Query 011695
Match_columns 479
No_of_seqs 95 out of 97
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 04:12:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011695.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011695hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04788 DUF620: Protein of un 100.0 2E-134 4E-139 960.7 21.8 243 184-426 1-245 (245)
2 PF09865 DUF2092: Predicted pe 83.1 6.2 0.00014 38.4 8.3 89 219-308 44-150 (214)
3 PRK09455 rseB anti-sigma E fac 68.3 6.3 0.00014 40.3 4.1 46 285-342 128-173 (319)
4 PF14371 DUF4412: Domain of un 53.7 22 0.00047 28.7 4.0 17 289-305 4-20 (89)
5 COG2834 LolA Outer membrane li 48.5 63 0.0014 30.6 6.9 109 218-342 61-171 (211)
6 KOG0968 DNA polymerase zeta, c 41.0 0.98 2.1E-05 53.5 -7.5 82 318-415 758-842 (1488)
7 PF11271 DUF3068: Protein of u 40.7 66 0.0014 32.4 5.9 61 285-345 163-237 (301)
8 PF03888 MucB_RseB: MucB/RseB 37.8 51 0.0011 33.1 4.6 48 283-342 94-141 (285)
9 PF05717 TnpB_IS66: IS66 Orf2 28.3 44 0.00095 29.5 2.2 46 213-278 53-100 (107)
10 PRK02939 lipoprotein; Reviewed 22.8 1.7E+02 0.0038 29.7 5.4 67 186-252 42-128 (236)
11 PF07161 DUF1396: Protein of u 22.7 87 0.0019 30.0 3.2 85 222-316 56-144 (192)
12 KOG2833 Mevalonate pyrophospha 22.1 74 0.0016 34.1 2.8 55 207-261 155-229 (395)
13 PF03043 Herpes_UL87: Herpesvi 21.6 25 0.00055 39.1 -0.6 69 340-414 337-406 (538)
14 cd06911 VirB9_CagX_TrbG VirB9/ 20.2 2.6E+02 0.0057 23.1 5.2 52 340-392 22-77 (86)
15 COG5017 Uncharacterized conser 20.1 27 0.00058 33.5 -0.7 30 358-391 55-85 (161)
No 1
>PF04788 DUF620: Protein of unknown function (DUF620); InterPro: IPR006873 This is a family of uncharacterised proteins.
Probab=100.00 E-value=1.7e-134 Score=960.73 Aligned_cols=243 Identities=73% Similarity=1.252 Sum_probs=239.3
Q ss_pred hhhcceeeeeeeeeccccceeccCCCccccccccEEEEeeCCCceEEEEEecCeeEEeecCCceeeecCCCCCCcCCCCC
Q 011695 184 AYAMGKVRMVASEFETAARTVKNRNATRCAESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGP 263 (479)
Q Consensus 184 myA~GkVrM~~sE~~~~~~~v~~~g~~~~~E~GgFVlWQm~Pd~W~vELvVgG~KV~AGsDGkvaWRhTPw~gsHAakGp 263 (479)
|||||||||.++||+++++.++..+.++.+|+||||||||+|||||+||||||+||+||||||||||||||||+||+|||
T Consensus 1 mya~GkVrM~~se~~~~~~~~~~~~~~~~~e~GgFVlWQ~~Pd~W~~ELvVgG~KV~AGsdGkvaWR~Tpw~g~HAakGp 80 (245)
T PF04788_consen 1 MYAMGKVRMAASEFEGGSGSVTKVGPTGGGEKGGFVLWQMNPDMWYLELVVGGCKVSAGSDGKVAWRHTPWQGSHAAKGP 80 (245)
T ss_pred CceeeeEEEEEEeeccCCccccccccCcccccccEEEEEeCCCeEEEEEEecceEEeeccCCeeeeecCccccchhhcCC
Confidence 89999999999999999888877667788999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHhhhcCCcccccccccceeeeeeeeecCceeEEEEeecChhhhhccCCCCceEEEeeeeeccccccceeEEeece
Q 011695 264 VRPLRRALQGLDPRTTASMFADARCIGEKKINGEDCFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVYMEDS 343 (479)
Q Consensus 264 ~RPLRR~lQGLDPr~tA~lF~~A~ciGEK~I~GeDCFvLKl~ad~~~L~arS~g~aEiIrH~~~GYFSQrTGLLV~lEDS 343 (479)
+|||||+|||||||+||+||++|+|||||+|||||||||||++|+++|++||++++|||||++|||||||||||||||||
T Consensus 81 ~RPLRR~lQGLDPr~ta~lF~~A~cvGEk~i~gedCFvLkl~ad~~~l~ars~~~~EiirH~~~GYFSQrtGLLv~lEDS 160 (245)
T PF04788_consen 81 PRPLRRFLQGLDPRSTANLFSNAVCVGEKRINGEDCFVLKLEADPSALKARSSGNAEIIRHTLWGYFSQRTGLLVQLEDS 160 (245)
T ss_pred CchHHHHHhhcChhhHHHhhhhceEeeeeccCCcccEEEEeeCCHHHHhhhcCCCcEEEEEeeecccccccceeeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeeec--CCCCceEEEeeeeeccccccccCceeeeccCcceEEEEEeccccccccccceeeeeeeeeeeccCCCCCcc
Q 011695 344 HLTRIQS--NGGDAVYWETTINSFLDDYRPVEGIMIAHSGRSVVTLFRFGEVAMSHSKTKMEEAWTIEEVAFNVPGLSVD 421 (479)
Q Consensus 344 ~LtRiqs--~g~~~vyWETtieS~i~DYR~VdGV~IAH~G~t~vtl~RfGe~~~~h~~TrMEE~WtIeeV~FNVpGLS~D 421 (479)
||||||+ +++++|||||||+|.|+|||+||||||||+|+|+||||||||++++|+||||||+|+||||||||||||||
T Consensus 161 ~L~ri~~~~~~~~~vyWETt~es~i~DYR~Vdgv~IAH~G~t~vtl~RfGe~~~~h~rTrmEE~W~Ieev~FNV~GLS~D 240 (245)
T PF04788_consen 161 HLTRIQSGRPGGDAVYWETTMESSIEDYRAVDGVNIAHSGRTVVTLFRFGENSMSHSRTRMEETWTIEEVDFNVPGLSMD 240 (245)
T ss_pred eeEEeeecCCCCCceEEEEeecccccccccccceeeeccCCceEEEEecccccccCceeeEeeeeEeeeEEeccCCcchh
Confidence 9999999 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 011695 422 CFIPP 426 (479)
Q Consensus 422 cFiPP 426 (479)
|||||
T Consensus 241 cFiPP 245 (245)
T PF04788_consen 241 CFIPP 245 (245)
T ss_pred cccCC
Confidence 99999
No 2
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=83.14 E-value=6.2 Score=38.45 Aligned_cols=89 Identities=16% Similarity=0.209 Sum_probs=67.8
Q ss_pred EEEeeCCCceEEEEEecCeeEEeecCCceeeecCCCCCCcCCCCCChhh----HHhhh--cCCccccccc----------
Q 011695 219 VLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPL----RRALQ--GLDPRTTASM---------- 282 (479)
Q Consensus 219 VlWQm~Pd~W~vELvVgG~KV~AGsDGkvaWRhTPw~gsHAakGp~RPL----RR~lQ--GLDPr~tA~l---------- 282 (479)
-+|--.||+.++++.=++.....=+|||...=..|-+.-=|..-.|--| .++.+ |++.- .|+|
T Consensus 44 ~v~v~RPdklr~~~~gd~~~~~~~yDGkt~Tl~~~~~n~Ya~~~aP~tid~~i~~l~~~~gi~~P-~aDll~~d~~~~l~ 122 (214)
T PF09865_consen 44 TVTVQRPDKLRIDRRGDGADREFYYDGKTFTLYDPNQNVYAQADAPGTIDAAIDYLRDKYGIELP-LADLLYSDPYDALM 122 (214)
T ss_pred EEEEeCCCeEEEEEEcCCcceEEEECCCEEEEEcCcCCeEEeccCCCCHHHHHHHHHHhhCCCcc-HHHhcccCchHHHh
Confidence 4788999999999988889999999999999999998877766433333 33322 33321 1333
Q ss_pred --ccceeeeeeeeecCceeEEEEeecCh
Q 011695 283 --FADARCIGEKKINGEDCFILKLCADP 308 (479)
Q Consensus 283 --F~~A~ciGEK~I~GeDCFvLKl~ad~ 308 (479)
+.++.+||...|||..|+-|-...+.
T Consensus 123 ~~v~~~~~vG~~~V~G~~c~HlAfr~~~ 150 (214)
T PF09865_consen 123 DGVTSAKYVGQSVVGGVECDHLAFRNDD 150 (214)
T ss_pred hcceEEEEeeeEEECCEEeEEEEEecCC
Confidence 56679999999999999999887654
No 3
>PRK09455 rseB anti-sigma E factor; Provisional
Probab=68.27 E-value=6.3 Score=40.29 Aligned_cols=46 Identities=13% Similarity=0.303 Sum_probs=35.6
Q ss_pred ceeeeeeeeecCceeEEEEeecChhhhhccCCCCceEEEeeeeeccccccceeEEeec
Q 011695 285 DARCIGEKKINGEDCFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVYMED 342 (479)
Q Consensus 285 ~A~ciGEK~I~GeDCFvLKl~ad~~~L~arS~g~aEiIrH~~~GYFSQrTGLLV~lED 342 (479)
+....|+++|+|-+|++|.+.+.-. . |...-=|-++.|||++|.+-
T Consensus 128 ~~~~~g~~rVaGr~~~vi~~~PkD~-------~-----rY~~~lwiD~et~llLk~~~ 173 (319)
T PRK09455 128 DFISVGRTRIADRLCQVIRIVPKDG-------T-----RYSYIVWIDEESKLPLRVDL 173 (319)
T ss_pred eEEEccccEECCeeEEEEEEEECCC-------C-----CcceEEEEEcCCCCEEeEEE
Confidence 5678999999999999999998542 1 22233357999999999774
No 4
>PF14371 DUF4412: Domain of unknown function (DUF4412)
Probab=53.71 E-value=22 Score=28.68 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=15.7
Q ss_pred eeeeeecCceeEEEEee
Q 011695 289 IGEKKINGEDCFILKLC 305 (479)
Q Consensus 289 iGEK~I~GeDCFvLKl~ 305 (479)
.|.|+|+|-+|-..++.
T Consensus 4 tGt~tI~G~~c~ky~v~ 20 (89)
T PF14371_consen 4 TGTKTIAGYKCEKYEVT 20 (89)
T ss_pred CCCEEECCEEeEEEEEE
Confidence 58899999999999997
No 5
>COG2834 LolA Outer membrane lipoprotein-sorting protein [Cell envelope biogenesis, outer membrane]
Probab=48.51 E-value=63 Score=30.64 Aligned_cols=109 Identities=16% Similarity=0.186 Sum_probs=61.1
Q ss_pred EEEEeeCCCceEEEEEecCeeEEeecCCceeeecCCCCCCcCCCCCChhhHHhhhcCCcccccccccce--eeeeeeeec
Q 011695 218 FVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTASMFADA--RCIGEKKIN 295 (479)
Q Consensus 218 FVlWQm~Pd~W~vELvVgG~KV~AGsDGkvaWRhTPw~gsHAakGp~RPLRR~lQGLDPr~tA~lF~~A--~ciGEK~I~ 295 (479)
..+|.+.|++-+.|..=-+.. +-=|||+.+|=..|-..--..--...++.-.-=-|.....+++..+. ...|++.+
T Consensus 61 g~~~~kkP~~~R~~~~~p~~~-~ivsdG~~v~iydp~~~q~~~~~~~~~~~~tp~~~~~~~~~~~~~~~~v~~~g~~~~- 138 (211)
T COG2834 61 GKLWIKRPNLFRWEYESPDEQ-VIVSDGKTVWIYDPDLEQVTKTWLSEATGNTPLMLLLSNIKDLLNEYNVSLLGTSDV- 138 (211)
T ss_pred EEEEEecCCeEEEEecCCCCc-EEEECCCEEEEECCCCceEEEEecCCCCCCCchhhhhhhhhhhhccceeEeccccce-
Confidence 788999999999998764333 56689999999999874332222222211100001111222222221 34444444
Q ss_pred CceeEEEEeecChhhhhccCCCCceEEEeeeeeccccccceeEEeec
Q 011695 296 GEDCFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVYMED 342 (479)
Q Consensus 296 GeDCFvLKl~ad~~~L~arS~g~aEiIrH~~~GYFSQrTGLLV~lED 342 (479)
|++|.+.+... -..+. .+=+|+.+++.+.++|.
T Consensus 139 ---~~~l~l~pk~~----~~~~~-------~~i~vd~~~~~~~~~~~ 171 (211)
T COG2834 139 ---AYVLELTPKAN----LGNSK-------QRIIVDKEDGTPLRFEL 171 (211)
T ss_pred ---eEEEEeccccc----CCCCc-------EEEEEEcCCceEEEEEE
Confidence 99999888651 11111 23456777777777664
No 6
>KOG0968 consensus DNA polymerase zeta, catalytic subunit [Replication, recombination and repair]
Probab=40.97 E-value=0.98 Score=53.48 Aligned_cols=82 Identities=30% Similarity=0.461 Sum_probs=51.1
Q ss_pred CceEEEeeeeeccccccceeEEeeceeEEeeecCCCCceEEEeeeeecccc---ccccCceeeeccCcceEEEEEecccc
Q 011695 318 PAEIIRHVLFGYFSQKTGLLVYMEDSHLTRIQSNGGDAVYWETTINSFLDD---YRPVEGIMIAHSGRSVVTLFRFGEVA 394 (479)
Q Consensus 318 ~aEiIrH~~~GYFSQrTGLLV~lEDS~LtRiqs~g~~~vyWETtieS~i~D---YR~VdGV~IAH~G~t~vtl~RfGe~~ 394 (479)
..||++|. ||||=+|.-+|=.==--.+.||+.. +++.++-=+. |-..-|||| .||-++.+.|-=-+.
T Consensus 758 GyEi~~~S-WGyl~eR~~~l~~di~~~lsRv~~~-------~~~n~~d~~~ewg~tt~S~i~i--~GR~~lNiWRilR~e 827 (1488)
T KOG0968|consen 758 GYEIHNLS-WGYLIERAKLLGIDISRDLSRVKCY-------EKTNESDDEREWGYTTISGINI--VGRHVLNIWRILRSE 827 (1488)
T ss_pred eeeecccc-hHHHHHHHHHhcchHHHHHhcCCCh-------hhhhhhhhhhhccceeeccccc--cchhhhhHHHHHhhh
Confidence 36999998 9999999655421111125566654 3333332232 555668887 588888888864333
Q ss_pred ccccccceeeeeeeeeeeccC
Q 011695 395 MSHSKTKMEEAWTIEEVAFNV 415 (479)
Q Consensus 395 ~~h~~TrMEE~WtIeeV~FNV 415 (479)
++-+ ..|||.|.|||
T Consensus 828 V~L~------nYtlEsv~~nV 842 (1488)
T KOG0968|consen 828 VALT------NYTLESVVFNV 842 (1488)
T ss_pred hhhh------hccHHHHHHHH
Confidence 3332 27899999997
No 7
>PF11271 DUF3068: Protein of unknown function (DUF3068); InterPro: IPR021424 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=40.69 E-value=66 Score=32.36 Aligned_cols=61 Identities=21% Similarity=0.367 Sum_probs=40.6
Q ss_pred ceeeeeeeeecCceeEEEEeecChhhhh----------cc-CCCCceEEEe-e--eeeccccccceeEEeeceeE
Q 011695 285 DARCIGEKKINGEDCFILKLCADPQTLK----------AR-SEGPAEIIRH-V--LFGYFSQKTGLLVYMEDSHL 345 (479)
Q Consensus 285 ~A~ciGEK~I~GeDCFvLKl~ad~~~L~----------ar-S~g~aEiIrH-~--~~GYFSQrTGLLV~lEDS~L 345 (479)
.+.++||+.|||.+.|.-.-+..+..|. +. ..+.+.+=+| . -.=|-+|.||+.|..+-.+-
T Consensus 163 p~~f~ge~~v~G~~vY~F~q~i~~t~l~~~~~~~~~~~~~~~~~~v~~~~~y~~~r~lwVeP~TG~iV~~~e~~~ 237 (301)
T PF11271_consen 163 PADFVGEEEVDGREVYRFEQEIPPTDLASDEDSTRTLPASLPGGSVTMDRYYSATRTLWVEPVTGVIVDVEEDQH 237 (301)
T ss_pred ceEeccceEECCEEEEEEEEEeCCcccCcccccccccccccCCCccEEEEEEeeeEEEEEcCCCCcEEeeEEEEE
Confidence 3499999999999999998887776655 11 1122222111 0 12257899999999887544
No 8
>PF03888 MucB_RseB: MucB/RseB family; InterPro: IPR005588 The members of this family are regulators of the anti-sigma E protein RseD.; PDB: 2P4B_B 2V42_B 2V43_A 3M4W_A.
Probab=37.78 E-value=51 Score=33.07 Aligned_cols=48 Identities=17% Similarity=0.213 Sum_probs=34.1
Q ss_pred ccceeeeeeeeecCceeEEEEeecChhhhhccCCCCceEEEeeeeeccccccceeEEeec
Q 011695 283 FADARCIGEKKINGEDCFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVYMED 342 (479)
Q Consensus 283 F~~A~ciGEK~I~GeDCFvLKl~ad~~~L~arS~g~aEiIrH~~~GYFSQrTGLLV~lED 342 (479)
+=+....|..+|-|-+|-+|.|.+.-. . |+.+.=|-+++||||+|.+-
T Consensus 94 ~Y~~~~~G~~RVAGr~a~~i~l~PkD~-------~-----RYgy~lWiD~etgLlLK~~~ 141 (285)
T PF03888_consen 94 HYQFVLGGRERVAGREAQVIRLEPKDD-------Y-----RYGYRLWIDEETGLLLKSDL 141 (285)
T ss_dssp TEEEEEEEEEEETTEEEEEEEEEETTS-------------S-EEEEEEETTT--EEEEEE
T ss_pred cCceEECCCceECCCEEEEEEEEEcCC-------C-----ceEEEEEEEcCCCCEEeeee
Confidence 344577899999999999999998442 2 33344457999999999874
No 9
>PF05717 TnpB_IS66: IS66 Orf2 like protein; InterPro: IPR008878 Thess proteins are found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=28.29 E-value=44 Score=29.46 Aligned_cols=46 Identities=24% Similarity=0.412 Sum_probs=31.2
Q ss_pred cccccEEEEeeCCCceEEEEEecCeeEEeecCCceeeecCCCCCCc--CCCCCChhhHHhhhcCCccc
Q 011695 213 AESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAH--TAKGPVRPLRRALQGLDPRT 278 (479)
Q Consensus 213 ~E~GgFVlWQm~Pd~W~vELvVgG~KV~AGsDGkvaWRhTPw~gsH--AakGp~RPLRR~lQGLDPr~ 278 (479)
-+.+||+||.|.-+. |+-.| |....- +..=-+..|.-+|+|+|++.
T Consensus 53 wd~~G~~L~~KRLe~-----------------G~F~w---P~~~~~~~~~~lt~~qL~~Ll~Gi~~~~ 100 (107)
T PF05717_consen 53 WDGDGFWLYYKRLER-----------------GRFKW---PRDSEEDGAVELTWEQLSWLLEGIDWRR 100 (107)
T ss_pred ccCCceEEeeeeecC-----------------CEEec---CcccccCceEEECHHHHHHHHcCCCccc
Confidence 477899999998775 45555 443332 22234556899999999974
No 10
>PRK02939 lipoprotein; Reviewed
Probab=22.82 E-value=1.7e+02 Score=29.69 Aligned_cols=67 Identities=13% Similarity=0.199 Sum_probs=40.6
Q ss_pred hcceeeeeeeeeccccceeccCCCccccccccEEEEee---CCCce----------------EEEEEecC-eeEEeecCC
Q 011695 186 AMGKVRMVASEFETAARTVKNRNATRCAESGGFVLWQM---NPDMW----------------YVELAVGG-SKVHAGCNG 245 (479)
Q Consensus 186 A~GkVrM~~sE~~~~~~~v~~~g~~~~~E~GgFVlWQm---~Pd~W----------------~vELvVgG-~KV~AGsDG 245 (479)
..|.||...+-.-...+.+...-...-++.|||.-..+ .=+.| -++|.++| |-+..=-||
T Consensus 42 lrG~VK~~tqt~~ne~g~v~~~v~~~~~~eGCfdtl~~~~~~~n~~l~lvr~~n~lid~~t~~k~~~l~~kCql~~~~dg 121 (236)
T PRK02939 42 LRGPVKDFTQTLMDEQGEVTKRVSGTLSEEGCFDTLELLDLENNTGLALVLDANYYRDAETLEKRVRLQGKCQLAELPSA 121 (236)
T ss_pred ccCcceeeEEEEEcCCCcEEEEEEEEEcCCCceeeeEecccccccceEEEEecCeeeccccCeeEEEECCceEEEEccCC
Confidence 35777777544432222222221223457799876543 21111 47889988 888888899
Q ss_pred ceeeecC
Q 011695 246 KLVWRHT 252 (479)
Q Consensus 246 kvaWRhT 252 (479)
++.|++.
T Consensus 122 ~l~~~~n 128 (236)
T PRK02939 122 GVSWETD 128 (236)
T ss_pred cEEEEEC
Confidence 9999965
No 11
>PF07161 DUF1396: Protein of unknown function (DUF1396); InterPro: IPR009830 This entry consists of several lipoproteins from Mycobacterium species, collectively known as the LppX/LprAFG family. The best characterised of these is LprG (P0A5I8 from SWISSPROT) from Mycobacterium tuberculosis which is an immunogenic 27 kDa membrane-associated lipoprotein []. Expression of the lprG gene encoding this protein is essential for the growth of M. tuberculosis in immunocompetent mice []. Purification of LprG showed that it inhibits MHC-II antigen processing in primary human macrophages, providing a mechanism to avoid the host MHC-II-restricted CD4+ T cell response which is considered essential for control of M. tuberculosis infection []. LppX is a secreted antigen which may be a good target for vaccine design [], while LprF is a membrane lipoprotein involved in the kdp signal transduction pathway, thought to be the primary response to osmotic stress [].; PDB: 2BYO_A 3MHA_B 3MH8_B 3MH9_A.
Probab=22.66 E-value=87 Score=30.03 Aligned_cols=85 Identities=20% Similarity=0.231 Sum_probs=52.9
Q ss_pred eeCCCceEEEEEecCeeEEeecCCceeeecCCCCCCcCCCCCChhhHHhhhcCCccc-cccc---ccceeeeeeeeecCc
Q 011695 222 QMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRT-TASM---FADARCIGEKKINGE 297 (479)
Q Consensus 222 Qm~Pd~W~vELvVgG~KV~AGsDGkvaWRhTPw~gsHAakGp~RPLRR~lQGLDPr~-tA~l---F~~A~ciGEK~I~Ge 297 (479)
++....--+|.||-|.++-+--.. -.| +-.-.+.+...|-+ + |||-. .++| |.|.+..|+++|||.
T Consensus 56 ~~~g~~~~~~fVv~d~~ly~~~~~-~~w-----~~~~~a~~~ydps~-l---ldP~~Gl~~lL~~~~d~k~~G~E~vdG~ 125 (192)
T PF07161_consen 56 QLGGQDVDVEFVVVDGTLYAKLPF-GGW-----QDFGPAADIYDPSA-L---LDPEKGLANLLASFTDPKTEGRETVDGV 125 (192)
T ss_dssp EETTCEEEEEEEEETTEEEEEECT-TEE-----EEEEEHGHCHHHHC-G---G-TTTSHHHHCCTEEEEEEEEEEEETTE
T ss_pred EeCCceeeEEEEEECCEEEEecCC-CCc-----eEcCcccccCChhH-h---cCHhHhHHHHHHhcCCcceeceEEECCE
Confidence 444445588888877777665442 123 32222222222211 1 67765 6666 678899999999999
Q ss_pred eeEEEEeecChhhhhccCC
Q 011695 298 DCFILKLCADPQTLKARSE 316 (479)
Q Consensus 298 DCFvLKl~ad~~~L~arS~ 316 (479)
+-+.+.=+.+.+.+.+=..
T Consensus 126 ~t~~vtGtv~~~~v~~l~p 144 (192)
T PF07161_consen 126 ETYHVTGTVPADAVAALVP 144 (192)
T ss_dssp EEEEEEEEE-HHHHHHH-C
T ss_pred EEEEEEEEeCHHHHHHhCC
Confidence 9999999999888776443
No 12
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=22.08 E-value=74 Score=34.12 Aligned_cols=55 Identities=25% Similarity=0.361 Sum_probs=34.6
Q ss_pred CCCccccccccEEEEeeC-------------------CCceEEEEEecC-eeEEeecCCceeeecCCCCCCcCCC
Q 011695 207 RNATRCAESGGFVLWQMN-------------------PDMWYVELAVGG-SKVHAGCNGKLVWRHTPWLGAHTAK 261 (479)
Q Consensus 207 ~g~~~~~E~GgFVlWQm~-------------------Pd~W~vELvVgG-~KV~AGsDGkvaWRhTPw~gsHAak 261 (479)
.|+...+--||||.|+|. ||+-++=|||++ +|-..-.-|--.=..|+-+--|-.+
T Consensus 155 SGSACRSl~GG~V~W~mG~~~DGsDsvAvq~~p~~~W~el~ililVvs~~~K~t~ST~GM~~sveTS~L~qhRi~ 229 (395)
T KOG2833|consen 155 SGSACRSLYGGFVAWEMGELDDGSDSVAVQIAPSSHWPELRILILVVSDAKKKTGSTEGMRRSVETSQLLQHRIE 229 (395)
T ss_pred CchhhhhhhcceeEeecccccCCCceeEEEeccccCCCceEEEEEEeccccccccccHHHHHHHHHhHHHHHHHH
Confidence 344445688999999773 678889999966 6655555554444444444444333
No 13
>PF03043 Herpes_UL87: Herpesvirus UL87 family; InterPro: IPR004285 Members of this family are functionally uncharacterised.
Probab=21.60 E-value=25 Score=39.07 Aligned_cols=69 Identities=16% Similarity=0.344 Sum_probs=50.1
Q ss_pred eeceeEEeeecCCCCceEEEeeeeeccccccccCceeeeccCcceEEEEE-eccccccccccceeeeeeeeeeecc
Q 011695 340 MEDSHLTRIQSNGGDAVYWETTINSFLDDYRPVEGIMIAHSGRSVVTLFR-FGEVAMSHSKTKMEEAWTIEEVAFN 414 (479)
Q Consensus 340 lEDS~LtRiqs~g~~~vyWETtieS~i~DYR~VdGV~IAH~G~t~vtl~R-fGe~~~~h~~TrMEE~WtIeeV~FN 414 (479)
|||-+++| .|-..|||-|.--|+|+. -||+|+.-=--.++|+.| +|+...++-...+--.=++.++.+|
T Consensus 337 LENQ~vVR---s~R~~VfWTTNFPs~VS~---~~g~Nv~WFKAaTa~i~kv~G~~L~~~~~~E~~~i~~~~~~~i~ 406 (538)
T PF03043_consen 337 LENQSVVR---SGRSDVFWTTNFPSMVST---KDGVNVSWFKAATATISKVSGRDLENQLLKELSPILTHPDARID 406 (538)
T ss_pred ccchhhhh---ccCCceEEecCCCeEEEc---CCCceeeeeeeccEeecccccHHHHHHHHHHHHHHhCCcceeec
Confidence 89999988 556799999999998884 578888766556777777 5776666655444444555666665
No 14
>cd06911 VirB9_CagX_TrbG VirB9/CagX/TrbG, a component of the type IV secretion system. VirB9 is a component of the type IV secretion system, which is employed by pathogenic bacteria to export virulence proteins directly from the bacterial cytoplasm into the host cell. Unlike the more common type III secretion system, type IV systems evolved from the conjugative apparatus, which is used to transfer DNA between cells. VirB9 was initially identified as an essential virulence gene on the Agrobacterium tumefaciens Ti plasmid. In the pilin-like conjugative structure, VirB9 appears to form a stabilizing complex in the outer membrane, by interacting with the lipoprotein VirB7. The heterodimer has been shown to stabilize other components of the type IV system. This alignment model spans the C-terminal domain of VirB9. CagX is a component of the Helicobacter pylori cag PAI-encoded type IV secretion system. Some other members of this family are involved in conjugal transfer to T-DNA of plant cells
Probab=20.18 E-value=2.6e+02 Score=23.08 Aligned_cols=52 Identities=17% Similarity=0.241 Sum_probs=34.6
Q ss_pred eeceeEEeeecCC---CCceEEEeee-eeccccccccCceeeeccCcceEEEEEecc
Q 011695 340 MEDSHLTRIQSNG---GDAVYWETTI-NSFLDDYRPVEGIMIAHSGRSVVTLFRFGE 392 (479)
Q Consensus 340 lEDS~LtRiqs~g---~~~vyWETti-eS~i~DYR~VdGV~IAH~G~t~vtl~RfGe 392 (479)
+.|-..|-|+-+. -.++|+...- ...+-+||-.++.+|-|.-... .+.|.|.
T Consensus 22 ~DDG~~Tyi~f~~~~~~Pavf~~~~~g~~~lvn~~~~~~~~vV~~v~~~-~~Lr~G~ 77 (86)
T cd06911 22 FDDGRFTYFQFPPNAELPAIFVVDPDGKESLVNYRVEGNYIVVDGVAPK-LVLRLGD 77 (86)
T ss_pred EECCEEEEEECCCCCCCCcEEEECCCCCEEeceeEEECCEEEEeccCCc-EEEEeCC
Confidence 4566677777653 2489998874 4456679999999999985332 3345554
No 15
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=20.05 E-value=27 Score=33.49 Aligned_cols=30 Identities=40% Similarity=0.698 Sum_probs=22.4
Q ss_pred EEeeeeeccccccccCceeeeccCc-ceEEEEEec
Q 011695 358 WETTINSFLDDYRPVEGIMIAHSGR-SVVTLFRFG 391 (479)
Q Consensus 358 WETtieS~i~DYR~VdGV~IAH~G~-t~vtl~RfG 391 (479)
-++.|.|.|.||| |.|+|+|- |..+++|-+
T Consensus 55 ~~~kiQsli~dar----IVISHaG~GSIL~~~rl~ 85 (161)
T COG5017 55 KEEKIQSLIHDAR----IVISHAGEGSILLLLRLD 85 (161)
T ss_pred hHHHHHHHhhcce----EEEeccCcchHHHHhhcC
Confidence 3788999999999 89999985 333444444
Done!