|| |||+|.+.++|.+|++.|+|..|.| +.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 34456789999999999999999999999999998864 3677 9999999999999999999999998 99999
Q ss_pred eeccccc
Q 011693 176 STSQAKY 182 (479)
Q Consensus 176 ~~~~~~~ 182 (479)
.++++..
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9998764
No 332
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.62 E-value=2.1e-15 Score=117.12 Aligned_cols=82 Identities=21% Similarity=0.297 Sum_probs=73.8
Q ss_pred CCCceEEEcCCCC-----CCCHHHHHHHHHhcCCeeEEEEeeCCCC-CCCcceEEEEeCCHHHHHHHHHHhCCCccCCeE
Q 011693 99 PHGSEVYIGGIPH-----DASEHDLRDFCQSIGEVTEVRIMKGKDS-SENKGFAFVTFRNVELASKAIDKLNNTEFKGKK 172 (479)
Q Consensus 99 ~~~~~l~V~nLp~-----~~t~~~l~~~f~~~G~v~~v~i~~~~~~-g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~ 172 (479)
..+++|+|+||.. +.++++|+++|++||.|.+|+|++++.+ ++++|||||+|.+.++|.+|++.||+..+.||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4578999999963 2478999999999999999999998764 689999999999999999999999999999999
Q ss_pred EEEeeccc
Q 011693 173 IRCSTSQA 180 (479)
Q Consensus 173 i~v~~~~~ 180 (479)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999875
No 333
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.62 E-value=1.1e-15 Score=149.90 Aligned_cols=82 Identities=15% Similarity=0.375 Sum_probs=78.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 179 (479)
..++|||+|||++||+++|+++|++||.|+.|.|+.++.++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q 011693 180 AK 181 (479)
Q Consensus 180 ~~ 181 (479)
..
T Consensus 181 ~~ 182 (437)
T 3pgw_S 181 GR 182 (437)
T ss_pred CC
Confidence 54
No 334
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.62 E-value=7.3e-16 Score=122.62 Aligned_cols=74 Identities=28% Similarity=0.478 Sum_probs=66.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeE-----EE
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKK-----IR 174 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~-----i~ 174 (479)
..++|||+|||+++|+++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||+.||+..|.|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4689999999999999999999999999999999875 89999999999999999999999999998 66
Q ss_pred Eeeccc
Q 011693 175 CSTSQA 180 (479)
Q Consensus 175 v~~~~~ 180 (479)
|..+.+
T Consensus 88 v~~~~~ 93 (115)
T 3beg_B 88 VKVDGP 93 (115)
T ss_dssp EEECC-
T ss_pred eccCCC
Confidence 665554
No 335
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.62 E-value=1.8e-15 Score=133.41 Aligned_cols=77 Identities=19% Similarity=0.250 Sum_probs=72.4
Q ss_pred ccEEEEcCCC-CCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEecc
Q 011693 275 VKAVYVKNLP-RNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (479)
Q Consensus 275 ~~~l~V~nLp-~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (479)
+++|||+||| +.+|+++|+++|++||.|.+|+|++++ +|||||+|.+.++|.+||+.||+..|.|++|+|.+++
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 4799999999 899999999999999999999999874 7999999999999999999999999999999999997
Q ss_pred CCC
Q 011693 354 PQA 356 (479)
Q Consensus 354 ~~~ 356 (479)
...
T Consensus 79 ~~~ 81 (205)
T 3tyt_A 79 QPA 81 (205)
T ss_dssp CSC
T ss_pred CCc
Confidence 543
No 336
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.1e-15 Score=119.85 Aligned_cols=80 Identities=23% Similarity=0.365 Sum_probs=70.6
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCC---CCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEE
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG---QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~---~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 350 (479)
..++|||+|||+++|+++|+++|++||.|. +.++.++.+ +.++|||||+|.+.++|.+||+.|+ .++|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 348999999999999999999999999999 999988877 5789999999999999999999984 4788888887
Q ss_pred eccCCC
Q 011693 351 LAKPQA 356 (479)
Q Consensus 351 ~a~~~~ 356 (479)
.+.+..
T Consensus 84 ~~~~~~ 89 (114)
T 2dnl_A 84 SSPTIK 89 (114)
T ss_dssp CCSSSC
T ss_pred cCCCcC
Confidence 665443
No 337
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.62 E-value=1.7e-15 Score=130.32 Aligned_cols=81 Identities=22% Similarity=0.546 Sum_probs=77.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeec
Q 011693 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 178 (479)
...++|||+|||+++|+++|+++|++||.|..|.+++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|.|.+|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 34689999999999999999999999999999999999989999999999999999999999999999999999999987
Q ss_pred c
Q 011693 179 Q 179 (479)
Q Consensus 179 ~ 179 (479)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 338
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.62 E-value=1.6e-15 Score=114.49 Aligned_cols=75 Identities=35% Similarity=0.569 Sum_probs=63.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCc--cCCeEEEE
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE--FKGKKIRC 175 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~--~~g~~i~v 175 (479)
+...++|||+|||+++|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+ +++.. +.|+.|.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 456799999999999999999999999999999999874 79999999999999984 34444 56999999
Q ss_pred eecccc
Q 011693 176 STSQAK 181 (479)
Q Consensus 176 ~~~~~~ 181 (479)
.++.++
T Consensus 79 ~~a~~k 84 (89)
T 3d2w_A 79 SNAEPK 84 (89)
T ss_dssp EECC--
T ss_pred EEcCCC
Confidence 998764
No 339
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.61 E-value=2.6e-15 Score=113.19 Aligned_cols=71 Identities=20% Similarity=0.437 Sum_probs=66.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhc----C-------CeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCcee
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHH----G-------RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL 342 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~----G-------~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~ 342 (479)
+.++|||+|||+++|+++|+++|++| | .|.++++..+ +|||||+|.+.++|.+|+ .||+..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 45899999999999999999999999 8 8999999876 599999999999999999 8999999
Q ss_pred cCeEEEEEe
Q 011693 343 DGQALECSL 351 (479)
Q Consensus 343 ~g~~l~v~~ 351 (479)
.|++|+|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999974
No 340
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.5e-15 Score=114.91 Aligned_cols=77 Identities=23% Similarity=0.459 Sum_probs=70.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
+...++|||+|| ++|+++|+++|++||.|.+|.|. +++|||||+|.+.++|.+||+.|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345789999996 89999999999999999999984 4689999999999999999999999999999999999
Q ss_pred ccccc
Q 011693 178 SQAKY 182 (479)
Q Consensus 178 ~~~~~ 182 (479)
+.++.
T Consensus 84 a~~~~ 88 (97)
T 1x5p_A 84 ARKQP 88 (97)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 97654
No 341
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.60 E-value=1.9e-15 Score=113.95 Aligned_cols=71 Identities=30% Similarity=0.622 Sum_probs=66.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhc----C-------CeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCcc
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSI----G-------EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF 168 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~----G-------~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~ 168 (479)
..++|||+|||+++|+++|+++|++| | .|.+|++.++ +|||||+|.+.++|.+|+ .|++..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 46899999999999999999999999 8 9999998754 899999999999999999 9999999
Q ss_pred CCeEEEEee
Q 011693 169 KGKKIRCST 177 (479)
Q Consensus 169 ~g~~i~v~~ 177 (479)
.|+.|+|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999974
No 342
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.60 E-value=3.1e-15 Score=133.78 Aligned_cols=84 Identities=14% Similarity=0.436 Sum_probs=79.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeec
Q 011693 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 178 (479)
...++|||+|||+++|+++|+++|+.||.|..|+|+.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccc
Q 011693 179 QAKY 182 (479)
Q Consensus 179 ~~~~ 182 (479)
.+..
T Consensus 203 ~~~~ 206 (216)
T 2qfj_A 203 VTPP 206 (216)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8653
No 343
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.60 E-value=3.4e-15 Score=131.32 Aligned_cols=85 Identities=24% Similarity=0.401 Sum_probs=77.3
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
....++|||+|||+++|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|.+||.. ++..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 34568999999999999999999999999999999999999888899999999999999999985 89999999999999
Q ss_pred ccCCCc
Q 011693 352 AKPQAD 357 (479)
Q Consensus 352 a~~~~~ 357 (479)
+.+...
T Consensus 89 ~~~~~~ 94 (196)
T 1l3k_A 89 AVSRED 94 (196)
T ss_dssp CCC---
T ss_pred ccCccc
Confidence 976643
No 344
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.60 E-value=3.5e-15 Score=131.49 Aligned_cols=84 Identities=21% Similarity=0.525 Sum_probs=80.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
+...++|||+|||+++|+++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35679999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cccc
Q 011693 178 SQAK 181 (479)
Q Consensus 178 ~~~~ 181 (479)
+.++
T Consensus 191 a~~~ 194 (198)
T 2yh0_A 191 ASVG 194 (198)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8765
No 345
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.59 E-value=2.6e-15 Score=120.22 Aligned_cols=78 Identities=21% Similarity=0.336 Sum_probs=70.3
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEec
Q 011693 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 352 (479)
...++|||+|| ++|+++|+++|++||.|.+|.|.. ++|||||+|.+.++|.+||..||+..|.|++|+|.++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~------~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP------PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET------TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 34589999996 799999999999999999999963 4799999999999999999999999999999999999
Q ss_pred cCCCcc
Q 011693 353 KPQADQ 358 (479)
Q Consensus 353 ~~~~~~ 358 (479)
.++...
T Consensus 109 ~~~~~~ 114 (121)
T 2bz2_A 109 RKQPML 114 (121)
T ss_dssp CSSCC-
T ss_pred CCCCCC
Confidence 877543
No 346
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.59 E-value=1.5e-15 Score=130.03 Aligned_cols=80 Identities=23% Similarity=0.570 Sum_probs=76.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 180 (479)
.++|||+|||+++|+++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|.+|++ +++..|.|+.|.|.++.+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 5799999999999999999999999999999999999899999999999999999999996 899999999999999876
Q ss_pred c
Q 011693 181 K 181 (479)
Q Consensus 181 ~ 181 (479)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 347
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.59 E-value=6.1e-15 Score=117.35 Aligned_cols=75 Identities=23% Similarity=0.295 Sum_probs=67.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcce-EEEEeCCHHHHHHHHHHhCCCccCC--eEEEEeec
Q 011693 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGF-AFVTFRNVELASKAIDKLNNTEFKG--KKIRCSTS 178 (479)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~-afV~F~~~~~A~~a~~~~~~~~~~g--~~i~v~~~ 178 (479)
..|||+|||+.+|+++|+++|++||.|.+|+|+.. .|| |||+|.+.++|.+|++.|+|..|.| +.|+|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 34689999999999999999999999999999752 286 9999999999999999999999987 69999999
Q ss_pred cccc
Q 011693 179 QAKY 182 (479)
Q Consensus 179 ~~~~ 182 (479)
.+..
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 8765
No 348
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.58 E-value=6.4e-15 Score=114.45 Aligned_cols=82 Identities=13% Similarity=0.267 Sum_probs=72.0
Q ss_pred cccEEEEcCC--CCCCC--------HHHHHHHHhhcCCeEEEEecCCCCC--CCcccEEEEEeCChHHHHHHHHHhCCce
Q 011693 274 QVKAVYVKNL--PRNVT--------QDQLKKLFEHHGRITKVVVPPAKPG--QEKNRIGFVHFAERSSAMKALKNTEKYE 341 (479)
Q Consensus 274 ~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~v~~v~i~~~~~~--~~~~G~afV~F~~~~~A~~A~~~l~~~~ 341 (479)
++++|+|.|+ |..+. .++|++.|++||.|.+|+|++++.+ ..++|+|||+|.+.++|.+|+..|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4589999999 33433 3789999999999999999998865 3568999999999999999999999999
Q ss_pred ecCeEEEEEeccCC
Q 011693 342 LDGQALECSLAKPQ 355 (479)
Q Consensus 342 ~~g~~l~v~~a~~~ 355 (479)
|+||+|+|.++.+.
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999998654
No 349
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.58 E-value=6.2e-14 Score=130.74 Aligned_cols=81 Identities=26% Similarity=0.475 Sum_probs=74.0
Q ss_pred ccccEEEEcCCCCCCCHHHHH----HHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEE
Q 011693 273 SQVKAVYVKNLPRNVTQDQLK----KLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~ 348 (479)
.++++|||+|||+++|+++|+ ++|++||.|.+|+|++ ++.++|||||+|.+.++|.+||..||+..|.|+.|+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 445899999999999999977 8999999999999987 445689999999999999999999999999999999
Q ss_pred EEeccCCC
Q 011693 349 CSLAKPQA 356 (479)
Q Consensus 349 v~~a~~~~ 356 (479)
|.++....
T Consensus 84 v~~a~~~~ 91 (282)
T 3pgw_A 84 IQYAKTDS 91 (282)
T ss_pred EEEeccCc
Confidence 99997655
No 350
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.4e-14 Score=113.23 Aligned_cols=83 Identities=14% Similarity=0.245 Sum_probs=70.7
Q ss_pred CccccEEEEcCCCCCCC-----------HHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCc
Q 011693 272 ASQVKAVYVKNLPRNVT-----------QDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340 (479)
Q Consensus 272 ~~~~~~l~V~nLp~~~t-----------~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~ 340 (479)
..++++|+|.||....+ +++|+++|++||.|.+|.| .++. ++|||||+|.+.++|.+|+..||+.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~---~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH---PDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC---TTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC---CCEEEEEEECCHHHHHHHHHHcCCC
Confidence 34568999999954432 5899999999999999977 4432 5899999999999999999999999
Q ss_pred eecCeEEEEEeccCCCcc
Q 011693 341 ELDGQALECSLAKPQADQ 358 (479)
Q Consensus 341 ~~~g~~l~v~~a~~~~~~ 358 (479)
.|.|++|+|.++.+....
T Consensus 88 ~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 88 WFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp EETTEECEEEECCSCCCS
T ss_pred EECCcEEEEEEeCCCCCc
Confidence 999999999999886543
No 351
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.9e-15 Score=114.18 Aligned_cols=77 Identities=31% Similarity=0.493 Sum_probs=66.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeec
Q 011693 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 178 (479)
...++|||+|||+++|+++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|++|+. ....+.++.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 35799999999999999999999999999999999865 68999999999999986542 234568999999988
Q ss_pred cccc
Q 011693 179 QAKY 182 (479)
Q Consensus 179 ~~~~ 182 (479)
.++.
T Consensus 76 ~~~~ 79 (88)
T 1wf0_A 76 EPKH 79 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 352
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.56 E-value=8.4e-15 Score=130.07 Aligned_cols=81 Identities=21% Similarity=0.339 Sum_probs=71.3
Q ss_pred CCccccEEEEcCCCCCC---------CHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCce
Q 011693 271 GASQVKAVYVKNLPRNV---------TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE 341 (479)
Q Consensus 271 ~~~~~~~l~V~nLp~~~---------t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~ 341 (479)
.....++|||+||+..+ ++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|+.|+..|++..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 34556899999999998 79999999999999999999964 6999999999999999999999999
Q ss_pred e------------cCeEEEEEeccCCCc
Q 011693 342 L------------DGQALECSLAKPQAD 357 (479)
Q Consensus 342 ~------------~g~~l~v~~a~~~~~ 357 (479)
| .|+.|.|+||+....
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EeccccccccccCCCCEEEEEEccCCCC
Confidence 9 899999999987654
No 353
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.56 E-value=1.1e-14 Score=116.58 Aligned_cols=77 Identities=23% Similarity=0.459 Sum_probs=70.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEee
Q 011693 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~ 177 (479)
+...++|||+|| ++|+++|+++|++||.|.+|.|. +++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456899999995 79999999999999999999985 4689999999999999999999999999999999999
Q ss_pred ccccc
Q 011693 178 SQAKY 182 (479)
Q Consensus 178 ~~~~~ 182 (479)
+.+..
T Consensus 108 a~~~~ 112 (121)
T 2bz2_A 108 ARKQP 112 (121)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 88653
No 354
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.55 E-value=1.3e-14 Score=126.37 Aligned_cols=78 Identities=24% Similarity=0.450 Sum_probs=72.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 180 (479)
.++|||+|||+++|+++|+++|++||.|.+|+|+++. +++++|||||+|.+.++|.+|++.+ +..|.|+.|.|.+...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 4899999999999999999999999999999999986 4999999999999999999999654 5699999999998765
No 355
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.54 E-value=2e-14 Score=123.90 Aligned_cols=79 Identities=27% Similarity=0.508 Sum_probs=73.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccC---CeEEEEe
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK---GKKIRCS 176 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~---g~~i~v~ 176 (479)
..++|||+|||+++|+++|+++|++||.|.+|++++++ ++.++|||||+|.+.++|.+|++.||+..+. ++.|.|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 46899999999999999999999999999999999996 5999999999999999999999999998876 4999998
Q ss_pred ecc
Q 011693 177 TSQ 179 (479)
Q Consensus 177 ~~~ 179 (479)
++.
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 873
No 356
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4.5e-14 Score=111.64 Aligned_cols=85 Identities=25% Similarity=0.358 Sum_probs=72.7
Q ss_pred cCCCCCceEEEcCCCCCC-----------CHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhC
Q 011693 96 ALPPHGSEVYIGGIPHDA-----------SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN 164 (479)
Q Consensus 96 ~~~~~~~~l~V~nLp~~~-----------t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~ 164 (479)
..+..+++|+|+||.... ++++|+++|++||.|.+|.| .++ .++|||||+|.+.++|.+|++.||
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 346678999999994433 26899999999999999966 553 389999999999999999999999
Q ss_pred CCccCCeEEEEeeccccccc
Q 011693 165 NTEFKGKKIRCSTSQAKYRL 184 (479)
Q Consensus 165 ~~~~~g~~i~v~~~~~~~~l 184 (479)
+..|.|+.|+|.++.+....
T Consensus 86 g~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp TCEETTEECEEEECCSCCCS
T ss_pred CCEECCcEEEEEEeCCCCCc
Confidence 99999999999998876543
No 357
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.51 E-value=3.6e-14 Score=127.85 Aligned_cols=79 Identities=25% Similarity=0.324 Sum_probs=74.3
Q ss_pred ccccEEEEcCCCC-CCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEe
Q 011693 273 SQVKAVYVKNLPR-NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (479)
Q Consensus 273 ~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 351 (479)
.++++|||+|||+ ++|+++|+++|++||.|.+|+|+.++ +|||||+|.+.++|.+|+..||+..|.|++|.|.+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4458999999999 99999999999999999999999987 79999999999999999999999999999999999
Q ss_pred ccCCC
Q 011693 352 AKPQA 356 (479)
Q Consensus 352 a~~~~ 356 (479)
+.+..
T Consensus 107 a~~~~ 111 (229)
T 2adc_A 107 SKHQN 111 (229)
T ss_dssp CSCCC
T ss_pred ecCcc
Confidence 98664
No 358
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.51 E-value=3.1e-14 Score=112.65 Aligned_cols=82 Identities=15% Similarity=0.244 Sum_probs=71.4
Q ss_pred cccEEEEcCCCC--CC---CHHHHHHHHhhcCCeEEEEecCCCC----CCCcccEEEEEeCChHHHHHHHHHhCCceecC
Q 011693 274 QVKAVYVKNLPR--NV---TQDQLKKLFEHHGRITKVVVPPAKP----GQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344 (479)
Q Consensus 274 ~~~~l~V~nLp~--~~---t~~~l~~~F~~~G~v~~v~i~~~~~----~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g 344 (479)
++++|+|.|+-. .+ .+++|++.|++||.|.+|+|++++. +..++||+||+|.+.++|.+|+..|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 458999999942 22 3689999999999999999999875 34568999999999999999999999999999
Q ss_pred eEEEEEeccCC
Q 011693 345 QALECSLAKPQ 355 (479)
Q Consensus 345 ~~l~v~~a~~~ 355 (479)
|.|+|.++...
T Consensus 99 R~i~v~~~~~~ 109 (118)
T 3ue2_A 99 RKVVAEVYDQE 109 (118)
T ss_dssp EECEEEEECHH
T ss_pred cEEEEEEcChH
Confidence 99999998653
No 359
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.51 E-value=5.7e-14 Score=109.08 Aligned_cols=81 Identities=22% Similarity=0.332 Sum_probs=71.8
Q ss_pred CCceEEEcCC--CCCCC--------HHHHHHHHHhcCCeeEEEEeeCCCC--CCCcceEEEEeCCHHHHHHHHHHhCCCc
Q 011693 100 HGSEVYIGGI--PHDAS--------EHDLRDFCQSIGEVTEVRIMKGKDS--SENKGFAFVTFRNVELASKAIDKLNNTE 167 (479)
Q Consensus 100 ~~~~l~V~nL--p~~~t--------~~~l~~~f~~~G~v~~v~i~~~~~~--g~~~g~afV~F~~~~~A~~a~~~~~~~~ 167 (479)
+++.|.|+|+ |.++. +++|++.|++||.|.+|+|++++.+ ++++|+|||+|.+.++|.+|++.||+..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5789999998 44443 3689999999999999999998765 4789999999999999999999999999
Q ss_pred cCCeEEEEeeccc
Q 011693 168 FKGKKIRCSTSQA 180 (479)
Q Consensus 168 ~~g~~i~v~~~~~ 180 (479)
+.||.|+|.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999998764
No 360
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.50 E-value=3.7e-14 Score=125.92 Aligned_cols=79 Identities=20% Similarity=0.372 Sum_probs=71.6
Q ss_pred CCCCceEEEcCCCCCC---------CHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCcc
Q 011693 98 PPHGSEVYIGGIPHDA---------SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF 168 (479)
Q Consensus 98 ~~~~~~l~V~nLp~~~---------t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~ 168 (479)
....++|||+|||.++ |+++|+++|++||.|.+|+|+. ++|||||+|.+.++|+.|++.|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4568999999999998 7999999999999999999986 489999999999999999999999999
Q ss_pred ------------CCeEEEEeeccccc
Q 011693 169 ------------KGKKIRCSTSQAKY 182 (479)
Q Consensus 169 ------------~g~~i~v~~~~~~~ 182 (479)
.|+.|.|.++.+..
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999998653
No 361
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.50 E-value=9.3e-14 Score=127.75 Aligned_cols=80 Identities=25% Similarity=0.403 Sum_probs=73.6
Q ss_pred CCCccccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEE
Q 011693 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (479)
Q Consensus 270 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 349 (479)
......++|||+|||+++|+++|+++|++||.|.+|.|.++ +|||||+|.+.++|.+|+..||+..|.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 90 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEe
Confidence 34455689999999999999999999999999999999765 599999999999999999999999999999999
Q ss_pred EeccCC
Q 011693 350 SLAKPQ 355 (479)
Q Consensus 350 ~~a~~~ 355 (479)
.++.+.
T Consensus 91 ~~a~~~ 96 (261)
T 3sde_A 91 RFATHG 96 (261)
T ss_dssp EECCCS
T ss_pred eecccC
Confidence 999763
No 362
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.50 E-value=3.6e-14 Score=122.32 Aligned_cols=77 Identities=17% Similarity=0.360 Sum_probs=71.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 179 (479)
..++|||+|||+++|+++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|++.|++..|.|+.|+|.++.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 46899999999999999999999999988766 4578999999999999999999999999999999999999987
Q ss_pred cc
Q 011693 180 AK 181 (479)
Q Consensus 180 ~~ 181 (479)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 363
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.49 E-value=1.9e-14 Score=111.65 Aligned_cols=72 Identities=18% Similarity=0.266 Sum_probs=63.7
Q ss_pred EcCCCCCCCHHHHHHHH------------hhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEE
Q 011693 280 VKNLPRNVTQDQLKKLF------------EHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQAL 347 (479)
Q Consensus 280 V~nLp~~~t~~~l~~~F------------~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l 347 (479)
+.+||+.+++++|+++| ++||.|.+|+|+++.. +.++|||||+|.+.++|.+|+..|||..|+||+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777777887777666 9999999999999876 4669999999999999999999999999999999
Q ss_pred EEEec
Q 011693 348 ECSLA 352 (479)
Q Consensus 348 ~v~~a 352 (479)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 364
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.48 E-value=5.2e-14 Score=123.93 Aligned_cols=76 Identities=26% Similarity=0.346 Sum_probs=72.7
Q ss_pred cEEEEcCCCC-CCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccC
Q 011693 276 KAVYVKNLPR-NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (479)
Q Consensus 276 ~~l~V~nLp~-~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (479)
++|||+|||+ ++|+++|+++|++||.|.+|+|+.++ +|||||+|.+.++|.+|+..||+..|.|++|.|.++.+
T Consensus 4 ~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 4 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 7999999999 99999999999999999999999987 78999999999999999999999999999999999987
Q ss_pred CC
Q 011693 355 QA 356 (479)
Q Consensus 355 ~~ 356 (479)
..
T Consensus 79 ~~ 80 (198)
T 1qm9_A 79 QN 80 (198)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 365
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.46 E-value=1.3e-13 Score=109.02 Aligned_cols=81 Identities=25% Similarity=0.342 Sum_probs=71.8
Q ss_pred CCceEEEcCCC--CC---CCHHHHHHHHHhcCCeeEEEEeeCCC----CCCCcceEEEEeCCHHHHHHHHHHhCCCccCC
Q 011693 100 HGSEVYIGGIP--HD---ASEHDLRDFCQSIGEVTEVRIMKGKD----SSENKGFAFVTFRNVELASKAIDKLNNTEFKG 170 (479)
Q Consensus 100 ~~~~l~V~nLp--~~---~t~~~l~~~f~~~G~v~~v~i~~~~~----~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g 170 (479)
++++|+|+|+- .+ -.+++|++.|++||.|.+|+|++++. +++++|++||+|.+.++|.+|++.||+..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 58999999993 22 24689999999999999999999865 46788999999999999999999999999999
Q ss_pred eEEEEeeccc
Q 011693 171 KKIRCSTSQA 180 (479)
Q Consensus 171 ~~i~v~~~~~ 180 (479)
|.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998764
No 366
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=6.3e-13 Score=101.64 Aligned_cols=67 Identities=24% Similarity=0.315 Sum_probs=58.9
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEeccCCCcc
Q 011693 285 RNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQ 358 (479)
Q Consensus 285 ~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 358 (479)
..+|+++|+++|++||.|.+|+|+. .++|||||+|.+.++|..||..+++ +.+++|+|.|++++...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQD 93 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCC
Confidence 4689999999999999999999983 4589999999999999999998554 68999999999877543
No 367
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.45 E-value=4.6e-14 Score=109.44 Aligned_cols=72 Identities=29% Similarity=0.442 Sum_probs=62.9
Q ss_pred EcCCCCCCCHHHHHHHH------------HhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEE
Q 011693 106 IGGIPHDASEHDLRDFC------------QSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (479)
Q Consensus 106 V~nLp~~~t~~~l~~~f------------~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i 173 (479)
+.|||+.+|+++|+++| ++||.|.+|+|+++.. ++++|||||+|.+.++|.+|++.||+..+.||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45666677777666655 9999999999998864 7999999999999999999999999999999999
Q ss_pred EEeec
Q 011693 174 RCSTS 178 (479)
Q Consensus 174 ~v~~~ 178 (479)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99876
No 368
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.42 E-value=8.8e-13 Score=103.47 Aligned_cols=80 Identities=11% Similarity=0.162 Sum_probs=68.5
Q ss_pred ccccEEEEcCCCCCC----------CHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCcee
Q 011693 273 SQVKAVYVKNLPRNV----------TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL 342 (479)
Q Consensus 273 ~~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~ 342 (479)
.++++|.|.|+-... .+++|++.|++||.|.+|.|.++. ++||+||+|.+.++|.+|+..|||..|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 345899999994322 236889999999999999997764 479999999999999999999999999
Q ss_pred cCeEEEEEeccCCC
Q 011693 343 DGQALECSLAKPQA 356 (479)
Q Consensus 343 ~g~~l~v~~a~~~~ 356 (479)
+||.|+|.++....
T Consensus 81 ~GR~i~v~~~~~~~ 94 (114)
T 3s6e_A 81 AGKMITAAYVPLPT 94 (114)
T ss_dssp TTEECEEEEECHHH
T ss_pred CCEEEEEEEEcHHH
Confidence 99999999996543
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.34 E-value=3e-12 Score=119.99 Aligned_cols=76 Identities=21% Similarity=0.388 Sum_probs=66.6
Q ss_pred CccccEEEEcC--CCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceec---Ce-
Q 011693 272 ASQVKAVYVKN--LPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD---GQ- 345 (479)
Q Consensus 272 ~~~~~~l~V~n--Lp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~---g~- 345 (479)
..++++|||+| |++.+|+++|+++|++||.|.+|.+.. +||||||+|.+.++|++|++.|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 34568999999 578999999999999999999998875 2699999999999999999999999883 44
Q ss_pred -EEEEEecc
Q 011693 346 -ALECSLAK 353 (479)
Q Consensus 346 -~l~v~~a~ 353 (479)
.|.|.++.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 67888885
No 370
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1e-11 Score=94.89 Aligned_cols=75 Identities=20% Similarity=0.175 Sum_probs=63.5
Q ss_pred CceEEEcCCC-------CCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEE
Q 011693 101 GSEVYIGGIP-------HDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (479)
Q Consensus 101 ~~~l~V~nLp-------~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i 173 (479)
..+|.|.-.+ .++|+++|+++|++||.|.+|.|+ ++++|||||+|.+.++|.+|++.+ ..+.++.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~--~~~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNE--VGLVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTC--CBCSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhc--CCCCCCeE
Confidence 4577777654 458999999999999999999998 368999999999999999999764 44689999
Q ss_pred EEeeccccc
Q 011693 174 RCSTSQAKY 182 (479)
Q Consensus 174 ~v~~~~~~~ 182 (479)
+|.++.+..
T Consensus 83 ~V~~a~~~~ 91 (100)
T 2d9o_A 83 KISWLEGQP 91 (100)
T ss_dssp EEECSSCCC
T ss_pred EEEEccCCC
Confidence 999987653
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.29 E-value=1.1e-11 Score=97.20 Aligned_cols=79 Identities=20% Similarity=0.339 Sum_probs=67.4
Q ss_pred CCCCceEEEcCC--CCCC--------CHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCc
Q 011693 98 PPHGSEVYIGGI--PHDA--------SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE 167 (479)
Q Consensus 98 ~~~~~~l~V~nL--p~~~--------t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~ 167 (479)
+.+++.|.|.|+ |.+. .+++|++.|++||.|.+|.|.++. ++||+||+|.+.++|.+|++.|||..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 456788999998 3321 246789999999999999997653 59999999999999999999999999
Q ss_pred cCCeEEEEeeccc
Q 011693 168 FKGKKIRCSTSQA 180 (479)
Q Consensus 168 ~~g~~i~v~~~~~ 180 (479)
+.||.|.|.++..
T Consensus 80 f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 80 FAGKMITAAYVPL 92 (114)
T ss_dssp ETTEECEEEEECH
T ss_pred ECCEEEEEEEEcH
Confidence 9999999998753
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.27 E-value=7.3e-12 Score=117.40 Aligned_cols=77 Identities=18% Similarity=0.288 Sum_probs=65.7
Q ss_pred CCCCCceEEEcC--CCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccC---Ce
Q 011693 97 LPPHGSEVYIGG--IPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK---GK 171 (479)
Q Consensus 97 ~~~~~~~l~V~n--Lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~---g~ 171 (479)
...++++|||+| |++.+|+++|+++|++||.|.+|.+.. +||||||+|.+.++|++|++.||+..+. |+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 355688999999 588999999999999999999987753 4799999999999999999999999873 55
Q ss_pred --EEEEeecc
Q 011693 172 --KIRCSTSQ 179 (479)
Q Consensus 172 --~i~v~~~~ 179 (479)
.|.|.++.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 46666654
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=3.9e-11 Score=87.52 Aligned_cols=73 Identities=26% Similarity=0.313 Sum_probs=63.3
Q ss_pred cccEEEEcCCCC----CCCH----HHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCe
Q 011693 274 QVKAVYVKNLPR----NVTQ----DQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQ 345 (479)
Q Consensus 274 ~~~~l~V~nLp~----~~t~----~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~ 345 (479)
+..+|+|.-++. ++-+ .+|.+.|.+||.|..++|+.++ +||+|.+.++|.+||. ||+..++||
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 346888888772 3333 6789999999999999999874 8999999999999998 999999999
Q ss_pred EEEEEeccCC
Q 011693 346 ALECSLAKPQ 355 (479)
Q Consensus 346 ~l~v~~a~~~ 355 (479)
.|+|+++++.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999999865
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=8.8e-11 Score=91.90 Aligned_cols=74 Identities=16% Similarity=0.256 Sum_probs=67.4
Q ss_pred cccEEEEcCCCCC-CCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCC-hHHHHHHHHHhC--CceecCeEEEE
Q 011693 274 QVKAVYVKNLPRN-VTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE-RSSAMKALKNTE--KYELDGQALEC 349 (479)
Q Consensus 274 ~~~~l~V~nLp~~-~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~-~~~A~~A~~~l~--~~~~~g~~l~v 349 (479)
...+|+|+||++. ++.++|+++|++||.|.+|.|.++. -.|||+|.+ ..+|..|+..|| +..|.+..+++
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ 90 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTW 90 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEE
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEE
Confidence 3489999999999 9999999999999999999999986 369999999 899999999995 78899999998
Q ss_pred Eecc
Q 011693 350 SLAK 353 (479)
Q Consensus 350 ~~a~ 353 (479)
.+..
T Consensus 91 evL~ 94 (121)
T 1owx_A 91 EVLE 94 (121)
T ss_dssp EECC
T ss_pred EECC
Confidence 8765
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=6.9e-11 Score=92.50 Aligned_cols=75 Identities=17% Similarity=0.287 Sum_probs=66.6
Q ss_pred CCCceEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCC-HHHHHHHHHHhC--CCccCCeEEE
Q 011693 99 PHGSEVYIGGIPHD-ASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRN-VELASKAIDKLN--NTEFKGKKIR 174 (479)
Q Consensus 99 ~~~~~l~V~nLp~~-~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~-~~~A~~a~~~~~--~~~~~g~~i~ 174 (479)
+.++.|+|+||+++ ++.++|+++|++||.|..|.+.++.. +|||.|.+ ..+|.+|++.++ +..|.+..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 45799999999999 99999999999999999999998754 59999999 899999999884 7788998888
Q ss_pred Eeecc
Q 011693 175 CSTSQ 179 (479)
Q Consensus 175 v~~~~ 179 (479)
+....
T Consensus 90 ~evL~ 94 (121)
T 1owx_A 90 WEVLE 94 (121)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 86543
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=1.3e-10 Score=84.79 Aligned_cols=75 Identities=23% Similarity=0.305 Sum_probs=63.8
Q ss_pred CCCCceEEEcCCCC----CCCH----HHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccC
Q 011693 98 PPHGSEVYIGGIPH----DASE----HDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK 169 (479)
Q Consensus 98 ~~~~~~l~V~nLp~----~~t~----~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~ 169 (479)
-|+..||+|.-+|. ..-. .+|.+.|.+||.|..++++.++ +||+|.+.++|.+|++ |++..+.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 35568888888772 2333 6689999999999999999874 9999999999999996 9999999
Q ss_pred CeEEEEeecccc
Q 011693 170 GKKIRCSTSQAK 181 (479)
Q Consensus 170 g~~i~v~~~~~~ 181 (479)
||.|+|+.+.+.
T Consensus 75 Gr~LkV~lkt~d 86 (91)
T 2dnr_A 75 NRTITIALKSPS 86 (91)
T ss_dssp TEEEEEEECCCS
T ss_pred CeEEEEEeCCCC
Confidence 999999988754
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=1.9e-10 Score=84.25 Aligned_cols=73 Identities=21% Similarity=0.239 Sum_probs=63.0
Q ss_pred ccccEEEEcCCCCC-----CCH----HHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceec
Q 011693 273 SQVKAVYVKNLPRN-----VTQ----DQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD 343 (479)
Q Consensus 273 ~~~~~l~V~nLp~~-----~t~----~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~ 343 (479)
++..+|+|.-++.+ +.+ .+|.+.|.+||.|..++|..++ +||+|.+.++|.+||. ||+..|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 34579999998743 322 5689999999999999999885 9999999999999999 9999999
Q ss_pred CeEEEEEeccC
Q 011693 344 GQALECSLAKP 354 (479)
Q Consensus 344 g~~l~v~~a~~ 354 (479)
||.|+|++..+
T Consensus 84 Gr~L~V~~k~~ 94 (95)
T 1ufw_A 84 GRAVKISGPSS 94 (95)
T ss_dssp TEEEEEECCCC
T ss_pred CeEEEEeccCC
Confidence 99999998654
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=7.2e-10 Score=81.18 Aligned_cols=75 Identities=23% Similarity=0.313 Sum_probs=63.8
Q ss_pred cCCCCCceEEEcCCCCC-----CCH----HHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCC
Q 011693 96 ALPPHGSEVYIGGIPHD-----ASE----HDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNT 166 (479)
Q Consensus 96 ~~~~~~~~l~V~nLp~~-----~t~----~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~ 166 (479)
..-|+..||+|.-++.+ .-. .+|.+.|.+||.|..++|+.++ +||+|.+.++|.+||+ |++.
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~ 80 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGM 80 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGS
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCe
Confidence 34566789999988743 222 5689999999999999999884 9999999999999997 9999
Q ss_pred ccCCeEEEEeecc
Q 011693 167 EFKGKKIRCSTSQ 179 (479)
Q Consensus 167 ~~~g~~i~v~~~~ 179 (479)
.+.||.|+|+...
T Consensus 81 ~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 81 KVKGRAVKISGPS 93 (95)
T ss_dssp EETTEEEEEECCC
T ss_pred eeCCeEEEEeccC
Confidence 9999999998654
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.89 E-value=1e-08 Score=91.55 Aligned_cols=80 Identities=15% Similarity=0.221 Sum_probs=66.5
Q ss_pred cEEEEcCCC-----CCCCHHHHHHHHhhcCCeEEEEecCCC----CCCCcccEEEEEeCChHHHHHHHHHhCCceecCeE
Q 011693 276 KAVYVKNLP-----RNVTQDQLKKLFEHHGRITKVVVPPAK----PGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQA 346 (479)
Q Consensus 276 ~~l~V~nLp-----~~~t~~~l~~~F~~~G~v~~v~i~~~~----~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~ 346 (479)
..+.+.|+- ..-.+++|++.|++||.|.+|.|+++. .++.++|++||+|.+.++|.+|+..|||+.|.||.
T Consensus 125 ~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~ 204 (222)
T 3dxb_A 125 TVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRK 204 (222)
T ss_dssp SEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred ccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeE
Confidence 455555552 234568999999999999999998554 34477999999999999999999999999999999
Q ss_pred EEEEeccCC
Q 011693 347 LECSLAKPQ 355 (479)
Q Consensus 347 l~v~~a~~~ 355 (479)
|.|.++...
T Consensus 205 i~~~~~~~~ 213 (222)
T 3dxb_A 205 VVAEVYDQE 213 (222)
T ss_dssp CEEEECCHH
T ss_pred EEEEEcCHH
Confidence 999998643
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.78 E-value=1.2e-08 Score=90.96 Aligned_cols=81 Identities=25% Similarity=0.348 Sum_probs=67.7
Q ss_pred CCceEEEcCCCC-----CCCHHHHHHHHHhcCCeeEEEEeeCC----CCCCCcceEEEEeCCHHHHHHHHHHhCCCccCC
Q 011693 100 HGSEVYIGGIPH-----DASEHDLRDFCQSIGEVTEVRIMKGK----DSSENKGFAFVTFRNVELASKAIDKLNNTEFKG 170 (479)
Q Consensus 100 ~~~~l~V~nLp~-----~~t~~~l~~~f~~~G~v~~v~i~~~~----~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g 170 (479)
..+.+.+.|+-. +-.+++|++.|++||.|.+|.|+++. .+++++|++||+|.+.++|.+|++.|+|..+.|
T Consensus 123 ~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g 202 (222)
T 3dxb_A 123 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 202 (222)
T ss_dssp BCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred ccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC
Confidence 445566666522 23567899999999999999999554 455999999999999999999999999999999
Q ss_pred eEEEEeeccc
Q 011693 171 KKIRCSTSQA 180 (479)
Q Consensus 171 ~~i~v~~~~~ 180 (479)
|.|.|.++..
T Consensus 203 r~i~~~~~~~ 212 (222)
T 3dxb_A 203 RKVVAEVYDQ 212 (222)
T ss_dssp SBCEEEECCH
T ss_pred eEEEEEEcCH
Confidence 9999998763
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.68 E-value=1e-07 Score=71.07 Aligned_cols=71 Identities=13% Similarity=0.200 Sum_probs=66.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhc-----CCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEE
Q 011693 276 KAVYVKNLPRNVTQDQLKKLFEHH-----GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l~~~F~~~-----G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 350 (479)
++|-|-|||-.+++..|+.+++++ |.|+.|.+..|. +=|+|+|.+...|-+|...|+|..|.||+|+|.
T Consensus 22 rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 22 TLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 789999999999999999999999 999999999996 779999999999999999999999999999986
Q ss_pred ec
Q 011693 351 LA 352 (479)
Q Consensus 351 ~a 352 (479)
-.
T Consensus 96 Tv 97 (117)
T 2l9w_A 96 TI 97 (117)
T ss_dssp CH
T ss_pred CH
Confidence 43
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.51 E-value=1.1e-06 Score=65.54 Aligned_cols=71 Identities=21% Similarity=0.328 Sum_probs=66.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhc-----CCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEE
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSI-----GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~-----G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~ 174 (479)
..++|-|-|||..++...|+.|++.+ |.|+.|.+..|. +=|+|+|.+...|-+|.-.|+|..|.||+|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 47899999999999999999999999 999999999984 4599999999999999989999999999999
Q ss_pred Ee
Q 011693 175 CS 176 (479)
Q Consensus 175 v~ 176 (479)
|.
T Consensus 94 ~g 95 (117)
T 2l9w_A 94 SG 95 (117)
T ss_dssp EE
T ss_pred ec
Confidence 95
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=4.5e-06 Score=61.89 Aligned_cols=88 Identities=18% Similarity=0.302 Sum_probs=73.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhc-----CCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEE
Q 011693 99 PHGSEVYIGGIPHDASEHDLRDFCQSI-----GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-----G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i 173 (479)
.-.++|.|.|||.++.++.|.-+|+.- |+|.+|.... +-|+|+|.+.+.|+++| +...+.|.+..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL-~k~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVL-AQADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHH-TCSCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHh-cCCcceecCeEE
Confidence 346899999999999999999999872 5899888754 35999999999999999 445888999999
Q ss_pred EEeeccc--ccccccCCCCCCCCH
Q 011693 174 RCSTSQA--KYRLFIGNIPRNWGS 195 (479)
Q Consensus 174 ~v~~~~~--~~~l~v~~l~~~~~~ 195 (479)
.|....+ ..+|++.+|++.++.
T Consensus 77 sV~P~~~~~~~r~ll~gl~~~t~~ 100 (104)
T 2dhx_A 77 SLRPAPPRAPARLLLQGLPPGTSG 100 (104)
T ss_dssp EEEECCCCCCCCCCCCSCCCCCCC
T ss_pred EEEcCCCCCcceEeeecCCCCCCC
Confidence 9987654 468999999988753
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.05 E-value=3.2e-05 Score=57.68 Aligned_cols=75 Identities=16% Similarity=0.136 Sum_probs=64.9
Q ss_pred cEEEEcCCCCCC-C----HHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEE
Q 011693 276 KAVYVKNLPRNV-T----QDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (479)
Q Consensus 276 ~~l~V~nLp~~~-t----~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 350 (479)
++|+|.||+..+ . .+.++++|..|+.+.....++.- .-..|.|.+.++|.+|-..||+..|.|+.|+|-
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 789999998766 2 26789999999998888777764 357899999999999999999999999999999
Q ss_pred eccCCC
Q 011693 351 LAKPQA 356 (479)
Q Consensus 351 ~a~~~~ 356 (479)
++.+..
T Consensus 80 Fgq~~~ 85 (104)
T 1wey_A 80 FAQTLH 85 (104)
T ss_dssp CCCCSS
T ss_pred ecCCCC
Confidence 998554
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.82 E-value=0.00019 Score=53.20 Aligned_cols=76 Identities=29% Similarity=0.352 Sum_probs=63.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhc-----CCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEE
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHH-----GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~-----G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 349 (479)
.++|.|.|||..++++.|.-+|+.- |.|.+|.... +-|+|+|.+...|++.|+. ..+.|.+.+|.|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV 78 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLSL 78 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEEE
Confidence 3799999999999999999999882 6799998865 3689999999999999884 467899999999
Q ss_pred EeccCCCccC
Q 011693 350 SLAKPQADQK 359 (479)
Q Consensus 350 ~~a~~~~~~~ 359 (479)
....+....+
T Consensus 79 ~P~~~~~~~r 88 (104)
T 2dhx_A 79 RPAPPRAPAR 88 (104)
T ss_dssp EECCCCCCCC
T ss_pred EcCCCCCcce
Confidence 8766665433
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.67 E-value=0.00013 Score=54.42 Aligned_cols=74 Identities=22% Similarity=0.215 Sum_probs=63.8
Q ss_pred CceEEEcCCCCCC-C----HHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Q 011693 101 GSEVYIGGIPHDA-S----EHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (479)
Q Consensus 101 ~~~l~V~nLp~~~-t----~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v 175 (479)
.++|+|.||+.++ + .+.|+++|..|+++......+.- .-..|.|.++++|.+|-..||+..+.|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 5789999998875 2 25689999999999988887753 24899999999999999999999999999999
Q ss_pred eeccc
Q 011693 176 STSQA 180 (479)
Q Consensus 176 ~~~~~ 180 (479)
.++++
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 98873
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.65 E-value=0.00017 Score=52.88 Aligned_cols=69 Identities=20% Similarity=0.245 Sum_probs=57.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCC--CcceEEEEeCCHHHHHHHHHHhCCCccCC
Q 011693 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE--NKGFAFVTFRNVELASKAIDKLNNTEFKG 170 (479)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~--~~g~afV~F~~~~~A~~a~~~~~~~~~~g 170 (479)
++|-||+||+.+|++++.+.+..+..+.....+..+.+.. .-.-|||.|.+.+++....+.+++..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 5799999999999999999999998888777776554322 23459999999999999999999988753
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.57 E-value=0.00059 Score=50.08 Aligned_cols=78 Identities=12% Similarity=0.148 Sum_probs=62.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCC--cccEEEEEeCChHHHHHHHHHhCCceecC-----eEEE
Q 011693 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE--KNRIGFVHFAERSSAMKALKNTEKYELDG-----QALE 348 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~--~~G~afV~F~~~~~A~~A~~~l~~~~~~g-----~~l~ 348 (479)
++|.|++||+++|++++.+.+.....+.....+..+.... .-.-|+|.|.+.+++..-.+.++|+.|-+ .+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 5899999999999999999999998888877766553221 23469999999999999999999988753 2345
Q ss_pred EEecc
Q 011693 349 CSLAK 353 (479)
Q Consensus 349 v~~a~ 353 (479)
|.+|-
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 66653
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.25 E-value=0.00098 Score=48.75 Aligned_cols=57 Identities=16% Similarity=0.320 Sum_probs=45.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhC
Q 011693 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN 164 (479)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~ 164 (479)
.....++| ++|..+...||.++|+.||-| .|+-+-|- .|||.|.+++.|..|+..+.
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 33455666 999999999999999999954 45555542 59999999999999997653
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.24 E-value=0.0027 Score=48.74 Aligned_cols=72 Identities=17% Similarity=0.156 Sum_probs=59.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecC-eEEEEEec
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG-QALECSLA 352 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g-~~l~v~~a 352 (479)
..+.|.|-+.|... ...|..+|++||.|.+...... ..+-.|.|.+..+|++||. .|+..|.+ -.|-|...
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 34789999999885 6778899999999999887321 3599999999999999999 59999985 67778775
Q ss_pred c
Q 011693 353 K 353 (479)
Q Consensus 353 ~ 353 (479)
.
T Consensus 95 ~ 95 (119)
T 1wwh_A 95 I 95 (119)
T ss_dssp C
T ss_pred C
Confidence 4
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.24 E-value=0.00081 Score=49.18 Aligned_cols=55 Identities=18% Similarity=0.328 Sum_probs=46.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhC
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~ 338 (479)
.+.++| ++|..+-..+|.++|+.||.| .|+.+.|. .|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 377888 999999999999999999853 45555553 89999999999999999763
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.12 E-value=0.0008 Score=49.39 Aligned_cols=55 Identities=16% Similarity=0.298 Sum_probs=47.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhC
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~ 338 (479)
.+.|+| ++|..+-..+|.++|+.||. ..|+.+.|. .|||.|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 367777 99999999999999999984 466666664 89999999999999999874
No 393
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.10 E-value=0.0026 Score=48.91 Aligned_cols=72 Identities=13% Similarity=0.143 Sum_probs=59.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCC-eEEEEeec
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG-KKIRCSTS 178 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g-~~i~v~~~ 178 (479)
..+.|.|-+.|... ...|..+|++||.|++.... ....+-.|.|.++.+|++|| ..|+..|.+ -.|-|.++
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEEC
Confidence 46889999999985 55688899999999988862 13568999999999999999 679999985 66777765
Q ss_pred c
Q 011693 179 Q 179 (479)
Q Consensus 179 ~ 179 (479)
.
T Consensus 95 ~ 95 (119)
T 1wwh_A 95 I 95 (119)
T ss_dssp C
T ss_pred C
Confidence 4
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.94 E-value=0.0025 Score=46.92 Aligned_cols=78 Identities=13% Similarity=0.126 Sum_probs=58.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCC--cccEEEEEeCChHHHHHHHHHhCCceecC-----eEE
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE--KNRIGFVHFAERSSAMKALKNTEKYELDG-----QAL 347 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~--~~G~afV~F~~~~~A~~A~~~l~~~~~~g-----~~l 347 (479)
+.+|.|+.||+.+|++++.+.+...-.+.....+..+.+.. .-.-|||.|.+.++...-.+.+++..|-+ -+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 46899999999999999999888876665555544432221 11358999999999999999999988753 245
Q ss_pred EEEec
Q 011693 348 ECSLA 352 (479)
Q Consensus 348 ~v~~a 352 (479)
.|.+|
T Consensus 89 ~VE~A 93 (97)
T 2l08_A 89 VVEFA 93 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 56665
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.77 E-value=0.0021 Score=47.14 Aligned_cols=53 Identities=17% Similarity=0.301 Sum_probs=44.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhC
Q 011693 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN 164 (479)
Q Consensus 103 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~ 164 (479)
.++| ++|..+...||.++|+.|| =..|+-+-|- .|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3455 9999999999999999999 4456666552 59999999999999998764
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.68 E-value=0.0015 Score=48.14 Aligned_cols=70 Identities=17% Similarity=0.195 Sum_probs=51.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCC--CCcceEEEEeCCHHHHHHHHHHhCCCccC
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS--ENKGFAFVTFRNVELASKAIDKLNNTEFK 169 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g--~~~g~afV~F~~~~~A~~a~~~~~~~~~~ 169 (479)
.+-+|.||.||+.+|++++.+.+..+-.+.....+..+.+. ..-.-|||.|.+.+++....+..++..+.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 35679999999999999988888776554433333322221 11235999999999999999999988764
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.25 E-value=0.005 Score=47.97 Aligned_cols=78 Identities=18% Similarity=0.247 Sum_probs=56.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC---------CCC-----CCcceEEEEeCCHHHHHHHHHHhCCC
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGK---------DSS-----ENKGFAFVTFRNVELASKAIDKLNNT 166 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~---------~~g-----~~~g~afV~F~~~~~A~~a~~~~~~~ 166 (479)
...|.|=+.|.+.+. .|.+.|++||.|.+-.-..+. .+. ....+..|+|.++.+|.+|| ..|+.
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTC
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCe
Confidence 467888899887655 577899999998762211110 000 12457899999999999999 68999
Q ss_pred ccCCeEEEEeeccc
Q 011693 167 EFKGKKIRCSTSQA 180 (479)
Q Consensus 167 ~~~g~~i~v~~~~~ 180 (479)
.|.|..|=|.++.+
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99999888887753
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.03 E-value=0.013 Score=45.62 Aligned_cols=78 Identities=21% Similarity=0.227 Sum_probs=57.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEE-EEecCCCC--------CC-----CcccEEEEEeCChHHHHHHHHHhCCce
Q 011693 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITK-VVVPPAKP--------GQ-----EKNRIGFVHFAERSSAMKALKNTEKYE 341 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-v~i~~~~~--------~~-----~~~G~afV~F~~~~~A~~A~~~l~~~~ 341 (479)
.-|.|-+.|.+.+. .+.+.|++||.|.+ +.+.+... .. ....+-.|+|.+..+|.+||. .||..
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 57888888776554 57788999999876 32322110 00 113578999999999999999 59999
Q ss_pred ecCeEEEEEeccCC
Q 011693 342 LDGQALECSLAKPQ 355 (479)
Q Consensus 342 ~~g~~l~v~~a~~~ 355 (479)
|+|..|-|....+.
T Consensus 86 i~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 86 FNGVLLGVIPYTKD 99 (132)
T ss_dssp ETTEECEEEECCHH
T ss_pred eCcEEEEEEECCHH
Confidence 99998889887654
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.87 E-value=0.0044 Score=60.09 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=43.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHH
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~ 161 (479)
.++|||. .|..+++.+|.++|++||+|.++.+..+. .-||.|+|.+.+++.+++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 4899998 79999999999999999999999988763 3699999999999998774
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.71 E-value=0.0055 Score=59.43 Aligned_cols=55 Identities=15% Similarity=0.292 Sum_probs=43.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHH
Q 011693 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~ 336 (479)
+.|+|. .|..+++.+|.++|++||.|.++.+..++ .-||.|+|.+.+++..++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 789997 79999999999999999999999998765 35999999999999877653
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=89.33 E-value=1.2 Score=44.16 Aligned_cols=56 Identities=16% Similarity=0.301 Sum_probs=47.4
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhC
Q 011693 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (479)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~ 338 (479)
....|+|+ +|..+...+|.++|+.||. .+|+.+.+. .|||.|.+.+.|..++..++
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 34677777 8889999999999999995 467766653 89999999999999999885
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.29 E-value=1.6 Score=43.10 Aligned_cols=56 Identities=16% Similarity=0.310 Sum_probs=44.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCC
Q 011693 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNN 165 (479)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~ 165 (479)
...++|+ +|..+...+|.++|+.||.| +|+.+-+ ..|||.|.+.+.|..++..+..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 3455665 89999999999999999954 5554443 3699999999999999988753
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=80.22 E-value=13 Score=26.22 Aligned_cols=56 Identities=11% Similarity=0.097 Sum_probs=46.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhC
Q 011693 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (479)
Q Consensus 275 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~ 338 (479)
.+-|.|-|+|..+-..++--.....|---.+..+. |.|.|.|.+.++.+-|+..|-
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHE
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHH
Confidence 36788999999999998888888888766666653 689999999999999998863
No 404
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=79.97 E-value=0.35 Score=45.55 Aligned_cols=13 Identities=31% Similarity=0.365 Sum_probs=7.7
Q ss_pred CCCHHHHHHHHhh
Q 011693 286 NVTQDQLKKLFEH 298 (479)
Q Consensus 286 ~~t~~~l~~~F~~ 298 (479)
.+|.++|+++...
T Consensus 228 ~vt~~~l~~i~~~ 240 (358)
T 2pk2_A 228 TVTLELLDELTHE 240 (358)
T ss_dssp SCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 4566666666554
No 405
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=66.47 E-value=9.9 Score=26.21 Aligned_cols=59 Identities=12% Similarity=0.173 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHhhcCC-----eEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCceecCeEEEEEecc
Q 011693 286 NVTQDQLKKLFEHHGR-----ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (479)
Q Consensus 286 ~~t~~~l~~~F~~~G~-----v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (479)
.++..+|..++..-+. |-.|.|.. .|.||+- ....|..++..|++..+.|+.+.|..++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v-~~~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEI-LNGKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEE-CTTCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEE-CHHHHHHHHHHhccccCcCceEEEEECC
Confidence 4566677777765433 66788855 3899998 4566888899999999999999988764
No 406
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=61.63 E-value=39 Score=23.79 Aligned_cols=57 Identities=21% Similarity=0.248 Sum_probs=47.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhC
Q 011693 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN 164 (479)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~ 164 (479)
..|.|.|-|+|..+-..++.-.....|--..|..+ .|.|.|.|.+.++...|+..|-
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHH
Confidence 46889999999999999988888888876666654 3569999999999999998763
No 407
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=55.04 E-value=43 Score=22.81 Aligned_cols=68 Identities=19% Similarity=0.369 Sum_probs=41.6
Q ss_pred eEEEcCC-CCCCCHHHHHHHHHhcC-----CeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHHhCCCccCCeEEEEe
Q 011693 103 EVYIGGI-PHDASEHDLRDFCQSIG-----EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (479)
Q Consensus 103 ~l~V~nL-p~~~t~~~l~~~f~~~G-----~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~~~~~~~~g~~i~v~ 176 (479)
+|||..= -..++..+|..++..-+ .|-.|.|..+ |.||+-.... |..+++.|+...+.|+.+.|.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNGK-GPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTTC-HHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHHH-HHHHHHHhccccCcCceEEEE
Confidence 4555322 23377778888876544 3556666433 6888887654 667888899999999999887
Q ss_pred ecc
Q 011693 177 TSQ 179 (479)
Q Consensus 177 ~~~ 179 (479)
.+.
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 653
No 408
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=44.42 E-value=27 Score=28.54 Aligned_cols=49 Identities=16% Similarity=0.165 Sum_probs=35.4
Q ss_pred cEEEEcCCCC-C--------CCHHHHHHHH--hhcCCeEEEEecCCCCCCCcccEEEEEeCCh
Q 011693 276 KAVYVKNLPR-N--------VTQDQLKKLF--EHHGRITKVVVPPAKPGQEKNRIGFVHFAER 327 (479)
Q Consensus 276 ~~l~V~nLp~-~--------~t~~~l~~~F--~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~ 327 (479)
-.+.|-|+|. . .+...|++.| ..|..+. |+.+.++.+. +|++.|.|.+.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh--~g~aIv~F~~d 72 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGH--SGTAIVEFNKD 72 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBE--EEEEEEECCSS
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCC--ceeEEEEecCC
Confidence 4778889887 2 3457899977 9998754 5555555543 58999999853
No 409
>2z5n_B Heterogeneous nuclear ribonucleoprotein D0; nuclear transport, importin, exportin, karyopherin, nucleocytoplasmic, hnRNP, NLS, NES; 3.20A {Homo sapiens}
Probab=43.56 E-value=16 Score=19.43 Aligned_cols=11 Identities=55% Similarity=1.340 Sum_probs=7.2
Q ss_pred CCCCCCCCCCC
Q 011693 469 DGGHGQRYRPY 479 (479)
Q Consensus 469 ~g~~g~r~~py 479 (479)
+++..++|.||
T Consensus 14 ~~g~q~~y~Py 24 (26)
T 2z5n_B 14 RGGHQNSYKPY 24 (26)
T ss_pred CCcccccccCC
Confidence 33356688887
No 410
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=41.03 E-value=69 Score=22.74 Aligned_cols=56 Identities=18% Similarity=0.222 Sum_probs=39.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cCC-eEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHH
Q 011693 278 VYVKNLPRNVTQDQLKKLFEH-HGR-ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (479)
Q Consensus 278 l~V~nLp~~~t~~~l~~~F~~-~G~-v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~ 336 (479)
-++-.+...++.-+|++.++. |+. |..|..+.-+.+. --|||++..-.+|......
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~---KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGE---KKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSC---EEEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCc---eEEEEEcCCCCcHHHHHHh
Confidence 344556778999999999988 554 7777776655332 2699999887777765443
No 411
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=33.75 E-value=1e+02 Score=20.27 Aligned_cols=54 Identities=13% Similarity=0.057 Sum_probs=42.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHH
Q 011693 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~ 336 (479)
.+|.|.++.-..=...|...+.. -.|..+.+-.. .+-+.|.|.+.++...+|+.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHH
Confidence 57899999888888899999999 88888888654 36788898866666677765
No 412
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=33.01 E-value=75 Score=25.88 Aligned_cols=51 Identities=24% Similarity=0.193 Sum_probs=36.3
Q ss_pred ceEEEcCCCCC---------CCHHHHHHHH--HhcCCeeEEEEeeCCCCCCCcceEEEEeCCHHH
Q 011693 102 SEVYIGGIPHD---------ASEHDLRDFC--QSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155 (479)
Q Consensus 102 ~~l~V~nLp~~---------~t~~~l~~~f--~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~ 155 (479)
-.+.|-|+|.. .....|++.| ..|.++. |+.+-++ .-+.|+|.|.|.+.-.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWN 74 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChH
Confidence 35778898872 2347899977 9998876 4444443 3478999999987543
No 413
>2ot8_C HnRNP M, heterogeneous nuclear ribonucleoprotein M; heat repeat, nuclear import complex, karyopherin, transport protein; 3.10A {Homo sapiens}
Probab=31.80 E-value=15 Score=19.76 Aligned_cols=7 Identities=57% Similarity=1.564 Sum_probs=4.7
Q ss_pred CCCCCCC
Q 011693 473 GQRYRPY 479 (479)
Q Consensus 473 g~r~~py 479 (479)
|+||-||
T Consensus 18 gnrfepY 24 (30)
T 2ot8_C 18 GNRFEPY 24 (30)
T ss_pred Ccccccc
Confidence 5577776
No 414
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=31.52 E-value=10 Score=41.57 Aligned_cols=19 Identities=11% Similarity=-0.043 Sum_probs=11.8
Q ss_pred ceEEEEeCCHHHHHHHHHH
Q 011693 144 GFAFVTFRNVELASKAIDK 162 (479)
Q Consensus 144 g~afV~F~~~~~A~~a~~~ 162 (479)
+.++|.-.+.+-|......
T Consensus 228 ~rvlvl~PtraLa~Q~~~~ 246 (1108)
T 3l9o_A 228 QRVIYTSPIKALSNQKYRE 246 (1108)
T ss_dssp CEEEEEESSHHHHHHHHHH
T ss_pred CeEEEEcCcHHHHHHHHHH
Confidence 4577777777666554443
No 415
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=30.68 E-value=57 Score=23.23 Aligned_cols=26 Identities=27% Similarity=0.380 Sum_probs=21.8
Q ss_pred CeeEEEEeeCCCCCCCcceEEEEeCC
Q 011693 127 EVTEVRIMKGKDSSENKGFAFVTFRN 152 (479)
Q Consensus 127 ~v~~v~i~~~~~~g~~~g~afV~F~~ 152 (479)
+|++|+|.+-...++-++||-|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888888876678999999999963
No 416
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=27.27 E-value=68 Score=23.51 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=21.7
Q ss_pred CeeEEEEeeCCCCCCCcceEEEEeCC
Q 011693 127 EVTEVRIMKGKDSSENKGFAFVTFRN 152 (479)
Q Consensus 127 ~v~~v~i~~~~~~g~~~g~afV~F~~ 152 (479)
.|++|+|.+-...|+-++||-|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888888876678999999999963
No 417
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=26.82 E-value=13 Score=40.55 Aligned_cols=9 Identities=11% Similarity=0.076 Sum_probs=4.2
Q ss_pred ccEEEEEeC
Q 011693 317 NRIGFVHFA 325 (479)
Q Consensus 317 ~G~afV~F~ 325 (479)
.|++|+.+.
T Consensus 587 ~G~~ill~~ 595 (1108)
T 3l9o_A 587 RGIVIMMID 595 (1108)
T ss_dssp SEEEEEEEC
T ss_pred ceEEEEEec
Confidence 345555443
No 418
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=26.28 E-value=73 Score=23.54 Aligned_cols=26 Identities=27% Similarity=0.380 Sum_probs=21.6
Q ss_pred CeeEEEEeeCCCCCCCcceEEEEeCC
Q 011693 127 EVTEVRIMKGKDSSENKGFAFVTFRN 152 (479)
Q Consensus 127 ~v~~v~i~~~~~~g~~~g~afV~F~~ 152 (479)
.|++|+|.+-...|+-++||-|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 57888888776678999999999963
No 419
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=25.41 E-value=1.1e+02 Score=21.62 Aligned_cols=53 Identities=11% Similarity=0.164 Sum_probs=37.4
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cCC-eEEEEecCCCCCCCcccEEEEEeCChHHHHHH
Q 011693 278 VYVKNLPRNVTQDQLKKLFEH-HGR-ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333 (479)
Q Consensus 278 l~V~nLp~~~t~~~l~~~F~~-~G~-v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A 333 (479)
-++-.+...+|.-+|++.++. |+. |..|..+.-+.+ .--|||++..-.+|...
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~---~KKA~VtL~~g~~aid~ 78 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDG---EKKAVVRLSEDDDAQEV 78 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTS---SEEEEEEECTTSCHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCC---ceEEEEEECCCCcHHHH
Confidence 345556789999999999987 564 777777665532 22699999877665544
No 420
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=24.04 E-value=1.6e+02 Score=23.10 Aligned_cols=55 Identities=16% Similarity=0.199 Sum_probs=38.4
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cCC-eEEEEecCCCCCCCcccEEEEEeCChHHHHHHHH
Q 011693 278 VYVKNLPRNVTQDQLKKLFEH-HGR-ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335 (479)
Q Consensus 278 l~V~nLp~~~t~~~l~~~F~~-~G~-v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~ 335 (479)
-++--+...++.-+|++.++. |+. |..|..+.-+.+.. -|||++..-.+|.....
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~K---KAyV~L~~~~daldvAn 137 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTK---KAYVRLTADYDALDIAN 137 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCE---EEEEEECTTCCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCce---EEEEEeCCCCcHHHHHH
Confidence 344445678999999999887 564 77777766654322 69999987767665543
No 421
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=23.89 E-value=2.5e+02 Score=21.57 Aligned_cols=113 Identities=11% Similarity=0.092 Sum_probs=62.4
Q ss_pred HHHHHHHHhhCCCeeEEEEeecCCCCCCCceEEEEEeCCHhHHHHHHHhccCCCcccCCCCCeeeeCCCCCCCCCCCccc
Q 011693 196 EDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQV 275 (479)
Q Consensus 196 ~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (479)
..+..+|...+-.|..+..... . ..++-.+.+.+.+.+..+++...- . +. .
T Consensus 21 ~~i~~~la~~~inI~~i~~~~~-~----~~~~~~~~~~d~~~a~~~L~~~G~---~-------v~--------------~ 71 (144)
T 2f06_A 21 TEVTEVLAKENINLSALCIAEN-A----DFGILRGIVSDPDKAYKALKDNHF---A-------VN--------------I 71 (144)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEC-S----SCEEEEEEESCHHHHHHHHHHTTC---C-------EE--------------E
T ss_pred HHHHHHHHHCCCCEEEEEEEec-C----CCCEEEEEeCCHHHHHHHHHHcCC---e-------Ee--------------e
Confidence 5566777777766666655322 1 113222235666666666665321 1 00 0
Q ss_pred cEEEEcCCCCCC-CHHHHHHHHhhcCC-eEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCCcee
Q 011693 276 KAVYVKNLPRNV-TQDQLKKLFEHHGR-ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL 342 (479)
Q Consensus 276 ~~l~V~nLp~~~-t~~~l~~~F~~~G~-v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~~~~ 342 (479)
..++.-.++... .-..+...+...|. |..+.... .. .+..+.|.+.+.+.|.++|+. .|+.+
T Consensus 72 ~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~-~~---~~~~~~i~~~d~~~A~~~L~~-~g~~v 135 (144)
T 2f06_A 72 TDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA-NN---NVANVVIRPSNMDKCIEVLKE-KKVDL 135 (144)
T ss_dssp EEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE-ET---TEEEEEEEESCHHHHHHHHHH-TTCEE
T ss_pred eeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc-cC---CcEEEEEEeCCHHHHHHHHHH-cCCEE
Confidence 123332454333 34566777777665 65555442 11 156778899999999999886 56554
No 422
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=23.02 E-value=18 Score=36.48 Aligned_cols=11 Identities=9% Similarity=0.437 Sum_probs=4.6
Q ss_pred CCCcceEEEEe
Q 011693 140 SENKGFAFVTF 150 (479)
Q Consensus 140 g~~~g~afV~F 150 (479)
.+++-.-||-|
T Consensus 398 ~~sr~vQFl~F 408 (649)
T 3tj1_A 398 YYTRSIQYIMF 408 (649)
T ss_dssp CSCSSTTHHHH
T ss_pred ccCccHHHHHH
Confidence 34444444444
No 423
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=22.72 E-value=1.6e+02 Score=23.28 Aligned_cols=54 Identities=19% Similarity=0.258 Sum_probs=37.7
Q ss_pred EEcCCCCCCCHHHHHHHHhh-cCC-eEEEEecCCCCCCCcccEEEEEeCChHHHHHHHH
Q 011693 279 YVKNLPRNVTQDQLKKLFEH-HGR-ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335 (479)
Q Consensus 279 ~V~nLp~~~t~~~l~~~F~~-~G~-v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~ 335 (479)
++--+...++.-+|++.++. |+. |..|..+.-+.+.. -|||++..-.+|.....
T Consensus 90 ~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~K---KAyV~La~~~dAldvAn 145 (150)
T 4a17_R 90 MVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNK---KAYIRLAADSDSLTLAN 145 (150)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCE---EEEEEECSSSCHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcE---EEEEEcCCCCcHHHHHH
Confidence 34445678899999999887 554 77777766654322 69999987766665543
No 424
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=22.52 E-value=2.1e+02 Score=20.29 Aligned_cols=33 Identities=6% Similarity=0.145 Sum_probs=26.1
Q ss_pred eEEEEecCCCCCCCcccEEEEEeCChHHHHHHHHHhCC
Q 011693 302 ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (479)
Q Consensus 302 v~~v~i~~~~~~~~~~G~afV~F~~~~~A~~A~~~l~~ 339 (479)
|.++.++.. ..||.||++...++...+++.+.+
T Consensus 40 i~~v~vP~~-----fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 40 VYSILASES-----LKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp EEEEEECTT-----STTEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEEecc-----cCCEEEEEEecchhHHHHHHCCCC
Confidence 667777653 379999999999988888887654
No 425
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=21.67 E-value=1.9e+02 Score=20.08 Aligned_cols=48 Identities=8% Similarity=0.195 Sum_probs=39.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeC
Q 011693 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325 (479)
Q Consensus 276 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~ 325 (479)
+.+.|.+.-..+-...|.+++.++..|..+..-....++. |.-+|.+.
T Consensus 35 ~v~IIHGkG~GvLr~~V~~~L~~~~~V~~f~~a~~~~GG~--Gat~V~Lk 82 (83)
T 2zqe_A 35 TLRLLHGKGTGALRQAIREALRRDKRVESFADAPPGEGGH--GVTVVALR 82 (83)
T ss_dssp EEEEECCSTTSHHHHHHHHHHHHCTTEEEEEECCTTTTGG--GEEEEEEC
T ss_pred EEEEEECCCchHHHHHHHHHHhcCCceeEEEEcCcccCCC--EEEEEEEe
Confidence 6778888887888889999999998999999888777766 77788764
No 426
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=21.21 E-value=1.5e+02 Score=21.43 Aligned_cols=60 Identities=8% Similarity=0.032 Sum_probs=40.5
Q ss_pred ceEEEEeCCHHHHHHHHH---HhCCCccCCeEEEEeecccccccccCCCCCCCCHHHHHHHHHhh
Q 011693 144 GFAFVTFRNVELASKAID---KLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEV 205 (479)
Q Consensus 144 g~afV~F~~~~~A~~a~~---~~~~~~~~g~~i~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~ 205 (479)
-|+++.|.-+.++.+-++ .++...+.--.|++........+|| |.++++++.+..+...+
T Consensus 6 ~Y~~~~~~a~~~~v~eler~~r~~e~vlR~l~v~~e~Mr~YE~m~I--l~P~l~ee~~~~~ve~~ 68 (96)
T 2kjw_A 6 YFLWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTTPGRYEVNIV--LNPNLDQSQLALEKEII 68 (96)
T ss_dssp CCEEECCCCCHHHHHHHHHHHHHCTTCSEEEEEECSSSSCEEEEEE--CCSSCCHHHHHHHHHHH
T ss_pred EEEEEEeecChhHHHHHHHHhccchhhhhhhheehhhhhhhheeee--eCCCCCHHHHHHHHHHH
Confidence 378999998887777665 3566666555555554445566666 67788887777666655
No 427
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A {Saccharomyces cerevisiae}
Probab=21.14 E-value=20 Score=36.79 Aligned_cols=10 Identities=10% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHHHHHh
Q 011693 328 SSAMKALKNT 337 (479)
Q Consensus 328 ~~A~~A~~~l 337 (479)
..|..+++.|
T Consensus 912 ~kAV~iCE~L 921 (956)
T 4aco_A 912 YKAVDICEKL 921 (956)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 428
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=20.51 E-value=20 Score=28.62 Aligned_cols=28 Identities=18% Similarity=0.219 Sum_probs=18.5
Q ss_pred HHHHHHHhhcCCeEEEEecCCCCCCCcccEEEEEeC
Q 011693 290 DQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325 (479)
Q Consensus 290 ~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~F~ 325 (479)
+++.++|...|.|+++... +||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~--------kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVR--------MGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETT--------TTEEEEEEE
T ss_pred CcccccccceeEEEEEECC--------CCeeEEeeC
Confidence 4556777778888776552 699999975
No 429
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=20.27 E-value=89 Score=22.20 Aligned_cols=26 Identities=12% Similarity=0.186 Sum_probs=20.8
Q ss_pred CeEEEEecCCCCCCCcccEEEEEeCC
Q 011693 301 RITKVVVPPAKPGQEKNRIGFVHFAE 326 (479)
Q Consensus 301 ~v~~v~i~~~~~~~~~~G~afV~F~~ 326 (479)
.|++|+|.+-...+.-++||-|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 58888887776666678999999964
Done!