BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011695
         (479 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1L2F|A Chain A, Crystal Structure Of Nusa From Thermotoga Maritima: A
           Structure-Based Role Of The N-Terminal Domain
          Length = 369

 Score = 28.9 bits (63), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 11/94 (11%)

Query: 288 CIGE---------KKINGEDCFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLV 338
           CIGE         K++ GE   +LK   DP+ L A +  PA +I   +    ++   +LV
Sbjct: 275 CIGEGGSRIAAILKELKGEKLDVLKWSDDPKQLIANALAPATVIEVEILDKENKAARVLV 334

Query: 339 YMEDSHLTRIQSNGGDAVYWETTINSFLDDYRPV 372
               + L+     GG        +  +  D +P+
Sbjct: 335 --PPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 366


>pdb|2P6P|A Chain A, X-Ray Crystal Structure Of C-C Bond-Forming
           Dtdp-D-Olivose-Transferase Urdgt2
 pdb|2P6P|B Chain B, X-Ray Crystal Structure Of C-C Bond-Forming
           Dtdp-D-Olivose-Transferase Urdgt2
          Length = 384

 Score = 28.5 bits (62), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 15/100 (15%)

Query: 228 WYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQ--GLDPRTTASMFAD 285
           W  +L VGG+  +            P L  H      R    A+   G+ P   A +  +
Sbjct: 106 WRPDLIVGGTMSYVA----------PLLALHLGVPHARQTWDAVDADGIHPGADAELRPE 155

Query: 286 ARCIGEKKINGEDCFILKLCADPQTLKARSEGPAEIIRHV 325
              +G +++   D FI  +C  P +L+  +  PA ++RHV
Sbjct: 156 LSELGLERLPAPDLFI-DIC--PPSLRPANAAPARMMRHV 192


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.132    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,315,168
Number of Sequences: 62578
Number of extensions: 546866
Number of successful extensions: 4157
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 4153
Number of HSP's gapped (non-prelim): 19
length of query: 479
length of database: 14,973,337
effective HSP length: 103
effective length of query: 376
effective length of database: 8,527,803
effective search space: 3206453928
effective search space used: 3206453928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)