BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011695
         (479 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q47JV4|GATA_DECAR Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dechloromonas
           aromatica (strain RCB) GN=gatA PE=3 SV=1
          Length = 485

 Score = 35.8 bits (81), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 18/119 (15%)

Query: 307 DPQTLKARSEG-PAEIIRHVLFGYFSQKTGLL--VYMEDSHLTRIQSNGGDAVYWETTIN 363
           D   +K R++G  AE+ R +L G +    G     Y++   + R+ +N            
Sbjct: 338 DDMYMKTRAQGFGAEVKRRILIGAYVLSHGYYDAYYLQAQRIRRLIAN------------ 385

Query: 364 SFLDDYRPVEGIMIAHSGRSVVTLFRFGEVAMSHSKTKMEEAWTIEEVAFNVPGLSVDC 422
            F++ ++  + IM   S  S  T F+ GE A    +  + + +TI      +PG+S+ C
Sbjct: 386 DFVEAFKHCDVIM---SPTSPSTAFKLGEKAADPVQMYLSDIYTIAVNLAGLPGMSIPC 441


>sp|B3PC08|GATA_CELJU Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Cellvibrio
           japonicus (strain Ueda107) GN=gatA PE=3 SV=1
          Length = 484

 Score = 35.0 bits (79), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 19/124 (15%)

Query: 305 CADPQTL-----KARSEG-PAEIIRHVLFGYFSQKTGLLVYMEDSHLTRIQSNGGDAVYW 358
           C DP+ L     ++RSEG  AE+ R +L G ++   G      D++ ++ Q         
Sbjct: 330 CEDPKDLMDLYMRSRSEGFGAEVKRRILVGTYALSAGYY----DAYYSKAQK------VR 379

Query: 359 ETTINSFLDDYRPVEGIMIAHSGRSVVTLFRFGEVAMSHSKTKMEEAWTIEEVAFNVPGL 418
                 F+D +  V+ I+      S    F FG          +E+ +TI      +PGL
Sbjct: 380 RLIKQDFVDAFHHVDVIL---GPTSPSPAFEFGSKGKDPVAMYLEDIYTIATNLAGLPGL 436

Query: 419 SVDC 422
           S+ C
Sbjct: 437 SIPC 440


>sp|Q9M9M4|CSLD3_ARATH Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3
           PE=1 SV=1
          Length = 1145

 Score = 33.1 bits (74), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 11/107 (10%)

Query: 110 RTPSVSAMAYRRSDLRLLLGVMGAPLAPVHVSDNDPLPHLSIKDTPIEASSAQYILQQYT 169
           RTPS   + Y R DL   LG +      VH+    P P     + P++ S +Q + +QY 
Sbjct: 39  RTPSGRYVNYSRDDLDSELGSVDLTGYSVHIP---PTP----DNQPMDPSISQKVEEQYV 91

Query: 170 AASGGQKLQNSIRNAYAMGKVRMVASEFETAARTVKNRNATRCAESG 216
           + S      NS+  A+ M KV     + ET+   +     + CA  G
Sbjct: 92  SNSLFTGGFNSVTRAHLMEKV----IDTETSHPQMAGAKGSSCAVPG 134


>sp|B9KYX5|RL10_THERP 50S ribosomal protein L10 OS=Thermomicrobium roseum (strain ATCC
           27502 / DSM 5159 / P-2) GN=rplJ PE=3 SV=1
          Length = 179

 Score = 32.0 bits (71), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 63/158 (39%), Gaps = 28/158 (17%)

Query: 32  SMSPISSLLRRRKNQSSNHHHHQVATQEQLVSRSGSLRPVVGEALAPLMEGP-------- 83
           S++ +++  RR + Q +N    +         R+G+      E + PL+EGP        
Sbjct: 32  SVADMTAFRRRLQEQQANFRVVKNTLTRIAAERTGT------EVITPLLEGPTALVYSMG 85

Query: 84  DPDGA-----ELGESKRVGSGLGNWVKGQLSRTPSVSAMAYRRSDLRLLLGVMGAPLAPV 138
           DP  A     E     R+ S  G  + G+L     V A+A       LL  V+G   AP+
Sbjct: 86  DPVAAAKLTLEFARQSRILSVKGGLLAGRLLSAADVEALATLPPREELLAKVVGGLQAPL 145

Query: 139 HVSDNDPLPHLSIKDTPIEASSAQYILQQYTAASGGQK 176
           +         +S+   PI      Y+LQ      GG++
Sbjct: 146 Y-------GLVSVLSGPIR--GLLYVLQARVRQLGGEE 174


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.131    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,354,359
Number of Sequences: 539616
Number of extensions: 7177100
Number of successful extensions: 18829
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 18826
Number of HSP's gapped (non-prelim): 10
length of query: 479
length of database: 191,569,459
effective HSP length: 121
effective length of query: 358
effective length of database: 126,275,923
effective search space: 45206780434
effective search space used: 45206780434
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)