Query 011695
Match_columns 479
No_of_seqs 95 out of 97
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 13:27:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011695.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011695hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2byoa1 b.125.1.3 (A:20-207) P 47.9 9.1 0.00066 32.7 4.6 77 229-317 63-143 (188)
2 d1btea_ g.7.1.3 (A:) Type II a 43.1 5.6 0.00041 31.8 2.3 22 214-237 32-53 (96)
3 d2i74a1 b.18.1.29 (A:472-651) 29.9 19 0.0014 31.3 3.8 39 214-252 102-156 (180)
4 d2h62d1 g.7.1.3 (D:8-98) Type 29.2 13 0.00094 29.4 2.3 22 214-237 31-52 (91)
5 d1ypra_ d.110.1.1 (A:) Profili 26.1 19 0.0013 28.6 2.8 64 240-317 20-83 (125)
6 d1tdja2 d.58.18.2 (A:336-423) 14.3 33 0.0024 26.2 1.7 21 262-283 10-32 (88)
7 d1acfa_ d.110.1.1 (A:) Profili 13.4 56 0.004 25.6 2.9 53 239-305 20-73 (125)
8 d1fi4a1 d.14.1.5 (A:3-190) Mev 13.3 37 0.0027 29.1 1.9 16 210-225 154-169 (188)
9 d1xl4a1 b.1.18.16 (A:139-299) 12.3 58 0.0042 26.8 2.8 25 282-308 5-29 (161)
10 d3ctaa2 b.43.5.2 (A:90-220) CT 11.3 79 0.0058 26.0 3.3 67 252-325 37-111 (131)
No 1
>d2byoa1 b.125.1.3 (A:20-207) Putative lipoprotein LppX {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=47.90 E-value=9.1 Score=32.72 Aligned_cols=77 Identities=16% Similarity=0.235 Sum_probs=48.9
Q ss_pred EEEEEecCeeEEeecCCceeeecCCCCCCcCCCCCChhhHHhhhcCCccc-cccc---ccceeeeeeeeecCceeEEEEe
Q 011695 229 YVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRT-TASM---FADARCIGEKKINGEDCFILKL 304 (479)
Q Consensus 229 ~vELvVgG~KV~AGsDGkvaWRhTPw~gsHAakGp~RPLRR~lQGLDPr~-tA~l---F~~A~ciGEK~I~GeDCFvLKl 304 (479)
-+|+++-|.++-+..+++ |..-+- .+..-| -.=|||-. .++| +.|+..+|+++|||..|..+.-
T Consensus 63 ~~~~v~~d~~~Y~~~~~~--w~~~~~------~~~~d~----~~~ldP~~gl~~lLa~~~d~~~~G~EtvdG~~t~~~tg 130 (188)
T d2byoa1 63 GVPFRVQGDNISVKLFDD--WSNLGS------ISELST----SRVLDPAAGVTQLLSGVTNLQAQGTEVIDGISTTKITG 130 (188)
T ss_dssp EEEEEEETTEEEEEETTE--EEEEEE------HHHHHH----HTC-----CCCCCSTTCEEEEEEEEEEETTEEEEEEEE
T ss_pred cEEEEEECCEEEEcCCCc--hhhcCc------cccCCH----hhhcChhHhHHHHhhhcCCceeccceEECCEEEEEEEE
Confidence 388888888888887653 432110 111122 12357766 4555 6788999999999999999999
Q ss_pred ecChhhhhccCCC
Q 011695 305 CADPQTLKARSEG 317 (479)
Q Consensus 305 ~ad~~~L~arS~g 317 (479)
+.+.+.+..=..+
T Consensus 131 tv~~~~~~~~~~~ 143 (188)
T d2byoa1 131 TIPASSVKMLDPG 143 (188)
T ss_dssp EECHHHHHHHCTT
T ss_pred EeCHHHHHhhccc
Confidence 9988877665443
No 2
>d1btea_ g.7.1.3 (A:) Type II activin receptor {Mouse (Mus musculus) [TaxId: 10090]}
Probab=43.13 E-value=5.6 Score=31.78 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=17.7
Q ss_pred ccccEEEEeeCCCceEEEEEecCe
Q 011695 214 ESGGFVLWQMNPDMWYVELAVGGS 237 (479)
Q Consensus 214 E~GgFVlWQm~Pd~W~vELvVgG~ 237 (479)
..+||+||+..++. ++|++.|+
T Consensus 32 ~~~Cf~lW~~~~g~--~~i~~qGC 53 (96)
T d1btea_ 32 RRHCFATWKNISGS--IEIVKQGC 53 (96)
T ss_dssp CCEEEEEEEEETTE--EEEEEEEE
T ss_pred cCceEEecccCCCC--EEEEEecC
Confidence 46899999999987 66777776
No 3
>d2i74a1 b.18.1.29 (A:472-651) Peptide:N-glycanase, PNGase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.92 E-value=19 Score=31.26 Aligned_cols=39 Identities=26% Similarity=0.520 Sum_probs=27.0
Q ss_pred ccccEEEEeeCCCceEEEEEec----------C---eeE---EeecCCceeeecC
Q 011695 214 ESGGFVLWQMNPDMWYVELAVG----------G---SKV---HAGCNGKLVWRHT 252 (479)
Q Consensus 214 E~GgFVlWQm~Pd~W~vELvVg----------G---~KV---~AGsDGkvaWRhT 252 (479)
..+|=|.|+..-+.=|+++.-+ | -.+ ..|.||.+||.|+
T Consensus 102 f~~G~v~~~~~~~~~~~~i~~d~~~~~~~~~~ga~~~~i~a~LsGG~g~~aWQHa 156 (180)
T d2i74a1 102 FESGSVRWKLRSETAQVNLLGDKNLRSYNDFSGATEVTLEAELSRGDGDVAWQHT 156 (180)
T ss_dssp CTTCEEEEEEECSSCEEEECCBSCCEEECTTTTCSEEEEEEEEECCCGGGGGGSE
T ss_pred ECCCEEEEEEEcCCceEEecCCCceeEecCcCCCeEEEEEEEEeCCCccccchhh
Confidence 3477788888777777776532 2 112 4688999999986
No 4
>d2h62d1 g.7.1.3 (D:8-98) Type II activin receptor {Mouse (Mus musculus), isoform IIB [TaxId: 10090]}
Probab=29.22 E-value=13 Score=29.45 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=18.0
Q ss_pred ccccEEEEeeCCCceEEEEEecCe
Q 011695 214 ESGGFVLWQMNPDMWYVELAVGGS 237 (479)
Q Consensus 214 E~GgFVlWQm~Pd~W~vELvVgG~ 237 (479)
...||+||+..++- ++|+..|+
T Consensus 31 ~~~Cy~lW~~~~~~--i~i~~qGC 52 (91)
T d2h62d1 31 RLHCYASWRNSSGT--IELVKKGC 52 (91)
T ss_dssp CEEEEEEEEEETTE--EEEEEEEE
T ss_pred CCccEEEeecCCCC--EEEEEecc
Confidence 45799999999876 67777887
No 5
>d1ypra_ d.110.1.1 (A:) Profilin (actin-binding protein) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.13 E-value=19 Score=28.58 Aligned_cols=64 Identities=17% Similarity=0.319 Sum_probs=38.7
Q ss_pred EeecCCceeeecCCCCCCcCCCCCChhhHHhhhcCCcccccccccceeeeeeeeecCceeEEEEeecChhhhhccCCC
Q 011695 240 HAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTASMFADARCIGEKKINGEDCFILKLCADPQTLKARSEG 317 (479)
Q Consensus 240 ~AGsDGkvaWRhTPw~gsHAakGp~RPLRR~lQGLDPr~tA~lF~~A~ciGEK~I~GeDCFvLKl~ad~~~L~arS~g 317 (479)
+.|-||..+|-.||-. .--+..+..++..++..+ .++.+- =.++|+.|++|+-+ +..+.++.+.
T Consensus 20 I~g~dg~svwA~S~gf-----~~~~~E~~~i~~~f~~~~--~~~~~G-----i~i~G~KY~~~~~d--~~~i~~kk~~ 83 (125)
T d1ypra_ 20 IYSRAGDAVWATSGGL-----SLQPNEIGEIVQGFDNPA--GLQSNG-----LHIQGQKFMLLRAD--DRSIYGRHDA 83 (125)
T ss_dssp EEETTSCCEEEEESCC-----CCCHHHHHHHHHHTTCTH--HHHHHC-----EEETTEEEEEEEEC--SSEEEEEETT
T ss_pred EEeCCCCeeEEECCCC-----CCCHHHHHHHHHHhcCcc--hhccCC-----EEEcCeEEEEEecC--CCeEEEEeCC
Confidence 6788998889988732 134455777776553321 122221 25789999999854 3455555443
No 6
>d1tdja2 d.58.18.2 (A:336-423) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=14.29 E-value=33 Score=26.21 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=16.8
Q ss_pred CCChh--hHHhhhcCCcccccccc
Q 011695 262 GPVRP--LRRALQGLDPRTTASMF 283 (479)
Q Consensus 262 Gp~RP--LRR~lQGLDPr~tA~lF 283 (479)
=|+|| |++|++-|.|+.+ +.|
T Consensus 10 iPErpGaf~~F~~~lg~~nI-TeF 32 (88)
T d1tdja2 10 IPEEKGSFLKFCQLLGGRSV-TEF 32 (88)
T ss_dssp CCBSSSCSHHHHHTTSSSEE-EEE
T ss_pred cCCCccHHHHHHHhcCcCce-EEE
Confidence 48888 9999999999844 444
No 7
>d1acfa_ d.110.1.1 (A:) Profilin (actin-binding protein) {Acanthamoeba castellanii [TaxId: 5755]}
Probab=13.42 E-value=56 Score=25.62 Aligned_cols=53 Identities=13% Similarity=0.191 Sum_probs=30.5
Q ss_pred EEeecCCceeeecCCCCCCcCCCCCChhhHHhhhcC-CcccccccccceeeeeeeeecCceeEEEEee
Q 011695 239 VHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGL-DPRTTASMFADARCIGEKKINGEDCFILKLC 305 (479)
Q Consensus 239 V~AGsDGkvaWRhTPw~gsHAakGp~RPLRR~lQGL-DPr~tA~lF~~A~ciGEK~I~GeDCFvLKl~ 305 (479)
.+.|-||.+ |-.||=.. -.+..+..++..+ ||. .++.+ | =.++|+.|++|+-+
T Consensus 20 aI~g~DG~v-wA~S~gf~-----~~~~E~~~i~~~f~d~~---~~~~~----G-i~i~G~KY~~~~~d 73 (125)
T d1acfa_ 20 AILGLDGNT-WATSAGFA-----VTPAQGTTLAGAFNNAD---AIRAG----G-FDLAGVHYVTLRAD 73 (125)
T ss_dssp EEEETTSCE-EEECTTCC-----CCHHHHHHHHHHHHCCH---HHHHH----C-EEETTEEEEEEEES
T ss_pred EEEcCCCCE-EEECCCCC-----CCHHHHHHHHHhccChh---hhhhC----C-EEECCeEEEEEecC
Confidence 456788874 87776331 2444566666544 332 22222 1 26789999999854
No 8
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.32 E-value=37 Score=29.15 Aligned_cols=16 Identities=31% Similarity=0.671 Sum_probs=12.0
Q ss_pred ccccccccEEEEeeCC
Q 011695 210 TRCAESGGFVLWQMNP 225 (479)
Q Consensus 210 ~~~~E~GgFVlWQm~P 225 (479)
+-.+--||||+|++.+
T Consensus 154 AcRSi~Gg~v~W~~g~ 169 (188)
T d1fi4a1 154 ACRSLFGGYVAWEMGK 169 (188)
T ss_dssp GGGGGSSSEEEEECCS
T ss_pred hhhhhcCCeeEeccCC
Confidence 3346779999999764
No 9
>d1xl4a1 b.1.18.16 (A:139-299) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}
Probab=12.26 E-value=58 Score=26.79 Aligned_cols=25 Identities=16% Similarity=0.454 Sum_probs=21.1
Q ss_pred cccceeeeeeeeecCceeEEEEeecCh
Q 011695 282 MFADARCIGEKKINGEDCFILKLCADP 308 (479)
Q Consensus 282 lF~~A~ciGEK~I~GeDCFvLKl~ad~ 308 (479)
+|++-.||.. .||..|+..+|..-+
T Consensus 5 ~FS~~Avi~~--~dG~~~LmfRv~n~R 29 (161)
T d1xl4a1 5 LFSSRMVISD--FEGKPTLMMRLANLR 29 (161)
T ss_dssp EECSCEEEEE--ETTEEEEEEEEEECS
T ss_pred EeeCcEEEEE--ECCEEEEEEEEecCC
Confidence 4999999965 699999999997643
No 10
>d3ctaa2 b.43.5.2 (A:90-220) CTP-dependent riboflavin kinase, Rfk {Thermoplasma acidophilum [TaxId: 2303]}
Probab=11.34 E-value=79 Score=25.96 Aligned_cols=67 Identities=22% Similarity=0.363 Sum_probs=40.8
Q ss_pred CCCCCCcCCC--CCChhhHHhhhcCCccccccc------ccceeeeeeeeecCceeEEEEeecChhhhhccCCCCceEEE
Q 011695 252 TPWLGAHTAK--GPVRPLRRALQGLDPRTTASM------FADARCIGEKKINGEDCFILKLCADPQTLKARSEGPAEIIR 323 (479)
Q Consensus 252 TPw~gsHAak--Gp~RPLRR~lQGLDPr~tA~l------F~~A~ciGEK~I~GeDCFvLKl~ad~~~L~arS~g~aEiIr 323 (479)
+||-|.=--+ +..-+.++.|..+++.-+-.. |-.|.|.=-+ |++.+|.||..+-... ..-+|||-
T Consensus 37 ~P~PGTLNv~l~~~~~~~~~~l~~~~~i~I~gf~~~~rtfG~v~~~~~~-i~~i~~aiv~P~rT~h------~dvvEiIa 109 (131)
T d3ctaa2 37 IPYLGTLNIKVDQASLPELRKIRGFRGIHIEGFKTEDRTFGSVKAFPAK-IQNIPCFVIMPERTVY------TDVIEIIS 109 (131)
T ss_dssp CCCC---EEEECGGGHHHHHHHHHSCCEEECCEEC--CEECCEEEEEEE-ETTEEEEEEEESSCCC------CSEEEEEC
T ss_pred CCCCCcEEEEEcchhhHHHHHhhccCCeEeCCcccCCceEeeEEEEEEE-ECCEeEEEEEccCCCC------CCEEEEEC
Confidence 5666655444 223355777777777655432 7777776554 6889999999876441 24688885
Q ss_pred ee
Q 011695 324 HV 325 (479)
Q Consensus 324 H~ 325 (479)
=+
T Consensus 110 p~ 111 (131)
T d3ctaa2 110 DK 111 (131)
T ss_dssp C-
T ss_pred Ch
Confidence 43
Done!