Citrus Sinensis ID: 011696

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------48
Protein Sequence
MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPSNNGIGTAGTVVIAVAVGIIAFSLIGLVVWCLRRRKKEVSGLNGVYIMPSPLGSSSTTDSSYIKTQSSAPLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEHHHHHHHHHHHHHHHEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEHHHHHHHHcccccccccccccccEEEEEEcccccEEEEEEEccccccHHHHHHHHHHHHHHccccccccEEEEEEcccEEEEEEEEcccccccHHcccccccccccccccccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHEHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcHHHHHHHHccccHcccccccccccEEEEEcccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHEEEcccccEEEEEEEcccccHHHHHcccHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
msapspgppaansssppppvsnpptisppppvsnppksspppppvskppttspppsppasnpptsssppasspptsspppasnpptsspppsppasspptisppppvsnpptrsppppsstpppnsppsppsdppanspppsnppsnlpppppssveppkrsppsvppqnpppppsssppknsppapiavppsnvpppptqtpptpaspiaprpsnsspnsppppstkrlspppgipvpstentpgngtnpsspesssspsnngigtAGTVVIAVAVGIIAFSLIGLVVWCLRRRKKevsglngvyimpsplgsssttdssyiktqssapligsgpgsdfvnspqdpgglghsrsmfTYEELVKAtdgfadqnllgeggfgsvykgylpdgrEVAIKQLKigggqgereFKAEVEIISRIHHRHLVSLVGycisddrrlliydyvpnntlyfHLHGKwqlgfdirnhnnglliltvlpl
Flexible Loop (DISEMBL)
msapspgppaanssspppPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPSNNGIGTAGTVVIAVAVGIIAFSLIGLVVWCLRRRKKEvsglngvyimpsplgsssTTDSSYIKTQSSAPLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLkigggqgerEFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL
Low Complexity Region (SEG)
MsapspgppaansssppppvsnpptisppppvsnppksspppppvskppttspppsppasnpptsssppasspptsspppasnpptsspppsppasspptisppppvsnpptrsppppsstpppnsppsppsdppanspppsnppsnlpppppssveppkrsppsvppqnpppppsssppknsppapiavppsnvpppptqtpptpaspiaprpsnsspnsppppstkrlspppGIPVPSTENTpgngtnpsspesssspsnngigtagtvviavavgiiaFSLIGLVVWCLRRRKKEVSGLNGVYIMPSPLGsssttdssYIKTQSSAPLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL
Disordered region (IsUnstruct)
************************************************************************************************************************************************************************************************************************************************************************IGTAGTVVIAVAVGIIAFSLIGLVVWCLRRRKKEVSGLNGVYIM***********************************************MFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVL**
Disordered Region (DISOPRED)
******G*********************************************************************************************************************************************************************************************************************************************************************GTVVIAVAVGIIAFSLIGLVVWCL***************************************************************MFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAI**************KAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL
Disordered Region (DISEMBL)
*****************************************************************************************************************************************************************************************APIAVPPSNV*************************************PPGIPVPST*********************NGIGTAGTVVIAVAVGIIAFSLIGLVVWCLRRRKKEVSGLNGVYIMPSPL***********KTQSSAPLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL
Disordered Region (DISPRO)
************************************************************************************************************************TPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTEN**********************GTAGTVVIAVAVGIIAFSLIGLVVWCLRRRKKEV****************************************************HSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPSNNGIGTAGTVVIAVAVGIIAFSLIGLVVWCLRRRKKEVSGLNGVYIMPSPLGSSSTTDSSYIKTQSSAPLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	479	2.2.26 [Sep-21-2011]
Q9SX31	708	Proline-rich receptor-lik	yes	no	0.409	0.276	0.628	7e-76
Q9C660	762	Proline-rich receptor-lik	no	no	0.405	0.254	0.615	1e-72
Q9FFW5	681	Proline-rich receptor-lik	no	no	0.419	0.295	0.527	2e-56
Q9ZUE0	720	Proline-rich receptor-lik	no	no	0.388	0.258	0.467	2e-49
Q9CAL8	710	Proline-rich receptor-lik	no	no	0.375	0.253	0.466	4e-49
Q9LV48	652	Proline-rich receptor-lik	no	no	0.225	0.165	0.712	2e-46
Q9LK03	717	Proline-rich receptor-lik	no	no	0.227	0.152	0.688	7e-45
Q9ZNQ8	633	Proline-rich receptor-lik	no	no	0.225	0.170	0.685	8e-45
Q1PEM5	513	Proline-rich receptor-lik	no	no	0.240	0.224	0.636	8e-43
Q8GX23	670	Proline-rich receptor-lik	no	no	0.603	0.431	0.393	1e-42

>sp|Q9SX31|PERK9_ARATH Proline-rich receptor-like protein kinase PERK9 OS=Arabidopsis thaliana GN=PERK9 PE=2 SV=1

 Score =  285 bits (728), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 125/199 (62%), Positives = 161/199 (80%), Gaps = 3/199 (1%)

Query: 259 SPSNNGIGTAGTVVIAVAVGIIAFSLIGLVVWCLRRRKKEVSGLNGVYIMPSPLGSSSTT 318
           S +N+GIGT   V I+VAV ++ F+L G+ VWCLR+R+K +S ++G  + PSP+ S++ +
Sbjct: 270 STNNSGIGTGAVVGISVAVALVVFTLFGIFVWCLRKREKRLSAVSGGDVTPSPMSSTARS 329

Query: 319 DSSYIKTQSSAPLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEG 378
           DS++ + QSSAP +G+   S    S    GGLG+S+++F+YEELVKAT+GF+ +NLLGEG
Sbjct: 330 DSAFFRMQSSAP-VGASKRSGSYQSQ--SGGLGNSKALFSYEELVKATNGFSQENLLGEG 386

Query: 379 GFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRR 438
           GFG VYKG LPDGR VA+KQLKIGGGQG+REFKAEVE +SRIHHRHLVS+VG+CIS DRR
Sbjct: 387 GFGCVYKGILPDGRVVAVKQLKIGGGQGDREFKAEVETLSRIHHRHLVSIVGHCISGDRR 446

Query: 439 LLIYDYVPNNTLYFHLHGK 457
           LLIYDYV NN LYFHLHG+
Sbjct: 447 LLIYDYVSNNDLYFHLHGE 465

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9C660|PEK10_ARATH Proline-rich receptor-like protein kinase PERK10 OS=Arabidopsis thaliana GN=PERK10 PE=1 SV=2

 Score =  274 bits (701), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 120/195 (61%), Positives = 155/195 (79%), Gaps = 1/195 (0%)

Query: 270 TVVIAVAVGIIAFSLIGLVVWCLRRRKKEVSGLNGVYIMPSPLGSSS-TTDSSYIKTQSS 328
            V +++ V ++  +LIG+VV CL++RKK +S + G Y+MP+P+ SSS  +DS+ +KTQSS
Sbjct: 330 VVGVSIGVALVLLTLIGVVVCCLKKRKKRLSTIGGGYVMPTPMESSSPRSDSALLKTQSS 389

Query: 329 APLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYL 388
           APL+G+   +    S  +PGG G SR +F+YEELV AT+GF+D+NLLGEGGFG VYKG L
Sbjct: 390 APLVGNRSSNRTYLSQSEPGGFGQSRELFSYEELVIATNGFSDENLLGEGGFGRVYKGVL 449

Query: 389 PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNN 448
           PD R VA+KQLKIGGGQG+REFKAEV+ ISR+HHR+L+S+VGYCIS++RRLLIYDYVPNN
Sbjct: 450 PDERVVAVKQLKIGGGQGDREFKAEVDTISRVHHRNLLSMVGYCISENRRLLIYDYVPNN 509

Query: 449 TLYFHLHGKWQLGFD 463
            LYFHLH     G D
Sbjct: 510 NLYFHLHAAGTPGLD 524

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FFW5|PERK8_ARATH Proline-rich receptor-like protein kinase PERK8 OS=Arabidopsis thaliana GN=PERK8 PE=1 SV=1

 Score =  220 bits (561), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 114/216 (52%), Positives = 142/216 (65%), Gaps = 15/216 (6%)

Query: 246 GNGTNPSSPESSSSPSNNGIGTAGTVV----IAVAVGIIAFSLIGLVVWCLRRRKKEVSG 301
           GN T PSS    S     GI   G +V    +         SL  + VW  R+RK++  G
Sbjct: 219 GNNTLPSSSPGKSEVGTGGIVAIGVIVGLVFL---------SLFVMGVWFTRKRKRKDPG 269

Query: 302 LNGVYIM-PSPLGSSSTTDSSYIKTQSSA-PLIGSGPGSDFVNSPQDPGGLGHSRSMFTY 359
               Y M PS   S   +D     ++SSA P + S  GSD++ +  D G + + RS F+Y
Sbjct: 270 TFVGYTMPPSAYSSPQGSDVVLFNSRSSAPPKMRSHSGSDYMYASSDSGMVSNQRSWFSY 329

Query: 360 EELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISR 419
           +EL + T GF+++NLLGEGGFG VYKG L DGREVA+KQLKIGG QGEREFKAEVEIISR
Sbjct: 330 DELSQVTSGFSEKNLLGEGGFGCVYKGVLSDGREVAVKQLKIGGSQGEREFKAEVEIISR 389

Query: 420 IHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLH 455
           +HHRHLV+LVGYCIS+  RLL+YDYVPNNTL++HLH
Sbjct: 390 VHHRHLVTLVGYCISEQHRLLVYDYVPNNTLHYHLH 425

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZUE0|PEK12_ARATH Proline-rich receptor-like protein kinase PERK12 OS=Arabidopsis thaliana GN=PERK12 PE=2 SV=2

 Score =  197 bits (500), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 101/216 (46%), Positives = 124/216 (57%), Gaps = 30/216 (13%)

Query: 270 TVVIAVAVGIIAFSLIGLVVWCLRRRKKEVSGLNGVYIMPSPLGSSSTTDSSYIKTQSSA 329
           T+V     G    +LIG+V    R++K+ +   N    +P P  + S     ++  Q   
Sbjct: 246 TMVGMAVAGFAIMALIGVVFLVRRKKKRNIDSYNHSQYLPHP--NFSVKSDGFLYGQDPG 303

Query: 330 PLIGSGP-GSDFVNSPQ---------------------------DPGGLGHSRSMFTYEE 361
               SGP GS + NS Q                           D   LG  ++ F+YEE
Sbjct: 304 KGYSSGPNGSMYNNSQQQQSSMGNSYGTAGGGYPHHQMQSSGTPDSAILGSGQTHFSYEE 363

Query: 362 LVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIH 421
           L + T GFA +N+LGEGGFG VYKG L DG+ VA+KQLK G GQG+REFKAEVEIISR+H
Sbjct: 364 LAEITQGFARKNILGEGGFGCVYKGTLQDGKVVAVKQLKAGSGQGDREFKAEVEIISRVH 423

Query: 422 HRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGK 457
           HRHLVSLVGYCISD  RLLIY+YV N TL  HLHGK
Sbjct: 424 HRHLVSLVGYCISDQHRLLIYEYVSNQTLEHHLHGK 459

Regulates the auxin-related MAX (More Axillary Growth) pathway during the shoot branching.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9CAL8|PEK13_ARATH Proline-rich receptor-like protein kinase PERK13 OS=Arabidopsis thaliana GN=PERK13 PE=2 SV=1

 Score =  196 bits (498), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 110/236 (46%), Positives = 134/236 (56%), Gaps = 56/236 (23%)

Query: 260 PSNNGIGTAGTVVIAVAVGIIAFSLIGL--VVWCLRRRKKEVSGLNGVYIMPSPLGSSST 317
           P+N+G G  G  +   A  I  F++I L  VV+ +RR+KK                  + 
Sbjct: 224 PANSGGGYQGKTMAGFA--IAGFAVIALMAVVFLVRRKKKR--------------NIDAY 267

Query: 318 TDSSYI-----KTQSSAPLIG-------SGPGSDFVNSPQD----------PGGLGHSRS 355
           +DS Y+       +S   L G       SGPG    NS Q            GG G++RS
Sbjct: 268 SDSQYLPPSNFSIKSDGFLYGQNPTKGYSGPGG--YNSQQQSNSGNSFGSQRGGGGYTRS 325

Query: 356 --------------MFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKI 401
                          FTYEEL   T+GF+  N+LGEGGFG VYKG L DG+ VA+KQLK+
Sbjct: 326 GSAPDSAVMGSGQTHFTYEELTDITEGFSKHNILGEGGFGCVYKGKLNDGKLVAVKQLKV 385

Query: 402 GGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGK 457
           G GQG+REFKAEVEIISR+HHRHLVSLVGYCI+D  RLLIY+YVPN TL  HLHGK
Sbjct: 386 GSGQGDREFKAEVEIISRVHHRHLVSLVGYCIADSERLLIYEYVPNQTLEHHLHGK 441

Regulates negatively root hairs elongation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LV48|PERK1_ARATH Proline-rich receptor-like protein kinase PERK1 OS=Arabidopsis thaliana GN=PERK1 PE=1 SV=1

 Score =  186 bits (473), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 77/108 (71%), Positives = 95/108 (87%)

Query: 350 LGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGERE 409
           LG S+S FTYEEL +AT+GF++ NLLG+GGFG V+KG LP G+EVA+KQLK G GQGERE
Sbjct: 261 LGFSKSTFTYEELSRATNGFSEANLLGQGGFGYVHKGILPSGKEVAVKQLKAGSGQGERE 320

Query: 410 FKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGK 457
           F+AEVEIISR+HHRHLVSL+GYC++  +RLL+Y++VPNN L FHLHGK
Sbjct: 321 FQAEVEIISRVHHRHLVSLIGYCMAGVQRLLVYEFVPNNNLEFHLHGK 368

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LK03|PERK2_ARATH Proline-rich receptor-like protein kinase PERK2 OS=Arabidopsis thaliana GN=PERK2 PE=2 SV=3

 Score =  182 bits (461), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 75/109 (68%), Positives = 93/109 (85%)

Query: 349 GLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGER 408
           GLG  +  F YEEL +AT+GF++ NLLG+GGFG V+KG L +G+EVA+KQLK G  QGER
Sbjct: 334 GLGIYQGTFNYEELSRATNGFSEANLLGQGGFGYVFKGMLRNGKEVAVKQLKEGSSQGER 393

Query: 409 EFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGK 457
           EF+AEV IISR+HHRHLV+LVGYCI+D +RLL+Y++VPNNTL FHLHGK
Sbjct: 394 EFQAEVGIISRVHHRHLVALVGYCIADAQRLLVYEFVPNNTLEFHLHGK 442

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZNQ8|PERK4_ARATH Proline-rich receptor-like protein kinase PERK4 OS=Arabidopsis thaliana GN=PERK4 PE=1 SV=1

 Score =  181 bits (460), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 74/108 (68%), Positives = 92/108 (85%)

Query: 350 LGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGERE 409
           LG ++S FTY+EL  AT GF D NLLG+GGFG V+KG LP G+EVA+K LK G GQGERE
Sbjct: 265 LGFNKSTFTYQELAAATGGFTDANLLGQGGFGYVHKGVLPSGKEVAVKSLKAGSGQGERE 324

Query: 410 FKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGK 457
           F+AEV+IISR+HHR+LVSLVGYCI+D +R+L+Y++VPN TL +HLHGK
Sbjct: 325 FQAEVDIISRVHHRYLVSLVGYCIADGQRMLVYEFVPNKTLEYHLHGK 372

Required during abscisic acid (ABA)-mediated activation of Ca(2+) channels. Regulates ABA signaling pathways. Modulates the expression of genes related to cell elongation and ABA signaling during root growth.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q1PEM5|PERK3_ARATH Proline-rich receptor-like protein kinase PERK3 OS=Arabidopsis thaliana GN=PERK3 PE=2 SV=2

 Score =  175 bits (443), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 77/121 (63%), Positives = 94/121 (77%), Gaps = 6/121 (4%)

Query: 350 LGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGERE 409
           LG  +S FTY EL +AT+ F++ NLLGEGGFG VYKG L +G EVA+KQLK+G  QGE+E
Sbjct: 164 LGIHQSTFTYGELARATNKFSEANLLGEGGFGFVYKGILNNGNEVAVKQLKVGSAQGEKE 223

Query: 410 FKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGK------WQLGFD 463
           F+AEV IIS+IHHR+LVSLVGYCI+  +RLL+Y++VPNNTL FHLHGK      W L   
Sbjct: 224 FQAEVNIISQIHHRNLVSLVGYCIAGAQRLLVYEFVPNNTLEFHLHGKGRPTMEWSLRLK 283

Query: 464 I 464
           I
Sbjct: 284 I 284

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GX23|PERK5_ARATH Proline-rich receptor-like protein kinase PERK5 OS=Arabidopsis thaliana GN=PERK5 PE=2 SV=1

 Score =  174 bits (441), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 133/338 (39%), Positives = 174/338 (51%), Gaps = 49/338 (14%)

Query: 145 PSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPP 204
           P N  PP P        S P  PP  P  P + SP + +PP+P A               
Sbjct: 87  PENPSPPAPEG------STPVTPPAPPQTPSNQSPERPTPPSPGA-----------NDDR 129

Query: 205 TPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPSNNG 264
              +        S+P+  PP S  R S   G P P    +P   +  S   S + P  N 
Sbjct: 130 NRTNGGNNNRDGSTPS--PPSSGNRTSGDGGSPSPPRSISPPQNSGDSDSSSGNHPQAN- 186

Query: 265 IGTAGTVVIAVAVGIIAFSLIGLVVWCLRRRKKEVS-GLNGV-YIMPSPLGSSSTTDSSY 322
               G ++  +    +   L   +  C  R+KK+ S  +N + Y   +P G + + +  Y
Sbjct: 187 ---IGLIIGVLVGAGLLLLLAVCICICCNRKKKKKSPQVNHMHYYNNNPYGGAPSGNGGY 243

Query: 323 IK---TQSSAPLIG------------SGPGSDFVN--------SPQDPGGLGHSRSMFTY 359
            K         + G            SGP SD  N        SPQ    LGH++S FTY
Sbjct: 244 YKGTPQDHVVNMAGQGGGNWGPQQPVSGPHSDASNLTGRTAIPSPQ-AATLGHNQSTFTY 302

Query: 360 EELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISR 419
           +EL  AT+GFA  NLLG+GGFG V+KG LP G+EVA+K LK+G GQGEREF+AEV+IISR
Sbjct: 303 DELSIATEGFAQSNLLGQGGFGYVHKGVLPSGKEVAVKSLKLGSGQGEREFQAEVDIISR 362

Query: 420 IHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGK 457
           +HHRHLVSLVGYCIS  +RLL+Y+++PNNTL FHLHGK
Sbjct: 363 VHHRHLVSLVGYCISGGQRLLVYEFIPNNTLEFHLHGK 400

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	479
225423802	726	PREDICTED: proline-rich receptor-like pr	0.436	0.287	0.742	1e-84
356494796	724	PREDICTED: proline-rich receptor-like pr	0.434	0.287	0.661	5e-83
255546929	811	ATP binding protein, putative [Ricinus c	0.434	0.256	0.716	9e-83
356502698	747	PREDICTED: proline-rich receptor-like pr	0.394	0.253	0.684	9e-80
297838635	482	hypothetical protein ARALYDRAFT_894642 [	0.423	0.421	0.623	4e-77
15221470	708	protein kinase-like protein [Arabidopsis	0.409	0.276	0.628	4e-74
12321185	760	Pto kinase interactor, putative [Arabido	0.390	0.246	0.632	2e-71
356567172	756	PREDICTED: proline-rich receptor-like pr	0.532	0.337	0.5	7e-71
79352581	762	proline-rich extensin-like receptor kina	0.405	0.254	0.615	7e-71
224101629	685	predicted protein [Populus trichocarpa]	0.430	0.300	0.658	2e-70

>gi|225423802|ref|XP_002277905.1| PREDICTED: proline-rich receptor-like protein kinase PERK9 [Vitis vinifera] gi|297737910|emb|CBI27111.3| unnamed protein product [Vitis vinifera]

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 156/210 (74%), Positives = 179/210 (85%), Gaps = 1/210 (0%)

Query: 249 TNPSSPESS-SSPSNNGIGTAGTVVIAVAVGIIAFSLIGLVVWCLRRRKKEVSGLNGVYI 307
            N S+P  S +S S  GIGT GTV I + +G++   LIG+   CLR+RKK+VSGLNG Y+
Sbjct: 281 VNNSTPNGSPNSTSKGGIGTVGTVAIGLVLGLVVLVLIGVAFLCLRKRKKKVSGLNGGYV 340

Query: 308 MPSPLGSSSTTDSSYIKTQSSAPLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATD 367
           MP+ LGSS  +DSS+ KT SSAPLIGSG GSDFV SP +PGGLG+SRS FTYEELVKAT+
Sbjct: 341 MPATLGSSPRSDSSFTKTLSSAPLIGSGSGSDFVYSPSEPGGLGNSRSWFTYEELVKATN 400

Query: 368 GFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVS 427
           GF+ QNLLGEGGFGSVYKGYLPDGRE+A+KQLKIGG QGEREFKAEVEIISRIHHRHLVS
Sbjct: 401 GFSTQNLLGEGGFGSVYKGYLPDGREIAVKQLKIGGAQGEREFKAEVEIISRIHHRHLVS 460

Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHGK 457
           LVGYCIS+ +RLL+YDYVPNNTLYFHLHG+
Sbjct: 461 LVGYCISESQRLLVYDYVPNNTLYFHLHGE 490

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356494796|ref|XP_003516269.1| PREDICTED: proline-rich receptor-like protein kinase PERK10-like [Glycine max]

 Score =  314 bits (805), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 141/213 (66%), Positives = 169/213 (79%), Gaps = 5/213 (2%)

Query: 247 NGTNPSSPESSSSPSNNGIGTAGTVVIAVAVGIIAFSLIGLVVWCLRRRKKEVSGLNGVY 306
           NGT  SSP+             G V I+V  G +    IG+++WC+RR+K++V  ++G Y
Sbjct: 281 NGTENSSPDGGGDGIG----IGGVVAISVVAGFLLLGFIGVLIWCMRRKKRKVL-VSGDY 335

Query: 307 IMPSPLGSSSTTDSSYIKTQSSAPLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKAT 366
           +MPS L SS  +DSS+ KT SSAPL+ SG GSD V +P +PGGLGHSRS F+YEEL+KAT
Sbjct: 336 VMPSTLASSPESDSSFFKTHSSAPLVQSGSGSDVVYTPSEPGGLGHSRSWFSYEELIKAT 395

Query: 367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLV 426
           +GF+ QNLLGEGGFG VYKG LPDGRE+A+KQLKIGGGQGEREFKAEVEIISRIHHRHLV
Sbjct: 396 NGFSTQNLLGEGGFGCVYKGCLPDGREIAVKQLKIGGGQGEREFKAEVEIISRIHHRHLV 455

Query: 427 SLVGYCISDDRRLLIYDYVPNNTLYFHLHGKWQ 459
           SLVGYCI D++RLL+YDYVPNNTLYFHLHG+ Q
Sbjct: 456 SLVGYCIEDNKRLLVYDYVPNNTLYFHLHGEGQ 488

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546929|ref|XP_002514522.1| ATP binding protein, putative [Ricinus communis] gi|223546126|gb|EEF47628.1| ATP binding protein, putative [Ricinus communis]

 Score =  313 bits (803), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 149/208 (71%), Positives = 175/208 (84%)

Query: 250 NPSSPESSSSPSNNGIGTAGTVVIAVAVGIIAFSLIGLVVWCLRRRKKEVSGLNGVYIMP 309
           N S+PE+S SP + GIGT G V I V VGII  S++GL V C+R+R+KE  GLNG Y+MP
Sbjct: 365 NTSAPENSKSPGDGGIGTGGIVAIGVVVGIIMLSIVGLAVLCMRKRRKEAHGLNGGYVMP 424

Query: 310 SPLGSSSTTDSSYIKTQSSAPLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGF 369
           SPLGSS  TD +  K Q++ PL+GSG  +D+V SP   GGLG+SRS F YEEL+K+T+GF
Sbjct: 425 SPLGSSPRTDLNLSKAQTTIPLMGSGSSTDYVYSPSGSGGLGNSRSWFMYEELLKSTNGF 484

Query: 370 ADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           + QNLLGEGGFGSVYKG LPDGREVA+KQLK+GGGQGEREFKAEVEIISRIHHRHLVSLV
Sbjct: 485 SSQNLLGEGGFGSVYKGCLPDGREVAVKQLKVGGGQGEREFKAEVEIISRIHHRHLVSLV 544

Query: 430 GYCISDDRRLLIYDYVPNNTLYFHLHGK 457
           GYCISD+RRLL+YDYVPNNTL+FHLHG+
Sbjct: 545 GYCISDNRRLLVYDYVPNNTLHFHLHGE 572

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502698|ref|XP_003520154.1| PREDICTED: proline-rich receptor-like protein kinase PERK10-like [Glycine max]

 Score =  303 bits (777), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 130/190 (68%), Positives = 157/190 (82%), Gaps = 1/190 (0%)

Query: 270 TVVIAVAVGIIAFSLIGLVVWCLRRRKKEVSGLNGVYIMPSPLGSSSTTDSSYIKTQSSA 329
            V I+V  G +    IG+++WC+RR+K+++  ++G Y+MPS L SS  +DSS+ KT SSA
Sbjct: 315 VVAISVVAGFLLLGFIGVLIWCMRRQKRKLP-VSGGYVMPSTLASSPESDSSFFKTHSSA 373

Query: 330 PLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLP 389
           PL+ SG GSD V +P DPGGLG+SRS F+YEEL+K T+GF+ QNLLGEGGFG VYKG LP
Sbjct: 374 PLVQSGSGSDVVYTPSDPGGLGNSRSWFSYEELIKVTNGFSTQNLLGEGGFGCVYKGCLP 433

Query: 390 DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNT 449
           DGR++A+KQLKIGGGQGEREFKAEVEII RIHHRHLVSLVGYCI D RRLL+YDYVPNN 
Sbjct: 434 DGRDIAVKQLKIGGGQGEREFKAEVEIIGRIHHRHLVSLVGYCIEDSRRLLVYDYVPNNN 493

Query: 450 LYFHLHGKWQ 459
           LYFHLHG+ Q
Sbjct: 494 LYFHLHGEGQ 503

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838635|ref|XP_002887199.1| hypothetical protein ARALYDRAFT_894642 [Arabidopsis lyrata subsp. lyrata] gi|297333040|gb|EFH63458.1| hypothetical protein ARALYDRAFT_894642 [Arabidopsis lyrata subsp. lyrata]

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 129/207 (62%), Positives = 169/207 (81%), Gaps = 4/207 (1%)

Query: 254 PESSSSPSNNGIGTAGTVVIAVAVGIIAFSLIGLVVWCLRRRKKEVSGLNGVYIMPSPLG 313
           P+SS+S + +GIGT   V I+VAV ++ F+LIG+ VWC+RRR+K +S ++G  + PSP+ 
Sbjct: 96  PDSSNSTNGSGIGTGAVVGISVAVALVVFTLIGIFVWCVRRREKRLSAVSGGDVTPSPMS 155

Query: 314 SSSTTDSSYIKTQSSAPLIG---SGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFA 370
           S++ +DS++ + QSSAP++G   SG    + +  Q  GGLG+S+++F+YEELVKAT+GF+
Sbjct: 156 STARSDSAFFRMQSSAPVVGEKRSGSHQTYFSQSQ-SGGLGNSKALFSYEELVKATNGFS 214

Query: 371 DQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVG 430
            +NLLGEGGFG VYKG LPDGR VA+KQLKIGGGQG+REFKAEVE +SRIHHRHLVS+VG
Sbjct: 215 QENLLGEGGFGCVYKGILPDGRVVAVKQLKIGGGQGDREFKAEVETLSRIHHRHLVSIVG 274

Query: 431 YCISDDRRLLIYDYVPNNTLYFHLHGK 457
           +CIS DRRLLIYDYV NN LYFHLHG+
Sbjct: 275 HCISGDRRLLIYDYVSNNDLYFHLHGE 301

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221470|ref|NP_177036.1| protein kinase-like protein [Arabidopsis thaliana] gi|75337798|sp|Q9SX31.1|PERK9_ARATH RecName: Full=Proline-rich receptor-like protein kinase PERK9; AltName: Full=Proline-rich extensin-like receptor kinase 9; Short=AtPERK9 gi|5734709|gb|AAD49974.1|AC008075_7 Contains PF|00069 Eukaryotic protein kinase domain [Arabidopsis thaliana] gi|14334806|gb|AAK59581.1| putative protein kinase [Arabidopsis thaliana] gi|21280865|gb|AAM44925.1| putative protein kinase [Arabidopsis thaliana] gi|332196707|gb|AEE34828.1| protein kinase-like protein [Arabidopsis thaliana]

 Score =  285 bits (728), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 125/199 (62%), Positives = 161/199 (80%), Gaps = 3/199 (1%)

Query: 259 SPSNNGIGTAGTVVIAVAVGIIAFSLIGLVVWCLRRRKKEVSGLNGVYIMPSPLGSSSTT 318
           S +N+GIGT   V I+VAV ++ F+L G+ VWCLR+R+K +S ++G  + PSP+ S++ +
Sbjct: 270 STNNSGIGTGAVVGISVAVALVVFTLFGIFVWCLRKREKRLSAVSGGDVTPSPMSSTARS 329

Query: 319 DSSYIKTQSSAPLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEG 378
           DS++ + QSSAP +G+   S    S    GGLG+S+++F+YEELVKAT+GF+ +NLLGEG
Sbjct: 330 DSAFFRMQSSAP-VGASKRSGSYQSQ--SGGLGNSKALFSYEELVKATNGFSQENLLGEG 386

Query: 379 GFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRR 438
           GFG VYKG LPDGR VA+KQLKIGGGQG+REFKAEVE +SRIHHRHLVS+VG+CIS DRR
Sbjct: 387 GFGCVYKGILPDGRVVAVKQLKIGGGQGDREFKAEVETLSRIHHRHLVSIVGHCISGDRR 446

Query: 439 LLIYDYVPNNTLYFHLHGK 457
           LLIYDYV NN LYFHLHG+
Sbjct: 447 LLIYDYVSNNDLYFHLHGE 465

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12321185|gb|AAG50687.1|AC079829_20 Pto kinase interactor, putative [Arabidopsis thaliana]

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 119/188 (63%), Positives = 154/188 (81%), Gaps = 1/188 (0%)

Query: 270 TVVIAVAVGIIAFSLIGLVVWCLRRRKKEVSGLNGVYIMPSPLGSSS-TTDSSYIKTQSS 328
            V +++ V ++  +LIG+VV CL++RKK +S + G Y+MP+P+ SSS  +DS+ +KTQSS
Sbjct: 330 VVGVSIGVALVLLTLIGVVVCCLKKRKKRLSTIGGGYVMPTPMESSSPRSDSALLKTQSS 389

Query: 329 APLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYL 388
           APL+G+   +    S  +PGG G SR +F+YEELV AT+GF+D+NLLGEGGFG VYKG L
Sbjct: 390 APLVGNRSSNRTYLSQSEPGGFGQSRELFSYEELVIATNGFSDENLLGEGGFGRVYKGVL 449

Query: 389 PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNN 448
           PD R VA+KQLKIGGGQG+REFKAEV+ ISR+HHR+L+S+VGYCIS++RRLLIYDYVPNN
Sbjct: 450 PDERVVAVKQLKIGGGQGDREFKAEVDTISRVHHRNLLSMVGYCISENRRLLIYDYVPNN 509

Query: 449 TLYFHLHG 456
            LYFHLHG
Sbjct: 510 NLYFHLHG 517

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567172|ref|XP_003551795.1| PREDICTED: proline-rich receptor-like protein kinase PERK8-like [Glycine max]

 Score =  274 bits (701), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 145/290 (50%), Positives = 191/290 (65%), Gaps = 35/290 (12%)

Query: 201 QTPPTPASP--------------------------IAPRPSNSSPNSPPPPSTKRLSPPP 234
           +T P+ ASP                            P  S+   + P PP+ K +   P
Sbjct: 209 KTTPSHASPPSVSETPPKPPSSDVPPPSTLPSTPPSDPSGSSPPASLPDPPTNKTVVGGP 268

Query: 235 GIPVPS------TENTPGNGTNPSSPESSSSPSNN-GIGTAGTVVIAVAVGIIAFSLIGL 287
            + +PS      T     +GTN  S  S+++PS++ G+ T G+V I + VG I  SL+ +
Sbjct: 269 KVSLPSLPTEKPTARPTNDGTNSMS--SNNTPSHSGGLSTGGSVAIGIVVGFIVLSLLVM 326

Query: 288 VVWCLRRRKKEVSGLNGVYIMPSPLGSSSTTDSSYIKTQSSAPLIGSGPGSDFVNSPQDP 347
            VW  +++KK+ +G  G Y  PSP  SS  + + +++ QS A  +GSG GSDFV SP +P
Sbjct: 327 AVWFAQKKKKKGTGSRGSYAAPSPFTSSHNSGTLFLRPQSPANFLGSGSGSDFVYSPSEP 386

Query: 348 GGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGE 407
           GG+  SRS FTYEEL++AT+GF+ QNLLGEGGFG VYKG L DGREVA+KQLKIGGGQGE
Sbjct: 387 GGVSSSRSWFTYEELIQATNGFSAQNLLGEGGFGCVYKGLLIDGREVAVKQLKIGGGQGE 446

Query: 408 REFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGK 457
           REF+AEVEIISR+HHRHLVSLVGYCIS+ +RLL+YDYVPN+TL++HLHG+
Sbjct: 447 REFRAEVEIISRVHHRHLVSLVGYCISEHQRLLVYDYVPNDTLHYHLHGE 496

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79352581|ref|NP_173940.2| proline-rich extensin-like receptor kinase 10 [Arabidopsis thaliana] gi|310947343|sp|Q9C660.2|PEK10_ARATH RecName: Full=Proline-rich receptor-like protein kinase PERK10; AltName: Full=Proline-rich extensin-like receptor kinase 10; Short=AtPERK10 gi|332192534|gb|AEE30655.1| proline-rich extensin-like receptor kinase 10 [Arabidopsis thaliana]

 Score =  274 bits (701), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 120/195 (61%), Positives = 155/195 (79%), Gaps = 1/195 (0%)

Query: 270 TVVIAVAVGIIAFSLIGLVVWCLRRRKKEVSGLNGVYIMPSPLGSSS-TTDSSYIKTQSS 328
            V +++ V ++  +LIG+VV CL++RKK +S + G Y+MP+P+ SSS  +DS+ +KTQSS
Sbjct: 330 VVGVSIGVALVLLTLIGVVVCCLKKRKKRLSTIGGGYVMPTPMESSSPRSDSALLKTQSS 389

Query: 329 APLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYL 388
           APL+G+   +    S  +PGG G SR +F+YEELV AT+GF+D+NLLGEGGFG VYKG L
Sbjct: 390 APLVGNRSSNRTYLSQSEPGGFGQSRELFSYEELVIATNGFSDENLLGEGGFGRVYKGVL 449

Query: 389 PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNN 448
           PD R VA+KQLKIGGGQG+REFKAEV+ ISR+HHR+L+S+VGYCIS++RRLLIYDYVPNN
Sbjct: 450 PDERVVAVKQLKIGGGQGDREFKAEVDTISRVHHRNLLSMVGYCISENRRLLIYDYVPNN 509

Query: 449 TLYFHLHGKWQLGFD 463
            LYFHLH     G D
Sbjct: 510 NLYFHLHAAGTPGLD 524

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101629|ref|XP_002312360.1| predicted protein [Populus trichocarpa] gi|222852180|gb|EEE89727.1| predicted protein [Populus trichocarpa]

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 139/211 (65%), Positives = 165/211 (78%), Gaps = 5/211 (2%)

Query: 247 NGTNPSSPESSSSPSNNGIGTAGTVVIAVAVGIIAFSLIGLVVWCLRRRKKEVSGLNGVY 306
           N T P+SPESS+S  N GIG  G V I  A+GII   L+GL +WC+R+++KE+SGLNGVY
Sbjct: 249 NNTAPNSPESSNSTGNGGIGIGGIVAIGAAIGIIMLILVGLALWCMRKQRKEISGLNGVY 308

Query: 307 IMPSPLGSSSTTDSSYIKTQSSAPLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKAT 366
           +MPS LGSS  +   Y K   +   I S    DF+        + +SR +F +EELVKAT
Sbjct: 309 VMPSSLGSSPRS-GIYFKQHFA---ISSLTCYDFLQQYHSY-SISNSRPLFAFEELVKAT 363

Query: 367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLV 426
           +GF+ QNLLGEGGFG+VYKGYLPDGR+VA+KQLKIGGGQGEREFKAEVEIISRIHHRHLV
Sbjct: 364 NGFSSQNLLGEGGFGTVYKGYLPDGRDVAVKQLKIGGGQGEREFKAEVEIISRIHHRHLV 423

Query: 427 SLVGYCISDDRRLLIYDYVPNNTLYFHLHGK 457
           SLVGYCIS+ RRLL+YDYVPNNTL+FHLHGK
Sbjct: 424 SLVGYCISETRRLLVYDYVPNNTLHFHLHGK 454

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	479
TAIR|locus:2028756	762	PERK10 "proline-rich extensin-	0.377	0.237	0.620	1.5e-58
TAIR|locus:2026925	708	PERK9 "proline-rich extensin-l	0.361	0.244	0.630	1.1e-57
TAIR|locus:2159873	681	PERK8 "proline-rich extensin-l	0.361	0.254	0.577	1.1e-48
TAIR|locus:2046268	633	PERK4 "proline-rich extensin-l	0.258	0.195	0.629	5.9e-43
UNIPROTKB|Q9ARH1	647	Q9ARH1 "Receptor protein kinas	0.267	0.197	0.646	9.5e-43
TAIR|locus:2139474	670	PERK5 "proline-rich extensin-l	0.256	0.183	0.659	1e-41
TAIR|locus:2091722	652	PERK1 "proline-rich extensin-l	0.263	0.193	0.648	1.3e-41
TAIR|locus:2016154	394	AT1G70450 [Arabidopsis thalian	0.279	0.340	0.622	2e-40
TAIR|locus:2026846	710	PERK13 "proline-rich extensin-	0.256	0.173	0.658	1.6e-39
TAIR|locus:2028911	720	PERK12 "proline-rich extensin-	0.233	0.155	0.705	2.9e-38

TAIR|locus:2028756 PERK10 "proline-rich extensin-like receptor kinase 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 113/182 (62%), Positives = 141/182 (77%)

Query:   283 SLIGLVVWCLRRRKKEVSGLNGVYIMPSPLGXXX-XXXXXYIKTQSSAPLIGSGPGSDFV 341
             +LIG+VV CL++RKK +S + G Y+MP+P+           +KTQSSAPL+G+   +   
Sbjct:   343 TLIGVVVCCLKKRKKRLSTIGGGYVMPTPMESSSPRSDSALLKTQSSAPLVGNRSSNRTY 402

Query:   342 NSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKI 401
              S  +PGG G SR +F+YEELV AT+GF+D+NLLGEGGFG VYKG LPD R VA+KQLKI
Sbjct:   403 LSQSEPGGFGQSRELFSYEELVIATNGFSDENLLGEGGFGRVYKGVLPDERVVAVKQLKI 462

Query:   402 GGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGKWQLG 461
             GGGQG+REFKAEV+ ISR+HHR+L+S+VGYCIS++RRLLIYDYVPNN LYFHLH     G
Sbjct:   463 GGGQGDREFKAEVDTISRVHHRNLLSMVGYCISENRRLLIYDYVPNNNLYFHLHAAGTPG 522

Query:   462 FD 463
              D
Sbjct:   523 LD 524

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2026925 PERK9 "proline-rich extensin-like receptor kinase 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 111/176 (63%), Positives = 138/176 (78%)

Query:   282 FSLIGLVVWCLRRRKKEVSGLNGVYIMPSPLGXXXXXXXXYIKTQSSAPLIGSGPGSDFV 341
             F+L G+ VWCLR+R+K +S ++G  + PSP+         + + QSSAP +G+   S   
Sbjct:   293 FTLFGIFVWCLRKREKRLSAVSGGDVTPSPMSSTARSDSAFFRMQSSAP-VGASKRSGSY 351

Query:   342 NSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKI 401
              S    GGLG+S+++F+YEELVKAT+GF+ +NLLGEGGFG VYKG LPDGR VA+KQLKI
Sbjct:   352 QSQS--GGLGNSKALFSYEELVKATNGFSQENLLGEGGFGCVYKGILPDGRVVAVKQLKI 409

Query:   402 GGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGK 457
             GGGQG+REFKAEVE +SRIHHRHLVS+VG+CIS DRRLLIYDYV NN LYFHLHG+
Sbjct:   410 GGGQGDREFKAEVETLSRIHHRHLVSIVGHCISGDRRLLIYDYVSNNDLYFHLHGE 465

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2159873 PERK8 "proline-rich extensin-like receptor kinase 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 101/175 (57%), Positives = 126/175 (72%)

Query:   283 SLIGLVVWCLRRRKKEVSGLNGVYIMP-SPLGXXXXXXXXYIKTQSSAP-LIGSGPGSDF 340
             SL  + VW  R+RK++  G    Y MP S              ++SSAP  + S  GSD+
Sbjct:   251 SLFVMGVWFTRKRKRKDPGTFVGYTMPPSAYSSPQGSDVVLFNSRSSAPPKMRSHSGSDY 310

Query:   341 VNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLK 400
             + +  D G + + RS F+Y+EL + T GF+++NLLGEGGFG VYKG L DGREVA+KQLK
Sbjct:   311 MYASSDSGMVSNQRSWFSYDELSQVTSGFSEKNLLGEGGFGCVYKGVLSDGREVAVKQLK 370

Query:   401 IGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLH 455
             IGG QGEREFKAEVEIISR+HHRHLV+LVGYCIS+  RLL+YDYVPNNTL++HLH
Sbjct:   371 IGGSQGEREFKAEVEIISRVHHRHLVTLVGYCISEQHRLLVYDYVPNNTLHYHLH 425

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005199 "structural constituent of cell wall" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

TAIR|locus:2046268 PERK4 "proline-rich extensin-like receptor kinase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 429 (156.1 bits), Expect = 5.9e-43, Sum P(2) = 5.9e-43
 Identities = 78/124 (62%), Positives = 97/124 (78%)

Query:   334 SGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGRE 393
             SGP    +  P     LG ++S FTY+EL  AT GF D NLLG+GGFG V+KG LP G+E
Sbjct:   249 SGPSRPVLPPPSPALALGFNKSTFTYQELAAATGGFTDANLLGQGGFGYVHKGVLPSGKE 308

Query:   394 VAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFH 453
             VA+K LK G GQGEREF+AEV+IISR+HHR+LVSLVGYCI+D +R+L+Y++VPN TL +H
Sbjct:   309 VAVKSLKAGSGQGEREFQAEVDIISRVHHRYLVSLVGYCIADGQRMLVYEFVPNKTLEYH 368

Query:   454 LHGK 457
             LHGK
Sbjct:   369 LHGK 372

GO:0004672 "protein kinase activity" evidence=IEA;ISS;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0019722 "calcium-mediated signaling" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

UNIPROTKB|Q9ARH1 Q9ARH1 "Receptor protein kinase PERK1" [Brassica napus (taxid:3708)]

 Score = 452 (164.2 bits), Expect = 9.5e-43, P = 9.5e-43
 Identities = 86/133 (64%), Positives = 106/133 (79%)

Query:   330 PLIGSGPGSDF----VNSPQDPG-GLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVY 384
             P + S  GSD+    V  P  PG  LG S+S FTYEEL +AT+GF++ NLLG+GGFG V+
Sbjct:   231 PFMSSSGGSDYSDRPVLPPPSPGLVLGFSKSTFTYEELARATNGFSEANLLGQGGFGYVH 290

Query:   385 KGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY 444
             KG LP G+EVA+KQLK+G GQGEREF+AEVEIISR+HHRHLVSLVGYCI+  +RLL+Y++
Sbjct:   291 KGVLPSGKEVAVKQLKVGSGQGEREFQAEVEIISRVHHRHLVSLVGYCIAGAKRLLVYEF 350

Query:   445 VPNNTLYFHLHGK 457
             VPNN L  HLHG+
Sbjct:   351 VPNNNLELHLHGE 363

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=IDA

TAIR|locus:2139474 PERK5 "proline-rich extensin-like receptor kinase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 445 (161.7 bits), Expect = 1.0e-41, P = 1.0e-41
 Identities = 87/132 (65%), Positives = 104/132 (78%)

Query:   334 SGPGSDFVN--------SPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYK 385
             SGP SD  N        SPQ    LGH++S FTY+EL  AT+GFA  NLLG+GGFG V+K
Sbjct:   270 SGPHSDASNLTGRTAIPSPQ-AATLGHNQSTFTYDELSIATEGFAQSNLLGQGGFGYVHK 328

Query:   386 GYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV 445
             G LP G+EVA+K LK+G GQGEREF+AEV+IISR+HHRHLVSLVGYCIS  +RLL+Y+++
Sbjct:   329 GVLPSGKEVAVKSLKLGSGQGEREFQAEVDIISRVHHRHLVSLVGYCISGGQRLLVYEFI 388

Query:   446 PNNTLYFHLHGK 457
             PNNTL FHLHGK
Sbjct:   389 PNNTLEFHLHGK 400

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

TAIR|locus:2091722 PERK1 "proline-rich extensin-like receptor kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 443 (161.0 bits), Expect = 1.3e-41, P = 1.3e-41
 Identities = 85/131 (64%), Positives = 105/131 (80%)

Query:   332 IGSGPGSDF----VNSPQDPG-GLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKG 386
             + S  GSD+    V  P  PG  LG S+S FTYEEL +AT+GF++ NLLG+GGFG V+KG
Sbjct:   238 MSSSGGSDYSDLPVLPPPSPGLVLGFSKSTFTYEELSRATNGFSEANLLGQGGFGYVHKG 297

Query:   387 YLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP 446
              LP G+EVA+KQLK G GQGEREF+AEVEIISR+HHRHLVSL+GYC++  +RLL+Y++VP
Sbjct:   298 ILPSGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHRHLVSLIGYCMAGVQRLLVYEFVP 357

Query:   447 NNTLYFHLHGK 457
             NN L FHLHGK
Sbjct:   358 NNNLEFHLHGK 368

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;ISS;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009611 "response to wounding" evidence=ISS

GO:0009620 "response to fungus" evidence=ISS

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA

GO:0052546 "cell wall pectin metabolic process" evidence=RCA

TAIR|locus:2016154 AT1G70450 [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 84/135 (62%), Positives = 98/135 (72%)

Query:   323 IKTQSSAPLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGS 382
             +K Q       S P S       D   +G  ++ FTYEEL   T+GF+ QN+LGEGGFG 
Sbjct:     4 LKNQKKKETADS-PSSSPTAPSVDSAVMGSGQTHFTYEELEDITEGFSKQNILGEGGFGC 62

Query:   383 VYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY 442
             VYKG L DG+ VA+KQLK+G GQG+REFKAEVEIISR+HHRHLVSLVGYCI+D  RLLIY
Sbjct:    63 VYKGKLKDGKLVAVKQLKVGSGQGDREFKAEVEIISRVHHRHLVSLVGYCIADSERLLIY 122

Query:   443 DYVPNNTLYFHLHGK 457
             +YVPN TL  HLHGK
Sbjct:   123 EYVPNQTLEHHLHGK 137

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2026846 PERK13 "proline-rich extensin-like receptor kinase 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 1.6e-39, P = 1.6e-39
 Identities = 81/123 (65%), Positives = 94/123 (76%)

Query:   335 GPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREV 394
             G G     S  D   +G  ++ FTYEEL   T+GF+  N+LGEGGFG VYKG L DG+ V
Sbjct:   319 GGGYTRSGSAPDSAVMGSGQTHFTYEELTDITEGFSKHNILGEGGFGCVYKGKLNDGKLV 378

Query:   395 AIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHL 454
             A+KQLK+G GQG+REFKAEVEIISR+HHRHLVSLVGYCI+D  RLLIY+YVPN TL  HL
Sbjct:   379 AVKQLKVGSGQGDREFKAEVEIISRVHHRHLVSLVGYCIADSERLLIYEYVPNQTLEHHL 438

Query:   455 HGK 457
             HGK
Sbjct:   439 HGK 441

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

TAIR|locus:2028911 PERK12 "proline-rich extensin-like receptor kinase 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 2.9e-38, P = 2.9e-38
 Identities = 79/112 (70%), Positives = 90/112 (80%)

Query:   346 DPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ 405
             D   LG  ++ F+YEEL + T GFA +N+LGEGGFG VYKG L DG+ VA+KQLK G GQ
Sbjct:   348 DSAILGSGQTHFSYEELAEITQGFARKNILGEGGFGCVYKGTLQDGKVVAVKQLKAGSGQ 407

Query:   406 GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGK 457
             G+REFKAEVEIISR+HHRHLVSLVGYCISD  RLLIY+YV N TL  HLHGK
Sbjct:   408 GDREFKAEVEIISRVHHRHLVSLVGYCISDQHRLLIYEYVSNQTLEHHLHGK 459

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0032502 "developmental process" evidence=IMP

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.11	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: scaffold_201716.1 annotation not avaliable (482 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	479
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-26
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-24
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	5e-22
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-21
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-21
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-19
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	2e-19
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	8e-19
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-18
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-18
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-18
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-18
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-18
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	3e-18
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	4e-18
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	4e-18
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	5e-18
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-17
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	5e-17
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-17
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-16
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-16
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	2e-16
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	2e-16
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	3e-16
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	7e-16
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	8e-16
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-15
pfam04652	315	pfam04652, DUF605, Vta1 like	3e-15
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	7e-15
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	8e-15
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-14
pfam04652	315	pfam04652, DUF605, Vta1 like	1e-14
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-14
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	3e-14
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	3e-14
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	5e-14
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	6e-14
pfam04652	315	pfam04652, DUF605, Vta1 like	8e-14
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-13
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-13
pfam04652	315	pfam04652, DUF605, Vta1 like	1e-13
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	1e-13
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	1e-13
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	3e-13
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	3e-13
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	3e-13
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	3e-13
pfam04652	315	pfam04652, DUF605, Vta1 like	4e-13
pfam04652	315	pfam04652, DUF605, Vta1 like	4e-13
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	5e-13
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	5e-13
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	6e-13
pfam04652	315	pfam04652, DUF605, Vta1 like	6e-13
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	6e-13
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	9e-13
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	1e-12
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	1e-12
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-12
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	2e-12
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-12
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-12
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	5e-12
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	5e-12
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	7e-12
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	8e-12
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-11
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	1e-11
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	1e-11
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-11
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-11
pfam04652	315	pfam04652, DUF605, Vta1 like	3e-11
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-11
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-11
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	4e-11
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	4e-11
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	5e-11
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	6e-11
pfam04652	315	pfam04652, DUF605, Vta1 like	7e-11
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-11
pfam04652	315	pfam04652, DUF605, Vta1 like	9e-11
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-10
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	1e-10
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	1e-10
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	2e-10
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-10
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-10
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	4e-10
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-10
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	5e-10
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	6e-10
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	7e-10
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	9e-10
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-09
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-09
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	1e-09
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-09
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-09
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-09
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	2e-09
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	2e-09
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	2e-09
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	2e-09
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-09
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-09
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	5e-09
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	5e-09
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	5e-09
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	7e-09
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	7e-09
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	8e-09
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	8e-09
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	8e-09
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	8e-09
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	8e-09
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	9e-09
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	1e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-08
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	1e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-08
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-08
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-08
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-08
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	2e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-08
pfam04652	315	pfam04652, DUF605, Vta1 like	3e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-08
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	4e-08
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	4e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-08
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-08
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-08
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-08
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	4e-08
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	4e-08
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	5e-08
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	5e-08
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	5e-08
pfam04652	315	pfam04652, DUF605, Vta1 like	6e-08
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	6e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	6e-08
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	6e-08
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	6e-08
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	6e-08
pfam03999	619	pfam03999, MAP65_ASE1, Microtubule associated prot	6e-08
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	6e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	7e-08
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	7e-08
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	7e-08
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	8e-08
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	8e-08
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	9e-08
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-07
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-07
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	1e-07
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	1e-07
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	1e-07
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-07
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	2e-07
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	2e-07
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	2e-07
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	2e-07
PRK14949	944	PRK14949, PRK14949, DNA polymerase III subunits ga	2e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-07
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	3e-07
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	3e-07
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	3e-07
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	3e-07
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	3e-07
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	3e-07
pfam04652	315	pfam04652, DUF605, Vta1 like	4e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-07
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	4e-07
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	4e-07
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	4e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	5e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	5e-07
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	5e-07
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	5e-07
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	5e-07
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	5e-07
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	5e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	6e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	6e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	6e-07
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	6e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	7e-07
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	7e-07
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	7e-07
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	7e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	8e-07
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	8e-07
pfam04652	315	pfam04652, DUF605, Vta1 like	9e-07
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	9e-07
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	9e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-06
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	1e-06
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	1e-06
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	1e-06
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	1e-06
pfam11725	1771	pfam11725, AvrE, Pathogenicity factor	1e-06
pfam08580	626	pfam08580, KAR9, Yeast cortical protein KAR9	1e-06
PTZ00395	1560	PTZ00395, PTZ00395, Sec24-related protein; Provisi	1e-06
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-06
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-06
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	2e-06
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	2e-06
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	2e-06
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	2e-06
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	2e-06
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	2e-06
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	2e-06
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	2e-06
pfam06070	777	pfam06070, Herpes_UL32, Herpesvirus large structur	2e-06
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	2e-06
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	3e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-06
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	3e-06
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	3e-06
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	3e-06
PTZ00395	1560	PTZ00395, PTZ00395, Sec24-related protein; Provisi	3e-06
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	3e-06
pfam10428	419	pfam10428, SOG2, RAM signalling pathway protein	3e-06
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	3e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-06
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	4e-06
pfam03999	619	pfam03999, MAP65_ASE1, Microtubule associated prot	4e-06
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	4e-06
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	4e-06
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	4e-06
PTZ00395	1560	PTZ00395, PTZ00395, Sec24-related protein; Provisi	4e-06
PTZ00395	1560	PTZ00395, PTZ00395, Sec24-related protein; Provisi	4e-06
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	4e-06
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	4e-06
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	4e-06
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	4e-06
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	5e-06
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	5e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	6e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	6e-06
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	6e-06
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	6e-06
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	6e-06
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	6e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	7e-06
pfam03999	619	pfam03999, MAP65_ASE1, Microtubule associated prot	7e-06
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	7e-06
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	7e-06
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	8e-06
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	8e-06
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	8e-06
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	8e-06
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	8e-06
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	9e-06
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	9e-06
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	1e-05
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	1e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-05
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	1e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	1e-05
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	1e-05
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	1e-05
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	1e-05
PRK12495	226	PRK12495, PRK12495, hypothetical protein; Provisio	1e-05
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	1e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-05
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	2e-05
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	2e-05
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	2e-05
pfam08580	626	pfam08580, KAR9, Yeast cortical protein KAR9	2e-05
pfam08580	626	pfam08580, KAR9, Yeast cortical protein KAR9	2e-05
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	2e-05
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	2e-05
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	2e-05
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	2e-05
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	2e-05
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	2e-05
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	2e-05
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	2e-05
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	3e-05
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	3e-05
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	3e-05
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	3e-05
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	3e-05
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	3e-05
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	3e-05
PRK08691	709	PRK08691, PRK08691, DNA polymerase III subunits ga	3e-05
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	3e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	4e-05
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	4e-05
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	4e-05
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	4e-05
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	4e-05
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	4e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	5e-05
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	5e-05
PRK14949	944	PRK14949, PRK14949, DNA polymerase III subunits ga	5e-05
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	5e-05
pfam11725	1771	pfam11725, AvrE, Pathogenicity factor	5e-05
pfam08580	626	pfam08580, KAR9, Yeast cortical protein KAR9	5e-05
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	5e-05
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	5e-05
PHA03325	418	PHA03325, PHA03325, nuclear-egress-membrane-like p	5e-05
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	5e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	6e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	6e-05
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	6e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	6e-05
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	6e-05
PRK12495	226	PRK12495, PRK12495, hypothetical protein; Provisio	6e-05
TIGR01628	562	TIGR01628, PABP-1234, polyadenylate binding protei	6e-05
COG5099	777	COG5099, COG5099, RNA-binding protein of the Puf f	6e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-05
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	7e-05
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	7e-05
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	7e-05
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	7e-05
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	7e-05
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	7e-05
TIGR03903	1266	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclas	7e-05
pfam05539	408	pfam05539, Pneumo_att_G, Pneumovirinae attachment	7e-05
PHA03132	580	PHA03132, PHA03132, thymidine kinase; Provisional	7e-05
pfam04484	313	pfam04484, DUF566, Family of unknown function (DUF	7e-05
PRK11901	327	PRK11901, PRK11901, hypothetical protein; Reviewed	7e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	8e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	8e-05
PRK13042	291	PRK13042, PRK13042, superantigen-like protein; Rev	8e-05
cd05091	283	cd05091, PTKc_Ror2, Catalytic domain of the Protei	8e-05
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	9e-05
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	9e-05
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	9e-05
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	9e-05
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	9e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	1e-04
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	1e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	1e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	1e-04
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	1e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	1e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	1e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	1e-04
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	1e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	1e-04
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	1e-04
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	1e-04
PHA03325	418	PHA03325, PHA03325, nuclear-egress-membrane-like p	1e-04
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	1e-04
PRK12799	421	PRK12799, motB, flagellar motor protein MotB; Revi	1e-04
PRK13335	356	PRK13335, PRK13335, superantigen-like protein; Rev	1e-04
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	1e-04
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	1e-04
pfam05110	1154	pfam05110, AF-4, AF-4 proto-oncoprotein	1e-04
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	1e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-04
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	2e-04
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	2e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	2e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	2e-04
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	2e-04
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	2e-04
pfam11725	1771	pfam11725, AvrE, Pathogenicity factor	2e-04
pfam08580	626	pfam08580, KAR9, Yeast cortical protein KAR9	2e-04
PRK12495	226	PRK12495, PRK12495, hypothetical protein; Provisio	2e-04
PHA03132	580	PHA03132, PHA03132, thymidine kinase; Provisional	2e-04
PRK11901	327	PRK11901, PRK11901, hypothetical protein; Reviewed	2e-04
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	2e-04
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	2e-04
COG3456	430	COG3456, COG3456, Predicted component of the type	2e-04
COG3456	430	COG3456, COG3456, Predicted component of the type	2e-04
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	2e-04
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	2e-04
pfam09507	427	pfam09507, CDC27, DNA polymerase subunit Cdc27	2e-04
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	2e-04
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	2e-04
pfam09786	559	pfam09786, CytochromB561_N, Cytochrome B561, N ter	2e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	3e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	3e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-04
PRK14949	944	PRK14949, PRK14949, DNA polymerase III subunits ga	3e-04
PRK14949	944	PRK14949, PRK14949, DNA polymerase III subunits ga	3e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	3e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	3e-04
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	3e-04
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	3e-04
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	3e-04
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	3e-04
pfam05539	408	pfam05539, Pneumo_att_G, Pneumovirinae attachment	3e-04
pfam05539	408	pfam05539, Pneumo_att_G, Pneumovirinae attachment	3e-04
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	3e-04
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	3e-04
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	3e-04
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	3e-04
cd05095	296	cd05095, PTKc_DDR2, Catalytic domain of the Protei	3e-04
PHA03321	694	PHA03321, PHA03321, tegument protein VP11/12; Prov	3e-04
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	3e-04
TIGR03490	541	TIGR03490, Mycoplas_LppA, mycoides cluster lipopro	3e-04
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	3e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	4e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	4e-04
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	4e-04
pfam10428	419	pfam10428, SOG2, RAM signalling pathway protein	4e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	4e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	4e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	4e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	4e-04
PRK08691	709	PRK08691, PRK08691, DNA polymerase III subunits ga	4e-04
PHA03132	580	PHA03132, PHA03132, thymidine kinase; Provisional	4e-04
pfam04484	313	pfam04484, DUF566, Family of unknown function (DUF	4e-04
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	4e-04
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	4e-04
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	4e-04
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	4e-04
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	4e-04
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	4e-04
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	4e-04
pfam03326	500	pfam03326, Herpes_TAF50, Herpesvirus transcription	4e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	5e-04
pfam10428	419	pfam10428, SOG2, RAM signalling pathway protein	5e-04
PHA03325	418	PHA03325, PHA03325, nuclear-egress-membrane-like p	5e-04
PRK13042	291	PRK13042, PRK13042, superantigen-like protein; Rev	5e-04
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	5e-04
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	5e-04
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	5e-04
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	5e-04
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	5e-04
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	5e-04
pfam04388	667	pfam04388, Hamartin, Hamartin protein	5e-04
COG5373	931	COG5373, COG5373, Predicted membrane protein [Func	5e-04
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	5e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	6e-04
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	6e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	6e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	6e-04
PRK14949	944	PRK14949, PRK14949, DNA polymerase III subunits ga	6e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	6e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	6e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	6e-04
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	6e-04
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	6e-04
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	6e-04
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	6e-04
COG5373	931	COG5373, COG5373, Predicted membrane protein [Func	6e-04
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	6e-04
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	6e-04
PLN02217	670	PLN02217, PLN02217, probable pectinesterase/pectin	6e-04
cd05096	304	cd05096, PTKc_DDR1, Catalytic domain of the Protei	6e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	7e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	7e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	7e-04
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	7e-04
pfam02993	238	pfam02993, MCPVI, Minor capsid protein VI	7e-04
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	8e-04
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	8e-04
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	8e-04
pfam04502	321	pfam04502, DUF572, Family of unknown function (DUF	8e-04
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	8e-04
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	8e-04
PLN02328	808	PLN02328, PLN02328, lysine-specific histone demeth	8e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	9e-04
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	9e-04
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	9e-04
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	9e-04
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	0.001
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.001
pfam03999	619	pfam03999, MAP65_ASE1, Microtubule associated prot	0.001
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.001
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.001
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	0.001
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.001
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.001
PHA03325	418	PHA03325, PHA03325, nuclear-egress-membrane-like p	0.001
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	0.001
COG5099	777	COG5099, COG5099, RNA-binding protein of the Puf f	0.001
PHA03132	580	PHA03132, PHA03132, thymidine kinase; Provisional	0.001
PRK12799	421	PRK12799, motB, flagellar motor protein MotB; Revi	0.001
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	0.001
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	0.001
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	0.001
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	0.001
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	0.001
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	0.001
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	0.001
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	0.001
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	0.001
pfam04388	667	pfam04388, Hamartin, Hamartin protein	0.001
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	0.001
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	0.001
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	0.001
pfam03353	316	pfam03353, Lin-8, Ras-mediated vulval-induction an	0.001
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	0.001
pfam04929	381	pfam04929, Herpes_DNAp_acc, Herpes DNA replication	0.001
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.001
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.001
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.001
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.001
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	0.001
PTZ00441	576	PTZ00441, PTZ00441, sporozoite surface protein 2 (	0.001
cd05064	266	cd05064, PTKc_EphR_A10, Catalytic domain of the Pr	0.001
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	0.001
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.002
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	0.002
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.002
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	0.002
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	0.002
pfam06070	777	pfam06070, Herpes_UL32, Herpesvirus large structur	0.002
pfam10428	419	pfam10428, SOG2, RAM signalling pathway protein	0.002
pfam10428	419	pfam10428, SOG2, RAM signalling pathway protein	0.002
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.002
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.002
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.002
PRK08691	709	PRK08691, PRK08691, DNA polymerase III subunits ga	0.002
PHA03325	418	PHA03325, PHA03325, nuclear-egress-membrane-like p	0.002
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	0.002
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	0.002
PRK11901	327	PRK11901, PRK11901, hypothetical protein; Reviewed	0.002
PRK11901	327	PRK11901, PRK11901, hypothetical protein; Reviewed	0.002
PRK12799	421	PRK12799, motB, flagellar motor protein MotB; Revi	0.002
PRK12799	421	PRK12799, motB, flagellar motor protein MotB; Revi	0.002
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	0.002
COG3456	430	COG3456, COG3456, Predicted component of the type	0.002
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	0.002
pfam09786	559	pfam09786, CytochromB561_N, Cytochrome B561, N ter	0.002
TIGR03490	541	TIGR03490, Mycoplas_LppA, mycoides cluster lipopro	0.002
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	0.002
pfam02993	238	pfam02993, MCPVI, Minor capsid protein VI	0.002
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.002
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	0.002
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	0.002
PRK12727	559	PRK12727, PRK12727, flagellar biosynthesis regulat	0.002
pfam05044	908	pfam05044, Prox1, Homeobox prospero-like protein (	0.002
pfam03359	342	pfam03359, GKAP, Guanylate-kinase-associated prote	0.002
pfam04995	46	pfam04995, CcmD, Heme exporter protein D (CcmD)	0.002
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	0.002
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	0.002
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	0.002
cd05115	257	cd05115, PTKc_Zap-70, Catalytic domain of the Prot	0.002
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	0.003
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.003
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	0.003
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	0.003
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.003
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	0.003
PHA03132	580	PHA03132, PHA03132, thymidine kinase; Provisional	0.003
pfam04484	313	pfam04484, DUF566, Family of unknown function (DUF	0.003
PRK13042	291	PRK13042, PRK13042, superantigen-like protein; Rev	0.003
PRK12799	421	PRK12799, motB, flagellar motor protein MotB; Revi	0.003
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	0.003
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	0.003
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	0.003
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	0.003
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	0.003
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	0.003
PLN02328	808	PLN02328, PLN02328, lysine-specific histone demeth	0.003
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	0.003
PRK00708	209	PRK00708, PRK00708, sec-independent translocase; P	0.003
PRK00708	209	PRK00708, PRK00708, sec-independent translocase; P	0.003
pfam05505	717	pfam05505, Ebola_NP, Ebola nucleoprotein	0.003
cd06653	264	cd06653, STKc_MEKK3_like_1, Catalytic domain of MA	0.003
pfam11711	377	pfam11711, Tim54, Inner membrane protein import co	0.003
pfam12737	418	pfam12737, Mating_C, C-terminal domain of homeodom	0.003
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.004
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.004
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.004
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.004
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.004
PRK12495	226	PRK12495, PRK12495, hypothetical protein; Provisio	0.004
PHA03132	580	PHA03132, PHA03132, thymidine kinase; Provisional	0.004
COG3456	430	COG3456, COG3456, Predicted component of the type	0.004
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	0.004
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	0.004
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	0.004
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	0.004
PLN02217	670	PLN02217, PLN02217, probable pectinesterase/pectin	0.004
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.004
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	0.004
PRK12372	413	PRK12372, PRK12372, ribonuclease III; Reviewed	0.004
PRK11907	814	PRK11907, PRK11907, bifunctional 2',3'-cyclic nucl	0.004
COG3898	531	COG3898, COG3898, Uncharacterized membrane-bound p	0.004
PHA03201	318	PHA03201, PHA03201, uracil DNA glycosylase; Provis	0.004
PHA03369	663	PHA03369, PHA03369, capsid maturational protease;	0.004

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score =  112 bits (281), Expect = 4e-26
 Identities = 67/252 (26%), Positives = 94/252 (37%), Gaps = 8/252 (3%)

Query: 4    PSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPP 63
            P P P A  S++P PP       + P   + P   + P  P + P   + P  PP +  P
Sbjct: 2708 PEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPAT-PGGPARPARPPTTAGP 2766

Query: 64   TSSSPP---ASSPPTSSPPPASNPPTSSPP--PSPPASSPPTISPPPPVSNPPTRSPPPP 118
             + +PP   A+ PP     PA    + S    PSP   + P  +   P +  P  + P  
Sbjct: 2767 PAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAG 2826

Query: 119  SSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPS-- 176
               PP ++ P+ P  PP   PP      ++ P       PP RSP + P     PP    
Sbjct: 2827 PLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRL 2886

Query: 177  SSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGI 236
            + P  +      A+PP     PP    P P  P    P    P  PPPP  +   P    
Sbjct: 2887 ARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPT 2946

Query: 237  PVPSTENTPGNG 248
              P+    P   
Sbjct: 2947 TDPAGAGEPSGA 2958

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score =  106 bits (266), Expect = 3e-24
 Identities = 79/281 (28%), Positives = 105/281 (37%), Gaps = 17/281 (6%)

Query: 6    PGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTS 65
            PGP AA  +SP  P +  P   P  P +    + P  PP +  P    PP+ PA+ PP  
Sbjct: 2723 PGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRR 2782

Query: 66   SSPPASSPPTSSPPPASNPPTSSPPPS----PPASSPPTISPPPPVSNPPTRSPPPPSST 121
             + PA +  + S     +P   + PP+    P A+ PP  SP  P+  P +  P  P   
Sbjct: 2783 LTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPP 2842

Query: 122  PPPNSPPSP------PSDPPANSPPPSNP---PSNLPPPPPSSVEPPKRSPPSVPPQNPP 172
            P P  P  P      P       PP  +P   P+    PP   +  P  S  +     PP
Sbjct: 2843 PGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPP 2902

Query: 173  PPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSP 232
              P   P   +PP P   P    PP P   PP P  P  P    + P     PS     P
Sbjct: 2903 DQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQP 2962

Query: 233  PPGIPVPSTENTPGNGTNPSSPE----SSSSPSNNGIGTAG 269
              G  VP     P       +P     +SS+P   G   + 
Sbjct: 2963 WLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSR 3003

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score =  100 bits (249), Expect = 5e-22
 Identities = 69/267 (25%), Positives = 98/267 (36%), Gaps = 17/267 (6%)

Query: 2    SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPP------- 54
            + PSP PP  ++  PPPP  +P    P P           P     P   S P       
Sbjct: 2612 APPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLG 2671

Query: 55   PSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRS 114
             +  AS+PP      A+ P   S    ++PP   P P P   +  + +P PP      ++
Sbjct: 2672 RAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQA 2731

Query: 115  PPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPP 174
             P   + P P + P+ P+ P   + P   P +  PP P      P  +P + PP+    P
Sbjct: 2732 SPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAP-----APPAAPAAGPPRRLTRP 2786

Query: 175  PSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPP 234
              +S  ++    P   P     PP     P  A P A  P   +   PPP S +  +PPP
Sbjct: 2787 AVASLSESRESLP--SPWDPADPPAAVLAPAAALPPAASP---AGPLPPPTSAQPTAPPP 2841

Query: 235  GIPVPSTENTPGNGTNPSSPESSSSPS 261
                P      G    P        PS
Sbjct: 2842 PPGPPPPSLPLGGSVAPGGDVRRRPPS 2868

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 98.1 bits (244), Expect = 2e-21
 Identities = 70/244 (28%), Positives = 87/244 (35%), Gaps = 21/244 (8%)

Query: 3    APSPGPPAANSSSPPPPVSNPPTISPPPPVSN---PPKSSPPPPPVSKPPTTSPPPSPPA 59
             P+P PPAA ++ PP  ++ P   S      +   P   + PP  V  P    PP + PA
Sbjct: 2766 PPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPA 2825

Query: 60   SN-PPTSSSPPASSPPTSSPPPASNPPTSS----------PPPSPPASSPPTISPPPPVS 108
               PP +S+ P + PP   PPP S P   S          PP   PA+ P   + PP   
Sbjct: 2826 GPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRR 2885

Query: 109  NPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPP 168
                       S   P   P  P  P A  PP   P    PP P     PP R  P + P
Sbjct: 2886 LARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAP 2945

Query: 169  QNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTK 228
               P            P   A+ P  V  P  + P        P PS  +P S  PP T 
Sbjct: 2946 TTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQ-------PAPSREAPASSTPPLTG 2998

Query: 229  RLSP 232
                
Sbjct: 2999 HSLS 3002

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 96.2 bits (239), Expect = 7e-21
 Identities = 67/267 (25%), Positives = 89/267 (33%), Gaps = 11/267 (4%)

Query: 3    APSPGPPAANSSSP--PPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS 60
            A   G  A  SS P  P   +  PT+     +++PP   P P P +     S  P PP  
Sbjct: 2667 ARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEP-APHALVSATPLPPGP 2725

Query: 61   NPPTSSSPPASSPPTSSPPPAS--NPPTSSPPPSPPASSPPTISPPP--PVSNPPTRSPP 116
                 +SP   + P     PA    P   + P  PP ++ P    PP  P + PP R   
Sbjct: 2726 AAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTR 2785

Query: 117  PPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPP--PSSVEPPKRSPPSVPPQNPPPP 174
            P  ++   +    P    PA+ P     P+   PP   P+   PP  S     P  PP P
Sbjct: 2786 PAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGP 2845

Query: 175  PSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPP 234
            P  S P     AP         PP       PA+P  P     +  +    +     PP 
Sbjct: 2846 PPPSLPLGGSVAPGG--DVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPD 2903

Query: 235  GIPVPSTENTPGNGTNPSSPESSSSPS 261
                P     P        P     P 
Sbjct: 2904 QPERPPQPQAPPPPQPQPQPPPPPQPQ 2930

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 92.3 bits (229), Expect = 1e-19
 Identities = 73/288 (25%), Positives = 94/288 (32%), Gaps = 22/288 (7%)

Query: 3    APSPGPPAANS-----SSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSP 57
            AP P  PA  S      +PP        +        P   SP PP    P    P PSP
Sbjct: 2574 APRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSP 2633

Query: 58   PASNPPTSSSPPASSPP----TSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTR 113
             A+ P     P    P       +P   S P  +        +S P   P    + P   
Sbjct: 2634 AANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVG 2693

Query: 114  S------PPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVP 167
            S      PPPP  TP P       + P    P P+      P  P +   P   + P+ P
Sbjct: 2694 SLTSLADPPPPPPTPEPAPHALVSATPL--PPGPAAARQASPALPAAPAPPAVPAGPATP 2751

Query: 168  PQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPST 227
                 P    +      PAP A P +   PP   T P  AS    R S  SP  P  P  
Sbjct: 2752 GGPARPARPPTTAGPPAPAPPAAPAA--GPPRRLTRPAVASLSESRESLPSPWDPADPPA 2809

Query: 228  KRLSPPPGIPV---PSTENTPGNGTNPSSPESSSSPSNNGIGTAGTVV 272
              L+P   +P    P+    P     P++P     P    +   G+V 
Sbjct: 2810 AVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVA 2857

Length = 3151

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 86.1 bits (214), Expect = 2e-19
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 375 LGEGGFGSVYKG-YLPDGREVAIKQLKIGGGQGERE-FKAEVEIISRIHHRHLVSLVGYC 432
           LGEGGFG+VY       G++VAIK +K        E    E+EI+ +++H ++V L G  
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVF 60

Query: 433 ISDDRRLLIYDYVPNNTLYFHLH 455
             ++   L+ +Y    +L   L 
Sbjct: 61  EDENHLYLVMEYCEGGSLKDLLK 83

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 90.0 bits (223), Expect = 8e-19
 Identities = 69/267 (25%), Positives = 95/267 (35%), Gaps = 18/267 (6%)

Query: 23   PPTISPPPPVSNPPKSSPPPPPVSKPPTTSP------PPSPPASNPPTSSSPPASSPPTS 76
            PP + P  P + P +S PPP P  +P   +       P +PP S  P +       P   
Sbjct: 2552 PPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGP 2611

Query: 77   SPPPASNPPTSSPPPSPPASSPPTISPPPPVSNP-PTRSPPPPSSTPPPNSPP---SPPS 132
            +PP    P T +P P PP+ SP    P P      P    P     P   S P       
Sbjct: 2612 APPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLG 2671

Query: 133  DPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSP------PKNSPPA 186
                 S PP  P      P   S+      PP  P   P P    S       P  +  A
Sbjct: 2672 RAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQA 2731

Query: 187  PIAVPPSNVPPPPTQTPPTPASPIAP--RPSNSSPNSPPPPSTKRLSPPPGIPVPSTENT 244
              A+P +  PP     P TP  P  P   P+ + P +P PP+     PP  +  P+  + 
Sbjct: 2732 SPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASL 2791

Query: 245  PGNGTNPSSPESSSSPSNNGIGTAGTV 271
              +  +  SP   + P    +  A  +
Sbjct: 2792 SESRESLPSPWDPADPPAAVLAPAAAL 2818

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 89.2 bits (221), Expect = 1e-18
 Identities = 69/280 (24%), Positives = 94/280 (33%), Gaps = 24/280 (8%)

Query: 3    APSPGPPAANSSSPPP-PVSNP-----------PTISPPPPVSNPPKSSPPPPPVSKPPT 50
             P+  P A + S PPP P   P           P   P       P      P    PP+
Sbjct: 2556 PPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPS 2615

Query: 51   TSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNP 110
              PP +     PP S SP A+ P    PP    P      P+P   S P  +        
Sbjct: 2616 PLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRL--GRA 2673

Query: 111  PTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQN 170
               S PP         P        A+ PPP   P   P P       P    P+   Q 
Sbjct: 2674 AQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPE--PAPHALVSATPLPPGPAAARQA 2731

Query: 171  PPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRL 230
             P  P++     +PPA  A P +   P     PPT A P AP P  +    PP     RL
Sbjct: 2732 SPALPAAP----APPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPR----RL 2783

Query: 231  SPPPGIPVPSTENTPGNGTNPSSPESSSSPSNNGIGTAGT 270
            + P    +  +  +  +  +P+ P ++       +  A +
Sbjct: 2784 TRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAAS 2823

Length = 3151

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 88.4 bits (219), Expect = 1e-18
 Identities = 45/230 (19%), Positives = 73/230 (31%), Gaps = 14/230 (6%)

Query: 1   MSAPSPGPPAANSSSPPP---PVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSP 57
           M A  PG     +        PV+ P   +  P  + P  ++PP  P +  P  +     
Sbjct: 360 MLAFRPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAP-AAAPAAAAAARA 418

Query: 58  PASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPP 117
            A+ P   S  P +                +P P+P A+      P      P   +   
Sbjct: 419 VAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAA 478

Query: 118 PSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSS 177
               P   +P + P+    + PP    P     P P+  +    +P     ++ P P ++
Sbjct: 479 A---PARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDA---APAGWVAESIPDPATA 532

Query: 178 SPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPST 227
            P         A   +  P     T P      APRP  +S +  P    
Sbjct: 533 DPDDAFETLAPAPAAAPAPRAAAATEPVV----APRPPRASASGLPDMFD 578

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 88.4 bits (219), Expect = 1e-18
 Identities = 41/222 (18%), Positives = 60/222 (27%), Gaps = 10/222 (4%)

Query: 8   PPAANSSSPPPPVSNPPTISPPPPVSNP----PKSSPPPPPVSKPPTTSPPPSPPASNPP 63
           P  +   + P   +  P   P P  + P    P  + PP   +  P  +      A+ P 
Sbjct: 365 PGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA 424

Query: 64  TSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPP--PPVSNPPTRSPPPPSST 121
             S  P +                +P P+P A+      P    P       +  P  + 
Sbjct: 425 RRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAA 484

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPK 181
           P     P+    PP    PP       P P      P      S+P      P  +    
Sbjct: 485 PAAAPAPADDDPPPWEELPPEFA---SPAPAQPDAAPAGWVAESIPDPATADPDDAFETL 541

Query: 182 NSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPP 223
              PA    P +     P    P P    A    +      P
Sbjct: 542 APAPAAAPAPRAAAATEP-VVAPRPPRASASGLPDMFDGDWP 582

Length = 700

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 88.8 bits (220), Expect = 2e-18
 Identities = 69/283 (24%), Positives = 95/283 (33%), Gaps = 28/283 (9%)

Query: 3    APSPGP-PAANSSSPPPPVSNPPTISPPPPVSNP--------------------PKSSPP 41
            AP PG     +  +PP P    P I P  PV  P                        PP
Sbjct: 2495 APDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWIRGLEELASDDAGDPPPP 2554

Query: 42   PPPVSKPPTT--SPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPP 99
             PP + P     S PP  PA  P   +    +  P + P  A           P   +PP
Sbjct: 2555 LPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPP 2614

Query: 100  TISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPP 159
              SP PP ++ P   PPPPS +P  N P   P         P + P+      P      
Sbjct: 2615 --SPLPPDTHAP--DPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRL 2670

Query: 160  KRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSP 219
             R+  +  P   P   ++ P   S  +    PP    P P       A+P+ P P+ +  
Sbjct: 2671 GRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQ 2730

Query: 220  NSPPPPSTKRLSPPPGIPV-PSTENTPGNGTNPSSPESSSSPS 261
             SP  P+       P  P  P     P      + P + + P+
Sbjct: 2731 ASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPA 2773

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 88.5 bits (220), Expect = 2e-18
 Identities = 49/213 (23%), Positives = 70/213 (32%), Gaps = 3/213 (1%)

Query: 20  VSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPP 79
           V  P   +        P SS PP   ++P   + P +P A  P  +++ PA +    +P 
Sbjct: 587 VVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPG 646

Query: 80  PASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDP---PA 136
            A+          P AS      P       P   PP P+   P     + P+ P   PA
Sbjct: 647 VAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA 706

Query: 137 NSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVP 196
            +PP          PP ++      SP +  P   PP P   P     PA    PP+  P
Sbjct: 707 ATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAP 766

Query: 197 PPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKR 229
                  P P+ P                  +R
Sbjct: 767 AAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRR 799

Length = 824

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 83.7 bits (208), Expect = 3e-18
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 2/89 (2%)

Query: 369 FADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGERE-FKAEVEIISRIHHRHLV 426
           +     LGEG FG VY       G+ VAIK +K    + +RE    E++I+ ++ H ++V
Sbjct: 1   YEILEKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLKHPNIV 60

Query: 427 SLVGYCISDDRRLLIYDYVPNNTLYFHLH 455
            L      +D+  L+ +Y     L+  L 
Sbjct: 61  RLYDVFEDEDKLYLVMEYCEGGDLFDLLK 89

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 86.9 bits (215), Expect = 4e-18
 Identities = 43/210 (20%), Positives = 69/210 (32%), Gaps = 7/210 (3%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSP-PASN 61
           A +P    A +++ P   +  P   P  P + P  ++      + P   SP P    A+ 
Sbjct: 378 AAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAAR 437

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
             ++  P  +  P  +P  A  P  ++ P +         +   P    P  +P P    
Sbjct: 438 QASARGPGGAPAPAPAPAAA--PAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDD 495

Query: 122 PPP--NSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSV--PPQNPPPPPSS 177
           PPP    PP   S  PA              P P++ +P          P   P P  ++
Sbjct: 496 PPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAA 555

Query: 178 SPPKNSPPAPIAVPPSNVPPPPTQTPPTPA 207
           +      P P     S +P       P  A
Sbjct: 556 ATEPVVAPRPPRASASGLPDMFDGDWPALA 585

Length = 700

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 83.7 bits (208), Expect = 4e-18
 Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 6/87 (6%)

Query: 375 LGEGGFGSVYKGYL-----PDGREVAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVSL 428
           LGEG FG VYKG L         +VA+K LK G  + ER EF  E  I+ ++ H ++V L
Sbjct: 7   LGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLSHPNIVRL 66

Query: 429 VGYCISDDRRLLIYDYVPNNTLYFHLH 455
           +G C   +   ++ +Y+P   L   L 
Sbjct: 67  LGVCTQGEPLYIVTEYMPGGDLLDFLR 93

Length = 258

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 86.5 bits (214), Expect = 5e-18
 Identities = 41/198 (20%), Positives = 70/198 (35%), Gaps = 4/198 (2%)

Query: 39  SPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSP 98
           + P    + P      P+P A+ P  ++  PA+ P   +  PA+     +   +P   SP
Sbjct: 372 AGPATAAAAPVAQ---PAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSP 428

Query: 99  PTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEP 158
              +               P+  P P + P+  + P A  P P    +   P   +    
Sbjct: 429 APEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAA 488

Query: 159 PKRSPPSVPP-QNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNS 217
           P  +    PP +  PP  +S  P     AP      ++P P T  P      +AP P+ +
Sbjct: 489 PAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAA 548

Query: 218 SPNSPPPPSTKRLSPPPG 235
                   +   ++P P 
Sbjct: 549 PAPRAAAATEPVVAPRPP 566

Length = 700

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 84.3 bits (209), Expect = 3e-17
 Identities = 45/218 (20%), Positives = 68/218 (31%), Gaps = 2/218 (0%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
              P P AA    PP P S+ P      P +    ++P  P  +         S   +  
Sbjct: 587 VVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASA--APA 644

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTP 122
           P  ++P       + P  +             A + P  +P P     P  + P   +  
Sbjct: 645 PGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPA 704

Query: 123 PPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKN 182
           P  +PP+  +D PA  PP +   ++ P P      P    P   P     P     PP  
Sbjct: 705 PAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAP 764

Query: 183 SPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPN 220
           +P A  A  P   PP   +      +P           
Sbjct: 765 APAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAE 802

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 83.8 bits (207), Expect = 5e-17
 Identities = 43/221 (19%), Positives = 66/221 (29%), Gaps = 10/221 (4%)

Query: 27  SPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPT 86
           + P   +  P + P P   +       P +PPA+        PA++        A+ P  
Sbjct: 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAA----APAAAAAA--RAVAAAPAR 425

Query: 87  SSPPPSP-PASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPP 145
            SP P    A+   +   P     P       P++   P +    P    A + P    P
Sbjct: 426 RSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAP 485

Query: 146 SNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPT 205
           +  P P      P +  PP       P P           A     P+   P        
Sbjct: 486 AAAPAPADDDPPPWEELPPEFA---SPAPAQPDAAPAGWVAESIPDPATADPDDAFETLA 542

Query: 206 PASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPG 246
           PA   AP P  ++   P        +   G+P     + P 
Sbjct: 543 PAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWPA 583

Length = 700

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 83.1 bits (206), Expect = 8e-17
 Identities = 43/203 (21%), Positives = 66/203 (32%), Gaps = 4/203 (1%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
           +A   GPPA  SS PP   + P   + P   + P  +     P       +P  + P  +
Sbjct: 594 AAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHH 653

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPP---PVSNPPTRSPPPP 118
           P   + P AS      P  A     ++PPP+P  ++P   +      P   P    P   
Sbjct: 654 PKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQ 713

Query: 119 SSTPPPNSPPSP-PSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSS 177
           +  P    P +   +  P+ +     P    P  PP     P + PP   P     P ++
Sbjct: 714 ADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAA 773

Query: 178 SPPKNSPPAPIAVPPSNVPPPPT 200
            PP                    
Sbjct: 774 PPPSPPSEEEEMAEDDAPSMDDE 796

Length = 824

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 82.9 bits (205), Expect = 1e-16
 Identities = 59/276 (21%), Positives = 89/276 (32%), Gaps = 10/276 (3%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSP-PPSPPAS 60
              SP PP  +S  PPPP   P +  P P         P   P   P  + P   + PA+
Sbjct: 102 REGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAA 161

Query: 61  NPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSS 120
               ++S   ++ P SSP   +  P+S P   PP++ P   SP PP  + P  +     +
Sbjct: 162 VASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPA 221

Query: 121 TPPPNSPPSPPSDPPANSPPP------SNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPP 174
             P  S         ++S           P +  P P P+ +  P R   +     P   
Sbjct: 222 PAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSR 281

Query: 175 PSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSP---PPPSTKRLS 231
           P  +   +SP      P  + P          AS  +     SS +S       S     
Sbjct: 282 PGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAV 341

Query: 232 PPPGIPVPSTENTPGNGTNPSSPESSSSPSNNGIGT 267
            P   P  S   +        S        +    +
Sbjct: 342 SPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSS 377

Length = 1352

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 81.8 bits (202), Expect = 2e-16
 Identities = 45/206 (21%), Positives = 70/206 (33%), Gaps = 12/206 (5%)

Query: 60  SNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPS 119
           + P T+++ P + P  ++  PA+  P  + PP+ PA++P   +    V+  P R  P P 
Sbjct: 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPE 431

Query: 120 STPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSP 179
           +        +    P     P   P       P ++  P    P  V       P  ++P
Sbjct: 432 ALAAARQ--ASARGPGGAPAPAPAP----AAAPAAAARPAAAGPRPVAAAAAAAPARAAP 485

Query: 180 PKNSPPAPIAVPPSNVPPP------PTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPP 233
                PA    PP    PP      P Q    PA  +A    + +   P          P
Sbjct: 486 AAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAP 545

Query: 234 PGIPVPSTENTPGNGTNPSSPESSSS 259
              P P           P  P +S+S
Sbjct: 546 AAAPAPRAAAATEPVVAPRPPRASAS 571

Length = 700

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 78.7 bits (195), Expect = 2e-16
 Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 6/79 (7%)

Query: 375 LGEGGFGSVYKGYL-----PDGREVAIKQLKIG-GGQGEREFKAEVEIISRIHHRHLVSL 428
           LGEG FG VYKG L         EVA+K LK     Q   EF  E  I+ ++ H ++V L
Sbjct: 7   LGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNIVKL 66

Query: 429 VGYCISDDRRLLIYDYVPN 447
           +G C  ++  +++ +Y+P 
Sbjct: 67  LGVCTEEEPLMIVMEYMPG 85

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 78.3 bits (194), Expect = 2e-16
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 6/79 (7%)

Query: 375 LGEGGFGSVYKGYL-----PDGREVAIKQLK-IGGGQGEREFKAEVEIISRIHHRHLVSL 428
           LGEG FG VYKG L         EVA+K LK     Q   EF  E  I+ ++ H ++V L
Sbjct: 7   LGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNVVKL 66

Query: 429 VGYCISDDRRLLIYDYVPN 447
           +G C  ++   ++ +Y+  
Sbjct: 67  LGVCTEEEPLYIVMEYMEG 85

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 78.0 bits (193), Expect = 3e-16
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 5/91 (5%)

Query: 373 NLLGEGGFGSVYKGYLPDG----REVAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVS 427
             LGEG FG VYKG L        EVA+K LK    + ER +F  E  ++ ++ H ++V 
Sbjct: 1   KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVR 60

Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHGKW 458
           L+G C  ++   L+ +Y+    L  +L    
Sbjct: 61  LLGVCTEEEPLYLVLEYMEGGDLLDYLRKSR 91

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 79.8 bits (197), Expect = 7e-16
 Identities = 29/139 (20%), Positives = 53/139 (38%), Gaps = 12/139 (8%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
           +A +     A   +P  P +  P  +P    +  P  +  P   +  P   P  +PPA  
Sbjct: 367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPA-- 424

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
                  P ++P  ++P  A   P ++P     A +PP  + P  V+ P   +P P  ++
Sbjct: 425 -------PVAAPAAAAPAAA---PAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVAS 474

Query: 122 PPPNSPPSPPSDPPANSPP 140
             P    +P +     +  
Sbjct: 475 AAPAPAAAPAAARLTPTEE 493

Length = 618

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 80.4 bits (198), Expect = 8e-16
 Identities = 56/203 (27%), Positives = 70/203 (34%), Gaps = 22/203 (10%)

Query: 2    SAPSPGPPAANSSSPP---PPVSNPPTISPPPPVSNPPKSSPPPPPVS------------ 46
            S   P  P A   +P    PP ++P    PPP  + P    PPP P              
Sbjct: 2800 SPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPG 2859

Query: 47   -----KPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTI 101
                 +PP+ SP   P A   P        +   S+   A  P     PP P A  PP  
Sbjct: 2860 GDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQP 2919

Query: 102  SPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKR 161
             P PP    P   PPPP    PP +P + P+   A  P  + P   L    P  V  P+ 
Sbjct: 2920 QPQPPPPPQPQPPPPPPPRPQPPLAPTTDPA--GAGEPSGAVPQPWLGALVPGRVAVPRF 2977

Query: 162  SPPSVPPQNPPPPPSSSPPKNSP 184
              P   P    P  S+ P     
Sbjct: 2978 RVPQPAPSREAPASSTPPLTGHS 3000

Length = 3151

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 78.7 bits (194), Expect = 2e-15
 Identities = 57/264 (21%), Positives = 81/264 (30%), Gaps = 8/264 (3%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
            A S    A   SSP      P +    PP S PP ++ P PP    P ++   SP  + 
Sbjct: 165 DAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAP 224

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
             +++    +S   SS   +S          P     P   P           P      
Sbjct: 225 GRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGP 284

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPK 181
              +S P   S  P+    PS+P S   P  P +      S  S          SS    
Sbjct: 285 ASSSSSPRERSPSPS----PSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAA 340

Query: 182 NSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNS----SPNSPPPPSTKRLSPPPGIP 237
            SP    +  PS   PPP   P +P     P  + S    S   P     +         
Sbjct: 341 VSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARR 400

Query: 238 VPSTENTPGNGTNPSSPESSSSPS 261
             +T   P     PS  ++ ++  
Sbjct: 401 RDATGRFPAGRPRPSPLDAGAASG 424

Length = 1352

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 76.3 bits (188), Expect = 3e-15
 Identities = 28/134 (20%), Positives = 36/134 (26%), Gaps = 3/134 (2%)

Query: 78  PPPASNPPTSSPP--PSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPP 135
            P    P             +S  +           + S PP SS   P+ P  P     
Sbjct: 147 DPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSS 206

Query: 136 ANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVP-PQNPPPPPSSSPPKNSPPAPIAVPPSN 194
            +       PS+     P        +P   P P  PPPPP    P  S   P     S 
Sbjct: 207 PSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASA 266

Query: 195 VPPPPTQTPPTPAS 208
            P P         +
Sbjct: 267 TPAPIGGITLDDDA 280

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 76.7 bits (189), Expect = 7e-15
 Identities = 25/129 (19%), Positives = 46/129 (35%), Gaps = 6/129 (4%)

Query: 81  ASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPP 140
            +  P     P+ P ++ P  +P    +  P  +  P ++   P +PP+     P  + P
Sbjct: 371 EAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPV-AAP 429

Query: 141 PSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPT 200
            +  P+  P   P++V     +    PP    P   + P + +P   +A         P 
Sbjct: 430 AAAAPAAAPAAAPAAV-----ALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPA 484

Query: 201 QTPPTPASP 209
               TP   
Sbjct: 485 AARLTPTEE 493

Length = 618

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 76.7 bits (189), Expect = 8e-15
 Identities = 30/139 (21%), Positives = 51/139 (36%), Gaps = 8/139 (5%)

Query: 57  PPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPP 116
           P A+    + +   +     +  PA+ P   +     PA++P   +  P    PP  +PP
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAA--PPAAAPP 423

Query: 117 PPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPS 176
            P + P   +P + P+  PA       PP       P +V  P R  P     +  P P+
Sbjct: 424 APVAAPAAAAPAAAPAAAPAAVALAPAPP---AQAAPETVAIPVRVAPEPAVASAAPAPA 480

Query: 177 SSPPKNSPPAPIAVPPSNV 195
           ++P              +V
Sbjct: 481 AAPA---AARLTPTEEGDV 496

Length = 618

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 76.2 bits (188), Expect = 1e-14
 Identities = 33/189 (17%), Positives = 53/189 (28%), Gaps = 1/189 (0%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
           A    P A  + +P    + P   S  P          P        +      P  +  
Sbjct: 616 AAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGG 675

Query: 63  PTSSSPPASSPPTSSPPPASNPPTS-SPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
              ++PP +  P +   PA   P   +P P+    +     P          +  P  + 
Sbjct: 676 AAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAA 735

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPK 181
             P   P  P DPP  +  P+ PP    P P ++        P    +      + S   
Sbjct: 736 DDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDD 795

Query: 182 NSPPAPIAV 190
                   V
Sbjct: 796 EDRRDAEEV 804

Length = 824

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 34/132 (25%), Positives = 42/132 (31%), Gaps = 2/132 (1%)

Query: 84  PPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSN 143
           P    P       +    +            P   S + PP+S P  PS P     P S 
Sbjct: 148 PNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSP 207

Query: 144 PPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVP-PPPTQT 202
             S+LPP P S         P  P  NP PPP  + P   P   +    +  P PP    
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPT-NPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASA 266

Query: 203 PPTPASPIAPRP 214
            P P   I    
Sbjct: 267 TPAPIGGITLDD 278

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 75.5 bits (186), Expect = 2e-14
 Identities = 25/122 (20%), Positives = 42/122 (34%)

Query: 27  SPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPT 86
           +  P     P       P + P   +     PA+ P  ++S PA+ P  + P P + P  
Sbjct: 372 AAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAA 431

Query: 87  SSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPS 146
           ++P  +P A+       P P +     +   P    P  +  S    P A        P+
Sbjct: 432 AAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPT 491

Query: 147 NL 148
             
Sbjct: 492 EE 493

Length = 618

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 75.2 bits (185), Expect = 3e-14
 Identities = 57/248 (22%), Positives = 78/248 (31%), Gaps = 8/248 (3%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
                 P  +   PP         SP    S+   S     P+S P  T+  PS P + P
Sbjct: 134 LSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEP 193

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSPPPSPP--------ASSPPTISPPPPVSNPPTRS 114
           P S+ P A+SP         +   SSP P+P         ASS  + S           +
Sbjct: 194 PPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPEN 253

Query: 115 PPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPP 174
             P     P   P         N P     P++    P      P  S P   P    P 
Sbjct: 254 ECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPR 313

Query: 175 PSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPP 234
            SSS   +   +  +   S+         P P+   +P PS   P + P    KR  P  
Sbjct: 314 ASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSR 373

Query: 235 GIPVPSTE 242
               P+  
Sbjct: 374 APSSPAAS 381

Length = 1352

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 74.9 bits (184), Expect = 3e-14
 Identities = 43/266 (16%), Positives = 74/266 (27%), Gaps = 34/266 (12%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
           A +     A++      V+     +  P  +    ++    P + P    PP +    + 
Sbjct: 385 ARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPA---PPATADRGDD 441

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSPPPSP---PASSPPTISPPPPVSNPPTRSPPPPS 119
                 P  +   +     S        P      AS+P + +PP     P  R+  P +
Sbjct: 442 AADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSA 501

Query: 120 STPPPNSPPSPPSDPPANS--PPPSNPPSNLPPPPPSSVEPPKR---------------- 161
           +TP        P+           + P     PP P++  P  R                
Sbjct: 502 ATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGM 561

Query: 162 --SPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSP 219
             S            P+++P     PA         P    Q P   A         +  
Sbjct: 562 RVSSDRGARAAAAAKPAAAPAAAPKPAA--------PRVAVQVPTPRARAATGDAPPNGA 613

Query: 220 NSPPPPSTKRLSPPPGIPVPSTENTP 245
                 +  R +PPP   +P  +  P
Sbjct: 614 ARAEQAAESRGAPPPWEDIPPDDYVP 639

Length = 830

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 74.4 bits (183), Expect = 5e-14
 Identities = 49/229 (21%), Positives = 56/229 (24%), Gaps = 18/229 (7%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
             P P PP A  S P P       +S     +   +    P     P    P   PP   
Sbjct: 130 PKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPP--- 186

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
                   A+ P    P      P   PP   P    P    P P   P     PP    
Sbjct: 187 ------RQAAFPQQGPPEQPPGYP--QPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQ 238

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPK 181
            PP              PPP   P      PP     P   PP   P   P  P      
Sbjct: 239 QPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQP---PPQNQPTPHPGLPQGQNAP 295

Query: 182 NSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRL 230
             PP    + P    P   Q  P        +    S       S +  
Sbjct: 296 LPPPQQPQLLPLVQQPQGQQRGPQF----REQLVQLSQQQREALSQEEA 340

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 74.1 bits (182), Expect = 6e-14
 Identities = 64/289 (22%), Positives = 97/289 (33%), Gaps = 33/289 (11%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
           A       A +     P + PP        +N  +S+P     +  P +      P    
Sbjct: 51  AAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPG 110

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTP 122
           P+S  PP  +PP +SPPP+  P  S       +  PP  + PP     P       S   
Sbjct: 111 PSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASP---AAVASDAA 167

Query: 123 PPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKN 182
                  P S P   +  PS+PP+  PP  P +   P+    S P       P+ +P ++
Sbjct: 168 SSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRS 227

Query: 183 S------------------------------PPAPIAVPPSNVPPPPTQTPPTPASPIAP 212
           +                               PAPI +P           P +   P + 
Sbjct: 228 AADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASS 287

Query: 213 RPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPS 261
             S    +  P PS+    P P  P  S+ ++    ++ SS  SSS  S
Sbjct: 288 SSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESS 336

Length = 1352

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 71.6 bits (176), Expect = 8e-14
 Identities = 31/132 (23%), Positives = 43/132 (32%), Gaps = 2/132 (1%)

Query: 105 PPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPP 164
            P   PP       +     NS  S P +    +    + P +  P  PS   PP+    
Sbjct: 147 DPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSS 206

Query: 165 SVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPP 224
                 PP P   S   ++PP     P +  PPP    PP P     P  S + P  P  
Sbjct: 207 PSDSSLPPAPS--SFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSA 264

Query: 225 PSTKRLSPPPGI 236
            +T        +
Sbjct: 265 SATPAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 73.5 bits (181), Expect = 1e-13
 Identities = 36/182 (19%), Positives = 58/182 (31%), Gaps = 1/182 (0%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
            A    P  A +++ P   S  P      P  +P   + P          +       + 
Sbjct: 621 PAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAA 680

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
           PP + +P A + P  + P    P  ++ PP+  A  P    P          SP      
Sbjct: 681 PPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASA-PSPAADDPV 739

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPK 181
           P P  P  PP    A + PP  P       P ++  P   S      ++  P       +
Sbjct: 740 PLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRR 799

Query: 182 NS 183
           ++
Sbjct: 800 DA 801

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 72.7 bits (179), Expect = 1e-13
 Identities = 44/234 (18%), Positives = 70/234 (29%), Gaps = 15/234 (6%)

Query: 42  PPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTI 101
           P P +      P P+        +  P A + P +   PA  P  ++  P+  +++P   
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAAR-PAAPAAPAAPAAPA--PAGAAAAPAEASAAPAPG 646

Query: 102 SPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKR 161
              P         P           P       PA  PP   P      P   +   P +
Sbjct: 647 VAAPEHHPKHVAVPDASDGGDG--WPAKAGGAAPAAPPPAPAP----AAPAAPAGAAPAQ 700

Query: 162 SPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNS 221
             P+     P         +    A  A  PS     P   PP P  P  P  + + P  
Sbjct: 701 PAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPP 760

Query: 222 PPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPSNNGIGTAGTVVIAV 275
           PP P       P   P  +   +P +     + + + S  +     A  V + +
Sbjct: 761 PPAP------APAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAEEVAMEL 808

Length = 824

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 71.3 bits (175), Expect = 1e-13
 Identities = 38/141 (26%), Positives = 46/141 (32%), Gaps = 11/141 (7%)

Query: 47  KPPTTSPPPS---PPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISP 103
           + P   PP       A    T+S              + + P SS P  P   SPP    
Sbjct: 146 EDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPS 205

Query: 104 PPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSP 163
            P  S+ P   P P S     ++PP  P  P   SPPP       PPPPP    PP  + 
Sbjct: 206 SPSDSSLP---PAPSS--FQSDTPPPSPESPTNPSPPPGPAA---PPPPPVQQVPPLSTA 257

Query: 164 PSVPPQNPPPPPSSSPPKNSP 184
              PP     P          
Sbjct: 258 KPTPPSASATPAPIGGITLDD 278

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 73.0 bits (179), Expect = 1e-13
 Identities = 47/260 (18%), Positives = 88/260 (33%), Gaps = 6/260 (2%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
            AP  G PA  + + P P +          V      +        P   +   +  A  
Sbjct: 366 GAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEA 425

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
           PP + +PPA++           P  +       A S        P ++  + S P   + 
Sbjct: 426 PPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAP 485

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPK 181
           P     P+P +  P+ + P + P +  P        P   +PP+ P   PP P +++P  
Sbjct: 486 PDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPA-PEARPPTPAAAAPAA 544

Query: 182 NSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPST 241
            +  A  A+           +     +  A +P+     + P  + K  +P   + VP+ 
Sbjct: 545 RAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPA-----AAPAAAPKPAAPRVAVQVPTP 599

Query: 242 ENTPGNGTNPSSPESSSSPS 261
                 G  P +  + +  +
Sbjct: 600 RARAATGDAPPNGAARAEQA 619

Length = 830

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 73.0 bits (180), Expect = 1e-13
 Identities = 23/142 (16%), Positives = 38/142 (26%)

Query: 28  PPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTS 87
           P  P+  P        P +    T+ P +  A     +  PP +S P  +P       TS
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS 420

Query: 88  SPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSN 147
               +         +     S P   S   P ++         P+       P       
Sbjct: 421 QLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYR 480

Query: 148 LPPPPPSSVEPPKRSPPSVPPQ 169
                P  V+    + P    +
Sbjct: 481 WKATNPVEVKKEPVATPKALKK 502

Length = 647

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 72.1 bits (177), Expect = 3e-13
 Identities = 59/266 (22%), Positives = 85/266 (31%), Gaps = 9/266 (3%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
           + P        S S    VS+   ++    V+         PP    P   P    PA+ 
Sbjct: 26  ATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPP--TGPPPGPGTEAPANE 83

Query: 62  PPTSSSP------PASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSP 115
             ++ +       PAS     SP P        PPP+PP +SPP    P           
Sbjct: 84  SRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGS 143

Query: 116 PPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPP 175
           P P     P +  + P+   +++       +     P  +   P   P   PP  PP   
Sbjct: 144 PGPPPAASPPAAGASPAAVASDAASSR-QAALPLSSPEETARAPSSPPAEPPPSTPPAAA 202

Query: 176 SSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPG 235
           S  PP+ S P   +       P  +      AS      S SS     P +   L  P  
Sbjct: 203 SPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAP 262

Query: 236 IPVPSTENTPGNGTNPSSPESSSSPS 261
           I +P+          PSS    +S S
Sbjct: 263 ITLPTRIWEASGWNGPSSRPGPASSS 288

Length = 1352

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 71.7 bits (176), Expect = 3e-13
 Identities = 24/134 (17%), Positives = 48/134 (35%), Gaps = 4/134 (2%)

Query: 81  ASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPP 140
           A  P  ++   +P     P      P +  P  +P   ++  P  +     +     +PP
Sbjct: 363 AFKPAAAAEAAAPAEKKTPA----RPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPP 418

Query: 141 PSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPT 200
            + PP+ +  P  ++      + P+     P PP  ++P   + P  +A  P+     P 
Sbjct: 419 AAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPA 478

Query: 201 QTPPTPASPIAPRP 214
                 A+ + P  
Sbjct: 479 PAAAPAAARLTPTE 492

Length = 618

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 71.4 bits (176), Expect = 3e-13
 Identities = 38/161 (23%), Positives = 59/161 (36%), Gaps = 5/161 (3%)

Query: 52  SPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPP 111
           +P P P    PP S++P AS+  T++P  A  PP +   P PPAS+P      P      
Sbjct: 363 APLPEPEV--PPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS 420

Query: 112 TRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNP 171
                         +  +  S+P A S      P N      +SV P   +    P +  
Sbjct: 421 QLLAARQQLQRAQGATKAKKSEPAAASRA---RPVNSALERLASVRPAPSALEKAPAKKE 477

Query: 172 PPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAP 212
                ++ P      P+A P +       +  P  A+ +A 
Sbjct: 478 AYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAA 518

Length = 647

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 69.6 bits (171), Expect = 3e-13
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 9/87 (10%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFK-----AEVEIISRIHHRHLVSL 428
           LG G FG+VYK      G+ VA+K LK    + E+  K      E+ I+ R+ H ++V L
Sbjct: 7   LGSGSFGTVYKAKHKGTGKIVAVKILKK---RSEKSKKDQTARREIRILRRLSHPNIVRL 63

Query: 429 VGYCISDDRRLLIYDYVPNNTLYFHLH 455
           +      D   L+ +Y     L+ +L 
Sbjct: 64  IDAFEDKDHLYLVMEYCEGGDLFDYLS 90

Length = 260

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 69.7 bits (171), Expect = 4e-13
 Identities = 38/136 (27%), Positives = 49/136 (36%), Gaps = 5/136 (3%)

Query: 68  PPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSP 127
           P    P       A    T+S    P   + P  + P     PP+ SP  PS   PP  P
Sbjct: 148 PNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSD---PPSSSPGVPSFPSPPEDP 204

Query: 128 PSP--PSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPP 185
            SP   S PPA S   S+ P   P  P +   PP  + P  PP    PP S++ P     
Sbjct: 205 SSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSA 264

Query: 186 APIAVPPSNVPPPPTQ 201
           +    P   +      
Sbjct: 265 SATPAPIGGITLDDDA 280

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 69.7 bits (171), Expect = 4e-13
 Identities = 31/131 (23%), Positives = 44/131 (33%), Gaps = 4/131 (3%)

Query: 28  PPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTS 87
           P PP+    + +      S          P +++P    S     P   SPP   + P+ 
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSD 209

Query: 88  SPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSN 147
           S  P  P  S      PPP    PT   PPP    PP  P          +  P+ P ++
Sbjct: 210 SSLPPAP--SSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLS--TAKPTPPSAS 265

Query: 148 LPPPPPSSVEP 158
             P P   +  
Sbjct: 266 ATPAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 70.9 bits (174), Expect = 5e-13
 Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 9/127 (7%)

Query: 41  PPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPP---PSPPASS 97
             P   K P      +P A+    +++ PA +      P A+    ++PP   P  P ++
Sbjct: 373 AAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA----PAAAASAPAAPPAAAPPAPVAA 428

Query: 98  PPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVE 157
           P   +P    +  P      P+        P   + P   +P P+   +   P    +  
Sbjct: 429 PAAAAPAAAPAAAPAAVALAPAPPAQA--APETVAIPVRVAPEPAVASAAPAPAAAPAAA 486

Query: 158 PPKRSPP 164
               +  
Sbjct: 487 RLTPTEE 493

Length = 618

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 71.0 bits (174), Expect = 5e-13
 Identities = 43/273 (15%), Positives = 71/273 (26%), Gaps = 26/273 (9%)

Query: 9   PAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSP 68
           PA      P              V  P   +      S  P  +       +     ++ 
Sbjct: 360 PAVTGGGAPGGGVPA---RVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAA 416

Query: 69  PASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPP 128
            A++    +PP A  PP ++      A     +                  + PP +S  
Sbjct: 417 AAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGS 476

Query: 129 S--PPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPA 186
           +  P SD P ++     P +  P     +  P  R+P +   ++ P   +   P+  PP 
Sbjct: 477 ASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPT 536

Query: 187 PIAVPPS------------------NVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTK 228
           P A  P+                   V           A P A   +      P  P   
Sbjct: 537 PAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAA---APKPAAPRVA 593

Query: 229 RLSPPPGIPVPSTENTPGNGTNPSSPESSSSPS 261
              P P     + +  P           S    
Sbjct: 594 VQVPTPRARAATGDAPPNGAARAEQAAESRGAP 626

Length = 830

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 70.5 bits (173), Expect = 6e-13
 Identities = 25/127 (19%), Positives = 44/127 (34%)

Query: 116 PPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPP 175
           P  ++     +    P+ P A +P  +        P P++      S P+ PP   PP P
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAP 425

Query: 176 SSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPG 235
            ++P   +P A  A  P+ V   P          +A     +   +    +    + P  
Sbjct: 426 VAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAA 485

Query: 236 IPVPSTE 242
             +  TE
Sbjct: 486 ARLTPTE 492

Length = 618

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 69.3 bits (170), Expect = 6e-13
 Identities = 30/135 (22%), Positives = 43/135 (31%), Gaps = 5/135 (3%)

Query: 8   PPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSS 67
           P            ++  T +                P   P ++   PS P+     SS 
Sbjct: 148 PNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSP 207

Query: 68  PPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSP 127
             +S PP  S   +  PP S   P+ P+  P   +PPPP          PP ST  P  P
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPV-----QQVPPLSTAKPTPP 262

Query: 128 PSPPSDPPANSPPPS 142
            +  +  P       
Sbjct: 263 SASATPAPIGGITLD 277

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 70.6 bits (173), Expect = 6e-13
 Identities = 43/246 (17%), Positives = 68/246 (27%), Gaps = 37/246 (15%)

Query: 1   MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS 60
           ++A +    AA   +P    +   T +  PP +       P PP +              
Sbjct: 399 VTAVTGAAGAA--LAPKAAAAAAATRAEAPPAA-------PAPPATADRGDDAADGD--- 446

Query: 61  NPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSS 120
             P  +   A +   S        P +       AS+P + +PP     P  R+  P ++
Sbjct: 447 -APVPAKANARASADSRCDERDAQPPADS---GSASAPASDAPPDAAFEPAPRAAAPSAA 502

Query: 121 TPPPNSPPSPPSDPPANS--PPPSNPPSNLPPPPPSSVEPPKR----------------- 161
           TP        P+           + P     PP P++  P  R                 
Sbjct: 503 TPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMR 562

Query: 162 --SPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSP 219
             S           P ++      P AP        P     T   P +  A     +  
Sbjct: 563 VSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAES 622

Query: 220 NSPPPP 225
              PPP
Sbjct: 623 RGAPPP 628

Length = 830

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 70.3 bits (173), Expect = 9e-13
 Identities = 25/151 (16%), Positives = 36/151 (23%), Gaps = 2/151 (1%)

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTP 122
           P +  P    PP S+ P AS   T++P     A       PPPP S P      P   T 
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTA-AVAPPQAPAVPPPPASAPQQAPAVPLPETT 419

Query: 123 PPNSPPSPP-SDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPK 181
                           +    + P+      P +    + +     P      P+     
Sbjct: 420 SQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAY 479

Query: 182 NSPPAPIAVPPSNVPPPPTQTPPTPASPIAP 212
                            P            P
Sbjct: 480 RWKATNPVEVKKEPVATPKALKKALEHEKTP 510

Length = 647

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 69.9 bits (172), Expect = 1e-12
 Identities = 27/154 (17%), Positives = 44/154 (28%), Gaps = 12/154 (7%)

Query: 36  PKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPA 95
           P +  P P V         P+  A      ++  A     + PPP ++ P  +P    P 
Sbjct: 361 PAAPLPEPEVPPQSA---APAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPE 417

Query: 96  SSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSS 155
           ++   ++    +      +    S       P +     P NS          P P    
Sbjct: 418 TTSQLLAARQQLQRAQGATKAKKS------EPAAASRARPVNSALERLASVR-PAPSALE 470

Query: 156 VEPPKRSPPSVPPQNPP--PPPSSSPPKNSPPAP 187
             P K+        NP        + PK    A 
Sbjct: 471 KAPAKKEAYRWKATNPVEVKKEPVATPKALKKAL 504

Length = 647

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 69.5 bits (170), Expect = 1e-12
 Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 10/101 (9%)

Query: 54  PPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTR 113
           P   P    PT+++P    P   +P P++ P  ++    PP       + PPPV      
Sbjct: 362 PVPAPQPAKPTAAAPSPVRP---TPAPSTRPKAAAAANIPPKEPVRETATPPPV------ 412

Query: 114 SPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPS 154
            PP P + P P++P S P    A  P    P    P PP  
Sbjct: 413 -PPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKE 452

Length = 585

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 28/135 (20%), Positives = 46/135 (34%), Gaps = 9/135 (6%)

Query: 93  PPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPP 152
           P A++             P  + P  +      + P+P + P A +  P+ PP+  PP P
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAP 425

Query: 153 PSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAP 212
            +          + P   P   P++       PAP A         P +  P PA   A 
Sbjct: 426 VA------APAAAAPAAAPAAAPAAVAL---APAPPAQAAPETVAIPVRVAPEPAVASAA 476

Query: 213 RPSNSSPNSPPPPST 227
               ++P +     T
Sbjct: 477 PAPAAAPAAARLTPT 491

Length = 618

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 69.1 bits (169), Expect = 2e-12
 Identities = 42/232 (18%), Positives = 66/232 (28%), Gaps = 24/232 (10%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
           AP     AA + +  PP +  P  +           +P P   +   +         + P
Sbjct: 411 APKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQP 470

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTP 122
           P  S   AS+P + +PP A+  P         A+         P +     +P   +   
Sbjct: 471 PADSGS-ASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPA 529

Query: 123 PPNSPPSPPSDPPA-----------------------NSPPPSNPPSNLPPPPPSSVEPP 159
           P   PP+P +  PA                            +        P  +     
Sbjct: 530 PEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAA 589

Query: 160 KRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIA 211
            R    VP          +PP  +  A  A      PPP    PP    P++
Sbjct: 590 PRVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPPPWEDIPPDDYVPLS 641

Length = 830

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 69.1 bits (170), Expect = 2e-12
 Identities = 28/157 (17%), Positives = 44/157 (28%), Gaps = 9/157 (5%)

Query: 91  PSPPASSP--PTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNL 148
           P+ P   P  P  S  P  S   T +P    + P   + P PP+  P  +P    P    
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPE--- 417

Query: 149 PPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPAS 208
                 +     +            P ++S  +    A   +      P   +  P    
Sbjct: 418 TTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKE 477

Query: 209 PIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTP 245
               + +N       P +T    P         E TP
Sbjct: 478 AYRWKATNPVEVKKEPVAT----PKALKKALEHEKTP 510

Length = 647

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 68.5 bits (168), Expect = 4e-12
 Identities = 41/204 (20%), Positives = 60/204 (29%), Gaps = 12/204 (5%)

Query: 59  ASNPPTSSSPPASSPPTS--SPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPP 116
               P ++       P S   P  A+ P   + P +P A +P   +  P  ++       
Sbjct: 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV 647

Query: 117 PPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPS 176
                 P +      SD     P             P++  P         P    P   
Sbjct: 648 AAPEHHPKHVAVPDASDGGDGWPAK------AGGAAPAAPPPAPAPAAPAAPAGAAPAQP 701

Query: 177 SSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGI 236
           +  P  +PPA  A  P+  PP   Q     AS  +P   +  P  P P      +  P  
Sbjct: 702 APAPAATPPAGQADDPAAQPPQAAQG----ASAPSPAADDPVPLPPEPDDPPDPAGAPAQ 757

Query: 237 PVPSTENTPGNGTNPSSPESSSSP 260
           P P     P      + P S  S 
Sbjct: 758 PPPPPAPAPAAAPAAAPPPSPPSE 781

Length = 824

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 67.9 bits (166), Expect = 5e-12
 Identities = 57/250 (22%), Positives = 70/250 (28%), Gaps = 39/250 (15%)

Query: 2   SAPSPGPPAANSSSPPPP-------VSNPPTISPPPPV-SNPPKSSPPPPPVSKPPTTSP 53
              S      ++ SP              P + P P +    PK  P PP   +      
Sbjct: 88  GPDSDLSQKTSTFSPCQSGYEASTDPEYIPDLQPDPSLWGTAPKPEPQPPQAPESQPQPQ 147

Query: 54  PPS-------------PPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPT 100
            P+                   P    PP    P   PP  +  P   PP  PP      
Sbjct: 148 TPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGY---- 203

Query: 101 ISPPPPVSNPPTRSPP-----PPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSS 155
             P PP  +P    P      P  +   P  PP  P  PP    P     S   PPPP  
Sbjct: 204 --PQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPP-- 259

Query: 156 VEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPS 215
            +PP++      PQ  PPP          P        N P PP Q P        P+  
Sbjct: 260 PQPPQQQQQPPQPQAQPPP---QNQPTPHPGLPQ--GQNAPLPPPQQPQLLPLVQQPQGQ 314

Query: 216 NSSPNSPPPP 225
              P      
Sbjct: 315 QRGPQFREQL 324

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 68.0 bits (167), Expect = 5e-12
 Identities = 25/146 (17%), Positives = 40/146 (27%), Gaps = 3/146 (2%)

Query: 70  ASSPPTSSPPPASNPPTSSPPPSPPAS-SPPTISPPPPVSNPPTRSPPPPSSTPPPNSPP 128
           A  P    P P   P +++P  S  A+ +P     PP     P      P   P    P 
Sbjct: 358 AFHPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPE 417

Query: 129 SPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPI 188
           +      A         +        +     R   S   +     P+ S  + +P    
Sbjct: 418 TTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKE 477

Query: 189 AVP--PSNVPPPPTQTPPTPASPIAP 212
           A     +N      +   TP +    
Sbjct: 478 AYRWKATNPVEVKKEPVATPKALKKA 503

Length = 647

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 67.5 bits (165), Expect = 7e-12
 Identities = 48/242 (19%), Positives = 55/242 (22%), Gaps = 20/242 (8%)

Query: 24  PTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASN 83
                          SP           S  P       P  S    +  P   PP A  
Sbjct: 86  SVGPDSDLSQKTSTFSP----CQSGYEASTDPEYIPDLQPDPSLWGTAPKPEPQPPQA-- 139

Query: 84  PPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPP--SPPSDPPANSPPP 141
                  P P   +   +S     +    R   P    PP    P   PP         P
Sbjct: 140 ---PESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGP 196

Query: 142 SNPPSNLPPPPPSSVEPPK-----RSPPSVPPQNPPPPPSSSPPKN----SPPAPIAVPP 192
              P   P PP    E  +      +P   P Q P PP     P        P      P
Sbjct: 197 PEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMP 256

Query: 193 SNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPS 252
              P PP Q    P     P P N     P  P  +    PP                  
Sbjct: 257 PPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQR 316

Query: 253 SP 254
            P
Sbjct: 317 GP 318

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 67.0 bits (164), Expect = 8e-12
 Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 15/132 (11%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
             P+    AA +++P    +  P  +  P  +      P  PP + PP    P + PA+ 
Sbjct: 379 KTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASA---PAAPPAAAPP---APVAAPAAA 432

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
            P        + P ++P   +  P      +P   + P    P P     + +P P ++ 
Sbjct: 433 APA-------AAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEP--AVASAAPAPAAAP 483

Query: 122 PPPNSPPSPPSD 133
                 P+   D
Sbjct: 484 AAARLTPTEEGD 495

Length = 618

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 66.5 bits (163), Expect = 1e-11
 Identities = 30/131 (22%), Positives = 44/131 (33%), Gaps = 10/131 (7%)

Query: 79  PPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANS 138
             A      +      A++ P  +P P  + P   + P P++ P P   P+P   PP+ +
Sbjct: 386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPA 445

Query: 139 PPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPP 198
                  +  PPP  +    P           P P  +  P     PAP A P     P 
Sbjct: 446 GNAPAGGAPSPPPAAAPSAQPA----------PAPAAAPEPTAAPAPAPPAAPAPAAAPA 495

Query: 199 PTQTPPTPASP 209
               P  PA  
Sbjct: 496 APAAPAAPAGA 506

Length = 824

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 66.4 bits (163), Expect = 1e-11
 Identities = 29/159 (18%), Positives = 44/159 (27%), Gaps = 6/159 (3%)

Query: 1   MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS 60
              P P  P     S  P  S   T +P   V+ P   + PPPP S P      P P  +
Sbjct: 363 APLPEPEVPPQ---SAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETT 419

Query: 61  NPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSS 120
           +   ++         ++    S P  +S    P  S+   ++   P   P      P   
Sbjct: 420 SQLLAARQQLQRAQGATKAKKSEPAAASRAR-PVNSALERLASVRPA--PSALEKAPAKK 476

Query: 121 TPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPP 159
                   +P          P      L       +   
Sbjct: 477 EAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAK 515

Length = 647

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 64.8 bits (158), Expect = 1e-11
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 375 LGEGGFGSVYKGYL----PDGRE--VAIKQLKIGGGQGERE-FKAEVEIISRIHHRHLVS 427
           LGEG FG V+ G      P+  +  VA+K LK       R+ F+ E E+++   H ++V 
Sbjct: 13  LGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVK 72

Query: 428 LVGYCISDDRRLLIYDYVPNNTL--YFHLHG 456
             G C   D  +++++Y+ +  L  +   HG
Sbjct: 73  FYGVCTEGDPPIMVFEYMEHGDLNKFLRSHG 103

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 28/124 (22%), Positives = 40/124 (32%)

Query: 35  PPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPP 94
           P    P           +              +  + S P SS P   + P+    PS P
Sbjct: 148 PNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSP 207

Query: 95  ASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPS 154
           + S    +P    S+ P  SP  P++  PP  P +PP  P    PP S      P    +
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267

Query: 155 SVEP 158
               
Sbjct: 268 PAPI 271

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 32/105 (30%), Positives = 44/105 (41%), Gaps = 3/105 (2%)

Query: 6   PGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTS 65
             P +A+ S PP      P+   PP   + P  S  PP  S   + +PPPSP     PT+
Sbjct: 177 ADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPE---SPTN 233

Query: 66  SSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNP 110
            SPP        PP    PP S+  P+PP++S           + 
Sbjct: 234 PSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLDD 278

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 31/131 (23%), Positives = 41/131 (31%), Gaps = 9/131 (6%)

Query: 30  PPVSNPPK--------SSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPA 81
            P   PP          +      S P   + P S   S+PP+SS    S P     P +
Sbjct: 147 DPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSS 206

Query: 82  SNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPP 141
            +  +  P PS   S  P  SP  P +NP     P     PP    P   +  P      
Sbjct: 207 PSDSSLPPAPSSFQSDTPPPSPESP-TNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSAS 265

Query: 142 SNPPSNLPPPP 152
           + P        
Sbjct: 266 ATPAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 65.3 bits (159), Expect = 4e-11
 Identities = 56/240 (23%), Positives = 73/240 (30%), Gaps = 24/240 (10%)

Query: 42   PPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPP----------- 90
            P     P      P P    PP   +PPA S    +  P         P           
Sbjct: 2483 PAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWIRGLEE 2542

Query: 91   -PSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPP-PSNPPSNL 148
              S  A  PP   PP      P RS PPP   P P+ P         ++PP  + P + +
Sbjct: 2543 LASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPV 2602

Query: 149  PPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPAS 208
                      P    P       PPPPS SP  N P            PPP +    PA 
Sbjct: 2603 DDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPT----VPPPERPRDDPAP 2658

Query: 209  PIAPRPSNSS-------PNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPS 261
                RP  +         +SPP    +R + P    + S  + P     P     +   +
Sbjct: 2659 GRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSA 2718

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 65.0 bits (159), Expect = 4e-11
 Identities = 30/138 (21%), Positives = 54/138 (39%), Gaps = 11/138 (7%)

Query: 54  PPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTR 113
             +  A  P  ++   A++ P ++P PA+  P ++  P+P A+  P  +P          
Sbjct: 386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAP---------- 435

Query: 114 SPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPP 173
             P P+   P  + P+  +  P  +  PS  P+  P   P     P  +PP+ P     P
Sbjct: 436 -APAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAP 494

Query: 174 PPSSSPPKNSPPAPIAVP 191
              ++P   +     A  
Sbjct: 495 AAPAAPAAPAGADDAATL 512

Length = 824

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 65.3 bits (160), Expect = 4e-11
 Identities = 30/167 (17%), Positives = 47/167 (28%), Gaps = 13/167 (7%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
           +AP P P     S+ P   +   T +P   V+ P   + PPPP S P   +P    P   
Sbjct: 362 AAPLPEPEVPPQSAAPAASA-QATAAPTAAVAPPQAPAVPPPPASAPQQ-APAVPLP--- 416

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
             TS    A      +        +     S        +     V   P+     P+  
Sbjct: 417 ETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKK 476

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPP 168
                  + P +               P     ++E  K +P     
Sbjct: 477 EAYRWKATNPVEVKKEPVAT-------PKALKKALEHEK-TPELAAK 515

Length = 647

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 63.0 bits (154), Expect = 4e-11
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 5/83 (6%)

Query: 373 NLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQGE--REFKAEVEIISRIHHRHLVSLV 429
            LLG G FGSVY     D G  +A+K +++ G   E     + E+ I+S + H ++V   
Sbjct: 6   ELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYY 65

Query: 430 GYCISDDRR-LLIY-DYVPNNTL 450
           G    +++  L I+ +YV   +L
Sbjct: 66  GSERDEEKNTLNIFLEYVSGGSL 88

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 63.2 bits (154), Expect = 5e-11
 Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 8/86 (9%)

Query: 373 NLLGEGGFGSVYKG-YLPD----GREVAIKQLKI-GGGQGEREFKAEVEIISRIHHRHLV 426
             LGEG FG V    Y P     G +VA+K L   G  Q   +F+ E+EI+  + H ++V
Sbjct: 10  KQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIV 69

Query: 427 SLVGYCISDDRR--LLIYDYVPNNTL 450
              G C     R   LI +Y+P+ +L
Sbjct: 70  KYKGVCEKPGGRSLRLIMEYLPSGSL 95

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 64.5 bits (157), Expect = 6e-11
 Identities = 49/244 (20%), Positives = 76/244 (31%), Gaps = 38/244 (15%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSP----PPPPVSKPPTTSPPPSP 57
           +A    P  A +++     S        PP  +   S+P    PP    +P   +  PS 
Sbjct: 442 AADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSA 501

Query: 58  PASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPT----------------- 100
                   +  PA++    +P  A+ P   + PP+P A++P                   
Sbjct: 502 ATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGM 561

Query: 101 --------------ISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANS-PPPSNPP 145
                              P + P   +P      P P +  +    PP  +        
Sbjct: 562 RVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAE 621

Query: 146 SNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPP--APIAVPPSNVPPPPTQTP 203
           S   PPP   + P    P S       P     P  +S P    +A  P++ P PP  T 
Sbjct: 622 SRGAPPPWEDIPPDDYVPLSADEGFGGPDDGFVPVFDSGPDDVRVAPKPADAPAPPVDTR 681

Query: 204 PTPA 207
           P P 
Sbjct: 682 PLPP 685

Length = 830

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 63.2 bits (154), Expect = 7e-11
 Identities = 35/128 (27%), Positives = 45/128 (35%), Gaps = 12/128 (9%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
           A      + NS           + S PP  S    S P PP     P+ S  P  P+   
Sbjct: 161 ADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPS--S 218

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTP 122
             S +PP S    ++P        S PP       PP    PP  +  PT  PP  S+TP
Sbjct: 219 FQSDTPPPSPESPTNP--------SPPPGPAAPPPPPVQQVPPLSTAKPT--PPSASATP 268

Query: 123 PPNSPPSP 130
            P    + 
Sbjct: 269 APIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 64.2 bits (157), Expect = 8e-11
 Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 3/125 (2%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
               G   A +++ P   +  P  +P P  + P  ++ P P  +  P  +P P+P    P
Sbjct: 385 LGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPA---P 441

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTP 122
           P+ +    +    S PP A+     +P P+         +P PP +  P  +P  P++  
Sbjct: 442 PSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPA 501

Query: 123 PPNSP 127
            P   
Sbjct: 502 APAGA 506

Length = 824

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 62.8 bits (153), Expect = 9e-11
 Identities = 32/130 (24%), Positives = 43/130 (33%), Gaps = 5/130 (3%)

Query: 123 PPNSPPSPPSDPPANSPPPSNPPSNLP-----PPPPSSVEPPKRSPPSVPPQNPPPPPSS 177
            PN  P    +        +N  ++ P     P   S  +PP  SP      +PP  PSS
Sbjct: 147 DPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSS 206

Query: 178 SPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIP 237
               + PPAP +      PP P         P    P        PP ST + +PP    
Sbjct: 207 PSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASA 266

Query: 238 VPSTENTPGN 247
            P+       
Sbjct: 267 TPAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 63.5 bits (155), Expect = 1e-10
 Identities = 25/127 (19%), Positives = 45/127 (35%)

Query: 40  PPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPP 99
            P          +P  +P  +    +++   +      P PA  P  + P P+  A +  
Sbjct: 393 APAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGG 452

Query: 100 TISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPP 159
             SPPP  +     +P P ++  P  +P   P   PA +  P+ P +   P         
Sbjct: 453 APSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATL 512

Query: 160 KRSPPSV 166
           +   P +
Sbjct: 513 RERWPEI 519

Length = 824

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 63.7 bits (155), Expect = 1e-10
 Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 27  SPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPT 86
             P P    P ++ P P    P  ++ P +  A+N P       ++ P   PP    PP 
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPV 421

Query: 87  SSPPPSPPASSPPTISPPPPVSNPPTRSPPPP 118
              P S P  +   I    PV   P  +PP P
Sbjct: 422 PHTPESAPKLTRAAI----PVDEKPKYTPPAP 449

Length = 585

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 63.4 bits (154), Expect = 1e-10
 Identities = 55/219 (25%), Positives = 76/219 (34%), Gaps = 13/219 (5%)

Query: 24  PTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASN 83
           P+   PP  S+      P P     P     PSPP    P         P +        
Sbjct: 324 PSQRVPPKESDAADGPKPVPTKPVTP---EAPSPPIEEEPPQPKAVVPRPLSPYTAYEDL 380

Query: 84  PPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSN 143
            P +SP P+PP+SSP +      V+ P       PS     N P   P+   A    P +
Sbjct: 381 KPPTSPIPTPPSSSPASSKSVDAVAKPAE-PDVVPSPGSASNVPEVEPAQVEAKKTRPLS 439

Query: 144 P---------PSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSN 194
           P         P++  P  P+ V P   S  SVP      P +++    +PP     P S 
Sbjct: 440 PYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSP 499

Query: 195 VPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPP 233
                   PPT  SP AP    +  ++         +PP
Sbjct: 500 YAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPP 538

Length = 576

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 62.9 bits (153), Expect = 2e-10
 Identities = 41/201 (20%), Positives = 55/201 (27%), Gaps = 11/201 (5%)

Query: 36  PKSSPPPPPVSKPPTTSPPPSP-PASNPPTSSSPPASSPPTSSPPPASNPPTSSPP-PSP 93
           P +  P PP      TS P  P P   P      P +       P     PT+ P  P+ 
Sbjct: 90  PSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAY 149

Query: 94  PASSPPTISPPPPVSNPP--TRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPP 151
                P   P           R   PP +     +  +P  +          P  +    
Sbjct: 150 QQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRR 209

Query: 152 PPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIA 211
                 P    P       P PPP +       P P     + V P     P        
Sbjct: 210 DYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRPSAP-------G 262

Query: 212 PRPSNSSPNSPPPPSTKRLSP 232
           P  +  +P   P   T RL+P
Sbjct: 263 PLAAQPAPAPGPGEPTARLNP 283

Length = 617

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 62.3 bits (152), Expect = 3e-10
 Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 2/125 (1%)

Query: 49  PTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVS 108
                  +P A+ P  +++ PA++P  ++  PA+    +      PA +P     PP  +
Sbjct: 386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPA 445

Query: 109 NPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPP 168
                   P  S PP  +P + P+  PA +P P+  P+  PP  P+    P        P
Sbjct: 446 GNAPAGGAP--SPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAP 503

Query: 169 QNPPP 173
                
Sbjct: 504 AGADD 508

Length = 824

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 62.6 bits (153), Expect = 3e-10
 Identities = 14/83 (16%), Positives = 30/83 (36%)

Query: 52  SPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPP 111
            P  +   +    +++  AS+P  +    A   P  +PP +   ++PP  +     +  P
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Query: 112 TRSPPPPSSTPPPNSPPSPPSDP 134
              P   ++  P  +       P
Sbjct: 97  AAPPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 61.4 bits (149), Expect = 4e-10
 Identities = 23/93 (24%), Positives = 30/93 (32%), Gaps = 4/93 (4%)

Query: 15  SPPPPVSNPPTISPPPPVS-NPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSP 73
             P P    PT + P PV   P  S+ P    +       P    A+ PP    P A   
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPV 421

Query: 74  PTSSPPPASNPPTSSPPPSPPASSPPTISPPPP 106
           P +          + P    P  +PP    PP 
Sbjct: 422 PHTPESAPKLTRAAIPVDEKPKYTPP---APPK 451

Length = 585

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 61.5 bits (150), Expect = 5e-10
 Identities = 33/193 (17%), Positives = 47/193 (24%), Gaps = 8/193 (4%)

Query: 75  TSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDP 134
              P P +      P P+          P  P + P   + P P+      +  S    P
Sbjct: 587 VVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAA-PAAPAAPAPAGAAAAPAEASAAPAP 645

Query: 135 PANSPPPSNPPSNLPPPP-PSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPS 193
              +P        +P         P K    +     P P P++             P  
Sbjct: 646 GVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAP 705

Query: 194 NVPPPPTQ------TPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGN 247
              PP  Q       PP  A   +     +    P PP       P G P          
Sbjct: 706 AATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPA 765

Query: 248 GTNPSSPESSSSP 260
                +     SP
Sbjct: 766 PAAAPAAAPPPSP 778

Length = 824

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 61.4 bits (149), Expect = 5e-10
 Identities = 25/98 (25%), Positives = 32/98 (32%), Gaps = 6/98 (6%)

Query: 104 PPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSP 163
           P P   P   +   PS   P  +P + P    A + PP  P      PPP    P     
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPV 421

Query: 164 PSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQ 201
           P  P   P    ++ P       P   PP    PP  +
Sbjct: 422 PHTPESAPKLTRAAIP---VDEKPKYTPP---APPKEE 453

Length = 585

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 61.1 bits (149), Expect = 6e-10
 Identities = 30/82 (36%), Positives = 41/82 (50%)

Query: 108 SNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVP 167
           ++   ++PPPP  +PPP +P  P   P A +PPP+ PP        SS  P +    S P
Sbjct: 517 ASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSP 576

Query: 168 PQNPPPPPSSSPPKNSPPAPIA 189
           P   P  P+ SP K+S P  I 
Sbjct: 577 PPPIPEEPTPSPTKDSSPEEID 598

Length = 620

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 59.4 bits (144), Expect = 7e-10
 Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 7/87 (8%)

Query: 375 LGEGGFGSVYKGYL--PDGRE----VAIKQLK-IGGGQGEREFKAEVEIISRIHHRHLVS 427
           LGEG FG VYKG L  P+ R     VAIK LK     + ++EF+ E E++S + H ++V 
Sbjct: 13  LGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVC 72

Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHL 454
           L+G C  +    ++++Y+ +  L+  L
Sbjct: 73  LLGVCTKEQPTCMLFEYLAHGDLHEFL 99

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 59.0 bits (143), Expect = 9e-10
 Identities = 24/68 (35%), Positives = 38/68 (55%)

Query: 369 FADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSL 428
           F  +  LG G FG V++G   +   VAIK LK      +++F+ EV+ + R+ H+HL+SL
Sbjct: 8   FTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISL 67

Query: 429 VGYCISDD 436
              C   +
Sbjct: 68  FAVCSVGE 75

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 60.8 bits (148), Expect = 1e-09
 Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 1/119 (0%)

Query: 29  PPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSS 88
             P +  P ++   P  +  P  + P +  A  P  +  P  +  P  +PP  +    + 
Sbjct: 392 GAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAG 451

Query: 89  PPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSN 147
             PSPP ++ P+  P P  +  P  +  P  + PP    P+     PA    P+     
Sbjct: 452 GAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPA-PPAAPAPAAAPAAPAAPAAPAGADDA 509

Length = 824

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 60.3 bits (147), Expect = 1e-09
 Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 6/98 (6%)

Query: 92  SPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPP 151
            P +++ PT +     +     +  P +  P   +P  P +  PA  P P+         
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAA-----AAA 91

Query: 152 PPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIA 189
             ++   P  +  +  P         +P +    A +A
Sbjct: 92  AAAAPAAPPAAAAAAAPAAAAVEDEVTPLR-GAAAAVA 128

Length = 1228

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 5/66 (7%)

Query: 375 LGEGGFGSVYKGY--LPDGRE--VAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLV 429
           LG G FGSV KG   +  G+E  VA+K LK      G++EF  E  +++++ H  +V L+
Sbjct: 3   LGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLI 62

Query: 430 GYCISD 435
           G C  +
Sbjct: 63  GVCKGE 68

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 60.0 bits (146), Expect = 2e-09
 Identities = 26/118 (22%), Positives = 41/118 (34%), Gaps = 4/118 (3%)

Query: 42  PPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTI 101
                     S   + PA+ P  +++ PA++      P A+  P   P P+P  + P   
Sbjct: 390 GAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAA--PAPAAAPQPA--PAPAPAPAPPSPA 445

Query: 102 SPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPP 159
              P    P       PS+ P P    +P         PP+ P     P  P++   P
Sbjct: 446 GNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAP 503

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 60.0 bits (146), Expect = 2e-09
 Identities = 24/127 (18%), Positives = 40/127 (31%), Gaps = 2/127 (1%)

Query: 7   GPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSS 66
               A  +  P   +     + P     P  ++P       P     P   PA  P  + 
Sbjct: 384 RLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPA--PAPAP 441

Query: 67  SPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNS 126
             PA + P    P        S  P+P  ++ P  +  P  + P   +P    + P   +
Sbjct: 442 PSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPA 501

Query: 127 PPSPPSD 133
            P+   D
Sbjct: 502 APAGADD 508

Length = 824

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 59.8 bits (145), Expect = 2e-09
 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 3/94 (3%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
             P+P P    +++P P    P   + P        + PP  PV +  T  P P  P + 
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAA--AAANIPPKEPVRETATPPPVPPRPVA- 418

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPA 95
           PP   +P ++   T +  P    P  +PP  P  
Sbjct: 419 PPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKE 452

Length = 585

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 59.8 bits (145), Expect = 2e-09
 Identities = 30/140 (21%), Positives = 47/140 (33%), Gaps = 14/140 (10%)

Query: 42  PPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTI 101
                      P  + PA+ P     P A++  + SP  +S       P +P +++ P  
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQ----PSAAAAASPSPSQSSAAA---QPSAPQSATQPAG 422

Query: 102 SPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKR 161
           +PP    +PP   P  P ST P    P+          P S   S  P     S   P +
Sbjct: 423 TPPTVSVDPPAAVPVNPPSTAPQAVRPAQF--KEEKKIPVSKVSSLGP-----STLRPIQ 475

Query: 162 SPPSVPPQNPPPPPSSSPPK 181
                   N    P+ +  +
Sbjct: 476 EKAEQATGNIKEAPTGTQKE 495

Length = 614

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 59.4 bits (144), Expect = 2e-09
 Identities = 27/120 (22%), Positives = 39/120 (32%), Gaps = 12/120 (10%)

Query: 46  SKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPP 105
            K    S    P     P  + P A+  P+++   + +P  SS    P A        P 
Sbjct: 364 QKGDDASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSA--------PQ 415

Query: 106 PVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPP--SSVEPPKRSP 163
             + P     PP  S  PP + P  P      +  P+        P    SS+ P    P
Sbjct: 416 SATQPAGT--PPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRP 473

Length = 614

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 58.0 bits (140), Expect = 2e-09
 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           +G G FG V+ GY  + R+VAIK ++  G   E +F  E +++ ++ H  LV L G C  
Sbjct: 12  IGSGQFGLVWLGYWLEKRKVAIKTIR-EGAMSEEDFIEEAQVMMKLSHPKLVQLYGVCTE 70

Query: 435 DDRRLLIYDYVPNNTLYFHLHGK 457
                L+++++ +  L  +L  +
Sbjct: 71  RSPICLVFEFMEHGCLSDYLRAQ 93

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 7/87 (8%)

Query: 375 LGEGGFGSVYKGY-LPDGR----EVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSL 428
           LG G FG+VYKG  +P+G      VAIK L+     +  +E   E  +++ + H H+V L
Sbjct: 15  LGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRL 74

Query: 429 VGYCISDDRRLLIYDYVPNNTLYFHLH 455
           +G C+S  +  LI   +P   L  ++ 
Sbjct: 75  LGICLS-SQVQLITQLMPLGCLLDYVR 100

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 59.1 bits (144), Expect = 3e-09
 Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 3/80 (3%)

Query: 66  SSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPN 125
                ++P  ++   A+     +  P+  A + P  +PP         +PP P++     
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAA---AAPAAPPKPAAAAAAA 93

Query: 126 SPPSPPSDPPANSPPPSNPP 145
           + P+ P    A + P +   
Sbjct: 94  AAPAAPPAAAAAAAPAAAAV 113

Length = 1228

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 58.5 bits (142), Expect = 5e-09
 Identities = 25/121 (20%), Positives = 39/121 (32%)

Query: 104 PPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSP 163
                     +  P ++   P + P+P +  PA +  P+   +  P P P+    P    
Sbjct: 386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPA 445

Query: 164 PSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPP 223
            + P    P PP ++ P   P    A  P     P    P  PA   AP    +      
Sbjct: 446 GNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAG 505

Query: 224 P 224
            
Sbjct: 506 A 506

Length = 824

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 58.3 bits (141), Expect = 5e-09
 Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 3/95 (3%)

Query: 75  TSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDP 134
              P P    PT++ P     +  P+  P    +       P   +  PP  PP P + P
Sbjct: 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPP 420

Query: 135 PANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQ 169
               P        L        E PK +PP+ P +
Sbjct: 421 V---PHTPESAPKLTRAAIPVDEKPKYTPPAPPKE 452

Length = 585

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 58.3 bits (141), Expect = 5e-09
 Identities = 41/202 (20%), Positives = 58/202 (28%), Gaps = 16/202 (7%)

Query: 4   PSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPP 63
           PS G PA     P    ++ P +  P     P +    P    +PP        P + P 
Sbjct: 90  PSAGEPAPPP--PHARRTSEPELPRPGR--RPYEGYGGPRADDRPPGLPRQDQLPTARP- 144

Query: 64  TSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSP--PPPSST 121
              + PA       P                   PP      P S  P +     P  + 
Sbjct: 145 ---AYPAYQQR-PEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAG 200

Query: 122 PPPNSPPSPPSDPPA-NSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPP 180
            P         D P  +   P    ++ P PPP +    +  P      + P  P     
Sbjct: 201 RPEYDQRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRPS- 259

Query: 181 KNSPPAPIAVPPSNVPPPPTQT 202
               P P+A  P+  P P   T
Sbjct: 260 ---APGPLAAQPAPAPGPGEPT 278

Length = 617

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 58.0 bits (140), Expect = 5e-09
 Identities = 32/128 (25%), Positives = 46/128 (35%), Gaps = 19/128 (14%)

Query: 20  VSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPP--PSPPASNPPTSSSPPASSPPTSS 77
           V N   ++P P  S   K   P P + +P     P  P  P + P    SP ++  P   
Sbjct: 374 VRNDGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQ 433

Query: 78  PPPASNPPTSSPPPSPPASSPPTISPPPP--------------VSNPPTRSPPPPSSTPP 123
           PP A + P    PPSP AS+P  ++   P                N   + P   SS+  
Sbjct: 434 PPVARSAPL---PPSPQASAPRNVASGKPGVDLGSWQGKFMNFTRNGSRKQPVQASSSDA 490

Query: 124 PNSPPSPP 131
             +     
Sbjct: 491 AQTGVFEG 498

Length = 620

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 58.0 bits (141), Expect = 7e-09
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 3/85 (3%)

Query: 79  PPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANS 138
           P ++  PT++   +  A+S P  +P       P  +PP       P +PP P +   A +
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAA---AAPAAPPKPAAAAAAAA 94

Query: 139 PPPSNPPSNLPPPPPSSVEPPKRSP 163
            P + P +     P ++    + +P
Sbjct: 95  APAAPPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 58.2 bits (140), Expect = 7e-09
 Identities = 50/232 (21%), Positives = 74/232 (31%), Gaps = 8/232 (3%)

Query: 16  PPPPVSNPPTISPPPPVSNPPKSSPP-PPPVSKPPTTSPPPSPPASNPPTSSSPPASSPP 74
           P  P+   P    P   +     +P  PP V   P               S +   +  P
Sbjct: 627 PLRPIPMRPLRMQPITFNVLVFPTPHQPPQVEITPYKPTWTQIGHIPYQPSPTGANTMLP 686

Query: 75  TSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDP 134
               P    PP  +P P  P ++PP  +  P  +    R P        P +     + P
Sbjct: 687 IQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARP 746

Query: 135 PANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPP-------PSSSPPKNSPPAP 187
           PA +P  + PP+  P         P    P  PPQ PP P       P+  PP  + P  
Sbjct: 747 PAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTS 806

Query: 188 IAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVP 239
           + + P   P     T       +        P+   P + +R +     P P
Sbjct: 807 MQLMPRAAPGQQGPTKQILRQLLTGGVKRGRPSLKKPAALERQAAAGPTPSP 858

Length = 991

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 57.5 bits (139), Expect = 8e-09
 Identities = 39/166 (23%), Positives = 45/166 (27%), Gaps = 8/166 (4%)

Query: 1   MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSP---PPPPVSKPPTTSPPPSP 57
           +    P   AA     PP     P   P PP  +P +  P    P P   P     PP  
Sbjct: 180 LPQGMPPRQAAFPQQGPPE---QPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQL 236

Query: 58  PASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPP--TISPPPPVSNPPTRSP 115
           P   PP              PPP   P     PP P A  PP    +P P +        
Sbjct: 237 PQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPL 296

Query: 116 PPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKR 161
           PPP           P                +       S E  KR
Sbjct: 297 PPPQQPQLLPLVQQPQGQQRGPQFREQLVQLSQQQREALSQEEAKR 342

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 57.5 bits (139), Expect = 8e-09
 Identities = 26/98 (26%), Positives = 32/98 (32%), Gaps = 3/98 (3%)

Query: 114 SPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPP 173
             P P    P  + PSP    PA S  P    +   PP     E     P    P  PP 
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPV 421

Query: 174 PPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIA 211
           P     P+++P    A  P +  P  T   P      A
Sbjct: 422 PH---TPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKA 456

Length = 585

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 57.6 bits (139), Expect = 8e-09
 Identities = 63/228 (27%), Positives = 86/228 (37%), Gaps = 12/228 (5%)

Query: 45  VSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPP 104
           ++K P+   PP    +     +  P   P     P A +PP    PP P A  P  +SP 
Sbjct: 320 LAKIPSQRVPPKESDA-----ADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPY 374

Query: 105 PPVSN--PPTRSPPPPSSTPPPNSPPSPPSDPPA--NSPPPSNPPSNLPPPPPSSVEPPK 160
               +  PPT   P P S+ P +S        PA  +  P     SN+P   P+ VE  K
Sbjct: 375 TAYEDLKPPTSPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKK 434

Query: 161 RSP--PSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIA-PRPSNS 217
             P  P    ++  PP S SP   +  +P     S+VP  P   P T A+  A P P+N 
Sbjct: 435 TRPLSPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANM 494

Query: 218 SPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPSNNGI 265
            P SP         P    P         + TN      +S+P     
Sbjct: 495 RPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALA 542

Length = 576

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 58.0 bits (141), Expect = 8e-09
 Identities = 14/82 (17%), Positives = 30/82 (36%)

Query: 58  PASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPP 117
           P S    +++  A++   S+P  A      + P   P ++    +PP P +     + P 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 118 PSSTPPPNSPPSPPSDPPANSP 139
                   + P+  +     +P
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 56.0 bits (135), Expect = 8e-09
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 8/92 (8%)

Query: 373 NLLGEGGFGSVYKG----YLPDGRE---VAIKQLKIGGGQGER-EFKAEVEIISRIHHRH 424
           N LG G FG VY+G     L  G     VA+K L+ G    E+ EF  E  ++S  +H +
Sbjct: 1   NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPN 60

Query: 425 LVSLVGYCISDDRRLLIYDYVPNNTLYFHLHG 456
           +V L+G C+ ++ + +I + +    L  +L  
Sbjct: 61  IVKLLGVCLLNEPQYIIMELMEGGDLLSYLRD 92

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 58.0 bits (140), Expect = 9e-09
 Identities = 62/243 (25%), Positives = 87/243 (35%), Gaps = 19/243 (7%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPP-------VSKPPTTSPPP 55
           AP+P P     +   P  +   T  PPPP +  P  +  PP           P     PP
Sbjct: 254 APAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAPP 313

Query: 56  SPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSP 115
            PP   P   +                  P    P   P    PT +PP  + +      
Sbjct: 314 DPPPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRH 373

Query: 116 PPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPP 175
            P  ++ P     S      A +P    P  +    P + V      P SVP   P P P
Sbjct: 374 HPKRASLPTRKRRSARH---AATPFARGPGGDDQTRPAAPV------PASVPTPAPTPVP 424

Query: 176 SSSPPKNSPPAPIAVPPSNV--PPPPTQTPPTPASPIA-PRPSNSSPNSPPPPSTKRLSP 232
           +S+PP  + P P A P S+    PPP + PP PA+  A   P +++  +      +R   
Sbjct: 425 ASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRKALDALRERRPPE 484

Query: 233 PPG 235
           PPG
Sbjct: 485 PPG 487

Length = 3151

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 24/90 (26%), Positives = 30/90 (33%), Gaps = 1/90 (1%)

Query: 86  TSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPP 145
              P P P   +    SP  P   P TR     ++  PP  P    + PP   P P  PP
Sbjct: 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPP 420

Query: 146 SNLPPPPPSSVEPPKRSPPSVPPQNPPPPP 175
                P  +        P    P+  PP P
Sbjct: 421 VP-HTPESAPKLTRAAIPVDEKPKYTPPAP 449

Length = 585

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 57.6 bits (140), Expect = 1e-08
 Identities = 17/78 (21%), Positives = 34/78 (43%)

Query: 47  KPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPP 106
            P +T+ P +  A+    +S+P A+    +   PA  PP ++ P +PP  +    +   P
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Query: 107 VSNPPTRSPPPPSSTPPP 124
            + P   +   P++    
Sbjct: 97  AAPPAAAAAAAPAAAAVE 114

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 57.6 bits (140), Expect = 1e-08
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 1/82 (1%)

Query: 42  PPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPP-PSPPASSPPT 100
           P   + P   +   +  AS P  + +  A + P  +PP A+ P     P  +  A++ P 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 101 ISPPPPVSNPPTRSPPPPSSTP 122
             P    +  P  +      TP
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 57.2 bits (139), Expect = 1e-08
 Identities = 19/77 (24%), Positives = 35/77 (45%)

Query: 69  PASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPP 128
           P S+   ++   A+    S+P  +P A +P   +P PP +  P   P P ++     +P 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 129 SPPSDPPANSPPPSNPP 145
           +PP+   A +P  +   
Sbjct: 98  APPAAAAAAAPAAAAVE 114

Length = 1228

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 3/103 (2%)

Query: 86  TSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNS-PPSPPSDPPANSPPPSNP 144
            +S    P     P  + P   + P   +    S +P  +S    P +   A  P  + P
Sbjct: 368 DASGGRGPKQHIKPVFTQP--AAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPP 425

Query: 145 PSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAP 187
             ++ PP    V PP  +P +V P            K S   P
Sbjct: 426 TVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGP 468

Length = 614

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 56.9 bits (137), Expect = 2e-08
 Identities = 47/208 (22%), Positives = 64/208 (30%), Gaps = 7/208 (3%)

Query: 1    MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS 60
            ++ P+      + + PP     PP    PPP    P+  PPP P   PP    P  P A 
Sbjct: 2886 LARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAP 2945

Query: 61   NPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSS 120
                + +   S         A  P   + P        P+   P   + P T       S
Sbjct: 2946 TTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVS 3005

Query: 121  TPPPNSPPSPPSDPPANS------PPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPP 174
            +   +      +DPP  S      PP     S+      S  E          P  P  P
Sbjct: 3006 SWASSLALHEETDPPPVSLKQTLWPPDDTEDSDADSLFDSDSERSDLEALDPLPPEPHDP 3065

Query: 175  PSSSPPKNSPPA-PIAVPPSNVPPPPTQ 201
             +  P   +P A     P S   PPP  
Sbjct: 3066 FAHEPDPATPEAGARESPSSQFGPPPLS 3093

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 56.5 bits (137), Expect = 2e-08
 Identities = 24/111 (21%), Positives = 42/111 (37%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
           +APS    A  ++  P   +     +P P  +  P  +P P P    P  + P     S 
Sbjct: 397 AAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSP 456

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPT 112
           PP ++     +P  ++ P  +  P  +PP +P  ++ P     P       
Sbjct: 457 PPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGAD 507

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 56.5 bits (137), Expect = 2e-08
 Identities = 31/150 (20%), Positives = 51/150 (34%), Gaps = 5/150 (3%)

Query: 94  PASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPP 153
           P++S         +     R      +  P  + PS  +  PA +P P+       P   
Sbjct: 365 PSASDDERGLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAA----PAAA 420

Query: 154 SSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPR 213
           ++  P     P+  P   P PPS +    +  AP   PP+  P       P  A      
Sbjct: 421 AAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSP-PPAAAPSAQPAPAPAAAPEPTAA 479

Query: 214 PSNSSPNSPPPPSTKRLSPPPGIPVPSTEN 243
           P+ + P +P P +       P  P  + + 
Sbjct: 480 PAPAPPAAPAPAAAPAAPAAPAAPAGADDA 509

Length = 824

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 57.1 bits (138), Expect = 2e-08
 Identities = 40/186 (21%), Positives = 58/186 (31%), Gaps = 2/186 (1%)

Query: 55  PSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRS 114
           P PPA+    +    + S        A     +    +  A+      P  P   P T +
Sbjct: 22  PRPPATPGDAADDLLSGSQGQLVSDSA--ELAAVTVVAGAAACDRFEPPTGPPPGPGTEA 79

Query: 115 PPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPP 174
           P   S + P  S  +     PA    P+ P  + P PPP +  P    P   P  +    
Sbjct: 80  PANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLR 139

Query: 175 PSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPP 234
           P  SP      +P A   S             A+     P  ++     PP+    S PP
Sbjct: 140 PVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPP 199

Query: 235 GIPVPS 240
               P 
Sbjct: 200 AAASPR 205

Length = 1352

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 17/121 (14%), Positives = 36/121 (29%)

Query: 141 PSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPT 200
           P+       P    +   P+ + P+  P        +     +  A     P    PP  
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAP 425

Query: 201 QTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSP 260
              P  A+P A   +  +  +  P    + +P            P   +   +P ++ + 
Sbjct: 426 VAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAA 485

Query: 261 S 261
           +
Sbjct: 486 A 486

Length = 618

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 56.8 bits (138), Expect = 2e-08
 Identities = 13/82 (15%), Positives = 30/82 (36%)

Query: 17  PPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTS 76
           P   + P   +     +    ++ P       P  +PP +   + PP  ++  A++   +
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 77  SPPPASNPPTSSPPPSPPASSP 98
           +PP A+     +        +P
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 56.8 bits (138), Expect = 2e-08
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 2/91 (2%)

Query: 5   SPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPT 64
            PG  AA +++     +     +  P    P   +P PP        +PP    A+    
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPA--AAAPAAPPKPAAAAAAAA 94

Query: 65  SSSPPASSPPTSSPPPASNPPTSSPPPSPPA 95
           + + P ++   ++P  A+     +P     A
Sbjct: 95  APAAPPAAAAAAAPAAAAVEDEVTPLRGAAA 125

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 56.4 bits (137), Expect = 2e-08
 Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 2/83 (2%)

Query: 74  PTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSD 133
           P S+  P +    ++   S PA++P   +P  P   P   +   P++ P P +  +  + 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPA--PAPPAAAAPAAPPKPAAAAAAAAA 95

Query: 134 PPANSPPPSNPPSNLPPPPPSSV 156
           P A     +              
Sbjct: 96  PAAPPAAAAAAAPAAAAVEDEVT 118

Length = 1228

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 56.5 bits (137), Expect = 2e-08
 Identities = 21/79 (26%), Positives = 34/79 (43%)

Query: 60  SNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPS 119
            +   S    AS+P   +P P  +PP +   PS P +     +P PP +      P P  
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 120 STPPPNSPPSPPSDPPANS 138
            T P  +PP+  ++ P + 
Sbjct: 421 PTEPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 56.2 bits (135), Expect = 2e-08
 Identities = 63/236 (26%), Positives = 85/236 (36%), Gaps = 4/236 (1%)

Query: 6   PGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTS 65
           PGPP  ++    P     P+ +PP P        PP P  S+    S  P   ++  P  
Sbjct: 271 PGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQ 330

Query: 66  SSPPASSPPTSSPPPASNPPTSSPPPSPPAS--SPPTISPPPPVSNPPTRSPPPPSSTPP 123
                  PP  S P    PPT+  P  P  S   PP +  P P    P+  PPPP+  P 
Sbjct: 331 PPREQPLPPAPSMPHIKPPPTTPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPL 390

Query: 124 PNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNS 183
            + P   P  P A+ PP    P + P     +  P      S+PP+    P S       
Sbjct: 391 SSLPTHHP--PSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPP 448

Query: 184 PPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVP 239
                  P ++   P    PP+  +     P  +S  S PP S    S     P P
Sbjct: 449 QSPFAQHPFTSGGLPAIGPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCAGPGP 504

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 55.8 bits (135), Expect = 3e-08
 Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 1   MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNP-PKSSPPPPPVSKPPTTSPPPSPPA 59
            +A +P    A +++ P   + P   + P P   P P  +PP P  + P   +P P P A
Sbjct: 401 AAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAA 460

Query: 60  SNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPP 105
           +     +  PA++P  ++ P  + P   +P  +P A + P      
Sbjct: 461 APSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506

Length = 824

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 23/88 (26%), Positives = 29/88 (32%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
           S   P  P+       P  S+ P          PP S   P   S PP  + PP PP   
Sbjct: 191 SPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQ 250

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSP 89
            P  S+   + P  S+ P      T   
Sbjct: 251 VPPLSTAKPTPPSASATPAPIGGITLDD 278

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 56.1 bits (136), Expect = 3e-08
 Identities = 15/82 (18%), Positives = 29/82 (35%)

Query: 29  PPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSS 88
           P   + P  ++      +  P  +P    PA+  P   +  A + P      A+     +
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 89  PPPSPPASSPPTISPPPPVSNP 110
            PP+  A++ P  +       P
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 55.5 bits (134), Expect = 4e-08
 Identities = 28/146 (19%), Positives = 47/146 (32%), Gaps = 14/146 (9%)

Query: 130 PPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIA 189
           P +   A +P     P+      P++    + +    P      P +++     P AP A
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPA---AAPAAAASA---PAAPPA 419

Query: 190 VPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPP----PGIPVPSTENTP 245
             P      P    P  A   AP     +P  P   + + ++ P    P   V S    P
Sbjct: 420 AAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479

Query: 246 GNGTNPSSPESSSSPSNNGIGTAGTV 271
                 +   +  +P+  G     TV
Sbjct: 480 A----AAPAAARLTPTEEGDVWHATV 501

Length = 618

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 55.3 bits (134), Expect = 4e-08
 Identities = 19/137 (13%), Positives = 34/137 (24%), Gaps = 6/137 (4%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSS---PPPPPVSKPPTTSPPPSPP 58
           +A      A   +   PP         P        S               T    S P
Sbjct: 384 TAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEP 443

Query: 59  ASNP---PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSP 115
           A+     P +S+    +    +P      P         A++P  +   P  +    +  
Sbjct: 444 AAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKA 503

Query: 116 PPPSSTPPPNSPPSPPS 132
                TP   +  +  +
Sbjct: 504 LEHEKTPELAAKLAAEA 520

Length = 647

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 55.7 bits (135), Expect = 4e-08
 Identities = 11/81 (13%), Positives = 26/81 (32%)

Query: 35  PPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPP 94
              ++P     +     S P + PA+  P + +P   +    + PP      ++      
Sbjct: 39  GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAA 98

Query: 95  ASSPPTISPPPPVSNPPTRSP 115
             +    + P   +     +P
Sbjct: 99  PPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 55.4 bits (134), Expect = 4e-08
 Identities = 23/79 (29%), Positives = 33/79 (41%)

Query: 55  PSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRS 114
           PS   S    +S+P   +P  +  PP +    S+P     A++P           P    
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 115 PPPPSSTPPPNSPPSPPSD 133
           P  PS TPP N+  +PPS 
Sbjct: 421 PTEPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 55.4 bits (134), Expect = 4e-08
 Identities = 24/81 (29%), Positives = 34/81 (41%)

Query: 129 SPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPI 188
           S  +   A +PPP       P P P   +P   +PP  PP  PP    +S    +     
Sbjct: 514 SGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPAD 573

Query: 189 AVPPSNVPPPPTQTPPTPASP 209
           + PP  +P  PT +P   +SP
Sbjct: 574 SSPPPPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 55.4 bits (134), Expect = 4e-08
 Identities = 24/79 (30%), Positives = 32/79 (40%)

Query: 21  SNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPP 80
           S   T   PPP    P    P PP+ +P  T+PPP+PP   P  + +   +     +   
Sbjct: 516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSS 575

Query: 81  ASNPPTSSPPPSPPASSPP 99
              P    P PSP   S P
Sbjct: 576 PPPPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 55.5 bits (133), Expect = 4e-08
 Identities = 65/239 (27%), Positives = 85/239 (35%), Gaps = 16/239 (6%)

Query: 1   MSAPSPGPPAANSSSPPPP----VSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPS 56
           + AP  GP      + P       S P     P PV +P ++  PP   S  P TS P  
Sbjct: 564 LPAPGLGPLQIQPLTSPTTSQLASSAPSYAQTPWPVPHPSQTPEPPTTQSHIPETSAPRQ 623

Query: 57  PPASNPPTSSSP----PASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPT 112
            P    P    P    P +      P P   P     P  P  +    I   P  +   T
Sbjct: 624 WPMPLRPIPMRPLRMQPITFNVLVFPTPHQPPQVEITPYKPTWTQIGHIPYQPSPTGANT 683

Query: 113 RSPP---PPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQ 169
             P    P +  PPP +P   P  PPA  P  +  P+            P R+ P     
Sbjct: 684 MLPIQWAPGTMQPPPRAPT--PMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAP 741

Query: 170 NPPPPPSSSPPKNSPPAPI---AVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPP 225
               PP+++P +  PPA     A PP+  P  PT  PP  A P   +    +P   PPP
Sbjct: 742 GRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPP 800

Length = 991

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 54.0 bits (130), Expect = 4e-08
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 374 LLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGERE-FKAEVEIISRIHHRHLVSLVGYC 432
            +G+G FG VYKG L    EVA+K  +       +  F  E EI+ +  H ++V L+G C
Sbjct: 2   KIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVC 61

Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGK 457
           +      ++ + VP  +L   L  K
Sbjct: 62  VQKQPIYIVMELVPGGSLLTFLRKK 86

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 55.0 bits (133), Expect = 5e-08
 Identities = 30/85 (35%), Positives = 35/85 (41%), Gaps = 3/85 (3%)

Query: 37  KSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPAS 96
           +S         PP     P PPA  PP       + PPT  PPP   P  +    + PA 
Sbjct: 513 QSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPP---PTATQASSNAPAQ 569

Query: 97  SPPTISPPPPVSNPPTRSPPPPSST 121
            P   SPPPP+   PT SP   SS 
Sbjct: 570 IPADSSPPPPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 53.4 bits (129), Expect = 5e-08
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 369 FADQNLLGEGGFGSVYKG-YLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVS 427
           F     +G+GGFG VYK  +   G+EVAIK +K+   + + +   E++I+ +  H ++V 
Sbjct: 2   FEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVK 61

Query: 428 LVGYCISDDRRLLI 441
             G        L I
Sbjct: 62  YYG-SYLKKDELWI 74

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 53.6 bits (129), Expect = 5e-08
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 7/84 (8%)

Query: 374 LLGEGGFGSVYK-GYLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSL 428
            LG+G FGSV    Y P     G  VA+K+L+    +  R+F+ E+EI+  + H ++V  
Sbjct: 11  QLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKY 70

Query: 429 VGYCISDDRR--LLIYDYVPNNTL 450
            G C S  RR   L+ +Y+P  +L
Sbjct: 71  KGVCYSAGRRNLRLVMEYLPYGSL 94

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 53.9 bits (130), Expect = 6e-08
 Identities = 28/93 (30%), Positives = 35/93 (37%), Gaps = 1/93 (1%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
             PS  P   +  SPP   S+P   S PP  S+    +PPP P S    + PP       
Sbjct: 186 DPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPP 245

Query: 62  PPTSSSPPASSP-PTSSPPPASNPPTSSPPPSP 93
           PP    PP S+  PT     A+  P        
Sbjct: 246 PPVQQVPPLSTAKPTPPSASATPAPIGGITLDD 278

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.8 bits (132), Expect = 6e-08
 Identities = 22/88 (25%), Positives = 29/88 (32%), Gaps = 8/88 (9%)

Query: 149 PPPPPSSVEPPKRSP--PSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTP 206
           P P P+       SP  P+  P   P   +++      P      P  VPP P   P   
Sbjct: 364 PAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPH 423

Query: 207 ASPIAPR------PSNSSPNSPPPPSTK 228
               AP+      P +  P   PP   K
Sbjct: 424 TPESAPKLTRAAIPVDEKPKYTPPAPPK 451

Length = 585

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 55.3 bits (134), Expect = 6e-08
 Identities = 13/90 (14%), Positives = 26/90 (28%), Gaps = 2/90 (2%)

Query: 27  SPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPT 86
            P    +    ++      S P       +P A  P   ++   ++PP  +   A     
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAA--AAA 94

Query: 87  SSPPPSPPASSPPTISPPPPVSNPPTRSPP 116
           +   P   A++    +        P R   
Sbjct: 95  APAAPPAAAAAAAPAAAAVEDEVTPLRGAA 124

Length = 1228

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.8 bits (132), Expect = 6e-08
 Identities = 32/122 (26%), Positives = 41/122 (33%), Gaps = 7/122 (5%)

Query: 129 SPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPI 188
           S    P  +  P    P+  P P  ++   P  S  S   Q P  P S++ P  +PP   
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQ-PSAPQSATQPAGTPPTVS 428

Query: 189 AVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNG 248
             PP+ VP  P  T P        RP+        P S    S  P    P  E      
Sbjct: 429 VDPPAAVPVNPPSTAPQAV-----RPAQFKEEKKIPVSKVS-SLGPSTLRPIQEKAEQAT 482

Query: 249 TN 250
            N
Sbjct: 483 GN 484

Length = 614

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.8 bits (132), Expect = 6e-08
 Identities = 24/109 (22%), Positives = 34/109 (31%), Gaps = 4/109 (3%)

Query: 7   GPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSS 66
                       PV   P  +P P  +     SP     +  P+     + PA  PPT S
Sbjct: 369 ASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVS 428

Query: 67  SPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSP 115
             P ++ P     P S  P +  P          +S    +  P T  P
Sbjct: 429 VDPPAAVPV---NPPSTAPQAVRPAQFKEEKKIPVSKVSSLG-PSTLRP 473

Length = 614

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 53.9 bits (130), Expect = 6e-08
 Identities = 30/128 (23%), Positives = 36/128 (28%), Gaps = 5/128 (3%)

Query: 55  PSPPASNPPTSSSPPASSPPTSSPPP-ASNPPTSSPPPSPPASSPPTISPPPPVSNPPTR 113
               A            SP     PP AS  P       P A  PP  +P P    P   
Sbjct: 70  RVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQP- 128

Query: 114 SPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPP 173
               P+  P P  P   P  P     P     +  P P   + +P +      P     P
Sbjct: 129 -VQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSA--PQPAQQAFQPAEPVAAPQPEPVAEP 185

Query: 174 PPSSSPPK 181
            P    PK
Sbjct: 186 APVMDKPK 193

Length = 333

>gnl|CDD|217835 pfam03999, MAP65_ASE1, Microtubule associated protein (MAP65/ASE1 family)

 Score = 54.9 bits (132), Expect = 6e-08
 Identities = 27/171 (15%), Positives = 51/171 (29%), Gaps = 8/171 (4%)

Query: 95  ASSPPTISPPPPVSNP-PTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPP 153
           A+   T+  PP  S      S P         +  +P      N    S           
Sbjct: 450 ANKTSTVMEPPYGSTESSVPSTPSTRRNDRNITSNTPSLKRTPNLTKSSLSQEASLISK- 508

Query: 154 SSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVP--PSNVPPPPT---QTPPTPAS 208
           S+    K S P      P  P +S   K +     A     S++  P +   ++P     
Sbjct: 509 STGNTHKHSTPRRLTTLPKLPAASRSSKGNLIRSGANGNASSDLSSPGSINSKSPEHSVP 568

Query: 209 PIAPRPSNSSPNSPPP-PSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSS 258
            +     +   ++     ST   +      +  +  +P   +  ++P  +S
Sbjct: 569 LVRVFDIHLRASTTKGRHSTPSTNEKKKRLLKRSPLSPPKESVATTPRLNS 619

Length = 619

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 53.5 bits (128), Expect = 6e-08
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 8/90 (8%)

Query: 375 LGEGGFGSVY----KGYLPDGRE--VAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSL 428
           LGEG FG V+       LP+  +  VA+K LK       ++F+ E E+++ + H+H+V  
Sbjct: 13  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRF 72

Query: 429 VGYCISDDRRLLIYDYVPNNTL--YFHLHG 456
            G C      L++++Y+ +  L  +   HG
Sbjct: 73  YGVCTEGRPLLMVFEYMRHGDLNRFLRSHG 102

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 54.9 bits (133), Expect = 7e-08
 Identities = 13/82 (15%), Positives = 26/82 (31%)

Query: 18  PPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSS 77
           P  +  PT +     +     +  P   +       PP+  A   P   +  A++    +
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 78  PPPASNPPTSSPPPSPPASSPP 99
            PPA+    +    +      P
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.6 bits (132), Expect = 7e-08
 Identities = 20/81 (24%), Positives = 30/81 (37%)

Query: 85  PTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNP 144
            ++S     P     +  PP P    P  +   P  TPPP  P +  +   A +  P++ 
Sbjct: 515 GSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADS 574

Query: 145 PSNLPPPPPSSVEPPKRSPPS 165
               P P   +  P K S P 
Sbjct: 575 SPPPPIPEEPTPSPTKDSSPE 595

Length = 620

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 54.8 bits (131), Expect = 7e-08
 Identities = 59/248 (23%), Positives = 87/248 (35%), Gaps = 6/248 (2%)

Query: 18  PPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSS 77
           P  +     +P  P ++   +     P S  PT +   + P    PTS +  A+   TS 
Sbjct: 443 PHKTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTSSTLPEDTSPTSRTTSATPNATSP 502

Query: 78  PPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPAN 137
            P  + P  +SP     + +P   SP P V    T +  PP+ T    +  SP       
Sbjct: 503 TPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVPNATSP--QVTEE 560

Query: 138 SPPPSNPPSNLPPPPP---SSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSN 194
           SP  +     +   P    S+V   +    S P    P  PSSS       +    P   
Sbjct: 561 SPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHSTPRSNSTSTTPLLT 620

Query: 195 VPPPPTQTPPTPASPIAPRPSNSSPNSP-PPPSTKRLSPPPGIPVPSTENTPGNGTNPSS 253
              P      T  +P  P  ++ S  SP P P T      PG    S      + T    
Sbjct: 621 SAHPTGGENITEETPSVPSTTHVSTLSPGPGPGTTSQVSGPGNSSTSRYPGEVHVTEGMP 680

Query: 254 PESSSSPS 261
             +++SPS
Sbjct: 681 NPNATSPS 688

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 54.7 bits (131), Expect = 8e-08
 Identities = 46/183 (25%), Positives = 62/183 (33%)

Query: 42  PPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTI 101
           PP +  PP  +  PS P   P   + PP  SP  + P P    P+     S P+  P  +
Sbjct: 178 PPSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRL 237

Query: 102 SPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKR 161
             P P   P T S   P    P +  P      P    P +     +    PSS  P   
Sbjct: 238 PSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPF 297

Query: 162 SPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNS 221
                     P P  + P  ++PP+  A+ P   P      P      I P P+   P  
Sbjct: 298 GLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPIPQL 357

Query: 222 PPP 224
           P  
Sbjct: 358 PNQ 360

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 53.2 bits (128), Expect = 8e-08
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 4/78 (5%)

Query: 374 LLGEGGFGSVYKG-YLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYC 432
            +G+G FG V  G Y   G++VA+K LK      +  F AE  +++ + H +LV L+G  
Sbjct: 13  TIGKGEFGDVMLGDYR--GQKVAVKCLKDDSTAAQ-AFLAEASVMTTLRHPNLVQLLGVV 69

Query: 433 ISDDRRLLIYDYVPNNTL 450
           +  +   ++ +Y+   +L
Sbjct: 70  LQGNPLYIVTEYMAKGSL 87

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.2 bits (131), Expect = 9e-08
 Identities = 20/85 (23%), Positives = 31/85 (36%)

Query: 46  SKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPP 105
           S+  + S     P     +   P  + P       A  P    PPP+   +S    +  P
Sbjct: 512 SQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIP 571

Query: 106 PVSNPPTRSPPPPSSTPPPNSPPSP 130
             S+PP   P  P+ +P  +S P  
Sbjct: 572 ADSSPPPPIPEEPTPSPTKDSSPEE 596

Length = 620

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 54.4 bits (131), Expect = 1e-07
 Identities = 39/187 (20%), Positives = 52/187 (27%), Gaps = 7/187 (3%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
           +           SS P P S+  +     P  +P      P P S   ++S   S  +S+
Sbjct: 267 TRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSS 326

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
             TSSS  +S     SP P+     S  P       P    P  P   P     P   + 
Sbjct: 327 SSTSSSSESSRGAAVSPGPSP----SRSPSPSRPPPPAD--PSSPRKRPRPSRAPSSPAA 380

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPP-PPSSSPP 180
                         A      +     P   P        +         P   PS  P 
Sbjct: 381 SAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYPLLTPSGEPW 440

Query: 181 KNSPPAP 187
             SPP P
Sbjct: 441 PGSPPPP 447

Length = 1352

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 39/178 (21%), Positives = 56/178 (31%), Gaps = 4/178 (2%)

Query: 29  PPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSS 88
           P P      +          P++ P P+  +S+P   S  P+ S P S P P+S   +SS
Sbjct: 258 PRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSS 317

Query: 89  PPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNL 148
              S  +SS  T S             P PS +P   SP  PP  P   S P   P  + 
Sbjct: 318 SSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSP---SPSRPP-PPADPSSPRKRPRPSR 373

Query: 149 PPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTP 206
            P  P++         +            +  +     P   P              P
Sbjct: 374 APSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYP 431

Length = 1352

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 26/77 (33%), Positives = 35/77 (45%)

Query: 111 PTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQN 170
            + S    +  PP  SPP P   PP   P  + PP   PPPPP++ +    +P  +P  +
Sbjct: 515 GSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADS 574

Query: 171 PPPPPSSSPPKNSPPAP 187
            PPPP    P  SP   
Sbjct: 575 SPPPPIPEEPTPSPTKD 591

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 21/81 (25%), Positives = 32/81 (39%)

Query: 64  TSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPP 123
           + S+   +  P         P  + P P P A++PP   PPPP +     S  P      
Sbjct: 514 SGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPAD 573

Query: 124 PNSPPSPPSDPPANSPPPSNP 144
            + PP  P +P  +    S+P
Sbjct: 574 SSPPPPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 29/85 (34%), Positives = 37/85 (43%), Gaps = 4/85 (4%)

Query: 56  SPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSP 115
           S  ASN   +  PP  SPP    PPA  PP   P  + P  +PP   P    ++    + 
Sbjct: 514 SGSASNTAKTPPPPQKSPP----PPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQ 569

Query: 116 PPPSSTPPPNSPPSPPSDPPANSPP 140
            P  S+PPP  P  P   P  +S P
Sbjct: 570 IPADSSPPPPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 21/101 (20%), Positives = 33/101 (32%), Gaps = 2/101 (1%)

Query: 4   PSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPP 63
              GP          P + P   +      +P +SS    P +    T P  +PP  +  
Sbjct: 371 GGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVD 430

Query: 64  TSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPP 104
             ++ P    P S+ P A  P         P S   ++ P 
Sbjct: 431 PPAAVPV--NPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPS 469

Length = 614

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 5/112 (4%)

Query: 121 TPPPNSPPSPPSDPPANSPPPSNPPS-NLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSP 179
            PP  + P+    PPA +P   + P+     P P  VE  KR       +      +++P
Sbjct: 52  APPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLT---AQREQLVARAAAP 108

Query: 180 PKNSPPAPIAVP-PSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRL 230
                 AP A    +       +     A+   PR    +  +       R+
Sbjct: 109 AAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKARI 160

Length = 484

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 33/218 (15%), Positives = 45/218 (20%), Gaps = 7/218 (3%)

Query: 5   SPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPT 64
           S GP A    +  P   +              K      P  +P    P        PP 
Sbjct: 85  SKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPK 144

Query: 65  SSSPPASSPPTSSPPPASNPPTS-SPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPP 123
                        P                    PP   PP     PP       ++   
Sbjct: 145 EK-EKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREA 203

Query: 124 PNSPPSPPSDPP-----ANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSS 178
               P  P          +        ++      S          S   + P P PS +
Sbjct: 204 VKGKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSSEISRRSSSSLKKPDPSPSMA 263

Query: 179 PPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSN 216
            P+    +            P    P  A P  PR   
Sbjct: 264 SPETRESSKRTETRPRTSLRPPSARPASARPAPPRVKR 301

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 31/139 (22%), Positives = 44/139 (31%), Gaps = 9/139 (6%)

Query: 2   SAPSPGP-PAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS 60
            AP+  P  AA  ++  P        +   P    P ++P P     PP    PP   + 
Sbjct: 452 PAPAAAPAAAARPAAAGPR--PVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASP 509

Query: 61  NPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSS 120
            P    + PA     S P PA+  P          +  P  +P P  +        P   
Sbjct: 510 APAQPDAAPAGWVAESIPDPATADP---DDAFETLAPAPAAAPAPRAAAATEPVVAP--- 563

Query: 121 TPPPNSPPSPPSDPPANSP 139
            PP  S    P     + P
Sbjct: 564 RPPRASASGLPDMFDGDWP 582

Length = 700

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 53.4 bits (129), Expect = 2e-07
 Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 3/82 (3%)

Query: 77  SPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPA 136
            P   + P  ++   +  AS+P         + P    P   +   PP    +  +    
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Query: 137 NSPPPSNPPSNLPPPPPSSVEP 158
            +PP +        P  ++VE 
Sbjct: 97  AAPPAAAAA---AAPAAAAVED 115

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 53.4 bits (129), Expect = 2e-07
 Identities = 14/82 (17%), Positives = 29/82 (35%)

Query: 111 PTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQN 170
           P  +  P ++     +  S P+  PA   P +  P+      P++   P  +  +     
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 171 PPPPPSSSPPKNSPPAPIAVPP 192
            PP  +++    +      V P
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.0 bits (128), Expect = 2e-07
 Identities = 26/81 (32%), Positives = 31/81 (38%)

Query: 13  SSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASS 72
           S+S       PP  SPPPP   PP   P        P   PP +  AS+   +  P  SS
Sbjct: 516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSS 575

Query: 73  PPTSSPPPASNPPTSSPPPSP 93
           PP   P   +  PT    P  
Sbjct: 576 PPPPIPEEPTPSPTKDSSPEE 596

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.0 bits (128), Expect = 2e-07
 Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 71  SSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSP 130
           S+  T+  PP        P P+PP   P   +PPP    PP       +S+  P   P+ 
Sbjct: 516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPP--TATQASSNAPAQIPAD 573

Query: 131 PSDPPANSPPPSNPPSNLPPP 151
            S PP     P+  P+    P
Sbjct: 574 SSPPPPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 53.2 bits (127), Expect = 2e-07
 Identities = 73/285 (25%), Positives = 95/285 (33%), Gaps = 10/285 (3%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
           SAPS  P    S  PP         SP PP  +             P   +    P    
Sbjct: 228 SAPSLHPQRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQ 287

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
            P+S+ P       S  PP   P  + P    P S        PP   P   +P  P   
Sbjct: 288 HPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIK 347

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPP-----PPPSSVEPPKRSPPSVPPQNPPPP-- 174
           PPP +P     +     PP    PS  P      PPP +++P    P   PP   PPP  
Sbjct: 348 PPPTTPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQ 407

Query: 175 --PSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSP 232
             P S P ++ P  P  +  S   PP   T P       P P +     P          
Sbjct: 408 LMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGP-PQSPFAQHPFTSGGLPAIG 466

Query: 233 PPGIPVPSTENTPGNGTNPSSPESSSSPSNNGIGTAGTVVIAVAV 277
           PP     ST   P   ++ S P  S+ PS+ G    G  +  + +
Sbjct: 467 PPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCAGPGPPLPPIQI 511

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 53.2 bits (127), Expect = 2e-07
 Identities = 64/250 (25%), Positives = 85/250 (34%), Gaps = 25/250 (10%)

Query: 14  SSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSP 73
              PP +  PP  +  P    P  S+   PP   P    P P P   +P +  S P+  P
Sbjct: 175 PQGPPSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHP 234

Query: 74  PTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSP----------PPPSSTPP 123
                P     P ++   SP   +P +  P      P    P            PSS PP
Sbjct: 235 QRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPP 294

Query: 124 PNSPPSPPSDPPANSPPPSNPPSNLP---------------PPPPSSVEPPKRSPPSVPP 168
                +    PP   P  + P S+ P               P PP+   P  + PP+ P 
Sbjct: 295 QPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPI 354

Query: 169 QNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTK 228
              P      PP    P+P    PSN+PPPP   P +      P  ++  P    P S  
Sbjct: 355 PQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQP 414

Query: 229 RLSPPPGIPV 238
             S P   PV
Sbjct: 415 LQSVPAQPPV 424

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 53.0 bits (128), Expect = 2e-07
 Identities = 13/96 (13%), Positives = 22/96 (22%)

Query: 41  PPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPT 100
           PP   +      PP + PA+    ++     +P                     A + P 
Sbjct: 53  PPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPE 112

Query: 101 ISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPA 136
              P   +                 + P P     A
Sbjct: 113 AQAPAAPAERAAAENAARRLARAAAAAPRPRVPADA 148

Length = 484

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 53.6 bits (128), Expect = 2e-07
 Identities = 43/257 (16%), Positives = 61/257 (23%), Gaps = 30/257 (11%)

Query: 4   PSPGPPAANSSSPPPPVSNPPT---ISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS 60
           P PGP        P P   P       P    + P +    P      P    P   P  
Sbjct: 362 PVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYY 421

Query: 61  NPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSS 120
            P             +   P +     +       +   T         P   +   P  
Sbjct: 422 APAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQP---AAQEPLY 478

Query: 121 TPPPNSPPSPPSDPP--ANSPPPSNPP------------------SNLPPPPPSSVEPPK 160
             P      P  +P        P+ PP                  +    P P  V+ P+
Sbjct: 479 QQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPE 538

Query: 161 RSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTP----ASPIAPRPSN 216
               S+   +    P         P    V  + +      T   P    A+   PRP  
Sbjct: 539 PIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQV 598

Query: 217 SSPNSPPPPSTKRLSPP 233
                P  P  KR+  P
Sbjct: 599 KEGIGPQLPRPKRIRVP 615

Length = 1355

>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 37/169 (21%), Positives = 57/169 (33%), Gaps = 18/169 (10%)

Query: 47  KPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPP---PSPPASSPPTISP 103
           K      P +PP+  PP S S PASSP  S    + +           S P ++  + S 
Sbjct: 638 KSSADRKPKTPPSRAPPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGSA 697

Query: 104 P--PPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKR 161
           P  PPV +P  R  PP    P   S    P++    +   S   ++       +VE    
Sbjct: 698 PAPPPVPDPYDR--PPWEEAPEVASANDGPNNAAEGNLSESVEDASNSELQ--AVEQQAT 753

Query: 162 SPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPI 210
             P V  +   P  +++  + S           V           +  I
Sbjct: 754 HQPQVQAEAQSPASTTALTQTSSE---------VQDTELNLVLLSSGSI 793

Length = 944

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 53.4 bits (128), Expect = 3e-07
 Identities = 48/174 (27%), Positives = 62/174 (35%), Gaps = 22/174 (12%)

Query: 103  PPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPK-- 160
            P  PV   P  +  P ++   P+     P DP A   P    P+ LP  P      P+  
Sbjct: 2475 PGAPVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRML 2534

Query: 161  ---RSPPSVPPQNPPPPPSSSPPKNSPPAP-IAVPPSNVPPPPTQ-----------TPPT 205
               R    +   +   PP   PP   P AP  +VPP    P P++            PP 
Sbjct: 2535 TWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQ 2594

Query: 206  PASPIAPR-----PSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSP 254
             A P AP      P   +P SP PP T    PPP  P P+      +      P
Sbjct: 2595 SARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPP 2648

Length = 3151

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 53.0 bits (128), Expect = 3e-07
 Identities = 16/82 (19%), Positives = 28/82 (34%)

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPK 181
           P   + P+  +   A +            P   +  PP  + P+ PP+      +++ P 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 182 NSPPAPIAVPPSNVPPPPTQTP 203
             P A  A  P+        TP
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 53.0 bits (128), Expect = 3e-07
 Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 7/99 (7%)

Query: 153 PSSVEPPKR------SPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTP 206
           P+SV+P  R       P S          +++       AP A  P+  P P       P
Sbjct: 22  PNSVDPSWREFFADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPA-APAPAPPAAAAP 80

Query: 207 ASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTP 245
           A+P  P  + ++  +P  P     +  P       E TP
Sbjct: 81  AAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 53.0 bits (128), Expect = 3e-07
 Identities = 13/80 (16%), Positives = 25/80 (31%)

Query: 126 SPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPP 185
            P S  +   A +   +   +    P   +   P  +PP+      PP P+++    + P
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Query: 186 APIAVPPSNVPPPPTQTPPT 205
           A      +   P        
Sbjct: 97  AAPPAAAAAAAPAAAAVEDE 116

Length = 1228

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 23/80 (28%), Positives = 29/80 (36%)

Query: 148 LPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPA 207
           LP    S +          P  NP PPP+   P        A  PS  P   +   P PA
Sbjct: 360 LPSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPA 419

Query: 208 SPIAPRPSNSSPNSPPPPST 227
            P  P P+  +  +  PPS 
Sbjct: 420 EPTEPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 2/83 (2%)

Query: 76  SSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPP 135
           S+   A  PP     P PPA +PP   P      P    PPP ++    N+P   P+D  
Sbjct: 516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSS 575

Query: 136 ANSPPPSNPPSNLPPPPPSSVEP 158
              PPP        P   SS E 
Sbjct: 576 --PPPPIPEEPTPSPTKDSSPEE 596

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 2/81 (2%)

Query: 75  TSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDP 134
           + S    +  P       PP +  P +  P   + PPT  PPPP++T    S  +P   P
Sbjct: 514 SGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQA--SSNAPAQIP 571

Query: 135 PANSPPPSNPPSNLPPPPPSS 155
             +SPPP  P    P P   S
Sbjct: 572 ADSSPPPPIPEEPTPSPTKDS 592

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 26/81 (32%), Positives = 34/81 (41%)

Query: 135 PANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSN 194
            + S     PP     PPP +  PP   P +  P   PPPP  +  + S  AP  +P  +
Sbjct: 515 GSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADS 574

Query: 195 VPPPPTQTPPTPASPIAPRPS 215
            PPPP    PTP+      P 
Sbjct: 575 SPPPPIPEEPTPSPTKDSSPE 595

Length = 620

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 52.8 bits (126), Expect = 3e-07
 Identities = 51/215 (23%), Positives = 73/215 (33%), Gaps = 6/215 (2%)

Query: 29  PPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSS 88
           P P   P +  P   P +    +S P       P    S     P T S  P ++ P   
Sbjct: 565 PAPGLGPLQIQPLTSPTTSQLASSAPSYAQTPWPVPHPSQTPEPPTTQSHIPETSAPRQW 624

Query: 89  PPPSPPASSPPTISPPPPVSNPPTRSP--PPPSSTPPPNSPPSPPSDPPANSPPPSNPPS 146
           P P  P    P    P   +     +P  PP     P     +     P    P      
Sbjct: 625 PMPLRPIPMRPLRMQPITFNVLVFPTPHQPPQVEITPYKPTWTQIGHIPYQPSPTGANTM 684

Query: 147 NLPPPPPSSVEPPKRSP-PSVPPQNPP---PPPSSSPPKNSPPAPIAVPPSNVPPPPTQT 202
                 P +++PP R+P P  PP  PP     P+++  +  PPA            P + 
Sbjct: 685 LPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRA 744

Query: 203 PPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIP 237
            P  A+P   RP  ++P    PP+    +P P  P
Sbjct: 745 RPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPP 779

Length = 991

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 52.8 bits (126), Expect = 3e-07
 Identities = 63/238 (26%), Positives = 79/238 (33%), Gaps = 7/238 (2%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPP----VSKPPTTSPPPSP 57
            A S  PP    S   P    PP+ S   P   P +   PP P    +  PPTT  P  P
Sbjct: 299 LAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPIPQLP 358

Query: 58  PASN---PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRS 114
             S+   P      P    P++ PPP +  P SS P   P S+ P      P S P    
Sbjct: 359 NQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSV 418

Query: 115 PPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPP 174
           P  P       S P   S  P +      P S     P +S   P   PP   P + P  
Sbjct: 419 PAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAIGPPPSLPTSTPAA 478

Query: 175 PSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSP 232
           P  +   + PP            P    PP          +    + PPPP +    P
Sbjct: 479 PPRASSGSQPPGSALPSSGGCAGPGPPLPPIQIKEEPLDEAEEPESPPPPPRSPSPEP 536

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 26/129 (20%), Positives = 35/129 (27%), Gaps = 8/129 (6%)

Query: 66  SSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPP--PVSNPPTRSPPPPSSTPP 123
               A +          +P     PP   A     +  PP   V       P  P+  P 
Sbjct: 70  RVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPV 129

Query: 124 PNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNS 183
                 P  + P         P   P P P    P   +  +  P  P   P   P   +
Sbjct: 130 QQPAYQPQPEQP---LQQPVSPQVAPAPQPVHSAPQP-AQQAFQPAEPVAAPQPEPV--A 183

Query: 184 PPAPIAVPP 192
            PAP+   P
Sbjct: 184 EPAPVMDKP 192

Length = 333

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 16/108 (14%), Positives = 35/108 (32%)

Query: 56  SPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSP 115
           +PPA+  P ++ PP ++ P +   PA+     +P     A                  +P
Sbjct: 52  APPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAP 111

Query: 116 PPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSP 163
              +   P     +  +         + P   +P    ++V    ++ 
Sbjct: 112 EAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKAR 159

Length = 484

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 51.4 bits (124), Expect = 3e-07
 Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 12/88 (13%)

Query: 375 LGEGGFGSVY----KGYLPDGREVAIKQLK---IGGGQGEREFKAEVEIISRIHHRHLVS 427
           LG+G FG V     K     G+  A+K LK   I   +       E  I+SRI+H  +V 
Sbjct: 1   LGKGSFGKVLLVRKKD---TGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVK 57

Query: 428 LVGYCISDDRRL-LIYDYVPNNTLYFHL 454
           L  Y    + +L L+ +Y P   L+ HL
Sbjct: 58  LH-YAFQTEEKLYLVLEYAPGGELFSHL 84

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 51.6 bits (123), Expect = 3e-07
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 8/90 (8%)

Query: 375 LGEGGFGSVY----KGYLPDGRE--VAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSL 428
           LGEG FG V+        P+  +  VA+K LK       ++F  E E+++ + H H+V  
Sbjct: 13  LGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKF 72

Query: 429 VGYCISDDRRLLIYDYVPNNTL--YFHLHG 456
            G C+  D  +++++Y+ +  L  +   HG
Sbjct: 73  YGVCVEGDPLIMVFEYMKHGDLNKFLRAHG 102

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 29/101 (28%), Positives = 39/101 (38%), Gaps = 5/101 (4%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNP--PKSSPPPPPVSKPPTTSPPPSPPA 59
           ++ SP  P ++S   P   S P   S P   S P  P S     P   P + + P  PP 
Sbjct: 180 ASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPG 239

Query: 60  SNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPT 100
              P    P    PP S+  P   PP++S  P+P       
Sbjct: 240 PAAP-PPPPVQQVPPLSTAKPT--PPSASATPAPIGGITLD 277

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 52.6 bits (127), Expect = 4e-07
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 2/85 (2%)

Query: 83  NPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPS 142
            P +++ P +  A++    S P     P  ++P  P+  PP  + P+ P  P A +   +
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAA--PAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAA 94

Query: 143 NPPSNLPPPPPSSVEPPKRSPPSVP 167
            P +       ++           P
Sbjct: 95  APAAPPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.3 bits (126), Expect = 4e-07
 Identities = 20/78 (25%), Positives = 29/78 (37%)

Query: 52  SPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPP 111
           S   S  A+    ++  PA +P     P   + P +    + P+  P   SPP PV   P
Sbjct: 362 SAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEP 421

Query: 112 TRSPPPPSSTPPPNSPPS 129
           T   P P +      P  
Sbjct: 422 TEPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.9 bits (125), Expect = 4e-07
 Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 1/80 (1%)

Query: 76  SSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPP 135
            S   +     S+P    PA +P     P   S P T      + +PPP     P   P 
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKT-KQAATTPSPPPAKASPPIPVPA 419

Query: 136 ANSPPPSNPPSNLPPPPPSS 155
             + P   PP+N    PPS 
Sbjct: 420 EPTEPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 31/126 (24%), Positives = 41/126 (32%), Gaps = 4/126 (3%)

Query: 39  SPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSP 98
                P +     +  PSP     P  +S      P   PP A  PP  +P P+ PA  P
Sbjct: 70  RVNHAPANAQEHEAARPSPQHQYQPPYASA-QPRQPVQQPPEAQVPPQHAPRPAQPAPQP 128

Query: 99  PTISPPPPVSNPPTRSPPPPSSTPPPN--SPPSPPSDPPANSPPPSNPPSNLPPPPPS-S 155
                  P    P + P  P   P P        P+        P   P   P   P+  
Sbjct: 129 VQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPV 188

Query: 156 VEPPKR 161
           ++ PKR
Sbjct: 189 MDKPKR 194

Length = 333

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 51.9 bits (125), Expect = 4e-07
 Identities = 17/100 (17%), Positives = 29/100 (29%), Gaps = 7/100 (7%)

Query: 111 PTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQN 170
           P  +  P ++ PPP + P+  S P A +  P+           +  E       +     
Sbjct: 53  PPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPE 112

Query: 171 PPPPPSSS-------PPKNSPPAPIAVPPSNVPPPPTQTP 203
              P + +         +    A  A P   VP       
Sbjct: 113 AQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAV 152

Length = 484

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 64  TSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPP 123
             + P A+    +   PA+ PP ++PP  P A + P  + P P    P  +  PP+ +  
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAP-APPAAAAPPARSAD 439

Query: 124 PNSPPSPPS 132
           P +  S   
Sbjct: 440 PAAAASAGD 448

Length = 576

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.9 bits (125), Expect = 5e-07
 Identities = 24/81 (29%), Positives = 29/81 (35%), Gaps = 4/81 (4%)

Query: 114 SPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPP 173
           +     + PPP   P PP+  P    P +  P   PPPPP    P      S  P   P 
Sbjct: 517 ASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPP----PTATQASSNAPAQIPA 572

Query: 174 PPSSSPPKNSPPAPIAVPPSN 194
             S  PP    P P     S+
Sbjct: 573 DSSPPPPIPEEPTPSPTKDSS 593

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.9 bits (125), Expect = 5e-07
 Identities = 17/82 (20%), Positives = 26/82 (31%)

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTP 122
            ++S+   + PP    PP   P    P P+  A  P    PPP  +   + +P    +  
Sbjct: 515 GSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADS 574

Query: 123 PPNSPPSPPSDPPANSPPPSNP 144
            P  P      P          
Sbjct: 575 SPPPPIPEEPTPSPTKDSSPEE 596

Length = 620

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.1 bits (125), Expect = 5e-07
 Identities = 23/91 (25%), Positives = 31/91 (34%), Gaps = 6/91 (6%)

Query: 29  PPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSS 88
           P     P  + P   P    P+ +   SP   +P  SS+    S P S+  PA  PPT S
Sbjct: 375 PKQHIKPVFTQPAAAP---QPSAAAAASP---SPSQSSAAAQPSAPQSATQPAGTPPTVS 428

Query: 89  PPPSPPASSPPTISPPPPVSNPPTRSPPPPS 119
             P       P  + P  V     +      
Sbjct: 429 VDPPAAVPVNPPSTAPQAVRPAQFKEEKKIP 459

Length = 614

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.1 bits (125), Expect = 5e-07
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 11/106 (10%)

Query: 17  PPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTS 76
                    I P    + P  ++ P P  +   + SP     +S     S+P +++ P  
Sbjct: 370 SGGRGPKQHIKPV--FTQP--AAAPQPSAAAAASPSPSQ---SSAAAQPSAPQSATQPAG 422

Query: 77  SPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTP 122
           +PP  S  P ++ P +PP+++P  + P             P S   
Sbjct: 423 TPPTVSVDPPAAVPVNPPSTAPQAVRPAQ----FKEEKKIPVSKVS 464

Length = 614

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 52.4 bits (125), Expect = 5e-07
 Identities = 38/174 (21%), Positives = 53/174 (30%), Gaps = 8/174 (4%)

Query: 54  PPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSP--PPSPPASSP-PTISPPPPVSNP 110
           P  P    PP +S     + PT +  P   P T  P   P+P         + P    N 
Sbjct: 336 PVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNE 395

Query: 111 PTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQN 170
           P + P  P       +   P   P     P    P+  P   P+  +P   +      Q 
Sbjct: 396 PLQQPVQPQQPYYAPAAEQPAQQP--YYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQ 453

Query: 171 PP-PPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPP 223
               P S+   + +   P A  P    P P      P     P    + P  PP
Sbjct: 454 STFAPQSTYQTEQTYQQPAAQEPLYQQPQP--VEQQPVVEPEPVVEETKPARPP 505

Length = 1355

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 50.7 bits (122), Expect = 5e-07
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 372 QNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGE--REFKAEVEIISRIHHRHLVSL 428
            +L+G G FG VYKG  L  G  VAIKQ+ +   + E  +    E++++  + H ++V  
Sbjct: 5   GDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKY 64

Query: 429 VGYCISDDRRLLIYDYVPNNTLY 451
           +G   + D   +I +Y  N +L 
Sbjct: 65  IGSIETSDSLYIILEYAENGSLR 87

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 52.0 bits (124), Expect = 5e-07
 Identities = 47/209 (22%), Positives = 59/209 (28%), Gaps = 8/209 (3%)

Query: 29  PPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPAS-NPPTS 87
           P           P P     P+  P  S     P     P     P     P S   PT 
Sbjct: 549 PGETKEGEVGKKPGPAKEHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTR 608

Query: 88  SPPPSPPASSPPTISPPPPVSNPPTRSPPP---PSSTPPPNSPPSPPSDPPANSPPPSNP 144
              P  P       SP  P S    + PPP   PSS   P  P    S  P  SP P   
Sbjct: 609 PKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPPFD 668

Query: 145 PSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPP 204
           P          ++   +S  +           S   +  P  P     +  P PP   P 
Sbjct: 669 PKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKL-PR 727

Query: 205 TPASPIAPRPSNSSPNSPPPPSTKRLSPP 233
               P  P      P++  P   +  +PP
Sbjct: 728 DEEFPFEPI---GDPDAEQPDDIEFFTPP 753

Length = 943

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 51.8 bits (125), Expect = 6e-07
 Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 1/76 (1%)

Query: 132 SDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVP 191
                 +P  +   +      P++    K      P   P     ++PPK +  A  A  
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAP-PAAAAPAAPPKPAAAAAAAAA 95

Query: 192 PSNVPPPPTQTPPTPA 207
           P+  P       P  A
Sbjct: 96  PAAPPAAAAAAAPAAA 111

Length = 1228

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.5 bits (124), Expect = 6e-07
 Identities = 27/82 (32%), Positives = 39/82 (47%)

Query: 7   GPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSS 66
           G  +  + +PPPP  +PP  +P PP+  P  ++PPP P   PPT +   S   +  P  S
Sbjct: 515 GSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADS 574

Query: 67  SPPASSPPTSSPPPASNPPTSS 88
           SPP   P   +P P  +     
Sbjct: 575 SPPPPIPEEPTPSPTKDSSPEE 596

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.5 bits (124), Expect = 6e-07
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 1/80 (1%)

Query: 9   PAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSP 68
           P+A  S      +     +P P  S PP    P  P +K   T+P P P  ++PP     
Sbjct: 361 PSAFISEIANASAPANP-TPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPA 419

Query: 69  PASSPPTSSPPPASNPPTSS 88
             + P  + P  A+N P S 
Sbjct: 420 EPTEPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 50.9 bits (122), Expect = 6e-07
 Identities = 32/148 (21%), Positives = 44/148 (29%), Gaps = 11/148 (7%)

Query: 12  NSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPAS 71
            S   PPPV+  P    P P   P ++    P   +    +P  SP A+ P T + P   
Sbjct: 51  PSPQAPPPVAQLPQ---PLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGP 107

Query: 72  SPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPP 131
           + PT    P    P   P          T +P     + P +              P+  
Sbjct: 108 AGPTIQTEPGQLYPVQVPVMV-------TQNPANSPLDQPAQQRALQQLQQRYG-APASG 159

Query: 132 SDPPANSPPPSNPPSNLPPPPPSSVEPP 159
             P        N  S L   P     P 
Sbjct: 160 QLPSQQQSAQKNDESQLQQQPNGETPPQ 187

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.5 bits (124), Expect = 7e-07
 Identities = 24/77 (31%), Positives = 30/77 (38%)

Query: 33  SNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPS 92
           SN  K+ PPP     PP  +PP   P +  P  + PP     T +   A     +   P 
Sbjct: 518 SNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPP 577

Query: 93  PPASSPPTISPPPPVSN 109
           PP    PT SP    S 
Sbjct: 578 PPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 50.7 bits (121), Expect = 7e-07
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 7/83 (8%)

Query: 375 LGEGGFGSVYKGY------LPDGREVAIKQLKIGGGQGE-REFKAEVEIISRIHHRHLVS 427
           LGEG FG V K              VA+K LK      E R+  +E  ++ +++H H++ 
Sbjct: 8   LGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIK 67

Query: 428 LVGYCISDDRRLLIYDYVPNNTL 450
           L G C  D   LLI +Y    +L
Sbjct: 68  LYGACSQDGPLLLIVEYAKYGSL 90

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 50.4 bits (121), Expect = 7e-07
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 5/88 (5%)

Query: 372 QNLLGEGGFGSVYKGYL--PDGRE--VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLV 426
           + ++G G FG V +G L  P  +E  VAIK LK G    +R +F  E  I+ +  H +++
Sbjct: 9   EKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNII 68

Query: 427 SLVGYCISDDRRLLIYDYVPNNTLYFHL 454
            L G        ++I +Y+ N +L   L
Sbjct: 69  RLEGVVTKSRPVMIITEYMENGSLDKFL 96

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 50.8 bits (122), Expect = 7e-07
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 6/93 (6%)

Query: 8   PPAANSSSPPPPVSNPPTISPPPPVSN--PPKSSPPPPPVSKPPTTSPPPSPPASNPPTS 65
           P   ++++ P     P       P ++  P  ++ P P V         PS    +   +
Sbjct: 163 PLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAAT 222

Query: 66  SSPPASSPPTSSPPPASNPPTSSPPPSPPASSP 98
            +P A + P  + P     PT     S PA+ P
Sbjct: 223 PAPAAPATPDGAAP----LPTDQAGVSTPAADP 251

Length = 331

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.1 bits (123), Expect = 8e-07
 Identities = 16/77 (20%), Positives = 22/77 (28%)

Query: 36  PKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPA 95
              S      +    T  P   P   P   S+P      T+  PP +      P P+ P 
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPT 422

Query: 96  SSPPTISPPPPVSNPPT 112
              PT       + P  
Sbjct: 423 EPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 50.5 bits (121), Expect = 8e-07
 Identities = 30/158 (18%), Positives = 41/158 (25%), Gaps = 9/158 (5%)

Query: 23  PPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPAS 82
           P   SP  P        P P P       + P      +   + SP A+ P T + P   
Sbjct: 48  PWDPSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGP 107

Query: 83  NPPTSSPPPSP--PASSPP--TISPPPPVSNPPTRSPPPPSSTPP---PNSPPSPPSDPP 135
             PT    P    P   P   T +P     + P +             P S   P     
Sbjct: 108 AGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQQS 167

Query: 136 ANSPPPSNPPS--NLPPPPPSSVEPPKRSPPSVPPQNP 171
           A     S      N   PP  +         ++     
Sbjct: 168 AQKNDESQLQQQPNGETPPQQTDGAGDDESEALVRLRE 205

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 50.1 bits (120), Expect = 9e-07
 Identities = 34/130 (26%), Positives = 43/130 (33%), Gaps = 19/130 (14%)

Query: 149 PPPPPSSVEPPKR--------------SPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSN 194
           P P P   E  +                       +P  PPSSSP   S P+P   P S 
Sbjct: 148 PNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSP 207

Query: 195 VPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSP 254
                   P +  S   P    S  N  PPP      PPP   VP           P+ P
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAK-----PTPP 262

Query: 255 ESSSSPSNNG 264
            +S++P+  G
Sbjct: 263 SASATPAPIG 272

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 50.4 bits (121), Expect = 9e-07
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 2/95 (2%)

Query: 50  TTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSN 109
             S P     +  P ++  PA+   T+     +    ++P P+            P  +N
Sbjct: 159 GQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNA--VVAPSQAN 216

Query: 110 PPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNP 144
             T + P P++   P+     P+D    S P ++P
Sbjct: 217 VDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADP 251

Length = 331

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 50.4 bits (120), Expect = 9e-07
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 5/84 (5%)

Query: 372 QNLLGEGGFGSVYKGYL-PDG--REVAIKQLKIGGGQGE-REFKAEVEIISRI-HHRHLV 426
           Q+++GEG FG V K  +  DG   + AIK++K    + + R+F  E+E++ ++ HH +++
Sbjct: 12  QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNII 71

Query: 427 SLVGYCISDDRRLLIYDYVPNNTL 450
           +L+G C       L  +Y P+  L
Sbjct: 72  NLLGACEHRGYLYLAIEYAPHGNL 95

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 50.7 bits (121), Expect = 1e-06
 Identities = 45/212 (21%), Positives = 66/212 (31%), Gaps = 19/212 (8%)

Query: 67  SPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNS 126
           +PP      +   P +    + PPP P A++P   + PP        +  P +   PP+ 
Sbjct: 256 APPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAPPDP 315

Query: 127 PPSPPSDPPANSP----------PPSNPPSNLPPPPPSSVEPPKRSPPSV--------PP 168
           PP  P+                 P   P  + P   P    P    P S+         P
Sbjct: 316 PPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHP 375

Query: 169 QNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTK 228
           +    P            P A  P           P PAS   P P+    ++PPPP+T 
Sbjct: 376 KRASLPTRKRRSARHAATPFARGPGG-DDQTRPAAPVPASVPTPAPTPVPASAPPPPATP 434

Query: 229 RLSPPPGIPVPSTENTPGNGTNPSSPESSSSP 260
             S  PG               P++  +   P
Sbjct: 435 LPSAEPGSDDGPAPPPERQPPAPATEPAPDDP 466

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 4/104 (3%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISP----PPPVSNPPKSSPPPPPVSKPPTTSPPPSP 57
           +        A +++P P  +  P  +P     PP       +   P        S  P+P
Sbjct: 409 APAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAP 468

Query: 58  PASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTI 101
             +  P  ++ PA +PP +  P A+    ++P     A    T+
Sbjct: 469 APAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATL 512

Length = 824

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.1 bits (123), Expect = 1e-06
 Identities = 26/80 (32%), Positives = 31/80 (38%), Gaps = 2/80 (2%)

Query: 66  SSPPASSPPTSSPPPASNPP-TSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPP 124
            S   S    +S P    P    SPPP+P   S P         +PP     PP   P  
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 125 NSPPSP-PSDPPANSPPPSN 143
            + PSP P    AN+PP  N
Sbjct: 421 PTEPSPTPPANAANAPPSLN 440

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.7 bits (122), Expect = 1e-06
 Identities = 19/76 (25%), Positives = 30/76 (39%)

Query: 1   MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS 60
             +      A  + +P P  S PP    P        ++ P PP +K     P P+ P  
Sbjct: 364 FISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTE 423

Query: 61  NPPTSSSPPASSPPTS 76
             PT  +  A++PP+ 
Sbjct: 424 PSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.7 bits (122), Expect = 1e-06
 Identities = 21/79 (26%), Positives = 31/79 (39%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
           SA +           PPP +  P +  P   + PP   PPPP  ++  + +P   P  S+
Sbjct: 516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSS 575

Query: 62  PPTSSSPPASSPPTSSPPP 80
           PP       +  PT    P
Sbjct: 576 PPPPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 20/85 (23%), Positives = 27/85 (31%)

Query: 50  TTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSN 109
           + S   S  A  PP     P    PT   P  +       PP PP ++    S  P    
Sbjct: 512 SQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIP 571

Query: 110 PPTRSPPPPSSTPPPNSPPSPPSDP 134
             +  PPP    P P+       + 
Sbjct: 572 ADSSPPPPIPEEPTPSPTKDSSPEE 596

Length = 620

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 50.7 bits (122), Expect = 1e-06
 Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 2/100 (2%)

Query: 66  SSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPN 125
           + P A++P  + PPPA+ P   S P +P A   P +                 ++ P   
Sbjct: 52  APPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAP 111

Query: 126 SPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPS 165
              +P +     +         L     ++  P   +  +
Sbjct: 112 EAQAPAAPAERAAAEN--AARRLARAAAAAPRPRVPADAA 149

Length = 484

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 2/103 (1%)

Query: 18  PPVSNPPTISPPPPVSNPPKSSPP--PPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPT 75
           PP +  P  + PPP + P   S P  P     P          A      +   A + P 
Sbjct: 53  PPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPE 112

Query: 76  SSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPP 118
           +  P A     ++   +   +     +P P V      +    
Sbjct: 113 AQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADA 155

Length = 484

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 15/103 (14%), Positives = 33/103 (32%)

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
           PP +++P A+ PP ++ P A + P +      P                  R+  P +  
Sbjct: 53  PPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPE 112

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPP 164
               + P+  +     +   +   +  P P   +      +  
Sbjct: 113 AQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADA 155

Length = 484

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 29/164 (17%), Positives = 38/164 (23%), Gaps = 22/164 (13%)

Query: 41  PPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPP----TSSPPPASNPPTSSPPPSPPAS 96
           P P    P    P P P         + PA         +  P A+ P T + P  P   
Sbjct: 51  PSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPA-- 108

Query: 97  SPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPP--SDPPANSPPPSNPPSNLPPPPPS 154
             PTI   P    P     P   +  P NSP   P               P++       
Sbjct: 109 -GPTIQTEPGQLYPVQV--PVMVTQNPANSPLDQPAQQRALQQLQQRYGAPAS------- 158

Query: 155 SVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPP 198
                +        Q          P    P        +    
Sbjct: 159 ----GQLPSQQQSAQKNDESQLQQQPNGETPPQQTDGAGDDESE 198

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|221188 pfam11725, AvrE, Pathogenicity factor

 Score = 51.3 bits (123), Expect = 1e-06
 Identities = 43/265 (16%), Positives = 67/265 (25%), Gaps = 28/265 (10%)

Query: 8   PPAANSSSPPPPVSNPPTI----SPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPP 63
              A      P    P  +      P   ++   +S       K P      S P     
Sbjct: 10  TKTAVQPEATPSAGAPTGLQQSSESPTQRASHSLASEGKKNRKKMPKVFQKSSAP---RQ 66

Query: 64  TSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPP 123
             ++PP +  PT++ P +S  PT     + P     T +P          SP     T  
Sbjct: 67  IQAAPPQALNPTAAAPQSSRGPTLRELLALPEDDGETQAPES--------SPSARRLTRS 118

Query: 124 PNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNS 183
                    D         +    L     +     +R P S         P+++    +
Sbjct: 119 EGVARHEMEDLAGRPVVKPDADRQLRQDILNKSSSSRRPPVSKEEGTSSKMPATALASAA 178

Query: 184 PPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTEN 243
                      +           AS    R S S  N P  P     +P   +   S   
Sbjct: 179 L-----FKDDEIRQEVDAARSDQASQ--SRLSRSRGNPPAIP--PDAAPRQPMLTRSAGG 229

Query: 244 TP----GNGTNPSSPESSSSPSNNG 264
                  N      P+S  +    G
Sbjct: 230 RFEGEDENLERNLQPQSPITLDKKG 254

This family is secreted by gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and the fire blight plant pathogen Erwinia amylovora, amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. this conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas. Length = 1771

>gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 45/242 (18%), Positives = 73/242 (30%), Gaps = 21/242 (8%)

Query: 10  AANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPP----ASNPPTS 65
           +   SS   P S+P +     P  + P S+     V  P + S           +  PT 
Sbjct: 388 SNPGSSIDTPSSSPSSSVIMTPPDSGPGSNVSSRRVGTPGSKSDRVGAVLLRRMNIKPTL 447

Query: 66  SSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTIS---PPPPVSNPPTRSPPPPSSTP 122
           +S P   P   S         +SP  S     PP          + N P  +    + + 
Sbjct: 448 ASIPDEKPSNISVF---EDSETSPNSSTLLRDPPPKKCGEESGHLPNNPFFNKLKLTLSS 504

Query: 123 -PPNSPPSPP-SDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPP 180
            PP SP     + P  + P       +L     S         P++  +      S +  
Sbjct: 505 IPPLSPRQSIITLPTPSRPASRISSLSLRLGSYSGSIVSPPPYPTLVSRKGAAGLSFNRS 564

Query: 181 KNSPPAP----IAVPPSNVPPPPTQTPPTPASPIA---PRPSNSSPNSPPPPSTKR--LS 231
            +           + P+ +P  P +   T +S  +   P P+         P      L 
Sbjct: 565 VSDIEGERIGRYNLLPTRIPALPFKAESTTSSRRSSSLPSPTGVIGFPGSVPRFDHENLL 624

Query: 232 PP 233
           PP
Sbjct: 625 PP 626

The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase. Length = 626

>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional

 Score = 50.8 bits (121), Expect = 1e-06
 Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 28/139 (20%)

Query: 33  SNPPKSSPPPPPVSKPPTTSPPPS-PPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPP 91
           SN   S+P     S P   + P S  P +NPP S++P  S+PP S+PP ++ P +++   
Sbjct: 410 SNAGYSNPG---NSNPGYNNAPNSNTPYNNPPNSNTP-YSNPPNSNPPYSNLPYSNT--- 462

Query: 92  SPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPP 151
                         P SN P  + PP S+    ++  +      AN P  + P +N P  
Sbjct: 463 --------------PYSNAPLSNAPPSSAKDHHSAYHAAYQHRAANQPAANLPTANQPAA 508

Query: 152 PP------SSVEPPKRSPP 164
                   +SV  P  S P
Sbjct: 509 NNFHGAAGNSVGNPFASRP 527

Length = 1560

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 50.2 bits (121), Expect = 2e-06
 Identities = 23/122 (18%), Positives = 37/122 (30%), Gaps = 6/122 (4%)

Query: 134 PPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPS 193
           P A  P P  PP +  P   +       +  + P     PPP +S P+ +P  P+    S
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS 420

Query: 194 NVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSS 253
            +     Q      +  A +        P   S  R        + S    P       +
Sbjct: 421 QLLAARQQLQRAQGATKAKKSE------PAAASRARPVNSALERLASVRPAPSALEKAPA 474

Query: 254 PE 255
            +
Sbjct: 475 KK 476

Length = 647

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 50.2 bits (121), Expect = 2e-06
 Identities = 25/111 (22%), Positives = 35/111 (31%), Gaps = 6/111 (5%)

Query: 153 PSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPT-PASPIA 211
           P++  P     P VPPQ+  P  S+        A        VPPPP   P   PA P+ 
Sbjct: 361 PAAPLPE----PEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLP 416

Query: 212 PRPSNSSPNSPPPPSTKRLSPPPGI-PVPSTENTPGNGTNPSSPESSSSPS 261
              S            +  +      P  ++   P N           +PS
Sbjct: 417 ETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPS 467

Length = 647

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 49.9 bits (120), Expect = 2e-06
 Identities = 13/80 (16%), Positives = 24/80 (30%)

Query: 129 SPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPI 188
              +  P  +   +   ++ P   P++  P   +P       P  PP  +    +  AP 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 189 AVPPSNVPPPPTQTPPTPAS 208
           A P +     P         
Sbjct: 98  APPAAAAAAAPAAAAVEDEV 117

Length = 1228

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.3 bits (121), Expect = 2e-06
 Identities = 25/88 (28%), Positives = 30/88 (34%), Gaps = 9/88 (10%)

Query: 91  PSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPP 150
           PS   S     S P           P P+ +PPP             +  PS PP+   P
Sbjct: 361 PSAFISEIANASAPAN-------PTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASP 413

Query: 151 PPPSSVEPPKRSPPSVPPQNPPPPPSSS 178
           P P   EP +  P   PP N    P S 
Sbjct: 414 PIPVPAEPTE--PSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 23/80 (28%), Positives = 31/80 (38%)

Query: 118 PSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSS 177
            S++    +PP P   PP  +P P  P      PPP+   PP  +  +        P  S
Sbjct: 515 GSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADS 574

Query: 178 SPPKNSPPAPIAVPPSNVPP 197
           SPP   P  P   P  +  P
Sbjct: 575 SPPPPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 22/82 (26%), Positives = 29/82 (35%), Gaps = 4/82 (4%)

Query: 128 PSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAP 187
           PS      AN+  P+NP     P PP +   P     +   +     PS  P K SPP P
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQP----SAPKTKQAATTPSPPPAKASPPIP 416

Query: 188 IAVPPSNVPPPPTQTPPTPASP 209
           +   P+   P P          
Sbjct: 417 VPAEPTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 13/110 (11%), Positives = 28/110 (25%), Gaps = 3/110 (2%)

Query: 30  PPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSP 89
           PP +  P ++ PPP  +    + P        P         +         +  P +  
Sbjct: 53  PPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPE 112

Query: 90  PPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSP 139
             +P A +    +           +  P    P   +  +        + 
Sbjct: 113 AQAPAAPAERAAAENAARRLARAAAAAPR---PRVPADAAAAVADAVKAR 159

Length = 484

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 4/72 (5%)

Query: 29  PPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSS 88
           P P S    +  P  P + PP  +PP  P A   P +++ PA +P    PP A+ PP  S
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARP-AAARPAPAPA---PPAAAAPPARS 437

Query: 89  PPPSPPASSPPT 100
             P+  AS+   
Sbjct: 438 ADPAAAASAGDR 449

Length = 576

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 15/97 (15%), Positives = 25/97 (25%)

Query: 34  NPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSP 93
           +       P   S     +  P+P A    T ++    +  T+  P       +   PS 
Sbjct: 155 SQNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQ 214

Query: 94  PASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSP 130
                     P   + P   +P P            P
Sbjct: 215 ANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADP 251

Length = 331

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 49.4 bits (119), Expect = 2e-06
 Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 7/79 (8%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKA----EVEIISRIHHRHLVSLV 429
           LGEG +G VYK      G  VA+K++++     E    +    E+ ++  + H ++V L+
Sbjct: 7   LGEGTYGVVYKARDKKTGEIVALKKIRL--DNEEEGIPSTALREISLLKELKHPNIVKLL 64

Query: 430 GYCISDDRRLLIYDYVPNN 448
               ++ +  L+++Y   +
Sbjct: 65  DVIHTERKLYLVFEYCDMD 83

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 34/146 (23%), Positives = 62/146 (42%), Gaps = 6/146 (4%)

Query: 44  PVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISP 103
           P  K    +  P+  A+ P  +++PPA +   ++P  A+  P  +  P   A++PP  + 
Sbjct: 211 PSGKKSAKAAAPAKAAAAPAKAAAPPAKA--AAAPAKAAAAPAKAAAPPAKAAAPPAKAA 268

Query: 104 PPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSP 163
            PP       + PP  +  PP    +PP+   A     +  P+     P  +  PP ++ 
Sbjct: 269 APPAK----AAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAA 324

Query: 164 PSVPPQNPPPPPSSSPPKNSPPAPIA 189
                   PP  +++PP  +  AP+ 
Sbjct: 325 APPAKAATPPAKAAAPPAKAAAAPVG 350

Length = 357

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 3/85 (3%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V  G      +VAIK +K  G   E EF  E +++ ++ H  LV L G C  
Sbjct: 12  LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMKLSHEKLVQLYGVCTK 70

Query: 435 DDRRLLIYDYVPNNTL--YFHLHGK 457
                ++ +Y+ N  L  Y   HGK
Sbjct: 71  QRPIYIVTEYMSNGCLLNYLREHGK 95

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 8/90 (8%)

Query: 375 LGEGGFGSVYKGY------LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSL 428
           LGEG FG V+           D   VA+K LK       ++F+ E E+++ + H H+V  
Sbjct: 13  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKF 72

Query: 429 VGYCISDDRRLLIYDYVPNNTL--YFHLHG 456
            G C   D  +++++Y+ +  L  +   HG
Sbjct: 73  YGVCGDGDPLIMVFEYMKHGDLNKFLRAHG 102

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V++G   +   VA+K LK G    + +F AE +I+ ++ H  L+ L   C  
Sbjct: 14  LGAGQFGEVWEGLWNNTTPVAVKTLKPGTMDPK-DFLAEAQIMKKLRHPKLIQLYAVCTL 72

Query: 435 DDRRLLIYDYVPNNTLYFHLHGK 457
           ++   ++ + +   +L  +L G 
Sbjct: 73  EEPIYIVTELMKYGSLLEYLQGG 95

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein UL32

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 49/286 (17%), Positives = 78/286 (27%), Gaps = 23/286 (8%)

Query: 5   SPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPP---PPVSKPPTTSPPPSPPASN 61
           + G  A    +P   V++  +I+            P P       K   +  PPS    +
Sbjct: 418 NSGILAWGLKTPGLAVNDERSIAVSSDGITDVLDPPSPLRLHSSDKVIDSVSPPSKRRVS 477

Query: 62  PPTSSSPPASSPPTSSPPPASNPP-----------TSSPPPSPPASSPPTISPPPPVSNP 110
            P S    A  P  ++ P +S              TSS   S  +             +P
Sbjct: 478 APASRLDDAKRPEVTATPESSGSDSEGGASGREDETSSDAESVVSIKELRPRIGFINKSP 537

Query: 111 PTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQN 170
           P +SPP    T       + PS   +  P PS                            
Sbjct: 538 PPKSPPKSRRTLIVALSLASPSTAGSPRPKPSLGKF--VIGTDPFAFANTVRLTDNMRGG 595

Query: 171 PPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSP---PPPST 227
                S  P  ++   P+  P S++  P T    TP+S +     N+  +S    P    
Sbjct: 596 NGVGSSVKPKGSASSKPLTGPGSDL-KPATLNGKTPSSSLVGAARNAGASSKVKIPSGLG 654

Query: 228 KRLSPPPG---IPVPSTENTPGNGTNPSSPESSSSPSNNGIGTAGT 270
              SP             +        + P    +      G   +
Sbjct: 655 GFTSPISLLESALEDVLTSATSTPVKKNDPYLWDTNGEKAGGGTES 700

The large phosphorylated protein (UL32-like) of herpes viruses is the polypeptide most frequently reactive in immuno-blotting analyses with antisera when compared with other viral proteins. Length = 777

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 10/92 (10%)

Query: 372 QNLLGEGGFGSV--YKGYLPD----GREVAIKQLKIGGGQGERE-FKAEVEIISRIHHRH 424
             +LGEG FG V  Y  Y P     G  VA+K LK   GQ     +K E+ I+  ++H +
Sbjct: 9   IRVLGEGHFGKVSLYC-YDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHEN 67

Query: 425 LVSLVGYCIS--DDRRLLIYDYVPNNTLYFHL 454
           +V   G C         LI +YVP  +L  +L
Sbjct: 68  IVKYKGCCSEQGGKGLQLIMEYVPLGSLRDYL 99

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 16/99 (16%)

Query: 1   MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS 60
            SAP+                 PP  +PP PV+ P  ++P   P + P   +  P+PPA 
Sbjct: 411 ASAPAA----------------PPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQ 454

Query: 61  NPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPP 99
             P + + P    P  +   A+  P ++P  +    +  
Sbjct: 455 AAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493

Length = 618

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 49.5 bits (119), Expect = 3e-06
 Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 3/86 (3%)

Query: 138 SPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPP 197
            P  +  P+       ++   P  +P +  P  P P P ++    +PP P A        
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAA---AA 93

Query: 198 PPTQTPPTPASPIAPRPSNSSPNSPP 223
                PP  A+  AP  +       P
Sbjct: 94  AAPAAPPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 49.5 bits (119), Expect = 3e-06
 Identities = 13/86 (15%), Positives = 24/86 (27%), Gaps = 3/86 (3%)

Query: 145 PSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPP 204
           P +   P  ++      +           P + +P   +  AP A P             
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAA---AA 94

Query: 205 TPASPIAPRPSNSSPNSPPPPSTKRL 230
            PA+P A   + +   +        L
Sbjct: 95  APAAPPAAAAAAAPAAAAVEDEVTPL 120

Length = 1228

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.6 bits (119), Expect = 3e-06
 Identities = 21/75 (28%), Positives = 31/75 (41%)

Query: 26  ISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPP 85
                  ++ P +  P P  S PP    P +P      T+ SPP +      P PA    
Sbjct: 364 FISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTE 423

Query: 86  TSSPPPSPPASSPPT 100
            S  PP+  A++PP+
Sbjct: 424 PSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 49.3 bits (117), Expect = 3e-06
 Identities = 44/163 (26%), Positives = 67/163 (41%), Gaps = 7/163 (4%)

Query: 8   PPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPP--PPPVSKPPTTSPPPSPPASNPPTS 65
           PP    +   P  +    I   P  +      P    P   +PP  +P P  P + PP  
Sbjct: 654 PPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGR 713

Query: 66  SSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTR--SPPPPSSTPP 123
           +  PA++    + PPA+ P  + PP + P  + P  + P     P        PP++ P 
Sbjct: 714 AQRPAAAT-GRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPG 772

Query: 124 PNSPPSPPSDPPANSPPPSNPPSNLPPP--PPSSVEPPKRSPP 164
             +P  PP  PPA    P   P+  PPP   P+S++   R+ P
Sbjct: 773 APTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAP 815

Length = 991

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 49.8 bits (118), Expect = 3e-06
 Identities = 61/274 (22%), Positives = 99/274 (36%), Gaps = 12/274 (4%)

Query: 4   PSPGPPAANSSSPPPPVSNPPT-ISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
           P+ G P   +SS  P  ++P +  +   P +  P  +   P  + P T     +P A++P
Sbjct: 469 PTSGTPTGTTSSTLPEDTSPTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSP 528

Query: 63  P---TSSSPPASSPPTS--SPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPP 117
                  +  A+SPPT   S P A++P  +   P    ++P   S P  +++  T     
Sbjct: 529 TPIVIGVTTTATSPPTGTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHG 588

Query: 118 PSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSS 177
             S+P    P  P S         ++    L    P+  E      PSVP        S 
Sbjct: 589 TGSSPTSQQPGIPSSSHSTPRSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSP 648

Query: 178 SPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIP 237
            P   +         S+    P +   T   P      N +  SP  PS ++ + P    
Sbjct: 649 GPGPGTTSQVSGPGNSSTSRYPGEVHVTEGMP------NPNATSPSAPSGQKTAVPTVTS 702

Query: 238 VPSTENTPGNGTNPSSPESSSSPSNNGIGTAGTV 271
                N+    T+ S+  +S+SP  N      T 
Sbjct: 703 TGGKANSTTKETSGSTLMASTSPHTNEGAFRTTP 736

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 10/111 (9%)

Query: 1   MSAPSPGPPAANSSSPPPPVSNPPTISPP---PPVSNPPKSSPPPPPV--SKPPTTSP-- 53
           ++A +P   AA +++ PPP + P  +S P        P             +        
Sbjct: 48  LAALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAA 107

Query: 54  PPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPP 104
           P +P A  P   +   A+          +    ++P P  PA +   ++  
Sbjct: 108 PAAPEAQAPAAPAERAAAENA---ARRLARAAAAAPRPRVPADAAAAVADA 155

Length = 484

>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional

 Score = 49.7 bits (118), Expect = 3e-06
 Identities = 39/133 (29%), Positives = 53/133 (39%), Gaps = 14/133 (10%)

Query: 31  PVSNPPKSSPP--PPPVSKPPTTSPPPS-PPASNPPTSSSPPASSPPTSSPPPASNPPTS 87
             SNP  S+P     P S  P  +PP S  P SNPP S+ P ++ P +++P   SN P S
Sbjct: 413 GYSNPGNSNPGYNNAPNSNTPYNNPPNSNTPYSNPPNSNPPYSNLPYSNTP--YSNAPLS 470

Query: 88  SPPPSPPASSPPTISPP-------PPVSNPPTRSPPP--PSSTPPPNSPPSPPSDPPANS 138
           + PPS                    P +N PT + P          NS  +P +  P  S
Sbjct: 471 NAPPSSAKDHHSAYHAAYQHRAANQPAANLPTANQPAANNFHGAAGNSVGNPFASRPFGS 530

Query: 139 PPPSNPPSNLPPP 151
            P     +    P
Sbjct: 531 APYGGNAATTADP 543

Length = 1560

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 48.6 bits (117), Expect = 3e-06
 Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 369 FADQNLLGEGGFGSVYKG-YLPDGREVAIKQLKIGG-GQGEREF-KAEVEIISRIHHRHL 425
           +     +G+G FG VY      DG+   +K++ +    + ERE    EV+I+ +++H ++
Sbjct: 2   YEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNI 61

Query: 426 VSLVGYCISDDRRLLIYDYVPNNTLYFHLH 455
           +          +  ++ +Y     L   + 
Sbjct: 62  IKYYESFEEKGKLCIVMEYADGGDLSQKIK 91

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|220749 pfam10428, SOG2, RAM signalling pathway protein

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 29/117 (24%), Positives = 40/117 (34%), Gaps = 5/117 (4%)

Query: 25  TISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNP 84
           ++ PP         +  P  +    T       P S  PT    P+SSP + S P     
Sbjct: 147 SLGPPLQHRKRDAVTASPSSMIARNTPISDRLRPRSVTPTRGRRPSSSPRSLSNPTTLES 206

Query: 85  PT--SSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSP 139
           P+        PP  S  T S    +S+    S     +T  P S  S  S P + S 
Sbjct: 207 PSNLQVTTDVPPPYSNGT-SRSSTMSSSANLSIISSLAT--PRSGESFRSTPTSGSS 260

SOG2 proteins in Saccharomyces cerevisiae are involved in cell separation and cytokinesis. Length = 419

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 16/89 (17%)

Query: 368 GFADQNLLGEGGFGSVYKGYL---PDGREVAIKQLKIGGGQGE-------REFKAEVEII 417
            +  +  +G G +G VYK       DG+E AIK+ K    Q         RE    + ++
Sbjct: 1   KYEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACRE----IALL 56

Query: 418 SRIHHRHLVSLVGYCISD-DRRL-LIYDY 444
             + H ++VSLV   +   D+ + L++DY
Sbjct: 57  RELKHENVVSLVEVFLEHADKSVYLLFDY 85

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 49.1 bits (118), Expect = 4e-06
 Identities = 13/78 (16%), Positives = 23/78 (29%)

Query: 135 PANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSN 194
           P ++  P+   +       +    P    P+ P   PP   + + P     A  A     
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 195 VPPPPTQTPPTPASPIAP 212
            PP         A+ +  
Sbjct: 98  APPAAAAAAAPAAAAVED 115

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 49.1 bits (118), Expect = 4e-06
 Identities = 14/72 (19%), Positives = 26/72 (36%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
              +    AA +S+P    +     +P P        + PP P +     + P +PPA+ 
Sbjct: 44  PTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAA 103

Query: 62  PPTSSSPPASSP 73
              + +  A   
Sbjct: 104 AAAAPAAAAVED 115

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 49.1 bits (118), Expect = 4e-06
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 1/87 (1%)

Query: 152 PPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSP-PAPIAVPPSNVPPPPTQTPPTPASPI 210
           P S+  P   +  +    + P    ++    +P PAP A      PP P       A+P 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 211 APRPSNSSPNSPPPPSTKRLSPPPGIP 237
           AP  + ++           ++P  G  
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTPLRGAA 124

Length = 1228

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.8 bits (117), Expect = 4e-06
 Identities = 18/79 (22%), Positives = 26/79 (32%)

Query: 87  SSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPS 146
            S   S  A++    +P P  +  P  +P  PS+     +  +P   P   SPP   P  
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 147 NLPPPPPSSVEPPKRSPPS 165
              P P          P  
Sbjct: 421 PTEPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 27/138 (19%), Positives = 35/138 (25%), Gaps = 12/138 (8%)

Query: 91  PSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPP 150
               A +          S  P     PP ++  P  P   P +          P    P 
Sbjct: 70  RVNHAPANAQEHEAARPS--PQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQ 127

Query: 151 PPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPI 210
           P      P  +  P  P Q P  P  +  P+    AP        P      P  P +  
Sbjct: 128 PVQQ---PAYQPQPEQPLQQPVSPQVAPAPQPVHSAP-------QPAQQAFQPAEPVAAP 177

Query: 211 APRPSNSSPNSPPPPSTK 228
            P P          P  K
Sbjct: 178 QPEPVAEPAPVMDKPKRK 195

Length = 333

>gnl|CDD|217835 pfam03999, MAP65_ASE1, Microtubule associated protein (MAP65/ASE1 family)

 Score = 49.1 bits (117), Expect = 4e-06
 Identities = 34/180 (18%), Positives = 50/180 (27%), Gaps = 6/180 (3%)

Query: 33  SNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPP--PASNPPTSSPP 90
               K +     V +PP  S   S P S P T  +    +  T S    P     + S  
Sbjct: 444 KARKKLANKTSTVMEPPYGSTESSVP-STPSTRRNDRNITSNTPSLKRTPNLTKSSLSQE 502

Query: 91  PSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPP 150
            S  + S              T    P +S     +     ++    S   S+P S    
Sbjct: 503 ASLISKSTGNTHKHSTPRRLTTLPKLPAASRSSKGNLIRSGAN-GNASSDLSSPGSINSK 561

Query: 151 PPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPI 210
            P  SV  P      +  +        S P  +      +  S + PP      TP    
Sbjct: 562 SPEHSV--PLVRVFDIHLRASTTKGRHSTPSTNEKKKRLLKRSPLSPPKESVATTPRLNS 619

Length = 619

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 48.8 bits (117), Expect = 4e-06
 Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 5/105 (4%)

Query: 20  VSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSP- 78
           ++ P   +P       P  +  P  VS+P   +  P+P         +         +  
Sbjct: 51  LAPPAAAAPAAA---QPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAA 107

Query: 79  PPASNPPTSSPPPSPPASSPPTI-SPPPPVSNPPTRSPPPPSSTP 122
           P A      + P    A+            + P  R P   ++  
Sbjct: 108 PAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAV 152

Length = 484

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 48.8 bits (117), Expect = 4e-06
 Identities = 21/107 (19%), Positives = 32/107 (29%), Gaps = 8/107 (7%)

Query: 29  PPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSS 88
           PP  + P  + PPP      P     P+ PA+ P     P                   +
Sbjct: 53  PPAAAAPAAAQPPPAA---APAAVSRPAAPAAEPA----PWLVEHAKRLTAQREQLVARA 105

Query: 89  P-PPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDP 134
             P +P A +P   +      N   R     ++ P P  P    +  
Sbjct: 106 AAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAV 152

Length = 484

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 49.3 bits (117), Expect = 4e-06
 Identities = 41/224 (18%), Positives = 59/224 (26%), Gaps = 9/224 (4%)

Query: 27  SPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTS---SPPPASN 83
           +P  PV+  P  +    P ++P     P   P +  P  +  P   P  S    P    N
Sbjct: 335 APVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYN 394

Query: 84  PPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSN 143
            P   P         P    P            P        +P  P +     +    +
Sbjct: 395 EPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQS 454

Query: 144 P--PSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPP----SNVPP 197
              P +      +  +P  + P    PQ     P   P         A PP      V  
Sbjct: 455 TFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEE 514

Query: 198 PPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPST 241
              +     A+   P P       P   S K  S     PV + 
Sbjct: 515 KRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAA 558

Length = 1355

>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional

 Score = 49.3 bits (117), Expect = 4e-06
 Identities = 54/208 (25%), Positives = 84/208 (40%), Gaps = 25/208 (12%)

Query: 58  PASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPP---PPVSNPPTRS 114
           P SN  + +    S+   S+   ++   +++   +P  S+P   + P    P +NPP  +
Sbjct: 383 PHSNA-SYNCAAYSNAAQSNAAQSNAGFSNAGYSNPGNSNPGYNNAPNSNTPYNNPPNSN 441

Query: 115 PPPPSSTPPPNSPPSPPSDPPANSPPPSNPP-SNLPPPPPSSVEPPKRSPPSVPPQNPPP 173
            P    + PPNS P P S+ P ++ P SN P SN   PP S+ +       +   +    
Sbjct: 442 TP---YSNPPNSNP-PYSNLPYSNTPYSNAPLSN--APPSSAKDHHSAYHAAYQHRAANQ 495

Query: 174 PPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPP 233
           P ++ P  N P A                  +  +P A RP  S+P      +T   + P
Sbjct: 496 PAANLPTANQPAA---------NNFHGAAGNSVGNPFASRPFGSAPYGGNAATT---ADP 543

Query: 234 PGIPVPSTENTPGNGTNPSSPESSSSPS 261
            GI     E+ P  GTN    E S   S
Sbjct: 544 NGI--AKREDHPEGGTNRQKYEQSDEES 569

Length = 1560

>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional

 Score = 49.3 bits (117), Expect = 4e-06
 Identities = 37/136 (27%), Positives = 51/136 (37%), Gaps = 29/136 (21%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPP---PPVSNPPKSSPP-------PPPVSKPPTT 51
           +A    P  +N      P SN P  +PP    P SNPP S+PP         P S  P +
Sbjct: 411 NAGYSNPGNSNPGYNNAPNSNTPYNNPPNSNTPYSNPPNSNPPYSNLPYSNTPYSNAPLS 470

Query: 52  SPPPSP-------------------PASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPS 92
           + PPS                    PA+N PT++ P A++   ++     NP  S P  S
Sbjct: 471 NAPPSSAKDHHSAYHAAYQHRAANQPAANLPTANQPAANNFHGAAGNSVGNPFASRPFGS 530

Query: 93  PPASSPPTISPPPPVS 108
            P       +  P   
Sbjct: 531 APYGGNAATTADPNGI 546

Length = 1560

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 48.4 bits (114), Expect = 4e-06
 Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 3/139 (2%)

Query: 76  SSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPS-STPPPNSPPSPPSDP 134
           ++ P       ++ P    A+     +PP   +  P ++   P+ +  PP    +PP+  
Sbjct: 208 AAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKA 267

Query: 135 PANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNS--PPAPIAVPP 192
            A     + PP+    PP  +  PP ++  +       P  +++ P  +  PPA  A PP
Sbjct: 268 AAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPP 327

Query: 193 SNVPPPPTQTPPTPASPIA 211
           +    PP +    PA   A
Sbjct: 328 AKAATPPAKAAAPPAKAAA 346

Length = 357

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 48.6 bits (114), Expect = 4e-06
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 6/110 (5%)

Query: 368 GFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGG---GQGEREFKAEVEIISRI-HHR 423
            +     LGEG FG VY     D + VA+K L        +    F  E++I++ + H  
Sbjct: 1   SYRILRKLGEGSFGEVYLAR--DRKLVALKVLAKKLESKSKEVERFLREIQILASLNHPP 58

Query: 424 HLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLI 473
           ++V L  +   +    L+ +YV   +L   L    + G    +    +L 
Sbjct: 59  NIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILA 108

Length = 384

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 18/94 (19%)

Query: 375 LGEGGFGSVY------------KGYLPDGRE-----VAIKQLKIGGGQGER-EFKAEVEI 416
           LGEG FG V+            K +  +        VA+K L+       R +F  EV+I
Sbjct: 13  LGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKI 72

Query: 417 ISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL 450
           +SR+   ++  L+G C  D    +I +Y+ N  L
Sbjct: 73  LSRLSDPNIARLLGVCTVDPPLCMIMEYMENGDL 106

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 48.0 bits (115), Expect = 4e-06
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVG 430
           +GEG  G VYK      G+EVAIK++++   Q +     E+ I+    H ++V    
Sbjct: 27  IGEGASGEVYKATDRATGKEVAIKKMRL-RKQNKELIINEILIMKDCKHPNIVDYYD 82

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 48.8 bits (116), Expect = 5e-06
 Identities = 63/251 (25%), Positives = 82/251 (32%), Gaps = 37/251 (14%)

Query: 4   PSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKS-----------------SPPPPPVS 46
           P     AA+   P P     P    PP    PP+                   PP  P+ 
Sbjct: 329 PPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLKPPTSPIP 388

Query: 47  KPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISP--- 103
            PP++SP     +S    + + PA      SP  ASN P   P       + P +SP   
Sbjct: 389 TPPSSSP----ASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRP-LSPYAR 443

Query: 104 ----PPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANS------PPPSNPPSNLPPPPP 153
                PP S  PT       S    +S P+ P   PA +      PPP+N     P    
Sbjct: 444 YEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVY 503

Query: 154 SSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPR 213
             ++PP    P+ P     P  ++   K    AP             Q  P P SP    
Sbjct: 504 DDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADE--QHHAQPKPRPLSPYTMY 561

Query: 214 PSNSSPNSPPP 224
                P SP P
Sbjct: 562 EDLKPPTSPTP 572

Length = 576

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 48.4 bits (116), Expect = 5e-06
 Identities = 17/115 (14%), Positives = 36/115 (31%), Gaps = 7/115 (6%)

Query: 77  SPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTP--PPNSPPSPPSDP 134
           +PP A+ P  + PPP+   ++    + P     P         +       +  + P+ P
Sbjct: 52  APPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAP 111

Query: 135 PANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIA 189
            A +P      +                     P+   P  +++   ++  A I 
Sbjct: 112 EAQAPAAPAERAAAENAARRLARAAAA-----APRPRVPADAAAAVADAVKARIE 161

Length = 484

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.4 bits (116), Expect = 6e-06
 Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 140 PPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPP 199
             ++  +  PPPP  S  PP  +PP   PQ     P  +PP   P A  A   +    P 
Sbjct: 515 GSASNTAKTPPPPQKSPPPPAPTPP--LPQPTATAPPPTPPPPPPTATQASSNAPAQIPA 572

Query: 200 TQTPPTPASPIAPRPSNSSPNSPPP 224
             +PP    PI   P+ S      P
Sbjct: 573 DSSPP---PPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.4 bits (116), Expect = 6e-06
 Identities = 18/76 (23%), Positives = 24/76 (31%)

Query: 123 PPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKN 182
              S  +  S P   +P P+  P   P  P +       + PS PP    PP        
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPT 422

Query: 183 SPPAPIAVPPSNVPPP 198
            P        +N PP 
Sbjct: 423 EPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 27/123 (21%), Positives = 36/123 (29%), Gaps = 5/123 (4%)

Query: 27  SPPPPVSNPPKSSPPPPPV--SKPPTTSPPPSPPASNPPTSSSPPASS--PPTSSPPPAS 82
               P +     +  P P    +PP  S  P  P   PP +  PP  +  P   +P P  
Sbjct: 71  VNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQ 130

Query: 83  NPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPS 142
            P     P  P          P P        P   +  P        P +P A   P  
Sbjct: 131 QPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQP-EPVAEPAPVM 189

Query: 143 NPP 145
           + P
Sbjct: 190 DKP 192

Length = 333

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.2 bits (115), Expect = 6e-06
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
           AP+P   A  + +P  P       + PPP + PP     P   +       P  P A+ P
Sbjct: 381 APAPPSAAWGAPTPAAP-------AAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAP 433

Query: 63  PTSSSPPASSPPT 75
           P  S+ PA++   
Sbjct: 434 PARSADPAAAASA 446

Length = 576

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V+ G      +VAIK ++  G   E +F  E +++ ++ H +LV L G C  
Sbjct: 12  LGSGQFGVVHLGKWRGKIDVAIKMIR-EGAMSEDDFIEEAKVMMKLSHPNLVQLYGVCTK 70

Query: 435 DDRRLLIYDYVPNNTL 450
                ++ +Y+ N  L
Sbjct: 71  QRPIFIVTEYMANGCL 86

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.4 bits (116), Expect = 6e-06
 Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 3/74 (4%)

Query: 53  PPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPT 112
           PP        P        +P  ++ P A+    ++  P+   ++ P  +        P 
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPA 450

Query: 113 RSPPPPSSTPPPNS 126
            +P P       NS
Sbjct: 451 AAPQPA---VRLNS 461

Length = 598

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 48.8 bits (116), Expect = 7e-06
 Identities = 52/207 (25%), Positives = 73/207 (35%), Gaps = 36/207 (17%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKS----------SPPPPPVSKPPTT 51
           +AP  G   A  +  P  +  PP   PP P  +  +           SP P P    P  
Sbjct: 291 AAPPDGVWGAALAGAPLALPAPPDPPPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLG 350

Query: 52  SPPPSPPASNPPTS--------SSPPASSPPTS---SPPPASNP--------PTSSPPPS 92
            P    P   PP+S          P  +S PT    S   A+ P          + P   
Sbjct: 351 FPKRRRPTWTPPSSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAP 410

Query: 93  PPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPP 152
            PAS P     P P S PP  + P PS+ P  +  P+PP       P    P     P P
Sbjct: 411 VPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPP-------PERQPPAPATEPAP 463

Query: 153 PSSVEPPKRSPPSVPPQNPPPPPSSSP 179
               +  +++  ++  + PP PP +  
Sbjct: 464 DDPDDATRKALDALRERRPPEPPGADL 490

Length = 3151

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.0 bits (115), Expect = 7e-06
 Identities = 17/78 (21%), Positives = 28/78 (35%)

Query: 38  SSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASS 97
            S     ++     + P   P  +PP +   P++     +    S PP  + PP P  + 
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 98  PPTISPPPPVSNPPTRSP 115
           P   SP PP +       
Sbjct: 421 PTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|217835 pfam03999, MAP65_ASE1, Microtubule associated protein (MAP65/ASE1 family)

 Score = 48.3 bits (115), Expect = 7e-06
 Identities = 36/182 (19%), Positives = 52/182 (28%), Gaps = 13/182 (7%)

Query: 1   MSAPSPGPPAANSSS---PPPPVSNPPTI-SPPPPVSNPPKSSPPPPPVSKPPTTSPPPS 56
                     AN +S    PP  S   ++ S P    N    +   P + + P  +    
Sbjct: 440 KQRAKARKKLANKTSTVMEPPYGSTESSVPSTPSTRRNDRNITSNTPSLKRTPNLTKS-- 497

Query: 57  PPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPP 116
              S    +S    S+  T          T    P+   SS   +       N  +    
Sbjct: 498 ---SLSQEASLISKSTGNTHKHSTPRRLTTLPKLPAASRSSKGNLIRSGANGNASSDLSS 554

Query: 117 PPS--STPPPNS-PPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPP 173
           P S  S  P +S P     D    +       S  P          KRSP S P ++   
Sbjct: 555 PGSINSKSPEHSVPLVRVFDIHLRASTTKGRHST-PSTNEKKKRLLKRSPLSPPKESVAT 613

Query: 174 PP 175
            P
Sbjct: 614 TP 615

Length = 619

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 47.8 bits (114), Expect = 7e-06
 Identities = 25/159 (15%), Positives = 31/159 (19%), Gaps = 18/159 (11%)

Query: 48  PPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPV 107
           P   SP   PP +  P     P  +    + P       ++P       SP     PP  
Sbjct: 48  PWDPSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTP-----TGSPAA--NPPAT 100

Query: 108 SNPPTRSPPPPSSTPP-PNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSV 166
              P     P   T P    P   P     N                             
Sbjct: 101 FALPAGPAGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRAL----------QQLQ 150

Query: 167 PPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPT 205
                P        + S            P   T    T
Sbjct: 151 QRYGAPASGQLPSQQQSAQKNDESQLQQQPNGETPPQQT 189

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 1/85 (1%)

Query: 154 SSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTP-PTPASPIAP 212
           S+   P  +P    P +  P  S +P   + PAP   P  N    P+Q    T A+P   
Sbjct: 167 STTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPA 226

Query: 213 RPSNSSPNSPPPPSTKRLSPPPGIP 237
            P+     +P P     +S P   P
Sbjct: 227 APATPDGAAPLPTDQAGVSTPAADP 251

Length = 331

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 48.2 bits (115), Expect = 8e-06
 Identities = 37/187 (19%), Positives = 52/187 (27%), Gaps = 5/187 (2%)

Query: 30  PPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSP 89
            P   P K +     +          S P      +   P     +     A++   S  
Sbjct: 760 NPSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKR 819

Query: 90  PPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLP 149
                     + S  P         PPP  S+    S P+              P    P
Sbjct: 820 KSRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEP 879

Query: 150 PPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSN-----VPPPPTQTPP 204
              P +  PPK +  + P   P P P  +P     P P   P        VPP    TP 
Sbjct: 880 RARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPMPPGGPDPRGGFRRVPPGDLHTPA 939

Query: 205 TPASPIA 211
             A+ +A
Sbjct: 940 PSAAALA 946

Length = 1352

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.9 bits (114), Expect = 8e-06
 Identities = 24/92 (26%), Positives = 31/92 (33%), Gaps = 6/92 (6%)

Query: 149 PPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPAS 208
           P P P   +P   +  +  P  P P PS+ P   +        P      P   PP P +
Sbjct: 362 PVPAPQPAKP---TAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVA 418

Query: 209 PIAPRPSNSSPNSPP---PPSTKRLSPPPGIP 237
           P  P    S+P       P   K    PP  P
Sbjct: 419 PPVPHTPESAPKLTRAAIPVDEKPKYTPPAPP 450

Length = 585

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 47.3 bits (113), Expect = 8e-06
 Identities = 32/107 (29%), Positives = 40/107 (37%), Gaps = 6/107 (5%)

Query: 8   PPAANSSSPPPPVSNPPTIS-PPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSS 66
            P   S+ P  PV  PP    PP     P + +P P      P   P P  P   P +  
Sbjct: 93  QPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQ---QPAYQPQPEQPLQQPVSPQ 149

Query: 67  SPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTR 113
             PA  P  S+P PA       P     A  P  ++ P PV + P R
Sbjct: 150 VAPAPQPVHSAPQPA--QQAFQPAEPVAAPQPEPVAEPAPVMDKPKR 194

Length = 333

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 75  TSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDP 134
             +PP A+    +   P+ P   PP  +PP P + P   +   P+  P P +  +PP+  
Sbjct: 381 APAPPSAAWGAPTPAAPAAP---PPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARS 437

Query: 135 PANSPPPSNPPS 146
              +   S    
Sbjct: 438 ADPAAAASAGDR 449

Length = 576

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 47.3 bits (113), Expect = 8e-06
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 3/80 (3%)

Query: 374 LLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQGEREFKA--EVEIISRIHHRHLVSLVG 430
           ++GEG +G V K      G  VAIK+ K      + +  A  EV+++ ++ H ++V+L  
Sbjct: 8   VVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKE 67

Query: 431 YCISDDRRLLIYDYVPNNTL 450
                 R  L+++YV    L
Sbjct: 68  AFRRKGRLYLVFEYVERTLL 87

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 47.3 bits (111), Expect = 9e-06
 Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 5/136 (3%)

Query: 30  PPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSP 89
           P      K++ P    + P   + PP+  A+ P  +++ PA +   + P  A+ PP  + 
Sbjct: 211 PSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKA--AAPPAKAAAPPAKAA 268

Query: 90  PPSPPASSPP--TISPPPPVSNPPTRSPPPPSST-PPPNSPPSPPSDPPANSPPPSNPPS 146
            P   A++PP    +PP   + PP ++   P+     P    + P+   A     + PP+
Sbjct: 269 APPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPA 328

Query: 147 NLPPPPPSSVEPPKRS 162
               PP  +  PP ++
Sbjct: 329 KAATPPAKAAAPPAKA 344

Length = 357

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 47.3 bits (111), Expect = 9e-06
 Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 7/159 (4%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPT-TSPPPSPPAS 60
           +A +    AA  ++ P    +    +P    + P K++ PP   +  P   +  P+  A+
Sbjct: 196 AAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAA 255

Query: 61  NPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSS 120
            P  +++PPA +   + P  A+ PP  +  P   A++PP  +     + P   +  P  +
Sbjct: 256 PPAKAAAPPAKA--AAPPAKAAAPPAKAAAPPAKAAAPPAKA----AAAPAKAAAAPAKA 309

Query: 121 TPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPP 159
              P    +PP+   A     + PP+    PP  +   P
Sbjct: 310 AAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAAP 348

Length = 357

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 48/192 (25%), Positives = 69/192 (35%), Gaps = 19/192 (9%)

Query: 2   SAPSPGPPAANSSSPPP--PVSNPPTISPPP---PVSNPPKSSPPPPPVSKPPTTSP--- 53
           ++P P PP+++ +S      V+ P      P     SN P+  P      K    SP   
Sbjct: 384 TSPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYAR 443

Query: 54  -----PPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSS---PPPSPPASSPPTISPPP 105
                PP+ P+   PT  SP  SS  +    P + P T++     P P    P +     
Sbjct: 444 YEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVY 503

Query: 106 PVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPS--NLPPPPPSSVEPPKRSP 163
               PPT SP P +         +       NS PP+      +   P P  + P     
Sbjct: 504 DDLKPPT-SPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQPKPRPLSPYTMYE 562

Query: 164 PSVPPQNPPPPP 175
              PP +P P P
Sbjct: 563 DLKPPTSPTPSP 574

Length = 576

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 37/182 (20%), Positives = 48/182 (26%), Gaps = 12/182 (6%)

Query: 4   PSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPP 63
           P PG         P     PP +     +   P + P  P   + P     P        
Sbjct: 111 PRPGRRPYEGYGGPRADDRPPGLPRQDQL---PTARPAYPAYQQRPEPGAWPRAADDYGW 167

Query: 64  --TSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPS-- 119
                  P  +P      PAS  P       P  +  P         + P      P   
Sbjct: 168 QQQRLGFPPRAPY---ASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDWDRPRRD 224

Query: 120 STPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSP 179
            T  P  PP           PP    + + P  PS+  P    P   P   P  P +   
Sbjct: 225 RTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRPSAPGPLAAQPAPAP--GPGEPTARLN 282

Query: 180 PK 181
           PK
Sbjct: 283 PK 284

Length = 617

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 15/78 (19%), Positives = 26/78 (33%)

Query: 17  PPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTS 76
           P    +    +  P    P  +  PPP   +P       +    +PP + + P    P  
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 77  SPPPASNPPTSSPPPSPP 94
              P+  PP ++    P 
Sbjct: 421 PTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 19/75 (25%), Positives = 26/75 (34%)

Query: 6   PGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTS 65
                AN+S+P  P   P    PP P+      +        PP     P  P    PT 
Sbjct: 364 FISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTE 423

Query: 66  SSPPASSPPTSSPPP 80
            SP   +   ++PP 
Sbjct: 424 PSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 1/81 (1%)

Query: 154 SSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPR 213
            S      +    PPQ  PPPP+ +PP   P A  A PP+  PPPPT T  +  +P    
Sbjct: 513 QSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTAT-APPPTPPPPPPTATQASSNAPAQIP 571

Query: 214 PSNSSPNSPPPPSTKRLSPPP 234
             +S P   P   T   +   
Sbjct: 572 ADSSPPPPIPEEPTPSPTKDS 592

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 21/78 (26%), Positives = 28/78 (35%)

Query: 28  PPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTS 87
           P   +S    +S P  P   P  + PP     S P T  +    SPP +   P    P  
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 88  SPPPSPPASSPPTISPPP 105
              PSP   +    +PP 
Sbjct: 421 PTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 31/119 (26%), Positives = 35/119 (29%), Gaps = 19/119 (15%)

Query: 85  PTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPP---PNSPPSPPSDPPANSPPP 141
                 PSP  S       P P    P R P P     P   P   PSP S P     PP
Sbjct: 376 NDGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPP 435

Query: 142 SNPPSNLPPPPPSSVEPPKRS-PPSV---------------PPQNPPPPPSSSPPKNSP 184
               + LPP P +S      S  P V                 +  P   SSS    + 
Sbjct: 436 VARSAPLPPSPQASAPRNVASGKPGVDLGSWQGKFMNFTRNGSRKQPVQASSSDAAQTG 494

Length = 620

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 7/75 (9%)

Query: 91  PSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPP 150
           P+PP+++    +P  P + PP  +PP      PP +P  P +  PA +P P    +  PP
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPP-----VPPAAPARPAAARPAPAPAPPAAAA--PP 434

Query: 151 PPPSSVEPPKRSPPS 165
              +       +   
Sbjct: 435 ARSADPAAAASAGDR 449

Length = 576

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 11/82 (13%), Positives = 29/82 (35%)

Query: 65  SSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPP 124
           +++ PA++P  ++P   +   + +P  +   +          V+          +  P  
Sbjct: 168 TTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAA 227

Query: 125 NSPPSPPSDPPANSPPPSNPPS 146
            + P   +  P +    S P +
Sbjct: 228 PATPDGAAPLPTDQAGVSTPAA 249

Length = 331

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 16/92 (17%)

Query: 375 LGEGGFGSVY----KGYLP---------DGRE--VAIKQLKIGGGQGER-EFKAEVEIIS 418
           LGEG FG V+    +G            DG+   VA+K L+    +  R +F  E++I+S
Sbjct: 13  LGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMS 72

Query: 419 RIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL 450
           R+ + +++ L+G C+SDD   +I +Y+ N  L
Sbjct: 73  RLKNPNIIRLLGVCVSDDPLCMITEYMENGDL 104

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 6/83 (7%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQLKIG--GGQGE---REFKAEVEIISRIHHRHLVS 427
           LLG G FGSVY+G  L DG   A+K++ +   G  G+   ++ + E+ ++S++ H ++V 
Sbjct: 7   LLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQ 66

Query: 428 LVGYCISDDRRLLIYDYVPNNTL 450
            +G    +D   +  + VP  +L
Sbjct: 67  YLGTEREEDNLYIFLELVPGGSL 89

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|183558 PRK12495, PRK12495, hypothetical protein; Provisional

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 5/90 (5%)

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISP-PPPVSNP----PTRSPPP 117
           P+ +   AS    + P   +     S PP   ++S    +   PP +      PT  P  
Sbjct: 87  PSDAGSQASPDDDAQPAAEAEAADQSAPPEASSTSATDEAATDPPATAAARDGPTPDPTA 146

Query: 118 PSSTPPPNSPPSPPSDPPANSPPPSNPPSN 147
             +TP     P          P PS P ++
Sbjct: 147 QPATPDERRSPRQRPPVSGEPPTPSTPDAH 176

Length = 226

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)

Query: 374 LLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQGE-----REFKAEVEIISRIHHRHLVS 427
           LLG+G FG VY  Y  D GRE+A+KQ+       E        + E++++  + H  +V 
Sbjct: 9   LLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQ 68

Query: 428 LVGYCISDDRRLLIY-DYVPNNTLYFHL 454
             G C+ DD  L I+ +Y+P  ++   L
Sbjct: 69  YYG-CLRDDETLSIFMEYMPGGSVKDQL 95

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 4/82 (4%)

Query: 104 PPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSP 163
           P    +    +  P + TP PN  P P    P  S P +   +  P PPP+   PP   P
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQP--SAPKTKQAATTPSPPPAKASPPI--P 416

Query: 164 PSVPPQNPPPPPSSSPPKNSPP 185
               P  P P P ++     P 
Sbjct: 417 VPAEPTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 18/87 (20%), Positives = 25/87 (28%), Gaps = 3/87 (3%)

Query: 146 SNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPT 205
            +      +   PP   P   PP   P PP   P   +PP     PP       +  P  
Sbjct: 513 QSGSASNTAKTPPP---PQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQ 569

Query: 206 PASPIAPRPSNSSPNSPPPPSTKRLSP 232
             +  +P P      +P P        
Sbjct: 570 IPADSSPPPPIPEEPTPSPTKDSSPEE 596

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 23/83 (27%), Positives = 30/83 (36%)

Query: 162 SPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNS 221
           S  +      PPPP  SPP  +P  P+  P +  PPP    PP  A+  +       P  
Sbjct: 514 SGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPAD 573

Query: 222 PPPPSTKRLSPPPGIPVPSTENT 244
             PP      P P     S+   
Sbjct: 574 SSPPPPIPEEPTPSPTKDSSPEE 596

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 22/99 (22%), Positives = 32/99 (32%), Gaps = 1/99 (1%)

Query: 103 PPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRS 162
           P   +S     S P   +  P  SPP  P  P A     +    + PP   S   P    
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 163 PPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQ 201
           P    P  P    ++ P  N       +  + +  P T+
Sbjct: 421 PTEPSPTPPANAANAPPSLNLEELWQQI-LAKLELPSTR 458

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 19/81 (23%), Positives = 25/81 (30%), Gaps = 3/81 (3%)

Query: 125 NSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSP 184
            S         +    P+  P+  PPP P     PK    +  P  PP   S   P  + 
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 185 PAPIAVPPSNVPPPPTQTPPT 205
           P     P    P      PP+
Sbjct: 421 PTE---PSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 47.0 bits (111), Expect = 2e-05
 Identities = 33/186 (17%), Positives = 48/186 (25%), Gaps = 11/186 (5%)

Query: 58  PASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPP---------PVS 108
           P  N    + P A +   ++   +   P      +PP +S       P         P +
Sbjct: 309 PLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQT 368

Query: 109 NPPTRSPPPPSSTPPPN-SPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVP 167
             P  +P P         + P+   + P   P     P   P     + +P     P  P
Sbjct: 369 GEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQP 428

Query: 168 PQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTP-ASPIAPRPSNSSPNSPPPPS 226
            Q P   P+   P            S   P  T         P A  P    P       
Sbjct: 429 AQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQP 488

Query: 227 TKRLSP 232
                P
Sbjct: 489 VVEPEP 494

Length = 1355

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 47.0 bits (111), Expect = 2e-05
 Identities = 37/163 (22%), Positives = 53/163 (32%), Gaps = 8/163 (4%)

Query: 53  PPPSPPASN-PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPP 111
           PP  P AS  PP +                S+ P     P           P P   + P
Sbjct: 510 PPEGPEASGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHKP 569

Query: 112 TRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNP 171
           ++ P   + +  P  P  P    P +   P  P        P+  + PK       P++P
Sbjct: 570 SKIP---TLSKKPEFPKDPKH--PKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSP 624

Query: 172 PPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRP 214
             P S   PK  PP      P    P   +   +P  P +P+P
Sbjct: 625 KRPESPKSPKRPPPPQRPSSPER--PEGPKIIKSPKPPKSPKP 665

Length = 943

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 3/83 (3%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
           A +P P A   ++P    S  P ++  P  +  P+ +    P      T+  P+P A   
Sbjct: 173 ATTPAPAAPVDTTPTN--SQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPAT 230

Query: 63  PTSSSP-PASSPPTSSPPPASNP 84
           P  ++P P      S+P    N 
Sbjct: 231 PDGAAPLPTDQAGVSTPAADPNA 253

Length = 331

>gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 35/198 (17%), Positives = 52/198 (26%), Gaps = 25/198 (12%)

Query: 45  VSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPP 104
                 +       + + P+SS   +         P SN   S    +P + S    +  
Sbjct: 379 SISVSGSDYSNPGSSIDTPSSSPSSSVIMTPPDSGPGSNVS-SRRVGTPGSKSDRVGAVL 437

Query: 105 P------PVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPP-PSSVE 157
                  P         P   S     S  SP S      PPP          P      
Sbjct: 438 LRRMNIKPTLASIPDEKPSNISVFED-SETSPNSSTLLRDPPPKKCGEESGHLPNNPFFN 496

Query: 158 PPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNS 217
             K +  S+PP +P     + P  + P + I+                  S      S S
Sbjct: 497 KLKLTLSSIPPLSPRQSIITLPTPSRPASRIS----------------SLSLRLGSYSGS 540

Query: 218 SPNSPPPPSTKRLSPPPG 235
             + PP P+        G
Sbjct: 541 IVSPPPYPTLVSRKGAAG 558

The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase. Length = 626

>gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 36/226 (15%), Positives = 57/226 (25%), Gaps = 15/226 (6%)

Query: 51  TSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNP 110
           +S P S     PP S      S      P + +    +         P   S P    + 
Sbjct: 398 SSSPSSSVIMTPPDSGPGSNVSSRRVGTPGSKSDRVGAVLLRRMNIKPTLASIPDEKPSN 457

Query: 111 PTRSPPP---PSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEP--PKRSPPS 165
            +        P+S+     PP        +   P+NP  N      SS+ P  P++S  +
Sbjct: 458 ISVFEDSETSPNSSTLLRDPPPKKC-GEESGHLPNNPFFNKLKLTLSSIPPLSPRQSIIT 516

Query: 166 VPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPA-------SPIAPRPSNSS 218
           +P  + P    SS          ++      P                 S I        
Sbjct: 517 LPTPSRPASRISSLSLRLGSYSGSIVSPPPYPTLVSRKGAAGLSFNRSVSDIEGERIGRY 576

Query: 219 PNSPP--PPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPSN 262
              P   P    +          S+  +P                N
Sbjct: 577 NLLPTRIPALPFKAESTTSSRRSSSLPSPTGVIGFPGSVPRFDHEN 622

The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase. Length = 626

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.2 bits (113), Expect = 2e-05
 Identities = 13/70 (18%), Positives = 21/70 (30%)

Query: 114 SPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPP 173
             P      PP    +P +   A +P  +        P  +    P  +  +  P  P  
Sbjct: 392 PSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPAA 451

Query: 174 PPSSSPPKNS 183
            P  +   NS
Sbjct: 452 APQPAVRLNS 461

Length = 598

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 16/87 (18%), Positives = 24/87 (27%), Gaps = 8/87 (9%)

Query: 78  PPP-------ASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSP 130
           P P          PP+       P         P   + P   +  P +  P       P
Sbjct: 378 PTPDEALRRLQEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVP 437

Query: 131 PSDPPANSPPPSNPPSNLPPPPPSSVE 157
                A + PP+   +  P    +S E
Sbjct: 438 -DAAAAAAAPPAPAAAPQPAVRLNSFE 463

Length = 598

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 7/88 (7%)

Query: 374 LLGEGGFGSVYKG-YLPDGREV----AIKQL-KIGGGQGEREFKAEVEIISRIHHRHLVS 427
           +LG G FG+VYKG ++P+G  V    AIK L +  G +   EF  E  I++ + H HLV 
Sbjct: 14  VLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVR 73

Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLH 455
           L+G C+S   + L+   +P+  L  ++H
Sbjct: 74  LLGVCLSPTIQ-LVTQLMPHGCLLDYVH 100

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 22/84 (26%), Positives = 49/84 (58%), Gaps = 6/84 (7%)

Query: 373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ---GEREFKA---EVEIISRIHHRHLV 426
            +LG+G +G+VY G    G+ +A+KQ+++        E+E++    EV+++  + H ++V
Sbjct: 6   EVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIV 65

Query: 427 SLVGYCISDDRRLLIYDYVPNNTL 450
             +G C+ D+   +  ++VP  ++
Sbjct: 66  QYLGTCLDDNTISIFMEFVPGGSI 89

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 373 NLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGE--REFKAEVEIISRIHHRHLVSLV 429
           N +G G FG VY    L  G  +A+K+++I     +  +E   E++++  + H +LV   
Sbjct: 6   NKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYY 65

Query: 430 GYCISDDRRLLIYDYVPNNTL 450
           G  +  ++  +  +Y    TL
Sbjct: 66  GVEVHREKVYIFMEYCSGGTL 86

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 8/88 (9%)

Query: 375 LGEGGFGSV-YKGYLPDG----REVAIKQLKIG-GGQGEREFKAEVEIISRIHHRHLVSL 428
           LGEG FG V    Y P+G     +VA+K LK   GG    + K E+EI+  ++H ++V  
Sbjct: 12  LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKY 71

Query: 429 VGYCISDDRR--LLIYDYVPNNTLYFHL 454
            G C  D      LI +++P+ +L  +L
Sbjct: 72  KGICTEDGGNGIKLIMEFLPSGSLKEYL 99

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 29/128 (22%), Positives = 34/128 (26%), Gaps = 9/128 (7%)

Query: 13  SSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASS 72
           S  PP   +  P               P P PV  P  T+ P          +   P   
Sbjct: 633 SGFPPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRV-------ARGDPVRP 685

Query: 73  PPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPS 132
               +   A   P    PP      PP    P      P  S    S T PP   P PP 
Sbjct: 686 TAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPP--EPEPPG 743

Query: 133 DPPANSPP 140
              A+   
Sbjct: 744 AEQADGAE 751

Length = 753

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 6/78 (7%)

Query: 373 NLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGERE---FKA--EVEIISRIHHRHLV 426
             LGEG +  VYK      GR VAIK++K+G  +  ++   F A  E++++  + H +++
Sbjct: 6   KKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNII 65

Query: 427 SLVGYCISDDRRLLIYDY 444
            L+          L++++
Sbjct: 66  GLLDVFGHKSNINLVFEF 83

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.1 bits (109), Expect = 3e-05
 Identities = 28/122 (22%), Positives = 39/122 (31%), Gaps = 4/122 (3%)

Query: 103 PPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPP-PSNPPSNLPPPPPSSVEPPKR 161
               V+  P  SP      P P   P P   P    P  P   P+ L  P P+S   P++
Sbjct: 376 NDGGVAPSPAGSPDVKKKAPEP-DLPQPDRHPGPAKPEAPGARPAEL--PSPASAPTPEQ 432

Query: 162 SPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNS 221
            PP       PP P +S P+N       V   +            +     + S+S    
Sbjct: 433 QPPVARSAPLPPSPQASAPRNVASGKPGVDLGSWQGKFMNFTRNGSRKQPVQASSSDAAQ 492

Query: 222 PP 223
             
Sbjct: 493 TG 494

Length = 620

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 31/126 (24%), Positives = 37/126 (29%), Gaps = 9/126 (7%)

Query: 20  VSNPPTISPPPPVSNPPKSSP----PPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPT 75
           V                + SP     PP  S  P       P A  PP  +  PA   P 
Sbjct: 68  VHRVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQ 127

Query: 76  SSPPPASNPPTSSP---PPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPN--SPPSP 130
               PA  P    P   P SP  +  P      P        P  P + P P   + P+P
Sbjct: 128 PVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAP 187

Query: 131 PSDPPA 136
             D P 
Sbjct: 188 VMDKPK 193

Length = 333

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 11/107 (10%)

Query: 132 SDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKN--------- 182
           SD  A +PP +  P+     PP +  P   S P+ P   P P       +          
Sbjct: 46  SDLAALAPPAAAAPA--AAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVA 103

Query: 183 SPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKR 229
              AP A        P  +     A+    R + ++P    P     
Sbjct: 104 RAAAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAA 150

Length = 484

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.0 bits (110), Expect = 3e-05
 Identities = 11/71 (15%), Positives = 19/71 (26%)

Query: 37  KSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPAS 96
           +  PP P            +P A     +    A++P    P  A      +   +    
Sbjct: 388 QEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPP 447

Query: 97  SPPTISPPPPV 107
           +P     P   
Sbjct: 448 APAAAPQPAVR 458

Length = 598

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 45.8 bits (108), Expect = 3e-05
 Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 6/83 (7%)

Query: 375 LGEGGFGSVYKG--YLP---DGREVAIKQLK-IGGGQGEREFKAEVEIISRIHHRHLVSL 428
           LGE  FG +YKG  YLP     + VAIK LK I   Q   EF+ E  +++ +HH ++V L
Sbjct: 13  LGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCL 72

Query: 429 VGYCISDDRRLLIYDYVPNNTLY 451
           +G    +    ++++Y+    L+
Sbjct: 73  LGVVTQEQPVCMLFEYLNQGDLH 95

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 2/84 (2%)

Query: 372 QNLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVG 430
           ++ LG G +G VY+G        VA+K LK    + E EF  E  ++  I H +LV L+G
Sbjct: 11  KHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVE-EFLKEAAVMKEIKHPNLVQLLG 69

Query: 431 YCISDDRRLLIYDYVPNNTLYFHL 454
            C  +    +I +++    L  +L
Sbjct: 70  VCTREPPFYIITEFMTYGNLLDYL 93

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 45.8 bits (108), Expect = 3e-05
 Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 5/84 (5%)

Query: 372 QNLLGEGGFGSVYKGYL-PDGREV--AIKQLKIGGGQGE-REFKAEVEIISRI-HHRHLV 426
           ++++GEG FG V +  +  DG ++  AIK LK    + + R+F  E+E++ ++ HH +++
Sbjct: 7   EDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNII 66

Query: 427 SLVGYCISDDRRLLIYDYVPNNTL 450
           +L+G C +     +  +Y P   L
Sbjct: 67  NLLGACENRGYLYIAIEYAPYGNL 90

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.2 bits (109), Expect = 3e-05
 Identities = 44/221 (19%), Positives = 64/221 (28%), Gaps = 10/221 (4%)

Query: 8   PPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSS 67
           P AA S      + N    SP    +    ++  P P         P +  A  P  ++S
Sbjct: 360 PLAAASCDANAVIENTELQSPSAQTAEKETAAKKPQPR--------PEAETAQTPVQTAS 411

Query: 68  PPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSP 127
             A      +  P SN   +  PP   A      +     ++  +      + TPP N  
Sbjct: 412 AAAMPSEGKTAGPVSNQENNDVPPWEDAPDEAQTAAGTAQTSAKSIQTASEAETPPENQV 471

Query: 128 PSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAP 187
               +       P S  PS  P     + E  +    +      P      P  + PP  
Sbjct: 472 SKNKAADNETDAPLSEVPSENPIQATPNDEAVETETFAHEAPAEPFYGYGFPDNDCPPED 531

Query: 188 IA--VPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPS 226
            A   PP      P  T    A   A        N+P  P 
Sbjct: 532 GAEIPPPDWEHAAPADTAGGGADEEAEAGGIGGNNTPSAPP 572

Length = 709

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 374 LLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVSLVGYC 432
           LLG+G FG V+KG L D   VA+K  K    Q  + +F +E  I+ +  H ++V L+G C
Sbjct: 2   LLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVC 61

Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGK 457
                  ++ + VP       L  K
Sbjct: 62  TQRQPIYIVMELVPGGDFLSFLRKK 86

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 16/80 (20%), Positives = 25/80 (31%)

Query: 4   PSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPP 63
           PS       ++S P   +  P  SPPP    P          +  P  +    P      
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 64  TSSSPPASSPPTSSPPPASN 83
            +   P      ++ PP+ N
Sbjct: 421 PTEPSPTPPANAANAPPSLN 440

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 23/80 (28%), Positives = 27/80 (33%), Gaps = 1/80 (1%)

Query: 8   PPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSS 67
           P A  S          PT +P P     P     P       T SPPP   AS P    +
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPP-AKASPPIPVPA 419

Query: 68  PPASSPPTSSPPPASNPPTS 87
            P    PT     A+ PP+ 
Sbjct: 420 EPTEPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 146 SNLPPPPPSSVEPPKRSPPSVPPQN---PPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQT 202
              P PP ++   P  + P+ PP     P PP + + P  + PAP   PP+   PP    
Sbjct: 379 RGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSA 438

Query: 203 PPTPASPIAPR 213
            P  A+    R
Sbjct: 439 DPAAAASAGDR 449

Length = 576

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 34/150 (22%), Positives = 46/150 (30%), Gaps = 11/150 (7%)

Query: 81  ASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSP-PSPPSDPPANSP 139
           A  P   SP   PP +  P   P P           P       N+P  SP ++PPA   
Sbjct: 45  AEFPWDPSPQAPPPVAQLPQ--PLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFA 102

Query: 140 PPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVP---PSNVP 196
            P+ P        P  + P +   P +  QNP   P   P +      +      P++  
Sbjct: 103 LPAGPAGPTIQTEPGQLYPVQV--PVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQ 160

Query: 197 PPPTQTPPTPASPIAPRPSNSSPNSPPPPS 226
            P  Q                 PN   PP 
Sbjct: 161 LPSQQQSAQKNDES---QLQQQPNGETPPQ 187

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 22/153 (14%), Positives = 33/153 (21%), Gaps = 8/153 (5%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSP-PPPPVSKPPTTSPPPSP---- 57
           +P   PP A    P P       +   P       ++P   P  + P T + P  P    
Sbjct: 52  SPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGPT 111

Query: 58  --PASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSP 115
                        P       +  P   P                 S   P      +  
Sbjct: 112 IQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQQSAQKN 171

Query: 116 PPPSSTPPPNSPPSPP-SDPPANSPPPSNPPSN 147
                   PN    P  +D   +    +     
Sbjct: 172 DESQLQQQPNGETPPQQTDGAGDDESEALVRLR 204

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 19/103 (18%), Positives = 29/103 (28%), Gaps = 16/103 (15%)

Query: 119 SSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSS 178
           S+T  P + P+P +           P     P             P+V PQ       S 
Sbjct: 167 STTTDPATTPAPAAPVDTTPTNSQTPAVATAP------------APAVDPQQNAVVAPSQ 214

Query: 179 PPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNS 221
              ++   P    P+     P    P P          + PN+
Sbjct: 215 ANVDTAATPAPAAPA----TPDGAAPLPTDQAGVSTPAADPNA 253

Length = 331

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 1/74 (1%)

Query: 40  PPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPP 99
           PP    +         + P      + +P   +    +PP A+ PP  +P   PP  +P 
Sbjct: 124 PPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPP-TPV 182

Query: 100 TISPPPPVSNPPTR 113
             + P     P +R
Sbjct: 183 ARADPRETRVPMSR 196

Length = 418

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 45.0 bits (106), Expect = 4e-05
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 5/86 (5%)

Query: 370 ADQNLLGEGGFGSVYKGYL--PDGRE--VAIKQLKIGGGQGER-EFKAEVEIISRIHHRH 424
             Q ++G G FG V++G L  P  +E  VAIK LK G  + +R +F +E  I+ +  H +
Sbjct: 8   TKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHN 67

Query: 425 LVSLVGYCISDDRRLLIYDYVPNNTL 450
           ++ L G        ++I +Y+ N  L
Sbjct: 68  IIRLEGVVTKFKPAMIITEYMENGAL 93

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.3 bits (108), Expect = 5e-05
 Identities = 18/79 (22%), Positives = 25/79 (31%)

Query: 82  SNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPP 141
            +   S    +   ++P     P P   P   S P         SPP   + PP   P  
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 142 SNPPSNLPPPPPSSVEPPK 160
              PS  PP   ++  P  
Sbjct: 421 PTEPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 29/135 (21%), Positives = 47/135 (34%), Gaps = 13/135 (9%)

Query: 144 PPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTP 203
               + P P  S +  K++P    PQ    P  + P            P++ P P  Q P
Sbjct: 376 NDGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPP 435

Query: 204 PTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENT-PGNGTNPSSPE----SSS 258
              ++P+ P P  S      P +       PG+ + S +        N S  +    SSS
Sbjct: 436 VARSAPLPPSPQAS-----APRNVASGK--PGVDLGSWQGKFMNFTRNGSRKQPVQASSS 488

Query: 259 SPSNNGIGTAGTVVI 273
             +  G+   G   +
Sbjct: 489 DAAQTGVF-EGVAEL 502

Length = 620

>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.9 bits (109), Expect = 5e-05
 Identities = 29/149 (19%), Positives = 39/149 (26%), Gaps = 6/149 (4%)

Query: 74  PTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSD 133
           P S  PPA     S P  SP AS         P     T    P ++    ++P  PP  
Sbjct: 648 PPSRAPPA---SLSKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGSAPAPPPVP 704

Query: 134 PPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPS 193
            P + PP    P         +         SV   +     +             V   
Sbjct: 705 DPYDRPPWEEAPEVASANDGPNNAAEGNLSESVEDASNSELQAVEQ---QATHQPQVQAE 761

Query: 194 NVPPPPTQTPPTPASPIAPRPSNSSPNSP 222
              P  T      +S +     N    S 
Sbjct: 762 AQSPASTTALTQTSSEVQDTELNLVLLSS 790

Length = 944

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 3/88 (3%)

Query: 67  SPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST---PP 123
           S P  +  T+ P     P          + +P   + P P  +P   +   PS       
Sbjct: 161 SVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTA 220

Query: 124 PNSPPSPPSDPPANSPPPSNPPSNLPPP 151
               P+ P+ P   +P P++      P 
Sbjct: 221 ATPAPAAPATPDGAAPLPTDQAGVSTPA 248

Length = 331

>gnl|CDD|221188 pfam11725, AvrE, Pathogenicity factor

 Score = 45.9 bits (109), Expect = 5e-05
 Identities = 31/188 (16%), Positives = 39/188 (20%), Gaps = 18/188 (9%)

Query: 7   GPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSS 66
              A       PP +  PT + P     P        P     T +P  SP A     S 
Sbjct: 60  KSSAPRQIQAAPPQALNPTAAAPQSSRGPTLRELLALPEDDGETQAPESSPSARRLTRSE 119

Query: 67  S-------PPASSPPTSSPP----PASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSP 115
                     A  P                 SS    PP S     S   P +   + + 
Sbjct: 120 GVARHEMEDLAGRPVVKPDADRQLRQDILNKSSSSRRPPVSKEEGTSSKMPATALASAAL 179

Query: 116 PPPSSTPPPNSP-------PSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPP 168
                               S  S    N P      +   P    S             
Sbjct: 180 FKDDEIRQEVDAARSDQASQSRLSRSRGNPPAIPPDAAPRQPMLTRSAGGRFEGEDENLE 239

Query: 169 QNPPPPPS 176
           +N  P   
Sbjct: 240 RNLQPQSP 247

This family is secreted by gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and the fire blight plant pathogen Erwinia amylovora, amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. this conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas. Length = 1771

>gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 34/212 (16%), Positives = 53/212 (25%), Gaps = 12/212 (5%)

Query: 1   MSAPSPGPPAANSSS--PPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPP 58
           M+ P  GP +  SS     P   +    +      N   +    P       +    S  
Sbjct: 407 MTPPDSGPGSNVSSRRVGTPGSKSDRVGAVLLRRMNIKPTLASIPDEKPSNISVFEDSET 466

Query: 59  ASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPP 118
           + N  T    P             N P  +      +S PP       ++ P    P   
Sbjct: 467 SPNSSTLLRDPPPKKCGEESGHLPNNPFFNKLKLTLSSIPPLSPRQSIITLPTPSRPASR 526

Query: 119 SSTPPPNSP-PSPPSDPPANSPPPSNPPSNLPPPPPSSVE--------PPKRSPPSVPPQ 169
            S+        S     P   P   +           SV              P  +P  
Sbjct: 527 ISSLSLRLGSYSGSIVSPPPYPTLVSRKGAAGLSFNRSVSDIEGERIGRYNLLPTRIPAL 586

Query: 170 NPPPPPSSSPPKN-SPPAPIAVPPSNVPPPPT 200
                 ++S  ++ S P+P  V       P  
Sbjct: 587 PFKAESTTSSRRSSSLPSPTGVIGFPGSVPRF 618

The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase. Length = 626

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.7 bits (109), Expect = 5e-05
 Identities = 12/71 (16%), Positives = 22/71 (30%)

Query: 68  PPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSP 127
           PP+       PP     P +    + P ++    +   P +          ++  PP   
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPA 450

Query: 128 PSPPSDPPANS 138
            +P      NS
Sbjct: 451 AAPQPAVRLNS 461

Length = 598

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 29/127 (22%), Positives = 37/127 (29%), Gaps = 10/127 (7%)

Query: 51  TSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNP 110
             PP    A   P  +    +  P    P     P  +  PS  A   P    P      
Sbjct: 634 GFPPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPV--RPTAHHAA 691

Query: 111 PTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQN 170
             R+P  P        P  PP       PPP  P +  P P  SS+     +PP   P  
Sbjct: 692 L-RAPQAP-------RPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPG 743

Query: 171 PPPPPSS 177
                 +
Sbjct: 744 AEQADGA 750

Length = 753

>gnl|CDD|223044 PHA03325, PHA03325, nuclear-egress-membrane-like protein; Provisional

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 5/116 (4%)

Query: 13  SSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASS 72
           S   P P S PP   P          +    P       +  P+ PA++  +  S  A +
Sbjct: 302 SDPEPLPASLPP--PPVRRPRVKHPEAGKEEPDGARNAEAKEPAQPATSTSSKGSSSAQN 359

Query: 73  PPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPP 128
             + S  P S+   +S          P +     + + P    P  +S P P S P
Sbjct: 360 KDSGSTGPGSSLAAASSFLEDDDFGSPPLDLTTSLRHMP---SPSVTSAPEPPSIP 412

Length = 418

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.4 bits (107), Expect = 5e-05
 Identities = 33/115 (28%), Positives = 44/115 (38%), Gaps = 2/115 (1%)

Query: 7   GPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPP--PPVSKPPTTSPPPSPPASNPPT 64
           G  A + S+   P S      P P    P  ++P     P S  P T  P + P+   P 
Sbjct: 377 GASAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPW 436

Query: 65  SSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPS 119
             +PPA       P PA   P +SP P  P S       PP + +P   +   PS
Sbjct: 437 DDAPPAPPRSGIPPRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAEHTPS 491

Length = 624

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.3 bits (108), Expect = 6e-05
 Identities = 17/77 (22%), Positives = 27/77 (35%)

Query: 27  SPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPT 86
           S          +   P P   P     P  P A     +++ P+  P  +SPP       
Sbjct: 362 SAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEP 421

Query: 87  SSPPPSPPASSPPTISP 103
           + P P+PPA++      
Sbjct: 422 TEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.3 bits (108), Expect = 6e-05
 Identities = 16/79 (20%), Positives = 22/79 (27%)

Query: 14  SSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSP 73
            S         +    P  +  P   P P   S P T     +P       S   P  + 
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 74  PTSSPPPASNPPTSSPPPS 92
           PT   P       ++PP  
Sbjct: 421 PTEPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 20/122 (16%), Positives = 33/122 (27%), Gaps = 14/122 (11%)

Query: 92  SPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPP 151
           +PPA++ P  + PPP + P   S P   + P     P    +                  
Sbjct: 52  APPAAAAPAAAQPPPAAAPAAVSRP---AAPAAEPAP-WLVEHAKRLTAQREQLVARAAA 107

Query: 152 PPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIA 211
           P +  E    + P+            +    + P          P  P       A  + 
Sbjct: 108 PAAP-EAQAPAAPAERAAAENAARRLARAAAAAPR---------PRVPADAAAAVADAVK 157

Query: 212 PR 213
            R
Sbjct: 158 AR 159

Length = 484

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 1/69 (1%)

Query: 44  PVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISP 103
           P         P     + PP +++PP   P   + P A+ P  +  PP+  A    +  P
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVP-PAAPARPAAARPAPAPAPPAAAAPPARSADP 440

Query: 104 PPPVSNPPT 112
               S    
Sbjct: 441 AAAASAGDR 449

Length = 576

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 44.9 bits (105), Expect = 6e-05
 Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 12/147 (8%)

Query: 59  ASNPPTSSSPPASSPPTSSPPPA--SNPPTSSPPPSPPASSPPT--ISPPPPVSNPPTRS 114
           A+ P    S  A++P  ++  PA  + PP  +      A++ P    +PP   + PP ++
Sbjct: 208 AAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKA 267

Query: 115 PPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPP 174
             PP+      +PP+  + PPA +   + PP+     P  +   P ++  +      PP 
Sbjct: 268 AAPPAKAA---APPAKAAAPPAKA---AAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPA 321

Query: 175 PSSSPPKN--SPPAPIAVPPSNVPPPP 199
            +++PP    +PPA  A PP+     P
Sbjct: 322 KAAAPPAKAATPPAKAAAPPAKAAAAP 348

Length = 357

>gnl|CDD|183558 PRK12495, PRK12495, hypothetical protein; Provisional

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 1/101 (0%)

Query: 48  PPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPV 107
              T+P  +   ++P   + P A +       P     ++S         P T +     
Sbjct: 82  AEATAPSDAGSQASPDDDAQPAAEAEAADQSAPPE-ASSTSATDEAATDPPATAAARDGP 140

Query: 108 SNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNL 148
           +  PT  P  P     P   P    +PP  S P ++    L
Sbjct: 141 TPDPTAQPATPDERRSPRQRPPVSGEPPTPSTPDAHVAGTL 181

Length = 226

>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family

 Score = 45.2 bits (107), Expect = 6e-05
 Identities = 25/132 (18%), Positives = 39/132 (29%), Gaps = 18/132 (13%)

Query: 140 PPSNPPSNLPPPPPSSVEPPKRSP------PSVP---PQNPPPPPSSSPPKNSPPAPIAV 190
           P         P   +  +PP             P   P+    P    P    P  P  +
Sbjct: 380 PRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPTPMGP--GGPLRPNGL 437

Query: 191 PPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVP-STENTPGNGT 249
                P    + P   A   A +P         PP+ + L     +P P ST +  G   
Sbjct: 438 A----PMNAVRAPSRNAQNAAQKP--PMQPVMYPPNYQSLPLSQDLPQPQSTASQGGQNK 491

Query: 250 NPSSPESSSSPS 261
             +   +S++P 
Sbjct: 492 KLAQVLASATPQ 503

These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562

>gnl|CDD|227430 COG5099, COG5099, RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 45/225 (20%), Positives = 67/225 (29%), Gaps = 13/225 (5%)

Query: 50  TTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSN 109
           T +   S P +N   SS        + SP        SS   +  A + P+ +PPP +S 
Sbjct: 172 TPASSSSQPLTNLVVSSIKRFPYLTSLSPFFNYLIDPSSDSATASADTSPSFNPPPNLSP 231

Query: 110 PPTRSPPPPSSTPPPNS-------PPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRS 162
               S    S  P   S         S   +   +         NL     + V     S
Sbjct: 232 NNLFSTSDLSPLPDTQSVENNIILNSSSSINELTSIYGSVPSIRNLRGLNSALVSFLNVS 291

Query: 163 PPSVPP---QNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSP 219
             S+           P+ SP   S      +P S+     T+   T  +P    PS  +P
Sbjct: 292 SSSLAFSALNGKEVSPTGSPSTRSFARV--LPKSSPNNLLTEILTTGVNPPQSLPSLLNP 349

Query: 220 NSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPSNNG 264
                 ST          +   +N   N  +  S    SS   + 
Sbjct: 350 VF-LSTSTGFSLTNLSGYLNPNKNLKKNTLSSLSNLGYSSNVPSP 393

Length = 777

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 45.3 bits (107), Expect = 7e-05
 Identities = 51/231 (22%), Positives = 75/231 (32%), Gaps = 44/231 (19%)

Query: 59  ASNPPTSSSPPASSPPTSSPPPASNPPTSSP----PPSPPASSPPTISPPPPVSNPPTRS 114
            S+P        + PP         P T+      PP P A++P   + PP        +
Sbjct: 244 ISHPLRGDIAAPAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALA 303

Query: 115 PPPPSSTPPPNSPPSPPSDPPANSP--------------PPSNPPSNLPP------PPPS 154
             P +   PP+ PP  P+                     P  + P   P        PPS
Sbjct: 304 GAPLALPAPPDPPPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPS 363

Query: 155 SVE-------PPKRSPPSVPPQNPPP---------PPSSSPPKNSPPAPIAVPPSNVPPP 198
           S+E        PKR+      +             P      + + P P +VP     P 
Sbjct: 364 SLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPV 423

Query: 199 PTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGT 249
           P   PP PA+P+ P     S + P PP  ++   PP        + P + T
Sbjct: 424 PASAPPPPATPL-PSAEPGSDDGPAPPPERQ---PPAPATEPAPDDPDDAT 470

Length = 3151

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.8 bits (106), Expect = 7e-05
 Identities = 20/80 (25%), Positives = 27/80 (33%), Gaps = 2/80 (2%)

Query: 164 PSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPP 223
           P   PQ   P  ++  P    PAP   P +          P   +   P P    P +PP
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETA-TPPPVPPRPVAPP 420

Query: 224 PPSTKRLSPP-PGIPVPSTE 242
            P T   +P      +P  E
Sbjct: 421 VPHTPESAPKLTRAAIPVDE 440

Length = 585

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 44.8 bits (106), Expect = 7e-05
 Identities = 31/161 (19%), Positives = 40/161 (24%), Gaps = 16/161 (9%)

Query: 1   MSAPSPGPPAANSSSPPPPVSNPPTISPPP-PVSNPPKSSPPPPPVSKPPTTSPPPSPPA 59
           +    P  PA      P                   P  +P   P S  P       P  
Sbjct: 139 LPTARPAYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYD 198

Query: 60  SNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPS 119
           +  P              P P  + P       P         PPP   +     P PP 
Sbjct: 199 AGRPEYDQR---RRDYDHPRPDWDRPRRDRTDRP--------EPPPGAGHVHRGGPGPPE 247

Query: 120 STPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPK 160
                +  P  P  P A  P  + P     P  P++   PK
Sbjct: 248 ----RDDAPVVPIRPSAPGPLAAQPAPAPGPGEPTARLNPK 284

Length = 617

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.8 bits (106), Expect = 7e-05
 Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 13/89 (14%)

Query: 118 PSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPP---P 174
           P++ P P++  +    P  +S           P  P S   P  +PP+V    P      
Sbjct: 386 PAAAPQPSAAAAASPSPSQSSAAA-------QPSAPQSATQPAGTPPTVSVDPPAAVPVN 438

Query: 175 PSSSPPKNSPPAPIAVPPSNVPPPPTQTP 203
           P S+ P+   PA           P ++  
Sbjct: 439 PPSTAPQAVRPAQFKEEK---KIPVSKVS 464

Length = 614

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 22/114 (19%), Positives = 32/114 (28%)

Query: 112 TRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNP 171
            R    P++     +    P          + P   +  PP + V P     P+ P   P
Sbjct: 69  HRVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQP 128

Query: 172 PPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPP 225
              P+  P    P      P     P P  + P PA          +   P P 
Sbjct: 129 VQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPV 182

Length = 333

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 45.0 bits (107), Expect = 7e-05
 Identities = 13/104 (12%), Positives = 27/104 (25%), Gaps = 5/104 (4%)

Query: 71  SSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSP 130
           + P  ++P  A  PP ++P      ++P    P P +     R               +P
Sbjct: 52  APPAAAAPAAAQPPPAAAPAAVSRPAAPAA-EPAPWLVEHAKRLTAQ--REQLVARAAAP 108

Query: 131 PSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPP 174
            +        P+   +         +     + P          
Sbjct: 109 AAPEAQAPAAPAERAA--AENAARRLARAAAAAPRPRVPADAAA 150

Length = 484

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 2/83 (2%)

Query: 81  ASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPP 140
            +  P ++P P+ P  + PT S  P V+  P   P          +P     D  A   P
Sbjct: 168 TTTDPATTPAPAAPVDTTPTNSQTPAVATAPA--PAVDPQQNAVVAPSQANVDTAATPAP 225

Query: 141 PSNPPSNLPPPPPSSVEPPKRSP 163
            +    +   P P+         
Sbjct: 226 AAPATPDGAAPLPTDQAGVSTPA 248

Length = 331

>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein

 Score = 45.2 bits (107), Expect = 7e-05
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 6/65 (9%)

Query: 391 GREVAIKQLKIGGGQGERE---FKAEVEIISRIHHRHLVSLV--GYCISDDRRLLIYDYV 445
           G EVAIK L+    + E +   F+ E  + +R++H ++V+L+  G          +++YV
Sbjct: 3   GHEVAIKLLRTDAPEEEHQRARFRRETALCARLYHPNIVALLDSGEA-PPGLLFAVFEYV 61

Query: 446 PNNTL 450
           P  TL
Sbjct: 62  PGRTL 66

This model represents proteins of 1350 in length, in multiple species of Burkholderia, in Acidovorax avenae subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1, and in multiple copies in Sorangium cellulosum, in genomic neighborhoods that include a cyclodehydratase/docking scaffold fusion protein (TIGR03882) and a member of the thiazole/oxazole modified metabolite (TOMM) precursor family TIGR03795. It has a kinase domain in the N-terminal 300 amino acids, followed by a cyclase homology domain, followed by regions without named domain definitions. It is a probable bacteriocin-like metabolite biosynthesis protein [Cellular processes, Toxin production and resistance]. Length = 1266

>gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane glycoprotein G

 Score = 44.7 bits (105), Expect = 7e-05
 Identities = 41/162 (25%), Positives = 56/162 (34%), Gaps = 9/162 (5%)

Query: 103 PPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRS 162
           P   V+   T S P   S P   S  +P S P       +     L    P   +    +
Sbjct: 168 PKTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQ--GTT 225

Query: 163 PPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPP-----PPTQTPPTPASPIAPRPSNS 217
             S P     PPPS   P  SP  P +    +          TQ   TP +    R  +S
Sbjct: 226 TSSNPEPQTEPPPSQRGPSGSPQHPPSTTSQDQSTTGDGQEHTQRRKTPPATSNRRSPHS 285

Query: 218 SPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSS 259
           +  + PPP+TKR       P P+     G+    SSP    +
Sbjct: 286 T--ATPPPTTKRQETGRPTPRPTATTQSGSSPPHSSPPGVQA 325

Length = 408

>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 21/134 (15%), Positives = 30/134 (22%), Gaps = 2/134 (1%)

Query: 29  PPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSS 88
            PP             +   P     P      P +  +     P  +  PP      SS
Sbjct: 55  YPPRETGSGGGVATSTIYTVPRPPRGPEQTLDKPDSLPASRELPPGPTPVPPGGFRGASS 114

Query: 89  PPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNL 148
           P     ++SP  +                 SS             P             +
Sbjct: 115 PRLGADSTSPRFLYQVNFPVILAPIGESNSSSEELSEEEEHSRPPPS--ESLKVKNGGKV 172

Query: 149 PPPPPSSVEPPKRS 162
            P   S  +  KRS
Sbjct: 173 YPKGFSKHKTHKRS 186

Length = 580

>gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566)

 Score = 44.5 bits (105), Expect = 7e-05
 Identities = 31/118 (26%), Positives = 40/118 (33%), Gaps = 6/118 (5%)

Query: 49  PTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPP----ASSPPTISPP 104
            +TS   S P S+     S    S   SS P   N P S P  SP     +SS   +S  
Sbjct: 8   GSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTSSSSSFGLSKQ 67

Query: 105 PPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRS 162
            P S    R      S P   SP +  S   + +   S   S+ P     +      S
Sbjct: 68  RPSSLSRGRLSSRFVS-PSRGSPSAAASLNGSLA-TASTSGSSSPSRSRRTTSSDLSS 123

Family of related proteins that is plant specific. Length = 313

>gnl|CDD|237015 PRK11901, PRK11901, hypothetical protein; Reviewed

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 31/166 (18%), Positives = 48/166 (28%), Gaps = 28/166 (16%)

Query: 7   GPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSP---PPPPVSKPPTTSPPPSPPASNP- 62
           G  + +S +   P +   T            + P     PP+S  PT + PP  P     
Sbjct: 83  GSSSLSSGNQSSPSAANNTSDGHDASGVKNTAPPQDISAPPISPTPTQAAPPQTPNGQQR 142

Query: 63  ---------------------PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTI 101
                                  ++    S+ PT    PA+  P+        A + PT 
Sbjct: 143 IELPGNISDALSQQQGQVNAASQNAQGNTSTLPT---APATVAPSKGAKVPATAETHPTP 199

Query: 102 SPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSN 147
              P    P        +   PP +   P S   +     S P S+
Sbjct: 200 PQKPATKKPAVNHHKTATVAVPPATSGKPKSGAASARALSSAPASH 245

Length = 327

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.0 bits (107), Expect = 8e-05
 Identities = 13/78 (16%), Positives = 21/78 (26%)

Query: 21  SNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPP 80
            +          +    +  P P     P     P    +    S  P  +SPP   P  
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 81  ASNPPTSSPPPSPPASSP 98
            + P  + P  +  A   
Sbjct: 421 PTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.7 bits (106), Expect = 8e-05
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 7/75 (9%)

Query: 55  PSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRS 114
           P+PP++     +    ++PP ++ PP      + P  + PA +P     PP  + PP RS
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAP----APPAAAAPPARS 437

Query: 115 PPPPSSTPPPNSPPS 129
             P       ++   
Sbjct: 438 ADP---AAAASAGDR 449

Length = 576

>gnl|CDD|183854 PRK13042, PRK13042, superantigen-like protein; Reviewed

 Score = 44.2 bits (104), Expect = 8e-05
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 10  AANSSSPPP-----PVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPT 64
           AAN+++P       P S PP+     P S P  ++PP   V  P  T    +P ++   T
Sbjct: 27  AANATTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAPQQTPNATTPSSTKVET 86

Query: 65  SSSPPASSPPTSSPP 79
             SP     PT   P
Sbjct: 87  PQSPTTKQVPTEINP 101

Length = 291

>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

 Score = 43.9 bits (103), Expect = 8e-05
 Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 7/84 (8%)

Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVS 427
           LGE  FG VYKG+L         + VAIK LK    G    EFK E  + SR+ H ++V 
Sbjct: 13  LGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVC 72

Query: 428 LVGYCISDDRRLLIYDYVPNNTLY 451
           L+G    +    +I+ Y  ++ L+
Sbjct: 73  LLGVVTKEQPLSMIFSYCSHSDLH 96

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror2 plays important roles in skeletal and heart formation. Ror2-deficient mice show widespread bone abnormalities, ventricular defects in the heart, and respiratory dysfunction. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Ror2 is also implicated in neural development. Length = 283

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 44.8 bits (105), Expect = 9e-05
 Identities = 43/222 (19%), Positives = 83/222 (37%), Gaps = 17/222 (7%)

Query: 48  PPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPV 107
           P  T+  P+ P+  P ++    +++ PTS  P  +   T     SP + +    +   P 
Sbjct: 443 PHKTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTSSTLPEDTSPTSRT----TSATPN 498

Query: 108 SNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVP 167
           +  PT +   P++T P     S   +  + +P      +    PP  +   P  + P V 
Sbjct: 499 ATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVPNATSPQVT 558

Query: 168 PQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPST 227
            ++P    ++    ++P    +   +      +   PT   P  P  S+S+P S    ++
Sbjct: 559 EESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSS--PTSQQPGIPSSSHSTPRS----NS 612

Query: 228 KRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPSNNGIGTAG 269
              +P      P+       G    + E+ S PS   + T  
Sbjct: 613 TSTTPLLTSAHPT-------GGENITEETPSVPSTTHVSTLS 647

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 44.7 bits (105), Expect = 9e-05
 Identities = 44/205 (21%), Positives = 57/205 (27%), Gaps = 24/205 (11%)

Query: 6   PGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTS 65
           PGP   +  S  P +S  P     P     PK    P    +P +   P  P +   P  
Sbjct: 561 PGPAKEHKPSKIPTLSKKPEF---PKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPEL 617

Query: 66  SSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPN 125
              P S     SP     PP    P SP     P I              PP S  PP +
Sbjct: 618 LDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKI---------IKSPKPPKSPKPPFD 668

Query: 126 ------------SPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPP 173
                          +   +         +  S L    P +   P  +P  +PP+ P  
Sbjct: 669 PKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKLPRD 728

Query: 174 PPSSSPPKNSPPAPIAVPPSNVPPP 198
                 P   P A          PP
Sbjct: 729 EEFPFEPIGDPDAEQPDDIEFFTPP 753

Length = 943

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 44.2 bits (105), Expect = 9e-05
 Identities = 24/99 (24%), Positives = 33/99 (33%), Gaps = 6/99 (6%)

Query: 88  SPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSN 147
           S P     ++ P  +P P      T   P  S TP   + P+P  DP  N+      PS 
Sbjct: 161 SVPLDTSTTTDPATTPAPAAPVDTT---PTNSQTPAVATAPAPAVDPQQNAVVA---PSQ 214

Query: 148 LPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPA 186
                 ++  P   + P      P      S P   P A
Sbjct: 215 ANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADPNA 253

Length = 331

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 17/72 (23%), Positives = 26/72 (36%)

Query: 6   PGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTS 65
           P    A +++     + P       P   PP +S P PP +  P    P + P   P   
Sbjct: 125 PAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVAR 184

Query: 66  SSPPASSPPTSS 77
           + P  +  P S 
Sbjct: 185 ADPRETRVPMSR 196

Length = 418

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.7 bits (105), Expect = 9e-05
 Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 10/131 (7%)

Query: 25  TISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNP 84
           ++ P    ++ P  S    P S    T P P           + PA+    SS  PA+  
Sbjct: 370 SLRPSGGGASAPSGSAAEGPASGGAATIPTPGTQG----PQGTAPAAGMTPSSAAPATPA 425

Query: 85  PTSSPPPSPP-ASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSN 143
           P+++P P  P   +PP    PP    PP  +P  P ++P P +P S  S   +++PP   
Sbjct: 426 PSAAPSPRVPWDDAPPA---PPRSGIPPRPAPRMPEASPVPGAPDSVAS--ASDAPPTLG 480

Query: 144 PPSNLPPPPPS 154
            PS+     PS
Sbjct: 481 DPSDTAEHTPS 491

Length = 624

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 21/99 (21%), Positives = 31/99 (31%)

Query: 1   MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS 60
            +     P A   ++P  P   P    P     +P    P     +  P+ +     P  
Sbjct: 683 PAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLP 742

Query: 61  NPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPP 99
             P     PA +P    PPPA  P  +     PP+    
Sbjct: 743 PEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSE 781

Length = 824

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 15/107 (14%)

Query: 166 VPPQNPPPP---------PSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSN 216
             P   PP           +++   + P        ++   PP+ +P  P+ P  P   +
Sbjct: 146 EDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPS 205

Query: 217 SSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPSNN 263
           S  +S  PP       P      +   +P + TNPS P   ++P   
Sbjct: 206 SPSDSSLPP------APSSFQSDTPPPSPESPTNPSPPPGPAAPPPP 246

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 54/221 (24%), Positives = 75/221 (33%), Gaps = 13/221 (5%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSP-PASN 61
            P P  P        PP S  PT     P S+ P SS     V+KP      PSP  ASN
Sbjct: 367 VPRPLSPYTAYEDLKPPTSPIPT-----PPSSSPASSKSVDAVAKPAEPDVVPSPGSASN 421

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
            P        +  T    P +      PP SP  ++P  +SP    ++     P     T
Sbjct: 422 VPEVEPAQVEAKKTRPLSPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVP----DT 477

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPK 181
            P  +     + PPAN  P S         PP+S  P        P          +   
Sbjct: 478 APATAATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGN--- 534

Query: 182 NSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSP 222
           ++PP  +A    +  P P    P         P++ +P+  
Sbjct: 535 SAPPTALADEQHHAQPKPRPLSPYTMYEDLKPPTSPTPSPV 575

Length = 576

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 2   SAPSPGPPAANSSSPP--PPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPA 59
           +A SP P  +++++ P  P  +  P  +PP    +PP + P  PP + P    P      
Sbjct: 396 AAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKE- 454

Query: 60  SNPPTSSSPPASSPPTSSP 78
                 S   +  P T  P
Sbjct: 455 EKKIPVSKVSSLGPSTLRP 473

Length = 614

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 5/79 (6%)

Query: 2   SAPSPGPPAANSSSP-PPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS 60
            A +P P AA ++SP P   S     S P   + P   +  PP VS  P  +  P  P S
Sbjct: 386 PAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQP---AGTPPTVSVDP-PAAVPVNPPS 441

Query: 61  NPPTSSSPPASSPPTSSPP 79
             P +  P         P 
Sbjct: 442 TAPQAVRPAQFKEEKKIPV 460

Length = 614

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 33/123 (26%), Positives = 47/123 (38%), Gaps = 11/123 (8%)

Query: 121 TPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPP 180
               N  P+   +  A  P P +       PP +S +P  R P   PP+   PP  +  P
Sbjct: 68  VHRVNHAPANAQEHEAARPSPQHQ----YQPPYASAQP--RQPVQQPPEAQVPPQHAPRP 121

Query: 181 KNSPPAPIAVPPSNVPPP-PTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVP 239
               P P+  P     P  P Q P +P    AP+P     +S P P+ +   P   +  P
Sbjct: 122 AQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPV----HSAPQPAQQAFQPAEPVAAP 177

Query: 240 STE 242
             E
Sbjct: 178 QPE 180

Length = 333

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 32/200 (16%), Positives = 41/200 (20%), Gaps = 22/200 (11%)

Query: 14  SSPPPPVSNPPTISPPPPVSNPP---KSSPPPPPVSKPPT--TSPPPSPPASNPPTSSSP 68
             P             PP        K    P    +          S P   P      
Sbjct: 126 EEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPN 185

Query: 69  PASSPPTSSPPPASNPPTSSPPPSPPASSP-------------PTISPPPPVSNPPTRSP 115
               PP       +        P  P  +               T SP     +  +   
Sbjct: 186 KKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSSEI 245

Query: 116 PPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPP 175
              SS+      PSP    P                P +S+ PP   P S  P  P    
Sbjct: 246 SRRSSSSLKKPDPSPSMASPETRESSKRTE----TRPRTSLRPPSARPASARPAPPRVKR 301

Query: 176 SSSPPKNSPPAPIAVPPSNV 195
                       +    SNV
Sbjct: 302 KEIVTVLQDAQGVGKIVSNV 321

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPT--ISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPA 59
            + + G P   + + PPP + PP    +P  P +  P  +P PP  + PP  S  P+  A
Sbjct: 385 PSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAAA 444

Query: 60  SNPPT 64
           S    
Sbjct: 445 SAGDR 449

Length = 576

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 104 PPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSP 163
           P P S       P   + PPP + P  P  P A + P +  P+  P PP ++  P + + 
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVP--PAAPARPAAARPAPAPAPPAAAAPPARSAD 439

Query: 164 PSVPPQNPP 172
           P+       
Sbjct: 440 PAAAASAGD 448

Length = 576

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 24/103 (23%), Positives = 31/103 (30%), Gaps = 10/103 (9%)

Query: 9   PAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSP 68
           P   S++  P      T +P  PV   P +S  P       T   P   P  N   + S 
Sbjct: 163 PLDTSTTTDPA----TTPAPAAPVDTTPTNSQTPAV----ATAPAPAVDPQQNAVVAPSQ 214

Query: 69  PASSPPTSSPPPASNPPTSSP--PPSPPASSPPTISPPPPVSN 109
                  +  P A   P  +   P      S P   P   V N
Sbjct: 215 ANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADPNALVMN 257

Length = 331

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 3/76 (3%)

Query: 74  PTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSD 133
           P S       PP     P  PA++    +       P    P    +  P  +  +    
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAA---PAAGGPAAALAAVPDAAAAAAAPP 447

Query: 134 PPANSPPPSNPPSNLP 149
            PA +P P+   ++  
Sbjct: 448 APAAAPQPAVRLNSFE 463

Length = 598

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 24/121 (19%), Positives = 28/121 (23%), Gaps = 2/121 (1%)

Query: 87  SSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPS 146
             PP    A   P  +       P    P P         P       P           
Sbjct: 634 GFPPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPTAHHAALR 693

Query: 147 NLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTP 206
              P  P    PP       PP + P     +P  +S  A    PP   PP   Q     
Sbjct: 694 --APQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPGAEQADGAE 751

Query: 207 A 207
            
Sbjct: 752 N 752

Length = 753

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 14/64 (21%), Positives = 22/64 (34%)

Query: 28  PPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTS 87
           P    +    +        KP   +P P PPA++ PT  +      P  +  P   P   
Sbjct: 125 PAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVAR 184

Query: 88  SPPP 91
           + P 
Sbjct: 185 ADPR 188

Length = 418

>gnl|CDD|223044 PHA03325, PHA03325, nuclear-egress-membrane-like protein; Provisional

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 30/161 (18%), Positives = 49/161 (30%), Gaps = 1/161 (0%)

Query: 44  PVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISP 103
             +    +S P S P      + +  A++  T+          S P P P AS PP    
Sbjct: 259 SSAFMLNSSLPTSAPKRRSRRAGAMRAAAGETADLADDDGSEHSDPEPLP-ASLPPPPVR 317

Query: 104 PPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSP 163
            P V +P      P  +       P+ P+   ++    S    +     P S      S 
Sbjct: 318 RPRVKHPEAGKEEPDGARNAEAKEPAQPATSTSSKGSSSAQNKDSGSTGPGSSLAAASSF 377

Query: 164 PSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPP 204
                   PP   ++  ++ P   +   P     P T    
Sbjct: 378 LEDDDFGSPPLDLTTSLRHMPSPSVTSAPEPPSIPLTYLSD 418

Length = 418

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 5/83 (6%)

Query: 373 NLLGEGGFGSVYKGYLP-DGREV--AIKQLKIGGGQGE-REFKAEVEIISRI-HHRHLVS 427
           +++GEG FG V K  +  DG  +  AIK++K    + + R+F  E+E++ ++ HH ++++
Sbjct: 1   DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIIN 60

Query: 428 LVGYCISDDRRLLIYDYVPNNTL 450
           L+G C       L  +Y P+  L
Sbjct: 61  LLGACEHRGYLYLAIEYAPHGNL 83

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 2/120 (1%)

Query: 72  SPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPP 131
           + P ++  P+S    SS      A+ P     P  V+     +    +            
Sbjct: 298 TVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSD 357

Query: 132 SDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPS--SSPPKNSPPAPIA 189
              P     P+  P N+ P P S+ E  + S  ++      P  S  ++P  N P +P +
Sbjct: 358 VTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPVSPTS 417

Length = 421

>gnl|CDD|139494 PRK13335, PRK13335, superantigen-like protein; Reviewed

 Score = 44.0 bits (103), Expect = 1e-04
 Identities = 16/82 (19%), Positives = 29/82 (35%)

Query: 49  PTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVS 108
           P     P+        S     S P        +   T +P      ++  + +P   V+
Sbjct: 74  PKLEKAPNTNEEKTSASKIEKISQPKQEEQKSLNISATPAPKQEQSQTTTESTTPKTKVT 133

Query: 109 NPPTRSPPPPSSTPPPNSPPSP 130
            PP+ + P P  +   ++P SP
Sbjct: 134 TPPSTNTPQPMQSTKSDTPQSP 155

Length = 356

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 19/81 (23%), Positives = 43/81 (53%), Gaps = 11/81 (13%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGERE-----FKAEVEIISRIHHRHLVSL 428
           +GEG +G VYK      G  VA+K++++   + E+E        E++++ ++ H ++V L
Sbjct: 7   IGEGTYGQVYKARNKKTGELVALKKIRM---ENEKEGFPITAIREIKLLQKLRHPNIVRL 63

Query: 429 VGYCISDDRR--LLIYDYVPN 447
                S  +    ++++Y+ +
Sbjct: 64  KEIVTSKGKGSIYMVFEYMDH 84

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 1/93 (1%)

Query: 90  PPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLP 149
           PP+PP  +P    P    S+   R    P  T  P +  +P   P   +P          
Sbjct: 173 PPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQP-TVQNPAQQPTVQNPAQQPQQQPQQ 231

Query: 150 PPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKN 182
            P   + +P  ++P   PPQ       S    N
Sbjct: 232 QPVQPAQQPTPQNPAQQPPQTEQGHKRSREQGN 264

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 57/265 (21%), Positives = 86/265 (32%), Gaps = 39/265 (14%)

Query: 36  PKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASN--------PPTS 87
            +  P        P+++P P+  +S   +SSS   SS  + S   +S+        P T+
Sbjct: 374 TEKPPSRNTPPSAPSSNPEPAASSSGSSSSSSGSESSSGSDSESESSSSDSEENEPPRTA 433

Query: 88  SPPPSPPAS------------SPPTISPPPPVSNPP---------------TRSPPPPSS 120
           SP P PP++            +P  +SP   VS+ P                    P S 
Sbjct: 434 SPEPEPPSTNKWQLDNWLNKVNPHKVSPAESVSSNPPIKQPMEKEGKVKSSGSQYHPESK 493

Query: 121 TPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPS---- 176
            PPP S       P      P +       P  S   P +R+     P+ P    +    
Sbjct: 494 EPPPKSSSKEKRRPRTAQKGPESGRGKQKSPAQSEAPPQRRTVGKKQPKKPEKASAGDER 553

Query: 177 SSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGI 236
           +     S P  +    S   PP      T  S           + PP    ++   P  I
Sbjct: 554 TGLRPESEPGTLPYGSSVQTPPDRPKAATKGSRKPSPRKEPKSSVPPAAEKRKYKSPSKI 613

Query: 237 PVPSTENTPGNGTNPSSPESSSSPS 261
              S E    + ++  SPE  S P 
Sbjct: 614 VPKSREFIETDSSSSDSPEDESLPP 638

This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental retardation syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental retardation. The family also contains a Drosophila AF4 protein homologue Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila. Length = 1154

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 77  SPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPA 136
           S P       + P  +P  +S PT +P PP S     S  P S+    +      +    
Sbjct: 75  SKPKTGTGKVAPPAATP--TSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAP 132

Query: 137 NSPPPSNPPS 146
            SP  S P S
Sbjct: 133 ESPSTSVPSS 142

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 23/119 (19%), Positives = 45/119 (37%)

Query: 143 NPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQT 202
                   P  ++      +P + P      P +++ P  +     A  P+  P PP+  
Sbjct: 386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPA 445

Query: 203 PPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPS 261
              PA      P  ++P++ P P+      P   P P+    P     P++P + ++P+
Sbjct: 446 GNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPA 504

Length = 824

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 24/91 (26%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 175 PSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPP 234
            S+S    +PP P   PP   P PP   P   A P  P         PPPP+  + S   
Sbjct: 515 GSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTP--------PPPPPTATQASSNA 566

Query: 235 GIPVPSTENTPGNGTNPSSPESSSSPSNNGI 265
              +P+  + P       +P  +   S   I
Sbjct: 567 PAQIPADSSPPPPIPEEPTPSPTKDSSPEEI 597

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 18/79 (22%), Positives = 22/79 (27%)

Query: 172 PPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLS 231
           P    S     S PA     P+  PPP    P  P +  A    +  P    PP      
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 232 PPPGIPVPSTENTPGNGTN 250
           P    P P         + 
Sbjct: 421 PTEPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 48/171 (28%), Positives = 60/171 (35%), Gaps = 11/171 (6%)

Query: 15  SPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPP 74
             P P    P+  PPPP   P  S P   P S  P                + PP  +  
Sbjct: 369 QGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQS 428

Query: 75  TSSPPPASNPPTSSPPPSPPASSPPT---------ISPPPPVSNPPTRSPPPPSSTPPPN 125
            S PP AS  P S     PP S                PPP     T + PP +S+    
Sbjct: 429 QSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAIGPPPSLPTSTPAAPPRASSGSQP 488

Query: 126 SPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPS 176
              + PS      P P  PP  +   P    E P+  PP  PP++P P P+
Sbjct: 489 PGSALPSSGGCAGPGPPLPPIQIKEEPLDEAEEPESPPP--PPRSPSPEPT 537

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 40/199 (20%), Positives = 56/199 (28%), Gaps = 15/199 (7%)

Query: 68  PPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSP------PPPSST 121
           P  +  P + P   +   T++         P T +PP    + P   P       P   T
Sbjct: 309 PLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQT 368

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLP-----PPPPSSVEPPKRSPPSVPPQNPPPPPS 176
             P   P+P   P  +         N P      P      P    P   P   P P   
Sbjct: 369 GEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQP 428

Query: 177 SSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGI 236
           +  P  +P     V  +       Q+   P S      +   P +  P       P P  
Sbjct: 429 AQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPL---YQQPQPVE 485

Query: 237 PVPSTENTPG-NGTNPSSP 254
             P  E  P    T P+ P
Sbjct: 486 QQPVVEPEPVVEETKPARP 504

Length = 1355

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 9/73 (12%)

Query: 115 PPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPP 174
           PP  +   P  + P+ P  PPA +PP         P  P++  P   +P   PP    PP
Sbjct: 384 PPSAAWGAPTPAAPAAP--PPAAAPPVPPAA----PARPAAARP---APAPAPPAAAAPP 434

Query: 175 PSSSPPKNSPPAP 187
             S+ P  +  A 
Sbjct: 435 ARSADPAAAASAG 447

Length = 576

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 172 PPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLS 231
           P PPS++    +P AP A PP+  PP P   P  PA P A RP+ +           R +
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVP---PAAPARPAAARPAPAPAPPAAAAPPARSA 438

Query: 232 PP 233
            P
Sbjct: 439 DP 440

Length = 576

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 41/220 (18%), Positives = 53/220 (24%), Gaps = 8/220 (3%)

Query: 5   SPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPT 64
           S   P    S   P + + P     P     PK  PPP   S P     P    +  PP 
Sbjct: 602 SAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPK 661

Query: 65  SSSPPAS--------SPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPP 116
           S  PP               +   +    T+        S      P  P +   T  P 
Sbjct: 662 SPKPPFDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPL 721

Query: 117 PPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPS 176
           PP        P  P  DP A  P      +          E P  +P             
Sbjct: 722 PPKLPRDEEFPFEPIGDPDAEQPDDIEFFTPPEEERTFFHETPADTPLPDILAEEFKEED 781

Query: 177 SSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSN 216
                  P   +  P S            P+ P      +
Sbjct: 782 IHAETGEPDEAMKRPDSPSEHEDKPPGDHPSLPKKRHRLD 821

Length = 943

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 23/107 (21%), Positives = 36/107 (33%), Gaps = 8/107 (7%)

Query: 124 PNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNS 183
            NS  S P D    + P + P    P  P  +     ++P       P   P  +     
Sbjct: 156 QNSGQSVPLDTSTTTDPATTPA---PAAPVDTTPTNSQTPAVATAPAPAVDPQQNAV--V 210

Query: 184 PPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRL 230
            P+   V  +  P P     P  A+P+   P++ +  S P      L
Sbjct: 211 APSQANVDTAATPAPAAPATPDGAAPL---PTDQAGVSTPAADPNAL 254

Length = 331

>gnl|CDD|221188 pfam11725, AvrE, Pathogenicity factor

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 28/176 (15%), Positives = 40/176 (22%), Gaps = 6/176 (3%)

Query: 5   SPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPT 64
                   SS+P    + PP    P   +      P    +   P        P S+P  
Sbjct: 53  KMPKVFQKSSAPRQIQAAPPQALNPTAAAPQSSRGPTLRELLALPEDDGETQAPESSPSA 112

Query: 65  SSSPPASSPPTSSPPPASNPPTSSPPPSP--PASSPPTISPP--PPVSNPPTRSPPPPSS 120
                +           +  P   P              S    PPVS     S   P++
Sbjct: 113 RRLTRSEGVARHEMEDLAGRPVVKPDADRQLRQDILNKSSSSRRPPVSKEEGTSSKMPAT 172

Query: 121 TPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPS 176
                +      D        +            S   P   PP   P+ P    S
Sbjct: 173 ALASAALFKD--DEIRQEVDAARSDQASQSRLSRSRGNPPAIPPDAAPRQPMLTRS 226

This family is secreted by gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and the fire blight plant pathogen Erwinia amylovora, amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. this conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas. Length = 1771

>gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 33/188 (17%), Positives = 46/188 (24%), Gaps = 16/188 (8%)

Query: 71  SSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSN-PPTRSPPPPSSTPPPNSP-- 127
           S   + S          +P  SP +S   T     P SN    R   P S +    +   
Sbjct: 379 SISVSGSDYSNPGSSIDTPSSSPSSSVIMTPPDSGPGSNVSSRRVGTPGSKSDRVGAVLL 438

Query: 128 ------PSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPK 181
                 P+  S P       S    +   P  S      R PP            ++P  
Sbjct: 439 RRMNIKPTLASIPDEKPSNISVFEDSETSPNSS---TLLRDPPPKKCGEESGHLPNNPFF 495

Query: 182 NSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPST 241
           N          S++PP   +         +   S  S  S    S       P       
Sbjct: 496 NKLKLT----LSSIPPLSPRQSIITLPTPSRPASRISSLSLRLGSYSGSIVSPPPYPTLV 551

Query: 242 ENTPGNGT 249
                 G 
Sbjct: 552 SRKGAAGL 559

The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase. Length = 626

>gnl|CDD|183558 PRK12495, PRK12495, hypothetical protein; Provisional

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 4/95 (4%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
            A S   P  ++       +   +  P    ++    +   PP +      P P P A  
Sbjct: 89  DAGSQASPDDDAQPAAEAEAADQSAPPEASSTSATDEAATDPPATAAARDGPTPDPTAQ- 147

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPAS 96
               ++P     P   PP +  PPT S P +  A 
Sbjct: 148 ---PATPDERRSPRQRPPVSGEPPTPSTPDAHVAG 179

Length = 226

>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 38/207 (18%), Positives = 51/207 (24%), Gaps = 18/207 (8%)

Query: 16  PPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSP--PPSPPASNP-PTSSSPPASS 72
            PP  +          +   P+    P      P + P     PP   P P      ASS
Sbjct: 55  YPPRETGSGGGVATSTIYTVPRPPRGPEQTLDKPDSLPASRELPPGPTPVPPGGFRGASS 114

Query: 73  PPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPS 132
           P   +   +         P   A    + S    +S          S  PP  S      
Sbjct: 115 PRLGADSTSPRFLYQVNFPVILAPIGESNSSSEELS-----EEEEHSRPPPSESLKVKNG 169

Query: 133 ---DPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPS-------SSPPKN 182
               P   S   ++  S        +    K S    P Q      S           + 
Sbjct: 170 GKVYPKGFSKHKTHKRSEFSGLTKKAARKRKGSFVFKPSQLKELSGSLKNLLHLDDSAET 229

Query: 183 SPPAPIAVPPSNVPPPPTQTPPTPASP 209
            P       P +V  PP  T   P  P
Sbjct: 230 DPATRQVPVPVHVLYPPLLTEYVPYKP 256

Length = 580

>gnl|CDD|237015 PRK11901, PRK11901, hypothetical protein; Reviewed

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 42/191 (21%), Positives = 58/191 (30%), Gaps = 21/191 (10%)

Query: 44  PVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISP 103
           P       S   +    N   S S   SS   SSP  A+N            ++PP    
Sbjct: 61  PTEHESQQSSNNAGAEKNIDLSGSSSLSSGNQSSPSAANNTSDGHDASGVKNTAPPQDIS 120

Query: 104 PPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPP-----------ANSPPPSNPPSNLPPPP 152
            PP+S  PT++ PP   TP        P +             A S       S LP  P
Sbjct: 121 APPISPTPTQAAPPQ--TPNGQQRIELPGNISDALSQQQGQVNAASQNAQGNTSTLPTAP 178

Query: 153 PSSVEPPKRSPPSV---PPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASP 209
            +         P+     P  P  P +  P  N          +   PP T   P   + 
Sbjct: 179 ATVAPSKGAKVPATAETHPTPPQKPATKKPAVNHHKT-----ATVAVPPATSGKPKSGAA 233

Query: 210 IAPRPSNSSPN 220
            A   S++  +
Sbjct: 234 SARALSSAPAS 244

Length = 327

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 20/82 (24%), Positives = 27/82 (32%), Gaps = 4/82 (4%)

Query: 127 PPSPPSDPPANSPPPSNPPSN----LPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKN 182
           PP+PP + PA   P +   S+       P P+     +        QNP   P   P + 
Sbjct: 173 PPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQ 232

Query: 183 SPPAPIAVPPSNVPPPPTQTPP 204
                    P N    P QT  
Sbjct: 233 PVQPAQQPTPQNPAQQPPQTEQ 254

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 12/93 (12%)

Query: 374 LLGEGGFGSVYKGYL--PDGR--EVAIKQLKIGG-GQGE-REFKAEVEIISRIHHRHLVS 427
           +LGEG FGSV +G L   DG   +VA+K +K+      E  EF +E   +    H +++ 
Sbjct: 6   ILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMK 65

Query: 428 LVGYCISDDRR------LLIYDYVPNNTLYFHL 454
           L+G C            ++I  ++ +  L+  L
Sbjct: 66  LIGVCFEASSLQKIPKPMVILPFMKHGDLHSFL 98

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|225987 COG3456, COG3456, Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 33/127 (25%), Positives = 44/127 (34%), Gaps = 8/127 (6%)

Query: 18  PPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPP---PSPPASN-PPTSSSPPASSP 73
           P  S+P T SP   VS+          +   P   P    P   A   P   S+ P S+ 
Sbjct: 109 PDESDPDTGSPQSAVSSTDMDDDFLADIEPEPRLPPGLTDPLQLADPVPNGFSADPLSAL 168

Query: 74  PTSS----PPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPS 129
            + S    P PA   P+ S     P S P +              PP  +S P P   P+
Sbjct: 169 QSESLIAQPDPAGGAPSISRNSEAPLSDPASAGGIDTPFPDDLDVPPIAASPPGPQEGPT 228

Query: 130 PPSDPPA 136
             +  PA
Sbjct: 229 ISASQPA 235

Length = 430

>gnl|CDD|225987 COG3456, COG3456, Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 26/120 (21%), Positives = 38/120 (31%), Gaps = 3/120 (2%)

Query: 54  PPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTR 113
            P    S+        A   P    PP    P     P P   S   +S     S     
Sbjct: 118 SPQSAVSSTDMDDDFLADIEPEPRLPPGLTDPLQLADPVPNGFSADPLSALQ--SESLIA 175

Query: 114 SPPPPSSTPPPNSP-PSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPP 172
            P P    P  +    +P SDP +     +  P +L  PP ++  P  +  P++    P 
Sbjct: 176 QPDPAGGAPSISRNSEAPLSDPASAGGIDTPFPDDLDVPPIAASPPGPQEGPTISASQPA 235

Length = 430

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V+ G      +VA+K LK G    E  F  E +I+ ++ H  LV L   C  
Sbjct: 14  LGAGQFGEVWMGTWNGTTKVAVKTLKPGTMSPE-AFLQEAQIMKKLRHDKLVQLYAVCSE 72

Query: 435 DDRRLLIYDYVPNNTL 450
           ++   ++ +Y+   +L
Sbjct: 73  EEPIYIVTEYMSKGSL 88

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 374 LLGEGGFGSVYKG-YLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYC 432
            LGEG +GSVYK  +   G+ VAIK + +      +E   E+ I+ +    ++V   G  
Sbjct: 10  KLGEGSYGSVYKAIHKETGQVVAIKVVPVEEDL--QEIIKEISILKQCDSPYIVKYYGSY 67

Query: 433 ISDDRRLLIYDY 444
             +    ++ +Y
Sbjct: 68  FKNTDLWIVMEY 79

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 30/206 (14%), Positives = 50/206 (24%), Gaps = 26/206 (12%)

Query: 30  PPVSNP---PKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPT 86
            P++NP    ++    PPV+   + +  P+     P +       SP            T
Sbjct: 128 GPITNPNVKRRTGVGLPPVAPAASPALKPTANGKRPSSKPPKSIMSPEVKVKSAKKTQDT 187

Query: 87  SSPPPSPPASSPPTISPPPPVSNPPTRSPPPPS-----STPPPNSPPSPPSDPPANSPPP 141
           S    +       ++       NPP +S    S     +        +  S     S   
Sbjct: 188 SKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTVKEESEEE 247

Query: 142 SNP-PSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAP------------- 187
           S      L           +      P  +     S    +                   
Sbjct: 248 SGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDE 307

Query: 188 ----IAVPPSNVPPPPTQTPPTPASP 209
                 VP S V    ++ P  P  P
Sbjct: 308 DEEMEIVPESPVEEEESEEPEPPPLP 333

This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterized by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. Length = 427

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 22/40 (55%), Positives = 23/40 (57%), Gaps = 6/40 (15%)

Query: 144 PPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNS 183
           PP N PPPPP    PP   PPS PP  PPPPP  +  K S
Sbjct: 5   PPGNPPPPPP----PPGFEPPSQPP--PPPPPGVNVKKRS 38

Length = 2365

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 7/86 (8%)

Query: 4  PSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPP 63
           S   P + S S     S+  + S PP       SS  P P  + P+ S     P+  P 
Sbjct: 1  SSSSNPTSRSQSHASSSSSSSSQSSPP-------SSTSPRPRRRKPSASSLLHTPSILPL 53

Query: 64 TSSSPPASSPPTSSPPPASNPPTSSP 89
             S P+    T  P   +  P  +P
Sbjct: 54 PKLSSPSPPSVTLPPAATTQTPQLNP 79

Length = 590

>gnl|CDD|220401 pfam09786, CytochromB561_N, Cytochrome B561, N terminal

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 26/107 (24%), Positives = 39/107 (36%), Gaps = 1/107 (0%)

Query: 75  TSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDP 134
            +    A   P +S   +P  +S P +      S+ P+RS   PS    P+S        
Sbjct: 110 FTVVSQAKKSPPASKTSTPMNTSEPLVPGHSSFSDSPSRS-ASPSRKFSPSSTIQQSPQL 168

Query: 135 PANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPK 181
             ++ P S   S   P   SS+ P   S      ++ P    SS  K
Sbjct: 169 TPSNKPASPSSSYQSPSYSSSLGPVNSSGNRSNLRSSPWALRSSGDK 215

Members of this family are found in the N terminal region of cytochrome B561, as well as in various other putative uncharacterized proteins. Length = 559

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 34/159 (21%), Positives = 47/159 (29%), Gaps = 6/159 (3%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
            A S  P  A ++   P        +         K             +S P  PP + 
Sbjct: 783 GAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPARPPGAA 842

Query: 62  ---PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPP 118
              PP  SS  + S P ++   A        P  P   + P  + PP  +     +  P 
Sbjct: 843 ARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAPA 902

Query: 119 SSTPPPNSP---PSPPSDPPANSPPPSNPPSNLPPPPPS 154
               P       P PP  P         PP +L  P PS
Sbjct: 903 PRPRPAPRVKLGPMPPGGPDPRGGFRRVPPGDLHTPAPS 941

Length = 1352

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 7/100 (7%)

Query: 161 RSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPN 220
           +   +     P    + + P+ + PA   V  +   P P   P   AS  A  P      
Sbjct: 365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPP------ 418

Query: 221 SPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSP 260
               P     +P    P  +    P       +P + ++P
Sbjct: 419 -AAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAP 457

Length = 618

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 43.3 bits (103), Expect = 3e-04
 Identities = 12/80 (15%), Positives = 23/80 (28%)

Query: 174 PPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPP 233
           P S++ P  +  A  A   +    P  + P  PA       + ++P  P   +    +P 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 234 PGIPVPSTENTPGNGTNPSS 253
                 +             
Sbjct: 98  APPAAAAAAAPAAAAVEDEV 117

Length = 1228

>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 28/168 (16%), Positives = 44/168 (26%), Gaps = 12/168 (7%)

Query: 1   MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS 60
           + A SP       SS       PP+ +PP  +S P  S       +              
Sbjct: 626 LDALSPKEGDGKKSSADRKPKTPPSRAPPASLSKPASSPDASQTSASFDLDPDFELATHQ 685

Query: 61  NPPTSSSPPASSP---PTSSP---PPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRS 114
           + P ++    S+P   P   P   PP    P  +     P ++              +  
Sbjct: 686 SVPEAALASGSAPAPPPVPDPYDRPPWEEAPEVASANDGPNNAAEGNLSESVEDASNSEL 745

Query: 115 PP-PPSSTPPPNSPPSPPSD-----PPANSPPPSNPPSNLPPPPPSSV 156
                 +T  P       S          S    +   NL      S+
Sbjct: 746 QAVEQQATHQPQVQAEAQSPASTTALTQTSSEVQDTELNLVLLSSGSI 793

Length = 944

>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 36/219 (16%), Positives = 55/219 (25%), Gaps = 35/219 (15%)

Query: 50  TTSPPPSPPASNPPTSSSPPASSPPTSSPPP----------------------ASNPPTS 87
                    A   P+S S    S  T++                         A +P   
Sbjct: 575 ANVQSAQSAAEAQPSSQSLSPISAVTTAAASLADDDILDAVLAARDSLLSDLDALSPKEG 634

Query: 88  SPPPSPPA---SSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNP 144
               S       +PP+ +PP  +S P +      +S      P    +     S P +  
Sbjct: 635 DGKKSSADRKPKTPPSRAPPASLSKPASSPDASQTSASFDLDPDFELA--THQSVPEAAL 692

Query: 145 PSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPP 204
            S   P PP   +P  R     PP    P  +S+    +  A   +  S           
Sbjct: 693 ASGSAPAPPPVPDPYDR-----PPWEEAPEVASANDGPNNAAEGNLSESV---EDASNSE 744

Query: 205 TPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTEN 243
             A                 P++          V  TE 
Sbjct: 745 LQAVEQQATHQPQVQAEAQSPASTTALTQTSSEVQDTEL 783

Length = 944

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 2/69 (2%)

Query: 138 SPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPP 197
           +P P +     P P   +  PP  +PP   P   P  P+++ P  +P  P A  P     
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPP--VPPAAPARPAAARPAPAPAPPAAAAPPARSA 438

Query: 198 PPTQTPPTP 206
            P       
Sbjct: 439 DPAAAASAG 447

Length = 576

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 6/77 (7%)

Query: 81  ASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPP 140
               P          +     + PPP + PP    PP +   P  + P+P   PPA + P
Sbjct: 378 ERGAPAPPSAAWGAPTPAAP-AAPPPAAAPP---VPPAAPARPAAARPAPAPAPPAAAAP 433

Query: 141 PSNPPSNLPPPPPSSVE 157
           P+   S  P    S+ +
Sbjct: 434 PA--RSADPAAAASAGD 448

Length = 576

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 3/92 (3%)

Query: 102 SPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKR 161
           S P   S     +  P  + P   +P +  +   A +P P+  P       PS       
Sbjct: 161 SVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPS---QANV 217

Query: 162 SPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPS 193
              + P    P  P  + P  +  A ++ P +
Sbjct: 218 DTAATPAPAAPATPDGAAPLPTDQAGVSTPAA 249

Length = 331

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 23/124 (18%), Positives = 33/124 (26%), Gaps = 8/124 (6%)

Query: 102 SPPPPVSNPPTRSPPPPSSTP-PPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPK 160
            PP   +  P            P    P P   P   + P     +   P  P++     
Sbjct: 635 FPPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSR--VARGDPVRPTAHHAAL 692

Query: 161 RSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPN 220
           R      PQ P P          PP P     +   P  +    +P +P  P P  +   
Sbjct: 693 R-----APQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPGAEQA 747

Query: 221 SPPP 224
               
Sbjct: 748 DGAE 751

Length = 753

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 1/80 (1%)

Query: 44  PVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPP-TSSPPPSPPASSPPTIS 102
           P+S+  T   PP+   +    + +   +     +  P   PP  S P P   A  P    
Sbjct: 114 PLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAP 173

Query: 103 PPPPVSNPPTRSPPPPSSTP 122
              P   P  R+ P  +  P
Sbjct: 174 AAKPPPTPVARADPRETRVP 193

Length = 418

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 16/80 (20%), Positives = 23/80 (28%), Gaps = 4/80 (5%)

Query: 86  TSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPP 145
           T   PP+   ++                 P   + TP P +   P     A  P P+   
Sbjct: 120 TGGAPPAAAPAAAAAAKAEKT----TPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAA 175

Query: 146 SNLPPPPPSSVEPPKRSPPS 165
              P P   +     R P S
Sbjct: 176 KPPPTPVARADPRETRVPMS 195

Length = 418

>gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane glycoprotein G

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 43/173 (24%), Positives = 61/173 (35%), Gaps = 10/173 (5%)

Query: 29  PPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSS 88
           P       K++  P  VS P    P    P S P T     A++    S    S  P  +
Sbjct: 168 PKTAVTTSKTTSWPTEVSHPTY--PSQVTPQSQPATQGHQTATANQRLS----STEPVGT 221

Query: 89  PPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNL 148
              +  ++  P   PPP     P+ SP  P ST   +   S   D   ++     PP+  
Sbjct: 222 QGTTTSSNPEPQTEPPPS-QRGPSGSPQHPPSTTSQDQ--STTGDGQEHTQRRKTPPATS 278

Query: 149 PPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQ 201
               P S   P  +        P P P+++    S P P + PP     P TQ
Sbjct: 279 NRRSPHSTATPPPTTKRQETGRPTPRPTATTQSGSSP-PHSSPPGVQANPTTQ 330

Length = 408

>gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane glycoprotein G

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 39/191 (20%), Positives = 61/191 (31%), Gaps = 15/191 (7%)

Query: 35  PPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPP 94
           P  +       S P   S P  P    P +  +       T++   +S  P  +   +  
Sbjct: 168 PKTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTS 227

Query: 95  ASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPS 154
           ++  P   PPP     P+ SP  P ST   +   S   D   ++     PP+      P 
Sbjct: 228 SNPEPQTEPPPS-QRGPSGSPQHPPSTTSQDQ--STTGDGQEHTQRRKTPPATSNRRSPH 284

Query: 155 SVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRP 214
           S   P  +        P P P+++    S P            P +  P   A+P     
Sbjct: 285 STATPPPTTKRQETGRPTPRPTATTQSGSSP------------PHSSPPGVQANPTTQNL 332

Query: 215 SNSSPNSPPPP 225
            +     PP P
Sbjct: 333 VDCKELDPPKP 343

Length = 408

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 20/66 (30%), Positives = 27/66 (40%)

Query: 37  KSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPAS 96
                PP  +     +P PSPPAS     S+ PAS+    SP   S   T+   PS    
Sbjct: 81  TGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVP 140

Query: 97  SPPTIS 102
           S  + +
Sbjct: 141 SSGSDA 146

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 4/47 (8%)

Query: 120 STPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSV 166
           ++ PP +PP PP  PP    PPS PP   PPPP  +V+   R   S+
Sbjct: 2   ASLPPGNPPPPP--PPPGFEPPSQPP--PPPPPGVNVKKRSRKQLSI 44

Length = 2365

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 21/75 (28%), Positives = 33/75 (44%)

Query: 58  PASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPP 117
            +S+ PTS S   +S  +SS   +S P ++SP P     S  ++   P +   P  S P 
Sbjct: 1   SSSSNPTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPS 60

Query: 118 PSSTPPPNSPPSPPS 132
           P S   P +  +   
Sbjct: 61  PPSVTLPPAATTQTP 75

Length = 590

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 3/58 (5%)

Query: 54  PPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPP 111
            P+  A  P   +    S   TS P  A+    +  PP  P ++PP         +  
Sbjct: 271 QPATAAPAPSRMTDTNDSKSVTSQPAAAA---AAPAPPPNPPATPPEPPARRGRGSAA 325

Length = 656

>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 18/94 (19%)

Query: 375 LGEGGFGSVY------------KGYLPDGRE-----VAIKQLKIGGGQGER-EFKAEVEI 416
           LGEG FG V+            K +  D        VA+K L+    +  R +F  E++I
Sbjct: 13  LGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKI 72

Query: 417 ISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL 450
           +SR+   +++ L+  CI+ D   +I +Y+ N  L
Sbjct: 73  MSRLKDPNIIRLLAVCITSDPLCMITEYMENGDL 106

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues with the highest levels found in skeletal muscle, skin, kidney and lung. It is important in cell proliferation and development. Mice, with a deletion of DDR2, suffer from dwarfism and delayed healing of epidermal wounds. DDR2 also contributes to collagen (type I) regulation by inhibiting fibrillogenesis and altering the morphology of collagen fibers. It is also expressed in immature dendritic cells (DCs), where it plays a role in DC activation and function. Length = 296

>gnl|CDD|223041 PHA03321, PHA03321, tegument protein VP11/12; Provisional

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 63/250 (25%), Positives = 80/250 (32%), Gaps = 33/250 (13%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPP----------PPVSNPPKSSPPPPPVSKPPTT 51
           S   PG PA    + PPP       S P             + P    P       P   
Sbjct: 427 SRQPPGAPAPRRDNDPPPPPRARPGSTPACARRARAQRARDAGPEYVDPLGALRRLPAGA 486

Query: 52  SPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVS--- 108
           +PPP P A+  P +        P   PP      T  P   PPA++PP     P +    
Sbjct: 487 APPPEPAAAPSPATYYTRMGGGPPRLPPRNRATETLRPDWGPPAAAPPEQMEDPYLEPDD 546

Query: 109 -NPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVP 167
                R     ++T  P   P+P  DP       S  P     P P   + P   P    
Sbjct: 547 DRFDRRDGAAAAATSHPREAPAPDDDPIYEGVSDSEEPVYEEIPTPRVYQNPLPRPMEGA 606

Query: 168 PQNPPPPPSSSP--------------PKNSPPAPIAVPPSNVPPPPTQTPPTPASPIA-P 212
            + P     +SP              P  SPP     P    PP P  +P  PA P   P
Sbjct: 607 GEPPDLDAPTSPWVEEENPIYGWGDSPLFSPPPAARFP----PPDPALSPEPPALPAHRP 662

Query: 213 RPSNSSPNSP 222
           RP   +P+ P
Sbjct: 663 RPGALAPDGP 672

Length = 694

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 15/87 (17%)

Query: 373 NLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKA--------------EVEII 417
             LGEG +G V K Y    G+ VAIK++KI     +                   E++I+
Sbjct: 15  AHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIM 74

Query: 418 SRIHHRHLVSLVGYCISDDRRLLIYDY 444
           + I H +++ LV   +  D   L+ D 
Sbjct: 75  NEIKHENIMGLVDVYVEGDFINLVMDI 101

Length = 335

>gnl|CDD|234229 TIGR03490, Mycoplas_LppA, mycoides cluster lipoprotein, LppA/P72 family

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 27/125 (21%), Positives = 35/125 (28%), Gaps = 16/125 (12%)

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTP 122
           P SS    S    S+    S  P             P I P     N P     P +  P
Sbjct: 12  PISSISFLSVVSCSTTSSNSKQP----------EKKPEIKPN---ENTPKIPKKPDNKEP 58

Query: 123 PPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKN 182
             N+     ++      P S  P   P P  +  E      P   P+ P   P +  P N
Sbjct: 59  SENNNNKSNNENKDEENPSSTNPEKKPDPSKNKEEI---EKPKDEPKKPDKKPQADQPNN 115

Query: 183 SPPAP 187
                
Sbjct: 116 VHADQ 120

Members of this protein family occur in Mycoplasma mycoides, Mycoplasma hyopneumoniae, and related Mycoplasmas in small paralogous families that may also include truncated forms and/or pseudogenes. Members are predicted lipoproteins with a conserved signal peptidase II processing and lipid attachment site. Note that the name for certain characterized members, p72, reflects an anomalous apparent molecular weight, given a theoretical MW of about 61 kDa. Length = 541

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 374 LLGEGGFGSVYKG-YL---PDGREVAIKQLKIGGGQGERE-FKAEVEIISRIHHRHLVSL 428
            +GEG FG VY+G Y+    +   VA+K  K       RE F  E  I+ +  H H+V L
Sbjct: 13  CIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKL 72

Query: 429 VGYCISD 435
           +G    +
Sbjct: 73  IGVITEN 79

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 21/133 (15%), Positives = 37/133 (27%)

Query: 24  PTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASN 83
           P            +++   P   +    +   +   ++   S S        SS P    
Sbjct: 780 PQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPARPP 839

Query: 84  PPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSN 143
              + PPP+  + S  +                 P    P   P +      A + PP+ 
Sbjct: 840 GAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAG 899

Query: 144 PPSNLPPPPPSSV 156
            P+  P P P   
Sbjct: 900 APAPRPRPAPRVK 912

Length = 1352

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 4/78 (5%)

Query: 182 NSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPST 241
              PAP    P+   P P +  P P++     P  ++  + PP    R +  P    P  
Sbjct: 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTR----PKAAAAANIPPKEPVRETATPPPVPPRP 416

Query: 242 ENTPGNGTNPSSPESSSS 259
              P   T  S+P+ + +
Sbjct: 417 VAPPVPHTPESAPKLTRA 434

Length = 585

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 28/129 (21%), Positives = 37/129 (28%), Gaps = 3/129 (2%)

Query: 132 SDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVP 191
             P   SP    P + LP P P               Q     P+ SP  N P       
Sbjct: 46  EFPWDPSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFA--L 103

Query: 192 PSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNP 251
           P+    P  QT P    P    P   + N    P  +         +      P +G  P
Sbjct: 104 PAGPAGPTIQTEPGQLYP-VQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLP 162

Query: 252 SSPESSSSP 260
           S  +S+   
Sbjct: 163 SQQQSAQKN 171

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|220749 pfam10428, SOG2, RAM signalling pathway protein

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 28/131 (21%), Positives = 41/131 (31%), Gaps = 6/131 (4%)

Query: 39  SPPPPPVSKPPTTSPPPSPPASNPPTSS-SPPASSPPTSSPPPASNPPTSSPPPSPPASS 97
            PP     +   T+ P S  A N P S    P S  PT    P+S+P + S P +  + S
Sbjct: 149 GPPLQHRKRDAVTASPSSMIARNTPISDRLRPRSVTPTRGRRPSSSPRSLSNPTTLESPS 208

Query: 98  PPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVE 157
              +     V  P +      S+     +     S     S          P    SS+ 
Sbjct: 209 NLQV--TTDVPPPYSNGTSRSSTMSSSANLSIISSLATPRSGESFRS---TPTSGSSSIN 263

Query: 158 PPKRSPPSVPP 168
           P      +   
Sbjct: 264 PVSGLDEAEED 274

SOG2 proteins in Saccharomyces cerevisiae are involved in cell separation and cytokinesis. Length = 419

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.6 bits (101), Expect = 4e-04
 Identities = 10/74 (13%), Positives = 19/74 (25%)

Query: 59  ASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPP 118
              PP+        P     P A     +    +   ++    +    V +    +  PP
Sbjct: 388 QEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPP 447

Query: 119 SSTPPPNSPPSPPS 132
           +    P       S
Sbjct: 448 APAAAPQPAVRLNS 461

Length = 598

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.6 bits (101), Expect = 4e-04
 Identities = 12/71 (16%), Positives = 23/71 (32%)

Query: 34  NPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSP 93
            PP                  P+  A+    +++P A  P  +          ++ PP+P
Sbjct: 390 GPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAP 449

Query: 94  PASSPPTISPP 104
            A+  P +   
Sbjct: 450 AAAPQPAVRLN 460

Length = 598

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.6 bits (101), Expect = 4e-04
 Identities = 13/70 (18%), Positives = 20/70 (28%)

Query: 117 PPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPS 176
           PPS       PP     P A +   +   +   P            P +      PP P+
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPA 450

Query: 177 SSPPKNSPPA 186
           ++P       
Sbjct: 451 AAPQPAVRLN 460

Length = 598

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.6 bits (101), Expect = 4e-04
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 3/71 (4%)

Query: 52  SPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSP---PTISPPPPVS 108
            P P      PP     P +    ++P  A+  P +  P +  A+ P      + PP  +
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPA 450

Query: 109 NPPTRSPPPPS 119
             P  +    S
Sbjct: 451 AAPQPAVRLNS 461

Length = 598

>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.8 bits (100), Expect = 4e-04
 Identities = 32/201 (15%), Positives = 50/201 (24%), Gaps = 6/201 (2%)

Query: 64  TSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPP 123
           T+    A+  P   P P +    +    +  A+ P       PVSN      PP    P 
Sbjct: 384 TAEKETAAKKP--QPRPEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWEDAPD 441

Query: 124 PNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNS 183
                +  +   A S   ++     P    S  +       +   + P   P  + P N 
Sbjct: 442 EAQTAAGTAQTSAKSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSENPIQATP-ND 500

Query: 184 PPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTEN 243
                       P  P         P    P       PPP                 E 
Sbjct: 501 EAVETETFAHEAPAEPF---YGYGFPDNDCPPEDGAEIPPPDWEHAAPADTAGGGADEEA 557

Query: 244 TPGNGTNPSSPESSSSPSNNG 264
             G     ++P +     +  
Sbjct: 558 EAGGIGGNNTPSAPPPEFSTE 578

Length = 709

>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 24/159 (15%), Positives = 33/159 (20%), Gaps = 2/159 (1%)

Query: 27  SPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPT 86
           SP         +           T+           P   +       TS+      PP 
Sbjct: 20  SPEGSRDENFDAERDDFLTPLGSTSEATSEDDDDLYPPRETGSGGGVATSTIYTVPRPPR 79

Query: 87  SSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPS 146
                     S P     PP   P        +S+P   +  + P      + P    P 
Sbjct: 80  GPEQTLDKPDSLPASRELPPGPTPVPPGGFRGASSPRLGADSTSPRFLYQVNFPVILAPI 139

Query: 147 NLPPPP--PSSVEPPKRSPPSVPPQNPPPPPSSSPPKNS 183
                     S E     PP              P   S
Sbjct: 140 GESNSSSEELSEEEEHSRPPPSESLKVKNGGKVYPKGFS 178

Length = 580

>gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566)

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 23/130 (17%), Positives = 37/130 (28%), Gaps = 5/130 (3%)

Query: 54  PPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPP--PSPPASSPPTISPPPPVSNPP 111
             S  + +    +S P SS          +   SS P   + PAS P +       S+  
Sbjct: 2   AASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTSSSSS 61

Query: 112 TRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNP 171
                   S+       S    P   SP  +   ++L     ++      SP        
Sbjct: 62  FGLSKQRPSSLSRGRLSSRFVSPSRGSPSAA---ASLNGSLATASTSGSSSPSRSRRTTS 118

Query: 172 PPPPSSSPPK 181
               S + P 
Sbjct: 119 SDLSSGNGPS 128

Family of related proteins that is plant specific. Length = 313

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 9/77 (11%)

Query: 119 SSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSS 178
              PP  +P S P+  P  SPP S P S +   P S+V          P +      +  
Sbjct: 83  KVAPPAATPTSAPT--PTPSPPAS-PASGMSAAPASAV------EEKSPSEESATATAPE 133

Query: 179 PPKNSPPAPIAVPPSNV 195
            P  S P+  +   S +
Sbjct: 134 SPSTSVPSSGSDAASTL 150

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 2/77 (2%)

Query: 67  SPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNS 126
           S P +     +PP A+     +P PSPPAS    +S  P  +          ++   P S
Sbjct: 75  SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPES 134

Query: 127 PPSPPSDPPANSPPPSN 143
           P    S P + S   S 
Sbjct: 135 P--STSVPSSGSDAAST 149

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 7/86 (8%)

Query: 65  SSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPP 124
           SSS   +S   S    +S+  + S PPS  ++SP      P  S+       P     P 
Sbjct: 1   SSSSNPTSRSQSHASSSSSSSSQSSPPS--STSPRPRRRKPSASSLLH---TPSILPLPK 55

Query: 125 NSPPSPPSDPPANSPPPSNPPSNLPP 150
            S PSPPS      P  +     L P
Sbjct: 56  LSSPSPPSVTLP--PAATTQTPQLNP 79

Length = 590

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 7/77 (9%)

Query: 375 LGEGGFGSVYKGYLPD------GREVAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVS 427
           LG+G FG VY+G             VAIK +       ER EF  E  ++   +  H+V 
Sbjct: 14  LGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVR 73

Query: 428 LVGYCISDDRRLLIYDY 444
           L+G   +    L++ + 
Sbjct: 74  LLGVVSTGQPTLVVMEL 90

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 11/57 (19%), Positives = 17/57 (29%)

Query: 23 PPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPP 79
           P  +PP P + P    P           +P  + P +  P    P     P  +  
Sbjct: 16 QPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASL 72

Length = 475

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 23/155 (14%), Positives = 32/155 (20%), Gaps = 2/155 (1%)

Query: 3    APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
               P    +NSS             P        KS       S            +   
Sbjct: 1210 DDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEG 1269

Query: 63   PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTP 122
               ++P   S    SPPP S  P          SSP        +    + +        
Sbjct: 1270 KPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLE--GSLAALKKKKKS 1327

Query: 123  PPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVE 157
               +     S         S     L  P     +
Sbjct: 1328 EKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSD 1362

Length = 1388

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 18/90 (20%), Positives = 25/90 (27%)

Query: 18  PPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSS 77
           P  +      PP   +   ++     P   P T +PP +P    P     P         
Sbjct: 57  PAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPK 116

Query: 78  PPPASNPPTSSPPPSPPASSPPTISPPPPV 107
           P P       +PP   P   P       P 
Sbjct: 117 PKPKPQQKVEAPPAPKPEPKPVVEEKAAPT 146

Length = 226

>gnl|CDD|217495 pfam03326, Herpes_TAF50, Herpesvirus transcription activation factor (transactivator)

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 51/222 (22%), Positives = 69/222 (31%), Gaps = 14/222 (6%)

Query: 13  SSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASS 72
             +P P +  P +   P P S  P+ S     V    T SP          TS+ P A +
Sbjct: 215 GFTPHPSLPQPQSPLKPSPSSARPQQSESFSDVWPASTQSP-------REETSAEPLAPA 267

Query: 73  PPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPS 132
            P+S  P  +     +             S  P  S+      P PS+T P   PP+   
Sbjct: 268 SPSSRRPSTAQEEQIACSSPQAEPEQGVQSYVPQSSDSRPSCFPAPSTTQPTFLPPNTNK 327

Query: 133 DPPANSPPPSNPPSNLPPPPPSSVEPPKRS-----PPSVPPQNPPP-PPSSSPPKNSPPA 186
               +  P    P        S              PS   Q+PP   P  S   ++P  
Sbjct: 328 KAKRDRRPQMVTPKQEGGAAVSQNHDGGTVRAPRGRPSGSGQSPPSNSPLLSSLADTPSG 387

Query: 187 PIAVPPSNVPPPPTQTPPTPASPIAPR-PSNSSPNSPPPPST 227
               P S +PP   Q     AS   P  P +S    P     
Sbjct: 388 AAHQPASLLPPAVVQQQLEDASDKQPPTPGSSLVPQPDEQEL 429

This family includes EBV BRLF1 and similar ORF 50 proteins from other herpesviruses. Length = 500

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.5 bits (100), Expect = 5e-04
 Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 7/97 (7%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
           + P+  P  + +++  P   +P   S     S P   S   P  + P  +  PP+    N
Sbjct: 384 TQPAAAPQPSAAAAASP---SPSQSSAAAQPSAPQ--SATQPAGTPPTVSVDPPAAVPVN 438

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSP 98
           PP  S+ P +  P         P +      P    P
Sbjct: 439 PP--STAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRP 473

Length = 614

>gnl|CDD|220749 pfam10428, SOG2, RAM signalling pathway protein

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 24/136 (17%), Positives = 36/136 (26%), Gaps = 10/136 (7%)

Query: 51  TSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNP 110
           +S  P          ++ P+S    ++P    +        +P     P+ SP    +  
Sbjct: 146 SSLGPPLQHRKRDAVTASPSSMIARNTP---ISDRLRPRSVTPTRGRRPSSSPRSLSNPT 202

Query: 111 PTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQN 170
              SP     T        PP      S   +   S       S   P  RS  S     
Sbjct: 203 TLESPSNLQVTTD-----VPPPYSNGTSRSSTMSSSANLSIISSLATP--RSGESFRSTP 255

Query: 171 PPPPPSSSPPKNSPPA 186
                S +P      A
Sbjct: 256 TSGSSSINPVSGLDEA 271

SOG2 proteins in Saccharomyces cerevisiae are involved in cell separation and cytokinesis. Length = 419

>gnl|CDD|223044 PHA03325, PHA03325, nuclear-egress-membrane-like protein; Provisional

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 31/160 (19%), Positives = 41/160 (25%), Gaps = 1/160 (0%)

Query: 96  SSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSS 155
           SS   ++   P S P  RS    +             D  +    P   P++LPPPP   
Sbjct: 259 SSAFMLNSSLPTSAPKRRSRRAGAMRAAAGETADLADDDGSEHSDPEPLPASLPPPPVRR 318

Query: 156 VEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPS 215
                       P       +  P + +         S        T P  +   A    
Sbjct: 319 PRVKHPEAGKEEPDGARNAEAKEPAQPATSTSSKGSSSAQNKDSGSTGPGSSLAAASSFL 378

Query: 216 NSS-PNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSP 254
                 SPP   T  L   P   V S    P       S 
Sbjct: 379 EDDDFGSPPLDLTTSLRHMPSPSVTSAPEPPSIPLTYLSD 418

Length = 418

>gnl|CDD|183854 PRK13042, PRK13042, superantigen-like protein; Reviewed

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 95  ASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNL--PPPP 152
           A++P +     P S PP+     P S P   +PPS   + P  +P  + P S     P  
Sbjct: 30  ATTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAPQQTPNATTPSSTKVETPQS 89

Query: 153 PSSVEPPKRSPP 164
           P++ + P    P
Sbjct: 90  PTTKQVPTEINP 101

Length = 291

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 42.3 bits (99), Expect = 5e-04
 Identities = 20/87 (22%), Positives = 27/87 (31%), Gaps = 1/87 (1%)

Query: 54  PPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTR 113
           PP+PP    P    P   +         +  PT  P    PA  P   +P       P +
Sbjct: 173 PPNPP-REAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQ 231

Query: 114 SPPPPSSTPPPNSPPSPPSDPPANSPP 140
            P  P+  P P +P   P         
Sbjct: 232 QPVQPAQQPTPQNPAQQPPQTEQGHKR 258

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 42.7 bits (101), Expect = 5e-04
 Identities = 27/181 (14%), Positives = 38/181 (20%), Gaps = 18/181 (9%)

Query: 14   SSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSP 73
             S          +     V +  K      P +K   +S   S    +    + P  SS 
Sbjct: 1183 KSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSG--SDQEDDEEQKTKPKKSSV 1240

Query: 74   PTSSPPPASNPPTS---SPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSP 130
                    ++  +S       S   S        P   +    SPPPPS  P   S    
Sbjct: 1241 KRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGS 1300

Query: 131  PSDPPANSPPPS--------NPPSNLPPPPP-----SSVEPPKRSPPSVPPQNPPPPPSS 177
                P                               S     + S          P    
Sbjct: 1301 KPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKK 1360

Query: 178  S 178
            S
Sbjct: 1361 S 1361

Length = 1388

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 22/103 (21%), Positives = 31/103 (30%), Gaps = 3/103 (2%)

Query: 58  PASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPP 117
           P         P A+    + PP  +     +   + P+  P T++PP     P      P
Sbjct: 47  PGDRDEPDMMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEP 106

Query: 118 PSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPK 160
           P   P     P P       +PP   P    P P       P 
Sbjct: 107 PKPKPVEKPKPKPKPQQKVEAPPAPKPE---PKPVVEEKAAPT 146

Length = 226

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 26/104 (25%), Positives = 36/104 (34%), Gaps = 5/104 (4%)

Query: 43  PPVSKPPTTSPPPSPPASNPPTSSSPP----ASSPPTSSPPPASNPPTSSPPPSPPASSP 98
           P V KP     P   PA+     + PP     +     +  P+ +P T +PP +P    P
Sbjct: 42  PLVPKPGDRDEPDMMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEP 101

Query: 99  PTISPPPP-VSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPP 141
             + PP P     P   P P      P +P   P         P
Sbjct: 102 APVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAAP 145

Length = 226

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 15/101 (14%)

Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 3   ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 61

Query: 416 IISRIHHRHLVSLVGYCISDDRRLL--------IYDYVPNN 448
           +++ + + H+  L+G C++   +L+        + DYV  +
Sbjct: 62  VMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREH 102

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 371 DQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           ++ +LG+G +G VY    L     +AIK++     +  +    E+ + S + HR++V  +
Sbjct: 12  ERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYL 71

Query: 430 GYCISDDRRLLIYDYVPNNTLYFHLHGKW 458
           G    +    +  + VP  +L   L  KW
Sbjct: 72  GSDSENGFFKIFMEQVPGGSLSALLRSKW 100

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|218056 pfam04388, Hamartin, Hamartin protein

 Score = 42.3 bits (99), Expect = 5e-04
 Identities = 30/136 (22%), Positives = 44/136 (32%), Gaps = 12/136 (8%)

Query: 55  PSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRS 114
                S+    S   +S+ P SSP  A  P  S P  +  + S         + +  T  
Sbjct: 264 DPTETSSEDGYSFSRSSAYPNSSPRQALPPSISLPQNTSTSGS---------LHSAQTSR 314

Query: 115 PPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPP---PSSVEPPKRSPPSVPPQNP 171
            P  +     +S        P++    + PPS++   P     S        P       
Sbjct: 315 RPNTTFDKAASSGTKDSLWSPSSLCGMATPPSSIGMSPLILSLSPSHLSGRAPGTTGSGK 374

Query: 172 PPPPSSSPPKNSPPAP 187
             P S S P  SPP P
Sbjct: 375 GEPASESTPSTSPPPP 390

This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein pfam03542. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterized by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation either TSC1 or TSC2 tumour suppressor gene. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin pfam03542. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking. Length = 667

>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown]

 Score = 42.5 bits (100), Expect = 5e-04
 Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 3/76 (3%)

Query: 84  PPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSN 143
                      A + P    P    +  +   PPP    P     +P ++ P+  P PS 
Sbjct: 49  KAAEQMAAPEAAEAAPL---PAAAESIASPEVPPPVPPAPAQEGEAPAAEQPSAVPAPSA 105

Query: 144 PPSNLPPPPPSSVEPP 159
            P+   P  PS    P
Sbjct: 106 APAPAEPVEPSLAANP 121

Length = 931

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 5/84 (5%)

Query: 372 QNLLGEGGFGSVYKGYL--PDGRE--VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLV 426
           + ++G G FG V +G L  P  RE  VAIK LK G  + +R +F +E  I+ +  H +++
Sbjct: 9   EEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNII 68

Query: 427 SLVGYCISDDRRLLIYDYVPNNTL 450
            L G        ++I +++ N  L
Sbjct: 69  HLEGVVTKSRPVMIITEFMENGAL 92

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 35/167 (20%), Positives = 50/167 (29%), Gaps = 14/167 (8%)

Query: 60  SNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPS 119
           SNP    +  A +     P        SSPP    A+                 S     
Sbjct: 759 SNPSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASK 818

Query: 120 STPPPNSP------PSPPSDPPANSPPP------SNPPSNLPPPPPSSVEPPKRSPPSVP 167
                ++P        P   P A + PP      S+          +  +  +R P    
Sbjct: 819 RKSRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPE 878

Query: 168 PQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRP 214
           P+  P     +PPK +  AP A  P+  P P  +    P  P  P P
Sbjct: 879 PRARPGAA--APPKAAAAAPPAGAPAPRPRPAPRVKLGPMPPGGPDP 923

Length = 1352

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 41.7 bits (98), Expect = 6e-04
 Identities = 34/188 (18%), Positives = 47/188 (25%), Gaps = 9/188 (4%)

Query: 76  SSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPP 135
           S+  PA  PP             P     P       R+   P   P  +  P+     P
Sbjct: 91  SAGEPAPPPP---HARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYP 147

Query: 136 ANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSP--PAPIAVPPS 193
           A    P   P   P          ++     PP+ P   P+S  P+         A  P 
Sbjct: 148 AYQQRPE--PGAWPRAADDY--GWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPE 203

Query: 194 NVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSS 253
                     P P      R     P  PP         P           P   + P  
Sbjct: 204 YDQRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRPSAPGP 263

Query: 254 PESSSSPS 261
             +  +P+
Sbjct: 264 LAAQPAPA 271

Length = 617

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.9 bits (99), Expect = 6e-04
 Identities = 22/85 (25%), Positives = 29/85 (34%), Gaps = 2/85 (2%)

Query: 167 PPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPS 226
           P        ++S P N  PAP   PP     P        A+  +P P+ +SP  P P  
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 227 TKRLSPPPGIPVPSTENTPGNGTNP 251
               SP P  P  +    P      
Sbjct: 421 PTEPSPTP--PANAANAPPSLNLEE 443

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.9 bits (99), Expect = 6e-04
 Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 2/76 (2%)

Query: 170 NPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKR 229
                 +  PP+ SPP P   P   +P P    PP    P  P  + +S N+P       
Sbjct: 517 ASNTAKTPPPPQKSPPPP--APTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADS 574

Query: 230 LSPPPGIPVPSTENTP 245
             PPP    P+   T 
Sbjct: 575 SPPPPIPEEPTPSPTK 590

Length = 620

>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 22/145 (15%), Positives = 42/145 (28%), Gaps = 5/145 (3%)

Query: 90  PPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLP 149
           PPS    +  +     P ++  + S               P +   + S P   P  +  
Sbjct: 648 PPSRAPPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGSAPAPPPVPDPY 707

Query: 150 PPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASP 209
             PP   E P+ +  +  P N       +  ++   A  +     V    T  P   A  
Sbjct: 708 DRPP-WEEAPEVASANDGPNN---AAEGNLSESVEDASNS-ELQAVEQQATHQPQVQAEA 762

Query: 210 IAPRPSNSSPNSPPPPSTKRLSPPP 234
            +P  + +   +        L+   
Sbjct: 763 QSPASTTALTQTSSEVQDTELNLVL 787

Length = 944

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 3/67 (4%)

Query: 120 STPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSP 179
           +  PP++    P+     +PPP+  P   P PP +   P    P   P       P +  
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAP---PVPPAAPARPAAARPAPAPAPPAAAAPPARS 437

Query: 180 PKNSPPA 186
              +  A
Sbjct: 438 ADPAAAA 444

Length = 576

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.8 bits (99), Expect = 6e-04
 Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 6/77 (7%)

Query: 164 PSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPP 223
           P  P      PP       +P A  A   +     P    P  A    P  + ++   P 
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAA--AAAPAAGGPAAALAAVPDAAAAAAAPPA 448

Query: 224 PPSTKRLSPPPGIPVPS 240
           P +     P P + + S
Sbjct: 449 PAAA----PQPAVRLNS 461

Length = 598

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.8 bits (99), Expect = 6e-04
 Identities = 12/70 (17%), Positives = 23/70 (32%)

Query: 31  PVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPP 90
           P S       PP     P   +   +P A+    ++  PA++        A+     +P 
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPA 450

Query: 91  PSPPASSPPT 100
            +P  +    
Sbjct: 451 AAPQPAVRLN 460

Length = 598

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.0 bits (98), Expect = 6e-04
 Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 2/109 (1%)

Query: 6   PGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTS 65
            GP +  +++ P P +  P  + P     P  ++P  P  S  P+   P       PP S
Sbjct: 387 EGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDDAPPAPPRS 446

Query: 66  SSPPASSP--PTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPT 112
             PP  +P  P +SP P +    +S   +PP    P+ +     S P T
Sbjct: 447 GIPPRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAEHTPSGPRT 495

Length = 624

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 41.8 bits (98), Expect = 6e-04
 Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 17/93 (18%)

Query: 45  VSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPP 104
           VSKP T +   +PP     T +S P    PT SPP +   P S    +P ++        
Sbjct: 74  VSKPKTGTGKVAPP---AATPTSAPT---PTPSPPAS---PASGMSAAPASAVEE----- 119

Query: 105 PPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPAN 137
               +P   S    +   P  S PS  SD  + 
Sbjct: 120 ---KSPSEESATATAPESPSTSVPSSGSDAAST 149

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 42.3 bits (99), Expect = 6e-04
 Identities = 19/35 (54%), Positives = 20/35 (57%), Gaps = 9/35 (25%)

Query: 140 PPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPP 174
           PP NPP   PPPPP   EPP + PP      PPPP
Sbjct: 5   PPGNPP---PPPPPPGFEPPSQPPP------PPPP 30

Length = 2365

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 4/77 (5%)

Query: 108 SNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVP 167
           ++         SS+   +SPPS  S  P    P ++   + P   P     PK S PS P
Sbjct: 7   TSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPL----PKLSSPSPP 62

Query: 168 PQNPPPPPSSSPPKNSP 184
               PP  ++  P+ +P
Sbjct: 63  SVTLPPAATTQTPQLNP 79

Length = 590

>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown]

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 21/78 (26%), Positives = 28/78 (35%), Gaps = 8/78 (10%)

Query: 140 PPSNPPSNLPPPPPSSVEPPKR---SPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVP 196
            P    +     P ++   P        + P   PP PP+ +       AP A  PS VP
Sbjct: 45  GPVAKAAEQMAAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQE---GEAPAAEQPSAVP 101

Query: 197 PPPTQTPPTPASPIAPRP 214
            P     P PA P+ P  
Sbjct: 102 APSAA--PAPAEPVEPSL 117

Length = 931

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V+ GY     +VAIK LK G    E  F AE  ++ ++ H  LV L    ++
Sbjct: 14  LGAGQFGEVWMGYYNGHTKVAIKSLKQGSMSPE-AFLAEANLMKQLQHPRLVRLYA-VVT 71

Query: 435 DDRRLLIYDYVPNNTL 450
            +   +I +Y+ N +L
Sbjct: 72  QEPIYIITEYMENGSL 87

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 30/84 (35%), Positives = 43/84 (51%)

Query: 70  ASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPS 129
           A +   +   PA+     +PPP PP+++    +P  P   PP  +PP P    P  +PP 
Sbjct: 24  AGASAVAIALPATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPP 83

Query: 130 PPSDPPANSPPPSNPPSNLPPPPP 153
           PP+DP A  PPP +P +  PP P 
Sbjct: 84  PPADPNAPPPPPVDPNAPPPPAPE 107

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor

 Score = 42.0 bits (98), Expect = 6e-04
 Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 10/114 (8%)

Query: 35  PPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPP 94
           P K  P  P +      S   +P  S   ++++  + SP T   P  S  P +    SPP
Sbjct: 551 PGKGVPYIPGLFAGNPGSTNSTPTGSAASSNTTFSSDSPSTVVAPSTS--PPAGHLGSPP 608

Query: 95  ASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNL 148
           A+    +S        P+ SPP      P  +P SP S     S   ++P S++
Sbjct: 609 ATPSKIVS--------PSTSPPASHLGSPSTTPSSPESSIKVASTETASPESSI 654

Length = 670

>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 18/94 (19%)

Query: 375 LGEGGFGSVYKGYLPDGRE-----------------VAIKQLKIGGGQGER-EFKAEVEI 416
           LGEG FG V+   + + ++                 VA+K L+    +  R +F  EV+I
Sbjct: 13  LGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKI 72

Query: 417 ISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL 450
           +SR+   +++ L+G C+ +D   +I +Y+ N  L
Sbjct: 73  LSRLKDPNIIRLLGVCVDEDPLCMITEYMENGDL 106

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.9 bits (99), Expect = 7e-04
 Identities = 17/76 (22%), Positives = 22/76 (28%)

Query: 162 SPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNS 221
           S       N   P + +P  N  P P  + PS        T P+P    A  P       
Sbjct: 362 SAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEP 421

Query: 222 PPPPSTKRLSPPPGIP 237
             P  T   +     P
Sbjct: 422 TEPSPTPPANAANAPP 437

Length = 620

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.8 bits (99), Expect = 7e-04
 Identities = 12/66 (18%), Positives = 20/66 (30%)

Query: 134 PPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPS 193
           PP+       PP     P   +      +  + P    P    ++ P  +  A     P+
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPA 450

Query: 194 NVPPPP 199
             P P 
Sbjct: 451 AAPQPA 456

Length = 598

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.8 bits (99), Expect = 7e-04
 Identities = 14/71 (19%), Positives = 20/71 (28%)

Query: 106 PVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPS 165
           P S       PP     P     +      A +P    P + L   P ++        P+
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPA 450

Query: 166 VPPQNPPPPPS 176
             PQ      S
Sbjct: 451 AAPQPAVRLNS 461

Length = 598

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 6/78 (7%)

Query: 16  PPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPT 75
           P    +              PK++ P P    PP  S P  P A+ PP    P  ++ P 
Sbjct: 125 PAAAPAAAAAAKAEKTTPEKPKAAAPTPE---PPAASKPTPPAAAKPPE---PAPAAKPP 178

Query: 76  SSPPPASNPPTSSPPPSP 93
            +P   ++P  +  P S 
Sbjct: 179 PTPVARADPRETRVPMSR 196

Length = 418

>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 23/87 (26%), Positives = 26/87 (29%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
                P  A    P P V      + P P S      P P PV +P  +     P    P
Sbjct: 120 ETVADPIQALQPRPRPDVEEVLVPAAPEPPSYEETIKPGPAPVEEPVDSMAIAVPAIDTP 179

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSP 89
            T   PPA  PP    P  S       
Sbjct: 180 VTLELPPAPQPPPPVVPQPSTMVVHRR 206

This minor capsid protein may act as a link between the external capsid and the internal DNA-protein core. The C-terminal 11 residues may function as a protease cofactor leading to enzyme activation. Length = 238

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 41.5 bits (96), Expect = 8e-04
 Identities = 32/147 (21%), Positives = 53/147 (36%), Gaps = 4/147 (2%)

Query: 70  ASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPP--VSNPPTRSPPPPSSTPPPNSP 127
           A++        A      S   S  A++P   +  P    + P   +  P  +   P   
Sbjct: 194 AAAAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKA 253

Query: 128 PSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKN--SPP 185
            +PP+   A     + PP+    PP  +  PP ++          P  +++ P    + P
Sbjct: 254 AAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAP 313

Query: 186 APIAVPPSNVPPPPTQTPPTPASPIAP 212
           A  A PP+    PP +    PA   AP
Sbjct: 314 AKAAAPPAKAAAPPAKAATPPAKAAAP 340

Length = 357

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 14/60 (23%), Positives = 18/60 (30%), Gaps = 2/60 (3%)

Query: 40  PPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPP 99
               P +  P  S       S   TS   PA++    +PPP        PP      S  
Sbjct: 268 AAAQPATAAPAPSRMTDTNDSKSVTS--QPAAAAAAPAPPPNPPATPPEPPARRGRGSAA 325

Length = 656

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 41.0 bits (97), Expect = 8e-04
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 375 LGEGGFGSVYKG-YLPDGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVG 430
           LG+G  G VYK  + P G+  A+K++ + G  +  ++   E++ +      ++V   G
Sbjct: 9   LGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYG 66

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572)

 Score = 41.3 bits (97), Expect = 8e-04
 Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 3/88 (3%)

Query: 55  PSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRS 114
            + P+    +SS    +S    S    S  P+SS       +S     P   +S+   R 
Sbjct: 224 DNTPSPKSGSSSPAKPTSILKKSAAKRSEAPSSS---KAKKNSRGIPKPRDALSSLVVRK 280

Query: 115 PPPPSSTPPPNSPPSPPSDPPANSPPPS 142
              P ST    S   P S+ P  +   S
Sbjct: 281 KAAPESTSQSPSSAEPTSESPQTAGNSS 308

Family of eukaryotic proteins with undetermined function. Length = 321

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 3/87 (3%)

Query: 368 GFADQNLLGEGGFGSVYK-GYLPDGREVAIKQLKIGG-GQGEREFKA-EVEIISRIHHRH 424
            F     LG+G +GSVYK   L D +  A+K++ +G   Q ERE    E+ I++ ++H +
Sbjct: 1   DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPN 60

Query: 425 LVSLVGYCISDDRRLLIYDYVPNNTLY 451
           ++S     +  ++  ++ +Y P   L 
Sbjct: 61  IISYKEAFLDGNKLCIVMEYAPFGDLS 87

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 40.7 bits (96), Expect = 8e-04
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 13/71 (18%)

Query: 359 YEELVKATDGFADQNLLGEGGFGSVYK-GYLPDGREVAIKQLKIGG-GQGERE-FKAEVE 415
           YE L            +G+G FG+V K     DG+ +  K++  G   + E++   +EV 
Sbjct: 2   YEVL----------ETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVN 51

Query: 416 IISRIHHRHLV 426
           I+  + H ++V
Sbjct: 52  ILRELKHPNIV 62

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog

 Score = 41.5 bits (97), Expect = 8e-04
 Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 1/93 (1%)

Query: 50  TTSPPPSPPAS-NPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVS 108
            T  P  P  + N   S +    +  + SP  +     +    SP   SP T   P P+ 
Sbjct: 4   ETKEPEDPADNVNDVVSEASSPETDLSLSPSQSEQNIENDGQNSPETQSPLTELQPSPLP 63

Query: 109 NPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPP 141
              T   P   S    +S    P +P +  P P
Sbjct: 64  PNTTLDAPVSDSQGDESSSEQQPQNPNSTEPAP 96

Length = 808

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.3 bits (97), Expect = 9e-04
 Identities = 16/97 (16%), Positives = 24/97 (24%), Gaps = 1/97 (1%)

Query: 163 PPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSP 222
                P+    P   + P  +P    A   S  P   +      A   A +P+ + P   
Sbjct: 370 SGGRGPKQHIKP-VFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVS 428

Query: 223 PPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSS 259
             P       PP     +                 SS
Sbjct: 429 VDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSS 465

Length = 614

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.6 bits (97), Expect = 9e-04
 Identities = 31/120 (25%), Positives = 45/120 (37%), Gaps = 6/120 (5%)

Query: 48  PPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPV 107
            P+ S    P +    T  +P    P  ++P     P +++P    P+++P   SP  P 
Sbjct: 380 APSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAP---SPRVPW 436

Query: 108 SNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVP 167
            + P   P PP S  PP   P  P   P    P S   ++  PP            PS P
Sbjct: 437 DDAP---PAPPRSGIPPRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAEHTPSGP 493

Length = 624

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 41.0 bits (96), Expect = 9e-04
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
                 PPAA  +S P P  +PP        + P  +     P  +  T    P  P+++
Sbjct: 80  GTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATA-TAPESPSTS 138

Query: 62  PPTSSSPPASS 72
            P+S S  AS+
Sbjct: 139 VPSSGSDAAST 149

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 41.6 bits (98), Expect = 9e-04
 Identities = 18/72 (25%), Positives = 27/72 (37%)

Query: 46  SKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPP 105
           S P + S   +  +S+  + SSPP+S+ P       S       P   P     + SPP 
Sbjct: 4   SNPTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPS 63

Query: 106 PVSNPPTRSPPP 117
               P   +  P
Sbjct: 64  VTLPPAATTQTP 75

Length = 590

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 29/180 (16%), Positives = 37/180 (20%), Gaps = 15/180 (8%)

Query: 99  PTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEP 158
           P+   P P    P         T  P  P            P ++      P        
Sbjct: 90  PSAGEPAP----PPPHAR---RTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTA 142

Query: 159 PKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPA----SPIAPRP 214
               P       P   P ++         +  PP      P    P          A RP
Sbjct: 143 RPAYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRP 202

Query: 215 SNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNG----TNPSSPESSSSPSNNGIGTAGT 270
                             P        E  PG G      P  PE   +P      +A  
Sbjct: 203 EYDQRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRPSAPG 262

Length = 617

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 13/83 (15%), Positives = 17/83 (20%)

Query: 176 SSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPG 235
           S S    +   P        P P    P   A+   P P    P +    S      P  
Sbjct: 514 SGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPAD 573

Query: 236 IPVPSTENTPGNGTNPSSPESSS 258
              P         +         
Sbjct: 574 SSPPPPIPEEPTPSPTKDSSPEE 596

Length = 620

>gnl|CDD|217835 pfam03999, MAP65_ASE1, Microtubule associated protein (MAP65/ASE1 family)

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 24/113 (21%), Positives = 33/113 (29%), Gaps = 16/113 (14%)

Query: 160 KRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSP 219
           K+          PP  S+     S P+       N+      TP    +P   + S S  
Sbjct: 447 KKLANKTSTVMEPPYGSTESSVPSTPSTRR-NDRNITSN---TPSLKRTPNLTKSSLSQE 502

Query: 220 NSPPPPSTK------------RLSPPPGIPVPSTENTPGNGTNPSSPESSSSP 260
            S    ST              L   P     S  N   +G N ++    SSP
Sbjct: 503 ASLISKSTGNTHKHSTPRRLTTLPKLPAASRSSKGNLIRSGANGNASSDLSSP 555

Length = 619

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 41.2 bits (96), Expect = 0.001
 Identities = 40/165 (24%), Positives = 55/165 (33%), Gaps = 13/165 (7%)

Query: 79  PPASNPPTSSPPPSPPASSPPTISPPPPVSNP---PTRSPPPPSSTPPPNSPPSPPSDPP 135
           P  +NP +       P  +     P  P+  P   P + P  P +       P  P  P 
Sbjct: 716 PAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQ 775

Query: 136 ANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNV 195
                P  P      P P   +P +   P    Q P  P +  P    P  P+A  P   
Sbjct: 776 PQYQQPQQPV----APQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQ 831

Query: 196 PPPPTQTPPTPASPIAP---RPSNSSP---NSPPPPSTKRLSPPP 234
            P     P    + + P   R  +S P    + P PS   L+PPP
Sbjct: 832 QPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPP 876

Length = 1355

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 162 SPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNS 221
            P +      P  P++ PP  +PP P A P       P   P  PA+   P  S + P +
Sbjct: 384 PPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARS-ADPAA 442

Query: 222 PP 223
             
Sbjct: 443 AA 444

Length = 576

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 9/102 (8%)

Query: 70  ASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPS 129
             S P  +        T +P      +   + +P          +  P  +  P  +   
Sbjct: 159 GQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAV--------ATAPAPAVDPQQNAVV 210

Query: 130 PPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNP 171
            PS    ++     P +    P  ++  P  ++  S P  +P
Sbjct: 211 APSQANVDTAATPAPAAP-ATPDGAAPLPTDQAGVSTPAADP 251

Length = 331

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.0 bits (97), Expect = 0.001
 Identities = 6/70 (8%), Positives = 15/70 (21%)

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPK 181
           PP              +P      +       +       +  +  P       +   P 
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPA 450

Query: 182 NSPPAPIAVP 191
            +P   + + 
Sbjct: 451 AAPQPAVRLN 460

Length = 598

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.0 bits (97), Expect = 0.001
 Identities = 10/67 (14%), Positives = 17/67 (25%)

Query: 126 SPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPP 185
             P      P         P+    P  ++  P    P +     P    +++ P     
Sbjct: 392 PSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPAA 451

Query: 186 APIAVPP 192
           AP     
Sbjct: 452 APQPAVR 458

Length = 598

>gnl|CDD|223044 PHA03325, PHA03325, nuclear-egress-membrane-like protein; Provisional

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 32/157 (20%), Positives = 45/157 (28%), Gaps = 5/157 (3%)

Query: 31  PVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPP 90
             +    SS P     +    +      A      +    S      P PAS PP   P 
Sbjct: 259 SSAFMLNSSLPTSAPKRRSRRAGAMRAAAGETADLADDDGSEHSDPEPLPASLPP--PPV 316

Query: 91  PSPPASSPPTISPPPPVSNPPTRSPP--PPSSTPPPNSPPSPPSDPPANSPPPSNPPSNL 148
             P    P      P  +       P  P +ST    S  +   D  +  P  S   ++ 
Sbjct: 317 RRPRVKHPEAGKEEPDGARNAEAKEPAQPATSTSSKGSSSAQNKDSGSTGPGSSLAAASS 376

Query: 149 PPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPP 185
                    PP     S+    P P  +S+P   S P
Sbjct: 377 FLEDDDFGSPPLDLTTSL-RHMPSPSVTSAPEPPSIP 412

Length = 418

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.2 bits (96), Expect = 0.001
 Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 9/135 (6%)

Query: 49  PTTSPPPSPPASNPPTSSSPP--ASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPP 106
           P  S  PS   ++ P+ S+    AS    + P P +  P  + P +    S    + P P
Sbjct: 367 PVESLRPSGGGASAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAP 426

Query: 107 VSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSV 166
                  S  P    P  ++PP+PP       P P  P ++  P  P SV     +PP++
Sbjct: 427 -------SAAPSPRVPWDDAPPAPPRSGIPPRPAPRMPEASPVPGAPDSVASASDAPPTL 479

Query: 167 PPQNPPPPPSSSPPK 181
              +     + S P+
Sbjct: 480 GDPSDTAEHTPSGPR 494

Length = 624

>gnl|CDD|227430 COG5099, COG5099, RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 45/280 (16%), Positives = 75/280 (26%), Gaps = 15/280 (5%)

Query: 12  NSSSPPPPVSNP--PTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPP 69
            SSS  P  +         P   S  P  +    P S   T S   SP  + PP  S   
Sbjct: 174 ASSSSQPLTNLVVSSIKRFPYLTSLSPFFNYLIDPSSDSATASADTSPSFNPPPNLSPNN 233

Query: 70  ASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPS 129
             S    SP P +    ++   +  +S     S    V           S+     +  S
Sbjct: 234 LFSTSDLSPLPDTQSVENNIILNSSSSINELTSIYGSV-PSIRNLRGLNSALVSFLNVSS 292

Query: 130 PPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIA 189
                 A +    +P  +     PS+    +  P S P        ++         P  
Sbjct: 293 SSLAFSALNGKEVSPTGS-----PSTRSFARVLPKSSPNNLLTEILTTG-VNPPQSLPSL 346

Query: 190 VPPSNVPPPPTQTPPTPASPIAPRPSNSS-PNSPPPPSTKRLSPPPGIPVPSTENT---- 244
           + P  +      +    +  + P  +      S         + P      ST N     
Sbjct: 347 LNPVFLSTSTGFSLTNLSGYLNPNKNLKKNTLSSLSNLGYSSNVPSPSSSESTRNILGNI 406

Query: 245 -PGNGTNPSSPESSSSPSNNGIGTAGTVVIAVAVGIIAFS 283
            P   T+ +    +S        ++      +    I  S
Sbjct: 407 SPNFKTSSNLTNLNSLLKEKLSNSSSVSATDILGPSIIVS 446

Length = 777

>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 24/160 (15%), Positives = 40/160 (25%), Gaps = 5/160 (3%)

Query: 70  ASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPS 129
           A      +P  +++  TS                    S   T   PP       + P S
Sbjct: 31  AERDDFLTPLGSTSEATSEDDDDLYPPRETGSGGGVATSTIYTVPRPPRGPEQTLDKPDS 90

Query: 130 PPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIA 189
            P+       P   PP          +     SP  +   N P   +     NS      
Sbjct: 91  LPASRELPPGPTPVPPGGFRGASSPRLGADSTSPRFLYQVNFPVILAPIGESNSS----- 145

Query: 190 VPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKR 229
               +     ++ PP+ +  +               + KR
Sbjct: 146 SEELSEEEEHSRPPPSESLKVKNGGKVYPKGFSKHKTHKR 185

Length = 580

>gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed

 Score = 41.2 bits (96), Expect = 0.001
 Identities = 26/116 (22%), Positives = 40/116 (34%), Gaps = 6/116 (5%)

Query: 50  TTSPPPSPPASNPPTSSSPPASSPPTSSP---PPASNPPTSSPPPSPPASSPPTISPPPP 106
           T       P+S    SS+   SS    SP   P +    +++   +   +       P  
Sbjct: 298 TVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSD 357

Query: 107 VSNPPTRSPP---PPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPP 159
           V+ P T + P   P +  P P S          N    +N P+   P  P+S  P 
Sbjct: 358 VTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPV 413

Length = 421

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 21/90 (23%), Positives = 27/90 (30%), Gaps = 1/90 (1%)

Query: 48  PPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPV 107
           PP  +P P  P +   +S        P  +  P    P   P    PA  P       PV
Sbjct: 176 PPREAPAPGLPKTFT-SSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPV 234

Query: 108 SNPPTRSPPPPSSTPPPNSPPSPPSDPPAN 137
                 +P  P+  PP        S    N
Sbjct: 235 QPAQQPTPQNPAQQPPQTEQGHKRSREQGN 264

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 1/74 (1%)

Query: 56  SPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSP 115
           S   ++   S +  +SS  + S PP+S          P ASS        P+    + SP
Sbjct: 3   SSNPTSRSQSHASSSSSSSSQSSPPSS-TSPRPRRRKPSASSLLHTPSILPLPKLSSPSP 61

Query: 116 PPPSSTPPPNSPPS 129
           P  +  P   +   
Sbjct: 62  PSVTLPPAATTQTP 75

Length = 590

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 21/78 (26%), Positives = 29/78 (37%)

Query: 38  SSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASS 97
           SS  P   S+   +S   S   S+PP+S+SP       S+      P     P     S 
Sbjct: 2   SSSNPTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSP 61

Query: 98  PPTISPPPPVSNPPTRSP 115
           P    PP   +  P  +P
Sbjct: 62  PSVTLPPAATTQTPQLNP 79

Length = 590

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 36 PKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSP 93
              P P P S     +PPP    + P T ++ PA++ P +   P  + P     P P
Sbjct: 13 EAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAE-KPKKDKPRRERKPKP 69

Length = 475

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 27 SPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPP-PASN 83
            P P    P ++P PPP +K    +   + PA+  P +  P    P     P PAS 
Sbjct: 15 EQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASL 72

Length = 475

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 4/58 (6%)

Query: 110 PPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVP 167
            P  +PP P++ P P  P    +     + P +  P    P      + P+R     P
Sbjct: 16  QPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKK----DKPRRERKPKP 69

Length = 475

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 21/99 (21%), Positives = 29/99 (29%), Gaps = 6/99 (6%)

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSN------LPPPPPSSVEPPKRSPPSVPPQNPPPPP 175
           P P     P   P A    P+ PP               S++P   +PP+ P +  P P 
Sbjct: 45  PKPGDRDEPDMMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPV 104

Query: 176 SSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRP 214
               PK          P      P    P P   +  + 
Sbjct: 105 EPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKA 143

Length = 226

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 18/80 (22%), Positives = 23/80 (28%), Gaps = 1/80 (1%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKP-PTTSPPPSPPAS 60
           + P  G   A  +      S  P    PP     P+ +P  PP  KP     P P P   
Sbjct: 65  TQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQK 124

Query: 61  NPPTSSSPPASSPPTSSPPP 80
                +  P   P       
Sbjct: 125 VEAPPAPKPEPKPVVEEKAA 144

Length = 226

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 28/106 (26%), Positives = 34/106 (32%), Gaps = 9/106 (8%)

Query: 84  PPTSSPPPSPPASSPPTISPPPP--VSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPP 141
           P     P   PA++    + PP              PS  P   +PP+ P +P    P P
Sbjct: 47  PGDRDEPDMMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPE---PAP 103

Query: 142 SNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAP 187
             PP     P P     PK  P       P P P   P      AP
Sbjct: 104 VEPP----KPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAAP 145

Length = 226

>gnl|CDD|218056 pfam04388, Hamartin, Hamartin protein

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 25/126 (19%), Positives = 34/126 (26%), Gaps = 21/126 (16%)

Query: 10  AANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVS---KPPTTSPPPSPPA------- 59
            ++        S+    S P     P  S P     S       TS  P+          
Sbjct: 268 TSSEDGYSFSRSSAYPNSSPRQALPPSISLPQNTSTSGSLHSAQTSRRPNTTFDKAASSG 327

Query: 60  --------SNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPP 111
                   S+    ++PP+S   +      S    S   P    S       P   S P 
Sbjct: 328 TKDSLWSPSSLCGMATPPSSIGMSPLILSLSPSHLSGRAPGTTGSGKGE---PASESTPS 384

Query: 112 TRSPPP 117
           T  PPP
Sbjct: 385 TSPPPP 390

This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein pfam03542. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterized by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation either TSC1 or TSC2 tumour suppressor gene. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin pfam03542. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking. Length = 667

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 4/93 (4%)

Query: 375 LGEGGFGSVYKGYLPD-GREVAIKQL---KIGGGQGEREFKAEVEIISRIHHRHLVSLVG 430
           LG+GGFG V    +   G+  A K+L   ++   +GE+    E +I+ ++  R +VSL  
Sbjct: 1   LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAY 60

Query: 431 YCISDDRRLLIYDYVPNNTLYFHLHGKWQLGFD 463
              + D   L+   +    L +H++   + GF 
Sbjct: 61  AFETKDDLCLVMTLMNGGDLKYHIYNVGEPGFP 93

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 28/112 (25%), Positives = 38/112 (33%), Gaps = 6/112 (5%)

Query: 115 PPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPP 174
            PP +  PPP     P  +P     PP   P  +P P P     PK  P  V      P 
Sbjct: 59  EPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPK 118

Query: 175 PSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPS 226
               P +  P +P           P +   + A+  A +P  S  + P   S
Sbjct: 119 REVKPVEPRPASP------FENTAPARPTSSTATAAASKPVTSVSSGPRALS 164

Length = 246

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 10/83 (12%)

Query: 374 LLGEGGFGSVYKG-YLPDGREVAIKQLKI--GGGQGEREFKA-------EVEIISRIHHR 423
           L+G G FGSVY G     G  +A+KQ+++       +   ++       E+ ++  + H 
Sbjct: 7   LIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHE 66

Query: 424 HLVSLVGYCISDDRRLLIYDYVP 446
           ++V  +G  +  D   +  +YVP
Sbjct: 67  NIVQYLGSSLDADHLNIFLEYVP 89

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|217509 pfam03353, Lin-8, Ras-mediated vulval-induction antagonist

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 154 SSVEPPKRSPPSVPPQNPPPPP---------------SSSPPKNSPPAPIAVPPSNVPPP 198
           S++  P+    SVP Q  PP P               S+S  + S P P + PP  VP P
Sbjct: 190 STMSRPQEVKQSVPAQQAPPNPQQPMPSASSESATSKSASTSRESSPQPQSPPPRRVPAP 249

Query: 199 PTQTPPTPASPIAPR 213
              +    A  I  +
Sbjct: 250 TVDSTAKEAEQITYQ 264

LIN-8 is a nuclear protein, present at the sites of transcriptional repressor complexes, which interacts with LIN-35 Rb.Lin35 Rb is a product of the class B synMuv gene lin-35 which silences genes required for vulval specification through chromatin modification and remodelling. The biological role of the interaction has not yet been determined however predictions have been made. The interaction shows that class A synMuv genes control vulval induction through the transcriptional regulation of gene expression. LIN-8 normally functions as part of a protein complex however when the complex is absent, other family members can partially replace LIN-8 activity. Length = 316

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 373 NLLGEGGFGSVYKGYL--PDGREV--AIKQL-KIGGGQGEREFKAEVEIISRIHHRHLVS 427
            ++G+G FG VY G L   DG+++  A+K L +I   +   +F  E  I+    H +++S
Sbjct: 1   RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLS 60

Query: 428 LVGYCISDD 436
           L+G C+  +
Sbjct: 61  LLGICLPSE 69

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory factor

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 1/76 (1%)

Query: 51  TSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNP 110
               P P  S         + S P+      S+P T +PPP+  + SPP  +   P++  
Sbjct: 296 NGVEPEPTGSVSDRPRHLSSDSSPSPPDTSDSDPSTETPPPASLSHSPPA-AFERPLALS 354

Query: 111 PTRSPPPPSSTPPPNS 126
           P R            S
Sbjct: 355 PKRKREGDKKQKKKKS 370

Replicative DNA polymerases are capable of polymerising tens of thousands of nucleotides without dissociating from their DNA templates. The high processivity of these polymerases is dependent upon accessory proteins that bind to the catalytic subunit of the polymerase or to the substrate. The Epstein-Barr virus (EBV) BMRF1 protein is an essential component of the viral DNA polymerase and is absolutely required for lytic virus replication. BMRF1 is also a transactivator. This family is predicted to have a UL42 like structure. Length = 381

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 18/89 (20%), Positives = 26/89 (29%), Gaps = 7/89 (7%)

Query: 84  PPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSN 143
           P       +PPA +P  ++          RS     +     +    P   P    PP+ 
Sbjct: 346 PSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPPA- 404

Query: 144 PPSNLPPPPPSSVEPPKRSPPSVPPQNPP 172
                 P P  S E P    P+  P    
Sbjct: 405 ------PEPARSAEAPPLVAPAAAPAGLA 427

Length = 504

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 15/80 (18%), Positives = 24/80 (30%), Gaps = 2/80 (2%)

Query: 31  PVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPP 90
           P       +PP P  +              +  ++ +  A      +P P  +P    PP
Sbjct: 346 PSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAA--TAAGAPLPDFDPRPRGPP 403

Query: 91  PSPPASSPPTISPPPPVSNP 110
              PA S        P + P
Sbjct: 404 APEPARSAEAPPLVAPAAAP 423

Length = 504

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 16/84 (19%), Positives = 24/84 (28%), Gaps = 2/84 (2%)

Query: 80  PASNPPTSSPPPSPPASSPPTISP--PPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPAN 137
           P+      +PP   PA     ++       S     +    ++  P       P  PPA 
Sbjct: 346 PSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPPAP 405

Query: 138 SPPPSNPPSNLPPPPPSSVEPPKR 161
            P  S     L  P  +      R
Sbjct: 406 EPARSAEAPPLVAPAAAPAGLALR 429

Length = 504

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 15/82 (18%), Positives = 22/82 (26%), Gaps = 2/82 (2%)

Query: 19  PVSNPPTISPPPPVSNPPKSSPPP--PPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTS 76
           P      ++PP P               V    +     +  A  P     P    PP  
Sbjct: 346 PSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPPAP 405

Query: 77  SPPPASNPPTSSPPPSPPASSP 98
            P  ++  P    P + PA   
Sbjct: 406 EPARSAEAPPLVAPAAAPAGLA 427

Length = 504

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 50/225 (22%), Positives = 61/225 (27%), Gaps = 5/225 (2%)

Query: 17  PPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTS 76
           P  V+       P    N      P P   +P       +PP+   P+   P        
Sbjct: 53  PEQVAKHELADAPLQQVNAALPPAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQ 112

Query: 77  SPPPASNP--PTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDP 134
            P P   P  P  S P  PPA  P    P PP   P         S P        P   
Sbjct: 113 QPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVP---QQQQYQSPPQQPQYQQNPPPQ 169

Query: 135 PANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSN 194
             ++P  S       P  P S  P +  P S+  Q P      S     PP P       
Sbjct: 170 AQSAPQVSGLYPEESPYQPQSYPPNEPLPSSMAMQPPYSGAPPSQQFYGPPQPSPYMYGG 229

Query: 195 VPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVP 239
               P    P+   P   +       S PPPS             
Sbjct: 230 PGGRPNSGFPSGQQPPPSQGQEGYGYSGPPPSKGNHGSVASYAPQ 274

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2); Provisional

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 59/248 (23%), Positives = 78/248 (31%), Gaps = 17/248 (6%)

Query: 41  PPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPT 100
           P  P   P     PP+P   NP  +    A            NP    PPP+      P 
Sbjct: 283 PVEPEPLPVPAPVPPTPEDDNPRPTDDEFAVPNFNEGLDVPDNPQDPVPPPNEGKDGNPN 342

Query: 101 IS--PPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEP 158
                PP     P  S  PP+   PPN P    S+  ++   P NPP+  P  P      
Sbjct: 343 EENLFPPGDDEVPDESNVPPN---PPNVPGGSNSEFSSDVENPPNPPN--PDIPEQEPNI 397

Query: 159 PKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSS 218
           P+ S   VP   P  P        + P            P    P       + +    +
Sbjct: 398 PEDSNKEVPEDVPMEPEDDRDNNFNEPKKPENKGDGQNEPVIPKPLDNERDQSNKNKQVN 457

Query: 219 PNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSS---------SPSNNGIGTAG 269
           P +    S  R + P G    +      N   P  PE S            SNNG   AG
Sbjct: 458 PGN-RHNSEDRYTRPHGRNNENRNYNNKNSDIPKHPERSEHEQPEDKKKKSSNNGYKIAG 516

Query: 270 TVVIAVAV 277
            V+  +A+
Sbjct: 517 GVIAGLAL 524

Length = 576

>gnl|CDD|133195 cd05064, PTKc_EphR_A10, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 372 QNLLGEGGFGSVYKGYL--PDGRE--VAIKQLKIGGGQGERE-FKAEVEIISRIHHRHLV 426
           + +LG G FG + +G L  P  RE  VAI  L+ G    +R  F AE   + +  H ++V
Sbjct: 10  ERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIV 69

Query: 427 SLVGYCISDDRRLLIYDYVPNNTL 450
            L G     +  +++ +Y+ N  L
Sbjct: 70  RLEGVITRGNTMMIVTEYMSNGAL 93

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). EphA10, which contains an inactive tyr kinase domain, may function to attenuate signals of co-clustered active receptors. EphA10 is mainly expressed in the testis. Ephrin/EphR interaction results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 40.2 bits (95), Expect = 0.001
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 18/87 (20%)

Query: 375 LGEGGFGSVYKG-YLPDGREVAIKQLKIGGGQGEREFKA--------EVEIISRI-HHRH 424
           LG+G FGSVY       G  VAIK++K       ++F +        EV+ + ++  H +
Sbjct: 7   LGDGTFGSVYLARNKETGELVAIKKMK-------KKFYSWEECMNLREVKSLRKLNEHPN 59

Query: 425 LVSLVGYCISDDRRLLIYDYVPNNTLY 451
           +V L      +D    +++Y+  N LY
Sbjct: 60  IVKLKEVFRENDELYFVFEYMEGN-LY 85

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 17/104 (16%), Positives = 29/104 (27%), Gaps = 1/104 (0%)

Query: 158 PPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNS 217
             +R   +     P     S+       AP     +            P    AP P+ +
Sbjct: 381 LERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPA 440

Query: 218 SPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPS 261
            P+            PP    PS +  P        P ++ +P+
Sbjct: 441 PPSPAGNAPAGGAPSPPPAAAPSAQPAPA-PAAAPEPTAAPAPA 483

Length = 824

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 40/179 (22%), Positives = 60/179 (33%), Gaps = 7/179 (3%)

Query: 101 ISPPPPVSNPPTRSPPPPSSTPPPNSPPS--PPSDPPANSPPPSNPPS---NLPPPPPSS 155
           + P    +    +  P    TP   SPP    P  P A  P P +P +   +L PP    
Sbjct: 328 VPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLKPPTSPI 387

Query: 156 VEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPS 215
             PP  SP S    +    P+      SP +   VP         +    P SP A R  
Sbjct: 388 PTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKT-RPLSPYA-RYE 445

Query: 216 NSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPSNNGIGTAGTVVIA 274
           +  P + P P+      P      S    P      ++ ++++ P  N    +   V  
Sbjct: 446 DLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVYD 504

Length = 576

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 40.6 bits (96), Expect = 0.002
 Identities = 17/99 (17%), Positives = 26/99 (26%), Gaps = 8/99 (8%)

Query: 163 PPSVPP-------QNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPS 215
           P SV P          P   ++     +  A  A  P+  P       P PA P A    
Sbjct: 22  PNSVDPSWREFFADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPA-PPAAAAP 80

Query: 216 NSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSP 254
            + P      +       P     +         +  +P
Sbjct: 81  AAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 2/80 (2%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
           +P+  P     +  P          P  P +   + +  P P S P     PP   +   
Sbjct: 383 SPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARS--A 440

Query: 63  PTSSSPPASSPPTSSPPPAS 82
           P   SP AS+P   +     
Sbjct: 441 PLPPSPQASAPRNVASGKPG 460

Length = 620

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 13/101 (12%), Positives = 23/101 (22%), Gaps = 9/101 (8%)

Query: 146 SNLPPPPPSSVEPPKRSPPSVPPQNPPP---PPSSSPPKNSPPAPIAVPPSNVPPPPTQT 202
           + L PP  ++    +  P + P     P       +P        +              
Sbjct: 49  AALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQ--REQLVARAA 106

Query: 203 PPTPASPIAPRPSNSSPNSPPPPS----TKRLSPPPGIPVP 239
            P      AP        +             +P P +P  
Sbjct: 107 APAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPAD 147

Length = 484

>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein UL32

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 27/226 (11%), Positives = 51/226 (22%), Gaps = 1/226 (0%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
           S     P     +  PPP S P +        +    S    P  KP             
Sbjct: 522 SIKELRPRIGFINKSPPPKSPPKSRRTLIVALSLASPSTAGSPRPKPSLGKFVIGTDPFA 581

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
              +     +    +    +  P  S+                     P +       + 
Sbjct: 582 FANTVRLTDNMRGGNGVGSSVKPKGSASSKPLTGPGSDLKPATLNGKTPSSSLVGAARNA 641

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPK 181
              +    P       SP      +       ++  P K++ P +   N       +   
Sbjct: 642 GASSKVKIPSGLGGFTSPISLLESALEDVLTSATSTPVKKNDPYLWDTNGEKAGGGTESA 701

Query: 182 NSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPST 227
           ++          N    P   P  P  P++    ++S         
Sbjct: 702 STTDVFQNFAGLN-KKTPVGGPFQPKPPLSRALDSASSPGGSGGKP 746

The large phosphorylated protein (UL32-like) of herpes viruses is the polypeptide most frequently reactive in immuno-blotting analyses with antisera when compared with other viral proteins. Length = 777

>gnl|CDD|220749 pfam10428, SOG2, RAM signalling pathway protein

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 25/125 (20%), Positives = 37/125 (29%), Gaps = 6/125 (4%)

Query: 32  VSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPP 91
           + N   S  PP    K    +  PS   +     S        T    P      SS P 
Sbjct: 141 LRNAWSSLGPPLQHRKRDAVTASPSSMIARNTPISDRLRPRSVT----PTRGRRPSSSPR 196

Query: 92  SPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPP 151
           S   S+P T+  P  +       PP  + T   ++  S  +    +S        +    
Sbjct: 197 SL--SNPTTLESPSNLQVTTDVPPPYSNGTSRSSTMSSSANLSIISSLATPRSGESFRST 254

Query: 152 PPSSV 156
           P S  
Sbjct: 255 PTSGS 259

SOG2 proteins in Saccharomyces cerevisiae are involved in cell separation and cytokinesis. Length = 419

>gnl|CDD|220749 pfam10428, SOG2, RAM signalling pathway protein

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 19/121 (15%), Positives = 33/121 (27%), Gaps = 3/121 (2%)

Query: 77  SPPPASNPPTSSPPPSPPASSPP-TISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPP 135
           S              +   SS     +P      P + +  P     P +SP S  +   
Sbjct: 146 SSLGPPLQHRKRDAVTASPSSMIARNTPISDRLRPRSVT--PTRGRRPSSSPRSLSNPTT 203

Query: 136 ANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNV 195
             SP      +++PPP  +          S          +    ++    P +   S  
Sbjct: 204 LESPSNLQVTTDVPPPYSNGTSRSSTMSSSANLSIISSLATPRSGESFRSTPTSGSSSIN 263

Query: 196 P 196
           P
Sbjct: 264 P 264

SOG2 proteins in Saccharomyces cerevisiae are involved in cell separation and cytokinesis. Length = 419

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 4/78 (5%)

Query: 10  AANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPP 69
                SP      PP     P       +             +  P+   +  P +++  
Sbjct: 388 QEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAP----AAGGPAAALAAVPDAAAAA 443

Query: 70  ASSPPTSSPPPASNPPTS 87
           A+ P  ++ P  +    S
Sbjct: 444 AAPPAPAAAPQPAVRLNS 461

Length = 598

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 15/71 (21%), Positives = 21/71 (29%), Gaps = 1/71 (1%)

Query: 141 PSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPT 200
           P +P      PP     P   +  + P      P +  P       P A   +   PP  
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAA-AAPPAP 449

Query: 201 QTPPTPASPIA 211
              P PA  + 
Sbjct: 450 AAAPQPAVRLN 460

Length = 598

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 4/75 (5%)

Query: 103 PPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRS 162
           PP P          PP     P +P +  +   A + P +  P+      P +       
Sbjct: 391 PPSPGGG----GGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAP 446

Query: 163 PPSVPPQNPPPPPSS 177
           P       P    +S
Sbjct: 447 PAPAAAPQPAVRLNS 461

Length = 598

>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.1 bits (93), Expect = 0.002
 Identities = 31/155 (20%), Positives = 40/155 (25%), Gaps = 13/155 (8%)

Query: 11  ANSSSPPPPVSNPPTISPPPPVSNPPKS--------SPPPPPVSKPPTTSPPPSPPASNP 62
            N+  PP   +     +         KS        +PP   VSK          P S  
Sbjct: 429 ENNDVPPWEDAPDEAQTAAGTAQTSAKSIQTASEAETPPENQVSKNKAADNETDAPLSEV 488

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTP 122
           P  S  P  + P             +P         P    PP         PPP     
Sbjct: 489 P--SENPIQATPNDEAVETETFAHEAPAEPFYGYGFPDNDCPP---EDGAEIPPPDWEHA 543

Query: 123 PPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVE 157
            P       +D  A +       +   PPP  S E
Sbjct: 544 APADTAGGGADEEAEAGGIGGNNTPSAPPPEFSTE 578

Length = 709

>gnl|CDD|223044 PHA03325, PHA03325, nuclear-egress-membrane-like protein; Provisional

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 32/155 (20%), Positives = 46/155 (29%), Gaps = 8/155 (5%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
           S+     P   S       +     +          S P P P S PP   P   P   +
Sbjct: 266 SSLPTSAPKRRSRRAGAMRAAAGETADLADDDGSEHSDPEPLPASLPP--PPVRRPRVKH 323

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
           P      P  +    +  PA    ++S   S  A +  + S  P  S     S       
Sbjct: 324 PEAGKEEPDGARNAEAKEPAQPATSTSSKGSSSAQNKDSGSTGPGSSLAAASSFLEDDDF 383

Query: 122 PPPNSPPSP-----PSDPPANSP-PPSNPPSNLPP 150
             P    +      PS    ++P PPS P + L  
Sbjct: 384 GSPPLDLTTSLRHMPSPSVTSAPEPPSIPLTYLSD 418

Length = 418

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.8 bits (95), Expect = 0.002
 Identities = 37/125 (29%), Positives = 50/125 (40%), Gaps = 8/125 (6%)

Query: 82  SNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSP-PSDPPANSPP 140
           ++ P+ S    P +    TI  P P +  P  + P    TP   +P +P PS  P+    
Sbjct: 378 ASAPSGSAAEGPASGGAATI--PTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPS---- 431

Query: 141 PSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPT 200
           P  P  + PP PP S  PP R  P +P  +P P    S    S   P    PS+      
Sbjct: 432 PRVPWDDAPPAPPRSGIPP-RPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAEHTP 490

Query: 201 QTPPT 205
             P T
Sbjct: 491 SGPRT 495

Length = 624

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
            PS   PA  + S  P    P   +PP     PP+S  PP P  + P  SP P  P S  
Sbjct: 415 TPSSAAPATPAPSAAPSPRVPWDDAPP----APPRSGIPPRPAPRMPEASPVPGAPDSVA 470

Query: 63  PTSSSPPASSPPTSSPPPASNPPTS 87
             S +PP    P+ +     + P +
Sbjct: 471 SASDAPPTLGDPSDTAEHTPSGPRT 495

Length = 624

>gnl|CDD|237015 PRK11901, PRK11901, hypothetical protein; Reviewed

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 22/148 (14%), Positives = 37/148 (25%), Gaps = 31/148 (20%)

Query: 39  SPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASN--------------- 83
           S P    +             + P   S+PP S  PT + PP +                
Sbjct: 93  SSPSAANNTSDGHDASGVKNTAPPQDISAPPISPTPTQAAPPQTPNGQQRIELPGNISDA 152

Query: 84  ----------------PPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSP 127
                             TS+ P +P   +P   +  P  +      P  P++  P  + 
Sbjct: 153 LSQQQGQVNAASQNAQGNTSTLPTAPATVAPSKGAKVPATAETHPTPPQKPATKKPAVNH 212

Query: 128 PSPPSDPPANSPPPSNPPSNLPPPPPSS 155
               +     +               SS
Sbjct: 213 HKTATVAVPPATSGKPKSGAASARALSS 240

Length = 327

>gnl|CDD|237015 PRK11901, PRK11901, hypothetical protein; Reviewed

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 31/155 (20%), Positives = 45/155 (29%), Gaps = 9/155 (5%)

Query: 108 SNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPP-SNPPSNLPPPPPSS----VEPPKRS 162
            N  + S    +S     S     + P   S PP S  P+   PP   +    +E P   
Sbjct: 90  GNQSSPSAANNTSDGHDASGVKNTAPPQDISAPPISPTPTQAAPPQTPNGQQRIELPGNI 149

Query: 163 PPSVPPQ----NPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSS 218
             ++  Q    N     +       P AP  V PS     P      P  P  P     +
Sbjct: 150 SDALSQQQGQVNAASQNAQGNTSTLPTAPATVAPSKGAKVPATAETHPTPPQKPATKKPA 209

Query: 219 PNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSS 253
            N     +        G P     +     + P+S
Sbjct: 210 VNHHKTATVAVPPATSGKPKSGAASARALSSAPAS 244

Length = 327

>gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed

 Score = 40.5 bits (94), Expect = 0.002
 Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 3/119 (2%)

Query: 14  SSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSP 73
           ++  P  +   + +  P  +  P  +  P  V+    T+   S  A +         + P
Sbjct: 302 AAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSDVTLP 361

Query: 74  PTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPS 132
            T + P A        P S   +   +       +N PT S P   + P  N P SP S
Sbjct: 362 GTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLP---AAPASNIPVSPTS 417

Length = 421

>gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed

 Score = 40.1 bits (93), Expect = 0.002
 Identities = 21/117 (17%), Positives = 33/117 (28%), Gaps = 6/117 (5%)

Query: 41  PPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPT 100
             P  +   +++  PS  A   P       ++   +          +        S    
Sbjct: 304 VTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSAT---TTQASAVALSSAGVLPSDVTL 360

Query: 101 ISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPP---PSNPPSNLPPPPPS 154
                  +  P    P P ST       +      AN P    P+ P SN+P  P S
Sbjct: 361 PGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPVSPTS 417

Length = 421

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 20/92 (21%), Positives = 28/92 (30%), Gaps = 6/92 (6%)

Query: 48  PPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPV 107
           PP  +PP   PA   P + +         +P P   P   +P   P   +P       P 
Sbjct: 173 PP--NPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNP----AQQPQ 226

Query: 108 SNPPTRSPPPPSSTPPPNSPPSPPSDPPANSP 139
             P  +   P     P N    PP     +  
Sbjct: 227 QQPQQQPVQPAQQPTPQNPAQQPPQTEQGHKR 258

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|225987 COG3456, COG3456, Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 28/132 (21%), Positives = 37/132 (28%), Gaps = 14/132 (10%)

Query: 44  PVSKPPTTSPPPSPPASNPPTSSSP------PASSPPTSSPPPASN--PPTSSPPPSPPA 95
           P    P T  P S  +S              P   P  + P   ++  P   S  P    
Sbjct: 109 PDESDPDTGSPQSAVSSTDMDDDFLADIEPEPRLPPGLTDPLQLADPVPNGFSADPLSAL 168

Query: 96  SSPPTISPPPP--VSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPP 153
            S   I+ P P   +   +R+   P S P        P     + PP     S  PP P 
Sbjct: 169 QSESLIAQPDPAGGAPSISRNSEAPLSDPASAGGIDTPFPDDLDVPPI--AAS--PPGPQ 224

Query: 154 SSVEPPKRSPPS 165
                    P  
Sbjct: 225 EGPTISASQPAQ 236

Length = 430

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 30 PPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSS 66
          PP + PP   PPPPP  +PP+  PPP PP  N    S
Sbjct: 5  PPGNPPP---PPPPPGFEPPSQPPPPPPPGVNVKKRS 38

Length = 2365

>gnl|CDD|220401 pfam09786, CytochromB561_N, Cytochrome B561, N terminal

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 40/195 (20%), Positives = 61/195 (31%), Gaps = 17/195 (8%)

Query: 54  PPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTR 113
             SPPAS   T  +      P  S    S   ++SP      SS    SP    SN P  
Sbjct: 117 KKSPPASKTSTPMNTSEPLVPGHSSFSDSPSRSASPSRKFSPSSTIQQSPQLTPSNKP-A 175

Query: 114 SPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPS--------------SVEPP 159
           SP     +P  +S   P +     S   S+P +                       V+  
Sbjct: 176 SPSSSYQSPSYSSSLGPVNSSGNRSNLRSSPWALRSSGDKKDITTDEKYLETFLAEVDEE 235

Query: 160 KRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSP 219
           +    S   +N  PP + +   +S  +P     S       ++    +  ++P P  S  
Sbjct: 236 QHMITSSAGKNATPPETINSFGSS--SPSFWNYSRNASDAARSLKKRSYQLSPSPVPSKQ 293

Query: 220 NSPPPPSTKRLSPPP 234
            +   P      PP 
Sbjct: 294 KASTSPKKGEGEPPN 308

Members of this family are found in the N terminal region of cytochrome B561, as well as in various other putative uncharacterized proteins. Length = 559

>gnl|CDD|234229 TIGR03490, Mycoplas_LppA, mycoides cluster lipoprotein, LppA/P72 family

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 19/96 (19%), Positives = 29/96 (30%), Gaps = 7/96 (7%)

Query: 44  PVSKPPTTSPPPSPPASNPPTSSSPPASSPP------TSSPPPASNPPTSSPPPSPPASS 97
             SK P   P   P  + P     P    P       +++       P+S+ P   P  S
Sbjct: 29  SNSKQPEKKPEIKPNENTPKIPKKPDNKEPSENNNNKSNNENKDEENPSSTNPEKKPDPS 88

Query: 98  PPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSD 133
                   P   P  +    P +  P N     P++
Sbjct: 89  KNKEEIEKPKDEPK-KPDKKPQADQPNNVHADQPNN 123

Members of this protein family occur in Mycoplasma mycoides, Mycoplasma hyopneumoniae, and related Mycoplasmas in small paralogous families that may also include truncated forms and/or pseudogenes. Members are predicted lipoproteins with a conserved signal peptidase II processing and lipid attachment site. Note that the name for certain characterized members, p72, reflects an anomalous apparent molecular weight, given a theoretical MW of about 61 kDa. Length = 541

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 28/76 (36%), Positives = 35/76 (46%)

Query: 100 TISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPP 159
            I+ P   +  P   PPPPS+     +P +PP  PP  +PP   P      PPP   +P 
Sbjct: 30  AIALPATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPN 89

Query: 160 KRSPPSVPPQNPPPPP 175
              PP V P  PPPP 
Sbjct: 90  APPPPPVDPNAPPPPA 105

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 20/93 (21%), Positives = 27/93 (29%)

Query: 28  PPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTS 87
             P  +  P+  P    V  P    PP       P  +           + P    P T 
Sbjct: 123 ADPIQALQPRPRPDVEEVLVPAAPEPPSYEETIKPGPAPVEEPVDSMAIAVPAIDTPVTL 182

Query: 88  SPPPSPPASSPPTISPPPPVSNPPTRSPPPPSS 120
             PP+P    P    P   V +  +R     SS
Sbjct: 183 ELPPAPQPPPPVVPQPSTMVVHRRSRIKRTRSS 215

This minor capsid protein may act as a link between the external capsid and the internal DNA-protein core. The C-terminal 11 residues may function as a protease cofactor leading to enzyme activation. Length = 238

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 18/89 (20%), Positives = 22/89 (24%), Gaps = 6/89 (6%)

Query: 44  PVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISP 103
           P       +PP   PA                 S   A     ++     P   P    P
Sbjct: 346 PSEGVAAVAPPAPAPADLTQR---LNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGP 402

Query: 104 PPPVSNPPTRSPPPPSSTPPPNSPPSPPS 132
           P P    P RS   P    P  +P     
Sbjct: 403 PAPE---PARSAEAPPLVAPAAAPAGLAL 428

Length = 504

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 50/238 (21%), Positives = 62/238 (26%), Gaps = 3/238 (1%)

Query: 32  VSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPP 91
           +S+    S          T  PP     +    + +P         P PA   P      
Sbjct: 29  LSHEEAQSSEAHSFHVDSTKQPPAPEQVAKHELADAPLQQVNAALPPAPAPQSPQPDQQQ 88

Query: 92  SPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPP 151
              A          P     +    P     P   PPS P  PPA  P    P      P
Sbjct: 89  QSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVP 148

Query: 152 PPSSVEPPKRSP---PSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPAS 208
                + P + P    + PPQ    P  S       P      P N P P +     P S
Sbjct: 149 QQQQYQSPPQQPQYQQNPPPQAQSAPQVSGLYPEESPYQPQSYPPNEPLPSSMAMQPPYS 208

Query: 209 PIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPSNNGIG 266
              P      P  P P         P    PS +  P +        S   PS    G
Sbjct: 209 GAPPSQQFYGPPQPSPYMYGGPGGRPNSGFPSGQQPPPSQGQEGYGYSGPPPSKGNHG 266

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 55/254 (21%), Positives = 78/254 (30%), Gaps = 4/254 (1%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
           A +P      +  P P   +P         + P    P   P  +  +    P+P     
Sbjct: 62  ADAPLQQVNAALPPAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPY 121

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTP 122
               S P   P          PP    P      SPP          P  +S P  S   
Sbjct: 122 YPPPSQPQPPPAQQPQAQQPQPPP-QVPQQQQYQSPPQQPQYQQNPPPQAQSAPQVSGLY 180

Query: 123 PPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVE---PPKRSPPSVPPQNPPPPPSSSP 179
           P  SP  P S PP    P S          P S +   PP+ SP         P      
Sbjct: 181 PEESPYQPQSYPPNEPLPSSMAMQPPYSGAPPSQQFYGPPQPSPYMYGGPGGRPNSGFPS 240

Query: 180 PKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVP 239
            +  PP+          PPP++      +  AP+ S+ S ++  P        P  +P+ 
Sbjct: 241 GQQPPPSQGQEGYGYSGPPPSKGNHGSVASYAPQGSSQSYSTAYPSLPAATVLPQALPMS 300

Query: 240 STENTPGNGTNPSS 253
           S   + G   +P S
Sbjct: 301 SAPMSGGGSGSPQS 314

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF; Provisional

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 32/202 (15%), Positives = 52/202 (25%), Gaps = 7/202 (3%)

Query: 10  AANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPP 69
            A S +P    +  P    P   + P  +       +         S         +   
Sbjct: 57  TARSDTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMALRQ 116

Query: 70  ASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPP-----VSNPPTRSPPPPSSTPPP 124
             S P  +P  A     S P P+  A +        P     +S  P +      +T P 
Sbjct: 117 PVSVPRQAPAAAPVRAASIPSPAAQALAHAAAVRTAPRQEHALSAVPEQLFADFLTTAPV 176

Query: 125 NSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSP 184
              P       A +P P+   +       +  +  +         +  P     PP   P
Sbjct: 177 PRAPVQAPVVAAPAPVPAIAAALAAHAAYAQDDDEQLDDDGFDLDDALPQ--ILPPAALP 234

Query: 185 PAPIAVPPSNVPPPPTQTPPTP 206
           P  +A              P P
Sbjct: 235 PIVVAPAAPAALAAVAAAAPAP 256

Length = 559

>gnl|CDD|218397 pfam05044, Prox1, Homeobox prospero-like protein (PROX1)

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 33/170 (19%), Positives = 55/170 (32%), Gaps = 12/170 (7%)

Query: 6   PGPPAANSSSPPPPVSNPPTISPPP--PVSNPPKSSPPPPPVSKPPT--------TSPPP 55
           P PP + ++     + N P   P    P   P ++      V+             +P  
Sbjct: 538 PKPPDSFANVAAAALYNSPFCMPQTPQPQDAPEQTEALSLVVTPKKKRHKVTDTRITPRT 597

Query: 56  SPPASNPPTSSSPPASS--PPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTR 113
                    +  P A +   P      +++     PP   P   P T++ P P  +    
Sbjct: 598 VSRILALRDAVGPAAGTHHQPLHPSSLSASMGFHPPPFRHPFPLPLTVAIPNPSLHQSEV 657

Query: 114 SPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSP 163
               P  +P   +P   P     +SP    P ++L P   S+   P  SP
Sbjct: 658 FMGYPFQSPHLGAPSGSPPGKDRDSPDLPRPTTSLHPKLLSAHHHPGSSP 707

The homeobox gene Prox1 is expressed in a subpopulation of endothelial cells that, after budding from veins, gives rise to the mammalian lymphatic system. Prox1 has been found to be an early specific marker for the developing liver and pancreas in the mammalian foregut endoderm. This family contains an atypical homeobox domain. Length = 908

>gnl|CDD|217512 pfam03359, GKAP, Guanylate-kinase-associated protein (GKAP) protein

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 24/154 (15%), Positives = 39/154 (25%), Gaps = 13/154 (8%)

Query: 13  SSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTT-------SPPPSPPASNPPTS 65
                     P +I      S     + P                         S+  T+
Sbjct: 2   GHKKAKKKRKPSSIGISDDESATDSEAEPKGFREFQSVGVQVEDEKLQRRRFKRSSSVTA 61

Query: 66  SSPPASSP---PTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSN---PPTRSPPPPS 119
           +          P        +    +    P      +   PPP S+     TR+     
Sbjct: 62  NVQADLELEGFPGLPVVRHVSTEDKALQFGPSFQRESSEDSPPPSSSTYSAGTRTVSTQG 121

Query: 120 STPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPP 153
            +   + P   PS   + S   +   S+LPPP P
Sbjct: 122 QSAYLSDPKRRPSSEASESETVAFDESDLPPPDP 155

Length = 342

>gnl|CDD|203146 pfam04995, CcmD, Heme exporter protein D (CcmD)

 Score = 35.9 bits (84), Expect = 0.002
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 276 AVGIIAFSLIGLVVWCLRRRKK 297
           + GI    L GL+VW LRRR++
Sbjct: 10  SYGITLLVLAGLIVWSLRRRRR 31

The CcmD protein is part of a C-type cytochrome biogenesis operon. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation. These proteins contain a predicted transmembrane helix. Length = 46

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 25/86 (29%), Positives = 30/86 (34%), Gaps = 2/86 (2%)

Query: 89  PPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNL 148
               P A  PP   P      PP  S   PS++  P +     S  P    P    PS  
Sbjct: 179 GGNIPGAIQPP--PPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAP 236

Query: 149 PPPPPSSVEPPKRSPPSVPPQNPPPP 174
           P   P+   PP     + PP  PP P
Sbjct: 237 PASIPAPPIPPVIQYVAPPPVPPPQP 262

Length = 582

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 369 FADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKA--EVEIISRIHHRHL 425
           F   N +G+G FG V+K     D R  A+KQ+ +         +A  E  +++++   ++
Sbjct: 2   FEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYI 61

Query: 426 VSLVGYCISDDRRLLIYDYVPNNTLYFHLH 455
           +      +   +  ++ +Y  N  L+  L 
Sbjct: 62  IRYYESFLDKGKLNIVMEYAENGDLHKLLK 91

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V+ G      +VAIK +   G   E +F  E +++ ++ H  LV L G C  
Sbjct: 12  LGSGQFGVVHLGKWRAQIKVAIKAIN-EGAMSEEDFIEEAKVMMKLSHPKLVQLYGVCTQ 70

Query: 435 DDRRLLIYDYVPNNTLYFHLHGK 457
                ++ +++ N  L  +L  +
Sbjct: 71  QKPLYIVTEFMENGCLLNYLRQR 93

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 5/87 (5%)

Query: 375 LGEGGFGSVYKG-YLPDGRE--VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVSLVG 430
           LG G FG V KG Y    ++  VAIK LK    +  R E   E EI+ ++ + ++V ++G
Sbjct: 3   LGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIG 62

Query: 431 YCISDDRRLLIYDYVPNNTLYFHLHGK 457
            C ++   +L+ +      L   L GK
Sbjct: 63  VCEAEA-LMLVMEMASGGPLNKFLSGK 88

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its phosphorylation and activation. It then phosphorylates target proteins, which propagate the signals to downstream pathways. Zap-70 is hardly detected in normal peripheral B-cells, but is present in some B-cell malignancies. It is used as a diagnostic marker for chronic lymphocytic leukemia (CLL) as it is associated with the more aggressive subtype of the disease. Length = 257

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 40.2 bits (93), Expect = 0.003
 Identities = 45/240 (18%), Positives = 76/240 (31%), Gaps = 16/240 (6%)

Query: 9   PAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSS- 67
               ++SPP   ++ P  + P      P ++   P V+  P+          +   SS  
Sbjct: 535 VTTTATSPPTGTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPT 594

Query: 68  ------PPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
                 P +S     S   ++ P  +S  P+   +        P  ++  T SP P   T
Sbjct: 595 SQQPGIPSSSHSTPRSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSPGPGPGT 654

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPK 181
               S P   S      P   +    +P P  +S   P     +VP        ++S  K
Sbjct: 655 TSQVSGPGNSSTSR--YPGEVHVTEGMPNPNATSPSAPSGQKTAVPTVTSTGGKANSTTK 712

Query: 182 NSPPAPIAVPPS-------NVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPP 234
            +  + +    S           P   T   P S  +      +  SPP  + +   P P
Sbjct: 713 ETSGSTLMASTSPHTNEGAFRTTPYNATTYLPPSTSSKLRPRWTFTSPPVTTKQATVPVP 772

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 39.7 bits (92), Expect = 0.003
 Identities = 32/131 (24%), Positives = 38/131 (29%), Gaps = 8/131 (6%)

Query: 36  PKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPP--PASNPPTSSPPPSP 93
           P   P  P   +     P               P +  P    P  P +  P    P  P
Sbjct: 751 PVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQP 810

Query: 94  PASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPP------SDPPANSPPPSNPPSN 147
            A  P    P  PV+  P    P     P P      P         P + P    P  +
Sbjct: 811 VAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLD 870

Query: 148 LPPPPPSSVEP 158
           L  PPPS VEP
Sbjct: 871 LLTPPPSEVEP 881

Length = 1355

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 4/86 (4%)

Query: 169 QNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTK 228
            +P   P+ + P ++ P     P     P P    P   + +AP  +N    + P P+  
Sbjct: 170 TDPATTPAPAAPVDTTPTNSQTPAVATAPAP-AVDPQQNAVVAPSQANVDTAATPAPAA- 227

Query: 229 RLSPPPGIPVPSTENTPGNGTNPSSP 254
                P    P   +  G  T  + P
Sbjct: 228 --PATPDGAAPLPTDQAGVSTPAADP 251

Length = 331

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 39.5 bits (91), Expect = 0.003
 Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 4/129 (3%)

Query: 111 PTRSPPPPSST-PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQ 169
           P ++   P+    PP    + P+   A     + PP+    PP  +  PP ++       
Sbjct: 222 PAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKA 281

Query: 170 NPPPPPSSSPPKN--SPPAPIAVPPSNVPPPPTQTPPTPA-SPIAPRPSNSSPNSPPPPS 226
             PP  +++PP    + PA  A  P+     P +    PA +   P  + + P     P 
Sbjct: 282 AAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPP 341

Query: 227 TKRLSPPPG 235
            K  + P G
Sbjct: 342 AKAAAAPVG 350

Length = 357

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 10/75 (13%), Positives = 20/75 (26%), Gaps = 7/75 (9%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
                G P     +P  P +     +        P +  P   ++  P  +   + P + 
Sbjct: 394 PGGGGGGPPGGGGAPGAPAAAAAPGAAAA----APAAGGPAAALAAVPDAAAAAAAPPAP 449

Query: 62  PPTSSSPPASSPPTS 76
                 P  +    S
Sbjct: 450 AAA---PQPAVRLNS 461

Length = 598

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 85  PTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNP 144
           P ++ P +  A+     +P  P +  PT   PP +S P P +   PP   PA  PPP+  
Sbjct: 124 PPAAAPAAAAAAKAEKTTPEKPKAAAPT-PEPPAASKPTPPAAAKPPEPAPAAKPPPTPV 182

Query: 145 PSNLPP 150
               P 
Sbjct: 183 ARADPR 188

Length = 418

>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 22/156 (14%), Positives = 33/156 (21%), Gaps = 21/156 (13%)

Query: 104 PPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSP 163
            PP            +    P  P  P          P++       PP  +  PP    
Sbjct: 55  YPPRETGSGGGVATSTIYTVPRPPRGPEQTLDKPDSLPASREL----PPGPTPVPPGGFR 110

Query: 164 PSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPP 223
            +  P       S+SP                       P   A       S+   +   
Sbjct: 111 GASSP--RLGADSTSPRFLYQVNF---------------PVILAPIGESNSSSEELSEEE 153

Query: 224 PPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSS 259
             S    S    +         G   + +   S  S
Sbjct: 154 EHSRPPPSESLKVKNGGKVYPKGFSKHKTHKRSEFS 189

Length = 580

>gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566)

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 25/131 (19%), Positives = 34/131 (25%), Gaps = 4/131 (3%)

Query: 29  PPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSS 88
              VS+   S     P S             S         A + P SS P  +   +SS
Sbjct: 2   AASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTSSSSS 61

Query: 89  PPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNL 148
              S    S    S      +    SP   S +   +   S  +   + S  PS      
Sbjct: 62  FGLSKQRPS----SLSRGRLSSRFVSPSRGSPSAAASLNGSLATASTSGSSSPSRSRRTT 117

Query: 149 PPPPPSSVEPP 159
                S   P 
Sbjct: 118 SSDLSSGNGPS 128

Family of related proteins that is plant specific. Length = 313

>gnl|CDD|183854 PRK13042, PRK13042, superantigen-like protein; Reviewed

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 146 SNLPPPPPSSVEPPKRSPPSVPPQNPPPPPS-SSPPKNSPPAPIAVPPSNVPPPP-TQTP 203
           +N   P  + VE P+ +PPS   + P   P+ ++PP     AP   P +  P     +TP
Sbjct: 28  ANATTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAPQQTPNATTPSSTKVETP 87

Query: 204 PTPASPIAPRPSN 216
            +P +   P   N
Sbjct: 88  QSPTTKQVPTEIN 100

Length = 291

>gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed

 Score = 39.7 bits (92), Expect = 0.003
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 4/118 (3%)

Query: 26  ISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPP 85
           ++   P S   +SS   P  +  P+ +  PS   +   T++   A +  ++   P+    
Sbjct: 301 VAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSD--- 357

Query: 86  TSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPP-SPPSDPPANSPPPS 142
            + P      ++ P    P P+S   T+     + T   N P  S P+ P +N P   
Sbjct: 358 VTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPVSP 415

Length = 421

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 39.7 bits (92), Expect = 0.003
 Identities = 19/73 (26%), Positives = 27/73 (36%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
           AP+PG P   +SS      + P  +  P V NP +      P  +P           +  
Sbjct: 180 APAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQ 239

Query: 63  PTSSSPPASSPPT 75
           PT  +P    P T
Sbjct: 240 PTPQNPAQQPPQT 252

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 39.7 bits (92), Expect = 0.003
 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 115 PPPPSSTPPPNSPPSPPSD---PPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNP 171
           P PP   P P  P +  S       ++P P+  P+   P    +V+ P + P   P Q P
Sbjct: 174 PNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQP 233

Query: 172 PPPPSSSPPKNSPPAP 187
             P     P+N    P
Sbjct: 234 VQPAQQPTPQNPAQQP 249

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 39.3 bits (91), Expect = 0.003
 Identities = 27/101 (26%), Positives = 35/101 (34%), Gaps = 11/101 (10%)

Query: 4   PSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSP------PPPPVSKPPTTSPPPSP 57
           P+ G     S +  PP  NPP  +P P +     SS        P P  +P   +P   P
Sbjct: 159 PAGGTYILASGTYIPP--NPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQP 216

Query: 58  PASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSP 98
              NP      P   P      PA  P   +P   PP +  
Sbjct: 217 TVQNPA---QQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQ 254

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 29  PPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPP 85
            P  + P  S       SK  T+ P  +  A  PP   +PPA+ P   +     +  
Sbjct: 271 QPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPP--PNPPATPPEPPARRGRGSAA 325

Length = 656

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 24/100 (24%), Positives = 33/100 (33%), Gaps = 10/100 (10%)

Query: 106 PVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPS 165
           P +     + PP  +     +  +     P+  P    PP+    P P+ VEPPK  P  
Sbjct: 57  PAATQALPTQPPEGAAEAVRAGDAAA---PSLDPATVAPPNTPVEPEPAPVEPPKPKPVE 113

Query: 166 VPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPT 205
            P   P P      P    P P        P    +  PT
Sbjct: 114 KPKPKPKPQQKVEAPPAPKPEP-------KPVVEEKAAPT 146

Length = 226

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 26/107 (24%), Positives = 31/107 (28%), Gaps = 8/107 (7%)

Query: 69  PASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPP 128
           P         P A      + PP   A +        P  +P T +PP     P P    
Sbjct: 47  PGDRDEPDMMPAA-TQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEP---- 101

Query: 129 SPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPP 175
             P +PP   P P   P   P P      PP   P   P       P
Sbjct: 102 -APVEPP--KPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAAP 145

Length = 226

>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog

 Score = 39.6 bits (92), Expect = 0.003
 Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 18/105 (17%)

Query: 86  TSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPP 145
            +  P  P  +    +S           S P    +  P+       +   NSP   +P 
Sbjct: 4   ETKEPEDPADNVNDVVS---------EASSPETDLSLSPSQSEQNIENDGQNSPETQSPL 54

Query: 146 SN---LPPPPPSSVEPP------KRSPPSVPPQNPPPPPSSSPPK 181
           +     P PP ++++ P        S     PQNP     + PPK
Sbjct: 55  TELQPSPLPPNTTLDAPVSDSQGDESSSEQQPQNPNSTEPAPPPK 99

Length = 808

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 24/82 (29%), Positives = 31/82 (37%)

Query: 42  PPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTI 101
              +       PP S P   P +SS  P++S    +  P  +     P PSP   S P  
Sbjct: 179 GGNIPGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPA 238

Query: 102 SPPPPVSNPPTRSPPPPSSTPP 123
           S P P   P  +   PP   PP
Sbjct: 239 SIPAPPIPPVIQYVAPPPVPPP 260

Length = 582

>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 23/106 (21%), Positives = 35/106 (33%), Gaps = 4/106 (3%)

Query: 20  VSNPPTISPPPPVSNP--PKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSS 77
           +S P T + P  V+ P  P   P  PP    P  +P  +  A+    +   PA     S 
Sbjct: 102 MSEPATENKPAEVTTPVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKPRAKSP 161

Query: 78  PP--PASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
            P   A+  PT +        +     P    +  P +       T
Sbjct: 162 RPAAKAAPKPTETITAKKAKKTAAAPKPTADKTATPAKKTTKKKKT 207

Length = 209

>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 4/106 (3%)

Query: 32  VSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPP--ASSPPTSSPPPASNPPTSSP 89
           +S P   + P    +       P +PPA   P  +     A++   ++P   + P   SP
Sbjct: 102 MSEPATENKPAEVTTPVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKPRAKSP 161

Query: 90  PPSPPASSPPTISPPP--PVSNPPTRSPPPPSSTPPPNSPPSPPSD 133
            P+  A+  PT +              P    +  P          
Sbjct: 162 RPAAKAAPKPTETITAKKAKKTAAAPKPTADKTATPAKKTTKKKKT 207

Length = 209

>gnl|CDD|147601 pfam05505, Ebola_NP, Ebola nucleoprotein

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 32/159 (20%), Positives = 47/159 (29%), Gaps = 10/159 (6%)

Query: 38  SSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASS 97
           S P P   +     +         PP  S  P +    S     +N        +P   +
Sbjct: 477 SKPIPEQAASTYGQTSRERQGIPEPPPGSHQPGNR--ASQDLNNNNQKQEDESTNPIGKT 534

Query: 98  PPTISPPPPV---SNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPS 154
                   PV     P  ++    SS PP  S      D P +        + + PP P 
Sbjct: 535 SLRYQELTPVQEEDEPEDQTDDDDSSLPPLES-----DDDPGSDNEQGVDLTEVAPPAPV 589

Query: 155 SVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPS 193
             +  ++     P QNP  P  S    +S        PS
Sbjct: 590 YRDEKEQDEIPHPAQNPQDPTGSIGNVDSDILRSNSKPS 628

This family consists of Ebola and Marburg virus nucleoproteins. These proteins are responsible for encapsidation of genomic RNA. It has been found that nucleoprotein DNA vaccines can offer protection from the virus. Length = 717

>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 38.9 bits (90), Expect = 0.003
 Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 374 LLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQGE--REFKA---EVEIISRIHHRHLVS 427
           LLG G FG VY  Y  D GRE+A+KQ+       E  +E  A   E++++  + H  +V 
Sbjct: 9   LLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQ 68

Query: 428 LVGYCISD--DRRLLIY-DYVPNNTL 450
             G C+ D  +++L I+ +Y+P  ++
Sbjct: 69  YYG-CLRDPEEKKLSIFVEYMPGGSI 93

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 264

>gnl|CDD|221179 pfam11711, Tim54, Inner membrane protein import complex subunit Tim54

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 21/93 (22%), Positives = 28/93 (30%), Gaps = 1/93 (1%)

Query: 26  ISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPP 85
           + PP P       + P   V   P    P  P      T+      +P   +  P   PP
Sbjct: 195 LDPPEPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKPVK-PP 253

Query: 86  TSSPPPSPPASSPPTISPPPPVSNPPTRSPPPP 118
              P  SP       + P  P    P+   P P
Sbjct: 254 VPKPYISPDEYPSAPLPPELPQLLQPSLVIPFP 286

Mitochondrial function depends on the import of hundreds of different proteins synthesised in the cytosol. Protein import is a multi-step pathway which includes the binding of precursor proteins to surface receptors, translocation of the precursor across one or both mitochondrial membranes, and folding and assembly of the imported protein inside the mitochondrion. Most precursor proteins carry amino-terminal targeting signals, called pre-sequences, and are imported into mitochondria via import complexes located in both the outer and the inner membrane (IM). The IM complex, TIM, is made up of at least two proteins which mediate translocation of proteins into the matrix by removing their signal peptide and another pair of proteins, Tim54 and Tim22, that insert the polytopic proteins, that carry internal targetting information, into the inner membrane. Length = 377

>gnl|CDD|221745 pfam12737, Mating_C, C-terminal domain of homeodomain 1

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 48/230 (20%), Positives = 70/230 (30%), Gaps = 2/230 (0%)

Query: 9   PAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSP 68
           PA +S     P  +   +SP        K      P         P   P S+  +SSS 
Sbjct: 78  PALSSERLLSPSPSVLDLSPVLASPQTGKRRRSSSPSDDEDEAERPSKRPRSDSISSSSS 137

Query: 69  PASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPP 128
           PA  P    P PA++        S      P++SPP   ++           +     P 
Sbjct: 138 PAKPPEACLPSPAASTQDELSEASAAPLPTPSLSPPHTPTDTAPSGKRKRRLSDGFQLPA 197

Query: 129 SPPSDPPANSPPPSNP-PSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAP 187
                  +     S+P P +      +  +    S PS+      PPP S    +    P
Sbjct: 198 PKRPQTSSRPQTVSDPLPLHATTDWDTWFQATVSSSPSLLLTGDIPPPVSVFAPDDST-P 256

Query: 188 IAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIP 237
           + +   N P  P   P     P     S+SS     P  T         P
Sbjct: 257 LDISLFNFPLIPLLPPEALDLPAPTAVSSSSSTFAVPALTSSSVDQSATP 306

Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is C-terminal to the homeodomain transcription factor region. Length = 418

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 3/68 (4%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKS---SPPPPPVSKPPTTSPPPSPPA 59
              P P        P   + PPT  PPPP +    S   +  P   S PP     P+P  
Sbjct: 529 KSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSP 588

Query: 60  SNPPTSSS 67
           +   +   
Sbjct: 589 TKDSSPEE 596

Length = 620

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.5 bits (93), Expect = 0.004
 Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 6/74 (8%)

Query: 39  SPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPA---SNPPTSSPPPSPPA 95
            P P      P   P        P  +++P A++   ++  PA   +  P ++   + P 
Sbjct: 391 PPSPGGGGGGP---PGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPP 447

Query: 96  SSPPTISPPPPVSN 109
           +      P   +++
Sbjct: 448 APAAAPQPAVRLNS 461

Length = 598

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.5 bits (93), Expect = 0.004
 Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 3/71 (4%)

Query: 30  PPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPAS---SPPTSSPPPASNPPT 86
           PP        PP    +     +      A+  P +  P A+    P  ++   A   P 
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPA 450

Query: 87  SSPPPSPPASS 97
           ++P P+   +S
Sbjct: 451 AAPQPAVRLNS 461

Length = 598

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.1 bits (92), Expect = 0.004
 Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 4/74 (5%)

Query: 23  PPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPAS 82
           P              +   P   + P   +   +P A  P  + +    +   ++ PPA 
Sbjct: 392 PSPGGGGGGPPGGGGAPGAPAAAAAPG--AAAAAPAAGGPAAALAAVPDAAAAAAAPPA- 448

Query: 83  NPPTSSPPPSPPAS 96
            P  +  P     S
Sbjct: 449 -PAAAPQPAVRLNS 461

Length = 598

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.1 bits (92), Expect = 0.004
 Identities = 9/67 (13%), Positives = 17/67 (25%)

Query: 102 SPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKR 161
             P      P      P +     +P +  + P A  P  +           ++   P  
Sbjct: 392 PSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPAA 451

Query: 162 SPPSVPP 168
           +P     
Sbjct: 452 APQPAVR 458

Length = 598

>gnl|CDD|183558 PRK12495, PRK12495, hypothetical protein; Provisional

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 16/93 (17%), Positives = 25/93 (26%)

Query: 7   GPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSS 66
           G  A   S      S      P        +S+PP    +     +    P  +      
Sbjct: 81  GAEATAPSDAGSQASPDDDAQPAAEAEAADQSAPPEASSTSATDEAATDPPATAAARDGP 140

Query: 67  SPPASSPPTSSPPPASNPPTSSPPPSPPASSPP 99
           +P  ++ P +     S          PP  S P
Sbjct: 141 TPDPTAQPATPDERRSPRQRPPVSGEPPTPSTP 173

Length = 226

>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 19/106 (17%), Positives = 24/106 (22%), Gaps = 5/106 (4%)

Query: 157 EPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSN 216
             P R   S          +S+      P        + P     +   P  P    P  
Sbjct: 54  LYPPRETGS-----GGGVATSTIYTVPRPPRGPEQTLDKPDSLPASRELPPGPTPVPPGG 108

Query: 217 SSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPSN 262
               S P       SP     V         G + SS E  S    
Sbjct: 109 FRGASSPRLGADSTSPRFLYQVNFPVILAPIGESNSSSEELSEEEE 154

Length = 580

>gnl|CDD|225987 COG3456, COG3456, Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 25/132 (18%), Positives = 33/132 (25%), Gaps = 2/132 (1%)

Query: 93  PPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPP 152
           P  S P T SP   VS+            P P  PP          P P+   ++     
Sbjct: 109 PDESDPDTGSPQSAVSSTDMDDDFLADIEPEPRLPPGLTDPLQLADPVPNGFSADPLSAL 168

Query: 153 PSSVEPPKRSPPSVPPQ--NPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPI 210
            S     +  P    P        P S P              +VPP     P     P 
Sbjct: 169 QSESLIAQPDPAGGAPSISRNSEAPLSDPASAGGIDTPFPDDLDVPPIAASPPGPQEGPT 228

Query: 211 APRPSNSSPNSP 222
                 +  +  
Sbjct: 229 ISASQPAQRDHA 240

Length = 430

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 68  PPASSPPTSSPPPASNPPTS-SPPPSPPASSPPTISPPPPVSNPPTRSPPPPS 119
            PA++ P  S    +N   S +  P+  A++P    PPP     P   P    
Sbjct: 271 QPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPA---PPPNPPATPPEPPARRG 320

Length = 656

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 15/55 (27%), Positives = 20/55 (36%)

Query: 110 PPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPP 164
            P  + P PS     N   S  S P A +  P+ PP+    PP       + S  
Sbjct: 271 QPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRGRGSAA 325

Length = 656

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 12/54 (22%), Positives = 23/54 (42%)

Query: 89  PPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPS 142
              + PA++ P  S     ++  + +  P ++   P  PP+PP+ PP       
Sbjct: 267 DAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRG 320

Length = 656

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 39.1 bits (91), Expect = 0.004
 Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 4/61 (6%)

Query: 49  PTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVS 108
                PPSP A+  P   +  A+    ++ P A+ P    P    P         P P S
Sbjct: 16  QPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRER----KPKPAS 71

Query: 109 N 109
            
Sbjct: 72  L 72

Length = 475

>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor

 Score = 39.3 bits (91), Expect = 0.004
 Identities = 31/104 (29%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 7   GPPAANSSSP--PPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPT 64
           G P + +S+P      SN    S  P     P +SPP   +  PP T      P+++PP 
Sbjct: 564 GNPGSTNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKIVSPSTSPPA 623

Query: 65  SSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVS 108
           S      SP T+   P S+   +S   + P SS    S    VS
Sbjct: 624 SH---LGSPSTTPSSPESSIKVASTETASPESSIKVASTESSVS 664

Length = 670

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.1 bits (91), Expect = 0.004
 Identities = 22/88 (25%), Positives = 27/88 (30%), Gaps = 8/88 (9%)

Query: 130 PPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPS----VPPQNPPPPPSSSPPKNSPP 185
           P     A +PP   P           +E   RS  S           P P   P    PP
Sbjct: 346 PSEGVAAVAPPAPAPADLTQRLNR--LEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPP 403

Query: 186 APIAVPPSNVPPPPTQTPPTPASPIAPR 213
           AP   P  +   PP   P    + +A R
Sbjct: 404 AP--EPARSAEAPPLVAPAAAPAGLALR 429

Length = 504

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 38.9 bits (90), Expect = 0.004
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V+ GY  +  +VA+K LK  G    + F  E  ++  + H  LV L      
Sbjct: 14  LGAGQFGEVWMGYYNNSTKVAVKTLK-PGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTK 72

Query: 435 DDRRLLIYDYVPNNTL 450
           ++   +I +Y+   +L
Sbjct: 73  EEPIYIITEYMAKGSL 88

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed

 Score = 39.1 bits (91), Expect = 0.004
 Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 2/110 (1%)

Query: 1   MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPP--PPPVSKPPTTSPPPSPP 58
              P+  P AA  ++     ++    +  P  ++     P   P    K        +P 
Sbjct: 291 AEEPAVAPMAAIRAAHVETAADKGERAAKPAAADKAADKPADRPDAAEKAAEKPAEAAPR 350

Query: 59  ASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVS 108
           A++ P   +   +S     P  +++    +P  +  A++P   +PP   S
Sbjct: 351 AADKPAGQAADPASSSADKPGASADAAARTPARARDAAAPDADTPPGGAS 400

Length = 413

>gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed

 Score = 39.5 bits (92), Expect = 0.004
 Identities = 13/90 (14%), Positives = 25/90 (27%), Gaps = 4/90 (4%)

Query: 38  SSPPPPPVSKPPTTSPPPSPP--ASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPA 95
           ++  P         +  P+    A       S        +  P A+     +P  S  A
Sbjct: 19  TASNPKLAQAEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETA 78

Query: 96  SSPPTISPPPPVSNPPTRSPPPP--SSTPP 123
            +    S     +    R+  P    ++ P
Sbjct: 79  ETSDPTSEATDTTTSEARTVTPAATETSKP 108

Length = 814

>gnl|CDD|226414 COG3898, COG3898, Uncharacterized membrane-bound protein [Function unknown]

 Score = 39.5 bits (92), Expect = 0.004
 Identities = 16/102 (15%), Positives = 24/102 (23%), Gaps = 10/102 (9%)

Query: 23  PPTISPPPPVSNPPKSSPPPPPVSKPPTTSPP--PSPPASNPPTSSSPPASSPPTSSPPP 80
            P       +  P   +P    + +P     P   +       T  S  A  P     P 
Sbjct: 432 HPIEDRDEAIMAPLPEAPAKSAIEEPADELEPVAEAAETEGKGTDRSARAVKPIPVIAPA 491

Query: 81  ASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTP 122
           A      +  P+     PP         +P  R         
Sbjct: 492 AYPASAKTAEPAGFFGRPP--------DDPGVRRDGAAEKRA 525

Length = 531

>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 28/87 (32%), Positives = 34/87 (39%), Gaps = 4/87 (4%)

Query: 35  PPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASS----PPTSSPPPASNPPTSSPP 90
               SP PP    PP  +PP SP AS   T  SPP       P  ++ P A        P
Sbjct: 4   ARSRSPSPPRRPSPPRPTPPRSPDASPEETPPSPPGPGAEPPPGRAAGPAAPRRRPRGCP 63

Query: 91  PSPPASSPPTISPPPPVSNPPTRSPPP 117
                SS     PP  + + P  +PPP
Sbjct: 64  AGVTFSSSAPPRPPLGLDDAPAATPPP 90

Length = 318

>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional

 Score = 39.2 bits (91), Expect = 0.004
 Identities = 18/98 (18%), Positives = 24/98 (24%)

Query: 25  TISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNP 84
           T S   P      ++      +    T P        P        +  P ++ PP    
Sbjct: 350 TASLTAPSRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQF 409

Query: 85  PTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTP 122
                  SP     P  S  P    P    P  P   P
Sbjct: 410 CGDPGLVSPYNPQSPGTSYGPEPVGPVPPQPTNPYVMP 447

Length = 663

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	479
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.93
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.85
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.84
KOG0595	429	consensus Serine/threonine-protein kinase involved	99.82
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.81
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.77
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.76
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	99.74
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.73
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.72
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.72
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.72
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.7
KOG3653	534	consensus Transforming growth factor beta/activin	99.68
KOG0575	592	consensus Polo-like serine/threonine protein kinas	99.68
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.68
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.66
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.62
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.62
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.62
PHA02988	283	hypothetical protein; Provisional	99.61
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.61
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.61
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.6
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.6
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.6
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.6
KOG0598	357	consensus Ribosomal protein S6 kinase and related	99.6
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.59
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.59
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.59
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.59
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.58
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.58
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.58
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.58
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.58
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.58
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.58
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.58
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.57
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.57
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.57
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.57
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.57
KOG0581	364	consensus Mitogen-activated protein kinase kinase	99.56
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.56
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.56
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.56
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.56
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.55
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	99.55
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.55
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.55
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.54
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.54
KOG0605	550	consensus NDR and related serine/threonine kinases	99.54
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.54
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.54
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.54
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.54
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.54
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.54
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.54
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.54
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.54
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.53
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.53
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.53
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.53
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.53
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.53
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.53
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.53
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.53
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.53
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.53
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.53
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.53
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.53
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.52
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.52
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.52
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.52
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.52
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.52
KOG0198	313	consensus MEKK and related serine/threonine protei	99.52
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.52
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.52
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.51
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.51
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.51
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.51
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	99.51
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.51
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.51
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.51
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.51
KOG0586	596	consensus Serine/threonine protein kinase [General	99.51
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.51
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.51
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.5
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.5
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.5
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.5
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.5
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.5
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.5
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.5
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.5
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.5
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.49
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.49
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.49
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.49
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.49
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.49
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.48
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.48
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.48
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.48
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.48
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.48
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.48
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.48
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	99.48
PTZ00267	478	NIMA-related protein kinase; Provisional	99.48
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.48
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.48
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.48
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.48
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.48
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.48
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.48
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.48
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.48
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.48
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.48
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.48
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.48
KOG0578	550	consensus p21-activated serine/threonine protein k	99.48
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.48
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.48
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.48
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.48
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.47
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.47
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.47
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.47
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.47
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.47
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.47
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.47
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.47
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.47
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.47
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.47
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.47
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.47
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.47
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.47
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.47
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	99.46
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.46
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.46
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.46
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.46
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.46
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.46
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.46
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.46
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.46
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.46
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.46
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.46
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.45
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.45
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.45
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.45
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.45
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.45
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.45
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.45
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.45
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.45
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.45
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.45
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.45
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.45
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.45
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.45
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.45
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.45
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.45
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.45
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.45
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.44
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.44
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.44
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.44
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.44
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.44
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.44
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.44
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.44
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.44
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.44
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.44
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.44
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.44
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.43
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.43
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.43
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.43
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.43
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.43
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.43
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.43
KOG0610	459	consensus Putative serine/threonine protein kinase	99.43
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.43
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.43
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.43
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.43
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.43
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.43
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.43
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.43
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.43
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.43
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.43
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.43
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.43
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.42
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.42
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.42
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.42
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.42
PHA03212	391	serine/threonine kinase US3; Provisional	99.42
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.42
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.42
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.42
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.42
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.42
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.42
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.41
KOG0661	538	consensus MAPK related serine/threonine protein ki	99.41
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.41
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.41
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.41
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.41
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.41
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.41
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.41
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.41
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.41
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.41
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.41
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.41
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.41
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.41
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.4
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.4
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.4
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.4
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.4
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.4
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.4
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.4
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.4
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.4
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.39
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.39
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.39
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.39
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.39
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.39
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.39
PHA03211	461	serine/threonine kinase US3; Provisional	99.38
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.38
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.38
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.38
PLN00009	294	cyclin-dependent kinase A; Provisional	99.38
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.38
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.38
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.37
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.37
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.37
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.37
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.37
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.37
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.36
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.36
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.36
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.36
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.36
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.35
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.35
PTZ00283	496	serine/threonine protein kinase; Provisional	99.35
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.35
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.34
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.34
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.34
KOG0589	426	consensus Serine/threonine protein kinase [General	99.34
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.34
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.34
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.34
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.34
PHA03207	392	serine/threonine kinase US3; Provisional	99.33
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.33
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.33
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.33
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.33
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.32
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.32
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.32
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.32
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.32
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.32
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.31
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.31
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.31
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.31
PHA03209	357	serine/threonine kinase US3; Provisional	99.31
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.3
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.3
PRK09188	365	serine/threonine protein kinase; Provisional	99.3
PTZ00284	467	protein kinase; Provisional	99.3
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.3
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.3
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.3
PTZ00036	440	glycogen synthase kinase; Provisional	99.3
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.3
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.29
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.29
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.29
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.28
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.28
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.28
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.28
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.27
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.27
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.27
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.27
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.27
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.27
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.26
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.26
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.26
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.26
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.26
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.25
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.25
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.25
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.25
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.25
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.24
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.24
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.24
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.23
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.23
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.23
KOG0584	632	consensus Serine/threonine protein kinase [General	99.23
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.22
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.21
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.21
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.2
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.2
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.2
PRK10345	210	hypothetical protein; Provisional	99.19
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.19
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.17
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.16
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.16
PHA03210	501	serine/threonine kinase US3; Provisional	99.14
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.14
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.13
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.13
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.13
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.1
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.09
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.07
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.07
PRK14879	211	serine/threonine protein kinase; Provisional	99.06
KOG1152	772	consensus Signal transduction serine/threonine kin	99.05
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.03
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.03
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.01
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.0
PRK09605	535	bifunctional UGMP family protein/serine/threonine	98.99
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	98.97
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	98.96
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	98.94
KOG1167	418	consensus Serine/threonine protein kinase of the C	98.87
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	98.87
KOG1027	903	consensus Serine/threonine protein kinase and endo	98.82
smart00090	237	RIO RIO-like kinase.	98.82
KOG0695	593	consensus Serine/threonine protein kinase [Signal	98.81
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	98.75
KOG0696	683	consensus Serine/threonine protein kinase [Signal	98.75
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	98.72
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	98.72
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	98.71
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	98.69
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	98.68
PHA02882	294	putative serine/threonine kinase; Provisional	98.68
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	98.59
COG0515	384	SPS1 Serine/threonine protein kinase [General func	98.58
PRK12274	218	serine/threonine protein kinase; Provisional	98.55
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	98.49
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	98.49
KOG1290	590	consensus Serine/threonine protein kinase [Signal	98.47
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	98.43
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	98.42
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	98.41
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	98.37
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	98.36
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	98.3
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	98.27
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	98.27
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	98.26
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	98.26
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	98.26
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	98.15
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	98.1
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	98.1
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	97.9
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	97.45
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	97.14
KOG0590	601	consensus Checkpoint kinase and related serine/thr	97.03
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	97.03
PRK10593	297	hypothetical protein; Provisional	96.86
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	96.81
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	96.78
COG0661	517	AarF Predicted unusual protein kinase [General fun	96.76
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	96.72
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	96.72
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	96.7
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	96.66
KOG1235	538	consensus Predicted unusual protein kinase [Genera	96.59
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	96.53
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	96.4
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	96.33
PF01636	239	APH: Phosphotransferase enzyme family This family	96.19
PLN02876	822	acyl-CoA dehydrogenase	96.17
PTZ00382	96	Variant-specific surface protein (VSP); Provisiona	96.13
PRK09550	401	mtnK methylthioribose kinase; Reviewed	96.07
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	96.06
KOG1243	690	consensus Protein kinase [General function predict	96.02
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	96.01
PF03109	119	ABC1: ABC1 family; InterPro: IPR004147 This entry	95.9
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	95.9
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	95.83
KOG3087	229	consensus Serine/threonine protein kinase [General	95.8
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	95.66
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	95.25
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	94.93
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	94.85
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	94.77
KOG0590	601	consensus Checkpoint kinase and related serine/thr	94.77
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	94.71
COG0478	304	RIO-like serine/threonine protein kinase fused to	94.7
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	94.68
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	94.56
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	94.53
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	94.52
PF14575	75	EphA2_TM: Ephrin type-A receptor 2 transmembrane d	94.29
PF03302	397	VSP: Giardia variant-specific surface protein; Int	94.06
PRK09902	216	hypothetical protein; Provisional	93.58
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	93.4
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	93.39
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	93.28
KOG4258	1025	consensus Insulin/growth factor receptor (contains	93.25
COG3001	286	Uncharacterized protein conserved in bacteria [Fun	93.19
PLN02756	418	S-methyl-5-thioribose kinase	92.79
KOG1266	458	consensus Protein kinase [Signal transduction mech	92.24
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	92.16
TIGR01478	295	STEVOR variant surface antigen, stevor family. Thi	91.88
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	91.79
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	91.66
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	91.66
PTZ00370	296	STEVOR; Provisional	91.55
PF08114	43	PMP1_2: ATPase proteolipid family; InterPro: IPR01	90.42
KOG0576	829	consensus Mitogen-activated protein kinase kinase	90.39
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	90.24
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	90.13
PRK05231	319	homoserine kinase; Provisional	90.03
PF05393	94	Hum_adeno_E3A: Human adenovirus early E3A glycopro	89.94
PF15345	233	TMEM51: Transmembrane protein 51	89.85
PLN00181	793	protein SPA1-RELATED; Provisional	89.26
KOG2270	520	consensus Serine/threonine protein kinase involved	89.17
KOG3021	313	consensus Predicted kinase [General function predi	89.15
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	89.07
PF05454	290	DAG1: Dystroglycan (Dystrophin-associated glycopro	88.87
PF04655	253	APH_6_hur: Aminoglycoside/hydroxyurea antibiotic r	88.57
PF05568	189	ASFV_J13L: African swine fever virus J13L protein;	87.74
PF01299	306	Lamp: Lysosome-associated membrane glycoprotein (L	87.41
PF02009	299	Rifin_STEVOR: Rifin/stevor family; InterPro: IPR00	86.43
PF06024	101	DUF912: Nucleopolyhedrovirus protein of unknown fu	86.25
cd05124	238	AFK Actin-Fragmin Kinase (AFK); catalytic domain.	86.21
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	85.53

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=1.6e-25  Score=228.54  Aligned_cols=122  Identities=51%  Similarity=0.849  Sum_probs=107.7

Q ss_pred             ccccccHHHHHHHhcCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEE
Q 011696          353 SRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYC  432 (479)
Q Consensus       353 ~~~~~~~eel~~~~~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~  432 (479)
                      ....|+|+||..+|++|...++||+|+||.||||.+.+|+.||||+++.......++|.+||++|++++|+|||+|+|||
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGyC  140 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGYC  140 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEEE
Confidence            34569999999999999999999999999999999999999999988765443256799999999999999999999999


Q ss_pred             EeCCe-EEEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHH
Q 011696          433 ISDDR-RLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLIL  474 (479)
Q Consensus       433 ~~~~~-~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~  474 (479)
                      .+.+. .+||||||.||+|.++||++....++|+.|+.|++..
T Consensus       141 ~e~~~~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~  183 (361)
T KOG1187|consen  141 LEGGEHRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGA  183 (361)
T ss_pred             ecCCceEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            99994 9999999999999999998654366888888877654

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.85  E-value=3.5e-21  Score=197.23  Aligned_cols=92  Identities=29%  Similarity=0.506  Sum_probs=83.4

Q ss_pred             hcCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcch-HhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGE-REFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~-~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      ++.+.+.++||+|.||+|.+++..++.+||||+|+..+..+. ++|.+||++|.+|+|+|||+|+|+|..++.++||+||
T Consensus       537 Rs~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~EY  616 (807)
T KOG1094|consen  537 RSRLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMITEY  616 (807)
T ss_pred             hhheehhhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHHHH
Confidence            455667789999999999999997779999999997766555 7899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcC
Q 011696          445 VPNNTLYFHLHGK  457 (479)
Q Consensus       445 ~~~GsL~~~L~~~  457 (479)
                      |+||||..||...
T Consensus       617 mEnGDLnqFl~ah  629 (807)
T KOG1094|consen  617 MENGDLNQFLSAH  629 (807)
T ss_pred             HhcCcHHHHHHhc
Confidence            9999999988654

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=1.8e-21  Score=208.18  Aligned_cols=91  Identities=27%  Similarity=0.518  Sum_probs=80.7

Q ss_pred             hcCccccccccccCccceEEEEeC------CCCEEEEEEeecCCCc-chHhHHHHHHHHHhCCCCCccceEEEEEeCCeE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRR  438 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~------~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~  438 (479)
                      +.++...+.||+|.||+||+|+..      +.+.||||.||..... ..+||.||+++|++|+|+|||+|+|+|.+++.+
T Consensus       485 r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~~P~  564 (774)
T KOG1026|consen  485 RSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCREGDPL  564 (774)
T ss_pred             hhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEccCCee
Confidence            445566788999999999999853      3457999999977766 667999999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhc
Q 011696          439 LLIYDYVPNNTLYFHLHG  456 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~  456 (479)
                      |||||||.+|||.++|..
T Consensus       565 ~MvFEYm~~GDL~eFLra  582 (774)
T KOG1026|consen  565 CMVFEYMDHGDLHEFLRA  582 (774)
T ss_pred             EEEEEecccccHHHHHHh
Confidence            999999999999999974

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.82  E-value=2.6e-20  Score=184.65  Aligned_cols=109  Identities=24%  Similarity=0.307  Sum_probs=91.2

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCC--CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      .+|...+.||+|.||+||+|++ .++..||||++....  ....+.+.+||++|++|+|+|||+|+.|+++++.+|||||
T Consensus        10 ~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lVME   89 (429)
T KOG0595|consen   10 GDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLVME   89 (429)
T ss_pred             ccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEEEE
Confidence            4566667799999999999986 457899999997553  3445568999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCcccchhHHHHHHHHHHh
Q 011696          444 YVPNNTLYFHLHGKWQLGFDIRNHNNGLLILT  475 (479)
Q Consensus       444 y~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~  475 (479)
                      ||.+|||.+||+.+..+..+..+++..-+--+
T Consensus        90 yC~gGDLs~yi~~~~~l~e~t~r~Fm~QLA~a  121 (429)
T KOG0595|consen   90 YCNGGDLSDYIRRRGRLPEATARHFMQQLASA  121 (429)
T ss_pred             eCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            99999999999998877777766655444333

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.81  E-value=4.7e-20  Score=194.42  Aligned_cols=89  Identities=29%  Similarity=0.490  Sum_probs=79.0

Q ss_pred             ccccccccccCccceEEEEeC----CCCEEEEEEeecCCCcc-hHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          369 FADQNLLGEGGFGSVYKGYLP----DGREVAIKQLKIGGGQG-EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~~----~g~~VAVK~l~~~~~~~-~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      +.++++||.|.||+||+|.++    +...||||.||....+. +++|+.|+.||+.++|+||++|.|+.......|||.|
T Consensus       631 i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPNIIrLEGVVTks~PvMIiTE  710 (996)
T KOG0196|consen  631 VKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSKPVMIITE  710 (996)
T ss_pred             eEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCcEEEEEEEEecCceeEEEhh
Confidence            355789999999999999873    34579999999877654 4589999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcC
Q 011696          444 YVPNNTLYFHLHGK  457 (479)
Q Consensus       444 y~~~GsL~~~L~~~  457 (479)
                      ||+||+|..+|+.+
T Consensus       711 yMENGsLDsFLR~~  724 (996)
T KOG0196|consen  711 YMENGSLDSFLRQN  724 (996)
T ss_pred             hhhCCcHHHHHhhc
Confidence            99999999999854

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.77  E-value=9.8e-19  Score=174.89  Aligned_cols=87  Identities=28%  Similarity=0.522  Sum_probs=75.1

Q ss_pred             hcCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHh--CCCCCccceEEEEEeCC----eEE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISR--IHHRHLVSLVGYCISDD----RRL  439 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~--l~HpNIv~LlG~~~~~~----~~~  439 (479)
                      ...+...+.||+|+||+||+|.| .|+.||||+|.   ..+++.|.+|.+|+..  |+|.||+.|+|.-..++    +++
T Consensus       210 arqI~L~e~IGkGRyGEVwrG~w-rGe~VAVKiF~---srdE~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLw  285 (513)
T KOG2052|consen  210 ARQIVLQEIIGKGRFGEVWRGRW-RGEDVAVKIFS---SRDERSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLW  285 (513)
T ss_pred             hheeEEEEEecCccccceeeccc-cCCceEEEEec---ccchhhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEEE
Confidence            45677889999999999999999 89999999985   3456779999999986  59999999999865443    568


Q ss_pred             EEEecCCCCCHHHHHhc
Q 011696          440 LIYDYVPNNTLYFHLHG  456 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~  456 (479)
                      ||.||.++|+|+|||.+
T Consensus       286 LvTdYHe~GSL~DyL~r  302 (513)
T KOG2052|consen  286 LVTDYHEHGSLYDYLNR  302 (513)
T ss_pred             EeeecccCCcHHHHHhh
Confidence            99999999999999986

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.76  E-value=1.2e-18  Score=177.47  Aligned_cols=102  Identities=28%  Similarity=0.517  Sum_probs=83.4

Q ss_pred             cccccccccCccceEEEEeCCCCE-EEEEEeecCCCcc--hHhHHHHHHHHHhCCCCCccceEEEEEeCC-eEEEEEecC
Q 011696          370 ADQNLLGEGGFGSVYKGYLPDGRE-VAIKQLKIGGGQG--EREFKAEVEIISRIHHRHLVSLVGYCISDD-RRLLIYDYV  445 (479)
Q Consensus       370 ~~~~~IG~G~fG~Vykg~~~~g~~-VAVK~l~~~~~~~--~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~-~~~LV~Ey~  445 (479)
                      ...+.||+|+||+||+|.+ +|+. ||||+++.....+  .++|.+|+.+|.+|+|+|||+|+|+|.+.. .++||||||
T Consensus        44 ~~~~~iG~G~~g~V~~~~~-~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtEy~  122 (362)
T KOG0192|consen   44 PIEEVLGSGSFGTVYKGKW-RGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVTEYM  122 (362)
T ss_pred             hhhhhcccCCceeEEEEEe-CCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEEEeC
Confidence            3446699999999999999 5666 9999997554332  458999999999999999999999999888 789999999


Q ss_pred             CCCCHHHHHhcCCcccchhHHHHHHHH
Q 011696          446 PNNTLYFHLHGKWQLGFDIRNHNNGLL  472 (479)
Q Consensus       446 ~~GsL~~~L~~~~~~~~~~~~~~~~l~  472 (479)
                      ++|+|+++||++....+++++++.+++
T Consensus       123 ~~GsL~~~l~~~~~~~l~~~~~l~~al  149 (362)
T KOG0192|consen  123 PGGSLSVLLHKKRKRKLPLKVRLRIAL  149 (362)
T ss_pred             CCCcHHHHHhhcccCCCCHHHHHHHHH
Confidence            999999999985444455555554444

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=4.1e-18  Score=169.10  Aligned_cols=113  Identities=25%  Similarity=0.384  Sum_probs=97.9

Q ss_pred             cCccccccccccCccceEEEE-eCCCCEEEEEEeecCCCc-------chHhHHHHHHHHHhCCCCCccceEEEEEeCCeE
Q 011696          367 DGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQ-------GEREFKAEVEIISRIHHRHLVSLVGYCISDDRR  438 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~-~~~g~~VAVK~l~~~~~~-------~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~  438 (479)
                      +.|...+.||+|+||.|-+|. ..+|+.||||+++.....       ...+..+|++||++|+|+|||++++++...+..
T Consensus       172 d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~ds~  251 (475)
T KOG0615|consen  172 DYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPDSS  251 (475)
T ss_pred             ceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCCce
Confidence            445667889999999999997 467999999999633211       223457999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          439 LLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      |||||||++|+|++.+-++..++.|.-+.+.+.++.+++||
T Consensus       252 YmVlE~v~GGeLfd~vv~nk~l~ed~~K~~f~Qll~avkYL  292 (475)
T KOG0615|consen  252 YMVLEYVEGGELFDKVVANKYLREDLGKLLFKQLLTAVKYL  292 (475)
T ss_pred             EEEEEEecCccHHHHHHhccccccchhHHHHHHHHHHHHHH
Confidence            99999999999999999888888999999999999999887

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.73  E-value=5.4e-18  Score=175.82  Aligned_cols=98  Identities=24%  Similarity=0.376  Sum_probs=80.5

Q ss_pred             HHHHHhcCccccccccccCccceEEEEeCC--C--CE-EEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEE
Q 011696          361 ELVKATDGFADQNLLGEGGFGSVYKGYLPD--G--RE-VAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYC  432 (479)
Q Consensus       361 el~~~~~~f~~~~~IG~G~fG~Vykg~~~~--g--~~-VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~  432 (479)
                      .++...++....++||+|.||+||+|.+..  +  .. ||||+.+...   ....++|++|+++|+.|+|+|||+|+|+|
T Consensus       151 ~Wel~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa  230 (474)
T KOG0194|consen  151 KWELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVA  230 (474)
T ss_pred             ccEEeccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence            334444556667899999999999998633  2  23 8999998522   34456899999999999999999999999


Q ss_pred             EeCCeEEEEEecCCCCCHHHHHhcCC
Q 011696          433 ISDDRRLLIYDYVPNNTLYFHLHGKW  458 (479)
Q Consensus       433 ~~~~~~~LV~Ey~~~GsL~~~L~~~~  458 (479)
                      ..++.+|||||||.||+|.+||....
T Consensus       231 ~~~~Pl~ivmEl~~gGsL~~~L~k~~  256 (474)
T KOG0194|consen  231 VLEEPLMLVMELCNGGSLDDYLKKNK  256 (474)
T ss_pred             cCCCccEEEEEecCCCcHHHHHHhCC
Confidence            99999999999999999988887543

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.72  E-value=1e-17  Score=171.57  Aligned_cols=87  Identities=29%  Similarity=0.532  Sum_probs=77.9

Q ss_pred             ccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCC
Q 011696          369 FADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNN  448 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~G  448 (479)
                      +...+.||+|.||+||.|.+++...||||.++.. ....++|++|+.||++|+|.|||+|+|+|..++.+|||+|||.+|
T Consensus       208 l~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~-~m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVtE~m~~G  286 (468)
T KOG0197|consen  208 LKLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEG-SMSPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVTEYMPKG  286 (468)
T ss_pred             HHHHHHhcCCccceEEEEEEcCCCcccceEEecc-ccChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEEEecccC
Confidence            3445779999999999999966679999999865 334568999999999999999999999999999999999999999


Q ss_pred             CHHHHHhc
Q 011696          449 TLYFHLHG  456 (479)
Q Consensus       449 sL~~~L~~  456 (479)
                      +|.+||..
T Consensus       287 sLl~yLr~  294 (468)
T KOG0197|consen  287 SLLDYLRT  294 (468)
T ss_pred             cHHHHhhh
Confidence            99999986

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.72  E-value=5.5e-17  Score=186.70  Aligned_cols=93  Identities=23%  Similarity=0.472  Sum_probs=77.5

Q ss_pred             ccHHHHHHHhcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeC
Q 011696          357 FTYEELVKATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISD  435 (479)
Q Consensus       357 ~~~eel~~~~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~  435 (479)
                      ++++++.   +.|...++||+|+||+||+|+. .+|+.||||+++....    ...+|+++|++++|+|||+++|+|.+.
T Consensus       683 ~~~~~~~---~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~----~~~~~~~~l~~l~HpnIv~~~~~~~~~  755 (968)
T PLN00113        683 ITINDIL---SSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNS----IPSSEIADMGKLQHPNIVKLIGLCRSE  755 (968)
T ss_pred             hhHHHHH---hhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCcc----ccHHHHHHHhhCCCCCcceEEEEEEcC
Confidence            3445544   4567788999999999999986 5789999999864332    223568899999999999999999999


Q ss_pred             CeEEEEEecCCCCCHHHHHhc
Q 011696          436 DRRLLIYDYVPNNTLYFHLHG  456 (479)
Q Consensus       436 ~~~~LV~Ey~~~GsL~~~L~~  456 (479)
                      +..|||||||++|+|++++++
T Consensus       756 ~~~~lv~Ey~~~g~L~~~l~~  776 (968)
T PLN00113        756 KGAYLIHEYIEGKNLSEVLRN  776 (968)
T ss_pred             CCCEEEEeCCCCCcHHHHHhc
Confidence            999999999999999999974

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.72  E-value=5.8e-18  Score=187.34  Aligned_cols=92  Identities=32%  Similarity=0.574  Sum_probs=79.8

Q ss_pred             hcCccccccccccCccceEEEEeCC--C----CEEEEEEeecCC-CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLPD--G----REVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRR  438 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~~--g----~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~  438 (479)
                      .++++..+.||+|.||+||+|++.+  |    ..||||.|++.. .+++++|++|..+|++++|+|||+|+|+|.+....
T Consensus       691 ~~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~  770 (1025)
T KOG1095|consen  691 RKNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGPP  770 (1025)
T ss_pred             hhheEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCCc
Confidence            3456677899999999999998743  3    249999997654 45567899999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcC
Q 011696          439 LLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~  457 (479)
                      +||+|||++|||..||++.
T Consensus       771 ~i~leyM~gGDL~sflr~~  789 (1025)
T KOG1095|consen  771 LILLEYMEGGDLLSFLRES  789 (1025)
T ss_pred             EEEehhcccCcHHHHHHhc
Confidence            9999999999999999864

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.70  E-value=1.3e-17  Score=171.98  Aligned_cols=98  Identities=26%  Similarity=0.399  Sum_probs=85.3

Q ss_pred             HHHHHHHhcCccccccccccCccceEEEEeCC-CCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCe
Q 011696          359 YEELVKATDGFADQNLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDR  437 (479)
Q Consensus       359 ~eel~~~~~~f~~~~~IG~G~fG~Vykg~~~~-g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~  437 (479)
                      +++++..+.++...++||-|.||+||.|+|+. ...||||.|+.+ ....+||++|+.+|++|+|+|||+|+|+|..+-.
T Consensus       259 ~DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKED-tMeveEFLkEAAvMKeikHpNLVqLLGVCT~EpP  337 (1157)
T KOG4278|consen  259 ADKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPP  337 (1157)
T ss_pred             cchhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhhc-chhHHHHHHHHHHHHhhcCccHHHHhhhhccCCC
Confidence            35566666667778899999999999999854 457999999853 4557899999999999999999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcC
Q 011696          438 RLLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       438 ~~LV~Ey~~~GsL~~~L~~~  457 (479)
                      +|||.|||.+|+|.+||++.
T Consensus       338 FYIiTEfM~yGNLLdYLRec  357 (1157)
T KOG4278|consen  338 FYIITEFMCYGNLLDYLREC  357 (1157)
T ss_pred             eEEEEecccCccHHHHHHHh
Confidence            99999999999999999863

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.68  E-value=1.9e-16  Score=159.69  Aligned_cols=86  Identities=28%  Similarity=0.461  Sum_probs=71.9

Q ss_pred             CccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHh--CCCCCccceEEEEEeCC----eEEEE
Q 011696          368 GFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISR--IHHRHLVSLVGYCISDD----RRLLI  441 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~--l~HpNIv~LlG~~~~~~----~~~LV  441 (479)
                      .+.+.++||+|+||.||||.+ +++.||||++..   ++...|++|-+|++.  |+|+||++|+|+-....    +.+||
T Consensus       211 pl~l~eli~~Grfg~V~KaqL-~~~~VAVKifp~---~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywLV  286 (534)
T KOG3653|consen  211 PLQLLELIGRGRFGCVWKAQL-DNRLVAVKIFPE---QEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWLV  286 (534)
T ss_pred             chhhHHHhhcCccceeehhhc-cCceeEEEecCH---HHHHHHHhHHHHHhccCccchhHHHhhchhccCCccccceeEE
Confidence            344457899999999999999 669999999963   334578888888775  69999999999976655    77899


Q ss_pred             EecCCCCCHHHHHhcC
Q 011696          442 YDYVPNNTLYFHLHGK  457 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~  457 (479)
                      +||.++|+|.+||...
T Consensus       287 t~fh~kGsL~dyL~~n  302 (534)
T KOG3653|consen  287 TEFHPKGSLCDYLKAN  302 (534)
T ss_pred             eeeccCCcHHHHHHhc
Confidence            9999999999999754

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=1.5e-16  Score=164.98  Aligned_cols=113  Identities=17%  Similarity=0.236  Sum_probs=95.6

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecC---CCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIG---GGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~---~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ..|..+++||+|+|+.||+++. ..|+.||+|++...   .....+.+.+||+|.++|+|+|||+|+++|++.++.|||+
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivL   97 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVL   97 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEE
Confidence            4578889999999999999986 88999999999542   2344567999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      |+|++|+|.+++..+..+.......+....+..++||
T Consensus        98 ELC~~~sL~el~Krrk~ltEpEary~l~QIv~GlkYL  134 (592)
T KOG0575|consen   98 ELCHRGSLMELLKRRKPLTEPEARYFLRQIVEGLKYL  134 (592)
T ss_pred             EecCCccHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Confidence            9999999988887666666666666666666666665

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=1.1e-16  Score=162.63  Aligned_cols=111  Identities=23%  Similarity=0.334  Sum_probs=83.9

Q ss_pred             cCccccccccccCccceEEEE-eCCCCEEEEEEeecCCCc--chHhHHHHHHHHHhCCCCCccceEEEEEeC--CeEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHHRHLVSLVGYCISD--DRRLLI  441 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~-~~~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~--~~~~LV  441 (479)
                      +.|...++||+|.||.|||++ +.+|+.||+|+++....+  .....+|||.||++|+|+|||+|.|+..+.  ..+|||
T Consensus       117 ~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYlV  196 (560)
T KOG0600|consen  117 DSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYLV  196 (560)
T ss_pred             HHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEEE
Confidence            345556889999999999997 568999999999866533  334678999999999999999999999877  578999


Q ss_pred             EecCCCCCHHHHHhc-CCcccchhHHHHHHHHHHhhcc
Q 011696          442 YDYVPNNTLYFHLHG-KWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~-~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||||++ ||.-+|+. ...|.....+++++.++..|.|
T Consensus       197 FeYMdh-DL~GLl~~p~vkft~~qIKc~mkQLl~Gl~~  233 (560)
T KOG0600|consen  197 FEYMDH-DLSGLLSSPGVKFTEPQIKCYMKQLLEGLEY  233 (560)
T ss_pred             Eecccc-hhhhhhcCCCcccChHHHHHHHHHHHHHHHH
Confidence            999997 56544443 3344555555555555555444

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.66  E-value=5e-17  Score=172.37  Aligned_cols=85  Identities=31%  Similarity=0.500  Sum_probs=72.5

Q ss_pred             ccccccccCccceEEEEe-CCCC----EEEEEEeecCC-CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          371 DQNLLGEGGFGSVYKGYL-PDGR----EVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       371 ~~~~IG~G~fG~Vykg~~-~~g~----~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      ..++||.|+||+||||.+ .+|+    .||||.+.... .+..++|++|+-+|++|+|+||+||+|+|.... ..||.+|
T Consensus       700 k~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~-~qlvtq~  778 (1177)
T KOG1025|consen  700 KDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLST-LQLVTQL  778 (1177)
T ss_pred             hhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccch-HHHHHHh
Confidence            457899999999999975 4444    58999987544 344578999999999999999999999998766 7799999


Q ss_pred             CCCCCHHHHHhc
Q 011696          445 VPNNTLYFHLHG  456 (479)
Q Consensus       445 ~~~GsL~~~L~~  456 (479)
                      |+.|.|.+|++.
T Consensus       779 mP~G~LlDyvr~  790 (1177)
T KOG1025|consen  779 MPLGCLLDYVRE  790 (1177)
T ss_pred             cccchHHHHHHH
Confidence            999999999875

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.62  E-value=3.1e-16  Score=155.14  Aligned_cols=111  Identities=24%  Similarity=0.395  Sum_probs=91.9

Q ss_pred             CccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcch---HhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGE---REFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~---~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      +|.+.+.||+|.||.|-++.- ..|+.||||.|+.....++   ..+.+||+||+.|+|+||+.++.+|++.+...||||
T Consensus        54 RyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIvivME  133 (668)
T KOG0611|consen   54 RYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIVME  133 (668)
T ss_pred             HHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEEEE
Confidence            455668899999999999974 6799999999976554444   357899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          444 YVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       444 y~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |..+|+|++|+.+++.+......|++-....++.|
T Consensus       134 YaS~GeLYDYiSer~~LsErEaRhfFRQIvSAVhY  168 (668)
T KOG0611|consen  134 YASGGELYDYISERGSLSEREARHFFRQIVSAVHY  168 (668)
T ss_pred             ecCCccHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence            99999999999988777666665655555555544

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.62  E-value=8.2e-16  Score=149.98  Aligned_cols=99  Identities=29%  Similarity=0.540  Sum_probs=78.5

Q ss_pred             ccccccccCccceEEEEeC-----CCCEEEEEEeecCCCc-chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          371 DQNLLGEGGFGSVYKGYLP-----DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       371 ~~~~IG~G~fG~Vykg~~~-----~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      ..+.||+|.||.||+|++.     .+..|+||.++..... +.++|++|+++|++++|+||++++|+|...+..+|||||
T Consensus         3 ~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~e~   82 (259)
T PF07714_consen    3 LIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVMEY   82 (259)
T ss_dssp             EEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEEE-
T ss_pred             EeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeecccccccccccccccccccccccccccccccc
Confidence            3578999999999999985     2457999999754433 367899999999999999999999999988889999999


Q ss_pred             CCCCCHHHHHhcCCcccchhHHHHH
Q 011696          445 VPNNTLYFHLHGKWQLGFDIRNHNN  469 (479)
Q Consensus       445 ~~~GsL~~~L~~~~~~~~~~~~~~~  469 (479)
                      |.+|+|.++|+++....+++..++.
T Consensus        83 ~~~g~L~~~L~~~~~~~~~~~~~~~  107 (259)
T PF07714_consen   83 CPGGSLDDYLKSKNKEPLSEQQRLS  107 (259)
T ss_dssp             -TTEBHHHHHHHTCTTTSBHHHHHH
T ss_pred             ccccccccccccccccccccccccc
Confidence            9999999999987333444444443

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.62  E-value=2.3e-16  Score=148.89  Aligned_cols=104  Identities=27%  Similarity=0.552  Sum_probs=85.7

Q ss_pred             CccccccccccCccceEEEE-eCCCCEEEEEEeecCCCcc--hHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          368 GFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQG--EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~-~~~g~~VAVK~l~~~~~~~--~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      .|...++||||.||.||+|+ ...|+.||||+++.....+  ...-+|||++|++|+|+||+.|+++|-..+.+-||+||
T Consensus         3 rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVfEf   82 (318)
T KOG0659|consen    3 RYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVFEF   82 (318)
T ss_pred             hhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEEEe
Confidence            45556889999999999998 4679999999998665433  24689999999999999999999999999999999999


Q ss_pred             CCCCCH--------------------------HHHHhcCCcccchhHHHHHHHH
Q 011696          445 VPNNTL--------------------------YFHLHGKWQLGFDIRNHNNGLL  472 (479)
Q Consensus       445 ~~~GsL--------------------------~~~L~~~~~~~~~~~~~~~~l~  472 (479)
                      |+. ||                          ..|+|.+|++|.|++-.|..+.
T Consensus        83 m~t-dLe~vIkd~~i~l~pa~iK~y~~m~LkGl~y~H~~~IlHRDlKPnNLLis  135 (318)
T KOG0659|consen   83 MPT-DLEVVIKDKNIILSPADIKSYMLMTLKGLAYCHSKWILHRDLKPNNLLIS  135 (318)
T ss_pred             ccc-cHHHHhcccccccCHHHHHHHHHHHHHHHHHHHhhhhhcccCCccceEEc
Confidence            983 23                          2467888888888887765443

>PHA02988 hypothetical protein; Provisional

Probab=99.61  E-value=3e-15  Score=148.23  Aligned_cols=94  Identities=24%  Similarity=0.341  Sum_probs=77.9

Q ss_pred             cccccccCccceEEEEeCCCCEEEEEEeecCCCcc---hHhHHHHHHHHHhCCCCCccceEEEEEe----CCeEEEEEec
Q 011696          372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQG---EREFKAEVEIISRIHHRHLVSLVGYCIS----DDRRLLIYDY  444 (479)
Q Consensus       372 ~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~---~~~f~~Ei~il~~l~HpNIv~LlG~~~~----~~~~~LV~Ey  444 (479)
                      ...||+|+||.||+|.+ +|+.||||+++......   .+.|.+|+++|++++|+|||+++|+|.+    ....+|||||
T Consensus        25 ~~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~Ey  103 (283)
T PHA02988         25 SVLIKENDQNSIYKGIF-NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILEY  103 (283)
T ss_pred             CeEEeeCCceEEEEEEE-CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEEEEe
Confidence            46799999999999998 78999999997543332   3578899999999999999999999987    3467899999


Q ss_pred             CCCCCHHHHHhcCCcccchhHH
Q 011696          445 VPNNTLYFHLHGKWQLGFDIRN  466 (479)
Q Consensus       445 ~~~GsL~~~L~~~~~~~~~~~~  466 (479)
                      |.+|+|.++|+.+..+.+..+.
T Consensus       104 ~~~g~L~~~l~~~~~~~~~~~~  125 (283)
T PHA02988        104 CTRGYLREVLDKEKDLSFKTKL  125 (283)
T ss_pred             CCCCcHHHHHhhCCCCChhHHH
Confidence            9999999999876554444333

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.61  E-value=2.7e-15  Score=146.66  Aligned_cols=110  Identities=25%  Similarity=0.326  Sum_probs=86.0

Q ss_pred             cCccccccccccCccceEEEEeC----CCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP----DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~----~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      ++|...++||+|+||.||+|++.    ++..||+|+++.... ...++|.+|+.+|++++|+||++++|+|..++..+||
T Consensus         5 ~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   84 (266)
T cd05064           5 KSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTMMIV   84 (266)
T ss_pred             HHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCcEEE
Confidence            45777899999999999999753    356899999975533 3345799999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCC-cccchhHHHHHHHHHHhh
Q 011696          442 YDYVPNNTLYFHLHGKW-QLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~~-~~~~~~~~~~~~l~~~~~  476 (479)
                      |||+.+|+|.++|..+. .+.++...++..-++.++
T Consensus        85 ~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~i~~al  120 (266)
T cd05064          85 TEYMSNGALDSFLRKHEGQLVAGQLMGMLPGLASGM  120 (266)
T ss_pred             EEeCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999987643 344444444333333333

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.61  E-value=5.3e-16  Score=159.10  Aligned_cols=112  Identities=22%  Similarity=0.332  Sum_probs=97.3

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      ++|...+.||+|.||+||||+. .+.+.||+|.+.+...  .+.+.+.+|++|+++|+|+|||.++..|+....+++|.|
T Consensus         2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVte   81 (808)
T KOG0597|consen    2 EQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVTE   81 (808)
T ss_pred             cchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEeh
Confidence            4677778999999999999985 4578899999965443  345679999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          444 YVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       444 y~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      |+.+ +|+.+|..+..+..+...++.+-++.++.||
T Consensus        82 ~a~g-~L~~il~~d~~lpEe~v~~~a~~LVsaL~yL  116 (808)
T KOG0597|consen   82 YAVG-DLFTILEQDGKLPEEQVRAIAYDLVSALYYL  116 (808)
T ss_pred             hhhh-hHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence            9998 9999999888888888888888888887775

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.60  E-value=2.8e-15  Score=154.44  Aligned_cols=112  Identities=21%  Similarity=0.245  Sum_probs=89.5

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||+||++.. .+|+.||||++....   ....++|.+|+++|++++|+|||+++++|.+.+..||||
T Consensus         1 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~   80 (377)
T cd05629           1 EDFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIM   80 (377)
T ss_pred             CCceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEE
Confidence            3577789999999999999975 578899999986432   223456899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||.+|+|+++|+....+..+....+..-++.++.|
T Consensus        81 E~~~gg~L~~~l~~~~~~~~~~~~~~~~ql~~aL~~  116 (377)
T cd05629          81 EFLPGGDLMTMLIKYDTFSEDVTRFYMAECVLAIEA  116 (377)
T ss_pred             eCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999998765555555555544444444444

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.60  E-value=2.3e-15  Score=154.12  Aligned_cols=112  Identities=21%  Similarity=0.275  Sum_probs=89.8

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||+||+++. .+|+.||||+++...   ....+.|.+|+++|.+++|+||++++++|.+++..||||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~   80 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIM   80 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEE
Confidence            3677889999999999999986 468899999997432   223356889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||.+|+|.++|+.+..+.......+..-++.++.|
T Consensus        81 E~~~~g~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~  116 (364)
T cd05599          81 EYLPGGDMMTLLMKKDTFTEEETRFYIAETILAIDS  116 (364)
T ss_pred             CCCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999876655555444444444444443

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.60  E-value=3e-15  Score=154.55  Aligned_cols=111  Identities=21%  Similarity=0.217  Sum_probs=87.4

Q ss_pred             CccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      .|...++||+|+||+||+|+. .+++.||||+++...   ....++|.+|+++|++++|+|||+++++|.+.+..+||||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E   81 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD   81 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEe
Confidence            467778999999999999985 567899999997533   2334579999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          444 YVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       444 y~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||.+|+|.++|+....+.+.....+..-++.++.|
T Consensus        82 ~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~~  116 (381)
T cd05626          82 YIPGGDMMSLLIRMEVFPEVLARFYIAELTLAIES  116 (381)
T ss_pred             cCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999998765544444444443333344433

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.60  E-value=4.5e-15  Score=150.43  Aligned_cols=112  Identities=18%  Similarity=0.155  Sum_probs=89.5

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCCCc-chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      ++|...++||+|+||+||++... +|+.||+|.++..... ..++|.+|+++|++++|+|||+++|+|.+++..+|||||
T Consensus         5 ~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   84 (333)
T cd06650           5 DDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEH   84 (333)
T ss_pred             hhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEEEec
Confidence            56777899999999999999864 5788999988754332 345799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          445 VPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       445 ~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      +.+|+|.++|+....+.+++...+...++.++.|
T Consensus        85 ~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~  118 (333)
T cd06650          85 MDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTY  118 (333)
T ss_pred             CCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999865555555544444444444443

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=99.60  E-value=1.7e-15  Score=149.17  Aligned_cols=113  Identities=27%  Similarity=0.423  Sum_probs=99.4

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC---cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||+||+.+. +.++.+|+|+|+....   .+.+...+|..||.+++|+.||+|+..|.+.+.+|||+
T Consensus        25 ~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLylVl  104 (357)
T KOG0598|consen   25 DDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLYLVL  104 (357)
T ss_pred             hheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEEEEE
Confidence            5688889999999999999975 5688999999965432   34557899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      ||+.||+|+.+|.+...+..+...-+.+-+.+++.||
T Consensus       105 d~~~GGeLf~hL~~eg~F~E~~arfYlaEi~lAL~~L  141 (357)
T KOG0598|consen  105 DYLNGGELFYHLQREGRFSEDRARFYLAEIVLALGYL  141 (357)
T ss_pred             eccCCccHHHHHHhcCCcchhHHHHHHHHHHHHHHHH
Confidence            9999999999999888888888888888888888775

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.59  E-value=4.8e-15  Score=149.94  Aligned_cols=110  Identities=24%  Similarity=0.273  Sum_probs=88.5

Q ss_pred             CccccccccccCccceEEEEeC-CCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      +|...++||+|+||.||+|+.. +|+.||||+++...   ....++|.+|+++|.+++|+||++++++|.+.+..|||||
T Consensus         2 ~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   81 (333)
T cd05600           2 DFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAME   81 (333)
T ss_pred             CcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEEe
Confidence            5777899999999999999864 58899999997432   2334579999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhc
Q 011696          444 YVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       444 y~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~  477 (479)
                      ||++|+|.++++.+..+.+.....+..-++.++.
T Consensus        82 ~~~g~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~  115 (333)
T cd05600          82 YVPGGDFRTLLNNLGVLSEDHARFYMAEMFEAVD  115 (333)
T ss_pred             CCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999987665554444444444444443

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.59  E-value=5.8e-15  Score=143.10  Aligned_cols=89  Identities=27%  Similarity=0.457  Sum_probs=78.8

Q ss_pred             CccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCC
Q 011696          368 GFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~  447 (479)
                      +|...+.||+|+||.||++.+.++..||||.++.. ....++|.+|+++|++++|+||++++|+|.+.+..+|||||+.+
T Consensus         5 ~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~~~   83 (256)
T cd05114           5 ELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEG-AMSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFMEN   83 (256)
T ss_pred             HcEEeeEecCCcCceEEEEEeccCceEEEEecccC-CccHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEEEcCCC
Confidence            46667889999999999999888889999988633 33456899999999999999999999999999999999999999


Q ss_pred             CCHHHHHhcC
Q 011696          448 NTLYFHLHGK  457 (479)
Q Consensus       448 GsL~~~L~~~  457 (479)
                      |+|.++++.+
T Consensus        84 ~~L~~~~~~~   93 (256)
T cd05114          84 GCLLNYLRQR   93 (256)
T ss_pred             CcHHHHHHhC
Confidence            9999999854

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.59  E-value=1.9e-15  Score=156.37  Aligned_cols=90  Identities=30%  Similarity=0.567  Sum_probs=75.1

Q ss_pred             hcCccccccccccCccceEEEEeCC---CC--EEEEEEeecCC-CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLPD---GR--EVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL  439 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~~---g~--~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~  439 (479)
                      ++.+...++||+|.||.||+|++.+   |+  .||||..|.+. .++.+.|+.|..+|++++|+|||+|+|+|. ++..+
T Consensus       388 Re~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~-e~P~W  466 (974)
T KOG4257|consen  388 RELITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCV-EQPMW  466 (974)
T ss_pred             hhhccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeee-cccee
Confidence            3445567899999999999998743   32  58999987644 455667999999999999999999999995 45678


Q ss_pred             EEEecCCCCCHHHHHhc
Q 011696          440 LIYDYVPNNTLYFHLHG  456 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~  456 (479)
                      ||||++..|.|..||..
T Consensus       467 ivmEL~~~GELr~yLq~  483 (974)
T KOG4257|consen  467 IVMELAPLGELREYLQQ  483 (974)
T ss_pred             EEEecccchhHHHHHHh
Confidence            99999999999999974

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.59  E-value=5e-15  Score=149.81  Aligned_cols=112  Identities=22%  Similarity=0.315  Sum_probs=89.9

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...+.||+|+||+||+|+.. +|+.||||+++...   ....++|.+|+++|++++|+||++++++|.+++..+|||
T Consensus        18 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   97 (329)
T PTZ00263         18 SDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFLL   97 (329)
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEEEE
Confidence            46777899999999999999864 58899999997432   233457999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||+.+|+|.++|..+..+..++...+..-++.++.|
T Consensus        98 e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~  133 (329)
T PTZ00263         98 EFVVGGELFTHLRKAGRFPNDVAKFYHAELVLAFEY  133 (329)
T ss_pred             cCCCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999876655555555444444444433

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.58  E-value=7.2e-15  Score=147.01  Aligned_cols=112  Identities=18%  Similarity=0.160  Sum_probs=90.5

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCc-chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      ++|...++||+|+||+||++.. .+|+.||+|.++..... ..++|.+|+++|.+++|+||++++|+|.+++..+|||||
T Consensus         1 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ey   80 (308)
T cd06615           1 DDFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICMEH   80 (308)
T ss_pred             CCceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEeec
Confidence            3577889999999999999985 45778999988754332 335699999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          445 VPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       445 ~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      +.+|+|.++++....+.+++...+..-++.++.|
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~  114 (308)
T cd06615          81 MDGGSLDQVLKKAGRIPENILGKISIAVLRGLTY  114 (308)
T ss_pred             cCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999876666666655555544444443

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.58  E-value=1.3e-15  Score=141.98  Aligned_cols=90  Identities=34%  Similarity=0.503  Sum_probs=77.9

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|..++.||+|.||.||+|+. .++..||+|++....   ..-.+++.+||+|-+.|+|+||++|+|+|.+....|||+
T Consensus        22 ~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyLil  101 (281)
T KOG0580|consen   22 DDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYLIL  101 (281)
T ss_pred             hhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccceeEEEE
Confidence            5677889999999999999986 456789999985332   233457999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhc
Q 011696          443 DYVPNNTLYFHLHG  456 (479)
Q Consensus       443 Ey~~~GsL~~~L~~  456 (479)
                      ||..+|.|+..|.+
T Consensus       102 Eya~~gel~k~L~~  115 (281)
T KOG0580|consen  102 EYAPRGELYKDLQE  115 (281)
T ss_pred             EecCCchHHHHHHh
Confidence            99999999887773

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.58  E-value=4.7e-15  Score=145.87  Aligned_cols=105  Identities=20%  Similarity=0.286  Sum_probs=82.5

Q ss_pred             cccccCccceEEEEeCC-------------------------CCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccce
Q 011696          374 LLGEGGFGSVYKGYLPD-------------------------GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSL  428 (479)
Q Consensus       374 ~IG~G~fG~Vykg~~~~-------------------------g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~L  428 (479)
                      +||+|+||.||+|.+..                         ...|+||.++.......++|.+|+++|++++|+||+++
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~   81 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFV   81 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeE
Confidence            69999999999997411                         12488998865444445679999999999999999999


Q ss_pred             EEEEEeCCeEEEEEecCCCCCHHHHHhc-CCcccchhHHHHHHHHHHhhcc
Q 011696          429 VGYCISDDRRLLIYDYVPNNTLYFHLHG-KWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       429 lG~~~~~~~~~LV~Ey~~~GsL~~~L~~-~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      +|+|.+++..+||||||.+|+|.++++. +..+.+.++.++..-+..++.|
T Consensus        82 ~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~  132 (274)
T cd05076          82 HGVCVRGSENIMVEEFVEHGPLDVCLRKEKGRVPVAWKITVAQQLASALSY  132 (274)
T ss_pred             EEEEEeCCceEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999875 3445666666555555555544

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.58  E-value=5.5e-15  Score=152.53  Aligned_cols=111  Identities=22%  Similarity=0.220  Sum_probs=88.7

Q ss_pred             CccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      .|...++||+|+||+||+|+. .+++.||||+++...   ....++|.+|+++|++++|+|||+++++|.+++..|||||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E   81 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMD   81 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEe
Confidence            467788999999999999985 567899999996432   2234578999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          444 YVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       444 y~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||.+|+|.++|+....+..++...+..-++.++.|
T Consensus        82 ~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~al~~  116 (382)
T cd05625          82 YIPGGDMMSLLIRMGIFPEDLARFYIAELTCAVES  116 (382)
T ss_pred             CCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999876555555555444444444433

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.58  E-value=8.6e-15  Score=148.11  Aligned_cols=112  Identities=17%  Similarity=0.137  Sum_probs=90.1

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      ++|...+.||+|+||.||++... +|+.||+|.++.... ...++|.+|+++|++++|+||++++|+|..++..+|||||
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   84 (331)
T cd06649           5 DDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEH   84 (331)
T ss_pred             ccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEeec
Confidence            56778889999999999999864 578899999875433 2345799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          445 VPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       445 ~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |.+|+|.++++....+.+++..++..-++.++.|
T Consensus        85 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~  118 (331)
T cd06649          85 MDGGSLDQVLKEAKRIPEEILGKVSIAVLRGLAY  118 (331)
T ss_pred             CCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999876555555555544444444443

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.58  E-value=7e-15  Score=149.63  Aligned_cols=113  Identities=21%  Similarity=0.280  Sum_probs=90.6

Q ss_pred             cCccccccccccCccceEEEEeCC--CCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPD--GREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~--g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      ++|...+.||+|+||+||+|.+.+  +..||||+++...   ....++|.+|+++|++++|+|||+++|+|.+++..+||
T Consensus        30 ~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv  109 (340)
T PTZ00426         30 EDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYLV  109 (340)
T ss_pred             hhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEEEE
Confidence            457778899999999999998533  3589999986432   23345789999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          442 YDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      ||||.+|+|.++++.+..+.+++...+..-++.++.||
T Consensus       110 ~Ey~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~aL~~L  147 (340)
T PTZ00426        110 LEFVIGGEFFTFLRRNKRFPNDVGCFYAAQIVLIFEYL  147 (340)
T ss_pred             EeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999998766666666655555555555443

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.58  E-value=9e-15  Score=145.75  Aligned_cols=91  Identities=29%  Similarity=0.479  Sum_probs=77.0

Q ss_pred             cCccccccccccCccceEEEEeCC-----------------CCEEEEEEeecCCCc-chHhHHHHHHHHHhCCCCCccce
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPD-----------------GREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSL  428 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~-----------------g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~L  428 (479)
                      ++|...++||+|+||.||++.+.+                 +..||||.++..... ...+|.+|+++|.+++|+||+++
T Consensus         5 ~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~   84 (304)
T cd05096           5 GHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRL   84 (304)
T ss_pred             hhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeEE
Confidence            456777899999999999997532                 236999998754333 34579999999999999999999


Q ss_pred             EEEEEeCCeEEEEEecCCCCCHHHHHhcC
Q 011696          429 VGYCISDDRRLLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       429 lG~~~~~~~~~LV~Ey~~~GsL~~~L~~~  457 (479)
                      +|+|.+.+..+||||||.+|+|.++|+.+
T Consensus        85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~  113 (304)
T cd05096          85 LGVCVDEDPLCMITEYMENGDLNQFLSSH  113 (304)
T ss_pred             EEEEecCCceEEEEecCCCCcHHHHHHhc
Confidence            99999999999999999999999998653

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.58  E-value=4.3e-15  Score=147.40  Aligned_cols=110  Identities=15%  Similarity=0.203  Sum_probs=87.3

Q ss_pred             CccccccccccCccceEEEEeC-CCCEEEEEEeecCCC---cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      +|...++||+|+||+||+|... +|+.||||+++....   ...+.|.+|+++|++++|+||+++++++.+++..+||||
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   81 (291)
T cd05612           2 DLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLME   81 (291)
T ss_pred             CceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEEe
Confidence            5777889999999999999864 688999999964322   234568999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhc
Q 011696          444 YVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       444 y~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~  477 (479)
                      |+.+|+|.++++.+..+.++....+..-++.++.
T Consensus        82 ~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~  115 (291)
T cd05612          82 YVPGGELFSYLRNSGRFSNSTGLFYASEIVCALE  115 (291)
T ss_pred             CCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999987655544444444333334433

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.57  E-value=6.7e-15  Score=153.10  Aligned_cols=92  Identities=28%  Similarity=0.455  Sum_probs=77.8

Q ss_pred             hcCccccccccccCccceEEEEeC------CCCEEEEEEeecCCCc-chHhHHHHHHHHHhCC-CCCccceEEEEEeCCe
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIH-HRHLVSLVGYCISDDR  437 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~------~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~-HpNIv~LlG~~~~~~~  437 (479)
                      .++|...++||+|+||.||+|+..      .+..||||+++..... ..+.|++|+++|++|+ |+|||+|+|+|.+.+.
T Consensus        36 ~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~~~  115 (400)
T cd05105          36 RDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGP  115 (400)
T ss_pred             ccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccCCc
Confidence            456777899999999999999742      1346999999754333 3457999999999996 9999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcC
Q 011696          438 RLLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       438 ~~LV~Ey~~~GsL~~~L~~~  457 (479)
                      .|||||||.+|+|.++|+.+
T Consensus       116 ~~lv~Ey~~~g~L~~~l~~~  135 (400)
T cd05105         116 IYIITEYCFYGDLVNYLHKN  135 (400)
T ss_pred             eEEEEEecCCCcHHHHHHHh
Confidence            99999999999999999753

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.57  E-value=1e-14  Score=150.09  Aligned_cols=111  Identities=20%  Similarity=0.220  Sum_probs=88.7

Q ss_pred             CccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      +|...+.||+|+||+||+++. .+|+.||||+++...   ....+.|.+|+++|++++|+||++++++|.+++..|||||
T Consensus         2 ~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E   81 (376)
T cd05598           2 MFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD   81 (376)
T ss_pred             CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEEe
Confidence            577789999999999999985 458899999986432   2234568899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          444 YVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       444 y~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||.+|+|.++|.++..+..+....+..-++.++.|
T Consensus        82 ~~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~al~~  116 (376)
T cd05598          82 YIPGGDMMSLLIRLGIFEEDLARFYIAELTCAIES  116 (376)
T ss_pred             CCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999876655555554444444444433

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.57  E-value=1.5e-14  Score=140.92  Aligned_cols=110  Identities=18%  Similarity=0.231  Sum_probs=88.7

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      ++|...+.||+|+||.||+|+. .+|+.||||+++.......+.+.+|+.+|++++|+||++++++|..++..+|||||+
T Consensus         9 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv~e~~   88 (267)
T cd06646           9 HDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWICMEYC   88 (267)
T ss_pred             hhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEEEeCC
Confidence            4577778999999999999985 568899999997655455567899999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCcccchhHHHHHHHHHHhh
Q 011696          446 PNNTLYFHLHGKWQLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       446 ~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~  476 (479)
                      .+|+|.++++.+..+.+.....+..-++.++
T Consensus        89 ~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l  119 (267)
T cd06646          89 GGGSLQDIYHVTGPLSELQIAYVCRETLQGL  119 (267)
T ss_pred             CCCcHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            9999999988655444444444433333333

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.57  E-value=1.1e-14  Score=147.00  Aligned_cols=106  Identities=22%  Similarity=0.282  Sum_probs=84.1

Q ss_pred             ccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCC
Q 011696          373 NLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNN  448 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~G  448 (479)
                      ++||+|+||.||++.. .+|+.||||+++...   .....+|.+|+++|++++|+||++++++|..++..+||||||.+|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCC
Confidence            4699999999999985 468899999997432   233456889999999999999999999999999999999999999


Q ss_pred             CHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          449 TLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       449 sL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      +|+++++.+..+.++....+..-++.++.|
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~  110 (323)
T cd05595          81 ELFFHLSRERVFTEERARFYGAEIVSALEY  110 (323)
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            999988776655555544444444444433

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.57  E-value=8.9e-15  Score=149.99  Aligned_cols=112  Identities=19%  Similarity=0.230  Sum_probs=90.5

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||+||++.. .+|+.||||+++...   ....+.+.+|+++|.+++|+||+++++++.+.+..||||
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~   80 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIM   80 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEE
Confidence            3677789999999999999975 458899999997432   222346889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||.+|+|.++|+.+..+.++....+...++.++.|
T Consensus        81 E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~  116 (363)
T cd05628          81 EFLPGGDMMTLLMKKDTLTEEETQFYIAETVLAIDS  116 (363)
T ss_pred             cCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999876665555555555555555544

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=99.56  E-value=1.1e-14  Score=143.71  Aligned_cols=109  Identities=19%  Similarity=0.231  Sum_probs=84.5

Q ss_pred             ccccccccCccceEEEEe-CCCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCC-eEEEEEecCCC
Q 011696          371 DQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDD-RRLLIYDYVPN  447 (479)
Q Consensus       371 ~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~-~~~LV~Ey~~~  447 (479)
                      ..++||+|..|+|||+.+ .+++.+|+|.+..+.. ...+++.+|++++++++|++||+++|+|..+. ...|+||||.+
T Consensus        83 ~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~mEYMDg  162 (364)
T KOG0581|consen   83 RLGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISICMEYMDG  162 (364)
T ss_pred             hhhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEeehhhcCC
Confidence            347899999999999986 4578899999965443 33468999999999999999999999999998 49999999999


Q ss_pred             CCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          448 NTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       448 GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      |+|.+++.+-.++.+.+--+....+++.|-||
T Consensus       163 GSLd~~~k~~g~i~E~~L~~ia~~VL~GL~YL  194 (364)
T KOG0581|consen  163 GSLDDILKRVGRIPEPVLGKIARAVLRGLSYL  194 (364)
T ss_pred             CCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            99988776444444444444444444444443

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.56  E-value=5.4e-15  Score=152.45  Aligned_cols=91  Identities=26%  Similarity=0.412  Sum_probs=77.6

Q ss_pred             cCccccccccccCccceEEEEe------CCCCEEEEEEeecCC-CcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL------PDGREVAIKQLKIGG-GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRR  438 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~------~~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~  438 (479)
                      ++|...++||+|+||+||+|++      .+++.||||+++... ....+.|.+|+++|..+ +|+|||+++|+|.+.+..
T Consensus        35 ~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~~~~  114 (375)
T cd05104          35 NRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTVGGPT  114 (375)
T ss_pred             HHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeeccCCcc
Confidence            4577789999999999999963      235579999997443 23345799999999999 899999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcC
Q 011696          439 LLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~  457 (479)
                      +||||||.+|+|.++|+.+
T Consensus       115 ~lv~E~~~~g~L~~~l~~~  133 (375)
T cd05104         115 LVITEYCCYGDLLNFLRRK  133 (375)
T ss_pred             eeeehhccCCcHHHHHHhc
Confidence            9999999999999999754

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.56  E-value=1e-14  Score=142.26  Aligned_cols=97  Identities=23%  Similarity=0.363  Sum_probs=84.9

Q ss_pred             HHHHhcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEE
Q 011696          362 LVKATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       362 l~~~~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~L  440 (479)
                      ++.+++++....+||+|+||.||+|.. .+++.|+||.+........++|.+|++++++++|+||++++|+|..++..+|
T Consensus         3 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l   82 (268)
T cd06624           3 YEYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFKI   82 (268)
T ss_pred             cccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEEE
Confidence            344567777778999999999999985 4577899999876666666789999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCC
Q 011696          441 IYDYVPNNTLYFHLHGKW  458 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~~  458 (479)
                      ||||+.+|+|.++++.++
T Consensus        83 v~e~~~~~~L~~~l~~~~  100 (268)
T cd06624          83 FMEQVPGGSLSALLRSKW  100 (268)
T ss_pred             EEecCCCCCHHHHHHHhc
Confidence            999999999999998654

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.56  E-value=1.4e-14  Score=146.05  Aligned_cols=106  Identities=23%  Similarity=0.283  Sum_probs=84.6

Q ss_pred             ccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCC
Q 011696          373 NLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNN  448 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~G  448 (479)
                      ++||+|+||.||++.. .+|+.||||+++...   .....++++|+++|++++|+||++++++|.+++..+|||||+.+|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~   80 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCC
Confidence            4699999999999985 568899999997432   233457899999999999999999999999999999999999999


Q ss_pred             CHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          449 TLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       449 sL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      +|+++++.+..+.++....+..-++.++.|
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~  110 (323)
T cd05571          81 ELFFHLSRERVFSEDRARFYGAEIVSALGY  110 (323)
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            999998876655555544444444444443

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.56  E-value=6.3e-15  Score=149.21  Aligned_cols=92  Identities=27%  Similarity=0.470  Sum_probs=76.0

Q ss_pred             hcCccccccccccCccceEEEEe------CCCCEEEEEEeecCCC-cchHhHHHHHHHHHhC-CCCCccceEEEEEeCC-
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL------PDGREVAIKQLKIGGG-QGEREFKAEVEIISRI-HHRHLVSLVGYCISDD-  436 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~------~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~-  436 (479)
                      .++|...++||+|+||.||+|.+      .+++.||||+++.... ...+.|.+|+++|.++ +|+|||+++|+|...+ 
T Consensus         6 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~   85 (338)
T cd05102           6 RDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPNG   85 (338)
T ss_pred             hhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCCC
Confidence            35677789999999999999974      2346799999975433 3345799999999999 8999999999998654 


Q ss_pred             eEEEEEecCCCCCHHHHHhcC
Q 011696          437 RRLLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       437 ~~~LV~Ey~~~GsL~~~L~~~  457 (479)
                      ..+||||||.+|+|.++|+.+
T Consensus        86 ~~~lv~ey~~~g~L~~~l~~~  106 (338)
T cd05102          86 PLMVIVEFCKYGNLSNFLRAK  106 (338)
T ss_pred             ceEEEEecCCCCcHHHHHHhc
Confidence            578999999999999999753

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.55  E-value=9.3e-15  Score=141.80  Aligned_cols=92  Identities=29%  Similarity=0.501  Sum_probs=82.9

Q ss_pred             cCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~  446 (479)
                      ++|...++||+|+||.||+|...+++.|++|.++.......++|.+|+++|++++|+||++++++|.+.+..+|||||+.
T Consensus         6 ~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~   85 (261)
T cd05148           6 EEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITELME   85 (261)
T ss_pred             HHHHHhhhhccCCCccEEEeEecCCCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEEEeecc
Confidence            45777789999999999999987889999999986655556789999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcCC
Q 011696          447 NNTLYFHLHGKW  458 (479)
Q Consensus       447 ~GsL~~~L~~~~  458 (479)
                      +|+|.++++...
T Consensus        86 ~~~L~~~~~~~~   97 (261)
T cd05148          86 KGSLLAFLRSPE   97 (261)
T ss_pred             cCCHHHHHhcCC
Confidence            999999998644

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=99.55  E-value=9.6e-16  Score=147.08  Aligned_cols=85  Identities=22%  Similarity=0.362  Sum_probs=71.0

Q ss_pred             CccccccccccCccceEEEEe-CCCCEEEEEEeecCCC-cchH-hHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG-QGER-EFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~-~~~~-~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      .|....++|+|+||+|||++. +.|+.||||++..... ...+ --+|||++|+.|+|+|||.|+.+|.....++|||||
T Consensus         3 kYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE~   82 (396)
T KOG0593|consen    3 KYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFEY   82 (396)
T ss_pred             HHhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEeee
Confidence            344457899999999999985 4599999999975443 2333 468999999999999999999999999999999999


Q ss_pred             CCCCCHHH
Q 011696          445 VPNNTLYF  452 (479)
Q Consensus       445 ~~~GsL~~  452 (479)
                      |++.-|.+
T Consensus        83 ~dhTvL~e   90 (396)
T KOG0593|consen   83 CDHTVLHE   90 (396)
T ss_pred             cchHHHHH
Confidence            99876643

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.55  E-value=2.9e-15  Score=156.84  Aligned_cols=87  Identities=28%  Similarity=0.487  Sum_probs=75.7

Q ss_pred             ccccccccccCccceEEEEeCC--CC--EEEEEEeecCCCc-chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          369 FADQNLLGEGGFGSVYKGYLPD--GR--EVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~~~--g~--~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      +...++||+|+||+|++|.|++  |+  .||||+|+..... ...+|++|+.+|.+|+|+|||+|+|+..+ ...+||||
T Consensus       112 i~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~-qp~mMV~E  190 (1039)
T KOG0199|consen  112 IKLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLD-QPAMMVFE  190 (1039)
T ss_pred             HHHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeecc-chhhHHhh
Confidence            3445889999999999998743  44  6899999876655 45689999999999999999999999987 77889999


Q ss_pred             cCCCCCHHHHHhc
Q 011696          444 YVPNNTLYFHLHG  456 (479)
Q Consensus       444 y~~~GsL~~~L~~  456 (479)
                      +++.|+|++.||.
T Consensus       191 LaplGSLldrLrk  203 (1039)
T KOG0199|consen  191 LAPLGSLLDRLRK  203 (1039)
T ss_pred             hcccchHHHHHhh
Confidence            9999999999986

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.55  E-value=2.4e-14  Score=144.84  Aligned_cols=106  Identities=25%  Similarity=0.301  Sum_probs=84.0

Q ss_pred             ccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCC
Q 011696          373 NLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNN  448 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~G  448 (479)
                      ++||+|+||+||++.. .+|+.||||+++...   ....++|++|+++|++++|+||+++++++.+++..+|||||+.+|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g   80 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGG   80 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCC
Confidence            4699999999999985 468899999997432   233457899999999999999999999999999999999999999


Q ss_pred             CHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          449 TLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       449 sL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      +|.++++.+..+.++....+..-++.++.|
T Consensus        81 ~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~  110 (328)
T cd05593          81 ELFFHLSRERVFSEDRTRFYGAEIVSALDY  110 (328)
T ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            999988766555554444444434444433

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.54  E-value=3.3e-14  Score=138.34  Aligned_cols=100  Identities=22%  Similarity=0.489  Sum_probs=82.2

Q ss_pred             ccccccccccCccceEEEEeCCCCEEEEEEeecCCC------cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          369 FADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGG------QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~------~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      |...++||+|+||+||+|...+|+.||||.++....      ...+.|.+|+++|++++|.||++++|+|.+.+..+|||
T Consensus         2 ~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   81 (265)
T cd06631           2 WTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIFM   81 (265)
T ss_pred             ccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEEE
Confidence            566789999999999999987899999999864321      11245899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHH
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHN  468 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~  468 (479)
                      ||+.+|+|.+++..+..+..+...++
T Consensus        82 e~~~~~~L~~~l~~~~~~~~~~~~~~  107 (265)
T cd06631          82 EFVPGGSISSILNRFGPLPEPVFCKY  107 (265)
T ss_pred             ecCCCCcHHHHHHhcCCCCHHHHHHH
Confidence            99999999999976544444443333

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.54  E-value=1.7e-14  Score=149.51  Aligned_cols=96  Identities=27%  Similarity=0.516  Sum_probs=80.6

Q ss_pred             HHHHHHhcCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcc--hHhHHHHHHHHHhCCCCCccceEEEEEeCCe
Q 011696          360 EELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQG--EREFKAEVEIISRIHHRHLVSLVGYCISDDR  437 (479)
Q Consensus       360 eel~~~~~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~--~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~  437 (479)
                      +++.+..+.+...+.||+|+||+||||+|.+  .||||+|+......  .+.|.+||.+|++-+|.||+=|.|||.....
T Consensus       385 ~~WeIp~~ev~l~~rIGsGsFGtV~Rg~whG--dVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p~~  462 (678)
T KOG0193|consen  385 EEWEIPPEEVLLGERIGSGSFGTVYRGRWHG--DVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMNPPL  462 (678)
T ss_pred             cccccCHHHhhccceeccccccceeeccccc--ceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcCCce
Confidence            4454555566677899999999999999843  49999998766433  4579999999999999999999999987776


Q ss_pred             EEEEEecCCCCCHHHHHhcCC
Q 011696          438 RLLIYDYVPNNTLYFHLHGKW  458 (479)
Q Consensus       438 ~~LV~Ey~~~GsL~~~L~~~~  458 (479)
                       .||..+|++-+||.|||...
T Consensus       463 -AIiTqwCeGsSLY~hlHv~e  482 (678)
T KOG0193|consen  463 -AIITQWCEGSSLYTHLHVQE  482 (678)
T ss_pred             -eeeehhccCchhhhhccchh
Confidence             99999999999999999644

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.54  E-value=1.5e-14  Score=148.13  Aligned_cols=113  Identities=23%  Similarity=0.272  Sum_probs=97.1

Q ss_pred             HhcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC---cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEE
Q 011696          365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       365 ~~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~L  440 (479)
                      ..++|....+||+|+||+||++.- +.|+.+|+|+|+....   ...+..+.|-+||...++++||+|+..|.+.+++||
T Consensus       139 ~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~LYL  218 (550)
T KOG0605|consen  139 SLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYLYL  218 (550)
T ss_pred             CcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCeeEE
Confidence            356788889999999999999974 5699999999975543   334568899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhc
Q 011696          441 IYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~  477 (479)
                      ||||+.|||+..+|..+..+..+|..-+..-.++++.
T Consensus       219 iMEylPGGD~mTLL~~~~~L~e~~arfYiaE~vlAI~  255 (550)
T KOG0605|consen  219 IMEYLPGGDMMTLLMRKDTLTEDWARFYIAETVLAIE  255 (550)
T ss_pred             EEEecCCccHHHHHHhcCcCchHHHHHHHHHHHHHHH
Confidence            9999999999999988888888888777776666553

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.54  E-value=2.3e-14  Score=143.78  Aligned_cols=104  Identities=17%  Similarity=0.273  Sum_probs=83.8

Q ss_pred             ccccCccceEEEEeC-CCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCCCH
Q 011696          375 LGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL  450 (479)
Q Consensus       375 IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~GsL  450 (479)
                      ||+|+||+||+++.. +++.||||+++...   ....++|.+|+++|++++|+||++++++|.+.+..+||||||.+|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L   80 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGEL   80 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcH
Confidence            799999999999864 57899999996432   33445789999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          451 YFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       451 ~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      .++++.+..+.++....+..-++.++.|
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~qi~~~l~~  108 (312)
T cd05585          81 FHHLQREGRFDLSRARFYTAELLCALEN  108 (312)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            9999876665555555544444444444

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.54  E-value=1.5e-14  Score=146.91  Aligned_cols=112  Identities=21%  Similarity=0.280  Sum_probs=91.2

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||+||+|+.. +|+.||||+++...   ....+.|.+|+++|.+++|+||++++++|.+++..+|||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (350)
T cd05573           1 DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVM   80 (350)
T ss_pred             CCceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEE
Confidence            35777899999999999999864 68899999997432   234457999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||.+|+|.++++.+..+..++...+..-++.++.|
T Consensus        81 e~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~  116 (350)
T cd05573          81 EYMPGGDLMNLLIRKDVFPEETARFYIAELVLALDS  116 (350)
T ss_pred             cCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999877555555555555545555444

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.54  E-value=2.7e-14  Score=144.57  Aligned_cols=110  Identities=21%  Similarity=0.257  Sum_probs=85.6

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...+.||+|+||+||+++. .+++.||||+++...   ....+.|.+|++++.+++|+||++++++|.+++..||||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVM   80 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEE
Confidence            3577789999999999999986 458899999996422   223456899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcC-CcccchhHHHHHHHHHHhh
Q 011696          443 DYVPNNTLYFHLHGK-WQLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~  476 (479)
                      |||.+|+|.++++.. ..+..+....+..-++.++
T Consensus        81 e~~~g~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l  115 (331)
T cd05597          81 DYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVLAI  115 (331)
T ss_pred             ecCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            999999999998752 3344444444433333333

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.54  E-value=1.5e-14  Score=148.97  Aligned_cols=112  Identities=17%  Similarity=0.210  Sum_probs=89.5

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      .++|...++||+|+||+||+++. .+|+.||||+++...   ....+.|.+|+++|++++|+||++++++|.+++..|||
T Consensus        42 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~~lv  121 (370)
T cd05596          42 AEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLYMV  121 (370)
T ss_pred             HHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEEEE
Confidence            45688889999999999999986 458899999996422   23334688999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          442 YDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||||.+|+|.+++++. .+..+|...+..-++.++.|
T Consensus       122 ~Ey~~gg~L~~~l~~~-~l~~~~~~~~~~qi~~aL~~  157 (370)
T cd05596         122 MEYMPGGDLVNLMSNY-DIPEKWARFYTAEVVLALDA  157 (370)
T ss_pred             EcCCCCCcHHHHHHhc-CCCHHHHHHHHHHHHHHHHH
Confidence            9999999999998754 34556665555545555444

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.54  E-value=2.9e-14  Score=138.06  Aligned_cols=106  Identities=22%  Similarity=0.331  Sum_probs=86.4

Q ss_pred             cCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~  446 (479)
                      ++|...++||+|+||.||+|.. +|+.||||+++.... ..++|.+|+.+|++++|.||++++|++.+.+..++||||+.
T Consensus         6 ~~~~~~~~ig~g~~g~v~~~~~-~~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~   83 (256)
T cd05039           6 KELKLGATIGKGEFGDVMLGDY-RGQKVAVKCLKDDST-AAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEYMA   83 (256)
T ss_pred             hhccceeeeecCCCceEEEEEe-cCcEEEEEEeccchh-HHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEEEecC
Confidence            4567778999999999999987 588999999975543 56789999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcCC--cccchhHHHHHHHHHH
Q 011696          447 NNTLYFHLHGKW--QLGFDIRNHNNGLLIL  474 (479)
Q Consensus       447 ~GsL~~~L~~~~--~~~~~~~~~~~~l~~~  474 (479)
                      +|+|.++++.+.  .+.++....+..-++.
T Consensus        84 ~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~  113 (256)
T cd05039          84 KGSLVDYLRSRGRAVITLAQQLGFALDVCE  113 (256)
T ss_pred             CCcHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence            999999998655  3444444444333333

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.54  E-value=2.6e-14  Score=138.79  Aligned_cols=91  Identities=26%  Similarity=0.470  Sum_probs=80.5

Q ss_pred             cCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~  446 (479)
                      ++|...++||+|+||.||+|.+.+++.||||.++... ...++|.+|+.++++++|+||+++++++.+.+..+|||||+.
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   84 (261)
T cd05072           6 ESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGT-MSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEYMA   84 (261)
T ss_pred             HHeEEeeecCCcCCceEEEEEecCCceEEEEEccCCc-hhHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEecCC
Confidence            4577789999999999999998888899999986432 335689999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcCC
Q 011696          447 NNTLYFHLHGKW  458 (479)
Q Consensus       447 ~GsL~~~L~~~~  458 (479)
                      +|+|.++++.+.
T Consensus        85 ~~~L~~~l~~~~   96 (261)
T cd05072          85 KGSLLDFLKSDE   96 (261)
T ss_pred             CCcHHHHHHHhc
Confidence            999999997643

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.54  E-value=2.6e-14  Score=146.64  Aligned_cols=114  Identities=22%  Similarity=0.290  Sum_probs=94.1

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecC----CC-cchHhHHHHHHHHHhCC-CCCccceEEEEEeCCeE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIG----GG-QGEREFKAEVEIISRIH-HRHLVSLVGYCISDDRR  438 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~----~~-~~~~~f~~Ei~il~~l~-HpNIv~LlG~~~~~~~~  438 (479)
                      .++|...+.||+|.||.||+|+. ..|+.||||.++..    .. ...+.+.+|+.+|++++ |+||++|+.++......
T Consensus        16 ~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~~~   95 (370)
T KOG0583|consen   16 IGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPTKI   95 (370)
T ss_pred             cCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCCeE
Confidence            45678889999999999999974 56899999977543    11 22345668999999998 99999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          439 LLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      ||||||+.+|+|++++..+..+..+...+++.-++.++.|+
T Consensus        96 ~ivmEy~~gGdL~~~i~~~g~l~E~~ar~~F~Qlisav~y~  136 (370)
T KOG0583|consen   96 YIVMEYCSGGDLFDYIVNKGRLKEDEARKYFRQLISAVAYC  136 (370)
T ss_pred             EEEEEecCCccHHHHHHHcCCCChHHHHHHHHHHHHHHHHH
Confidence            99999999999999998877777777777777777776653

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.54  E-value=2.9e-14  Score=140.55  Aligned_cols=110  Identities=18%  Similarity=0.234  Sum_probs=87.6

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      ++|...++||+|+||+||++.. .+|+.||+|++..... ...++|.+|++++++++|+||++++|+|...+..+|||||
T Consensus         5 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   84 (284)
T cd06620           5 EDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMCMEF   84 (284)
T ss_pred             HHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEEEec
Confidence            3455568899999999999985 4688999998875433 3346799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCcccchhHHHHHHHHHHhh
Q 011696          445 VPNNTLYFHLHGKWQLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       445 ~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~  476 (479)
                      +.+|+|.++++....+.+++..++...+..++
T Consensus        85 ~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l  116 (284)
T cd06620          85 MDCGSLDRIYKKGGPIPVEILGKIAVAVVEGL  116 (284)
T ss_pred             CCCCCHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence            99999999987655555555554444443333

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.54  E-value=4.5e-14  Score=136.31  Aligned_cols=96  Identities=25%  Similarity=0.484  Sum_probs=80.6

Q ss_pred             ccccccccccCccceEEEEeC-CCCEEEEEEeecCCC-----cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          369 FADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG-----QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~-----~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      |...++||+|+||+||+|+.. +++.|+||.+.....     +..++|.+|+++|++++|+||++++|+|.+++..+|||
T Consensus         2 ~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~   81 (258)
T cd06632           2 WRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIFL   81 (258)
T ss_pred             ccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEEE
Confidence            566788999999999999875 788999999864332     23457999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchh
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDI  464 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~  464 (479)
                      ||+.+++|.++++....+.+..
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~  103 (258)
T cd06632          82 ELVPGGSLAKLLKKYGSFPEPV  103 (258)
T ss_pred             EecCCCcHHHHHHhcCCCCHHH
Confidence            9999999999997654443333

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.53  E-value=3.3e-14  Score=138.15  Aligned_cols=91  Identities=26%  Similarity=0.473  Sum_probs=80.7

Q ss_pred             cCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~  446 (479)
                      ++|...++||+|+||.||+|.+.+++.||||.++... ...++|.+|+++|++++|+||++++++|...+..++||||+.
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   84 (261)
T cd05068           6 TSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGT-MDPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTELMK   84 (261)
T ss_pred             hheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCc-ccHHHHHHHHHHHHHCCCCCccceeEEEecCCCeeeeeeccc
Confidence            4577789999999999999998778889999987533 345689999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcCC
Q 011696          447 NNTLYFHLHGKW  458 (479)
Q Consensus       447 ~GsL~~~L~~~~  458 (479)
                      +|+|.+++....
T Consensus        85 ~~~L~~~~~~~~   96 (261)
T cd05068          85 YGSLLEYLQGGA   96 (261)
T ss_pred             CCcHHHHHhccC
Confidence            999999997654

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.53  E-value=1.6e-14  Score=150.34  Aligned_cols=91  Identities=27%  Similarity=0.429  Sum_probs=77.3

Q ss_pred             cCccccccccccCccceEEEEeC------CCCEEEEEEeecCCCc-chHhHHHHHHHHHhCC-CCCccceEEEEEeCCeE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIH-HRHLVSLVGYCISDDRR  438 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~------~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~-HpNIv~LlG~~~~~~~~  438 (479)
                      ++|...++||+|+||.||+|++.      .++.||||+++..... ..+.|++|+++|.+++ |+|||+++|+|...+..
T Consensus        37 ~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~~~~~  116 (401)
T cd05107          37 DNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACTKGGPI  116 (401)
T ss_pred             HHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEccCCCc
Confidence            45666789999999999999853      2457999999754333 2347999999999997 99999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcC
Q 011696          439 LLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~  457 (479)
                      +||||||.+|+|+++||+.
T Consensus       117 ~iv~E~~~~g~L~~~l~~~  135 (401)
T cd05107         117 YIITEYCRYGDLVDYLHRN  135 (401)
T ss_pred             EEEEeccCCCcHHHHHHhc
Confidence            9999999999999999854

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.53  E-value=3.2e-14  Score=144.04  Aligned_cols=103  Identities=20%  Similarity=0.195  Sum_probs=82.7

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||+||+++.. +++.||||.++...   ....+.|.+|+.++.+++|+||++++++|.+++..||||
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~   80 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVM   80 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            46778899999999999999864 57889999986422   223345889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcC-CcccchhHHHHH
Q 011696          443 DYVPNNTLYFHLHGK-WQLGFDIRNHNN  469 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~-~~~~~~~~~~~~  469 (479)
                      |||.+|+|.++|+.. ..+.++....+.
T Consensus        81 Ey~~gg~L~~~l~~~~~~l~~~~~~~~~  108 (331)
T cd05624          81 DYYVGGDLLTLLSKFEDRLPEDMARFYI  108 (331)
T ss_pred             eCCCCCcHHHHHHHhcCCCCHHHHHHHH
Confidence            999999999999763 334444443333

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.53  E-value=3.7e-14  Score=143.03  Aligned_cols=106  Identities=24%  Similarity=0.282  Sum_probs=84.5

Q ss_pred             ccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCC
Q 011696          373 NLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNN  448 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~G  448 (479)
                      ++||+|+||+||++.. .+|+.||||+++...   .....++.+|+++|.+++|+||++++++|..++..+|||||+.+|
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCC
Confidence            4699999999999985 568899999997432   233457889999999999999999999999999999999999999


Q ss_pred             CHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          449 TLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       449 sL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      +|.+++..+..+.++....+..-++.++.|
T Consensus        81 ~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~  110 (325)
T cd05594          81 ELFFHLSRERVFSEDRARFYGAEIVSALDY  110 (325)
T ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            999998876655555554444444444433

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.53  E-value=3.5e-14  Score=140.35  Aligned_cols=90  Identities=28%  Similarity=0.398  Sum_probs=76.9

Q ss_pred             ccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      |...++||+|+||+||+|.. .+|+.||||.++...   ......|++|+++|.+++|+||++++++|.+++..++||||
T Consensus         2 f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e~   81 (285)
T cd05631           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLTI   81 (285)
T ss_pred             ceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEEe
Confidence            56678999999999999985 578999999986433   22334688999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCC
Q 011696          445 VPNNTLYFHLHGKW  458 (479)
Q Consensus       445 ~~~GsL~~~L~~~~  458 (479)
                      |.+|+|.++++...
T Consensus        82 ~~~g~L~~~~~~~~   95 (285)
T cd05631          82 MNGGDLKFHIYNMG   95 (285)
T ss_pred             cCCCcHHHHHHhhC
Confidence            99999988876433

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.53  E-value=2.6e-14  Score=144.34  Aligned_cols=112  Identities=23%  Similarity=0.255  Sum_probs=88.4

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||+||+++. .+|+.||||+++...   ....+.|.+|+++|+.++|+||++++++|.+.+..+|||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (330)
T cd05601           1 KDFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVM   80 (330)
T ss_pred             CCceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEE
Confidence            3677889999999999999985 468899999997432   223456899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcC-CcccchhHHHHHHHHHHhhcc
Q 011696          443 DYVPNNTLYFHLHGK-WQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||.+|+|.++++.. ..+.+++...+..-++.++.|
T Consensus        81 e~~~~~~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~  117 (330)
T cd05601          81 EYQPGGDLLSLLNRYEDQFDEDMAQFYLAELVLAIHS  117 (330)
T ss_pred             CCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999765 344455544444434444433

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.53  E-value=3.2e-14  Score=138.23  Aligned_cols=89  Identities=30%  Similarity=0.480  Sum_probs=78.1

Q ss_pred             CccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCC
Q 011696          368 GFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~  447 (479)
                      +|...+.||+|+||+||+|.+.++..||||.++.. ....++|.+|+.+|.+++|+||++++|+|.+.+..+|||||+.+
T Consensus         5 ~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   83 (256)
T cd05113           5 DLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMSN   83 (256)
T ss_pred             HeEEeeEecCcccceEEEEEecCCCcEEEEEcCCC-cccHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEEcCCC
Confidence            46667889999999999999877778999998743 23456799999999999999999999999999999999999999


Q ss_pred             CCHHHHHhcC
Q 011696          448 NTLYFHLHGK  457 (479)
Q Consensus       448 GsL~~~L~~~  457 (479)
                      |+|.++++..
T Consensus        84 ~~l~~~i~~~   93 (256)
T cd05113          84 GCLLNYLREH   93 (256)
T ss_pred             CcHHHHHHhc
Confidence            9999998754

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.53  E-value=4.1e-14  Score=139.26  Aligned_cols=111  Identities=25%  Similarity=0.356  Sum_probs=84.5

Q ss_pred             cCccccccccccCccceEEEEe-----CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeC--CeEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-----PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISD--DRRL  439 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-----~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~--~~~~  439 (479)
                      ++|...++||+|+||.||+|.+     .+++.||||+++.......++|.+|+++|++++|+||++++|+|...  +..+
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~   83 (284)
T cd05081           4 RHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLR   83 (284)
T ss_pred             ccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCceE
Confidence            3566678899999999999975     24778999999766555567899999999999999999999998643  4678


Q ss_pred             EEEecCCCCCHHHHHhcCC-cccchhHHHHHHHHHHhhc
Q 011696          440 LIYDYVPNNTLYFHLHGKW-QLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~~-~~~~~~~~~~~~l~~~~~~  477 (479)
                      |||||+.+|+|++++++.+ .+.+.....+..-++.++.
T Consensus        84 lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~aL~  122 (284)
T cd05081          84 LVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKGME  122 (284)
T ss_pred             EEEEecCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999997543 2333333333333334333

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.53  E-value=4.1e-14  Score=142.20  Aligned_cols=106  Identities=23%  Similarity=0.288  Sum_probs=83.3

Q ss_pred             ccccccCccceEEEEe----CCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCC
Q 011696          373 NLLGEGGFGSVYKGYL----PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~----~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~  446 (479)
                      ++||+|+||+||+++.    .+|+.||||+++....  .+...+.+|+++|++++|+||++++++|.+++..|||||||.
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~   81 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLR   81 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCCC
Confidence            5799999999999864    3578999999974322  233468899999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          447 NNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       447 ~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      +|+|+++++.+..+.++....+..-++.++.|
T Consensus        82 ~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~  113 (318)
T cd05582          82 GGDLFTRLSKEVMFTEEDVKFYLAELALALDH  113 (318)
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999876555554444444444444443

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.53  E-value=8.9e-15  Score=142.13  Aligned_cols=104  Identities=27%  Similarity=0.447  Sum_probs=78.9

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcch--HhHHHHHHHHHhCCCCCccceEEEEEe--CCeEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGE--REFKAEVEIISRIHHRHLVSLVGYCIS--DDRRLLI  441 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~--~~f~~Ei~il~~l~HpNIv~LlG~~~~--~~~~~LV  441 (479)
                      ++|...+.|++|.||.||+|+. .+++.||+|+++.....+.  -..+|||.+|.+++|+|||.+..+...  .+..|||
T Consensus        76 ~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~iy~V  155 (419)
T KOG0663|consen   76 EEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKIYIV  155 (419)
T ss_pred             HHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccccceeeee
Confidence            3455568899999999999985 4678999999985442221  136899999999999999999998875  4568999


Q ss_pred             EecCCCCCHHH--------------------------HHhcCCcccchhHHHHHHH
Q 011696          442 YDYVPNNTLYF--------------------------HLHGKWQLGFDIRNHNNGL  471 (479)
Q Consensus       442 ~Ey~~~GsL~~--------------------------~L~~~~~~~~~~~~~~~~l  471 (479)
                      ||||++ ||..                          |||+.|.+|.|.+.-|..+
T Consensus       156 Me~~Eh-DLksl~d~m~q~F~~~evK~L~~QlL~glk~lH~~wilHRDLK~SNLLm  210 (419)
T KOG0663|consen  156 MEYVEH-DLKSLMETMKQPFLPGEVKTLMLQLLRGLKHLHDNWILHRDLKTSNLLL  210 (419)
T ss_pred             HHHHHh-hHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhhceeEecccchhheee
Confidence            999987 4533                          5666666666666555443

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.53  E-value=3.8e-14  Score=138.06  Aligned_cols=102  Identities=21%  Similarity=0.299  Sum_probs=84.5

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      ++|...++||+|+||.||+|+. .+++.||||.++.......+.|.+|+.+|++++|+||+++++++...+..++||||+
T Consensus         9 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~e~~   88 (267)
T cd06645           9 EDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICMEFC   88 (267)
T ss_pred             HHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEEecc
Confidence            3556668899999999999985 468899999997655555567899999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCcccchhHHHH
Q 011696          446 PNNTLYFHLHGKWQLGFDIRNHN  468 (479)
Q Consensus       446 ~~GsL~~~L~~~~~~~~~~~~~~  468 (479)
                      ++|+|.++++.+..+.++....+
T Consensus        89 ~~~~L~~~~~~~~~~~~~~~~~~  111 (267)
T cd06645          89 GGGSLQDIYHVTGPLSESQIAYV  111 (267)
T ss_pred             CCCcHHHHHHhcCCCCHHHHHHH
Confidence            99999999876554444443333

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.53  E-value=4.3e-14  Score=142.54  Aligned_cols=104  Identities=25%  Similarity=0.390  Sum_probs=81.1

Q ss_pred             ccccccCccceEEEEe----CCCCEEEEEEeecCC----CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          373 NLLGEGGFGSVYKGYL----PDGREVAIKQLKIGG----GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~----~~g~~VAVK~l~~~~----~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      ++||+|+||.||+++.    .+++.||||+++...    ......+.+|+++|++++|+||++++++|..++..||||||
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~   81 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEY   81 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeC
Confidence            5799999999999975    357889999997432    22334688999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCcccchhHHHHHHHHHHhh
Q 011696          445 VPNNTLYFHLHGKWQLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       445 ~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~  476 (479)
                      +.+|+|+++++.+..+..+....+..-++.++
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l  113 (323)
T cd05584          82 LSGGELFMHLEREGIFMEDTACFYLSEISLAL  113 (323)
T ss_pred             CCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            99999999987665544444433333333333

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.53  E-value=2.5e-14  Score=146.05  Aligned_cols=82  Identities=23%  Similarity=0.329  Sum_probs=71.1

Q ss_pred             ccccccccCccceEEEEe-CCCCEEEEEEeecCCCc-chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCC
Q 011696          371 DQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNN  448 (479)
Q Consensus       371 ~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~G  448 (479)
                      ..++||+|+||+||+|+. .+|+.||||+++..... ..++|.+|+++|++++|+||++++++|.+++..+||||||.+|
T Consensus        78 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~  157 (353)
T PLN00034         78 RVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLEFMDGG  157 (353)
T ss_pred             hhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEEEecCCCC
Confidence            347899999999999985 46899999999654332 3457999999999999999999999999999999999999999


Q ss_pred             CHHH
Q 011696          449 TLYF  452 (479)
Q Consensus       449 sL~~  452 (479)
                      +|.+
T Consensus       158 ~L~~  161 (353)
T PLN00034        158 SLEG  161 (353)
T ss_pred             cccc
Confidence            9854

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.53  E-value=2.9e-14  Score=146.85  Aligned_cols=113  Identities=16%  Similarity=0.196  Sum_probs=89.0

Q ss_pred             HhcCccccccccccCccceEEEEeC-CCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEE
Q 011696          365 ATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       365 ~~~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~L  440 (479)
                      ..++|...++||+|+||.||+++.. +++.||+|.++...   ....+.|.+|+++++.++|+||+++++++.+++..||
T Consensus        41 ~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~l  120 (370)
T cd05621          41 KAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDKYLYM  120 (370)
T ss_pred             CHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEE
Confidence            3467888899999999999999864 57889999986422   2234468899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          441 IYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||||.+|+|.+++++. .+..++...+..-++.++.|
T Consensus       121 v~Ey~~gg~L~~~l~~~-~~~~~~~~~~~~qil~aL~~  157 (370)
T cd05621         121 VMEYMPGGDLVNLMSNY-DVPEKWAKFYTAEVVLALDA  157 (370)
T ss_pred             EEcCCCCCcHHHHHHhc-CCCHHHHHHHHHHHHHHHHH
Confidence            99999999999988754 34455555554444444444

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.52  E-value=5.4e-14  Score=136.40  Aligned_cols=92  Identities=26%  Similarity=0.473  Sum_probs=81.5

Q ss_pred             hcCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      .++|...++||+|+||.||+|.+.+++.||||.++... ...++|.+|+++|++++|+||+++++++.+++..++||||+
T Consensus         5 ~~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~   83 (261)
T cd05034           5 RESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGT-MSPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTEYM   83 (261)
T ss_pred             hhheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCc-cCHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEEEecc
Confidence            35677889999999999999998788899999987433 34568999999999999999999999999989999999999


Q ss_pred             CCCCHHHHHhcCC
Q 011696          446 PNNTLYFHLHGKW  458 (479)
Q Consensus       446 ~~GsL~~~L~~~~  458 (479)
                      .+|+|.++++...
T Consensus        84 ~~~~L~~~i~~~~   96 (261)
T cd05034          84 SKGSLLDFLKSGE   96 (261)
T ss_pred             CCCCHHHHHhccc
Confidence            9999999998654

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.52  E-value=3.9e-14  Score=140.06  Aligned_cols=90  Identities=28%  Similarity=0.403  Sum_probs=76.8

Q ss_pred             CccccccccccCccceEEEEe-CCCCEEEEEEeecCCC---cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      +|...++||+|+||+||++.. .+++.||||+++....   .....|.+|+++|++++|+||++++++|.+++..+||||
T Consensus         1 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (285)
T cd05605           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEe
Confidence            366678999999999999985 4688999999964332   223468899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcC
Q 011696          444 YVPNNTLYFHLHGK  457 (479)
Q Consensus       444 y~~~GsL~~~L~~~  457 (479)
                      ||.+|+|.++++..
T Consensus        81 ~~~~~~L~~~~~~~   94 (285)
T cd05605          81 LMNGGDLKFHIYNM   94 (285)
T ss_pred             ccCCCcHHHHHHhc
Confidence            99999999888754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.52  E-value=4e-14  Score=138.57  Aligned_cols=92  Identities=23%  Similarity=0.450  Sum_probs=78.4

Q ss_pred             cCccccccccccCccceEEEEeC------CCCEEEEEEeecCCCc-chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL  439 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~------~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~  439 (479)
                      ++|...++||+|+||+||+|+..      +.+.|+||.+...... ..++|.+|+++|++++|+||++++++|.+.+..+
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   84 (275)
T cd05046           5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAEPHY   84 (275)
T ss_pred             HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCCCcce
Confidence            45777789999999999999853      2457999988654433 3467999999999999999999999999989999


Q ss_pred             EEEecCCCCCHHHHHhcCC
Q 011696          440 LIYDYVPNNTLYFHLHGKW  458 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~~  458 (479)
                      |||||+.+|+|.++++...
T Consensus        85 lv~e~~~~~~L~~~i~~~~  103 (275)
T cd05046          85 MILEYTDLGDLKQFLRATK  103 (275)
T ss_pred             EEEEecCCCcHHHHHHhcc
Confidence            9999999999999998654

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.52  E-value=5.6e-14  Score=136.96  Aligned_cols=91  Identities=27%  Similarity=0.464  Sum_probs=78.2

Q ss_pred             cCccccccccccCccceEEEEeCC----CCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPD----GREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~----g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      ++|...++||+|+||+||+|.+..    ...||||.++.... ...++|.+|+.+|++++|+||++++|++.+.+..+||
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv   83 (266)
T cd05033           4 SYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMII   83 (266)
T ss_pred             HHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCceEEE
Confidence            467788999999999999998642    35799999875433 3345799999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcC
Q 011696          442 YDYVPNNTLYFHLHGK  457 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~  457 (479)
                      |||+.+|+|.++++..
T Consensus        84 ~e~~~~~~L~~~~~~~   99 (266)
T cd05033          84 TEYMENGSLDKFLREN   99 (266)
T ss_pred             EEcCCCCCHHHHHHhc
Confidence            9999999999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.52  E-value=4.2e-14  Score=144.80  Aligned_cols=112  Identities=20%  Similarity=0.257  Sum_probs=88.7

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||+||+++. .+|+.||||+++...   ....+.|.+|+++|.+++|+||+++++++.+++..+|||
T Consensus         1 ~~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~   80 (360)
T cd05627           1 DDFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIM   80 (360)
T ss_pred             CCceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            3577789999999999999986 458899999997432   233456889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||.+|+|.++|+.+..+..+....+..-++.++.|
T Consensus        81 E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~~L~~  116 (360)
T cd05627          81 EFLPGGDMMTLLMKKDTLSEEATQFYIAETVLAIDA  116 (360)
T ss_pred             eCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999876655555444444444444433

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.52  E-value=4.3e-14  Score=137.55  Aligned_cols=111  Identities=17%  Similarity=0.284  Sum_probs=87.9

Q ss_pred             CccccccccccCccceEEEEe-CCCCEEEEEEeecCCC------cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEE
Q 011696          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG------QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~------~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~L  440 (479)
                      +|...++||+|+||.||+|.. .+++.||||.++....      ...++|.+|+++|++++|+||++++|+|.+.+..++
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   80 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNL   80 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEE
Confidence            466778999999999999974 5788999999864331      123579999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          441 IYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||||+.+|+|.++|.+...+.+++..++..-++.++.+
T Consensus        81 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~ql~~al~~  118 (268)
T cd06630          81 FVEWMAGGSVSHLLSKYGAFKEAVIINYTEQLLRGLSY  118 (268)
T ss_pred             EEeccCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999765555555544444444444433

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.52  E-value=3e-14  Score=141.61  Aligned_cols=113  Identities=22%  Similarity=0.374  Sum_probs=93.7

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCC--eEEEEEe
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDD--RRLLIYD  443 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~--~~~LV~E  443 (479)
                      .++...++||+|.||.||++... +|+..|||.+...+....+.+.+|+++|++|+|+|||+.+|.....+  .++|+||
T Consensus        17 ~~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~mE   96 (313)
T KOG0198|consen   17 SNWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFME   96 (313)
T ss_pred             chhhhhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeeee
Confidence            34556789999999999999864 48999999997664444667999999999999999999999855555  5789999


Q ss_pred             cCCCCCHHHHHhcCC-cccchhHHHHHHHHHHhhccC
Q 011696          444 YVPNNTLYFHLHGKW-QLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       444 y~~~GsL~~~L~~~~-~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      |+.+|+|.+++.+.. .+..+...++....+..|.||
T Consensus        97 y~~~GsL~~~~~~~g~~l~E~~v~~ytr~iL~GL~yl  133 (313)
T KOG0198|consen   97 YAPGGSLSDLIKRYGGKLPEPLVRRYTRQILEGLAYL  133 (313)
T ss_pred             ccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999988654 677888888887777777765

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.52  E-value=4.6e-14  Score=138.64  Aligned_cols=112  Identities=20%  Similarity=0.244  Sum_probs=89.3

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      ++|...+.||+|+||+||+|.. .+++.||+|.++.......++|.+|+++|++|+|+||++++|+|..++..+|||||+
T Consensus         5 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   84 (280)
T cd06611           5 DIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILIEFC   84 (280)
T ss_pred             hHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEeecc
Confidence            4566678899999999999986 457899999998665555678999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcC-CcccchhHHHHHHHHHHhhcc
Q 011696          446 PNNTLYFHLHGK-WQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       446 ~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      .+|+|.+++... ..+.++...++..-+..++.|
T Consensus        85 ~~~~L~~~~~~~~~~l~~~~~~~~~~ql~~~l~~  118 (280)
T cd06611          85 DGGALDSIMLELERGLTEPQIRYVCRQMLEALNF  118 (280)
T ss_pred             CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999988753 234444444444444444433

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.52  E-value=4.3e-14  Score=138.58  Aligned_cols=91  Identities=27%  Similarity=0.555  Sum_probs=78.6

Q ss_pred             cCccccccccccCccceEEEEeCC------CCEEEEEEeecCCCc-chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPD------GREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL  439 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~------g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~  439 (479)
                      ++|...++||+|+||.||+|...+      ++.||||.++..... ..++|.+|+++|.+++|+||++++++|...+..+
T Consensus         5 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   84 (280)
T cd05049           5 DTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEGDPPI   84 (280)
T ss_pred             HHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecCCCeE
Confidence            346667889999999999998633      468999999765444 3468999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcC
Q 011696          440 LIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~  457 (479)
                      |||||+.+|+|.++|+..
T Consensus        85 lv~e~~~~~~L~~~i~~~  102 (280)
T cd05049          85 MVFEYMEHGDLNKFLRSH  102 (280)
T ss_pred             EEEecCCCCCHHHHHHhc
Confidence            999999999999999754

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.51  E-value=7.9e-14  Score=134.36  Aligned_cols=86  Identities=33%  Similarity=0.549  Sum_probs=75.5

Q ss_pred             ccccccCccceEEEEeCCCCEEEEEEeecCCCcc-hHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCCCHH
Q 011696          373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQG-EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLY  451 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~-~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~GsL~  451 (479)
                      ++||+|+||.||+|.+.+++.||+|.++.....+ ..+|.+|+++|++++|+||++++++|...+..+|||||+.+|+|.
T Consensus         1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~   80 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFL   80 (250)
T ss_pred             CccCCCCCceEEEEEecCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCcHH
Confidence            4699999999999998888999999987544332 346999999999999999999999999999999999999999999


Q ss_pred             HHHhcCC
Q 011696          452 FHLHGKW  458 (479)
Q Consensus       452 ~~L~~~~  458 (479)
                      +++..+.
T Consensus        81 ~~~~~~~   87 (250)
T cd05085          81 SFLRKKK   87 (250)
T ss_pred             HHHHhcC
Confidence            9987543

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.51  E-value=4.9e-14  Score=136.28  Aligned_cols=104  Identities=26%  Similarity=0.435  Sum_probs=80.7

Q ss_pred             ccccccCccceEEEEeCCCC-----------EEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEE
Q 011696          373 NLLGEGGFGSVYKGYLPDGR-----------EVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~~g~-----------~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      ++||+|+||.||+|++.+..           .|++|.++..... .++|.+|+++|++++|+||++++|+|.. +..+||
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~-~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~lv   78 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRD-SLAFFETASLMSQLSHKHLVKLYGVCVR-DENIMV   78 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhh-HHHHHHHHHHHHcCCCcchhheeeEEec-CCcEEE
Confidence            46999999999999875432           4778877644333 6789999999999999999999999988 778999


Q ss_pred             EecCCCCCHHHHHhcCC-cccchhHHHHHHHHHHhhcc
Q 011696          442 YDYVPNNTLYFHLHGKW-QLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~~-~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||+.+|+|.++++... .+.+.++..+..-+..++.|
T Consensus        79 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~  116 (259)
T cd05037          79 EEYVKFGPLDVFLHREKNNVSLHWKLDVAKQLASALHY  116 (259)
T ss_pred             EEcCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999998655 45555555544444444443

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.51  E-value=6.9e-14  Score=136.68  Aligned_cols=85  Identities=25%  Similarity=0.434  Sum_probs=72.8

Q ss_pred             ccccccCccceEEEEeCC---CCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCC
Q 011696          373 NLLGEGGFGSVYKGYLPD---GREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNN  448 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~~---g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~G  448 (479)
                      +.||+|+||.||+|.+.+   +..+|+|.++.... ....+|.+|+.+|++++|+||++++|+|.+.+..+||||||.+|
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g   80 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPLG   80 (269)
T ss_pred             CcccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCCC
Confidence            358999999999998643   35799999875443 33457999999999999999999999999999999999999999


Q ss_pred             CHHHHHhcC
Q 011696          449 TLYFHLHGK  457 (479)
Q Consensus       449 sL~~~L~~~  457 (479)
                      +|.++|+..
T Consensus        81 ~L~~~l~~~   89 (269)
T cd05087          81 DLKGYLRSC   89 (269)
T ss_pred             cHHHHHHHh
Confidence            999999753

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.51  E-value=6.5e-14  Score=141.76  Aligned_cols=111  Identities=18%  Similarity=0.218  Sum_probs=86.0

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||+||++++. +++.||||+++...   ....+.|.+|+.++.+++|+||++++++|.+.+..+|||
T Consensus         1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (332)
T cd05623           1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVM   80 (332)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEE
Confidence            35777899999999999999864 46789999986422   223345899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcC-CcccchhHHHHHHHHHHhhc
Q 011696          443 DYVPNNTLYFHLHGK-WQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~~  477 (479)
                      ||+.+|+|.++|+.. ..+.++....+..-++.++.
T Consensus        81 ey~~~g~L~~~l~~~~~~l~~~~~~~~~~qi~~al~  116 (332)
T cd05623          81 DYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVIAID  116 (332)
T ss_pred             eccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999763 34444444444433344433

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=99.51  E-value=3.1e-14  Score=136.44  Aligned_cols=113  Identities=21%  Similarity=0.273  Sum_probs=97.9

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcc---hHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQG---EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~---~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...+.||.|+||+|.+.+. .+|..+|+|+|+......   .+...+|.++|+.++|++|++|.|-|.+.+.+||||
T Consensus        44 ~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~lymvm  123 (355)
T KOG0616|consen   44 QDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLYMVM  123 (355)
T ss_pred             hhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEEEEE
Confidence            3466678899999999999975 468889999997655433   345889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      ||+.+|.|+.||+..+++......-+.+-+++++.||
T Consensus       124 eyv~GGElFS~Lrk~~rF~e~~arFYAAeivlAleyl  160 (355)
T KOG0616|consen  124 EYVPGGELFSYLRKSGRFSEPHARFYAAEIVLALEYL  160 (355)
T ss_pred             eccCCccHHHHHHhcCCCCchhHHHHHHHHHHHHHHH
Confidence            9999999999999988888888888888888888875

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.51  E-value=8.1e-14  Score=140.94  Aligned_cols=106  Identities=19%  Similarity=0.277  Sum_probs=83.5

Q ss_pred             ccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEEEEecCCC
Q 011696          373 NLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYDYVPN  447 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~LV~Ey~~~  447 (479)
                      ++||+|+||+||+++. .+++.||||+++...   ....+.|.+|+.++.++ +|+||++++++|.+.+..+||||||.+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~   80 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSG   80 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCC
Confidence            4699999999999986 468899999997532   22335688999999998 799999999999999999999999999


Q ss_pred             CCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          448 NTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       448 GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |+|.+++..+..+.++....+..-++.++.|
T Consensus        81 g~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~  111 (329)
T cd05588          81 GDLMFHMQRQRKLPEEHARFYSAEISLALNF  111 (329)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            9999988766555555555444444444443

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.51  E-value=2.5e-14  Score=147.48  Aligned_cols=91  Identities=27%  Similarity=0.448  Sum_probs=77.3

Q ss_pred             hcCccccccccccCccceEEEEe------CCCCEEEEEEeecCCCc-chHhHHHHHHHHHhC-CCCCccceEEEEEeCCe
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL------PDGREVAIKQLKIGGGQ-GEREFKAEVEIISRI-HHRHLVSLVGYCISDDR  437 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~------~~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~  437 (479)
                      .++|...++||+|+||.||+|+.      .+++.||||+++..... ..+.|.+|+++|+++ +|+|||+++|+|.+.+.
T Consensus        37 ~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~~~  116 (374)
T cd05106          37 RDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTHGGP  116 (374)
T ss_pred             HHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecCCCC
Confidence            34677789999999999999873      23457999999754433 345689999999999 89999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhc
Q 011696          438 RLLIYDYVPNNTLYFHLHG  456 (479)
Q Consensus       438 ~~LV~Ey~~~GsL~~~L~~  456 (479)
                      .+||||||.+|+|.++|+.
T Consensus       117 ~~lv~ey~~~g~L~~~l~~  135 (374)
T cd05106         117 VLVITEYCCYGDLLNFLRK  135 (374)
T ss_pred             eEEeHhhccCCcHHHHHHh
Confidence            9999999999999999864

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.51  E-value=6.5e-14  Score=136.82  Aligned_cols=108  Identities=18%  Similarity=0.384  Sum_probs=84.2

Q ss_pred             ccccccccccCccceEEEEe-CCCCEEEEEEeecCCC---c-------chHhHHHHHHHHHhCCCCCccceEEEEEeCCe
Q 011696          369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---Q-------GEREFKAEVEIISRIHHRHLVSLVGYCISDDR  437 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~---~-------~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~  437 (479)
                      |...+.||+|+||.||+|.. .+|+.||||.++....   .       ..+.|.+|+++|++++|+||++++|+|...+.
T Consensus         3 ~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   82 (272)
T cd06629           3 WVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEEY   82 (272)
T ss_pred             eeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCCc
Confidence            55678999999999999975 4688999998863211   1       12358899999999999999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhh
Q 011696          438 RLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       438 ~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~  476 (479)
                      .+|||||+.+|+|.+++++...+.+++...+..-++.++
T Consensus        83 ~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l  121 (272)
T cd06629          83 LSIFLEYVPGGSIGSCLRTYGRFEEQLVRFFTEQVLEGL  121 (272)
T ss_pred             eEEEEecCCCCcHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence            999999999999999998765555554444433333333

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.51  E-value=1.1e-13  Score=134.17  Aligned_cols=108  Identities=21%  Similarity=0.337  Sum_probs=87.3

Q ss_pred             CccccccccccCccceEEEEe-CCCCEEEEEEeecCCCc--chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      +|...++||+|+||.||+|.. .+++.|+||.++.....  ..++|.+|+++|++++|.||++++|++.+.+..++|+||
T Consensus         1 ~y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (264)
T cd06626           1 RWQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEY   80 (264)
T ss_pred             CceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEec
Confidence            366678999999999999986 46889999999765443  456899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCcccchhHHHHHHHHHHh
Q 011696          445 VPNNTLYFHLHGKWQLGFDIRNHNNGLLILT  475 (479)
Q Consensus       445 ~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~  475 (479)
                      +.+++|.++++.+..+.++...++..-++.+
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~  111 (264)
T cd06626          81 CSGGTLEELLEHGRILDEHVIRVYTLQLLEG  111 (264)
T ss_pred             CCCCcHHHHHhhcCCCChHHHHHHHHHHHHH
Confidence            9999999999876444444444443333333

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.51  E-value=4.2e-14  Score=147.07  Aligned_cols=114  Identities=18%  Similarity=0.232  Sum_probs=89.5

Q ss_pred             HhcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCc--chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEE
Q 011696          365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       365 ~~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      ...+|.....||+|.|++|..|+. ..|..||||.++....+  ....+.+|+++|+.|+|+|||+|+.|.+....+|||
T Consensus        54 ~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~lylV  133 (596)
T KOG0586|consen   54 SVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEATLYLV  133 (596)
T ss_pred             cccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecceeEEE
Confidence            346678889999999999999984 45889999998654332  234699999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          442 YDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||+.+|+|++||+...+.......+++.....++.|
T Consensus       134 ~eya~~ge~~~yl~~~gr~~e~~ar~~F~q~vsaveY  170 (596)
T KOG0586|consen  134 MEYASGGELFDYLVKHGRMKEKEARAKFRQIVSAVEY  170 (596)
T ss_pred             EEeccCchhHHHHHhcccchhhhhhhhhHHHHHHHHH
Confidence            9999999999988765444334444444444444444

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.51  E-value=5.9e-14  Score=137.86  Aligned_cols=93  Identities=28%  Similarity=0.471  Sum_probs=79.4

Q ss_pred             hcCccccccccccCccceEEEEeCC------CCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLPD------GREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRR  438 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~~------g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~  438 (479)
                      .++|...++||+|+||.||+|.+.+      ++.|++|.++.... ..+.+|.+|+.+|++++|+||++++|+|.+.+..
T Consensus         5 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   84 (277)
T cd05036           5 RDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERLPR   84 (277)
T ss_pred             HHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCc
Confidence            3567888999999999999998743      46789998864443 3345799999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCC
Q 011696          439 LLIYDYVPNNTLYFHLHGKW  458 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~~  458 (479)
                      +|||||+.+|+|.++++...
T Consensus        85 ~lv~e~~~g~~L~~~i~~~~  104 (277)
T cd05036          85 FILLELMAGGDLKSFLRENR  104 (277)
T ss_pred             EEEEecCCCCCHHHHHHHhC
Confidence            99999999999999998643

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.51  E-value=9e-14  Score=134.27  Aligned_cols=86  Identities=24%  Similarity=0.453  Sum_probs=74.5

Q ss_pred             ccccccCccceEEEEe-CCCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCCCH
Q 011696          373 NLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL  450 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~GsL  450 (479)
                      ++||+|+||.||+|.. .+|+.||||.++.... ....+|.+|+++|++++|+||++++++|...+..+|||||+.+|+|
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDF   80 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCCcH
Confidence            4699999999999986 4688999998864332 3345799999999999999999999999999999999999999999


Q ss_pred             HHHHhcCC
Q 011696          451 YFHLHGKW  458 (479)
Q Consensus       451 ~~~L~~~~  458 (479)
                      .++++.+.
T Consensus        81 ~~~~~~~~   88 (252)
T cd05084          81 LTFLRTEG   88 (252)
T ss_pred             HHHHHhCC
Confidence            99997543

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.50  E-value=4.6e-14  Score=139.08  Aligned_cols=111  Identities=17%  Similarity=0.228  Sum_probs=88.2

Q ss_pred             CccccccccccCccceEEEEeC-CCCEEEEEEeecCC-CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      +|...+.||+|+||+||++... +|+.||+|.++... ....++|.+|+++|++++|+||++++|+|..++..+|||||+
T Consensus         2 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~   81 (286)
T cd06622           2 EIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCMEYM   81 (286)
T ss_pred             hhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEeec
Confidence            4566788999999999999864 68899999987543 233467999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcC---CcccchhHHHHHHHHHHhhcc
Q 011696          446 PNNTLYFHLHGK---WQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       446 ~~GsL~~~L~~~---~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      .+|+|.++++..   ..+.+++...+..-++.++.|
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~  117 (286)
T cd06622          82 DAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKF  117 (286)
T ss_pred             CCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHH
Confidence            999999998763   234455555555444444444

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.50  E-value=8.6e-14  Score=134.96  Aligned_cols=89  Identities=28%  Similarity=0.482  Sum_probs=77.8

Q ss_pred             CccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCC
Q 011696          368 GFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~  447 (479)
                      +|...+.||+|+||.||+|.+.+++.+|||.++... ...++|.+|+++|++++|+||++++++|.+.+..++||||+++
T Consensus         5 ~~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~   83 (256)
T cd05059           5 ELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGA-MSEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYMAN   83 (256)
T ss_pred             HcchhhhhccCCCceEEEeEecCCccEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEecCCC
Confidence            356678899999999999988777789999886432 3345799999999999999999999999999999999999999


Q ss_pred             CCHHHHHhcC
Q 011696          448 NTLYFHLHGK  457 (479)
Q Consensus       448 GsL~~~L~~~  457 (479)
                      |+|+++++.+
T Consensus        84 ~~L~~~l~~~   93 (256)
T cd05059          84 GCLLNYLRER   93 (256)
T ss_pred             CCHHHHHHhc
Confidence            9999999754

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.50  E-value=9.3e-14  Score=134.08  Aligned_cols=99  Identities=19%  Similarity=0.300  Sum_probs=82.6

Q ss_pred             CccccccccccCccceEEEEe-CCCCEEEEEEeecCC--CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      +|...+.||+|+||.||+|+. .+|+.|++|.+....  ....++|.+|+++|++++|+||++++++|.+++..+|||||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEY   80 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEEe
Confidence            466778999999999999986 468899999986432  34456799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCcccchhHH
Q 011696          445 VPNNTLYFHLHGKWQLGFDIRN  466 (479)
Q Consensus       445 ~~~GsL~~~L~~~~~~~~~~~~  466 (479)
                      +.+++|.++++......+++..
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~  102 (256)
T cd08529          81 AENGDLHKLLKMQRGRPLPEDQ  102 (256)
T ss_pred             CCCCcHHHHHHHhcCCCCCHHH
Confidence            9999999999875433344433

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.50  E-value=6.6e-14  Score=138.01  Aligned_cols=111  Identities=20%  Similarity=0.228  Sum_probs=84.8

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      ++|...++||+|+||+||+|+.. +++.||||+++....  ...+.+.+|+++|++++|+||++++++|..++..+||||
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (287)
T cd07848           1 NKFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFE   80 (287)
T ss_pred             CCceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEEe
Confidence            35777889999999999999874 578899999975432  234578999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhc
Q 011696          444 YVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       444 y~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~  477 (479)
                      |+.+|.|..+.+.+..+.++....+..-++.++.
T Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~L~  114 (287)
T cd07848          81 YVEKNMLELLEEMPNGVPPEKVRSYIYQLIKAIH  114 (287)
T ss_pred             cCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            9999877665544333444444444443344433

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.50  E-value=1.3e-13  Score=133.79  Aligned_cols=111  Identities=23%  Similarity=0.422  Sum_probs=88.5

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC-----cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG-----QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~-----~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~L  440 (479)
                      ++|...++||+|+||.||+|.. .+++.||||.++....     ...+.|.+|+++|++++|+||++++|++.+++..++
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   81 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSI   81 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEE
Confidence            4678889999999999999985 4688999999864322     123468999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhc
Q 011696          441 IYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~  477 (479)
                      ||||+.+|+|.+++.....+..++..++..-++.++.
T Consensus        82 v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~  118 (263)
T cd06625          82 FMEYMPGGSVKDQLKAYGALTETVTRKYTRQILEGVE  118 (263)
T ss_pred             EEEECCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999876555555555554444444443

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.50  E-value=1e-13  Score=136.42  Aligned_cols=90  Identities=30%  Similarity=0.458  Sum_probs=76.9

Q ss_pred             cCccccccccccCccceEEEEe-----CCCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-----PDGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-----~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~L  440 (479)
                      ++|...++||+|+||+||+|.+     .+++.|+||.++.... ...++|.+|+++|++++|+||++++|++...+..+|
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l   84 (283)
T cd05090           5 SAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPVCM   84 (283)
T ss_pred             hhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCceEE
Confidence            3466678899999999999974     2457899999974333 334679999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhc
Q 011696          441 IYDYVPNNTLYFHLHG  456 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~  456 (479)
                      ||||+.+|+|.++++.
T Consensus        85 v~e~~~~~~L~~~l~~  100 (283)
T cd05090          85 LFEYLNQGDLHEFLIM  100 (283)
T ss_pred             EEEcCCCCcHHHHHHh
Confidence            9999999999999864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.50  E-value=7.8e-14  Score=137.88  Aligned_cols=91  Identities=27%  Similarity=0.559  Sum_probs=78.9

Q ss_pred             cCccccccccccCccceEEEEeC------CCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~------~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~L  440 (479)
                      ++|...+.||+|+||+||++...      ++..||||.++.......++|.+|+++|++++|+||++++++|...+..+|
T Consensus         5 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   84 (288)
T cd05093           5 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM   84 (288)
T ss_pred             HHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEE
Confidence            56778899999999999999742      245689999876555556689999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcC
Q 011696          441 IYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~  457 (479)
                      ||||+.+|+|.++++..
T Consensus        85 v~e~~~~~~L~~~i~~~  101 (288)
T cd05093          85 VFEYMKHGDLNKFLRAH  101 (288)
T ss_pred             EEEcCCCCCHHHHHHHc
Confidence            99999999999998743

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.50  E-value=6.5e-14  Score=144.23  Aligned_cols=118  Identities=16%  Similarity=0.188  Sum_probs=91.2

Q ss_pred             HHHHHHhcCccccccccccCccceEEEEeC-CCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeC
Q 011696          360 EELVKATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISD  435 (479)
Q Consensus       360 eel~~~~~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~  435 (479)
                      .++....++|...++||+|+||.||++... +++.||+|+++...   ....+.|.+|+++|+.++|+||+++++++.++
T Consensus        36 ~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~  115 (371)
T cd05622          36 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDD  115 (371)
T ss_pred             hhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcC
Confidence            344445678899999999999999999864 57889999986422   22334688999999999999999999999999


Q ss_pred             CeEEEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          436 DRRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       436 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      +..+||||||.+|+|.++++.+ .+...+...+..-++.++.|
T Consensus       116 ~~~~lv~Ey~~gg~L~~~~~~~-~~~~~~~~~~~~qi~~aL~~  157 (371)
T cd05622         116 RYLYMVMEYMPGGDLVNLMSNY-DVPEKWARFYTAEVVLALDA  157 (371)
T ss_pred             CEEEEEEcCCCCCcHHHHHHhc-CCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988754 34444444444444444443

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.50  E-value=9.9e-14  Score=137.30  Aligned_cols=110  Identities=26%  Similarity=0.365  Sum_probs=88.2

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||.||++.. .+++.||||+++...   ....+.|.+|+++|++++|+||+++++++.+++..++||
T Consensus         1 ~~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   80 (290)
T cd05580           1 DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVM   80 (290)
T ss_pred             CceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEE
Confidence            3577789999999999999986 468899999986432   223456999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhh
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~  476 (479)
                      ||+.+|+|.++++....+.......+..-++.++
T Consensus        81 e~~~~~~L~~~~~~~~~l~~~~~~~~~~qil~~l  114 (290)
T cd05580          81 EYVPGGELFSHLRKSGRFPEPVARFYAAQVVLAL  114 (290)
T ss_pred             ecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            9999999999998766555555444444344433

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.50  E-value=1.3e-13  Score=139.60  Aligned_cols=106  Identities=20%  Similarity=0.290  Sum_probs=83.6

Q ss_pred             ccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEEEEecCCC
Q 011696          373 NLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYDYVPN  447 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~LV~Ey~~~  447 (479)
                      ++||+|+||+||+++. .+++.||||+++...   ....+.+.+|+.+|.++ +|+||+++++++.+.+..+||||||.+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~   80 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNG   80 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCC
Confidence            4699999999999986 457889999997532   23345688999999887 899999999999999999999999999


Q ss_pred             CCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          448 NTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       448 GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |+|.+++..+..+.++....+..-++.++.|
T Consensus        81 ~~L~~~~~~~~~l~~~~~~~i~~qi~~~l~~  111 (329)
T cd05618          81 GDLMFHMQRQRKLPEEHARFYSAEISLALNY  111 (329)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            9999888766555555555554444444444

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.49  E-value=8.2e-14  Score=139.80  Aligned_cols=90  Identities=29%  Similarity=0.552  Sum_probs=74.8

Q ss_pred             cCccccccccccCccceEEEEeC-CCC----EEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGR----EVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~----~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~L  440 (479)
                      .+|...++||+|+||.||+|++. +|+    .||||.++.... ...++|.+|+.+|+.++|+||++++|+|... ..++
T Consensus         7 ~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~-~~~~   85 (316)
T cd05108           7 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQL   85 (316)
T ss_pred             hhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCC-Ccee
Confidence            45777899999999999999853 333    389999875433 3456899999999999999999999999764 5679


Q ss_pred             EEecCCCCCHHHHHhcC
Q 011696          441 IYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~  457 (479)
                      |+||+.+|+|+++++.+
T Consensus        86 v~e~~~~g~l~~~l~~~  102 (316)
T cd05108          86 ITQLMPFGCLLDYVREH  102 (316)
T ss_pred             eeecCCCCCHHHHHHhc
Confidence            99999999999998864

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.49  E-value=1e-13  Score=135.25  Aligned_cols=92  Identities=27%  Similarity=0.448  Sum_probs=77.4

Q ss_pred             cCccccccccccCccceEEEEeC-C---CCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-D---GREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~---g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      ++|...++||+|+||.||+|... +   +..||||.++.... ...++|.+|+++|.+++|+||++++|+|.+++..+||
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   83 (267)
T cd05066           4 SCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMIV   83 (267)
T ss_pred             HHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEE
Confidence            45667789999999999999753 2   33699999875432 3345799999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCC
Q 011696          442 YDYVPNNTLYFHLHGKW  458 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~~  458 (479)
                      |||+++|+|.++++.+.
T Consensus        84 ~e~~~~~~L~~~~~~~~  100 (267)
T cd05066          84 TEYMENGSLDAFLRKHD  100 (267)
T ss_pred             EEcCCCCCHHHHHHhcC
Confidence            99999999999998653

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.49  E-value=1.2e-13  Score=139.20  Aligned_cols=106  Identities=23%  Similarity=0.301  Sum_probs=82.8

Q ss_pred             ccccccCccceEEEEeC-CCCEEEEEEeecCC---CcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEEEEecCCC
Q 011696          373 NLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYDYVPN  447 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~LV~Ey~~~  447 (479)
                      ++||+|+||+||+|+.. +|+.||||+++...   ....+.+..|+++|..+ +|+||++++++|.+.+..||||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~   80 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNG   80 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCC
Confidence            46999999999999864 57899999997432   23345688999999876 899999999999999999999999999


Q ss_pred             CCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          448 NTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       448 GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |+|.++++....+.+.....+..-++.++.|
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~  111 (321)
T cd05591          81 GDLMFQIQRSRKFDEPRSRFYAAEVTLALMF  111 (321)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            9999988766655555544444444444443

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.49  E-value=1.5e-13  Score=133.57  Aligned_cols=90  Identities=20%  Similarity=0.414  Sum_probs=78.7

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||.||+|... +|+.||||.++...   ....++|.+|+++|++++|.||++++++|.+++..++||
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~   81 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVL   81 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEE
Confidence            56888899999999999999875 78999999886422   223457999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhc
Q 011696          443 DYVPNNTLYFHLHG  456 (479)
Q Consensus       443 Ey~~~GsL~~~L~~  456 (479)
                      ||+.+|+|.+++..
T Consensus        82 e~~~~~~L~~~l~~   95 (267)
T cd08224          82 ELADAGDLSRMIKH   95 (267)
T ss_pred             ecCCCCCHHHHHHH
Confidence            99999999998853

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.49  E-value=1.4e-13  Score=139.20  Aligned_cols=111  Identities=23%  Similarity=0.342  Sum_probs=86.6

Q ss_pred             CccccccccccCccceEEEEe----CCCCEEEEEEeecCC----CcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeE
Q 011696          368 GFADQNLLGEGGFGSVYKGYL----PDGREVAIKQLKIGG----GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRR  438 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~----~~g~~VAVK~l~~~~----~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~  438 (479)
                      +|...++||+|+||+||+++.    .+|+.||||+++...    ....+.+.+|+++|.++ +|+||+++++++.+++..
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKL   80 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEE
Confidence            466778999999999999874    357899999996422    22345688999999999 599999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          439 LLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      +||||||.+|+|.++++.+..+.++....+..-++.++.|
T Consensus        81 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~  120 (332)
T cd05614          81 HLILDYVSGGEMFTHLYQRDNFSEDEVRFYSGEIILALEH  120 (332)
T ss_pred             EEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999876655555554444444444433

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.49  E-value=1.4e-13  Score=135.13  Aligned_cols=112  Identities=18%  Similarity=0.237  Sum_probs=88.7

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      ++|...++||+|+||.||+|... +|+.||+|++.....  ...+.|.+|+++|++++|+||++++++|...+..+||||
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e   80 (286)
T cd07847           1 EKYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVFE   80 (286)
T ss_pred             CceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEEe
Confidence            35677789999999999999864 588999999864432  233568999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          444 YVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       444 y~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||+++.|.++++....+.++....+..-++.++.|
T Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~ql~~~l~~  115 (286)
T cd07847          81 YCDHTVLNELEKNPRGVPEHLIKKIIWQTLQAVNF  115 (286)
T ss_pred             ccCccHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999998887655555555555555545554444

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.48  E-value=2.1e-13  Score=132.12  Aligned_cols=111  Identities=15%  Similarity=0.214  Sum_probs=90.1

Q ss_pred             CccccccccccCccceEEEEeC-CCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      +|...++||+|+||.||++... +|+.|+||+++.... ...++|.+|++++.+++|.||++++++|...+..+|||||+
T Consensus         2 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~   81 (264)
T cd06623           2 DLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLEYM   81 (264)
T ss_pred             cceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEEec
Confidence            5777899999999999999865 489999999976544 34568999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          446 PNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       446 ~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      .+|+|.+++.....+.......+..-++.++.+
T Consensus        82 ~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~  114 (264)
T cd06623          82 DGGSLADLLKKVGKIPEPVLAYIARQILKGLDY  114 (264)
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999865544454444444444444433

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.48  E-value=9.1e-14  Score=137.42  Aligned_cols=91  Identities=23%  Similarity=0.394  Sum_probs=77.2

Q ss_pred             hcCccccccccccCccceEEEEeC------CCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRR  438 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~------~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~  438 (479)
                      .++|...++||+|+||.||+|...      ++..||||.++.... ....+|.+|+.+|++++|+||++++|+|.+.+..
T Consensus         5 ~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   84 (288)
T cd05061           5 REKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQPT   84 (288)
T ss_pred             HHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCc
Confidence            456777899999999999999753      245799998864432 2334699999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhc
Q 011696          439 LLIYDYVPNNTLYFHLHG  456 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~  456 (479)
                      +|||||+.+|+|.++++.
T Consensus        85 ~lv~e~~~~g~L~~~l~~  102 (288)
T cd05061          85 LVVMELMAHGDLKSYLRS  102 (288)
T ss_pred             EEEEeCCCCCCHHHHHHH
Confidence            999999999999999975

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.48  E-value=1.5e-13  Score=151.96  Aligned_cols=112  Identities=18%  Similarity=0.174  Sum_probs=89.8

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCCC---cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||+||+|+.. +++.||||+++....   ...++|.+|+++|+.++|+||+++++++...+..||||
T Consensus         4 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lVm   83 (669)
T cd05610           4 EEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLVM   83 (669)
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEEE
Confidence            56788899999999999999864 688999999975432   22357899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||.+|+|.++|+....+.+....++..-++.+|.|
T Consensus        84 Ey~~g~~L~~li~~~~~l~~~~~~~i~~qil~aL~y  119 (669)
T cd05610          84 EYLIGGDVKSLLHIYGYFDEEMAVKYISEVALALDY  119 (669)
T ss_pred             eCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999998765555555554444444444444

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.48  E-value=1.5e-13  Score=138.69  Aligned_cols=106  Identities=21%  Similarity=0.321  Sum_probs=80.9

Q ss_pred             ccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHH-HHHhCCCCCccceEEEEEeCCeEEEEEecCCC
Q 011696          373 NLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVE-IISRIHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~-il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~  447 (479)
                      ++||+|+||+||+++. .+|+.||||+++...   ....+++.+|.. +++.++|+||++++++|..++..+||||||.+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNG   80 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCC
Confidence            4699999999999985 468899999996432   223345666665 56779999999999999999999999999999


Q ss_pred             CCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          448 NTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       448 GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |+|.++++.+..+.++....+..-++.++.|
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~  111 (325)
T cd05604          81 GELFFHLQRERSFPEPRARFYAAEIASALGY  111 (325)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            9999988776655555554444444444443

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.48  E-value=2.1e-13  Score=132.77  Aligned_cols=108  Identities=20%  Similarity=0.395  Sum_probs=84.7

Q ss_pred             ccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcc---------hHhHHHHHHHHHhCCCCCccceEEEEEeCCeE
Q 011696          369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQG---------EREFKAEVEIISRIHHRHLVSLVGYCISDDRR  438 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~---------~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~  438 (479)
                      |....+||+|+||.||+|.. .+++.||||.++......         .+.|.+|+++|++++|+||++++|++.+.+..
T Consensus         2 ~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   81 (267)
T cd06628           2 WIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADHL   81 (267)
T ss_pred             ccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCcc
Confidence            55668899999999999985 467899999886433211         24588999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhh
Q 011696          439 LLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~  476 (479)
                      ++||||+.+++|.+++.....+.++....+..-+..++
T Consensus        82 ~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l  119 (267)
T cd06628          82 NIFLEYVPGGSVAALLNNYGAFEETLVRNFVRQILKGL  119 (267)
T ss_pred             EEEEEecCCCCHHHHHHhccCccHHHHHHHHHHHHHHH
Confidence            99999999999999997665554444444444343333

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.48  E-value=1.6e-13  Score=133.66  Aligned_cols=110  Identities=21%  Similarity=0.372  Sum_probs=84.5

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC-----cchHhHHHHHHHHHhCCCCCccceEEEEEeC--CeE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG-----QGEREFKAEVEIISRIHHRHLVSLVGYCISD--DRR  438 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~-----~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~--~~~  438 (479)
                      ++|...++||+|+||.||+|.. .+|+.||||+++....     ...+.|.+|+++|++++|+||++++|++.+.  +..
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTL   81 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceE
Confidence            4677889999999999999986 4588999999863221     1234688999999999999999999998764  456


Q ss_pred             EEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhh
Q 011696          439 LLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~  476 (479)
                      ++||||+.+|+|.+++.....+.+++..++..-+..++
T Consensus        82 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l  119 (265)
T cd06652          82 SIFMEHMPGGSIKDQLKSYGALTENVTRKYTRQILEGV  119 (265)
T ss_pred             EEEEEecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            79999999999999987655555555554444444443

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.48  E-value=1.4e-13  Score=134.33  Aligned_cols=106  Identities=22%  Similarity=0.309  Sum_probs=81.9

Q ss_pred             ccccccCccceEEEEeCC-------------CCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEE
Q 011696          373 NLLGEGGFGSVYKGYLPD-------------GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL  439 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~~-------------g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~  439 (479)
                      +.||+|+||+||+|++.+             +..|+||.++.........|.+|+.+|+.++|+||++++|+|.+++..+
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~~~   80 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVRDVENI   80 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCE
Confidence            468999999999998532             2258888876544444557999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcC-CcccchhHHHHHHHHHHhhcc
Q 011696          440 LIYDYVPNNTLYFHLHGK-WQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||||+.+|+|..+++.+ ..+.+++...+..-+..++.|
T Consensus        81 lv~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~l~~  120 (262)
T cd05077          81 MVEEFVEFGPLDLFMHRKSDVLTTPWKFKVAKQLASALSY  120 (262)
T ss_pred             EEEecccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999998754 335555555544444444444

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.48  E-value=1.3e-13  Score=141.63  Aligned_cols=91  Identities=24%  Similarity=0.362  Sum_probs=79.5

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCCC---cchHhHHHHHHHHHhCC-CCCccceEEEEEeCCeEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG---QGEREFKAEVEIISRIH-HRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~-HpNIv~LlG~~~~~~~~~LV  441 (479)
                      +.|...++||+|.||.||+++.. +|+.+|+|.++....   .+.+.+.+|+.+|++|. |+|||.|.+++.+.+.++||
T Consensus        35 ~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~lv  114 (382)
T KOG0032|consen   35 EKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVYLV  114 (382)
T ss_pred             ccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEEEE
Confidence            45777789999999999999864 499999999964433   23468999999999998 99999999999999999999


Q ss_pred             EecCCCCCHHHHHhcC
Q 011696          442 YDYVPNNTLYFHLHGK  457 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~  457 (479)
                      ||+|.+|+|++++..+
T Consensus       115 mEL~~GGeLfd~i~~~  130 (382)
T KOG0032|consen  115 MELCEGGELFDRIVKK  130 (382)
T ss_pred             EEecCCchHHHHHHHc
Confidence            9999999999988765

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.48  E-value=5.5e-15  Score=140.64  Aligned_cols=88  Identities=23%  Similarity=0.442  Sum_probs=72.1

Q ss_pred             CccccccccccCccceEEEE-eCCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEE-EEEeCCe-EEEEE
Q 011696          368 GFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVG-YCISDDR-RLLIY  442 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~-~~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG-~~~~~~~-~~LV~  442 (479)
                      +|...++||+|.||+|||+. +.+|..||.|.++.+..  ....++.+||.+|+.|+|+|||++++ -+.++.+ ++|||
T Consensus        20 ~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlnivm   99 (375)
T KOG0591|consen   20 DYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNIVM   99 (375)
T ss_pred             HHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHHHH
Confidence            34556889999999999996 57899999999985433  33457999999999999999999999 4444444 68999


Q ss_pred             ecCCCCCHHHHHh
Q 011696          443 DYVPNNTLYFHLH  455 (479)
Q Consensus       443 Ey~~~GsL~~~L~  455 (479)
                      |||.+|||...+.
T Consensus       100 E~c~~GDLsqmIk  112 (375)
T KOG0591|consen  100 ELCDAGDLSQMIK  112 (375)
T ss_pred             HhhcccCHHHHHH
Confidence            9999999977664

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.48  E-value=1.3e-13  Score=146.85  Aligned_cols=88  Identities=18%  Similarity=0.245  Sum_probs=76.5

Q ss_pred             ccccccccccCccceEEEEe-CC-CCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCC
Q 011696          369 FADQNLLGEGGFGSVYKGYL-PD-GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~-~~-g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~  446 (479)
                      |...++||+|+||.||++.. .+ ++.||+|.+..........|.+|+++|++++|+|||+++++|..++..|||||||.
T Consensus        69 y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~E~~~  148 (478)
T PTZ00267         69 YVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEYGS  148 (478)
T ss_pred             EEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEEECCC
Confidence            67788999999999999974 33 67889998765544445578899999999999999999999999999999999999


Q ss_pred             CCCHHHHHhc
Q 011696          447 NNTLYFHLHG  456 (479)
Q Consensus       447 ~GsL~~~L~~  456 (479)
                      +|+|.++|+.
T Consensus       149 gg~L~~~l~~  158 (478)
T PTZ00267        149 GGDLNKQIKQ  158 (478)
T ss_pred             CCCHHHHHHH
Confidence            9999998865

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.48  E-value=1.6e-13  Score=138.08  Aligned_cols=106  Identities=22%  Similarity=0.301  Sum_probs=83.5

Q ss_pred             ccccccCccceEEEEeC-CCCEEEEEEeecCC---CcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEEEEecCCC
Q 011696          373 NLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYDYVPN  447 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~LV~Ey~~~  447 (479)
                      ++||+|+||+||+++.. +++.||||+++...   ....+.+.+|+++|..+ +|+||++++++|.+.+..+|||||+.+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~   80 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNG   80 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            46999999999999864 57889999997432   23345688999999988 799999999999999999999999999


Q ss_pred             CCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          448 NTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       448 GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |+|.++++.+..+.++....+..-++.++.|
T Consensus        81 ~~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~  111 (318)
T cd05570          81 GDLMFHIQRSGRFDEPRARFYAAEIVLGLQF  111 (318)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            9999998876655555555444444444433

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.48  E-value=1.4e-13  Score=136.34  Aligned_cols=100  Identities=22%  Similarity=0.333  Sum_probs=81.0

Q ss_pred             CccccccccccCccceEEEEe-CCCCEEEEEEeecCCCc-----chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEE
Q 011696          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ-----GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~-----~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      +|...++||+|+||.||+|.. .+|+.||||+++.....     ....+.+|+++|++++|+||++++++|.+++..+||
T Consensus         1 ~y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv   80 (298)
T cd07841           1 RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLV   80 (298)
T ss_pred             CceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEE
Confidence            366678899999999999986 46889999999754432     234578999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCC-cccchhHHHH
Q 011696          442 YDYVPNNTLYFHLHGKW-QLGFDIRNHN  468 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~~-~~~~~~~~~~  468 (479)
                      |||+ +|+|.++++.+. .+.++....+
T Consensus        81 ~e~~-~~~L~~~i~~~~~~~~~~~~~~~  107 (298)
T cd07841          81 FEFM-ETDLEKVIKDKSIVLTPADIKSY  107 (298)
T ss_pred             Eccc-CCCHHHHHhccCCCCCHHHHHHH
Confidence            9999 999999998654 3444333333

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.48  E-value=2.6e-13  Score=132.06  Aligned_cols=89  Identities=18%  Similarity=0.402  Sum_probs=77.2

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||.||+|+. .+++.||||.++...   .....+|.+|+++|++++|+||+++++++.+.+..++||
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVL   81 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEE
Confidence            4677889999999999999985 478899999886432   223346999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHh
Q 011696          443 DYVPNNTLYFHLH  455 (479)
Q Consensus       443 Ey~~~GsL~~~L~  455 (479)
                      ||+.+|+|.+++.
T Consensus        82 e~~~~~~L~~~~~   94 (267)
T cd08228          82 ELADAGDLSQMIK   94 (267)
T ss_pred             EecCCCcHHHHHH
Confidence            9999999998875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.48  E-value=1.5e-13  Score=138.41  Aligned_cols=106  Identities=22%  Similarity=0.311  Sum_probs=79.3

Q ss_pred             ccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHH-HHHhCCCCCccceEEEEEeCCeEEEEEecCCC
Q 011696          373 NLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVE-IISRIHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~-il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~  447 (479)
                      ++||+|+||+||+|+. .+|+.||||+++...   ....+++++|+. +++.++|+||++++++|.+.+..+||||||++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNG   80 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            4699999999999986 468899999996432   223345666654 67889999999999999999999999999999


Q ss_pred             CCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          448 NTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       448 GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |+|.+++..+..+..+....+..-++.++.|
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~  111 (321)
T cd05603          81 GELFFHLQRERCFLEPRARFYAAEVASAIGY  111 (321)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            9999888765554444444443334444433

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.48  E-value=1.5e-13  Score=134.03  Aligned_cols=91  Identities=31%  Similarity=0.552  Sum_probs=77.7

Q ss_pred             cCccccccccccCccceEEEEeC-CCC---EEEEEEeecCC-CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGR---EVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~---~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      ++|...++||+|+||.||+|++. +++   .|+||.++... ....++|.+|+++|++++|+||++++|+|.+.+..+||
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   84 (268)
T cd05063           5 SHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPAMII   84 (268)
T ss_pred             HHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCcEEE
Confidence            46777899999999999999864 233   68999887543 23345799999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcC
Q 011696          442 YDYVPNNTLYFHLHGK  457 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~  457 (479)
                      |||+.+|+|.++++.+
T Consensus        85 ~e~~~~~~L~~~~~~~  100 (268)
T cd05063          85 TEYMENGALDKYLRDH  100 (268)
T ss_pred             EEcCCCCCHHHHHHhc
Confidence            9999999999999764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.48  E-value=9.9e-14  Score=137.65  Aligned_cols=91  Identities=30%  Similarity=0.481  Sum_probs=76.2

Q ss_pred             cCccccccccccCccceEEEEeCC---------------CCEEEEEEeecCCCc-chHhHHHHHHHHHhCCCCCccceEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPD---------------GREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVG  430 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~---------------g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~LlG  430 (479)
                      ++|...+.||+|+||.||+++..+               ...||||+++..... ..++|.+|+++|++++|+||++++|
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~   84 (295)
T cd05097           5 QQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLG   84 (295)
T ss_pred             HhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEEE
Confidence            457777899999999999987532               235899998754333 3457999999999999999999999


Q ss_pred             EEEeCCeEEEEEecCCCCCHHHHHhcC
Q 011696          431 YCISDDRRLLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       431 ~~~~~~~~~LV~Ey~~~GsL~~~L~~~  457 (479)
                      +|...+..+||||||.+|+|.++++.+
T Consensus        85 ~~~~~~~~~lv~e~~~~~~L~~~l~~~  111 (295)
T cd05097          85 VCVSDDPLCMITEYMENGDLNQFLSQR  111 (295)
T ss_pred             EEcCCCccEEEEecCCCCcHHHHHHhc
Confidence            999999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.48  E-value=2e-13  Score=135.80  Aligned_cols=91  Identities=19%  Similarity=0.348  Sum_probs=81.1

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      ++|...+.||+|+||.||+|.. .+|+.||||.+........+.|.+|+.+|++++|+||++++|+|..++..++||||+
T Consensus        19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~   98 (297)
T cd06656          19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL   98 (297)
T ss_pred             hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEeeccc
Confidence            5677788999999999999985 578999999997665555677999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcC
Q 011696          446 PNNTLYFHLHGK  457 (479)
Q Consensus       446 ~~GsL~~~L~~~  457 (479)
                      .+|+|.++++..
T Consensus        99 ~~~~L~~~~~~~  110 (297)
T cd06656          99 AGGSLTDVVTET  110 (297)
T ss_pred             CCCCHHHHHHhC
Confidence            999999988653

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.48  E-value=1.8e-13  Score=137.69  Aligned_cols=106  Identities=21%  Similarity=0.308  Sum_probs=82.4

Q ss_pred             ccccccCccceEEEEeC-CCCEEEEEEeecCC---CcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEEEEecCCC
Q 011696          373 NLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYDYVPN  447 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~LV~Ey~~~  447 (479)
                      ++||+|+||+||+|+.. +++.||||+++...   ..+.+.+..|+++|..+ +|+||++++++|.+.+..+|||||+.+
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~   80 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCC
Confidence            46999999999999864 57889999997532   23345677888888864 999999999999999999999999999


Q ss_pred             CCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          448 NTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       448 GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |+|.+++..+..+.+.....+..-++.++.|
T Consensus        81 g~L~~~l~~~~~~~~~~~~~~~~qi~~al~~  111 (316)
T cd05619          81 GDLMFHIQSCHKFDLPRATFYAAEIICGLQF  111 (316)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            9999998766555555555544444444443

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.48  E-value=8.1e-14  Score=135.07  Aligned_cols=111  Identities=20%  Similarity=0.233  Sum_probs=88.4

Q ss_pred             CccccccccccCccceEEEEeC-CCCEEEEEEeecCCC---cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      +|...++||+|+||.||+|... +++.||+|.+.....   ...++|.+|+++|++++|+||++++++|.+.+..++|+|
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVD   80 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEe
Confidence            4677889999999999999864 588999999964332   345689999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          444 YVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       444 y~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |+.+|+|.+++..+..+..+....+..-++.++.|
T Consensus        81 ~~~~~~L~~~l~~~~~l~~~~~~~~~~~i~~~l~~  115 (258)
T cd05578          81 LLLGGDLRYHLSQKVKFSEEQVKFWICEIVLALEY  115 (258)
T ss_pred             CCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHH
Confidence            99999999999876444444444444444444433

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.48  E-value=7.5e-14  Score=137.30  Aligned_cols=102  Identities=22%  Similarity=0.303  Sum_probs=82.4

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      ++|...++||+|+||.||+|... +++.||||++.....  ...+.|.+|+++|++++|+||++++++|.+++..+||||
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (286)
T cd07846           1 EKYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFE   80 (286)
T ss_pred             CceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEe
Confidence            35677789999999999999974 588999998864332  234578999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCcccchhHHHH
Q 011696          444 YVPNNTLYFHLHGKWQLGFDIRNHN  468 (479)
Q Consensus       444 y~~~GsL~~~L~~~~~~~~~~~~~~  468 (479)
                      |+.+++|.++++....+.++....+
T Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~~  105 (286)
T cd07846          81 FVDHTVLDDLEKYPNGLDESRVRKY  105 (286)
T ss_pred             cCCccHHHHHHhccCCCCHHHHHHH
Confidence            9999999888765444444444333

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.48  E-value=1.5e-13  Score=136.01  Aligned_cols=111  Identities=19%  Similarity=0.270  Sum_probs=87.9

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      ++|...++||+|+||.||+|+.. +++.|++|++........++|.+|++++++++|+||++++++|..++..+|||||+
T Consensus        12 ~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   91 (292)
T cd06644          12 EVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMIEFC   91 (292)
T ss_pred             hhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEEecC
Confidence            45666788999999999999864 57899999997665555678999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcC-CcccchhHHHHHHHHHHhhc
Q 011696          446 PNNTLYFHLHGK-WQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       446 ~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~~  477 (479)
                      .+|+|..+++.. ..+.++...++..-++.++.
T Consensus        92 ~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~  124 (292)
T cd06644          92 PGGAVDAIMLELDRGLTEPQIQVICRQMLEALQ  124 (292)
T ss_pred             CCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Confidence            999998887643 23344444444444444443

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.48  E-value=1.8e-13  Score=132.91  Aligned_cols=98  Identities=29%  Similarity=0.468  Sum_probs=81.1

Q ss_pred             cCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~  446 (479)
                      ++|...++||+|+||.||+|...+++.||||.++... ...++|.+|+++|++++|+||+++++++ ..+..++||||+.
T Consensus         6 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~~v~e~~~   83 (260)
T cd05067           6 ETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGS-MSPEAFLAEANLMKQLQHPRLVRLYAVV-TQEPIYIITEYME   83 (260)
T ss_pred             HHceeeeeeccCccceEEeeecCCCceEEEEEecCCC-CcHHHHHHHHHHHHhcCCcCeeeEEEEE-ccCCcEEEEEcCC
Confidence            4577778999999999999998889999999987433 3456899999999999999999999987 4567899999999


Q ss_pred             CCCHHHHHhcCCcccchhHH
Q 011696          447 NNTLYFHLHGKWQLGFDIRN  466 (479)
Q Consensus       447 ~GsL~~~L~~~~~~~~~~~~  466 (479)
                      +|+|.++++......+++..
T Consensus        84 ~~~L~~~~~~~~~~~~~~~~  103 (260)
T cd05067          84 NGSLVDFLKTPEGIKLTINK  103 (260)
T ss_pred             CCCHHHHHHhcCCCCCCHHH
Confidence            99999998765433344433

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.48  E-value=1.8e-13  Score=136.58  Aligned_cols=110  Identities=16%  Similarity=0.224  Sum_probs=86.8

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC---cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...+.||+|+||.||++.. ..++.|+||.++....   ...++|.+|+++|++++|+||++++++|..++..+|||
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (305)
T cd05609           1 EDFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVM   80 (305)
T ss_pred             CCceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEE
Confidence            3577789999999999999985 4578899999875432   23457899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhh
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~  476 (479)
                      ||+++|+|.++|.....+.++...++..-++.++
T Consensus        81 e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~~l  114 (305)
T cd05609          81 EYVEGGDCATLLKNIGALPVDMARMYFAETVLAL  114 (305)
T ss_pred             ecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            9999999999997655544444444433333333

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.48  E-value=1.9e-14  Score=148.46  Aligned_cols=104  Identities=23%  Similarity=0.418  Sum_probs=88.9

Q ss_pred             CccccccccccCccceEEEE-eCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCC
Q 011696          368 GFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~-~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~  446 (479)
                      .|..-.+||+|.-|.||.+. ..+++.||||++.......++-+++|+.+|+.++|+|||+++.-|+..+++++|||||+
T Consensus       274 ~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVMEym~  353 (550)
T KOG0578|consen  274 KYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVMEYME  353 (550)
T ss_pred             hhcchhhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEEEeecC
Confidence            45556789999999999996 56789999999987766666778999999999999999999999999999999999999


Q ss_pred             CCCHHH------------------------HHhcCCcccchhHHHHHHH
Q 011696          447 NNTLYF------------------------HLHGKWQLGFDIRNHNNGL  471 (479)
Q Consensus       447 ~GsL~~------------------------~L~~~~~~~~~~~~~~~~l  471 (479)
                      +|+|.+                        |||.+.++|+||+..+..|
T Consensus       354 ggsLTDvVt~~~~~E~qIA~Icre~l~aL~fLH~~gIiHrDIKSDnILL  402 (550)
T KOG0578|consen  354 GGSLTDVVTKTRMTEGQIAAICREILQGLKFLHARGIIHRDIKSDNILL  402 (550)
T ss_pred             CCchhhhhhcccccHHHHHHHHHHHHHHHHHHHhcceeeeccccceeEe
Confidence            999943                        6777777888877655443

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.48  E-value=1.3e-13  Score=134.59  Aligned_cols=90  Identities=29%  Similarity=0.468  Sum_probs=76.5

Q ss_pred             CccccccccccCccceEEEEeCC-C---CEEEEEEeecCC-CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          368 GFADQNLLGEGGFGSVYKGYLPD-G---REVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~~-g---~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      +|...++||+|+||.||+|.+.+ +   ..||||+++... ....++|.+|++++++++|+||+++++++.+++..++||
T Consensus         5 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~   84 (269)
T cd05065           5 CVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVMIIT   84 (269)
T ss_pred             HeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceEEEE
Confidence            35667899999999999998643 3   359999987543 233468999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcC
Q 011696          443 DYVPNNTLYFHLHGK  457 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~  457 (479)
                      ||+.+|+|.++++.+
T Consensus        85 e~~~~~~L~~~l~~~   99 (269)
T cd05065          85 EFMENGALDSFLRQN   99 (269)
T ss_pred             ecCCCCcHHHHHhhC
Confidence            999999999998754

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.48  E-value=2e-13  Score=133.35  Aligned_cols=84  Identities=26%  Similarity=0.447  Sum_probs=71.1

Q ss_pred             cccccCccceEEEEeCCC---CEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCCC
Q 011696          374 LLGEGGFGSVYKGYLPDG---REVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNT  449 (479)
Q Consensus       374 ~IG~G~fG~Vykg~~~~g---~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~Gs  449 (479)
                      .||+|+||+||+|...++   ..|+||.++.... ...++|++|++++++++|+||++++|+|.+.+..+|||||+.+|+
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~~g~   81 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPLGD   81 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCCCCc
Confidence            589999999999975443   4688888764433 234579999999999999999999999999999999999999999


Q ss_pred             HHHHHhcC
Q 011696          450 LYFHLHGK  457 (479)
Q Consensus       450 L~~~L~~~  457 (479)
                      |.++|+..
T Consensus        82 L~~~l~~~   89 (269)
T cd05042          82 LKNYLRSN   89 (269)
T ss_pred             HHHHHHhc
Confidence            99998764

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.48  E-value=1.7e-13  Score=138.15  Aligned_cols=111  Identities=19%  Similarity=0.192  Sum_probs=85.5

Q ss_pred             CccccccccccCccceEEEEeC-CCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCC-CCccceEEEEEeCCeEEEEE
Q 011696          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHH-RHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~H-pNIv~LlG~~~~~~~~~LV~  442 (479)
                      +|...++||+|+||+||+|+.. +++.||||+++...   ..+.+.+.+|+++|..++| .+|+++++++.+.+..||||
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVM   80 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEE
Confidence            4667789999999999999864 56789999997432   2344578999999999976 56888999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||+.+|+|.++++.+..+.+.....+..-++.++.|
T Consensus        81 E~~~~g~L~~~~~~~~~~~~~~~~~~~~qi~~al~~  116 (324)
T cd05587          81 EYVNGGDLMYHIQQVGKFKEPHAVFYAAEIAIGLFF  116 (324)
T ss_pred             cCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999998776655555544444444444443

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.48  E-value=2.4e-13  Score=131.47  Aligned_cols=98  Identities=20%  Similarity=0.318  Sum_probs=81.1

Q ss_pred             CccccccccccCccceEEEEe-CCCCEEEEEEeecCC--CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      +|...++||+|+||.||.+.. .+++.|++|.+....  ....++|.+|+++|++++|+||+++++++.+.+..++||||
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e~   80 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEY   80 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEEe
Confidence            366778999999999998874 468899999986443  34456799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCcccchhH
Q 011696          445 VPNNTLYFHLHGKWQLGFDIR  465 (479)
Q Consensus       445 ~~~GsL~~~L~~~~~~~~~~~  465 (479)
                      |.+|+|.+++..++...+++.
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~  101 (256)
T cd08221          81 ANGGTLYDKIVRQKGQLFEEE  101 (256)
T ss_pred             cCCCcHHHHHHhccccCCCHH
Confidence            999999999987543333333

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.47  E-value=1.6e-13  Score=138.60  Aligned_cols=110  Identities=15%  Similarity=0.210  Sum_probs=84.4

Q ss_pred             CccccccccccCccceEEEEe-CCCCEEEEEEeecCC--CcchHhHHHHHHHHHhCCCCCccceEEEEEeCC-----eEE
Q 011696          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDD-----RRL  439 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~-----~~~  439 (479)
                      +|...++||+|+||.||+|+. .+|+.||||+++...  ..+..+|++|+++|++++|+||++++++|...+     ..|
T Consensus         1 ry~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~   80 (338)
T cd07859           1 RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIY   80 (338)
T ss_pred             CeEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEE
Confidence            366778999999999999985 468899999987432  233457999999999999999999999987543     478


Q ss_pred             EEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          440 LIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||||||. |+|.+++..+..+.++....+..-++.++.|
T Consensus        81 lv~e~~~-~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~  118 (338)
T cd07859          81 VVFELME-SDLHQVIKANDDLTPEHHQFFLYQLLRALKY  118 (338)
T ss_pred             EEEecCC-CCHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence            9999995 6899888766655555555554444454444

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.47  E-value=1.4e-13  Score=137.34  Aligned_cols=99  Identities=25%  Similarity=0.375  Sum_probs=80.8

Q ss_pred             cCccccccccccCccceEEEEeC------CCCEEEEEEeecCCC-cchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGG-QGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRR  438 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~------~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~  438 (479)
                      ++|...++||+|+||.||++...      .+..||||+++.... ...+.|.+|+++|+++ +|+||++++|+|...+..
T Consensus        35 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~  114 (302)
T cd05055          35 NNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIGGPI  114 (302)
T ss_pred             HHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecCCce
Confidence            46888899999999999999741      245799999875433 3345799999999999 899999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCCcccchhH
Q 011696          439 LLIYDYVPNNTLYFHLHGKWQLGFDIR  465 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~~~~~~~~~  465 (479)
                      +|||||+.+|+|.++++.+....++++
T Consensus       115 ~lv~e~~~~~~L~~~i~~~~~~~l~~~  141 (302)
T cd05055         115 LVITEYCCYGDLLNFLRRKRESFLTLE  141 (302)
T ss_pred             EEEEEcCCCCcHHHHHHhCCCCCCCHH
Confidence            999999999999999986544223443

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.47  E-value=2.7e-13  Score=134.90  Aligned_cols=91  Identities=18%  Similarity=0.348  Sum_probs=80.8

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      .+|...+.||+|+||.||+|.. .+++.|+||.+........+.|.+|+++|++++|+||++++++|..++..+|||||+
T Consensus        20 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~e~~   99 (296)
T cd06654          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL   99 (296)
T ss_pred             cceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEeeccc
Confidence            4567778899999999999984 568899999998666556678999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcC
Q 011696          446 PNNTLYFHLHGK  457 (479)
Q Consensus       446 ~~GsL~~~L~~~  457 (479)
                      .+|+|.++++++
T Consensus       100 ~~~~L~~~~~~~  111 (296)
T cd06654         100 AGGSLTDVVTET  111 (296)
T ss_pred             CCCCHHHHHHhc
Confidence            999999998754

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.47  E-value=2.1e-13  Score=134.08  Aligned_cols=90  Identities=33%  Similarity=0.591  Sum_probs=76.2

Q ss_pred             CccccccccccCccceEEEEeCC------CCEEEEEEeecCCCc-chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEE
Q 011696          368 GFADQNLLGEGGFGSVYKGYLPD------GREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~~------g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~L  440 (479)
                      +|...+.||+|+||.||+|.+.+      ++.|+||.++..... ..++|.+|+++|.+++|+||++++|+|...+..++
T Consensus         6 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~   85 (283)
T cd05048           6 AVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPTCM   85 (283)
T ss_pred             HcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCCceEE
Confidence            46667889999999999998532      257999998754433 34579999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcC
Q 011696          441 IYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~  457 (479)
                      ||||+.+|+|.++|+..
T Consensus        86 ~~e~~~~~~L~~~l~~~  102 (283)
T cd05048          86 LFEYLAHGDLHEFLVRN  102 (283)
T ss_pred             EEecCCCCcHHHHHHhc
Confidence            99999999999999753

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.47  E-value=1.8e-13  Score=134.78  Aligned_cols=91  Identities=27%  Similarity=0.514  Sum_probs=78.8

Q ss_pred             cCccccccccccCccceEEEEeC------CCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~------~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~L  440 (479)
                      ++|...++||+|+||+||++...      ++..||+|.++.......++|.+|+++|++++|+||++++|+|.+.+..+|
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   84 (280)
T cd05092           5 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTEGRPLLM   84 (280)
T ss_pred             HhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEecCCceEE
Confidence            45666789999999999999642      355799999876655556789999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcC
Q 011696          441 IYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~  457 (479)
                      ||||+.+|+|.++++..
T Consensus        85 v~e~~~~~~L~~~i~~~  101 (280)
T cd05092          85 VFEYMRHGDLNRFLRSH  101 (280)
T ss_pred             EEecCCCCCHHHHHHhc
Confidence            99999999999999754

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.47  E-value=1.5e-13  Score=134.90  Aligned_cols=92  Identities=24%  Similarity=0.420  Sum_probs=78.1

Q ss_pred             hcCccccccccccCccceEEEEeCC-----CCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEe-CCeE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLPD-----GREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCIS-DDRR  438 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~~-----g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~-~~~~  438 (479)
                      .++|...++||+|+||.||+|...+     ++.|++|+++.... ...++|.+|+++|++|+|+||++++|+|.. ++..
T Consensus         5 ~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~   84 (280)
T cd05043           5 RDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGEPP   84 (280)
T ss_pred             hhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCC
Confidence            4567888999999999999998755     67899999875433 334579999999999999999999999887 4677


Q ss_pred             EEEEecCCCCCHHHHHhcC
Q 011696          439 LLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~  457 (479)
                      ++++||+.+|+|.++|...
T Consensus        85 ~~~~~~~~~~~L~~~l~~~  103 (280)
T cd05043          85 FVLYPYMNWGNLKLFLQQC  103 (280)
T ss_pred             EEEEEcCCCCcHHHHHHhc
Confidence            8999999999999998753

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.47  E-value=2.5e-13  Score=132.28  Aligned_cols=100  Identities=25%  Similarity=0.369  Sum_probs=82.9

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      .+|...++||+|+||.||+|.+. +++.||+|+++.. ..+.++|.+|+++|.+++|+||++++++|..++..++||||+
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   84 (263)
T cd05052           6 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFM   84 (263)
T ss_pred             HHeEEeeecCCcccceEEEEEEecCCceEEEEEecCC-chHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEEEEeC
Confidence            34667789999999999999864 5788999998743 334568999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCcccchhHHH
Q 011696          446 PNNTLYFHLHGKWQLGFDIRNH  467 (479)
Q Consensus       446 ~~GsL~~~L~~~~~~~~~~~~~  467 (479)
                      .+|+|.++++......+++...
T Consensus        85 ~~~~L~~~~~~~~~~~l~~~~~  106 (263)
T cd05052          85 TYGNLLDYLRECNRQEVNAVVL  106 (263)
T ss_pred             CCCcHHHHHHhCCCCCCCHHHH
Confidence            9999999997654434444433

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.47  E-value=2.5e-13  Score=131.37  Aligned_cols=89  Identities=28%  Similarity=0.549  Sum_probs=78.4

Q ss_pred             CccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCC
Q 011696          368 GFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~  447 (479)
                      +|...+.||+|+||.||+|.+.+++.+|||.++... ....+|.+|+++|++++|+||+++++++......++||||+.+
T Consensus         5 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~   83 (256)
T cd05112           5 ELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGA-MSEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFMEH   83 (256)
T ss_pred             HeEEEeeecCcccceEEEEEEeCCCeEEEEECCCCC-CCHHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEEEcCCC
Confidence            466678899999999999988778899999886432 3356799999999999999999999999999999999999999


Q ss_pred             CCHHHHHhcC
Q 011696          448 NTLYFHLHGK  457 (479)
Q Consensus       448 GsL~~~L~~~  457 (479)
                      |+|.++++.+
T Consensus        84 ~~L~~~~~~~   93 (256)
T cd05112          84 GCLSDYLRAQ   93 (256)
T ss_pred             CcHHHHHHhC
Confidence            9999999764

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.47  E-value=1.6e-13  Score=135.81  Aligned_cols=91  Identities=27%  Similarity=0.501  Sum_probs=78.4

Q ss_pred             cCccccccccccCccceEEEEeC------CCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~------~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~L  440 (479)
                      ++|...+.||+|+||.||+|...      +++.|++|.++.......++|.+|+++|++++|+||++++|+|...+..+|
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   84 (291)
T cd05094           5 RDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIM   84 (291)
T ss_pred             HHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCceEE
Confidence            34677789999999999999742      345689999876555556789999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcC
Q 011696          441 IYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~  457 (479)
                      ||||+.+|+|.++++..
T Consensus        85 v~e~~~~~~L~~~i~~~  101 (291)
T cd05094          85 VFEYMKHGDLNKFLRAH  101 (291)
T ss_pred             EEecCCCCcHHHHHHhc
Confidence            99999999999999753

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.47  E-value=1.8e-13  Score=138.07  Aligned_cols=107  Identities=24%  Similarity=0.361  Sum_probs=79.6

Q ss_pred             ccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHH---HhCCCCCccceEEEEEeCCeEEEE
Q 011696          369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEII---SRIHHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il---~~l~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      |...++||+|+||+||+|.. .+|+.||||+++...   ....+.+.+|++++   ++++|+||++++|++.+.+..|||
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv   80 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFV   80 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEE
Confidence            44568899999999999986 468899999997432   22334577776655   567899999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhh
Q 011696          442 YDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~  476 (479)
                      ||||.+|+|..+++++ .+.++....+..-++.++
T Consensus        81 ~E~~~~~~L~~~~~~~-~l~~~~~~~~~~qi~~al  114 (324)
T cd05589          81 MEYAAGGDLMMHIHTD-VFSEPRAVFYAACVVLGL  114 (324)
T ss_pred             EcCCCCCcHHHHhhcC-CCCHHHHHHHHHHHHHHH
Confidence            9999999999888753 334444444433333333

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.47  E-value=1.4e-13  Score=135.01  Aligned_cols=92  Identities=25%  Similarity=0.408  Sum_probs=78.1

Q ss_pred             hcCccccccccccCccceEEEEeC------CCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRR  438 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~------~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~  438 (479)
                      .++|...+.||+|+||.||+|.+.      .++.||||+++.... ....+|.+|+.++++++|+||++++++|.+++..
T Consensus         5 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~   84 (277)
T cd05062           5 REKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPT   84 (277)
T ss_pred             HHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCe
Confidence            456888899999999999998752      245799999864332 3345799999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcC
Q 011696          439 LLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~  457 (479)
                      +|||||+.+|+|.++++..
T Consensus        85 ~lv~e~~~~~~L~~~~~~~  103 (277)
T cd05062          85 LVIMELMTRGDLKSYLRSL  103 (277)
T ss_pred             EEEEecCCCCCHHHHHHHc
Confidence            9999999999999999753

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.47  E-value=2.3e-13  Score=134.49  Aligned_cols=90  Identities=26%  Similarity=0.376  Sum_probs=76.5

Q ss_pred             ccccccccccCccceEEEEe-CCCCEEEEEEeecCCC---cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      |...++||+|+||+||+|.. .+|+.||||+++....   ...+.|.+|+++|++++|.||+.++++|..++..++||||
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTI   81 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEEe
Confidence            55668899999999999986 4688999999964332   2234588999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCC
Q 011696          445 VPNNTLYFHLHGKW  458 (479)
Q Consensus       445 ~~~GsL~~~L~~~~  458 (479)
                      +.+|+|.++++...
T Consensus        82 ~~~~~L~~~~~~~~   95 (285)
T cd05632          82 MNGGDLKFHIYNMG   95 (285)
T ss_pred             ccCccHHHHHHHhc
Confidence            99999998887543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.47  E-value=1.4e-13  Score=140.14  Aligned_cols=91  Identities=31%  Similarity=0.481  Sum_probs=75.5

Q ss_pred             cCccccccccccCccceEEEEe------CCCCEEEEEEeecCCCc-chHhHHHHHHHHHhC-CCCCccceEEEEEeCC-e
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL------PDGREVAIKQLKIGGGQ-GEREFKAEVEIISRI-HHRHLVSLVGYCISDD-R  437 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~------~~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~-~  437 (479)
                      ++|...++||+|+||+||+|..      .+++.||||+++..... ..+++.+|+++|.++ +|+||++++|+|...+ .
T Consensus         7 ~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~   86 (343)
T cd05103           7 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGP   86 (343)
T ss_pred             hHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCCCc
Confidence            4577789999999999999973      34678999999754432 345799999999999 7899999999987654 5


Q ss_pred             EEEEEecCCCCCHHHHHhcC
Q 011696          438 RLLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       438 ~~LV~Ey~~~GsL~~~L~~~  457 (479)
                      .+||||||.+|+|.++++.+
T Consensus        87 ~~lv~ey~~~g~L~~~i~~~  106 (343)
T cd05103          87 LMVIVEFCKFGNLSNYLRSK  106 (343)
T ss_pred             eEEEEeccCCCcHHHHHHhc
Confidence            78999999999999999754

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.47  E-value=2.1e-13  Score=137.37  Aligned_cols=106  Identities=24%  Similarity=0.326  Sum_probs=82.6

Q ss_pred             ccccccCccceEEEEeC-CCCEEEEEEeecCC---CcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEEEEecCCC
Q 011696          373 NLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYDYVPN  447 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~LV~Ey~~~  447 (479)
                      ++||+|+||+||+|+.. +++.||||+++...   ....+.+.+|+++|..+ +|+||+++++++.+.+..|||||||.+
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~   80 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNG   80 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCC
Confidence            46999999999999864 57899999997432   23345688999999877 799999999999999999999999999


Q ss_pred             CCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          448 NTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       448 GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |+|.++++....+..+....+..-++.++.|
T Consensus        81 g~L~~~i~~~~~l~~~~~~~~~~ql~~~L~~  111 (320)
T cd05590          81 GDLMFHIQKSRRFDEARARFYAAEITSALMF  111 (320)
T ss_pred             chHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            9999998876655554444444444444433

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.47  E-value=2.6e-13  Score=136.79  Aligned_cols=106  Identities=23%  Similarity=0.356  Sum_probs=80.3

Q ss_pred             ccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHH-HHHhCCCCCccceEEEEEeCCeEEEEEecCCC
Q 011696          373 NLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVE-IISRIHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~-il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~  447 (479)
                      ++||+|+||+||+|+. .+|+.||||++....   ....+++++|.. ++++++|+||++++++|.+.+..+||||||.+
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCC
Confidence            4699999999999986 468899999996432   223345666655 56789999999999999999999999999999


Q ss_pred             CCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          448 NTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       448 GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |+|.++++.+..+.++....+..-++.++.|
T Consensus        81 g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~  111 (323)
T cd05575          81 GELFFHLQRERSFPEPRARFYAAEIASALGY  111 (323)
T ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            9999998876555555444444444444433

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.47  E-value=2e-13  Score=137.67  Aligned_cols=110  Identities=19%  Similarity=0.188  Sum_probs=84.9

Q ss_pred             ccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCC-CCCccceEEEEEeCCeEEEEEe
Q 011696          369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIH-HRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~-HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      |...++||+|+||+||++.. .+|+.||||+++...   ....+.+.+|++++..++ |.+|+++++++.+.+..|||||
T Consensus         2 f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E   81 (323)
T cd05615           2 FNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVME   81 (323)
T ss_pred             ceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEEc
Confidence            56678999999999999985 468899999997432   233456889999999885 5778889999999999999999


Q ss_pred             cCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          444 YVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       444 y~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |+.+|+|.+++.....+.+.....+..-++.++.|
T Consensus        82 y~~~g~L~~~i~~~~~l~~~~~~~i~~qi~~al~~  116 (323)
T cd05615          82 YVNGGDLMYHIQQVGKFKEPQAVFYAAEISVGLFF  116 (323)
T ss_pred             CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999998776655555554444444444443

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.47  E-value=6.7e-14  Score=136.00  Aligned_cols=105  Identities=23%  Similarity=0.378  Sum_probs=81.2

Q ss_pred             ccccccCccceEEEEeCC--------CCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          373 NLLGEGGFGSVYKGYLPD--------GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~~--------g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      +.||+|+||.||+|...+        ...|++|.+........++|.+|+++|++++|+||++++|+|..++..+|||||
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   80 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQEY   80 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEEec
Confidence            469999999999997532        234888887654444456799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCC-cccchhHHHHHHHHHHhhc
Q 011696          445 VPNNTLYFHLHGKW-QLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       445 ~~~GsL~~~L~~~~-~~~~~~~~~~~~l~~~~~~  477 (479)
                      +.+|+|.++|+.+. .+.+++...+..-+..++.
T Consensus        81 ~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~  114 (258)
T cd05078          81 VKFGSLDTYLKKNKNLINISWKLEVAKQLAWALH  114 (258)
T ss_pred             CCCCcHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence            99999999998643 3455555444444444333

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=99.46  E-value=6.5e-14  Score=143.65  Aligned_cols=117  Identities=20%  Similarity=0.241  Sum_probs=98.9

Q ss_pred             HHHhcCccccccccccCccceEEEE-eCCCCEEEEEEeecCC---CcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCe
Q 011696          363 VKATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGG---GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDR  437 (479)
Q Consensus       363 ~~~~~~f~~~~~IG~G~fG~Vykg~-~~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~  437 (479)
                      .+..++|.++++||+|.|.+||+++ ...++++|||+|...-   ....+...+|-++|.+| +|+.||+|+..|.++..
T Consensus        69 kk~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~s  148 (604)
T KOG0592|consen   69 KKTPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEES  148 (604)
T ss_pred             cCChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccc
Confidence            3345679999999999999999997 4568899999985332   22234578899999999 99999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          438 RLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       438 ~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      +|+|+||++||+|.+||+..+.+...+...+...++.++.||
T Consensus       149 LYFvLe~A~nGdll~~i~K~Gsfde~caR~YAAeIldAleyl  190 (604)
T KOG0592|consen  149 LYFVLEYAPNGDLLDLIKKYGSFDETCARFYAAEILDALEYL  190 (604)
T ss_pred             eEEEEEecCCCcHHHHHHHhCcchHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998888888888888888888887775

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.46  E-value=2.4e-13  Score=136.79  Aligned_cols=106  Identities=20%  Similarity=0.263  Sum_probs=80.3

Q ss_pred             ccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEEEEecCCC
Q 011696          373 NLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYDYVPN  447 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~LV~Ey~~~  447 (479)
                      ++||+|+||+||+|+. .+++.||||+++...   ..+.+.+..|.+++..+ +|+||+++++++..++..+|||||+.+
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~g   80 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            4699999999999986 457889999997432   23344567777777754 899999999999999999999999999


Q ss_pred             CCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          448 NTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       448 GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |+|.++++.+..+.++....+..-++.++.|
T Consensus        81 g~L~~~~~~~~~~~~~~~~~~~~qi~~al~~  111 (316)
T cd05592          81 GDLMFHIQSSGRFDEARARFYAAEIICGLQF  111 (316)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            9999998766555554444444434444433

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.46  E-value=1.7e-13  Score=137.71  Aligned_cols=91  Identities=20%  Similarity=0.313  Sum_probs=80.1

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcc-hHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQG-EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~-~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      +.|...++||.|..++||+|++ ..++.||||+++.+...+ .+++++|+..|+-++|+|||+++..|..++.+++||-|
T Consensus        26 ~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~LWvVmpf  105 (516)
T KOG0582|consen   26 KDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVDSELWVVMPF  105 (516)
T ss_pred             cceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEecceeEEeehh
Confidence            5677789999999999999974 567999999998655444 47899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcC
Q 011696          445 VPNNTLYFHLHGK  457 (479)
Q Consensus       445 ~~~GsL~~~L~~~  457 (479)
                      |.+|++++++...
T Consensus       106 Ma~GS~ldIik~~  118 (516)
T KOG0582|consen  106 MAGGSLLDIIKTY  118 (516)
T ss_pred             hcCCcHHHHHHHH
Confidence            9999998776653

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.46  E-value=3.1e-13  Score=131.14  Aligned_cols=103  Identities=20%  Similarity=0.309  Sum_probs=80.4

Q ss_pred             cccccCccceEEEEe---CCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCC
Q 011696          374 LLGEGGFGSVYKGYL---PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNN  448 (479)
Q Consensus       374 ~IG~G~fG~Vykg~~---~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~G  448 (479)
                      .||+|+||.||+|.+   .+++.||||+++....  ...++|.+|+++|++++|+||++++|+|. ++..+|||||+.+|
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-~~~~~lv~e~~~~~   80 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICE-AESWMLVMELAELG   80 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEc-CCCcEEEEecCCCC
Confidence            589999999999975   3567899999864432  23457999999999999999999999985 55678999999999


Q ss_pred             CHHHHHhcCCcccchhHHHHHHHHHHhhc
Q 011696          449 TLYFHLHGKWQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       449 sL~~~L~~~~~~~~~~~~~~~~l~~~~~~  477 (479)
                      +|.+++..+..+.+++..++..-++.++.
T Consensus        81 ~L~~~l~~~~~~~~~~~~~i~~qi~~al~  109 (257)
T cd05116          81 PLNKFLQKNKHVTEKNITELVHQVSMGMK  109 (257)
T ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            99999976655555555555444444443

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.46  E-value=5e-14  Score=144.73  Aligned_cols=79  Identities=22%  Similarity=0.465  Sum_probs=70.2

Q ss_pred             cccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCCCHH
Q 011696          372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLY  451 (479)
Q Consensus       372 ~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~GsL~  451 (479)
                      .+-||.|+.|.||+|.+ .++.||||+++..       -..||+.|++|+|+||+.|.|||...-.+|||||||..|.|+
T Consensus       129 LeWlGSGaQGAVF~Grl-~netVAVKKV~el-------kETdIKHLRkLkH~NII~FkGVCtqsPcyCIiMEfCa~GqL~  200 (904)
T KOG4721|consen  129 LEWLGSGAQGAVFLGRL-HNETVAVKKVREL-------KETDIKHLRKLKHPNIITFKGVCTQSPCYCIIMEFCAQGQLY  200 (904)
T ss_pred             hhhhccCcccceeeeec-cCceehhHHHhhh-------hhhhHHHHHhccCcceeeEeeeecCCceeEEeeeccccccHH
Confidence            36699999999999999 6789999988632       235789999999999999999999999999999999999999


Q ss_pred             HHHhcCC
Q 011696          452 FHLHGKW  458 (479)
Q Consensus       452 ~~L~~~~  458 (479)
                      +.|+.++
T Consensus       201 ~VLka~~  207 (904)
T KOG4721|consen  201 EVLKAGR  207 (904)
T ss_pred             HHHhccC
Confidence            9998654

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.46  E-value=3.5e-13  Score=129.87  Aligned_cols=90  Identities=32%  Similarity=0.559  Sum_probs=77.9

Q ss_pred             cccccccccCccceEEEEeCC-----CCEEEEEEeecCCCc-chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          370 ADQNLLGEGGFGSVYKGYLPD-----GREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       370 ~~~~~IG~G~fG~Vykg~~~~-----g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      ...+.||+|+||.||++...+     ++.||+|+++..... ..+.|.+|+++|.+++|+||++++++|.+.+..++|||
T Consensus         2 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i~e   81 (258)
T smart00219        2 TLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVME   81 (258)
T ss_pred             cccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEEEe
Confidence            456789999999999998643     378999999755443 56689999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCc
Q 011696          444 YVPNNTLYFHLHGKWQ  459 (479)
Q Consensus       444 y~~~GsL~~~L~~~~~  459 (479)
                      |+.+|+|.++++....
T Consensus        82 ~~~~~~l~~~~~~~~~   97 (258)
T smart00219       82 YMEGGDLLDYLRKNRP   97 (258)
T ss_pred             ccCCCCHHHHHHhhhh
Confidence            9999999999986543

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.46  E-value=3e-13  Score=132.63  Aligned_cols=91  Identities=30%  Similarity=0.483  Sum_probs=76.7

Q ss_pred             CccccccccccCccceEEEEeC-----CCCEEEEEEeecCCCc-chHhHHHHHHHHHhCCCCCccceEEEEEe--CCeEE
Q 011696          368 GFADQNLLGEGGFGSVYKGYLP-----DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCIS--DDRRL  439 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~-----~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~LlG~~~~--~~~~~  439 (479)
                      .|...+.||+|+||.||++++.     +++.||||.++..... ..++|.+|++++++++|+||++++++|..  .+..+
T Consensus         5 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~~   84 (284)
T cd05038           5 HLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSLR   84 (284)
T ss_pred             hchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCceE
Confidence            3555688999999999999863     3578999999755443 45689999999999999999999999987  55789


Q ss_pred             EEEecCCCCCHHHHHhcCC
Q 011696          440 LIYDYVPNNTLYFHLHGKW  458 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~~  458 (479)
                      |||||+.+|+|.++++...
T Consensus        85 lv~e~~~~~~l~~~l~~~~  103 (284)
T cd05038          85 LIMEYLPSGSLRDYLQRHR  103 (284)
T ss_pred             EEEecCCCCCHHHHHHhCc
Confidence            9999999999999998643

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.46  E-value=2.2e-13  Score=132.91  Aligned_cols=113  Identities=23%  Similarity=0.377  Sum_probs=85.1

Q ss_pred             HhcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhC-CCCCccceEEEEEeC------C
Q 011696          365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCISD------D  436 (479)
Q Consensus       365 ~~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~------~  436 (479)
                      +.+.|...+.||+|+||+||+|.. .+++.||||+++... ....++.+|+.+|.++ +|+||++++|+|...      +
T Consensus         4 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~   82 (272)
T cd06637           4 PAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDD   82 (272)
T ss_pred             hhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCC-ccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCCc
Confidence            445677778899999999999986 457889999986443 3456799999999999 799999999999763      3


Q ss_pred             eEEEEEecCCCCCHHHHHhcCC--cccchhHHHHHHHHHHhhcc
Q 011696          437 RRLLIYDYVPNNTLYFHLHGKW--QLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       437 ~~~LV~Ey~~~GsL~~~L~~~~--~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ..+|||||+.+|+|.++++..+  .+.+++...+..-++.++.|
T Consensus        83 ~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~  126 (272)
T cd06637          83 QLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSH  126 (272)
T ss_pred             EEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHH
Confidence            5789999999999999988644  33444444443334444333

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.46  E-value=3.8e-13  Score=130.24  Aligned_cols=91  Identities=22%  Similarity=0.406  Sum_probs=81.3

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      ++|...+.||+|+||.||+|.. .+++.++||.+........+++.+|+++|++++|+||++++|++.+++..+|||||+
T Consensus         3 ~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e~~   82 (262)
T cd06613           3 EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVMEYC   82 (262)
T ss_pred             cceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEeCC
Confidence            5677889999999999999986 457789999998665556678999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcC
Q 011696          446 PNNTLYFHLHGK  457 (479)
Q Consensus       446 ~~GsL~~~L~~~  457 (479)
                      .+++|.++++..
T Consensus        83 ~~~~l~~~~~~~   94 (262)
T cd06613          83 GGGSLQDIYQVT   94 (262)
T ss_pred             CCCcHHHHHHhh
Confidence            999999988765

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.46  E-value=3.7e-13  Score=131.17  Aligned_cols=90  Identities=27%  Similarity=0.477  Sum_probs=76.4

Q ss_pred             cCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~  446 (479)
                      ++|...++||+|+||.||+|.+.++..||||+++... ...++|.+|++++++++|+||+++++++. .+..++||||+.
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~~~   83 (262)
T cd05071           6 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVTEYMS   83 (262)
T ss_pred             HHeeEeeecCCCCCCcEEEEEecCCceEEEEecccCc-cCHHHHHHHHHHHHhCCCCCcceEEEEEC-CCCcEEEEEcCC
Confidence            4577788999999999999988777789999997432 23467999999999999999999999874 456789999999


Q ss_pred             CCCHHHHHhcCC
Q 011696          447 NNTLYFHLHGKW  458 (479)
Q Consensus       447 ~GsL~~~L~~~~  458 (479)
                      +|+|.++++...
T Consensus        84 ~~~L~~~~~~~~   95 (262)
T cd05071          84 KGSLLDFLKGEM   95 (262)
T ss_pred             CCcHHHHHhhcc
Confidence            999999998643

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.46  E-value=2.5e-13  Score=134.13  Aligned_cols=90  Identities=24%  Similarity=0.468  Sum_probs=78.0

Q ss_pred             cCccccccccccCccceEEEEeC------CCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL  439 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~------~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~  439 (479)
                      ++|...+.||+|+||.||++...      +++.||||+++.... ...++|.+|+++|++++|+||++++|+|.+++..+
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~~~~   84 (288)
T cd05050           5 NNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVGKPMC   84 (288)
T ss_pred             HhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCccE
Confidence            56777889999999999999853      456899999875433 33467999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhc
Q 011696          440 LIYDYVPNNTLYFHLHG  456 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~  456 (479)
                      |||||+.+|+|.++++.
T Consensus        85 lv~e~~~~~~L~~~l~~  101 (288)
T cd05050          85 LLFEYMAYGDLNEFLRH  101 (288)
T ss_pred             EEEecCCCCCHHHHHHH
Confidence            99999999999999974

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.46  E-value=2.8e-13  Score=136.49  Aligned_cols=111  Identities=18%  Similarity=0.181  Sum_probs=85.1

Q ss_pred             CccccccccccCccceEEEEeC-CCCEEEEEEeecCC---CcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEEEE
Q 011696          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      +|...++||+|+||+||+|+.. +++.||||.++...   ....+++..|++++..+ +|+||++++++|.+.+..+|||
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVM   80 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEE
Confidence            4667789999999999999864 57799999997432   22334678888888887 6899999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||.+|+|.++++....+.++....+..-++.++.|
T Consensus        81 E~~~~g~L~~~~~~~~~~~~~~~~~~~~qi~~aL~~  116 (323)
T cd05616          81 EYVNGGDLMYQIQQVGRFKEPHAVFYAAEIAIGLFF  116 (323)
T ss_pred             cCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999998766555555444444444444433

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.46  E-value=3.3e-13  Score=134.28  Aligned_cols=109  Identities=15%  Similarity=0.275  Sum_probs=87.9

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      .+|...+.||.|+||.||+|+. .+|+.|+||.+........+.|.+|++++++++|+||++++|+|..++..++||||+
T Consensus        19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   98 (296)
T cd06655          19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVMEYL   98 (296)
T ss_pred             ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEEec
Confidence            4577788999999999999984 578899999997665555678999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCcccchhHHHHHHHHHHhh
Q 011696          446 PNNTLYFHLHGKWQLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       446 ~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~  476 (479)
                      .+|+|.+++..+. +.++...++..-++.++
T Consensus        99 ~~~~L~~~~~~~~-l~~~~~~~i~~~l~~al  128 (296)
T cd06655          99 AGGSLTDVVTETC-MDEAQIAAVCRECLQAL  128 (296)
T ss_pred             CCCcHHHHHHhcC-CCHHHHHHHHHHHHHHH
Confidence            9999999887542 34444444333333333

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.45  E-value=2.7e-13  Score=132.00  Aligned_cols=90  Identities=19%  Similarity=0.366  Sum_probs=77.7

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC---cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||.||+|.. .+|+.|+||.++....   ...++|.+|+++|++++|+||++++++|.+++..++||
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL   81 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEE
Confidence            3567778999999999999985 5788999998864332   23357999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhc
Q 011696          443 DYVPNNTLYFHLHG  456 (479)
Q Consensus       443 Ey~~~GsL~~~L~~  456 (479)
                      ||+.+|+|.++++.
T Consensus        82 e~~~~~~L~~~~~~   95 (267)
T cd08229          82 ELADAGDLSRMIKH   95 (267)
T ss_pred             EecCCCCHHHHHHH
Confidence            99999999998863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.45  E-value=3.9e-13  Score=134.58  Aligned_cols=90  Identities=27%  Similarity=0.393  Sum_probs=78.8

Q ss_pred             CccccccccccCccceEEEEeC-CCCEEEEEEeecCCCc---chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ---GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~---~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      +|...++||+|+||.||++... +++.||||.+......   ..++|.+|+++|++++|+||+++++++.+++..+||||
T Consensus         2 ~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   81 (316)
T cd05574           2 HFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVMD   81 (316)
T ss_pred             ceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEEE
Confidence            5777889999999999999864 4889999999754332   34579999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcC
Q 011696          444 YVPNNTLYFHLHGK  457 (479)
Q Consensus       444 y~~~GsL~~~L~~~  457 (479)
                      |+.+|+|.++++..
T Consensus        82 ~~~~~~L~~~~~~~   95 (316)
T cd05574          82 YCPGGELFRLLQRQ   95 (316)
T ss_pred             ecCCCCHHHHHHhC
Confidence            99999999998754

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.45  E-value=3.5e-13  Score=130.29  Aligned_cols=91  Identities=22%  Similarity=0.420  Sum_probs=78.8

Q ss_pred             CccccccccccCccceEEEEe-CCCCEEEEEEeecCC--CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      +|...++||+|+||.||++.. .+|+.||||+++...  ....++|.+|++++++++|+||+++++++.+.+..+|||||
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDY   80 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEec
Confidence            366778999999999999975 468899999997432  23345899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCC
Q 011696          445 VPNNTLYFHLHGKW  458 (479)
Q Consensus       445 ~~~GsL~~~L~~~~  458 (479)
                      +.+|+|.++++.+.
T Consensus        81 ~~~~~l~~~~~~~~   94 (256)
T cd08218          81 CEGGDLYKKINAQR   94 (256)
T ss_pred             CCCCcHHHHHHhcc
Confidence            99999999987644

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.45  E-value=3.7e-13  Score=134.19  Aligned_cols=90  Identities=23%  Similarity=0.427  Sum_probs=76.4

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      ++|...+.||+|+||+||+|+.. +|+.||||+++.... .....+.+|+++|++++|+||+++++++.+++..+|||||
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~   84 (303)
T cd07869           5 DSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVFEY   84 (303)
T ss_pred             ccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEEEEC
Confidence            56778899999999999999864 688999999975433 2334688999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcC
Q 011696          445 VPNNTLYFHLHGK  457 (479)
Q Consensus       445 ~~~GsL~~~L~~~  457 (479)
                      |. |+|.+++..+
T Consensus        85 ~~-~~l~~~~~~~   96 (303)
T cd07869          85 VH-TDLCQYMDKH   96 (303)
T ss_pred             CC-cCHHHHHHhC
Confidence            95 6888777643

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.45  E-value=2.9e-13  Score=135.21  Aligned_cols=91  Identities=27%  Similarity=0.443  Sum_probs=77.2

Q ss_pred             cCccccccccccCccceEEEEeC--------CCCEEEEEEeecCC-CcchHhHHHHHHHHHhC-CCCCccceEEEEEeCC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP--------DGREVAIKQLKIGG-GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDD  436 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~--------~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~  436 (479)
                      ++|...+.||+|+||.||++...        +++.||+|.++... ....++|.+|+++|.++ +|+||++++++|..++
T Consensus        18 ~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~   97 (307)
T cd05098          18 DRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDG   97 (307)
T ss_pred             HHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCC
Confidence            45778899999999999999742        23469999997543 23345799999999999 8999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhcC
Q 011696          437 RRLLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       437 ~~~LV~Ey~~~GsL~~~L~~~  457 (479)
                      ..+|||||+.+|+|.++|+.+
T Consensus        98 ~~~lv~e~~~~~~L~~~i~~~  118 (307)
T cd05098          98 PLYVIVEYASKGNLREYLRAR  118 (307)
T ss_pred             ceEEEEecCCCCcHHHHHHhc
Confidence            999999999999999999864

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.45  E-value=4.7e-13  Score=131.95  Aligned_cols=107  Identities=19%  Similarity=0.307  Sum_probs=87.0

Q ss_pred             hcCccccccccccCccceEEEEeC-CCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      +++|...+.||+|+||.||+|... +++.|++|+++.... ..++|.+|+++|++++|+||++++++|...+..+|||||
T Consensus        18 ~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   96 (286)
T cd06614          18 RELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-NKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVVMEY   96 (286)
T ss_pred             cccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch-hHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEEEec
Confidence            455666788999999999999875 588899999975444 566899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCC-cccchhHHHHHHHHH
Q 011696          445 VPNNTLYFHLHGKW-QLGFDIRNHNNGLLI  473 (479)
Q Consensus       445 ~~~GsL~~~L~~~~-~~~~~~~~~~~~l~~  473 (479)
                      +.+++|.++++.+. .+.++.+..+..-++
T Consensus        97 ~~~~~L~~~l~~~~~~l~~~~~~~i~~~i~  126 (286)
T cd06614          97 MDGGSLTDIITQNFVRMNEPQIAYVCREVL  126 (286)
T ss_pred             cCCCcHHHHHHHhccCCCHHHHHHHHHHHH
Confidence            99999999998754 444444433333333

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.45  E-value=4.7e-13  Score=129.06  Aligned_cols=85  Identities=33%  Similarity=0.600  Sum_probs=75.9

Q ss_pred             ccccccCccceEEEEeCCCCEEEEEEeecCCCc-chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCCCHH
Q 011696          373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLY  451 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~GsL~  451 (479)
                      ++||+|+||.||++.+.+++.|+||+++..... ..++|.+|++++++++|+||++++++|.+.+..++||||+.+++|.
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~   80 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGSLL   80 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCcHH
Confidence            469999999999999867999999998754443 4567999999999999999999999999999999999999999999


Q ss_pred             HHHhcC
Q 011696          452 FHLHGK  457 (479)
Q Consensus       452 ~~L~~~  457 (479)
                      ++++.+
T Consensus        81 ~~l~~~   86 (251)
T cd05041          81 TFLRKK   86 (251)
T ss_pred             HHHHhc
Confidence            999764

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.45  E-value=3.6e-13  Score=136.09  Aligned_cols=106  Identities=18%  Similarity=0.260  Sum_probs=83.7

Q ss_pred             ccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEEEEecCCC
Q 011696          373 NLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYDYVPN  447 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~LV~Ey~~~  447 (479)
                      ++||+|+||+||+|.. .+++.||||+++...   ....+.|.+|+.++.++ +|+||+++++++.+.+..|||||||.+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNG   80 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCC
Confidence            4699999999999986 457889999997542   22345688999999998 699999999999999999999999999


Q ss_pred             CCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          448 NTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       448 GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |+|.+++.....+.++....+..-++.++.|
T Consensus        81 ~~L~~~~~~~~~l~~~~~~~~~~qi~~al~~  111 (327)
T cd05617          81 GDLMFHMQRQRKLPEEHARFYAAEICIALNF  111 (327)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            9999888765555555555554444444444

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.45  E-value=2.6e-13  Score=132.78  Aligned_cols=85  Identities=22%  Similarity=0.400  Sum_probs=70.8

Q ss_pred             ccccccCccceEEEEeCCCC---EEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCC
Q 011696          373 NLLGEGGFGSVYKGYLPDGR---EVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNN  448 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~~g~---~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~G  448 (479)
                      +.||+|+||+||+|.+.++.   .+++|.++.... ...++|.+|++++++++|+||++++|+|.+....+||||||.+|
T Consensus         1 ~~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~   80 (268)
T cd05086           1 QEIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCELG   80 (268)
T ss_pred             CcCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCCCC
Confidence            35999999999999754433   456676654432 34568999999999999999999999999999999999999999


Q ss_pred             CHHHHHhcC
Q 011696          449 TLYFHLHGK  457 (479)
Q Consensus       449 sL~~~L~~~  457 (479)
                      +|.++++..
T Consensus        81 ~L~~~l~~~   89 (268)
T cd05086          81 DLKSYLSQE   89 (268)
T ss_pred             cHHHHHHhh
Confidence            999999853

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.45  E-value=3.8e-13  Score=133.13  Aligned_cols=90  Identities=21%  Similarity=0.382  Sum_probs=76.2

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      ++|...++||+|+||.||+|+. .+++.||||+++.... .....+.+|+++|++++|+||+++++++..++..+|||||
T Consensus         5 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~   84 (288)
T cd07871           5 ETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLVFEY   84 (288)
T ss_pred             ccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEeC
Confidence            4577788999999999999985 4678999999975432 2345788999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcC
Q 011696          445 VPNNTLYFHLHGK  457 (479)
Q Consensus       445 ~~~GsL~~~L~~~  457 (479)
                      +. |+|.+++...
T Consensus        85 ~~-~~l~~~l~~~   96 (288)
T cd07871          85 LD-SDLKQYLDNC   96 (288)
T ss_pred             CC-cCHHHHHHhc
Confidence            98 4898888643

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.45  E-value=3.2e-13  Score=136.27  Aligned_cols=86  Identities=13%  Similarity=0.261  Sum_probs=73.4

Q ss_pred             ccccccc--CccceEEEEe-CCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCC
Q 011696          372 QNLLGEG--GFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (479)
Q Consensus       372 ~~~IG~G--~fG~Vykg~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~  446 (479)
                      .++||+|  +||+||++.. .+|+.||||+++....  ...+.+.+|+++++.++|+|||+++|+|..++..+||||||+
T Consensus         3 ~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~   82 (327)
T cd08227           3 LTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMA   82 (327)
T ss_pred             hhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEeccC
Confidence            4689999  6789999985 5688999999975432  223457789999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcC
Q 011696          447 NNTLYFHLHGK  457 (479)
Q Consensus       447 ~GsL~~~L~~~  457 (479)
                      +|+|.+++...
T Consensus        83 ~~~l~~~~~~~   93 (327)
T cd08227          83 YGSAKDLICTH   93 (327)
T ss_pred             CCcHHHHHHhh
Confidence            99999998653

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.45  E-value=3.3e-13  Score=135.72  Aligned_cols=106  Identities=18%  Similarity=0.280  Sum_probs=83.1

Q ss_pred             ccccccCccceEEEEeC-CCCEEEEEEeecCC---CcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEEEEecCCC
Q 011696          373 NLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYDYVPN  447 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~LV~Ey~~~  447 (479)
                      ++||+|+||+||+|+.. +|+.||||+++...   ..+.+.+..|+++|.++ +|+||+++++++.+++..+||||||.+
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~   80 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCC
Confidence            46999999999999864 57899999997532   23345678888888765 999999999999999999999999999


Q ss_pred             CCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          448 NTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       448 GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |+|.++++.+..+.+.+...+..-++.++.|
T Consensus        81 g~L~~~i~~~~~~~~~~~~~~~~qi~~~l~~  111 (316)
T cd05620          81 GDLMFHIQDKGRFDLYRATFYAAEIVCGLQF  111 (316)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            9999998876655555555554444444444

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.45  E-value=2.2e-13  Score=140.06  Aligned_cols=110  Identities=15%  Similarity=0.122  Sum_probs=86.3

Q ss_pred             CccccccccccCccceEEEEe-CCCCEEEEEEeecCC--CcchHhHHHHHHHHHhCCCCCccceEEEEEeCC-----eEE
Q 011696          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDD-----RRL  439 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~-----~~~  439 (479)
                      +|...++||+|+||+||++.. .+|+.||||++....  ....+++.+|+++|+.++|+||+++++++...+     ..|
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~   80 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIY   80 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEE
Confidence            466778999999999999985 578999999986432  233467999999999999999999999998776     789


Q ss_pred             EEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          440 LIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||+||+. ++|.+++..+..+.++....+..-++.++.|
T Consensus        81 lv~e~~~-~~l~~~~~~~~~l~~~~~~~~~~qi~~aL~~  118 (372)
T cd07853          81 VVTELMQ-SDLHKIIVSPQPLSSDHVKVFLYQILRGLKY  118 (372)
T ss_pred             EEeeccc-cCHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999997 5788888766555555555555555555544

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.45  E-value=3.3e-13  Score=130.22  Aligned_cols=89  Identities=24%  Similarity=0.374  Sum_probs=78.8

Q ss_pred             cCccccccccccCccceEEEEeCC-CCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~-g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      ++|...++||+|+||.||+|...+ ++.|++|.++....  .++|.+|++++++++|+||++++|+|.+++..+|||||+
T Consensus         3 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~   80 (256)
T cd06612           3 EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED--LQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVMEYC   80 (256)
T ss_pred             ccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH--HHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEEecC
Confidence            467778899999999999998754 78999999864322  668999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcC
Q 011696          446 PNNTLYFHLHGK  457 (479)
Q Consensus       446 ~~GsL~~~L~~~  457 (479)
                      .+++|.++++..
T Consensus        81 ~~~~L~~~l~~~   92 (256)
T cd06612          81 GAGSVSDIMKIT   92 (256)
T ss_pred             CCCcHHHHHHhC
Confidence            999999998753

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.45  E-value=3.4e-13  Score=131.42  Aligned_cols=88  Identities=27%  Similarity=0.469  Sum_probs=73.0

Q ss_pred             ccccccccccCccceEEEEeCC----CCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCCe-----
Q 011696          369 FADQNLLGEGGFGSVYKGYLPD----GREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDR-----  437 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~~~----g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~-----  437 (479)
                      |...++||+|+||.||+|.+.+    ++.||||+++....  ...++|.+|+++|++++|+||++++|+|.+.+.     
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   80 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIP   80 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCc
Confidence            4567889999999999998632    36799999975432  334579999999999999999999999977654     


Q ss_pred             -EEEEEecCCCCCHHHHHhc
Q 011696          438 -RLLIYDYVPNNTLYFHLHG  456 (479)
Q Consensus       438 -~~LV~Ey~~~GsL~~~L~~  456 (479)
                       .++||||+.+|+|.++++.
T Consensus        81 ~~~~v~e~~~~~~l~~~l~~  100 (273)
T cd05035          81 KPMVILPFMKHGDLHSFLLY  100 (273)
T ss_pred             ccEEEEeccCCCCHHHHHHH
Confidence             6899999999999988864

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.45  E-value=5.5e-13  Score=128.04  Aligned_cols=109  Identities=22%  Similarity=0.368  Sum_probs=87.7

Q ss_pred             CccccccccccCccceEEEEeC-CCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeC--CeEEEEE
Q 011696          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISD--DRRLLIY  442 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~--~~~~LV~  442 (479)
                      +|...+.||+|+||.||+|... +++.|+||+++....  ...++|.+|++++++++|+||+++++++.+.  +..+|||
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~   80 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFL   80 (260)
T ss_pred             CceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEE
Confidence            3666789999999999999875 688999999875443  3456799999999999999999999999988  8899999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhh
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~  476 (479)
                      ||+.+++|.+++.....+.++...++..-++.++
T Consensus        81 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~l  114 (260)
T cd06606          81 EYVSGGSLSSLLKKFGKLPEPVIRKYTRQILEGL  114 (260)
T ss_pred             EecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            9999999999998765554544444444344433

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.45  E-value=1.8e-13  Score=135.38  Aligned_cols=97  Identities=27%  Similarity=0.358  Sum_probs=79.2

Q ss_pred             HHHHHHHhcCccccccccccCccceEEEEeC------CCCEEEEEEeecCCCc-chHhHHHHHHHHHhCCCCCccceEEE
Q 011696          359 YEELVKATDGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGY  431 (479)
Q Consensus       359 ~eel~~~~~~f~~~~~IG~G~fG~Vykg~~~------~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~LlG~  431 (479)
                      ..||....++|....++-||.||+||+|.|.      |.+.|-||+++....+ ....|+.|..+|..+.|+||+.++|+
T Consensus       276 ~~~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V  355 (563)
T KOG1024|consen  276 LQELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGV  355 (563)
T ss_pred             HHhhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEE
Confidence            4566666777888899999999999999653      3456889998865543 34579999999999999999999999


Q ss_pred             EEeCC-eEEEEEecCCCCCHHHHHh
Q 011696          432 CISDD-RRLLIYDYVPNNTLYFHLH  455 (479)
Q Consensus       432 ~~~~~-~~~LV~Ey~~~GsL~~~L~  455 (479)
                      |+++. .-+++|-|+..|+|..+|.
T Consensus       356 ~ie~~~~P~V~y~~~~~gNLK~FL~  380 (563)
T KOG1024|consen  356 SIEDYATPFVLYPATGVGNLKSFLQ  380 (563)
T ss_pred             EeeccCcceEEEeccCcchHHHHHH
Confidence            98754 4578899999999987765

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.45  E-value=3.4e-13  Score=134.59  Aligned_cols=92  Identities=30%  Similarity=0.594  Sum_probs=76.8

Q ss_pred             cCccccccccccCccceEEEEeC-CCC--EEEEEEeecCCC-cchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGR--EVAIKQLKIGGG-QGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~--~VAVK~l~~~~~-~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      ++|...++||+|+||+||+|.+. +|.  .|++|+++.... ...++|.+|+++|.++ +|+||++++|+|.+++..+||
T Consensus         7 ~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~lv   86 (303)
T cd05088           7 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA   86 (303)
T ss_pred             hhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCceEE
Confidence            46777889999999999999863 454  467887764332 3345799999999999 899999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCC
Q 011696          442 YDYVPNNTLYFHLHGKW  458 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~~  458 (479)
                      |||+.+|+|.++|+.+.
T Consensus        87 ~e~~~~~~L~~~l~~~~  103 (303)
T cd05088          87 IEYAPHGNLLDFLRKSR  103 (303)
T ss_pred             EEeCCCCcHHHHHHhcc
Confidence            99999999999998543

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.45  E-value=5.2e-13  Score=132.10  Aligned_cols=91  Identities=27%  Similarity=0.391  Sum_probs=76.9

Q ss_pred             ccccccccccCccceEEEEe-CCCCEEEEEEeecCCCc---chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ---GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~---~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      |...++||+|+||+||++.. .+++.||||.+......   ..+.+.+|+++|++++|.||+.++++|.+++..+|||||
T Consensus         2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05630           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTL   81 (285)
T ss_pred             ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEEe
Confidence            55668899999999999985 46889999998643322   234588999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCc
Q 011696          445 VPNNTLYFHLHGKWQ  459 (479)
Q Consensus       445 ~~~GsL~~~L~~~~~  459 (479)
                      +.+|+|.++++....
T Consensus        82 ~~g~~L~~~l~~~~~   96 (285)
T cd05630          82 MNGGDLKFHIYHMGE   96 (285)
T ss_pred             cCCCcHHHHHHHhcc
Confidence            999999998875443

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.45  E-value=2e-13  Score=134.35  Aligned_cols=99  Identities=20%  Similarity=0.381  Sum_probs=81.2

Q ss_pred             ccHHHHHHHhcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhC-CCCCccceEEEEEe
Q 011696          357 FTYEELVKATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCIS  434 (479)
Q Consensus       357 ~~~eel~~~~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~  434 (479)
                      +.++++..+.++|...+.||+|+||+||+++. .+++.||||.++.. ....++|.+|+.++.++ +|+||++++|+|..
T Consensus         8 ~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~-~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~   86 (286)
T cd06638           8 IIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPI-HDIDEEIEAEYNILKALSDHPNVVKFYGMYYK   86 (286)
T ss_pred             EEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeeccc-cchHHHHHHHHHHHHHHhcCCCeeeeeeeeee
Confidence            34566666778899999999999999999985 45788999988642 22345789999999999 79999999999853


Q ss_pred             -----CCeEEEEEecCCCCCHHHHHhc
Q 011696          435 -----DDRRLLIYDYVPNNTLYFHLHG  456 (479)
Q Consensus       435 -----~~~~~LV~Ey~~~GsL~~~L~~  456 (479)
                           ++..+|||||+.+|+|.++++.
T Consensus        87 ~~~~~~~~~~lv~e~~~~~~L~~~l~~  113 (286)
T cd06638          87 KDVKNGDQLWLVLELCNGGSVTDLVKG  113 (286)
T ss_pred             cccCCCCeEEEEEeecCCCCHHHHHHH
Confidence                 3457999999999999998763

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.45  E-value=3.7e-13  Score=132.70  Aligned_cols=82  Identities=27%  Similarity=0.401  Sum_probs=70.7

Q ss_pred             ccccCccceEEEEe-CCCCEEEEEEeecCCC---cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCCCH
Q 011696          375 LGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL  450 (479)
Q Consensus       375 IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~GsL  450 (479)
                      ||+|+||+||++.. .+|+.||||++.....   ...+.|.+|+++|++++|+||++++++|..++..+||||||.+|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L   80 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDL   80 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCH
Confidence            79999999999985 4688999999864322   2235688999999999999999999999999999999999999999


Q ss_pred             HHHHhc
Q 011696          451 YFHLHG  456 (479)
Q Consensus       451 ~~~L~~  456 (479)
                      .++++.
T Consensus        81 ~~~~~~   86 (280)
T cd05608          81 RYHIYN   86 (280)
T ss_pred             HHHHHh
Confidence            888754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.44  E-value=3.4e-13  Score=133.94  Aligned_cols=91  Identities=20%  Similarity=0.365  Sum_probs=80.0

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      ++|...+.||+|+||.||+|.. .+++.|+||.++.......+.|.+|+.+|++++|+||++++|+|...+..++||||+
T Consensus        19 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~   98 (293)
T cd06647          19 KKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVMEYL   98 (293)
T ss_pred             hhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEEecC
Confidence            4577778899999999999974 467889999987555555667999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcC
Q 011696          446 PNNTLYFHLHGK  457 (479)
Q Consensus       446 ~~GsL~~~L~~~  457 (479)
                      .+|+|.+++..+
T Consensus        99 ~~~~L~~~~~~~  110 (293)
T cd06647          99 AGGSLTDVVTET  110 (293)
T ss_pred             CCCcHHHHHhhc
Confidence            999999998754

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.44  E-value=3.8e-13  Score=132.37  Aligned_cols=107  Identities=16%  Similarity=0.213  Sum_probs=83.1

Q ss_pred             cccccccccCccceEEEEeC-CCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCC
Q 011696          370 ADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNN  448 (479)
Q Consensus       370 ~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~G  448 (479)
                      ...+.||+|+||+||+|... +++.|++|.+........++|.+|+++|++++|+||++++++|..++..++||||+.+|
T Consensus         8 ~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~~~~   87 (282)
T cd06643           8 EIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGG   87 (282)
T ss_pred             HHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEecCCC
Confidence            34577999999999999864 46778999886555455668999999999999999999999999999999999999999


Q ss_pred             CHHHHHhcCC-cccchhHHHHHHHHHHhh
Q 011696          449 TLYFHLHGKW-QLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       449 sL~~~L~~~~-~~~~~~~~~~~~l~~~~~  476 (479)
                      +|.++++++. .+.++....+..-++.++
T Consensus        88 ~l~~~~~~~~~~l~~~~~~~~~~qi~~~L  116 (282)
T cd06643          88 AVDAVMLELERPLTEPQIRVVCKQTLEAL  116 (282)
T ss_pred             cHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence            9999887532 333443333333333333

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.44  E-value=5.7e-13  Score=130.87  Aligned_cols=89  Identities=21%  Similarity=0.400  Sum_probs=76.6

Q ss_pred             ccccccccccCccceEEEEe-CCCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCC
Q 011696          369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~  446 (479)
                      |...++||+|+||.||+|.. .+++.||||.+..... ...++|.+|++++++++|+||++++|+|.+++..+|||||+.
T Consensus         6 ~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~   85 (277)
T cd06641           6 FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLG   85 (277)
T ss_pred             hhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEEeCC
Confidence            55567899999999999985 4678999998864332 334579999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcC
Q 011696          447 NNTLYFHLHGK  457 (479)
Q Consensus       447 ~GsL~~~L~~~  457 (479)
                      +|+|.++++..
T Consensus        86 ~~~l~~~i~~~   96 (277)
T cd06641          86 GGSALDLLEPG   96 (277)
T ss_pred             CCcHHHHHhcC
Confidence            99999998753

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.44  E-value=4.7e-13  Score=131.00  Aligned_cols=90  Identities=20%  Similarity=0.330  Sum_probs=78.6

Q ss_pred             CccccccccccCccceEEEEe-CCCCEEEEEEeecCC-CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      +|...+.||.|+||.||+|.. .+|+.||||.+.... ....++|.+|++++++++|+||++++++|.++...+||+||+
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~   81 (274)
T cd06609           2 LFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIMEYC   81 (274)
T ss_pred             hhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEEee
Confidence            466678899999999999986 468899999987543 334467999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcC
Q 011696          446 PNNTLYFHLHGK  457 (479)
Q Consensus       446 ~~GsL~~~L~~~  457 (479)
                      .+|+|.++++..
T Consensus        82 ~~~~L~~~~~~~   93 (274)
T cd06609          82 GGGSCLDLLKPG   93 (274)
T ss_pred             CCCcHHHHHhhc
Confidence            999999999865

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.44  E-value=4.9e-13  Score=129.95  Aligned_cols=99  Identities=21%  Similarity=0.345  Sum_probs=81.9

Q ss_pred             cCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~  446 (479)
                      ++|...++||+|+||.||++.+.++..|+||.++.. ....++|.+|+++|++++|.||+++++++.+ +..++||||+.
T Consensus         6 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~v~e~~~   83 (260)
T cd05073           6 ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPG-SMSVEAFLAEANVMKTLQHDKLVKLHAVVTK-EPIYIITEFMA   83 (260)
T ss_pred             cceeEEeEecCccceEEEEEEecCCccEEEEecCCC-hhHHHHHHHHHHHHHhcCCCCcceEEEEEcC-CCeEEEEEeCC
Confidence            567778999999999999999877788999988643 2335679999999999999999999999877 77899999999


Q ss_pred             CCCHHHHHhcCCcccchhHHH
Q 011696          447 NNTLYFHLHGKWQLGFDIRNH  467 (479)
Q Consensus       447 ~GsL~~~L~~~~~~~~~~~~~  467 (479)
                      +|+|.+++.+.....+++...
T Consensus        84 ~~~L~~~~~~~~~~~~~~~~~  104 (260)
T cd05073          84 KGSLLDFLKSDEGSKQPLPKL  104 (260)
T ss_pred             CCcHHHHHHhCCccccCHHHH
Confidence            999999998654434444433

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.44  E-value=5.7e-13  Score=129.39  Aligned_cols=89  Identities=26%  Similarity=0.425  Sum_probs=76.3

Q ss_pred             CccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCC
Q 011696          368 GFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~  447 (479)
                      +|...++||+|+||.||+|...++..||+|.++.... ..++|.+|+++|++++|+||+++++++. .+..+|||||+.+
T Consensus         7 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~~~~   84 (260)
T cd05070           7 SLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTM-SPESFLEEAQIMKKLRHDKLVQLYAVVS-EEPIYIVTEYMSK   84 (260)
T ss_pred             HhhhhheeccccCceEEEEEecCCceeEEEEecCCCC-CHHHHHHHHHHHHhcCCCceEEEEeEEC-CCCcEEEEEecCC
Confidence            4566688999999999999987888899999875333 3567999999999999999999999885 5567899999999


Q ss_pred             CCHHHHHhcCC
Q 011696          448 NTLYFHLHGKW  458 (479)
Q Consensus       448 GsL~~~L~~~~  458 (479)
                      |+|.+++++..
T Consensus        85 ~~L~~~~~~~~   95 (260)
T cd05070          85 GSLLDFLKDGE   95 (260)
T ss_pred             CcHHHHHHhcC
Confidence            99999998644

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.44  E-value=5.8e-13  Score=129.88  Aligned_cols=102  Identities=23%  Similarity=0.417  Sum_probs=80.9

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC-----cchHhHHHHHHHHHhCCCCCccceEEEEEeC--CeE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG-----QGEREFKAEVEIISRIHHRHLVSLVGYCISD--DRR  438 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~-----~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~--~~~  438 (479)
                      .+|...++||+|+||.||+|.. .+|+.|++|+++....     ...+.|.+|+++|++++|+||++++|++.+.  +..
T Consensus         2 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (266)
T cd06651           2 INWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTL   81 (266)
T ss_pred             CCccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEE
Confidence            3677889999999999999985 4688999999864321     2234689999999999999999999998753  567


Q ss_pred             EEEEecCCCCCHHHHHhcCCcccchhHHHH
Q 011696          439 LLIYDYVPNNTLYFHLHGKWQLGFDIRNHN  468 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~  468 (479)
                      +|||||+.+|+|.++++....+.++....+
T Consensus        82 ~l~~e~~~~~~L~~~l~~~~~l~~~~~~~~  111 (266)
T cd06651          82 TIFMEYMPGGSVKDQLKAYGALTESVTRKY  111 (266)
T ss_pred             EEEEeCCCCCcHHHHHHHcCCCCHHHHHHH
Confidence            899999999999999986555444444433

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.44  E-value=2.1e-13  Score=131.72  Aligned_cols=110  Identities=24%  Similarity=0.356  Sum_probs=88.0

Q ss_pred             ccccccccccCccceEEEEeC-CCCEEEEEEeecCCCcchH--hHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          369 FADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGER--EFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~~~~--~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      |...++||+|+||+||++... +++.||+|.++........  +..+|++++++++|+||+++++++.+.+..++||||+
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~~   80 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEYC   80 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEEE
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhcccccccccccccccccccccccccccccc
Confidence            345688999999999999864 4568999999866543332  4567999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          446 PNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       446 ~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      .+|+|.++|..+..+.++....+..-++.++.+
T Consensus        81 ~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~  113 (260)
T PF00069_consen   81 PGGSLQDYLQKNKPLSEEEILKIAYQILEALAY  113 (260)
T ss_dssp             TTEBHHHHHHHHSSBBHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccc
Confidence            999999999855555666665555555555543

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.44  E-value=5.9e-13  Score=131.06  Aligned_cols=109  Identities=28%  Similarity=0.341  Sum_probs=82.0

Q ss_pred             ccccccccccCccceEEEEe-----CCCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCC--eEEE
Q 011696          369 FADQNLLGEGGFGSVYKGYL-----PDGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDD--RRLL  440 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~-----~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~--~~~L  440 (479)
                      |...++||+|+||+||++.+     .+++.||||.++.... ...+.|.+|+++|++++|+||++++|+|...+  ..+|
T Consensus         6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   85 (283)
T cd05080           6 LKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQL   85 (283)
T ss_pred             ceeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEE
Confidence            36678899999999988653     3577899999975433 34567999999999999999999999987643  5789


Q ss_pred             EEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          441 IYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||||+.+|+|.+++++.. +.++....+..-++.++.|
T Consensus        86 v~e~~~~~~l~~~~~~~~-l~~~~~~~i~~~l~~~l~~  122 (283)
T cd05080          86 IMEYVPLGSLRDYLPKHK-LNLAQLLLFAQQICEGMAY  122 (283)
T ss_pred             EecCCCCCCHHHHHHHcC-CCHHHHHHHHHHHHHHHHH
Confidence            999999999999987542 4444444444444444433

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.44  E-value=5.2e-13  Score=132.09  Aligned_cols=91  Identities=29%  Similarity=0.419  Sum_probs=77.1

Q ss_pred             cCccccccccccCccceEEEEeCC-----------------CCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccce
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPD-----------------GREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSL  428 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~-----------------g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~L  428 (479)
                      ++|...+.||+|+||.||++...+                 +..||+|+++.... ...++|.+|+++|++++|+||+++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~   84 (296)
T cd05051           5 QPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIARL   84 (296)
T ss_pred             hhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeEE
Confidence            456777899999999999987532                 24589999875443 345679999999999999999999


Q ss_pred             EEEEEeCCeEEEEEecCCCCCHHHHHhcC
Q 011696          429 VGYCISDDRRLLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       429 lG~~~~~~~~~LV~Ey~~~GsL~~~L~~~  457 (479)
                      +++|..++..++||||+.+|+|.++|+..
T Consensus        85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~  113 (296)
T cd05051          85 LGVCTVDPPLCMIMEYMENGDLNQFLQKH  113 (296)
T ss_pred             EEEEecCCCcEEEEecCCCCCHHHHHHhc
Confidence            99999999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.44  E-value=4.3e-13  Score=129.77  Aligned_cols=85  Identities=27%  Similarity=0.446  Sum_probs=73.3

Q ss_pred             ccccccCccceEEEEeCC--CC--EEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCC
Q 011696          373 NLLGEGGFGSVYKGYLPD--GR--EVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~~--g~--~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~  447 (479)
                      ++||+|+||.||+|.+.+  ++  .||||.++.... ...++|.+|+++|++++|+||++++|++.+ ...++||||+.+
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~~~~   79 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HPLMMVTELAPL   79 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcC-CeEEEEEEecCC
Confidence            468999999999998633  33  589999976555 455689999999999999999999999988 888999999999


Q ss_pred             CCHHHHHhcCC
Q 011696          448 NTLYFHLHGKW  458 (479)
Q Consensus       448 GsL~~~L~~~~  458 (479)
                      |+|.+++..+.
T Consensus        80 ~~L~~~l~~~~   90 (257)
T cd05040          80 GSLLDRLRKDA   90 (257)
T ss_pred             CcHHHHHHhcc
Confidence            99999998654

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.44  E-value=6.1e-13  Score=130.90  Aligned_cols=87  Identities=21%  Similarity=0.352  Sum_probs=74.9

Q ss_pred             CccccccccccCccceEEEEe-CCCCEEEEEEeecCC-CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      +|...++||+|+||.||+|.. .+++.||||++.... ....++|.+|+++|++++|+||++++|+|...+..+|||||+
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   81 (279)
T cd06619           2 DIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTEFM   81 (279)
T ss_pred             cchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEecC
Confidence            466678899999999999984 568899999986543 233457999999999999999999999999999999999999


Q ss_pred             CCCCHHHHH
Q 011696          446 PNNTLYFHL  454 (479)
Q Consensus       446 ~~GsL~~~L  454 (479)
                      .+|+|..+.
T Consensus        82 ~~~~l~~~~   90 (279)
T cd06619          82 DGGSLDVYR   90 (279)
T ss_pred             CCCChHHhh
Confidence            999997553

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.44  E-value=5.1e-13  Score=128.76  Aligned_cols=85  Identities=33%  Similarity=0.618  Sum_probs=75.2

Q ss_pred             ccccccCccceEEEEeCC----CCEEEEEEeecCCCcc-hHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCC
Q 011696          373 NLLGEGGFGSVYKGYLPD----GREVAIKQLKIGGGQG-EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~~----g~~VAVK~l~~~~~~~-~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~  447 (479)
                      ++||+|+||.||+|+..+    +..|+||.++...... .++|.+|++++.+++|.||++++++|...+..+|||||+.+
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYMEG   80 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEeccC
Confidence            469999999999998643    7789999997554433 57899999999999999999999999999999999999999


Q ss_pred             CCHHHHHhcC
Q 011696          448 NTLYFHLHGK  457 (479)
Q Consensus       448 GsL~~~L~~~  457 (479)
                      |+|.++++..
T Consensus        81 ~~L~~~l~~~   90 (262)
T cd00192          81 GDLLDYLRKS   90 (262)
T ss_pred             CcHHHHHhhc
Confidence            9999999875

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.44  E-value=5.6e-13  Score=130.92  Aligned_cols=90  Identities=20%  Similarity=0.361  Sum_probs=77.5

Q ss_pred             CccccccccccCccceEEEEeC-CCCEEEEEEeecCC-CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      .|...+.||+|+||.||+|... +++.||||.++... ....++|.+|+++|++++|+||++++++|.+++..+|||||+
T Consensus         5 ~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   84 (277)
T cd06640           5 LFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIMEYL   84 (277)
T ss_pred             hhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEecC
Confidence            3555678999999999999864 57889999987543 334567999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcC
Q 011696          446 PNNTLYFHLHGK  457 (479)
Q Consensus       446 ~~GsL~~~L~~~  457 (479)
                      .+|+|.++++.+
T Consensus        85 ~~~~L~~~i~~~   96 (277)
T cd06640          85 GGGSALDLLRAG   96 (277)
T ss_pred             CCCcHHHHHhcC
Confidence            999999998753

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.43  E-value=4.8e-13  Score=131.87  Aligned_cols=109  Identities=26%  Similarity=0.374  Sum_probs=82.8

Q ss_pred             CccccccccccCccceEEEEe-----CCCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeC--CeEE
Q 011696          368 GFADQNLLGEGGFGSVYKGYL-----PDGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISD--DRRL  439 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~-----~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~--~~~~  439 (479)
                      .|+..++||+|+||.||++.+     .+++.||||.++.... ...++|.+|+++|++++|+||++++|+|.+.  +..+
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   84 (284)
T cd05079           5 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIK   84 (284)
T ss_pred             hhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCceE
Confidence            356678899999999999974     2467899999875432 3345799999999999999999999999875  5678


Q ss_pred             EEEecCCCCCHHHHHhcCC-cccchhHHHHHHHHHHhh
Q 011696          440 LIYDYVPNNTLYFHLHGKW-QLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~~-~~~~~~~~~~~~l~~~~~  476 (479)
                      |||||+.+|+|.+++..+. .+.++....+..-++.++
T Consensus        85 lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~~i~~aL  122 (284)
T cd05079          85 LIMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQICKGM  122 (284)
T ss_pred             EEEEccCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999987543 234444444433333333

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.43  E-value=5.1e-13  Score=129.70  Aligned_cols=109  Identities=16%  Similarity=0.195  Sum_probs=86.6

Q ss_pred             CccccccccccCccceEEEEeC-CCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      +|...+.||+|+||.||++... +++.|+||++..... ...++|.+|+++|++++|+||++++++|..++..+||+||+
T Consensus         2 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~   81 (265)
T cd06605           2 DLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICMEYM   81 (265)
T ss_pred             cchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEEec
Confidence            4666788999999999999864 588999999875543 34467999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcC-CcccchhHHHHHHHHHHhh
Q 011696          446 PNNTLYFHLHGK-WQLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       446 ~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~  476 (479)
                      .+++|.++++.. ..+.+....++..-++.++
T Consensus        82 ~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l  113 (265)
T cd06605          82 DGGSLDKILKEVQGRIPERILGKIAVAVLKGL  113 (265)
T ss_pred             CCCcHHHHHHHccCCCCHHHHHHHHHHHHHHH
Confidence            999999999864 3444444444443333333

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.43  E-value=1.9e-13  Score=138.30  Aligned_cols=108  Identities=23%  Similarity=0.281  Sum_probs=84.1

Q ss_pred             HHHhcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC--------------cchHhHHHHHHHHHhCCCCCccc
Q 011696          363 VKATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--------------QGEREFKAEVEIISRIHHRHLVS  427 (479)
Q Consensus       363 ~~~~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~--------------~~~~~f~~Ei~il~~l~HpNIv~  427 (479)
                      .+..+.|...+.||+|.||.|-+|+. .+++.||||.|.+...              ...++..+||.||++|+|+|||+
T Consensus        93 ~k~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~  172 (576)
T KOG0585|consen   93 RKQLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVK  172 (576)
T ss_pred             ceehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeE
Confidence            34457788889999999999999984 5788999999843211              12346899999999999999999


Q ss_pred             eEEEEEe--CCeEEEEEecCCCCCHH-------------------------HHHhcCCcccchhHHHHHH
Q 011696          428 LVGYCIS--DDRRLLIYDYVPNNTLY-------------------------FHLHGKWQLGFDIRNHNNG  470 (479)
Q Consensus       428 LlG~~~~--~~~~~LV~Ey~~~GsL~-------------------------~~L~~~~~~~~~~~~~~~~  470 (479)
                      |+.+..+  .+.+|||+|||..|.+.                         +|||-+.++|.||+--+..
T Consensus       173 LiEvLDDP~s~~~YlVley~s~G~v~w~p~d~~els~~~Ar~ylrDvv~GLEYLH~QgiiHRDIKPsNLL  242 (576)
T KOG0585|consen  173 LIEVLDDPESDKLYLVLEYCSKGEVKWCPPDKPELSEQQARKYLRDVVLGLEYLHYQGIIHRDIKPSNLL  242 (576)
T ss_pred             EEEeecCcccCceEEEEEeccCCccccCCCCcccccHHHHHHHHHHHHHHHHHHHhcCeeccccchhheE
Confidence            9999875  45789999999998872                         4666666666666655543

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.43  E-value=3.6e-13  Score=131.54  Aligned_cols=91  Identities=25%  Similarity=0.368  Sum_probs=74.9

Q ss_pred             cCccccccccccCccceEEEEeCCC----CEEEEEEeecCC-CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDG----REVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g----~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      ++|...++||+|+||.||+|.+.+.    ..|+||..+... ....++|.+|+.+|++++|+||++++|+|.+ +..+||
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~~~lv   84 (270)
T cd05056           6 EDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITE-NPVWIV   84 (270)
T ss_pred             hhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcC-CCcEEE
Confidence            3466778999999999999986432    468999886544 3345679999999999999999999999865 557899


Q ss_pred             EecCCCCCHHHHHhcCC
Q 011696          442 YDYVPNNTLYFHLHGKW  458 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~~  458 (479)
                      |||+.+|+|.+++..+.
T Consensus        85 ~e~~~~~~L~~~l~~~~  101 (270)
T cd05056          85 MELAPLGELRSYLQVNK  101 (270)
T ss_pred             EEcCCCCcHHHHHHhCC
Confidence            99999999999997644

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.43  E-value=4.5e-14  Score=148.84  Aligned_cols=86  Identities=27%  Similarity=0.453  Sum_probs=71.8

Q ss_pred             cccccccccCccceEEEE-eCCCCEEEEEEeecCC-CcchHhHHHHHHHHHhCCCCCccceEEEEEeCC------eEEEE
Q 011696          370 ADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDD------RRLLI  441 (479)
Q Consensus       370 ~~~~~IG~G~fG~Vykg~-~~~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~------~~~LV  441 (479)
                      ...+.||+|+||.||+|+ ...|+.||||.++... ....+.+.+|+++|++|+|+|||+++|+-.+..      ..+||
T Consensus        16 ~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vlv   95 (732)
T KOG4250|consen   16 EMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVLV   95 (732)
T ss_pred             eehhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceEE
Confidence            345789999999999998 4679999999997544 344567999999999999999999999865444      45799


Q ss_pred             EecCCCCCHHHHHh
Q 011696          442 YDYVPNNTLYFHLH  455 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~  455 (479)
                      ||||.+|||+.+|+
T Consensus        96 mEyC~gGsL~~~L~  109 (732)
T KOG4250|consen   96 MEYCSGGSLRKVLN  109 (732)
T ss_pred             EeecCCCcHHHHhc
Confidence            99999999987665

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.43  E-value=6.7e-13  Score=131.15  Aligned_cols=90  Identities=21%  Similarity=0.256  Sum_probs=75.8

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCC--eEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDD--RRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~--~~~LV~  442 (479)
                      ++|...+.||.|.||.||++.. .+++.||+|.+..... ...++|.+|+++|++++|+||++++|+|.+.+  ..+|||
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   80 (287)
T cd06621           1 EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAM   80 (287)
T ss_pred             CceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEE
Confidence            3577788999999999999987 4578899999875433 34567999999999999999999999987543  678999


Q ss_pred             ecCCCCCHHHHHhc
Q 011696          443 DYVPNNTLYFHLHG  456 (479)
Q Consensus       443 Ey~~~GsL~~~L~~  456 (479)
                      ||+.+|+|.++++.
T Consensus        81 e~~~~~~L~~~l~~   94 (287)
T cd06621          81 EYCEGGSLDSIYKK   94 (287)
T ss_pred             EecCCCCHHHHHHH
Confidence            99999999988764

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.43  E-value=5.6e-13  Score=134.43  Aligned_cols=105  Identities=19%  Similarity=0.312  Sum_probs=77.7

Q ss_pred             ccccccCccceEEEEeC-CCCEEEEEEeecCC---CcchHhHHHHHH-HHHhCCCCCccceEEEEEeCCeEEEEEecCCC
Q 011696          373 NLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVE-IISRIHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~-il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~  447 (479)
                      ++||+|+||+||+++.. +++.||||+++...   .....++.+|.. +|+.++|+||++++++|.+.+..+||||||.+
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYING   80 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCC
Confidence            46999999999999864 57789999996432   222345555554 56789999999999999999999999999999


Q ss_pred             CCHHHHHhcCCcccchhHHHHHHHHHHhhc
Q 011696          448 NTLYFHLHGKWQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       448 GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~  477 (479)
                      |+|.++++.+..+..+....+..-++.++.
T Consensus        81 ~~L~~~~~~~~~~~~~~~~~~~~qi~~~L~  110 (325)
T cd05602          81 GELFYHLQRERCFLEPRARFYAAEIASALG  110 (325)
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            999999887655444433333333333333

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.43  E-value=3.6e-13  Score=133.17  Aligned_cols=92  Identities=26%  Similarity=0.457  Sum_probs=77.5

Q ss_pred             HhcCccccccccccCccceEEEEeCC------CCEEEEEEeecCCC-cchHhHHHHHHHHHhC-CCCCccceEEEEEeCC
Q 011696          365 ATDGFADQNLLGEGGFGSVYKGYLPD------GREVAIKQLKIGGG-QGEREFKAEVEIISRI-HHRHLVSLVGYCISDD  436 (479)
Q Consensus       365 ~~~~f~~~~~IG~G~fG~Vykg~~~~------g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~  436 (479)
                      ..++|...++||+|+||.||+|...+      .+.||||+++.... ....+|.+|+++|.++ +|+||++++|+|..++
T Consensus        10 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~   89 (293)
T cd05053          10 PRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQEG   89 (293)
T ss_pred             CHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCCC
Confidence            34567778899999999999998632      35799999875332 3345799999999999 8999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhc
Q 011696          437 RRLLIYDYVPNNTLYFHLHG  456 (479)
Q Consensus       437 ~~~LV~Ey~~~GsL~~~L~~  456 (479)
                      ..+|||||+.+|+|.++++.
T Consensus        90 ~~~li~e~~~~~~L~~~l~~  109 (293)
T cd05053          90 PLYVVVEYAAHGNLRDFLRA  109 (293)
T ss_pred             CeEEEEEeCCCCcHHHHHHh
Confidence            99999999999999999975

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.43  E-value=2.1e-13  Score=136.02  Aligned_cols=111  Identities=22%  Similarity=0.226  Sum_probs=91.8

Q ss_pred             ccccccccccCccceEEEEeCC-CCEEEEEEeecCCCc---chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          369 FADQNLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQ---GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~~~-g~~VAVK~l~~~~~~---~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      |...++||+|..|+||++++.+ +..+|+|.+......   .....+.|-+||+.++|+.|..|++.+..++..||||||
T Consensus        79 f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl~mey  158 (459)
T KOG0610|consen   79 FRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSCLVMEY  158 (459)
T ss_pred             HHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccceeEEEEec
Confidence            4445789999999999999854 478999999654332   234567789999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcC--CcccchhHHHHHHHHHHhhccC
Q 011696          445 VPNNTLYFHLHGK--WQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       445 ~~~GsL~~~L~~~--~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      |.||||+.+++.+  ..+..+...-+..-++++|.||
T Consensus       159 CpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYL  195 (459)
T KOG0610|consen  159 CPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYL  195 (459)
T ss_pred             CCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHH
Confidence            9999999988865  3466677777778888888886

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.43  E-value=4.8e-13  Score=132.92  Aligned_cols=91  Identities=27%  Similarity=0.560  Sum_probs=76.9

Q ss_pred             cCccccccccccCccceEEEEeCC-CC--EEEEEEeecCC-CcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPD-GR--EVAIKQLKIGG-GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~-g~--~VAVK~l~~~~-~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      ++|...++||+|+||+||+|++.+ ++  .++||.++... ....++|.+|+++++++ +|+||++++|+|.+.+..++|
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv   81 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYIA   81 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcceEE
Confidence            467778999999999999998643 33  47888887433 23346799999999999 799999999999999999999


Q ss_pred             EecCCCCCHHHHHhcC
Q 011696          442 YDYVPNNTLYFHLHGK  457 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~  457 (479)
                      |||+.+|+|.++|+..
T Consensus        82 ~e~~~~~~L~~~l~~~   97 (297)
T cd05089          82 IEYAPYGNLLDFLRKS   97 (297)
T ss_pred             EEecCCCcHHHHHHhc
Confidence            9999999999999754

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.43  E-value=4.7e-13  Score=132.83  Aligned_cols=91  Identities=27%  Similarity=0.447  Sum_probs=76.9

Q ss_pred             cCccccccccccCccceEEEEeC-----------------CCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccce
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-----------------DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSL  428 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-----------------~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~L  428 (479)
                      ++|...++||+|+||.||++...                 ++..||||+++.... ...++|.+|+++|++++|+||+++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~   84 (296)
T cd05095           5 KRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIRL   84 (296)
T ss_pred             hhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceE
Confidence            45778899999999999998532                 234689999975433 334579999999999999999999


Q ss_pred             EEEEEeCCeEEEEEecCCCCCHHHHHhcC
Q 011696          429 VGYCISDDRRLLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       429 lG~~~~~~~~~LV~Ey~~~GsL~~~L~~~  457 (479)
                      +++|..++..+|||||+.+|+|.++++..
T Consensus        85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~  113 (296)
T cd05095          85 LAVCITSDPLCMITEYMENGDLNQFLSRH  113 (296)
T ss_pred             EEEEecCCccEEEEEeCCCCcHHHHHHhc
Confidence            99999999999999999999999998753

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.43  E-value=6.4e-13  Score=130.00  Aligned_cols=86  Identities=30%  Similarity=0.609  Sum_probs=72.6

Q ss_pred             ccccccCccceEEEEeCC-CC--EEEEEEeecCC-CcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEEEEecCCC
Q 011696          373 NLLGEGGFGSVYKGYLPD-GR--EVAIKQLKIGG-GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYDYVPN  447 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~~-g~--~VAVK~l~~~~-~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~LV~Ey~~~  447 (479)
                      ++||+|+||.||+|.+.+ |+  .|++|+++... ....++|.+|++++.++ +|+||++++|+|...+..+|||||+.+
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPH   80 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCCC
Confidence            469999999999998743 43  46888887433 23445799999999999 899999999999999999999999999


Q ss_pred             CCHHHHHhcCC
Q 011696          448 NTLYFHLHGKW  458 (479)
Q Consensus       448 GsL~~~L~~~~  458 (479)
                      |+|.++++.+.
T Consensus        81 ~~L~~~i~~~~   91 (270)
T cd05047          81 GNLLDFLRKSR   91 (270)
T ss_pred             CcHHHHHHhcc
Confidence            99999998643

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.43  E-value=4.7e-13  Score=130.97  Aligned_cols=91  Identities=24%  Similarity=0.428  Sum_probs=77.6

Q ss_pred             cCccccccccccCccceEEEEeCC------CCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPD------GREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL  439 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~------g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~  439 (479)
                      ++|...++||+|+||.||+|...+      ++.||||.+..... ....+|.+|+.+|++++|+||++++|++...+..+
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~   85 (277)
T cd05032           6 EKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQPTL   85 (277)
T ss_pred             HHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCCCcE
Confidence            467778899999999999998632      35799999864433 33457999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcC
Q 011696          440 LIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~  457 (479)
                      +||||+.+|+|.++++..
T Consensus        86 ~v~e~~~~~~L~~~l~~~  103 (277)
T cd05032          86 VVMELMAKGDLKSYLRSR  103 (277)
T ss_pred             EEEecCCCCCHHHHHHhc
Confidence            999999999999998753

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.43  E-value=9.5e-13  Score=127.33  Aligned_cols=89  Identities=15%  Similarity=0.327  Sum_probs=77.3

Q ss_pred             CccccccccccCccceEEEEe-CCCCEEEEEEeecCC-CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      +|...++||+|+||.||++.. .+++.||+|.++... ....+++.+|++++++++|+||+++++++.+++..+|||||+
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   80 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEYC   80 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEeeC
Confidence            356678999999999999985 468899999986433 334567899999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhc
Q 011696          446 PNNTLYFHLHG  456 (479)
Q Consensus       446 ~~GsL~~~L~~  456 (479)
                      .+|+|.++++.
T Consensus        81 ~~~~l~~~~~~   91 (255)
T cd08219          81 DGGDLMQKIKL   91 (255)
T ss_pred             CCCcHHHHHHh
Confidence            99999998864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.43  E-value=6.8e-13  Score=129.05  Aligned_cols=95  Identities=27%  Similarity=0.391  Sum_probs=73.8

Q ss_pred             ccccCccceEEEEeC---CCCEEEEEEeecCCCc-chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCCCH
Q 011696          375 LGEGGFGSVYKGYLP---DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL  450 (479)
Q Consensus       375 IG~G~fG~Vykg~~~---~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~GsL  450 (479)
                      ||+|+||.||+|++.   ++..||||.++..... ..++|.+|+++|++|+|+||++++|+|. .+..+|||||+.+|+|
T Consensus         3 ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~-~~~~~lv~e~~~~~~L   81 (257)
T cd05115           3 LGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCE-AEALMLVMEMASGGPL   81 (257)
T ss_pred             cCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEc-CCCeEEEEEeCCCCCH
Confidence            899999999999763   3557999998754332 3457999999999999999999999985 4577899999999999


Q ss_pred             HHHHhcC-CcccchhHHHHHH
Q 011696          451 YFHLHGK-WQLGFDIRNHNNG  470 (479)
Q Consensus       451 ~~~L~~~-~~~~~~~~~~~~~  470 (479)
                      .++++.+ ..+.++...++.+
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~  102 (257)
T cd05115          82 NKFLSGKKDEITVSNVVELMH  102 (257)
T ss_pred             HHHHHhCCCCCCHHHHHHHHH
Confidence            9999753 3334444344333

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.43  E-value=7.3e-13  Score=128.40  Aligned_cols=105  Identities=27%  Similarity=0.405  Sum_probs=80.4

Q ss_pred             ccccccCccceEEEEeCC----CCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCC
Q 011696          373 NLLGEGGFGSVYKGYLPD----GREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~~----g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~  447 (479)
                      ++||+|+||.||+|.+..    ++.||||.++.... ...++|.+|+++|++++|+|||+++|+|. .+..++||||+.+
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~v~e~~~~   79 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCK-GEPLMLVMELAPL   79 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEc-CCceEEEEEeCCC
Confidence            469999999999997522    26899999875443 34567999999999999999999999886 4567899999999


Q ss_pred             CCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          448 NTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       448 GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |+|.++|+.+..+.++....+..-++.++.|
T Consensus        80 ~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~  110 (257)
T cd05060          80 GPLLKYLKKRREIPVSDLKELAHQVAMGMAY  110 (257)
T ss_pred             CcHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999876555555444444444444433

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.43  E-value=2.5e-13  Score=133.35  Aligned_cols=88  Identities=22%  Similarity=0.390  Sum_probs=75.6

Q ss_pred             ccccccccccCccceEEEEe-CCCCEEEEEEeecCC-CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCC
Q 011696          369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~  446 (479)
                      |...+.||+|+||.||+|.. .+++.||||.++... ....++|.+|+++|++++|+||++++|+|..++..+|||||+.
T Consensus         6 y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   85 (277)
T cd06642           6 FTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIMEYLG   85 (277)
T ss_pred             HHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEEccC
Confidence            44557799999999999985 457789999987443 2334579999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhc
Q 011696          447 NNTLYFHLHG  456 (479)
Q Consensus       447 ~GsL~~~L~~  456 (479)
                      +|+|.++++.
T Consensus        86 ~~~L~~~~~~   95 (277)
T cd06642          86 GGSALDLLKP   95 (277)
T ss_pred             CCcHHHHhhc
Confidence            9999998865

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.43  E-value=5.6e-13  Score=131.78  Aligned_cols=89  Identities=30%  Similarity=0.462  Sum_probs=75.4

Q ss_pred             CccccccccccCccceEEEEeC------CCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEE
Q 011696          368 GFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~------~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~L  440 (479)
                      +|...++||+|+||.||+|+..      +.+.|++|.++.... .+.++|.+|+++|++++|+||++++|+|..++..+|
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l   80 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLL   80 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCcEE
Confidence            3666789999999999999752      235688998865433 334679999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhc
Q 011696          441 IYDYVPNNTLYFHLHG  456 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~  456 (479)
                      ||||+.+|+|.++|+.
T Consensus        81 v~e~~~~~~L~~~l~~   96 (290)
T cd05045          81 IVEYAKYGSLRSFLRE   96 (290)
T ss_pred             EEEecCCCCHHHHHHh
Confidence            9999999999999875

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.43  E-value=6.7e-13  Score=128.17  Aligned_cols=92  Identities=18%  Similarity=0.397  Sum_probs=78.9

Q ss_pred             CccccccccccCccceEEEEeC-CCCEEEEEEeecCC--CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      +|...+.||+|+||.||+|... +|+.||+|.+....  ..+.+.|.+|++++++++|+||++++++|.+++..+|||||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~   80 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVMEY   80 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEec
Confidence            4667789999999999999864 57889999986532  23445789999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCc
Q 011696          445 VPNNTLYFHLHGKWQ  459 (479)
Q Consensus       445 ~~~GsL~~~L~~~~~  459 (479)
                      +.+++|.++++....
T Consensus        81 ~~~~~L~~~~~~~~~   95 (257)
T cd08225          81 CDGGDLMKRINRQRG   95 (257)
T ss_pred             CCCCcHHHHHHhccC
Confidence            999999999876543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.43  E-value=2.8e-13  Score=143.90  Aligned_cols=92  Identities=24%  Similarity=0.446  Sum_probs=71.1

Q ss_pred             hcCccccccccccCccceEEEEe-----------------CCCCEEEEEEeecCCCcchHh--------------HHHHH
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-----------------PDGREVAIKQLKIGGGQGERE--------------FKAEV  414 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-----------------~~g~~VAVK~l~~~~~~~~~~--------------f~~Ei  414 (479)
                      .++|...++||+|+||+||+|++                 .+++.||||+++.......++              ++.|+
T Consensus       144 ~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE~  223 (507)
T PLN03224        144 SDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVEA  223 (507)
T ss_pred             ccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHHH
Confidence            56899999999999999999964                 235679999997544332333              44577


Q ss_pred             HHHHhCCCCCc-----cceEEEEEe--------CCeEEEEEecCCCCCHHHHHhcC
Q 011696          415 EIISRIHHRHL-----VSLVGYCIS--------DDRRLLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       415 ~il~~l~HpNI-----v~LlG~~~~--------~~~~~LV~Ey~~~GsL~~~L~~~  457 (479)
                      .++.+++|.|+     ++++|+|..        .+..+||||||.+|+|.++||++
T Consensus       224 ~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~  279 (507)
T PLN03224        224 YMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGK  279 (507)
T ss_pred             HHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhc
Confidence            78888877765     788898864        34679999999999999999853

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.43  E-value=4.7e-13  Score=133.35  Aligned_cols=91  Identities=27%  Similarity=0.453  Sum_probs=77.0

Q ss_pred             cCccccccccccCccceEEEEeC--------CCCEEEEEEeecCC-CcchHhHHHHHHHHHhC-CCCCccceEEEEEeCC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP--------DGREVAIKQLKIGG-GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDD  436 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~--------~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~  436 (479)
                      ++|...+.||+|+||.||++.+.        +++.||||.++... ....++|.+|+++|.++ +|+||++++++|...+
T Consensus        15 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~   94 (304)
T cd05101          15 DKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG   94 (304)
T ss_pred             HHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEecCC
Confidence            45677789999999999999641        24479999986433 33446799999999999 8999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhcC
Q 011696          437 RRLLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       437 ~~~LV~Ey~~~GsL~~~L~~~  457 (479)
                      ..+|||||+.+|+|.++|+.+
T Consensus        95 ~~~lv~e~~~~~~L~~~l~~~  115 (304)
T cd05101          95 PLYVIVEYASKGNLREYLRAR  115 (304)
T ss_pred             ceEEEEecCCCCcHHHHHHhc
Confidence            999999999999999999864

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.43  E-value=4.3e-13  Score=129.75  Aligned_cols=101  Identities=25%  Similarity=0.434  Sum_probs=87.5

Q ss_pred             ccHHHHHHHhcCccccccccccCccceEEEE-eCCCCEEEEEEeecCCCcchHhHHHHHHHHHhC-CCCCccceEEEEEe
Q 011696          357 FTYEELVKATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCIS  434 (479)
Q Consensus       357 ~~~eel~~~~~~f~~~~~IG~G~fG~Vykg~-~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~  434 (479)
                      -+++|+.+.++     ++||+|+||.|--++ +.+|+.+|||++.....+.+....+|++++..+ .|.||++|+.+|++
T Consensus        73 g~F~d~YkLt~-----e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEd  147 (463)
T KOG0607|consen   73 GKFEDMYKLTS-----ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFED  147 (463)
T ss_pred             chHHHHHHhHH-----HHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhcc
Confidence            35677777664     789999999999886 678999999999877777778899999999998 69999999999999


Q ss_pred             CCeEEEEEecCCCCCHHHHHhcCCcccc
Q 011696          435 DDRRLLIYDYVPNNTLYFHLHGKWQLGF  462 (479)
Q Consensus       435 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~  462 (479)
                      ++..|||||-|.||.|..+++.+..+..
T Consensus       148 d~~FYLVfEKm~GGplLshI~~~~~F~E  175 (463)
T KOG0607|consen  148 DTRFYLVFEKMRGGPLLSHIQKRKHFNE  175 (463)
T ss_pred             cceEEEEEecccCchHHHHHHHhhhccH
Confidence            9999999999999999988887654433

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.42  E-value=7e-13  Score=128.88  Aligned_cols=90  Identities=26%  Similarity=0.395  Sum_probs=76.0

Q ss_pred             cCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~  446 (479)
                      ++|...+.||+|+||.||+|.+.++..||||.++... ...+.|.+|+++|++++|+||+++++++. .+..++||||+.
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~~   83 (260)
T cd05069           6 ESLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGT-MMPEAFLQEAQIMKKLRHDKLVPLYAVVS-EEPIYIVTEFMG   83 (260)
T ss_pred             HHeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCC-ccHHHHHHHHHHHHhCCCCCeeeEEEEEc-CCCcEEEEEcCC
Confidence            3466678899999999999998777789999886432 33467999999999999999999999885 566889999999


Q ss_pred             CCCHHHHHhcCC
Q 011696          447 NNTLYFHLHGKW  458 (479)
Q Consensus       447 ~GsL~~~L~~~~  458 (479)
                      +|+|.++++...
T Consensus        84 ~~~L~~~~~~~~   95 (260)
T cd05069          84 KGSLLDFLKEGD   95 (260)
T ss_pred             CCCHHHHHhhCC
Confidence            999999998644

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.42  E-value=7.9e-13  Score=129.52  Aligned_cols=90  Identities=22%  Similarity=0.491  Sum_probs=77.4

Q ss_pred             CccccccccccCccceEEEEe-CCCCEEEEEEeecCC-CcchHhHHHHHHHHHhCC---CCCccceEEEEEeCCeEEEEE
Q 011696          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG-GQGEREFKAEVEIISRIH---HRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~---HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      .|...++||+|+||.||+|.. .+|+.||||.++... ....++|.+|++++++++   |+||++++|+|.+++..+|||
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv~   81 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWIIM   81 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEEE
Confidence            355668899999999999985 568899999987543 334567999999999997   999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcC
Q 011696          443 DYVPNNTLYFHLHGK  457 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~  457 (479)
                      ||+.+|+|.++++.+
T Consensus        82 e~~~~~~L~~~~~~~   96 (277)
T cd06917          82 EYAEGGSVRTLMKAG   96 (277)
T ss_pred             ecCCCCcHHHHHHcc
Confidence            999999999998654

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.42  E-value=9e-13  Score=127.84  Aligned_cols=91  Identities=22%  Similarity=0.398  Sum_probs=79.6

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCC-CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      ++|...+.||+|+||+||+|.. .+++.|+||+++... ....++|.+|+++|++++|.||+++++++..++..+|||||
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~   80 (267)
T cd06610           1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMPY   80 (267)
T ss_pred             CcceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEEec
Confidence            3677789999999999999985 467889999986443 23456899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcC
Q 011696          445 VPNNTLYFHLHGK  457 (479)
Q Consensus       445 ~~~GsL~~~L~~~  457 (479)
                      +.+|+|.++++..
T Consensus        81 ~~~~~l~~~~~~~   93 (267)
T cd06610          81 LSGGSLLDIMKSS   93 (267)
T ss_pred             cCCCcHHHHHHHh
Confidence            9999999999764

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.42  E-value=7.2e-13  Score=130.15  Aligned_cols=91  Identities=31%  Similarity=0.539  Sum_probs=75.7

Q ss_pred             cCccccccccccCccceEEEEeC-CCC----EEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGR----EVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~----~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~L  440 (479)
                      ++|...++||+|+||+||+|.+. +|+    .||+|.++.... ...++|.+|+++|++++|+||++++|+|.. +..++
T Consensus         7 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~   85 (279)
T cd05057           7 TELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLS-SQVQL   85 (279)
T ss_pred             HHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-CceEE
Confidence            34666789999999999999863 333    589998865443 334679999999999999999999999987 78899


Q ss_pred             EEecCCCCCHHHHHhcCC
Q 011696          441 IYDYVPNNTLYFHLHGKW  458 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~~  458 (479)
                      ||||+.+|+|.++|+.+.
T Consensus        86 v~e~~~~g~L~~~l~~~~  103 (279)
T cd05057          86 ITQLMPLGCLLDYVRNHK  103 (279)
T ss_pred             EEecCCCCcHHHHHHhcc
Confidence            999999999999998643

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.42  E-value=8.9e-13  Score=128.42  Aligned_cols=110  Identities=22%  Similarity=0.405  Sum_probs=84.0

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCC-----CcchHhHHHHHHHHHhCCCCCccceEEEEEeC--CeE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG-----GQGEREFKAEVEIISRIHHRHLVSLVGYCISD--DRR  438 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~-----~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~--~~~  438 (479)
                      .+|...++||+|+||.||+|+. .+|+.||+|.+....     ....+.|.+|+++|++++|+||++++|++.+.  +..
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKL   81 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEE
Confidence            4677889999999999999985 468899999885321     12335799999999999999999999998764  357


Q ss_pred             EEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhh
Q 011696          439 LLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~  476 (479)
                      ++|+||+.+|+|.+++..+..+.+.+..++..-++.++
T Consensus        82 ~~v~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~al  119 (264)
T cd06653          82 SIFVEYMPGGSIKDQLKAYGALTENVTRRYTRQILQGV  119 (264)
T ss_pred             EEEEEeCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            89999999999999987655444444444443333333

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.42  E-value=6e-13  Score=138.12  Aligned_cols=106  Identities=18%  Similarity=0.162  Sum_probs=83.3

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      .++|...++||+|+||.||+++. .+++.||||..+      .+.+.+|+++|++|+|+|||+++|+|..++..+|||||
T Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~------~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv~e~  164 (391)
T PHA03212         91 KAGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ------RGGTATEAHILRAINHPSIIQLKGTFTYNKFTCLILPR  164 (391)
T ss_pred             cCCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechh------hhhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEEEec
Confidence            35788899999999999999985 468899999754      24588999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          445 VPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       445 ~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      +. |+|++++..+..+.+.....+..-++.++.|
T Consensus       165 ~~-~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~y  197 (391)
T PHA03212        165 YK-TDLYCYLAAKRNIAICDILAIERSVLRAIQY  197 (391)
T ss_pred             CC-CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            95 7898888766554444444444334444433

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.42  E-value=3.4e-13  Score=141.21  Aligned_cols=111  Identities=22%  Similarity=0.209  Sum_probs=92.5

Q ss_pred             CccccccccccCccceEEEE-eCCCCEEEEEEeecCCCc---chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          368 GFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQ---GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~-~~~g~~VAVK~l~~~~~~---~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      -|..++.||+|+-|.|.+|+ ...|+.+|||.+..+...   ....+.+||.||+-|.|+||++|++++.+..++|||+|
T Consensus        13 pwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylvlE   92 (786)
T KOG0588|consen   13 PWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLVLE   92 (786)
T ss_pred             ceeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEEEE
Confidence            35667889999999999997 467999999999654322   22358899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          444 YVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       444 y~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||.+|.|++||..+..+......|++...|+.|.|
T Consensus        93 yv~gGELFdylv~kG~l~e~eaa~ff~QIi~gv~y  127 (786)
T KOG0588|consen   93 YVPGGELFDYLVRKGPLPEREAAHFFRQILDGVSY  127 (786)
T ss_pred             ecCCchhHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999988877776666666666666654

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.42  E-value=8.4e-13  Score=131.94  Aligned_cols=90  Identities=21%  Similarity=0.394  Sum_probs=76.0

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      ++|...++||+|+||.||+|+.. +++.||||+++.... .....+.+|+++|++++|+||++++++|..++..+|||||
T Consensus         6 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   85 (309)
T cd07872           6 ETYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFEY   85 (309)
T ss_pred             CceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEeC
Confidence            45777789999999999999863 577899999975433 2334688999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcC
Q 011696          445 VPNNTLYFHLHGK  457 (479)
Q Consensus       445 ~~~GsL~~~L~~~  457 (479)
                      +.+ +|.++++..
T Consensus        86 ~~~-~l~~~~~~~   97 (309)
T cd07872          86 LDK-DLKQYMDDC   97 (309)
T ss_pred             CCC-CHHHHHHhc
Confidence            985 888877653

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.42  E-value=8.4e-13  Score=130.41  Aligned_cols=90  Identities=21%  Similarity=0.421  Sum_probs=76.9

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCCCc-chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      ++|...++||+|+||.||+|... +++.||||.++..... ....+.+|+++|++++|+||+++++++.+++..+|||||
T Consensus         5 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   84 (291)
T cd07844           5 ETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLVFEY   84 (291)
T ss_pred             cceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEEEec
Confidence            56777889999999999999864 6889999999754322 234688999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcC
Q 011696          445 VPNNTLYFHLHGK  457 (479)
Q Consensus       445 ~~~GsL~~~L~~~  457 (479)
                      +.+ +|.++++..
T Consensus        85 ~~~-~L~~~~~~~   96 (291)
T cd07844          85 LDT-DLKQYMDDC   96 (291)
T ss_pred             CCC-CHHHHHHhC
Confidence            984 999988754

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.42  E-value=5e-13  Score=133.97  Aligned_cols=91  Identities=26%  Similarity=0.452  Sum_probs=76.4

Q ss_pred             cCccccccccccCccceEEEEeC--------CCCEEEEEEeecCCC-cchHhHHHHHHHHHhC-CCCCccceEEEEEeCC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP--------DGREVAIKQLKIGGG-QGEREFKAEVEIISRI-HHRHLVSLVGYCISDD  436 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~--------~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~  436 (479)
                      ++|...++||+|+||.||++...        ++..||||+++.... ...++|.+|+++|+++ +|+||++++|+|.+++
T Consensus        12 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~   91 (314)
T cd05099          12 DRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQEG   91 (314)
T ss_pred             HHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEccCC
Confidence            45677899999999999999641        245699999874432 3345799999999999 6999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhcC
Q 011696          437 RRLLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       437 ~~~LV~Ey~~~GsL~~~L~~~  457 (479)
                      ..+|||||+.+|+|.++++.+
T Consensus        92 ~~~lv~e~~~~g~L~~~i~~~  112 (314)
T cd05099          92 PLYVIVEYAAKGNLREFLRAR  112 (314)
T ss_pred             ceEEEEecCCCCcHHHHHHhc
Confidence            999999999999999999754

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.42  E-value=9.8e-13  Score=126.91  Aligned_cols=91  Identities=19%  Similarity=0.357  Sum_probs=78.6

Q ss_pred             CccccccccccCccceEEEEe-CCCCEEEEEEeecCC--CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      +|...++||+|+||.||++.. .+++.||||++....  ....++|.+|+++|++++|+||+++++++..++..+|||||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEY   80 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEec
Confidence            466778999999999999985 467889999986543  23345799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCC
Q 011696          445 VPNNTLYFHLHGKW  458 (479)
Q Consensus       445 ~~~GsL~~~L~~~~  458 (479)
                      +.+|+|.++++.+.
T Consensus        81 ~~~~~L~~~~~~~~   94 (256)
T cd08220          81 APGGTLAEYIQKRC   94 (256)
T ss_pred             CCCCCHHHHHHHhc
Confidence            99999999998654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.42  E-value=6.9e-13  Score=131.13  Aligned_cols=89  Identities=20%  Similarity=0.293  Sum_probs=78.2

Q ss_pred             CccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCC
Q 011696          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~  446 (479)
                      +|...++||+|+||.||++.. .+++.|+||+++.......+.|.+|+.++++++|+||+++++++...+..++|+||+.
T Consensus        20 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~~~   99 (285)
T cd06648          20 YLDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFLE   99 (285)
T ss_pred             hhhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEeccC
Confidence            345557899999999999985 4688999999876555555679999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhc
Q 011696          447 NNTLYFHLHG  456 (479)
Q Consensus       447 ~GsL~~~L~~  456 (479)
                      +++|.+++..
T Consensus       100 ~~~L~~~~~~  109 (285)
T cd06648         100 GGALTDIVTH  109 (285)
T ss_pred             CCCHHHHHHh
Confidence            9999999876

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.41  E-value=1e-12  Score=129.90  Aligned_cols=97  Identities=25%  Similarity=0.352  Sum_probs=79.6

Q ss_pred             CccccccccccCccceEEEEe----CCCCEEEEEEeecCCC----cchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeE
Q 011696          368 GFADQNLLGEGGFGSVYKGYL----PDGREVAIKQLKIGGG----QGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRR  438 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~----~~g~~VAVK~l~~~~~----~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~  438 (479)
                      +|...++||+|+||.||+++.    .+|+.||||+++....    ...+++.+|+++|.++ +|.||+++++++..++..
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKL   80 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeE
Confidence            356678999999999999975    3688999999974322    2345789999999999 699999999999998899


Q ss_pred             EEEEecCCCCCHHHHHhcCCcccchh
Q 011696          439 LLIYDYVPNNTLYFHLHGKWQLGFDI  464 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~~~~~~~~  464 (479)
                      +|||||+.+|+|.++|..+..+.++.
T Consensus        81 ~lv~e~~~~~~L~~~l~~~~~l~~~~  106 (290)
T cd05613          81 HLILDYINGGELFTHLSQRERFKEQE  106 (290)
T ss_pred             EEEEecCCCCcHHHHHHHcCCCCHHH
Confidence            99999999999999997655444333

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.41  E-value=5.9e-14  Score=141.94  Aligned_cols=92  Identities=25%  Similarity=0.361  Sum_probs=74.9

Q ss_pred             hcCccccccccccCccceEEEE-eCCCCEEEEEEeecCCC-cchHhHHHHHHHHHhCC-CCCccceEEEEEeCC-eEEEE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGG-QGEREFKAEVEIISRIH-HRHLVSLVGYCISDD-RRLLI  441 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~-~~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~-HpNIv~LlG~~~~~~-~~~LV  441 (479)
                      .++|...+.||.|.||.||+|+ ...|+.||||+++..-. .++--=+|||+.|++|+ |+|||+|..++.+.+ .+++|
T Consensus         9 m~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L~fV   88 (538)
T KOG0661|consen    9 MDRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILYFV   88 (538)
T ss_pred             HHHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEeee
Confidence            4567777899999999999998 45688999999974332 22223579999999998 999999999999988 89999


Q ss_pred             EecCCCCCHHHHHhcCC
Q 011696          442 YDYVPNNTLYFHLHGKW  458 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~~  458 (479)
                      ||||+. +|++++.+|.
T Consensus        89 fE~Md~-NLYqLmK~R~  104 (538)
T KOG0661|consen   89 FEFMDC-NLYQLMKDRN  104 (538)
T ss_pred             HHhhhh-hHHHHHhhcC
Confidence            999975 5777766553

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.41  E-value=6e-13  Score=131.56  Aligned_cols=100  Identities=26%  Similarity=0.396  Sum_probs=83.1

Q ss_pred             cccHHHHHHHhcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhC-CCCCccceEEEEE
Q 011696          356 MFTYEELVKATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCI  433 (479)
Q Consensus       356 ~~~~eel~~~~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~  433 (479)
                      ++.++++.+++++|...+.||+|+||.||++.. .+++.||||.+.... ...+++.+|+.++.++ +|+||++++++|.
T Consensus        11 ~~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~-~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~   89 (291)
T cd06639          11 MLGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPIS-DVDEEIEAEYNILQSLPNHPNVVKFYGMFY   89 (291)
T ss_pred             hhhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccc-cHHHHHHHHHHHHHHhcCCCCeEEEEEEEE
Confidence            345566777788999999999999999999986 568899999986432 2345788999999999 8999999999997


Q ss_pred             eCC-----eEEEEEecCCCCCHHHHHhc
Q 011696          434 SDD-----RRLLIYDYVPNNTLYFHLHG  456 (479)
Q Consensus       434 ~~~-----~~~LV~Ey~~~GsL~~~L~~  456 (479)
                      ..+     ..++||||+.+|+|.++++.
T Consensus        90 ~~~~~~~~~~~lv~ey~~~~sL~~~~~~  117 (291)
T cd06639          90 KADKLVGGQLWLVLELCNGGSVTELVKG  117 (291)
T ss_pred             eccccCCCeeEEEEEECCCCcHHHHHHH
Confidence            643     57899999999999998864

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.41  E-value=9.5e-13  Score=128.47  Aligned_cols=86  Identities=29%  Similarity=0.481  Sum_probs=69.7

Q ss_pred             cccccccccCccceEEEEeCCC-C--EEEEEEeecCC--CcchHhHHHHHHHHHhCCCCCccceEEEEEeCC------eE
Q 011696          370 ADQNLLGEGGFGSVYKGYLPDG-R--EVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDD------RR  438 (479)
Q Consensus       370 ~~~~~IG~G~fG~Vykg~~~~g-~--~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~------~~  438 (479)
                      ..+++||+|+||.||+|.+.++ +  .||||.++...  ....++|.+|+++|++++|+||++++|+|....      ..
T Consensus         2 ~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   81 (272)
T cd05075           2 ALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSP   81 (272)
T ss_pred             ccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCc
Confidence            4568899999999999987443 2  58999886532  334567999999999999999999999986432      45


Q ss_pred             EEEEecCCCCCHHHHHh
Q 011696          439 LLIYDYVPNNTLYFHLH  455 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~  455 (479)
                      ++|||||.+|+|.+++.
T Consensus        82 ~~v~e~~~~~~l~~~~~   98 (272)
T cd05075          82 VVILPFMKHGDLHSFLL   98 (272)
T ss_pred             EEEEEeCCCCcHHHHHH
Confidence            89999999999988874

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.41  E-value=1.5e-12  Score=125.23  Aligned_cols=107  Identities=22%  Similarity=0.358  Sum_probs=85.7

Q ss_pred             CccccccccccCccceEEEEeC-CCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      +|...++||+|.||.||+++.. +++.|+||.++....  ...++|.+|+++|++++|+||+++++++.+++..++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   80 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEY   80 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEec
Confidence            3566789999999999999854 678999999975543  3456799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCcccchhHHHHHHHHHH
Q 011696          445 VPNNTLYFHLHGKWQLGFDIRNHNNGLLIL  474 (479)
Q Consensus       445 ~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~  474 (479)
                      +.+++|.+++.....+.++...++..-++.
T Consensus        81 ~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~  110 (254)
T cd06627          81 AENGSLRQIIKKFGPFPESLVAVYVYQVLQ  110 (254)
T ss_pred             CCCCcHHHHHHhccCCCHHHHHHHHHHHHH
Confidence            999999999876544444444444333333

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.41  E-value=5.5e-13  Score=149.46  Aligned_cols=92  Identities=13%  Similarity=0.309  Sum_probs=77.1

Q ss_pred             HhcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeC--CeEE
Q 011696          365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISD--DRRL  439 (479)
Q Consensus       365 ~~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~--~~~~  439 (479)
                      ..++|...++||+|+||+||++.. ..++.||+|.++....  .....|++|+.+|++|+|+|||+|+++|...  +.+|
T Consensus        11 ~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~ly   90 (1021)
T PTZ00266         11 RLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQKLY   90 (1021)
T ss_pred             ccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCEEE
Confidence            346788889999999999999985 4567899999864432  3345799999999999999999999988654  4678


Q ss_pred             EEEecCCCCCHHHHHhc
Q 011696          440 LIYDYVPNNTLYFHLHG  456 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~  456 (479)
                      ||||||.+|+|.++|+.
T Consensus        91 IVMEY~~gGSL~~lL~k  107 (1021)
T PTZ00266         91 ILMEFCDAGDLSRNIQK  107 (1021)
T ss_pred             EEEeCCCCCcHHHHHHH
Confidence            99999999999999875

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.41  E-value=6.3e-13  Score=130.67  Aligned_cols=109  Identities=17%  Similarity=0.336  Sum_probs=83.4

Q ss_pred             CccccccccccCccceEEEEe-CCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      +|...+.||+|+||.||+|+. .+|+.||||+++....  ...+.|.+|+++|++++|+||++++++|.+++..++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF   80 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEeec
Confidence            466778999999999999986 4688999999864432  2335799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCC--cccchhHHHHHHHHHHhhc
Q 011696          445 VPNNTLYFHLHGKW--QLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       445 ~~~GsL~~~L~~~~--~~~~~~~~~~~~l~~~~~~  477 (479)
                      +. ++|.++++...  .+.++...++..-++.++.
T Consensus        81 ~~-~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~  114 (284)
T cd07860          81 LH-QDLKKFMDASPLSGIPLPLIKSYLFQLLQGLA  114 (284)
T ss_pred             cc-cCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            95 68998887533  3334444443333444433

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.41  E-value=1.3e-12  Score=128.42  Aligned_cols=89  Identities=20%  Similarity=0.279  Sum_probs=77.2

Q ss_pred             CccccccccccCccceEEEEe-CCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      +|...+.||+|+||.||+|.. .+|+.|+||+++....  ...++|.+|++++++++|+||+++++++..++..++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~   80 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVMEY   80 (286)
T ss_pred             CceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEecc
Confidence            356678899999999999986 4688999999975442  3346799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcC
Q 011696          445 VPNNTLYFHLHGK  457 (479)
Q Consensus       445 ~~~GsL~~~L~~~  457 (479)
                      + +++|.++++..
T Consensus        81 ~-~~~L~~~~~~~   92 (286)
T cd07832          81 M-PSDLSEVLRDE   92 (286)
T ss_pred             c-CCCHHHHHHhc
Confidence            9 99999998754

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.41  E-value=1.4e-12  Score=128.29  Aligned_cols=94  Identities=24%  Similarity=0.344  Sum_probs=76.1

Q ss_pred             ccccCccceEEEEe-CCCCEEEEEEeecCCC---cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCCCH
Q 011696          375 LGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL  450 (479)
Q Consensus       375 IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~GsL  450 (479)
                      ||+|+||+||++.. .+|+.||+|++.....   ..++.+..|+++|++++|+||++++++|.+++..+|||||+.+|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L   80 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDL   80 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCH
Confidence            79999999999985 4589999999964321   2234567899999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcccchhHHHH
Q 011696          451 YFHLHGKWQLGFDIRNHN  468 (479)
Q Consensus       451 ~~~L~~~~~~~~~~~~~~  468 (479)
                      .++++......+++....
T Consensus        81 ~~~~~~~~~~~~~~~~~~   98 (277)
T cd05607          81 KYHIYNVGERGLEMERVI   98 (277)
T ss_pred             HHHHHhccccCCCHHHHH
Confidence            988876544445554433

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.41  E-value=1.3e-12  Score=128.30  Aligned_cols=110  Identities=20%  Similarity=0.359  Sum_probs=83.3

Q ss_pred             CccccccccccCccceEEEEe-CCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      +|...+.||+|+||+||+|+. .+|+.||||.++....  ...+++.+|+++|++++|+||++++|+|.+++..++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFEF   80 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEec
Confidence            366678899999999999986 4688999999864432  2345789999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcC---CcccchhHHHHHHHHHHhhcc
Q 011696          445 VPNNTLYFHLHGK---WQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       445 ~~~GsL~~~L~~~---~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      +. |+|.++++..   ..+.++...++..-++.++.|
T Consensus        81 ~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~  116 (285)
T cd07861          81 LS-MDLKKYLDSLPKGQYMDAELVKSYLYQILQGILF  116 (285)
T ss_pred             CC-CCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHH
Confidence            97 6898887642   233333333334434444433

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.41  E-value=1.2e-12  Score=128.65  Aligned_cols=84  Identities=27%  Similarity=0.398  Sum_probs=72.6

Q ss_pred             ccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCCCH
Q 011696          375 LGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL  450 (479)
Q Consensus       375 IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~GsL  450 (479)
                      ||+|+||+||++.. .+|+.||||.+....   ....+.|.+|+++|++++|+||+++++++...+..||||||+.+|+|
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDL   80 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCcH
Confidence            79999999999975 468899999986432   22344688999999999999999999999999999999999999999


Q ss_pred             HHHHhcCC
Q 011696          451 YFHLHGKW  458 (479)
Q Consensus       451 ~~~L~~~~  458 (479)
                      .++++...
T Consensus        81 ~~~l~~~~   88 (277)
T cd05577          81 KYHIYNVG   88 (277)
T ss_pred             HHHHHHcC
Confidence            99998655

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.41  E-value=1.3e-12  Score=127.01  Aligned_cols=93  Identities=22%  Similarity=0.251  Sum_probs=77.5

Q ss_pred             ccccCccceEEEEeC-CCCEEEEEEeecCCC---cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCCCH
Q 011696          375 LGEGGFGSVYKGYLP-DGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL  450 (479)
Q Consensus       375 IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~GsL  450 (479)
                      ||+|+||.||+++.. +++.|+||++.....   ...++|.+|++++++++|+||+++++++.+++..+|||||+.+|+|
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGEL   80 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCcH
Confidence            799999999999874 488999999864332   3345799999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcccchhHHH
Q 011696          451 YFHLHGKWQLGFDIRNH  467 (479)
Q Consensus       451 ~~~L~~~~~~~~~~~~~  467 (479)
                      +++|+++..+..+....
T Consensus        81 ~~~l~~~~~l~~~~~~~   97 (262)
T cd05572          81 WTILRDRGLFDEYTARF   97 (262)
T ss_pred             HHHHhhcCCCCHHHHHH
Confidence            99998765544444333

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.41  E-value=6.9e-13  Score=130.40  Aligned_cols=100  Identities=24%  Similarity=0.328  Sum_probs=80.6

Q ss_pred             CccccccccccCccceEEEEeC-CCCEEEEEEeecCC--CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      +|...++||+|+||.||+|... +++.|+||.++...  ....+.|.+|+++|++++|.||++++++|..++..+|||||
T Consensus         2 ~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~   81 (288)
T cd07833           2 KYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFEY   81 (288)
T ss_pred             ceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEec
Confidence            5777889999999999999864 57899999986433  23346799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCcccchhHHH
Q 011696          445 VPNNTLYFHLHGKWQLGFDIRNH  467 (479)
Q Consensus       445 ~~~GsL~~~L~~~~~~~~~~~~~  467 (479)
                      +.++.|..++..+..+.++....
T Consensus        82 ~~~~~l~~~~~~~~~~~~~~~~~  104 (288)
T cd07833          82 VERTLLELLEASPGGLPPDAVRS  104 (288)
T ss_pred             CCCCHHHHHHhcCCCCCHHHHHH
Confidence            99988876665544443333333

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.41  E-value=3.8e-13  Score=145.18  Aligned_cols=95  Identities=24%  Similarity=0.432  Sum_probs=78.9

Q ss_pred             cCccccccccccCccceEEEEeCCC-CEEEEEEeecCCCcchHhHHHHHHHHHhCC-CCCccceEEE-EE---eC---Ce
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDG-REVAIKQLKIGGGQGEREFKAEVEIISRIH-HRHLVSLVGY-CI---SD---DR  437 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g-~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~-HpNIv~LlG~-~~---~~---~~  437 (479)
                      .++..+++|.||||+.||++...++ ..||+|++-..+....+.+.+||++|++|+ |+|||.+++. ..   .+   -+
T Consensus        37 ~~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~E  116 (738)
T KOG1989|consen   37 HRVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVWE  116 (738)
T ss_pred             EEEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCceeE
Confidence            4566779999999999999997666 999999998777777788999999999996 9999999993 22   12   25


Q ss_pred             EEEEEecCCCCCHHHHHhcCCccc
Q 011696          438 RLLIYDYVPNNTLYFHLHGKWQLG  461 (479)
Q Consensus       438 ~~LV~Ey~~~GsL~~~L~~~~~~~  461 (479)
                      +||+||||.+|.|.|+++.+.+.+
T Consensus       117 vllLmEyC~gg~Lvd~mn~Rlq~~  140 (738)
T KOG1989|consen  117 VLLLMEYCKGGSLVDFMNTRLQTR  140 (738)
T ss_pred             EEeehhhccCCcHHHHHHHHHhcc
Confidence            689999999999999988665444

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.41  E-value=1.4e-12  Score=126.32  Aligned_cols=90  Identities=24%  Similarity=0.448  Sum_probs=76.1

Q ss_pred             cCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEe-CCeEEEEEecC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS-DDRRLLIYDYV  445 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~-~~~~~LV~Ey~  445 (479)
                      ++|...++||+|+||.||+|.. +|+.|++|.++..  ...+.|.+|+.+|++++|.||++++|++.. ++..+|||||+
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~-~~~~~~~k~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~   82 (256)
T cd05082           6 KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYM   82 (256)
T ss_pred             HhCeeeeeecccCCCeEEEEEE-cCCcEEEEEeCCC--chHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEECC
Confidence            4577779999999999999987 5788999998643  234679999999999999999999998764 45688999999


Q ss_pred             CCCCHHHHHhcCCc
Q 011696          446 PNNTLYFHLHGKWQ  459 (479)
Q Consensus       446 ~~GsL~~~L~~~~~  459 (479)
                      .+|+|.++++.+..
T Consensus        83 ~~~~L~~~~~~~~~   96 (256)
T cd05082          83 AKGSLVDYLRSRGR   96 (256)
T ss_pred             CCCcHHHHHHhcCC
Confidence            99999999986543

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.41  E-value=6.3e-13  Score=128.47  Aligned_cols=103  Identities=20%  Similarity=0.254  Sum_probs=82.2

Q ss_pred             ccccCccceEEEEeC-CCCEEEEEEeecCCC---cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCCCH
Q 011696          375 LGEGGFGSVYKGYLP-DGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL  450 (479)
Q Consensus       375 IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~GsL  450 (479)
                      ||+|+||.||+++.. +|+.|+||.++....   ...+.+.+|+++|++++|+||+++++++..++..||||||+.+|+|
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDL   80 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCcH
Confidence            689999999999975 489999999864433   3345799999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcccchhHHHHHHHHHHhhc
Q 011696          451 YFHLHGKWQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       451 ~~~L~~~~~~~~~~~~~~~~l~~~~~~  477 (479)
                      .++++....+.+..+.++..-++.++.
T Consensus        81 ~~~l~~~~~~~~~~~~~i~~qi~~~L~  107 (265)
T cd05579          81 ASLLENVGSLDEDVARIYIAEIVLALE  107 (265)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            999986554444444444444444443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.40  E-value=1e-12  Score=146.56  Aligned_cols=91  Identities=25%  Similarity=0.395  Sum_probs=79.0

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC---cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+++....   ...++|.+|++++++++|+|||+++++|.+++..+|||
T Consensus         2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVM   81 (932)
T PRK13184          2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTM   81 (932)
T ss_pred             CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEE
Confidence            4677889999999999999985 4588999999974322   22357999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcC
Q 011696          443 DYVPNNTLYFHLHGK  457 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~  457 (479)
                      |||++|+|.++|+..
T Consensus        82 EY~eGGSL~~lL~s~   96 (932)
T PRK13184         82 PYIEGYTLKSLLKSV   96 (932)
T ss_pred             EcCCCCCHHHHHHHh
Confidence            999999999998753

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.40  E-value=1.1e-12  Score=128.77  Aligned_cols=89  Identities=22%  Similarity=0.478  Sum_probs=76.3

Q ss_pred             CccccccccccCccceEEEEe-CCCCEEEEEEeecCCCc-chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      +|...++||+|+||.||+|+. .+|+.||||+++..... ..+.+.+|+++|++++|+||++++++|.+.+..+|||||+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   80 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFEYM   80 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEecC
Confidence            467778999999999999986 46889999999755433 3457889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcC
Q 011696          446 PNNTLYFHLHGK  457 (479)
Q Consensus       446 ~~GsL~~~L~~~  457 (479)
                      .+ +|.+++..+
T Consensus        81 ~~-~l~~~~~~~   91 (284)
T cd07836          81 DK-DLKKYMDTH   91 (284)
T ss_pred             Cc-cHHHHHHhc
Confidence            85 888887653

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.40  E-value=5.2e-13  Score=132.63  Aligned_cols=103  Identities=17%  Similarity=0.234  Sum_probs=82.1

Q ss_pred             cccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCCCH
Q 011696          372 QNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL  450 (479)
Q Consensus       372 ~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~GsL  450 (479)
                      ...||+|+||.||++.. .+++.||||++........+.|.+|+.+|++++|+||++++++|..++..++||||+.+|+|
T Consensus        27 ~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~L  106 (292)
T cd06658          27 FIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLEGGAL  106 (292)
T ss_pred             hhcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCCCCCcH
Confidence            36699999999999985 46889999998765555566799999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcccchhHHHHHHHHHHh
Q 011696          451 YFHLHGKWQLGFDIRNHNNGLLILT  475 (479)
Q Consensus       451 ~~~L~~~~~~~~~~~~~~~~l~~~~  475 (479)
                      .+++... .+.++....+..-++.+
T Consensus       107 ~~~~~~~-~l~~~~~~~~~~qi~~~  130 (292)
T cd06658         107 TDIVTHT-RMNEEQIATVCLSVLRA  130 (292)
T ss_pred             HHHHhcC-CCCHHHHHHHHHHHHHH
Confidence            9988643 23344433333333333

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.40  E-value=7.1e-13  Score=134.15  Aligned_cols=90  Identities=26%  Similarity=0.419  Sum_probs=75.5

Q ss_pred             CccccccccccCccceEEEEeC--------CCCEEEEEEeecCCC-cchHhHHHHHHHHHhC-CCCCccceEEEEEeCCe
Q 011696          368 GFADQNLLGEGGFGSVYKGYLP--------DGREVAIKQLKIGGG-QGEREFKAEVEIISRI-HHRHLVSLVGYCISDDR  437 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~--------~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~  437 (479)
                      +|...+.||+|+||.||++...        ++..||||.++.... ...++|.+|+++|.++ +|+||++++++|..++.
T Consensus        13 ~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~   92 (334)
T cd05100          13 RLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGP   92 (334)
T ss_pred             HeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccCCc
Confidence            4667789999999999999741        123689998874432 3346899999999999 89999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcC
Q 011696          438 RLLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       438 ~~LV~Ey~~~GsL~~~L~~~  457 (479)
                      .++||||+.+|+|.++|+.+
T Consensus        93 ~~lv~e~~~~g~L~~~l~~~  112 (334)
T cd05100          93 LYVLVEYASKGNLREYLRAR  112 (334)
T ss_pred             eEEEEecCCCCcHHHHHHhc
Confidence            99999999999999999754

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.40  E-value=8.3e-13  Score=131.49  Aligned_cols=85  Identities=20%  Similarity=0.294  Sum_probs=75.4

Q ss_pred             cccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCCCH
Q 011696          372 QNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL  450 (479)
Q Consensus       372 ~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~GsL  450 (479)
                      ...||+|+||.||++.. .+++.||||+++.......+.|.+|+.+|.+++|+||++++|+|..++..++||||+.+|+|
T Consensus        26 ~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~~~~~L  105 (297)
T cd06659          26 YIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFLQGGAL  105 (297)
T ss_pred             hhhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecCCCCCH
Confidence            45799999999999985 46889999999765555566799999999999999999999999999999999999999999


Q ss_pred             HHHHhc
Q 011696          451 YFHLHG  456 (479)
Q Consensus       451 ~~~L~~  456 (479)
                      .+++..
T Consensus       106 ~~~~~~  111 (297)
T cd06659         106 TDIVSQ  111 (297)
T ss_pred             HHHHhh
Confidence            987764

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.40  E-value=4.5e-13  Score=130.88  Aligned_cols=111  Identities=22%  Similarity=0.317  Sum_probs=89.0

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCC-CCCccceEEEEEeCCeEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIH-HRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~-HpNIv~LlG~~~~~~~~~LV  441 (479)
                      ++|...+.||+|+||.||+|+. .+|+.|+||.++...   ....+++.+|++++++++ |+||+++++++..++..+||
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv   80 (280)
T cd05581           1 DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFV   80 (280)
T ss_pred             CCceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEE
Confidence            3577788999999999999986 468899999986432   233457899999999998 99999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhc
Q 011696          442 YDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~  477 (479)
                      |||+.+|+|.+++.....+.++....+..-++.++.
T Consensus        81 ~e~~~~~~L~~~l~~~~~l~~~~~~~i~~ql~~~l~  116 (280)
T cd05581          81 LEYAPNGELLQYIRKYGSLDEKCTRFYAAEILLALE  116 (280)
T ss_pred             EcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999987655555555555444444443

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.40  E-value=7.4e-14  Score=140.10  Aligned_cols=90  Identities=20%  Similarity=0.393  Sum_probs=78.6

Q ss_pred             CccccccccccCccceEEEEe-CCCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      .|...++||+|.||+||||.. ..++.||||++..... .+.++.++||.+|+.++|.||.+.+|.++.+..++++||||
T Consensus        14 ~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiMey~   93 (467)
T KOG0201|consen   14 LYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIMEYC   93 (467)
T ss_pred             ccccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHHHHh
Confidence            455668899999999999985 3577899999986554 45678999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcC
Q 011696          446 PNNTLYFHLHGK  457 (479)
Q Consensus       446 ~~GsL~~~L~~~  457 (479)
                      .+|++.+.|...
T Consensus        94 ~gGsv~~lL~~~  105 (467)
T KOG0201|consen   94 GGGSVLDLLKSG  105 (467)
T ss_pred             cCcchhhhhccC
Confidence            999998877644

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.40  E-value=1.3e-12  Score=128.40  Aligned_cols=111  Identities=23%  Similarity=0.368  Sum_probs=84.3

Q ss_pred             cCccccccccccCccceEEEEe-CCCC----EEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGR----EVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~----~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~L  440 (479)
                      ++|...++||+|+||+||+|++ .+|+    .||||+++.... ...++|.+|+.++.+++|+||++++|+|.. ...++
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~~~l   85 (279)
T cd05109           7 TELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLT-STVQL   85 (279)
T ss_pred             hheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcC-CCcEE
Confidence            4577779999999999999984 3444    489999875433 345679999999999999999999999975 45779


Q ss_pred             EEecCCCCCHHHHHhcC-CcccchhHHHHHHHHHHhhcc
Q 011696          441 IYDYVPNNTLYFHLHGK-WQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||||+.+|+|+++++.+ ..+.+....++..-++.++.|
T Consensus        86 ~~~~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~  124 (279)
T cd05109          86 VTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQIAKGMSY  124 (279)
T ss_pred             EEEcCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999864 344555555544444444433

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.40  E-value=1.6e-12  Score=129.35  Aligned_cols=90  Identities=22%  Similarity=0.405  Sum_probs=76.3

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      ++|...+.||+|+||.||+|... +++.||||.++.... .....+.+|+++|++|+|+||+++++++...+..+|||||
T Consensus         6 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv~e~   85 (301)
T cd07873           6 ETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY   85 (301)
T ss_pred             cceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEEEec
Confidence            45777789999999999999863 578899999975433 3345688999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcC
Q 011696          445 VPNNTLYFHLHGK  457 (479)
Q Consensus       445 ~~~GsL~~~L~~~  457 (479)
                      +. |+|.++++..
T Consensus        86 ~~-~~l~~~l~~~   97 (301)
T cd07873          86 LD-KDLKQYLDDC   97 (301)
T ss_pred             cc-cCHHHHHHhc
Confidence            97 5898888753

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.40  E-value=1.8e-12  Score=126.33  Aligned_cols=88  Identities=25%  Similarity=0.434  Sum_probs=73.4

Q ss_pred             CccccccccccCccceEEEEeCC--CCEEEEEEeecCC----------CcchHhHHHHHHHHHh-CCCCCccceEEEEEe
Q 011696          368 GFADQNLLGEGGFGSVYKGYLPD--GREVAIKQLKIGG----------GQGEREFKAEVEIISR-IHHRHLVSLVGYCIS  434 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~~--g~~VAVK~l~~~~----------~~~~~~f~~Ei~il~~-l~HpNIv~LlG~~~~  434 (479)
                      +|+..++||+|+||.||+|...+  ++.||||+++...          ....+++.+|+.++.+ ++|+||++++++|.+
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   80 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLE   80 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEcc
Confidence            36667889999999999999754  6789999885322          1223468889998876 799999999999999


Q ss_pred             CCeEEEEEecCCCCCHHHHHh
Q 011696          435 DDRRLLIYDYVPNNTLYFHLH  455 (479)
Q Consensus       435 ~~~~~LV~Ey~~~GsL~~~L~  455 (479)
                      ++..+|||||+++++|.+++.
T Consensus        81 ~~~~~lv~e~~~~~~l~~~l~  101 (269)
T cd08528          81 NDRLYIVMDLIEGAPLGEHFN  101 (269)
T ss_pred             CCeEEEEEecCCCCcHHHHHH
Confidence            999999999999999998875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.39  E-value=1.2e-12  Score=128.65  Aligned_cols=108  Identities=19%  Similarity=0.310  Sum_probs=83.7

Q ss_pred             ccccccccccCccceEEEEe-CCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      |...++||+|.||+||+|.. .+|+.||||+++....  ...+.|.+|++++++++|+||++++++|.+++..++||||+
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~~   80 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEFL   80 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEecc
Confidence            34567899999999999985 4789999999875432  22357999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCC--cccchhHHHHHHHHHHhhc
Q 011696          446 PNNTLYFHLHGKW--QLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       446 ~~GsL~~~L~~~~--~~~~~~~~~~~~l~~~~~~  477 (479)
                      . ++|.++++...  .+.+.....+..-++.++.
T Consensus        81 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~  113 (283)
T cd07835          81 D-LDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIA  113 (283)
T ss_pred             C-cCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            4 78999987655  3444444444444444443

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.39  E-value=2.5e-12  Score=122.94  Aligned_cols=89  Identities=27%  Similarity=0.517  Sum_probs=79.6

Q ss_pred             ccccccccccCccceEEEEeC-CCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCC
Q 011696          369 FADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~  447 (479)
                      |...+.||+|+||.||++... +++.|+||+++.......++|.+|+++|++++|+||++++++|..++..++|+||+.+
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~   81 (253)
T cd05122           2 FEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEFCSG   81 (253)
T ss_pred             ceeeeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecCCC
Confidence            556788999999999999874 6889999999765555667899999999999999999999999999999999999999


Q ss_pred             CCHHHHHhcC
Q 011696          448 NTLYFHLHGK  457 (479)
Q Consensus       448 GsL~~~L~~~  457 (479)
                      ++|.+++..+
T Consensus        82 ~~L~~~~~~~   91 (253)
T cd05122          82 GSLKDLLKST   91 (253)
T ss_pred             CcHHHHHhhc
Confidence            9999998765

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.39  E-value=1.5e-12  Score=129.42  Aligned_cols=84  Identities=20%  Similarity=0.319  Sum_probs=75.0

Q ss_pred             ccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCCCHH
Q 011696          373 NLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLY  451 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~GsL~  451 (479)
                      .+||+|+||.||++.. .+|+.||||++........+.|.+|+.+|++++|+||++++++|..++..++||||+.+|+|.
T Consensus        26 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~  105 (292)
T cd06657          26 IKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALT  105 (292)
T ss_pred             HHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCCCcHH
Confidence            5699999999999986 568899999987555555667999999999999999999999999999999999999999999


Q ss_pred             HHHhc
Q 011696          452 FHLHG  456 (479)
Q Consensus       452 ~~L~~  456 (479)
                      +++..
T Consensus       106 ~~~~~  110 (292)
T cd06657         106 DIVTH  110 (292)
T ss_pred             HHHhc
Confidence            98754

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.39  E-value=1.5e-12  Score=131.65  Aligned_cols=106  Identities=25%  Similarity=0.254  Sum_probs=82.6

Q ss_pred             cccccccCccceEEEEe-CCCCEEEEEEeecCCCcc--------------hHhHHHHHHHHHhCCCCCccceEEEEEeCC
Q 011696          372 QNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQG--------------EREFKAEVEIISRIHHRHLVSLVGYCISDD  436 (479)
Q Consensus       372 ~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~--------------~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~  436 (479)
                      .++||+|+||+||+|+. .+|+.||||+++......              ...+.+|+++|++++|+||++++++|..++
T Consensus        14 ~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   93 (335)
T PTZ00024         14 GAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVDVYVEGD   93 (335)
T ss_pred             hhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeEEEecCC
Confidence            46799999999999985 468899999986433221              125789999999999999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          437 RRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       437 ~~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ..++|||||. |+|.+++..+..+.++....+..-++.++.|
T Consensus        94 ~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~ql~~aL~~  134 (335)
T PTZ00024         94 FINLVMDIMA-SDLKKVVDRKIRLTESQVKCILLQILNGLNV  134 (335)
T ss_pred             cEEEEEeccc-cCHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999997 6899988766555555555554444444433

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.39  E-value=7.2e-13  Score=129.09  Aligned_cols=85  Identities=33%  Similarity=0.638  Sum_probs=72.6

Q ss_pred             ccccccCccceEEEEeCC-------CCEEEEEEeecCC-CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          373 NLLGEGGFGSVYKGYLPD-------GREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~~-------g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      ++||+|+||.||+|++.+       ++.||||.+.... .....+|.+|+++|++++|+||++++|+|...+..++||||
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMEL   80 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEEec
Confidence            469999999999998632       2579999886443 23456899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcC
Q 011696          445 VPNNTLYFHLHGK  457 (479)
Q Consensus       445 ~~~GsL~~~L~~~  457 (479)
                      +.+|+|.++|+.+
T Consensus        81 ~~~~~L~~~l~~~   93 (269)
T cd05044          81 MEGGDLLSYLRDA   93 (269)
T ss_pred             cCCCcHHHHHHHh
Confidence            9999999999753

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.39  E-value=1.4e-12  Score=128.33  Aligned_cols=89  Identities=30%  Similarity=0.493  Sum_probs=71.3

Q ss_pred             CccccccccccCccceEEEEe-CCCC----EEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEE
Q 011696          368 GFADQNLLGEGGFGSVYKGYL-PDGR----EVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~-~~g~----~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      +|...++||+|+||+||+|.+ .+|+    .|++|++..... ...++|.+|+.++++++|+||++++|+|. ++..++|
T Consensus         8 ~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~-~~~~~~i   86 (279)
T cd05111           8 ELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICP-GASLQLV   86 (279)
T ss_pred             hceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEEC-CCccEEE
Confidence            456668999999999999986 3444    477787754332 23457889999999999999999999985 4557899


Q ss_pred             EecCCCCCHHHHHhcC
Q 011696          442 YDYVPNNTLYFHLHGK  457 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~  457 (479)
                      +||+.+|+|.++++.+
T Consensus        87 ~e~~~~gsL~~~l~~~  102 (279)
T cd05111          87 TQLSPLGSLLDHVRQH  102 (279)
T ss_pred             EEeCCCCcHHHHHHhc
Confidence            9999999999999864

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.39  E-value=1.4e-12  Score=126.88  Aligned_cols=91  Identities=27%  Similarity=0.439  Sum_probs=77.3

Q ss_pred             HhcCccccccccccCccceEEEEeC-CCCEEEEEEeecCCCcchHhHHHHHHHHHhC-CCCCccceEEEEEeCC------
Q 011696          365 ATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCISDD------  436 (479)
Q Consensus       365 ~~~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~------  436 (479)
                      .+++|...+.||+|+||.||+|... +++.|++|.++.... ..++|.+|+++++++ +|+||++++|+|.+..      
T Consensus         4 ~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~   82 (275)
T cd06608           4 PTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIED-EEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDD   82 (275)
T ss_pred             chhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCch-hHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcce
Confidence            4577888899999999999999864 578899998875432 346799999999999 7999999999997644      


Q ss_pred             eEEEEEecCCCCCHHHHHhc
Q 011696          437 RRLLIYDYVPNNTLYFHLHG  456 (479)
Q Consensus       437 ~~~LV~Ey~~~GsL~~~L~~  456 (479)
                      ..+|||||+.+|+|.++++.
T Consensus        83 ~~~lv~e~~~~~~L~~~~~~  102 (275)
T cd06608          83 QLWLVMELCGGGSVTDLVKG  102 (275)
T ss_pred             EEEEEEEcCCCCcHHHHHHH
Confidence            47899999999999998875

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.38  E-value=1.4e-12  Score=137.94  Aligned_cols=106  Identities=20%  Similarity=0.225  Sum_probs=82.6

Q ss_pred             hcCccccccccccCccceEEEEeC-CCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      ..+|...++||+|+||.||+++.. .++.||||...      ...+.+|+++|++|+|+|||+++++|..++..+|||||
T Consensus       168 ~~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~------~~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~e~  241 (461)
T PHA03211        168 GLGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGW------YASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVLPK  241 (461)
T ss_pred             cCCeEEEEEEccCCCeEEEEEEECCCCCEEEEeccc------ccCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEEc
Confidence            346888899999999999999864 47889999643      23578999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCC-cccchhHHHHHHHHHHhhcc
Q 011696          445 VPNNTLYFHLHGKW-QLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       445 ~~~GsL~~~L~~~~-~~~~~~~~~~~~l~~~~~~~  478 (479)
                      +. |+|+++|..+. .+.+....++..-++.+|.|
T Consensus       242 ~~-~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~y  275 (461)
T PHA03211        242 YR-SDLYTYLGARLRPLGLAQVTAVARQLLSAIDY  275 (461)
T ss_pred             cC-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            95 78988886543 34444444444444444444

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.38  E-value=3.9e-13  Score=120.47  Aligned_cols=79  Identities=20%  Similarity=0.449  Sum_probs=67.3

Q ss_pred             ccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcch--HhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGE--REFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~--~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      |...++||+|.||+||||+. ..++.||+|+++..+.++.  ..-++||.+|++|+|.|||+|+++...+..+-||||||
T Consensus         4 ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsdkkltlvfe~c   83 (292)
T KOG0662|consen    4 YDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFC   83 (292)
T ss_pred             hHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHHHh
Confidence            44457899999999999984 5578999999986554332  46899999999999999999999999999999999999


Q ss_pred             CC
Q 011696          446 PN  447 (479)
Q Consensus       446 ~~  447 (479)
                      ..
T Consensus        84 dq   85 (292)
T KOG0662|consen   84 DQ   85 (292)
T ss_pred             hH
Confidence            63

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.38  E-value=1.8e-12  Score=125.82  Aligned_cols=85  Identities=26%  Similarity=0.478  Sum_probs=69.9

Q ss_pred             ccccccCccceEEEEeC----CCCEEEEEEeecCC-CcchHhHHHHHHHHHhCCCCCccceEEEEEe-CCeEEEEEecCC
Q 011696          373 NLLGEGGFGSVYKGYLP----DGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCIS-DDRRLLIYDYVP  446 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~----~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~-~~~~~LV~Ey~~  446 (479)
                      ++||+|+||.||+|.+.    ++..||||++.... ....+.|.+|+.+|++++|+||++++|+|.. ++..++||||+.
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~   80 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYMK   80 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecCC
Confidence            46999999999999853    23469999885433 3345679999999999999999999999875 445789999999


Q ss_pred             CCCHHHHHhcC
Q 011696          447 NNTLYFHLHGK  457 (479)
Q Consensus       447 ~GsL~~~L~~~  457 (479)
                      +|+|.++++++
T Consensus        81 ~~~L~~~~~~~   91 (262)
T cd05058          81 HGDLRNFIRSE   91 (262)
T ss_pred             CCCHHHHHHhc
Confidence            99999999764

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.38  E-value=1.7e-12  Score=128.28  Aligned_cols=90  Identities=21%  Similarity=0.401  Sum_probs=75.7

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcc-hHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQG-EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~-~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      +++|...+.||+|+||.||+|.. .+|+.||||+++...... ...+.+|+++|++++|.||+++++++.+++..++|||
T Consensus         4 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~e   83 (291)
T cd07870           4 ATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTFVFE   83 (291)
T ss_pred             cceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEEEEe
Confidence            46788889999999999999985 468899999996543332 3468899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhc
Q 011696          444 YVPNNTLYFHLHG  456 (479)
Q Consensus       444 y~~~GsL~~~L~~  456 (479)
                      |+. ++|.+++..
T Consensus        84 ~~~-~~l~~~~~~   95 (291)
T cd07870          84 YMH-TDLAQYMIQ   95 (291)
T ss_pred             ccc-CCHHHHHHh
Confidence            995 778776654

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.38  E-value=2e-12  Score=127.94  Aligned_cols=92  Identities=22%  Similarity=0.416  Sum_probs=77.0

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      ++|...+.||+|.||+||+|+.. +|+.||||+++....  ...+.|.+|+++|++++|+||++++++|.+++..+||||
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   81 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFE   81 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEEe
Confidence            46777889999999999999864 688999999864432  223578999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCc
Q 011696          444 YVPNNTLYFHLHGKWQ  459 (479)
Q Consensus       444 y~~~GsL~~~L~~~~~  459 (479)
                      |+. ++|.+++..+..
T Consensus        82 ~~~-~~l~~~~~~~~~   96 (294)
T PLN00009         82 YLD-LDLKKHMDSSPD   96 (294)
T ss_pred             ccc-ccHHHHHHhCCC
Confidence            996 588887765443

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.38  E-value=2.1e-12  Score=124.97  Aligned_cols=88  Identities=25%  Similarity=0.529  Sum_probs=74.9

Q ss_pred             cCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~  446 (479)
                      ++|...++||+|+||.||+|.. +++.||||.++..  ...+.|.+|+.+|++++|+||++++|++..+ ..++||||+.
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~-~~~~~~iK~~~~~--~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~~v~e~~~   81 (254)
T cd05083           6 QKLTLGEIIGEGEFGAVLQGEY-TGQKVAVKNIKCD--VTAQAFLEETAVMTKLHHKNLVRLLGVILHN-GLYIVMELMS   81 (254)
T ss_pred             HHceeeeeeccCCCCceEeccc-CCCceEEEeecCc--chHHHHHHHHHHHHhCCCCCcCeEEEEEcCC-CcEEEEECCC
Confidence            3467778999999999999986 7788999998643  2345799999999999999999999998654 5789999999


Q ss_pred             CCCHHHHHhcCC
Q 011696          447 NNTLYFHLHGKW  458 (479)
Q Consensus       447 ~GsL~~~L~~~~  458 (479)
                      +|+|.++++.+.
T Consensus        82 ~~~L~~~l~~~~   93 (254)
T cd05083          82 KGNLVNFLRTRG   93 (254)
T ss_pred             CCCHHHHHHhcC
Confidence            999999997654

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.38  E-value=1.5e-12  Score=128.10  Aligned_cols=88  Identities=34%  Similarity=0.449  Sum_probs=74.6

Q ss_pred             ccccccccccCccceEEEEeCC------CCEEEEEEeecCCCcc-hHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEE
Q 011696          369 FADQNLLGEGGFGSVYKGYLPD------GREVAIKQLKIGGGQG-EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~~~------g~~VAVK~l~~~~~~~-~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      |...+.||+|+||.||+|.+.+      ++.||||+++...... .++|.+|++++.+++|+||++++|+|.+.+..+++
T Consensus         7 ~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~~   86 (283)
T cd05091           7 VRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLSMI   86 (283)
T ss_pred             HHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCceEEE
Confidence            4445789999999999998532      4679999997544332 35699999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhc
Q 011696          442 YDYVPNNTLYFHLHG  456 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~  456 (479)
                      +||+.+++|.++++.
T Consensus        87 ~e~~~~~~l~~~l~~  101 (283)
T cd05091          87 FSYCSHSDLHEFLVM  101 (283)
T ss_pred             EEcCCCCcHHHHHHh
Confidence            999999999999863

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.37  E-value=2.6e-12  Score=124.15  Aligned_cols=89  Identities=20%  Similarity=0.398  Sum_probs=73.8

Q ss_pred             CccccccccccCccceEEEEe-CCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeC--CeEEEEE
Q 011696          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISD--DRRLLIY  442 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~--~~~~LV~  442 (479)
                      +|...+.||+|+||.||++.. .+|+.||+|+++....  ...++|.+|+++|++++|+||+++++++...  ...++||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVM   80 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEe
Confidence            356678899999999999985 4678899999874432  3345699999999999999999999988643  4578999


Q ss_pred             ecCCCCCHHHHHhc
Q 011696          443 DYVPNNTLYFHLHG  456 (479)
Q Consensus       443 Ey~~~GsL~~~L~~  456 (479)
                      ||+.+|+|.+++..
T Consensus        81 e~~~~~~L~~~l~~   94 (265)
T cd08217          81 EYCEGGDLAQLIQK   94 (265)
T ss_pred             hhccCCCHHHHHHH
Confidence            99999999999865

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.37  E-value=1.7e-12  Score=128.06  Aligned_cols=96  Identities=25%  Similarity=0.346  Sum_probs=78.4

Q ss_pred             ccccccccccCccceEEEEe----CCCCEEEEEEeecCC----CcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEE
Q 011696          369 FADQNLLGEGGFGSVYKGYL----PDGREVAIKQLKIGG----GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRL  439 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~----~~g~~VAVK~l~~~~----~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~  439 (479)
                      |...++||+|+||.||+++.    .+++.||||+++...    ....++|.+|+++|.++ +|+||+++++++..++..+
T Consensus         2 ~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~~   81 (288)
T cd05583           2 FELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKLH   81 (288)
T ss_pred             ceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEEE
Confidence            56678899999999999874    356789999987432    22335689999999999 6999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcCCcccchh
Q 011696          440 LIYDYVPNNTLYFHLHGKWQLGFDI  464 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~~~~~~~~  464 (479)
                      |||||+.+|+|+++++.+..+.+..
T Consensus        82 lv~e~~~~~~L~~~~~~~~~~~~~~  106 (288)
T cd05583          82 LILDYVNGGELFTHLYQREHFTESE  106 (288)
T ss_pred             EEEecCCCCcHHHHHhhcCCcCHHH
Confidence            9999999999999987654444433

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.37  E-value=2.4e-12  Score=127.32  Aligned_cols=111  Identities=22%  Similarity=0.281  Sum_probs=84.0

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCCCc--chHhHHHHHHHHHhCCCCCccceEEEEEeC--CeEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHHRHLVSLVGYCISD--DRRLLI  441 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~--~~~~LV  441 (479)
                      ++|...+.||+|+||.||+|... +++.|+||.++.....  ....+.+|+++|++++|+||++++++|...  +..|||
T Consensus         5 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~lv   84 (293)
T cd07843           5 DEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYMV   84 (293)
T ss_pred             hhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEEE
Confidence            45667788999999999999864 5788999999754322  234678999999999999999999999887  789999


Q ss_pred             EecCCCCCHHHHHhcCCc-ccchhHHHHHHHHHHhhcc
Q 011696          442 YDYVPNNTLYFHLHGKWQ-LGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~~~-~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||+. ++|.++++.+.. +.++....+..-++.++.|
T Consensus        85 ~e~~~-~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~  121 (293)
T cd07843          85 MEYVE-HDLKSLMETMKQPFLQSEVKCLMLQLLSGVAH  121 (293)
T ss_pred             ehhcC-cCHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence            99998 589888876433 4444444444444444433

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.37  E-value=1e-12  Score=129.01  Aligned_cols=109  Identities=22%  Similarity=0.295  Sum_probs=84.4

Q ss_pred             ccccccccccCccceEEEEeC-CCCEEEEEEeecCCC-cchHhHHHHHHHHHhCC-CCCccceEEEEEeCCeEEEEEecC
Q 011696          369 FADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG-QGEREFKAEVEIISRIH-HRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~-HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      |...+.||+|+||+||+|+.. +++.|+||+++.... .+...+.+|++++++++ |+||++++|+|.+++..+|||||+
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~   80 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEYM   80 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEecC
Confidence            445688999999999999974 478899999864432 23335678999999999 999999999999999999999999


Q ss_pred             CCCCHHHHHhcCC--cccchhHHHHHHHHHHhhcc
Q 011696          446 PNNTLYFHLHGKW--QLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       446 ~~GsL~~~L~~~~--~~~~~~~~~~~~l~~~~~~~  478 (479)
                       +|+|+++++.+.  .+.++....+..-++.++.|
T Consensus        81 -~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  114 (283)
T cd07830          81 -EGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAH  114 (283)
T ss_pred             -CCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence             899999998765  44444444444444444443

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.37  E-value=3.9e-12  Score=122.28  Aligned_cols=90  Identities=17%  Similarity=0.363  Sum_probs=78.7

Q ss_pred             CccccccccccCccceEEEEeC-CCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      +|...+.||+|+||.||++... +++.|+||++.....  ...+++.+|++++++++|+||+++++++...+..+||+||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e~   80 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEY   80 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEEe
Confidence            3666788999999999999864 588999999975443  4456799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcC
Q 011696          445 VPNNTLYFHLHGK  457 (479)
Q Consensus       445 ~~~GsL~~~L~~~  457 (479)
                      +.+++|.++++.+
T Consensus        81 ~~~~~L~~~l~~~   93 (258)
T cd08215          81 ADGGDLSQKIKKQ   93 (258)
T ss_pred             cCCCcHHHHHHHh
Confidence            9999999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.37  E-value=2e-12  Score=127.16  Aligned_cols=99  Identities=25%  Similarity=0.467  Sum_probs=81.6

Q ss_pred             cHHHHHHHhcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhC-CCCCccceEEEEEe-
Q 011696          358 TYEELVKATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCIS-  434 (479)
Q Consensus       358 ~~eel~~~~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~-  434 (479)
                      ++.++....+.|...++||+|+||+||+|.. .+++.||+|.+.... ....+|.+|+.++.++ +|+||++++|+|.. 
T Consensus         7 ~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~   85 (282)
T cd06636           7 DLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTE-DEEEEIKLEINMLKKYSHHRNIATYYGAFIKK   85 (282)
T ss_pred             hhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecCh-HHHHHHHHHHHHHHHhcCCCcEEEEeeehhcc
Confidence            4556666777888889999999999999986 467889999886432 3345789999999999 79999999999863 


Q ss_pred             -----CCeEEEEEecCCCCCHHHHHhcC
Q 011696          435 -----DDRRLLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       435 -----~~~~~LV~Ey~~~GsL~~~L~~~  457 (479)
                           .+..+|||||+.+|+|.+++...
T Consensus        86 ~~~~~~~~~~iv~e~~~~~~L~~~~~~~  113 (282)
T cd06636          86 SPPGHDDQLWLVMEFCGAGSVTDLVKNT  113 (282)
T ss_pred             cccCCCCEEEEEEEeCCCCcHHHHHHHc
Confidence                 45678999999999999988653

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.36  E-value=2.6e-12  Score=129.83  Aligned_cols=104  Identities=24%  Similarity=0.298  Sum_probs=79.1

Q ss_pred             ccccCccceEEEEe-CCCCEEEEEEeecCCC---cchHhHHHHHHHHHhC---CCCCccceEEEEEeCCeEEEEEecCCC
Q 011696          375 LGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---QGEREFKAEVEIISRI---HHRHLVSLVGYCISDDRRLLIYDYVPN  447 (479)
Q Consensus       375 IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l---~HpNIv~LlG~~~~~~~~~LV~Ey~~~  447 (479)
                      ||+|+||+||+|+. .+|+.||||++.....   .+..++.+|..++.++   +|+||+++++++.+.+..||||||+.+
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~   80 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSG   80 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCC
Confidence            79999999999985 4588999999864322   2234567777777765   799999999999999999999999999


Q ss_pred             CCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          448 NTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       448 GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |+|.++|..+..+.++....+..-++.++.|
T Consensus        81 g~L~~~l~~~~~~~~~~~~~~~~qil~al~~  111 (330)
T cd05586          81 GELFWHLQKEGRFSEDRAKFYIAELVLALEH  111 (330)
T ss_pred             ChHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            9999988766555554444444444444444

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.36  E-value=1.6e-12  Score=132.62  Aligned_cols=89  Identities=29%  Similarity=0.497  Sum_probs=75.9

Q ss_pred             cccccccCccceEEEEe-CCCCEEEEEEeecCC--CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCC
Q 011696          372 QNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNN  448 (479)
Q Consensus       372 ~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~G  448 (479)
                      +++||.|.||+||-|.. ++|+.||||.|....  ...+.++.+|+.||.+++|+.||.|...|+..+..|+|||-+.|.
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl~GD  648 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKLHGD  648 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhhcch
Confidence            57899999999999974 679999999996443  344567999999999999999999999999999999999999887


Q ss_pred             CHHHHHhc-CCcc
Q 011696          449 TLYFHLHG-KWQL  460 (479)
Q Consensus       449 sL~~~L~~-~~~~  460 (479)
                      -|.++|.. +.++
T Consensus       649 MLEMILSsEkgRL  661 (888)
T KOG4236|consen  649 MLEMILSSEKGRL  661 (888)
T ss_pred             HHHHHHHhhcccc
Confidence            77777753 3443

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.36  E-value=2.7e-12  Score=126.03  Aligned_cols=89  Identities=18%  Similarity=0.297  Sum_probs=72.7

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCC-CcchHhHHHHHHH-HHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG-GQGEREFKAEVEI-ISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~-~~~~~~f~~Ei~i-l~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      ++|...+.||+|+||.||++.. .+|+.||||+++... ...+.++.+|+++ ++.++|+||++++++|..++..+||||
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~e   80 (283)
T cd06617           1 DDLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICME   80 (283)
T ss_pred             CCceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEhh
Confidence            3577788999999999999986 468999999997543 2334567777775 556799999999999999999999999


Q ss_pred             cCCCCCHHHHHhc
Q 011696          444 YVPNNTLYFHLHG  456 (479)
Q Consensus       444 y~~~GsL~~~L~~  456 (479)
                      ||+ |+|.++++.
T Consensus        81 ~~~-~~l~~~l~~   92 (283)
T cd06617          81 VMD-TSLDKFYKK   92 (283)
T ss_pred             hhc-ccHHHHHHH
Confidence            997 688877764

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.36  E-value=3.2e-12  Score=124.75  Aligned_cols=88  Identities=26%  Similarity=0.401  Sum_probs=71.4

Q ss_pred             ccccccccccCccceEEEEeC----CCCEEEEEEeecCC--CcchHhHHHHHHHHHhCCCCCccceEEEEEeCC------
Q 011696          369 FADQNLLGEGGFGSVYKGYLP----DGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDD------  436 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~~----~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~------  436 (479)
                      |...++||+|+||.||+|.+.    +++.||||+++...  ....++|.+|+++|++++|+||++++|++...+      
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   80 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLP   80 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCccc
Confidence            445678999999999999853    36789999997543  234567999999999999999999999987543      


Q ss_pred             eEEEEEecCCCCCHHHHHhc
Q 011696          437 RRLLIYDYVPNNTLYFHLHG  456 (479)
Q Consensus       437 ~~~LV~Ey~~~GsL~~~L~~  456 (479)
                      ..++++||+.+|+|.++++.
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~  100 (273)
T cd05074          81 IPMVILPFMKHGDLHTFLLM  100 (273)
T ss_pred             ceEEEEecCCCCcHHHHHHH
Confidence            23688999999999988763

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.36  E-value=2.7e-12  Score=127.36  Aligned_cols=112  Identities=22%  Similarity=0.320  Sum_probs=83.0

Q ss_pred             HhcCccccccccccCccceEEEEeC-CCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCC-----
Q 011696          365 ATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDD-----  436 (479)
Q Consensus       365 ~~~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~-----  436 (479)
                      ..++|...++||+|.||.||+|+.. +|+.||||+++....  .....+.+|++++++++|+||++++|+|.+.+     
T Consensus         5 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~~   84 (302)
T cd07864           5 CVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALDF   84 (302)
T ss_pred             hhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhhc
Confidence            3467888899999999999999974 588999999975432  23356889999999999999999999998765     


Q ss_pred             -----eEEEEEecCCCCCHHHHHhcC-CcccchhHHHHHHHHHHhhc
Q 011696          437 -----RRLLIYDYVPNNTLYFHLHGK-WQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       437 -----~~~LV~Ey~~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~~  477 (479)
                           ..+||+||+.+ +|..++..+ ..+.++....+..-++.++.
T Consensus        85 ~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~  130 (302)
T cd07864          85 KKDKGAFYLVFEYMDH-DLMGLLESGLVHFSEDHIKSFMKQLLEGLN  130 (302)
T ss_pred             cccCCcEEEEEcccCc-cHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence                 68899999986 677766643 23334444443333333333

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.35  E-value=2.1e-12  Score=131.16  Aligned_cols=90  Identities=30%  Similarity=0.451  Sum_probs=73.7

Q ss_pred             cCccccccccccCccceEEEEeC------CCCEEEEEEeecCCC-cchHhHHHHHHHHHhC-CCCCccceEEEEEeC-Ce
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGG-QGEREFKAEVEIISRI-HHRHLVSLVGYCISD-DR  437 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~------~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~-~~  437 (479)
                      ++|...++||+|+||.||+|...      .++.||||+++.... ...+.+.+|++++.++ +|+||++++|+|... +.
T Consensus         7 ~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~~~   86 (337)
T cd05054           7 DRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPGGP   86 (337)
T ss_pred             HHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCCCC
Confidence            45777899999999999999642      246899999975433 2345688999999999 899999999998755 45


Q ss_pred             EEEEEecCCCCCHHHHHhc
Q 011696          438 RLLIYDYVPNNTLYFHLHG  456 (479)
Q Consensus       438 ~~LV~Ey~~~GsL~~~L~~  456 (479)
                      .++||||+.+|+|.++|+.
T Consensus        87 ~~~v~ey~~~~~L~~~i~~  105 (337)
T cd05054          87 LMVIVEYCKFGNLSNYLRS  105 (337)
T ss_pred             EEEEEecCCCCCHHHHHHh
Confidence            7899999999999999864

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.35  E-value=2.5e-12  Score=128.46  Aligned_cols=89  Identities=22%  Similarity=0.372  Sum_probs=74.2

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC---cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      +.|...++||+|.||+||+|+. .+|+.||||+++....   ...++|.+|++++++++|+||++++|+|.+++..+|||
T Consensus        15 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv~   94 (307)
T cd06607          15 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLVM   94 (307)
T ss_pred             hhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEEH
Confidence            3466678899999999999986 4688999999864332   22357999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhc
Q 011696          443 DYVPNNTLYFHLHG  456 (479)
Q Consensus       443 Ey~~~GsL~~~L~~  456 (479)
                      ||+. |+|.+++..
T Consensus        95 e~~~-g~l~~~~~~  107 (307)
T cd06607          95 EYCL-GSASDILEV  107 (307)
T ss_pred             HhhC-CCHHHHHHH
Confidence            9997 577776653

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.35  E-value=1.6e-12  Score=139.01  Aligned_cols=94  Identities=20%  Similarity=0.263  Sum_probs=77.3

Q ss_pred             HHhcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCC----
Q 011696          364 KATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDD----  436 (479)
Q Consensus       364 ~~~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~----  436 (479)
                      ...++|...++||+|+||+||+++. .+|+.||||+++....  .+...+.+|+.+|.+++|.||+++++++...+    
T Consensus        29 ~~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~  108 (496)
T PTZ00283         29 EQAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNP  108 (496)
T ss_pred             ccCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCc
Confidence            3446788899999999999999974 5789999999975432  33457899999999999999999988776433    


Q ss_pred             ----eEEEEEecCCCCCHHHHHhcC
Q 011696          437 ----RRLLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       437 ----~~~LV~Ey~~~GsL~~~L~~~  457 (479)
                          ..+|||||+.+|+|.++|+.+
T Consensus       109 ~~~~~i~lV~Ey~~~gsL~~~l~~~  133 (496)
T PTZ00283        109 ENVLMIALVLDYANAGDLRQEIKSR  133 (496)
T ss_pred             ccceEEEEEEeCCCCCcHHHHHHHh
Confidence                357999999999999998754

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.35  E-value=3.6e-12  Score=127.14  Aligned_cols=90  Identities=37%  Similarity=0.638  Sum_probs=72.5

Q ss_pred             cCccccccccccCccceEEEEe-CCCC----EEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGR----EVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~----~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~L  440 (479)
                      ++|...++||+|+||.||+|.+ .+|+    .||+|.++.... ....+|.+|+.++++++|+||++++|+|... ..++
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~-~~~~   85 (303)
T cd05110           7 TELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSP-TIQL   85 (303)
T ss_pred             hhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCC-Ccee
Confidence            3456678899999999999985 3444    478888864332 2334799999999999999999999999754 4679


Q ss_pred             EEecCCCCCHHHHHhcC
Q 011696          441 IYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~  457 (479)
                      |+||+.+|+|.++++.+
T Consensus        86 v~e~~~~g~l~~~~~~~  102 (303)
T cd05110          86 VTQLMPHGCLLDYVHEH  102 (303)
T ss_pred             eehhcCCCCHHHHHHhc
Confidence            99999999999998754

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.34  E-value=2.8e-12  Score=126.28  Aligned_cols=88  Identities=22%  Similarity=0.437  Sum_probs=71.2

Q ss_pred             CccccccccccCccceEEEE-eCCCCEEEEEEeecCCCcc--hHhHHHHHHHHHhCCCCC-ccceEEEEEeCC------e
Q 011696          368 GFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQG--EREFKAEVEIISRIHHRH-LVSLVGYCISDD------R  437 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~-~~~g~~VAVK~l~~~~~~~--~~~f~~Ei~il~~l~HpN-Iv~LlG~~~~~~------~  437 (479)
                      .|...++||+|.||+||+|+ ..+|+.||+|+++....++  -..-++|+.+|++|+|.| ||+|+++|...+      .
T Consensus        12 ~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~~~   91 (323)
T KOG0594|consen   12 DYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGIGK   91 (323)
T ss_pred             HHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccccce
Confidence            34445779999999999998 4578999999998654431  134689999999999999 999999999888      7


Q ss_pred             EEEEEecCCCCCHHHHHhc
Q 011696          438 RLLIYDYVPNNTLYFHLHG  456 (479)
Q Consensus       438 ~~LV~Ey~~~GsL~~~L~~  456 (479)
                      ++|||||+.. ||..|+..
T Consensus        92 l~lvfe~~d~-DL~~ymd~  109 (323)
T KOG0594|consen   92 LYLVFEFLDR-DLKKYMDS  109 (323)
T ss_pred             EEEEEEeecc-cHHHHHHh
Confidence            8899999975 56666554

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.34  E-value=4.5e-12  Score=124.31  Aligned_cols=88  Identities=22%  Similarity=0.407  Sum_probs=74.3

Q ss_pred             ccccccccccCccceEEEEeC-CCCEEEEEEeecCC--CcchHhHHHHHHHHHhCCCCCccceEEEEEeC--CeEEEEEe
Q 011696          369 FADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISD--DRRLLIYD  443 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~--~~~~LV~E  443 (479)
                      |...++||+|+||.||+|+.. +|+.||||+++...  ....++|.+|++++++++|+||++++|+|.+.  +..+||||
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e   80 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFE   80 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEec
Confidence            345678999999999999864 57899999997553  33345799999999999999999999999988  78999999


Q ss_pred             cCCCCCHHHHHhcC
Q 011696          444 YVPNNTLYFHLHGK  457 (479)
Q Consensus       444 y~~~GsL~~~L~~~  457 (479)
                      |+.+ +|.++++.+
T Consensus        81 ~~~~-~l~~~~~~~   93 (287)
T cd07840          81 YMDH-DLTGLLDSP   93 (287)
T ss_pred             cccc-cHHHHHhcc
Confidence            9985 898888754

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.34  E-value=3e-13  Score=129.70  Aligned_cols=88  Identities=22%  Similarity=0.373  Sum_probs=77.4

Q ss_pred             ccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCC
Q 011696          369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~  447 (479)
                      |...++||+|.||.|||+.. ..|+.||||++-..  .+..++++||.||..++.++||+.+|-+.....++||||||.-
T Consensus        35 FDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~--sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVMEYCGA  112 (502)
T KOG0574|consen   35 FDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVD--TDLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVMEYCGA  112 (502)
T ss_pred             HHHHHHhcCCcchHHHHHHHhccCcEEEEEecCcc--chHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehhhcCC
Confidence            45567899999999999975 45899999998643  4567899999999999999999999999999999999999999


Q ss_pred             CCHHHHHhcCC
Q 011696          448 NTLYFHLHGKW  458 (479)
Q Consensus       448 GsL~~~L~~~~  458 (479)
                      |++.++++-++
T Consensus       113 GSiSDI~R~R~  123 (502)
T KOG0574|consen  113 GSISDIMRARR  123 (502)
T ss_pred             CcHHHHHHHhc
Confidence            99999887554

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.34  E-value=1.7e-12  Score=132.87  Aligned_cols=92  Identities=17%  Similarity=0.295  Sum_probs=76.7

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCc--chHhHHHHHHHHHhCCCCCccceEEEEEeCCe-EEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHHRHLVSLVGYCISDDR-RLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~-~~LV~  442 (479)
                      ++|...++||+|+||.+|..+. .+++.|++|+++.....  ..+.-++|++++++|+|+|||.+++.+++++. .+|||
T Consensus         4 ~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~Ivm   83 (426)
T KOG0589|consen    4 DNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCIVM   83 (426)
T ss_pred             chhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEEEE
Confidence            4456668899999999988764 36779999999755432  33468999999999999999999999999888 89999


Q ss_pred             ecCCCCCHHHHHhcCC
Q 011696          443 DYVPNNTLYFHLHGKW  458 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~  458 (479)
                      |||+||||.+.|..+.
T Consensus        84 ~Y~eGg~l~~~i~~~k   99 (426)
T KOG0589|consen   84 EYCEGGDLAQLIKEQK   99 (426)
T ss_pred             eecCCCCHHHHHHHHh
Confidence            9999999988877544

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.34  E-value=4.3e-13  Score=134.33  Aligned_cols=95  Identities=27%  Similarity=0.428  Sum_probs=74.7

Q ss_pred             ccccccccccCccceEEEE-eCCCCEEEEEEeecCCCcch-------HhHHHHHHHHHhCCCCCccceEEEEE-eCCeEE
Q 011696          369 FADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGE-------REFKAEVEIISRIHHRHLVSLVGYCI-SDDRRL  439 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~-~~~g~~VAVK~l~~~~~~~~-------~~f~~Ei~il~~l~HpNIv~LlG~~~-~~~~~~  439 (479)
                      |...++||+|+|.+|||++ +.+.+.||||+-..+..+..       +.-.+|.+|.+.|+|+.||+|++|+. +.+.+|
T Consensus       465 YLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtdsFC  544 (775)
T KOG1151|consen  465 YLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTDSFC  544 (775)
T ss_pred             HHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeeccccce
Confidence            4456789999999999998 56778899997654433221       23568999999999999999999986 566778


Q ss_pred             EEEecCCCCCHHHHHhcCCcccch
Q 011696          440 LIYDYVPNNTLYFHLHGKWQLGFD  463 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~~~~~~~  463 (479)
                      -|+|||+|.||..||.....+..+
T Consensus       545 TVLEYceGNDLDFYLKQhklmSEK  568 (775)
T KOG1151|consen  545 TVLEYCEGNDLDFYLKQHKLMSEK  568 (775)
T ss_pred             eeeeecCCCchhHHHHhhhhhhHH
Confidence            899999999999999865444333

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.34  E-value=6.5e-13  Score=130.93  Aligned_cols=83  Identities=31%  Similarity=0.551  Sum_probs=65.5

Q ss_pred             CccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCC-----eEEEE
Q 011696          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDD-----RRLLI  441 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~-----~~~LV  441 (479)
                      .|...++||.|.||.||+|.+ .+++.||||+...+.    +.--+|+++|++++|+|||+|+-+|....     ...||
T Consensus        25 ~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~----r~knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnlV  100 (364)
T KOG0658|consen   25 SYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDK----RYKNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNLV  100 (364)
T ss_pred             EEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCC----CcCcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHHH
Confidence            355668999999999999986 446899999986432    23457899999999999999999987432     23479


Q ss_pred             EecCCCCCHHHHHh
Q 011696          442 YDYVPNNTLYFHLH  455 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~  455 (479)
                      ||||+. +|+++++
T Consensus       101 leymP~-tL~~~~r  113 (364)
T KOG0658|consen  101 LEYMPE-TLYRVIR  113 (364)
T ss_pred             HHhchH-HHHHHHH
Confidence            999997 5777766

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.34  E-value=6.7e-12  Score=118.08  Aligned_cols=91  Identities=30%  Similarity=0.449  Sum_probs=79.6

Q ss_pred             ccccccccccCccceEEEEeCC-CCEEEEEEeecCCCc-chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCC
Q 011696          369 FADQNLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~~~-g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~  446 (479)
                      |...+.||+|+||.||+|...+ ++.|+||.+...... ..++|.+|++++.+++|.||+++++++...+..++|+||+.
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEYCE   80 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEeccC
Confidence            3456789999999999999755 789999999765544 56789999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcCCc
Q 011696          447 NNTLYFHLHGKWQ  459 (479)
Q Consensus       447 ~GsL~~~L~~~~~  459 (479)
                      +++|.++++....
T Consensus        81 ~~~L~~~~~~~~~   93 (225)
T smart00221       81 GGDLFDYLRKKGG   93 (225)
T ss_pred             CCCHHHHHHhccc
Confidence            9999999886543

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.34  E-value=6.2e-12  Score=124.10  Aligned_cols=89  Identities=25%  Similarity=0.434  Sum_probs=69.4

Q ss_pred             CccccccccccCccceEEEEe--CCCCEEEEEEeecCCCc--chHhHHHHHHHHHhC---CCCCccceEEEEEe-----C
Q 011696          368 GFADQNLLGEGGFGSVYKGYL--PDGREVAIKQLKIGGGQ--GEREFKAEVEIISRI---HHRHLVSLVGYCIS-----D  435 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~--~~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l---~HpNIv~LlG~~~~-----~  435 (479)
                      +|...+.||+|+||+||+|+.  .+|+.||||+++.....  ....+.+|+++++++   +|+||++++|+|..     .
T Consensus         2 ~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~   81 (290)
T cd07862           2 QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRE   81 (290)
T ss_pred             CcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCCC
Confidence            566778999999999999985  34678999998754322  234677888777765   69999999999963     3


Q ss_pred             CeEEEEEecCCCCCHHHHHhcC
Q 011696          436 DRRLLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       436 ~~~~LV~Ey~~~GsL~~~L~~~  457 (479)
                      ...+|||||+. |+|.++++..
T Consensus        82 ~~~~lv~e~~~-~~l~~~~~~~  102 (290)
T cd07862          82 TKLTLVFEHVD-QDLTTYLDKV  102 (290)
T ss_pred             CcEEEEEccCC-CCHHHHHHhC
Confidence            45789999996 6898888753

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.33  E-value=1.1e-11  Score=128.47  Aligned_cols=106  Identities=15%  Similarity=0.161  Sum_probs=84.4

Q ss_pred             cCccccccccccCccceEEEEeC---CCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP---DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~---~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      .+|...+.||+|+||.||++...   .++.||||.+...     +.+.+|+++|++|+|+|||++++++...+..+||||
T Consensus        92 ~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~-----~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~e  166 (392)
T PHA03207         92 MQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG-----KTPGREIDILKTISHRAIINLIHAYRWKSTVCMVMP  166 (392)
T ss_pred             CceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc-----ccHHHHHHHHHhcCCCCccceeeeEeeCCEEEEEeh
Confidence            56888899999999999999753   3567999987532     356789999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          444 YVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       444 y~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |+. |+|++++..+..+.++...++..-++.++.|
T Consensus       167 ~~~-~~l~~~l~~~~~l~~~~~~~i~~ql~~aL~~  200 (392)
T PHA03207        167 KYK-CDLFTYVDRSGPLPLEQAITIQRRLLEALAY  200 (392)
T ss_pred             hcC-CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            996 6888888655556666666655555555544

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.33  E-value=6.4e-12  Score=121.88  Aligned_cols=106  Identities=24%  Similarity=0.190  Sum_probs=81.3

Q ss_pred             ccccccCccceEEEEe-CCCCEEEEEEeecCCC---cchHhHHHHHHHH-HhCCCCCccceEEEEEeCCeEEEEEecCCC
Q 011696          373 NLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---QGEREFKAEVEII-SRIHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~---~~~~~f~~Ei~il-~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~  447 (479)
                      +.||+|+||.||+|.. .+|+.||||+++....   ....++..|..++ ..++|+||++++++|.+++..+|||||+.+
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   81 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNG   81 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCC
Confidence            4699999999999986 4688999999864332   2223455665554 455999999999999999999999999999


Q ss_pred             CCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          448 NTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       448 GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |+|.++++....+.+++..++..-++.++.|
T Consensus        82 ~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~  112 (260)
T cd05611          82 GDCASLIKTLGGLPEDWAKQYIAEVVLGVED  112 (260)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999876666666666665555555544

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.33  E-value=3.6e-12  Score=122.82  Aligned_cols=89  Identities=22%  Similarity=0.438  Sum_probs=77.0

Q ss_pred             CccccccccccCccceEEEEe-CCCCEEEEEEeecCC--CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      +|...++||+|+||.||++.. .+|+.|+||+++...  .....+|.+|++++++++|+||+++++++.+.+..++||||
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   80 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVMEY   80 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEehh
Confidence            366678999999999999974 467899999987533  23345789999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhc
Q 011696          445 VPNNTLYFHLHG  456 (479)
Q Consensus       445 ~~~GsL~~~L~~  456 (479)
                      +.+++|.++++.
T Consensus        81 ~~~~~L~~~~~~   92 (256)
T cd08530          81 APFGDLSKAISK   92 (256)
T ss_pred             cCCCCHHHHHHH
Confidence            999999998875

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.33  E-value=2.4e-12  Score=135.65  Aligned_cols=88  Identities=27%  Similarity=0.398  Sum_probs=75.2

Q ss_pred             HhcCccccccccccCccceEEEEeC-CCCEEEEEEeecCC---CcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEE
Q 011696          365 ATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRL  439 (479)
Q Consensus       365 ~~~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~  439 (479)
                      ..++|....+||+|.||+|++++++ +++.+|||.|+...   .++.+....|.+|+.-. +|+.|++|++++...+.+|
T Consensus       366 ~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l~  445 (694)
T KOG0694|consen  366 TLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEHLF  445 (694)
T ss_pred             cccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCeEE
Confidence            3467888999999999999999874 57789999998655   34556688888888877 5999999999999999999


Q ss_pred             EEEecCCCCCHHH
Q 011696          440 LIYDYVPNNTLYF  452 (479)
Q Consensus       440 LV~Ey~~~GsL~~  452 (479)
                      +||||+.||||..
T Consensus       446 fvmey~~Ggdm~~  458 (694)
T KOG0694|consen  446 FVMEYVAGGDLMH  458 (694)
T ss_pred             EEEEecCCCcEEE
Confidence            9999999999643

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.33  E-value=5.4e-12  Score=124.74  Aligned_cols=89  Identities=20%  Similarity=0.377  Sum_probs=73.8

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCC-CCCccceEEEEEeCCe-----
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIH-HRHLVSLVGYCISDDR-----  437 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~-HpNIv~LlG~~~~~~~-----  437 (479)
                      ++|...++||+|+||.||+|+. .+|+.||||+++....  ...++|.+|+++|++++ |+||+++++++...+.     
T Consensus         1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~   80 (295)
T cd07837           1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPS   80 (295)
T ss_pred             CCceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCce
Confidence            3577789999999999999986 4688999999865432  23357899999999995 6999999999987766     


Q ss_pred             EEEEEecCCCCCHHHHHhc
Q 011696          438 RLLIYDYVPNNTLYFHLHG  456 (479)
Q Consensus       438 ~~LV~Ey~~~GsL~~~L~~  456 (479)
                      .|||||||.+ +|.++++.
T Consensus        81 ~~lv~e~~~~-~l~~~~~~   98 (295)
T cd07837          81 LYLVFEYLDS-DLKKFMDS   98 (295)
T ss_pred             EEEEeeccCc-CHHHHHHH
Confidence            7999999995 79888865

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.32  E-value=7.4e-12  Score=125.03  Aligned_cols=111  Identities=20%  Similarity=0.297  Sum_probs=82.3

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcc--hHhHHHHHHHHHhCCCCCccceEEEEEeC--CeEEE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQG--EREFKAEVEIISRIHHRHLVSLVGYCISD--DRRLL  440 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~--~~~f~~Ei~il~~l~HpNIv~LlG~~~~~--~~~~L  440 (479)
                      .++|...++||+|+||+||+|.. .+|+.||||+++......  ...+.+|+++|++++|+||+++++++.+.  +..+|
T Consensus         6 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   85 (309)
T cd07845           6 VTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIFL   85 (309)
T ss_pred             ccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEEE
Confidence            35678889999999999999986 458899999997543322  23578899999999999999999999765  46799


Q ss_pred             EEecCCCCCHHHHHhcC-CcccchhHHHHHHHHHHhhc
Q 011696          441 IYDYVPNNTLYFHLHGK-WQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~~  477 (479)
                      ||||+.+ +|.+++... ..+.++....+..-++.++.
T Consensus        86 v~e~~~~-~l~~~l~~~~~~l~~~~~~~~~~qi~~~l~  122 (309)
T cd07845          86 VMEYCEQ-DLASLLDNMPTPFSESQVKCLMLQLLRGLQ  122 (309)
T ss_pred             EEecCCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence            9999975 788877643 33444444444443444333

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.32  E-value=6.8e-12  Score=126.03  Aligned_cols=87  Identities=25%  Similarity=0.413  Sum_probs=73.2

Q ss_pred             ccccccccccCccceEEEEe-CCCCEEEEEEeecCCC---cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      |...+.||+|+||.||+|.. .+|+.||||++.....   ...++|.+|+++|++++|+||++++|+|.+++..+|||||
T Consensus        27 f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  106 (317)
T cd06635          27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVMEY  106 (317)
T ss_pred             hhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEEeC
Confidence            56678899999999999985 4688999999864322   2335799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhc
Q 011696          445 VPNNTLYFHLHG  456 (479)
Q Consensus       445 ~~~GsL~~~L~~  456 (479)
                      +. |+|.++++.
T Consensus       107 ~~-g~l~~~~~~  117 (317)
T cd06635         107 CL-GSASDLLEV  117 (317)
T ss_pred             CC-CCHHHHHHH
Confidence            96 578777753

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.32  E-value=4.3e-12  Score=121.98  Aligned_cols=102  Identities=25%  Similarity=0.356  Sum_probs=81.6

Q ss_pred             ccccCccceEEEEeC-CCCEEEEEEeecCCCc---chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCCCH
Q 011696          375 LGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ---GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL  450 (479)
Q Consensus       375 IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~---~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~GsL  450 (479)
                      ||+|+||.||++... +++.|+||.++.....   ..++|.+|+++|++++|+||+++++++..++..++||||+.+++|
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L   80 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGEL   80 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCcH
Confidence            799999999999864 5889999998754332   345799999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcccchhHHHHHHHHHHhh
Q 011696          451 YFHLHGKWQLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       451 ~~~L~~~~~~~~~~~~~~~~l~~~~~  476 (479)
                      .+++..+..+.+.....+..-++.++
T Consensus        81 ~~~l~~~~~l~~~~~~~~~~qi~~~l  106 (250)
T cd05123          81 FSHLSKEGRFSEERARFYAAEIVLAL  106 (250)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            99998765544444444433333333

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.32  E-value=5e-12  Score=127.90  Aligned_cols=94  Identities=21%  Similarity=0.303  Sum_probs=77.1

Q ss_pred             HHHHhcCccccccccccCccceEEEEe-CCCCEEEEEEeecCC--CcchHhHHHHHHHHHhCCCCCccceEEEEEe-CCe
Q 011696          362 LVKATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCIS-DDR  437 (479)
Q Consensus       362 l~~~~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~-~~~  437 (479)
                      +...+++|...++||+|+||.||++.. .+|+.||||++....  ....+++.+|+++|++++|+||++++++|.. .+.
T Consensus         5 ~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~   84 (328)
T cd07856           5 VFEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPLED   84 (328)
T ss_pred             eeccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCCc
Confidence            344567888899999999999999984 478899999886422  2334678899999999999999999999876 557


Q ss_pred             EEEEEecCCCCCHHHHHhc
Q 011696          438 RLLIYDYVPNNTLYFHLHG  456 (479)
Q Consensus       438 ~~LV~Ey~~~GsL~~~L~~  456 (479)
                      .+||+||+ +++|.+++++
T Consensus        85 ~~lv~e~~-~~~L~~~~~~  102 (328)
T cd07856          85 IYFVTELL-GTDLHRLLTS  102 (328)
T ss_pred             EEEEeehh-ccCHHHHHhc
Confidence            88999998 5689888764

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.32  E-value=8e-12  Score=120.73  Aligned_cols=90  Identities=19%  Similarity=0.416  Sum_probs=74.9

Q ss_pred             CccccccccccCccceEEEEe-CCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCC-eEEEEEe
Q 011696          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDD-RRLLIYD  443 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~-~~~LV~E  443 (479)
                      +|...++||+|+||.||++.. .+++.||||++.....  ...+.+.+|++++++++|+||+++++++...+ ..+||||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e   80 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMG   80 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEec
Confidence            466778999999999999985 4578899999975432  33457999999999999999999999876544 5789999


Q ss_pred             cCCCCCHHHHHhcC
Q 011696          444 YVPNNTLYFHLHGK  457 (479)
Q Consensus       444 y~~~GsL~~~L~~~  457 (479)
                      |+.+|+|.++++..
T Consensus        81 ~~~~~~l~~~l~~~   94 (257)
T cd08223          81 FCEGGDLYHKLKEQ   94 (257)
T ss_pred             ccCCCcHHHHHHHh
Confidence            99999999998753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.32  E-value=5.3e-12  Score=127.82  Aligned_cols=91  Identities=18%  Similarity=0.332  Sum_probs=74.2

Q ss_pred             hcCccccccccccCccceEEEEeC-CCCEEEEEEeecC--CCcchHhHHHHHHHHHhC-CCCCccceEEEEEeCC--eEE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIG--GGQGEREFKAEVEIISRI-HHRHLVSLVGYCISDD--RRL  439 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~--~~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~--~~~  439 (479)
                      .++|...++||+|+||.||+|... +|+.||||++...  .......+.+|+.+|+++ +|+||++++|+|...+  ..+
T Consensus         6 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~~   85 (337)
T cd07852           6 LRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDIY   85 (337)
T ss_pred             hhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceEE
Confidence            356777789999999999999864 5788999988532  223345688999999999 9999999999987543  578


Q ss_pred             EEEecCCCCCHHHHHhcC
Q 011696          440 LIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~  457 (479)
                      |||||+. |+|.++++++
T Consensus        86 lv~e~~~-~~L~~~~~~~  102 (337)
T cd07852          86 LVFEYME-TDLHAVIRAN  102 (337)
T ss_pred             EEecccc-cCHHHHHhcC
Confidence            9999997 5999988765

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.31  E-value=6.5e-12  Score=127.91  Aligned_cols=118  Identities=14%  Similarity=0.206  Sum_probs=86.9

Q ss_pred             cHHHHHHHhcCccccccccccCccceEEEEe-CCCCEEEEEEeecCC--CcchHhHHHHHHHHHhCCCCCccceEEEEEe
Q 011696          358 TYEELVKATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCIS  434 (479)
Q Consensus       358 ~~eel~~~~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~  434 (479)
                      ..+++....++|...+.||+|+||.||+|.. .+|+.||||+++...  ....+.+.+|+++|++++|+||++++++|..
T Consensus         8 ~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~   87 (345)
T cd07877           8 LNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTP   87 (345)
T ss_pred             HHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeeee
Confidence            3456677789999999999999999999984 568899999997432  2234578899999999999999999999864


Q ss_pred             C------CeEEEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhc
Q 011696          435 D------DRRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       435 ~------~~~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~  477 (479)
                      .      +..++|+||+ +|+|.+++..+ .+.++....+..-++.++.
T Consensus        88 ~~~~~~~~~~~lv~~~~-~~~L~~~~~~~-~l~~~~~~~i~~qi~~aL~  134 (345)
T cd07877          88 ARSLEEFNDVYLVTHLM-GADLNNIVKCQ-KLTDDHVQFLIYQILRGLK  134 (345)
T ss_pred             cccccccccEEEEehhc-ccCHHHHHhcC-CCCHHHHHHHHHHHHHHHH
Confidence            3      2356777776 78998877643 3444444444333344443

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.31  E-value=2.9e-12  Score=130.55  Aligned_cols=106  Identities=18%  Similarity=0.204  Sum_probs=83.0

Q ss_pred             CccccccccccCccceEEEE-eCCCCEEEEEEeecCCCcc--hHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          368 GFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQG--EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~-~~~g~~VAVK~l~~~~~~~--~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      -|..++.||+|.|++|-+++ .-.|++||||.+.....++  ...+.+|++.|+-++|+|||+|+.+......+|||+|+
T Consensus        19 LYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiLEL   98 (864)
T KOG4717|consen   19 LYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLILEL   98 (864)
T ss_pred             eehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEEEEe
Confidence            35566789999999998885 2389999999996544333  34789999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCC-cccchhHHHHHHHHH
Q 011696          445 VPNNTLYFHLHGKW-QLGFDIRNHNNGLLI  473 (479)
Q Consensus       445 ~~~GsL~~~L~~~~-~~~~~~~~~~~~l~~  473 (479)
                      -.+|||++|+.... -+..++.+.++...+
T Consensus        99 GD~GDl~DyImKHe~Gl~E~La~kYF~QI~  128 (864)
T KOG4717|consen   99 GDGGDLFDYIMKHEEGLNEDLAKKYFAQIV  128 (864)
T ss_pred             cCCchHHHHHHhhhccccHHHHHHHHHHHH
Confidence            99999999985422 234455444444333

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.31  E-value=1.1e-11  Score=122.12  Aligned_cols=104  Identities=24%  Similarity=0.262  Sum_probs=75.7

Q ss_pred             cccccCccceEEEEe-CCCCEEEEEEeecCCC---cchHhHHHHHHHH---HhCCCCCccceEEEEEeCCeEEEEEecCC
Q 011696          374 LLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---QGEREFKAEVEII---SRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (479)
Q Consensus       374 ~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~---~~~~~f~~Ei~il---~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~  446 (479)
                      +||+|+||.||++.. .+|+.||||.++....   ...+.+.+|..++   ...+|+||+++++++..++..++|||||.
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   80 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMN   80 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCC
Confidence            489999999999986 4688999999864322   1223355555433   34589999999999999999999999999


Q ss_pred             CCCHHHHHhcCCcccchhHHHHHHHHHHhhc
Q 011696          447 NNTLYFHLHGKWQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       447 ~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~  477 (479)
                      +|+|.++++.+..+.++....+..-++.++.
T Consensus        81 ~~~L~~~i~~~~~l~~~~~~~i~~qi~~al~  111 (279)
T cd05633          81 GGDLHYHLSQHGVFSEKEMRFYATEIILGLE  111 (279)
T ss_pred             CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            9999999886655555554444433444443

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.31  E-value=8.5e-12  Score=127.59  Aligned_cols=90  Identities=18%  Similarity=0.279  Sum_probs=72.4

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCC--CcchHhHHHHHHHHHhCCCCCccceEEEEEeCC------
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDD------  436 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~------  436 (479)
                      .++|...++||+|+||.||+++. .+|+.||||+++...  ....+++.+|+++|++++|+||++++++|...+      
T Consensus        20 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~   99 (359)
T cd07876          20 LKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEFQ   99 (359)
T ss_pred             hhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCccccc
Confidence            46788889999999999999985 458899999996432  233457899999999999999999999986543      


Q ss_pred             eEEEEEecCCCCCHHHHHhc
Q 011696          437 RRLLIYDYVPNNTLYFHLHG  456 (479)
Q Consensus       437 ~~~LV~Ey~~~GsL~~~L~~  456 (479)
                      ..|||||||.+ +|.++++.
T Consensus       100 ~~~lv~e~~~~-~l~~~~~~  118 (359)
T cd07876         100 DVYLVMELMDA-NLCQVIHM  118 (359)
T ss_pred             eeEEEEeCCCc-CHHHHHhc
Confidence            46899999976 46555543

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.31  E-value=1.1e-11  Score=126.84  Aligned_cols=107  Identities=16%  Similarity=0.168  Sum_probs=82.1

Q ss_pred             HhcCccccccccccCccceEEEEeC-CCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          365 ATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       365 ~~~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      ...+|...+.||+|+||+||+|+.. +++.||||....      ..+.+|+.+|++++|+|||+++++|...+..+||||
T Consensus        64 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~------~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  137 (357)
T PHA03209         64 ASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQK------GTTLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVLP  137 (357)
T ss_pred             hhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCc------cccHHHHHHHHhCCCCCCcChhheEEeCCeeEEEEE
Confidence            3467889999999999999999864 467899997532      235679999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcC-CcccchhHHHHHHHHHHhhcc
Q 011696          444 YVPNNTLYFHLHGK-WQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       444 y~~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |+. |+|+++|..+ ..+.++...++..-++.++.|
T Consensus       138 ~~~-~~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~  172 (357)
T PHA03209        138 HYS-SDLYTYLTKRSRPLPIDQALIIEKQILEGLRY  172 (357)
T ss_pred             ccC-CcHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence            994 6898888653 234444444444444445444

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.30  E-value=6.2e-12  Score=127.50  Aligned_cols=111  Identities=14%  Similarity=0.199  Sum_probs=85.2

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecC--CCcchHhHHHHHHHHHhCCCCCccceEEEEEeCC-----eE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIG--GGQGEREFKAEVEIISRIHHRHLVSLVGYCISDD-----RR  438 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~--~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~-----~~  438 (479)
                      ++|...++||+|+||+||+|.. .+|+.||||+++..  ......++.+|+.+|++++|+||++++|+|...+     ..
T Consensus         5 ~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~   84 (337)
T cd07858           5 TKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFNDV   84 (337)
T ss_pred             cceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCcE
Confidence            4677788999999999999985 46889999998643  2233457889999999999999999999987543     47


Q ss_pred             EEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          439 LLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      +|||||+. |+|.+++..+..+.++....+..-++.++.|
T Consensus        85 ~lv~e~~~-~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~  123 (337)
T cd07858          85 YIVYELMD-TDLHQIIRSSQTLSDDHCQYFLYQLLRGLKY  123 (337)
T ss_pred             EEEEeCCC-CCHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            89999996 7898888766555555555555545544443

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.30  E-value=4.6e-12  Score=128.21  Aligned_cols=111  Identities=15%  Similarity=0.178  Sum_probs=85.4

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCC--CcchHhHHHHHHHHHhCCCCCccceEEEEEe----CCeEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCIS----DDRRL  439 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~----~~~~~  439 (479)
                      ++|...++||+|+||.||+|.. .+|+.||||+++...  ....+.+.+|+.+|++++|+||++++++|..    ....+
T Consensus         5 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   84 (334)
T cd07855           5 SRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDVY   84 (334)
T ss_pred             hceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceEE
Confidence            5677888999999999999985 468899999987532  2334578899999999999999999998863    34678


Q ss_pred             EEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          440 LIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||||+. |+|.++++.+..+.++....+..-++.++.|
T Consensus        85 lv~e~~~-~~l~~~~~~~~~~~~~~~~~i~~qi~~aL~~  122 (334)
T cd07855          85 VVMDLME-SDLHHIIHSDQPLTEEHIRYFLYQLLRGLKY  122 (334)
T ss_pred             EEEehhh-hhHHHHhccCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999996 6899998766555555555555444444444

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.30  E-value=5.6e-12  Score=128.70  Aligned_cols=85  Identities=14%  Similarity=0.200  Sum_probs=66.6

Q ss_pred             HhcCccccccccccCccceEEEEeC--CCCEEEEEEeecCC-----CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCe
Q 011696          365 ATDGFADQNLLGEGGFGSVYKGYLP--DGREVAIKQLKIGG-----GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDR  437 (479)
Q Consensus       365 ~~~~f~~~~~IG~G~fG~Vykg~~~--~g~~VAVK~l~~~~-----~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~  437 (479)
                      ..++|...++||+|+||+||+|.+.  +++.||||++....     ....+.|.+|+++|++|+|.||+..+..+   +.
T Consensus        16 ~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~~---~~   92 (365)
T PRK09188         16 LSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLAT---GK   92 (365)
T ss_pred             ccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEEc---CC
Confidence            4467888899999999999999863  57778999875321     12245699999999999999999644322   45


Q ss_pred             EEEEEecCCCCCHHH
Q 011696          438 RLLIYDYVPNNTLYF  452 (479)
Q Consensus       438 ~~LV~Ey~~~GsL~~  452 (479)
                      .|||||||.+++|+.
T Consensus        93 ~~LVmE~~~G~~L~~  107 (365)
T PRK09188         93 DGLVRGWTEGVPLHL  107 (365)
T ss_pred             cEEEEEccCCCCHHH
Confidence            799999999999963

>PTZ00284 protein kinase; Provisional

Probab=99.30  E-value=1.8e-11  Score=129.95  Aligned_cols=117  Identities=16%  Similarity=0.172  Sum_probs=81.0

Q ss_pred             HHHHHHhcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCC------CccceEEEE
Q 011696          360 EELVKATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHR------HLVSLVGYC  432 (479)
Q Consensus       360 eel~~~~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~Hp------NIv~LlG~~  432 (479)
                      +++....++|...++||+|+||+||+|+. .+++.||||+++... ...+++.+|+++|.+++|.      ||++++++|
T Consensus       122 ~~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~  200 (467)
T PTZ00284        122 EDIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVP-KYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYF  200 (467)
T ss_pred             CccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecch-hhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEE
Confidence            44445567899999999999999999985 457889999996432 2234566677777766554      588999988


Q ss_pred             EeC-CeEEEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          433 ISD-DRRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       433 ~~~-~~~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ..+ +..||||||+ +|+|+++|..+..+.+.....+..-++.+|.|
T Consensus       201 ~~~~~~~~iv~~~~-g~~l~~~l~~~~~l~~~~~~~i~~qi~~aL~y  246 (467)
T PTZ00284        201 QNETGHMCIVMPKY-GPCLLDWIMKHGPFSHRHLAQIIFQTGVALDY  246 (467)
T ss_pred             EcCCceEEEEEecc-CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            765 4577888887 77888888765554444444443333344433

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.30  E-value=1.2e-11  Score=124.87  Aligned_cols=86  Identities=15%  Similarity=0.223  Sum_probs=72.7

Q ss_pred             cccccc--CccceEEEEe-CCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCC
Q 011696          373 NLLGEG--GFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (479)
Q Consensus       373 ~~IG~G--~fG~Vykg~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~  447 (479)
                      ..||+|  +||+||++.. .+|+.||||+++....  ...+.|.+|+.+++.++|+||++++++|..++..++|||||.+
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~~   83 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMAY   83 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEecccC
Confidence            356666  8899999985 4789999999875432  2335789999999999999999999999999999999999999


Q ss_pred             CCHHHHHhcCC
Q 011696          448 NTLYFHLHGKW  458 (479)
Q Consensus       448 GsL~~~L~~~~  458 (479)
                      |+|.+++....
T Consensus        84 ~~l~~~l~~~~   94 (328)
T cd08226          84 GSANSLLKTYF   94 (328)
T ss_pred             CCHHHHHHhhc
Confidence            99999887644

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.30  E-value=1.1e-11  Score=123.33  Aligned_cols=109  Identities=18%  Similarity=0.321  Sum_probs=80.0

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCc--chHhHHHHHHHHHhCCCCCccceEEEEEeCCe------
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHHRHLVSLVGYCISDDR------  437 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~------  437 (479)
                      ++|...++||+|+||.||+|.. .+++.||||++......  ....+.+|+++|++++|+||++++++|...+.      
T Consensus        12 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   91 (310)
T cd07865          12 SKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNRYK   91 (310)
T ss_pred             hheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccCCC
Confidence            5688889999999999999986 46889999998644322  23457789999999999999999999986543      


Q ss_pred             --EEEEEecCCCCCHHHHHhcCC-cccchhHHHHHHHHHHhh
Q 011696          438 --RLLIYDYVPNNTLYFHLHGKW-QLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       438 --~~LV~Ey~~~GsL~~~L~~~~-~~~~~~~~~~~~l~~~~~  476 (479)
                        .+|||||+.+ +|.+++..+. .+.++....+..-++.++
T Consensus        92 ~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~al  132 (310)
T cd07865          92 GSFYLVFEFCEH-DLAGLLSNKNVKFTLSEIKKVMKMLLNGL  132 (310)
T ss_pred             ceEEEEEcCCCc-CHHHHHHhcccCCCHHHHHHHHHHHHHHH
Confidence              4899999975 7887776543 333333333333333333

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.30  E-value=4.7e-12  Score=124.50  Aligned_cols=108  Identities=19%  Similarity=0.294  Sum_probs=82.0

Q ss_pred             ccccccccccCccceEEEEe-CCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      |...++||+|+||+||+|+. .+|+.||+|+++....  ...+++.+|+++|++++|+||+++++++.+.+..+||+||+
T Consensus         2 y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   81 (284)
T cd07839           2 YEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFEYC   81 (284)
T ss_pred             ceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEecC
Confidence            56678899999999999986 4688999999975432  22356889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcC-CcccchhHHHHHHHHHHhhc
Q 011696          446 PNNTLYFHLHGK-WQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       446 ~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~~  477 (479)
                      . |+|.++++.. ..+.++....+..-++.++.
T Consensus        82 ~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~  113 (284)
T cd07839          82 D-QDLKKYFDSCNGDIDPEIVKSFMFQLLKGLA  113 (284)
T ss_pred             C-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            7 5788877642 33344444444433444443

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.30  E-value=9.9e-12  Score=131.02  Aligned_cols=108  Identities=19%  Similarity=0.298  Sum_probs=76.2

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeC--------C
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISD--------D  436 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~--------~  436 (479)
                      .++|...++||+|+||+||+|+. .+++.||||++...    ...+.+|+.+|++++|+|||+|++++...        .
T Consensus        65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~----~~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~~  140 (440)
T PTZ00036         65 NKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQD----PQYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKNI  140 (440)
T ss_pred             CCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecC----cchHHHHHHHHHhcCCCCCcceeeeEeecccccCCCce
Confidence            45688899999999999999986 46889999988532    23456799999999999999999987532        1


Q ss_pred             eEEEEEecCCCCCHHHHHh----cCCcccchhHHHHHHHHHHhhcc
Q 011696          437 RRLLIYDYVPNNTLYFHLH----GKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       437 ~~~LV~Ey~~~GsL~~~L~----~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      .++||||||.+ +|.++++    .+..+.+.+...+..-++.++.|
T Consensus       141 ~l~lvmE~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~y  185 (440)
T PTZ00036        141 FLNVVMEFIPQ-TVHKYMKHYARNNHALPLFLVKLYSYQLCRALAY  185 (440)
T ss_pred             EEEEEEecCCc-cHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            35689999985 5655543    22333444444443334444433

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.30  E-value=5e-12  Score=127.35  Aligned_cols=108  Identities=15%  Similarity=0.190  Sum_probs=84.4

Q ss_pred             CccccccccccCccceEEEEeC-CCCEEEEEEeecCC--CcchHhHHHHHHHHHhCCCCCccceEEEEEeCC-----eEE
Q 011696          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDD-----RRL  439 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~-----~~~  439 (479)
                      +|...++||+|+||.||+|... +|+.||||++....  ....+.|.+|+++|+.++|+||++++|+|...+     ..|
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVY   80 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceE
Confidence            3667789999999999999864 48899999997543  334567999999999999999999999998775     789


Q ss_pred             EEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhh
Q 011696          440 LIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~  476 (479)
                      |||||+. ++|.++++.++.+.++....+..-++.++
T Consensus        81 lv~e~~~-~~l~~~l~~~~~l~~~~~~~i~~~l~~~l  116 (330)
T cd07834          81 IVTELME-TDLHKVIKSPQPLTDDHIQYFLYQILRGL  116 (330)
T ss_pred             EEecchh-hhHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence            9999998 58999988766555544444433333333

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.29  E-value=1.4e-11  Score=120.84  Aligned_cols=107  Identities=21%  Similarity=0.272  Sum_probs=78.6

Q ss_pred             ccccccccccCccceEEEEe-CCCCEEEEEEeecCC-CcchHhHHHHHHHHHhCC-CCCccceEEEEEeC--CeEEEEEe
Q 011696          369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG-GQGEREFKAEVEIISRIH-HRHLVSLVGYCISD--DRRLLIYD  443 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~-HpNIv~LlG~~~~~--~~~~LV~E  443 (479)
                      |...++||+|+||.||+|+. .+++.||||+++... .....++.+|+.+|.++. |+||++++|+|.+.  +..+||||
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e   80 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVFE   80 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEe
Confidence            34567899999999999985 468899999986432 233345678999999995 99999999999987  88899999


Q ss_pred             cCCCCCHHHHHhcCC-cccchhHHHHHHHHHHhh
Q 011696          444 YVPNNTLYFHLHGKW-QLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       444 y~~~GsL~~~L~~~~-~~~~~~~~~~~~l~~~~~  476 (479)
                      |+. |+|++++..+. .+.++....+..-++.++
T Consensus        81 ~~~-~~l~~~l~~~~~~~~~~~~~~~~~qi~~~L  113 (282)
T cd07831          81 LMD-MNLYELIKGRKRPLPEKRVKSYMYQLLKSL  113 (282)
T ss_pred             cCC-ccHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence            997 58888887543 333333333333333333

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.29  E-value=1.4e-11  Score=123.01  Aligned_cols=86  Identities=27%  Similarity=0.485  Sum_probs=71.5

Q ss_pred             ccccccccccCccceEEEEeC---CCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeC--CeEEE
Q 011696          369 FADQNLLGEGGFGSVYKGYLP---DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISD--DRRLL  440 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~~---~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~--~~~~L  440 (479)
                      |...++||+|+||.||+|+..   +++.||||.++...   ....+.+.+|++++++++|+||++++++|.+.  +..+|
T Consensus         2 y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   81 (316)
T cd07842           2 YEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVYL   81 (316)
T ss_pred             ceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEEE
Confidence            566788999999999999864   47899999997533   33345788999999999999999999999988  78899


Q ss_pred             EEecCCCCCHHHHHh
Q 011696          441 IYDYVPNNTLYFHLH  455 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~  455 (479)
                      ||||+.+ +|.+++.
T Consensus        82 v~e~~~~-~l~~~~~   95 (316)
T cd07842          82 LFDYAEH-DLWQIIK   95 (316)
T ss_pred             EEeCCCc-CHHHHHH
Confidence            9999985 5666553

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.29  E-value=1.2e-11  Score=125.91  Aligned_cols=111  Identities=18%  Similarity=0.235  Sum_probs=82.2

Q ss_pred             HhcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCC-----
Q 011696          365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDD-----  436 (479)
Q Consensus       365 ~~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~-----  436 (479)
                      ..++|...+.||+|+||.||+|.. .+|+.||||+++....  ...+++.+|+++|++++|+||++++++|..++     
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07880          13 VPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDRF   92 (343)
T ss_pred             cccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCcccccc
Confidence            356788889999999999999974 5688999999864322  22346889999999999999999999987654     


Q ss_pred             -eEEEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhc
Q 011696          437 -RRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       437 -~~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~  477 (479)
                       ..+|||||+ +++|.++++.+ .+.+++...+..-++.++.
T Consensus        93 ~~~~lv~e~~-~~~l~~~~~~~-~l~~~~~~~i~~qi~~al~  132 (343)
T cd07880          93 HDFYLVMPFM-GTDLGKLMKHE-KLSEDRIQFLVYQMLKGLK  132 (343)
T ss_pred             ceEEEEEecC-CCCHHHHHhcC-CCCHHHHHHHHHHHHHHHH
Confidence             358999999 77898877643 3444444444433334333

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.28  E-value=5.3e-12  Score=122.47  Aligned_cols=88  Identities=24%  Similarity=0.309  Sum_probs=71.1

Q ss_pred             ccccccccccCccceEEEEeCC-CCEEEEEEeecCC-----CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          369 FADQNLLGEGGFGSVYKGYLPD-GREVAIKQLKIGG-----GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~~~-g~~VAVK~l~~~~-----~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      |...++||+|+||.||++.... +..+++|.++...     ..+..++.+|++++++++|+||++++++|.+.+..+|||
T Consensus         2 y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   81 (260)
T cd08222           2 YILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCIIT   81 (260)
T ss_pred             ceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEEE
Confidence            6667899999999999997533 4445566554321     223346888999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhc
Q 011696          443 DYVPNNTLYFHLHG  456 (479)
Q Consensus       443 Ey~~~GsL~~~L~~  456 (479)
                      ||+.+++|.++++.
T Consensus        82 e~~~~~~l~~~~~~   95 (260)
T cd08222          82 EYCEGRDLDCKLEE   95 (260)
T ss_pred             EeCCCCCHHHHHHH
Confidence            99999999988864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.28  E-value=7.6e-12  Score=127.00  Aligned_cols=111  Identities=16%  Similarity=0.221  Sum_probs=80.6

Q ss_pred             HhcCccccccccccCccceEEEEe-CCCCEEEEEEeecCC--CcchHhHHHHHHHHHhCCCCCccceEEEEEeC------
Q 011696          365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISD------  435 (479)
Q Consensus       365 ~~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~------  435 (479)
                      ..++|...+.||+|+||+||+|.. .+++.||||+++...  ....++|.+|+++|++++|+||++++++|...      
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07878          13 VPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIENF   92 (343)
T ss_pred             hhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccccccc
Confidence            346788889999999999999985 467899999986432  22345688999999999999999999988643      


Q ss_pred             CeEEEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhc
Q 011696          436 DRRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       436 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~  477 (479)
                      ...|+|+||+ +++|.++++.+ .+.++....+..-++.++.
T Consensus        93 ~~~~~~~~~~-~~~l~~~~~~~-~l~~~~~~~i~~qi~~aL~  132 (343)
T cd07878          93 NEVYLVTNLM-GADLNNIVKCQ-KLSDEHVQFLIYQLLRGLK  132 (343)
T ss_pred             CcEEEEeecC-CCCHHHHHhcC-CCCHHHHHHHHHHHHHHHH
Confidence            3468999988 78888776532 2333333333333333333

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.28  E-value=1.9e-13  Score=127.85  Aligned_cols=88  Identities=22%  Similarity=0.385  Sum_probs=74.2

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecC--CCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIG--GGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~--~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      ++|...++||+|.|..||++.. ..|+.+|+|.++..  ...+.+++.+|++|-..|+|+|||+|+.-..++...|||||
T Consensus        11 d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylvFe   90 (355)
T KOG0033|consen   11 DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFD   90 (355)
T ss_pred             hhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEEEe
Confidence            4456668899999999999874 56888999887533  34456789999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHH
Q 011696          444 YVPNNTLYFHL  454 (479)
Q Consensus       444 y~~~GsL~~~L  454 (479)
                      +|.||+|.+-+
T Consensus        91 ~m~G~dl~~eI  101 (355)
T KOG0033|consen   91 LVTGGELFEDI  101 (355)
T ss_pred             cccchHHHHHH
Confidence            99999996433

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.28  E-value=2.7e-11  Score=118.61  Aligned_cols=112  Identities=19%  Similarity=0.148  Sum_probs=78.6

Q ss_pred             HHHHHHhcCccccccc--cccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhC-CCCCccceEEEEEeC
Q 011696          360 EELVKATDGFADQNLL--GEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCISD  435 (479)
Q Consensus       360 eel~~~~~~f~~~~~I--G~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~  435 (479)
                      .++....++|...+.|  |+|+||.||++.. .+++.+|+|.++.......     |+.++..+ +|+||++++++|..+
T Consensus         7 ~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~-----e~~~~~~~~~h~~iv~~~~~~~~~   81 (267)
T PHA03390          7 SELVQFLKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNAI-----EPMVHQLMKDNPNFIKLYYSVTTL   81 (267)
T ss_pred             HHHHHHHHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcchh-----hHHHHHHhhcCCCEEEEEEEEecC
Confidence            4455555666666665  9999999999985 4678899999864322211     22222222 799999999999999


Q ss_pred             CeEEEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhh
Q 011696          436 DRRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       436 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~  476 (479)
                      +..++||||+.+|+|.++++.+..+.++....+..-++.++
T Consensus        82 ~~~~iv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l  122 (267)
T PHA03390         82 KGHVLIMDYIKDGDLFDLLKKEGKLSEAEVKKIIRQLVEAL  122 (267)
T ss_pred             CeeEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999998765444444444433333333

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.27  E-value=8e-12  Score=122.34  Aligned_cols=105  Identities=21%  Similarity=0.340  Sum_probs=81.5

Q ss_pred             ccccccccccCccceEEEEeC-CCCEEEEEEeecCC--CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          369 FADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      |...++||+|.||.||+|+.. +++.|++|.++...  ....++|.+|++++++++|+||++++|++.+.+..++||||+
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~   80 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEYC   80 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecCc
Confidence            344578999999999999864 58899999997543  233457899999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcC-CcccchhHHHHHHHHHH
Q 011696          446 PNNTLYFHLHGK-WQLGFDIRNHNNGLLIL  474 (479)
Q Consensus       446 ~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~  474 (479)
                      . ++|.++++.. ..+.+....++..-++.
T Consensus        81 ~-~~l~~~i~~~~~~~~~~~~~~~~~~i~~  109 (282)
T cd07829          81 D-MDLKKYLDKRPGPLSPNLIKSIMYQLLR  109 (282)
T ss_pred             C-cCHHHHHHhhccCCCHHHHHHHHHHHHH
Confidence            8 5899999865 23334433333333333

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.27  E-value=5.7e-12  Score=137.74  Aligned_cols=95  Identities=27%  Similarity=0.465  Sum_probs=80.0

Q ss_pred             HHhcCccccccccccCccceEEEEeCC--------CCEEEEEEeecCCCc-chHhHHHHHHHHHhC-CCCCccceEEEEE
Q 011696          364 KATDGFADQNLLGEGGFGSVYKGYLPD--------GREVAIKQLKIGGGQ-GEREFKAEVEIISRI-HHRHLVSLVGYCI  433 (479)
Q Consensus       364 ~~~~~f~~~~~IG~G~fG~Vykg~~~~--------g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l-~HpNIv~LlG~~~  433 (479)
                      ...+++...+.||+|.||.||+|.+..        ...||||+++..... +.++|..|+++|+.+ +|.|||.|+|+|.
T Consensus       293 ~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~~t  372 (609)
T KOG0200|consen  293 IPRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGACT  372 (609)
T ss_pred             echhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheeeec
Confidence            334455556799999999999998521        346999999865544 456799999999999 7999999999999


Q ss_pred             eCCeEEEEEecCCCCCHHHHHhcCC
Q 011696          434 SDDRRLLIYDYVPNNTLYFHLHGKW  458 (479)
Q Consensus       434 ~~~~~~LV~Ey~~~GsL~~~L~~~~  458 (479)
                      ..+..++|+||+.+|+|.+||+.++
T Consensus       373 ~~~~~~~v~Ey~~~G~L~~~Lr~~r  397 (609)
T KOG0200|consen  373 QDGPLYVIVEYAEHGDLLEFLRKKR  397 (609)
T ss_pred             cCCceEEEEEeccCCcHHHHHHhcc
Confidence            9999999999999999999999776

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.27  E-value=2.6e-11  Score=121.60  Aligned_cols=87  Identities=21%  Similarity=0.384  Sum_probs=72.4

Q ss_pred             ccccccccccCccceEEEEe-CCCCEEEEEEeecCCC---cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      |...+.||+|+||+||+|.. .+|+.|+||++.....   ...++|.+|+++|++++|+||++++|+|.+.+..+|||||
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  102 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEY  102 (313)
T ss_pred             hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEec
Confidence            44457799999999999985 4688999999864332   2235689999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhc
Q 011696          445 VPNNTLYFHLHG  456 (479)
Q Consensus       445 ~~~GsL~~~L~~  456 (479)
                      +. |+|.+++..
T Consensus       103 ~~-~~l~~~l~~  113 (313)
T cd06633         103 CL-GSASDLLEV  113 (313)
T ss_pred             CC-CCHHHHHHh
Confidence            95 678777754

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.27  E-value=1.9e-11  Score=120.40  Aligned_cols=108  Identities=20%  Similarity=0.310  Sum_probs=76.7

Q ss_pred             ccccccccccCccceEEEEe-CCCCEEEEEEeecCCCc--chHhHHHHHHHHHhC---CCCCccceEEEEEeC-----Ce
Q 011696          369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ--GEREFKAEVEIISRI---HHRHLVSLVGYCISD-----DR  437 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l---~HpNIv~LlG~~~~~-----~~  437 (479)
                      |...+.||+|+||+||+|+. .+|+.||||.++.....  ...++.+|+++++++   +|+||++++++|...     ..
T Consensus         2 y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~~   81 (288)
T cd07863           2 YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRETK   81 (288)
T ss_pred             ceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCce
Confidence            56678899999999999985 46889999998754322  234577788777765   799999999998753     34


Q ss_pred             EEEEEecCCCCCHHHHHhcCCc--ccchhHHHHHHHHHHhhc
Q 011696          438 RLLIYDYVPNNTLYFHLHGKWQ--LGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       438 ~~LV~Ey~~~GsL~~~L~~~~~--~~~~~~~~~~~l~~~~~~  477 (479)
                      .++||||+. |+|.++++....  +.++...++..-++.++.
T Consensus        82 ~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~  122 (288)
T cd07863          82 VTLVFEHVD-QDLRTYLDKVPPPGLPAETIKDLMRQFLRGLD  122 (288)
T ss_pred             EEEEEcccc-cCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence            789999998 489888875432  334444444443444433

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.27  E-value=1.8e-13  Score=142.04  Aligned_cols=80  Identities=20%  Similarity=0.373  Sum_probs=70.0

Q ss_pred             ccccccCccceEEEEeCC-CCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCCCHH
Q 011696          373 NLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLY  451 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~~-g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~GsL~  451 (479)
                      ..||.|+||.|||+...+ +...|.|.|...+..+.++|+-||+||+.|+|+|||+|++.|+.++.++|++|||.||-+.
T Consensus        38 GELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliEFC~GGAVD  117 (1187)
T KOG0579|consen   38 GELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIEFCGGGAVD  117 (1187)
T ss_pred             hhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEeecCCchHh
Confidence            458999999999998644 4456788887777777889999999999999999999999999999999999999999874


Q ss_pred             H
Q 011696          452 F  452 (479)
Q Consensus       452 ~  452 (479)
                      .
T Consensus       118 a  118 (1187)
T KOG0579|consen  118 A  118 (1187)
T ss_pred             H
Confidence            3

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.27  E-value=2.5e-11  Score=119.51  Aligned_cols=105  Identities=24%  Similarity=0.255  Sum_probs=76.5

Q ss_pred             cccccCccceEEEEe-CCCCEEEEEEeecCCC---cchHhHHHHHH---HHHhCCCCCccceEEEEEeCCeEEEEEecCC
Q 011696          374 LLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---QGEREFKAEVE---IISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (479)
Q Consensus       374 ~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~---~~~~~f~~Ei~---il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~  446 (479)
                      +||+|+||.||++.. .+|+.||||++.....   .....+.+|..   +++..+|+||+++++++.+.+..++||||+.
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMN   80 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCC
Confidence            489999999999985 4588999999864322   12223455543   4455689999999999999999999999999


Q ss_pred             CCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          447 NNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       447 ~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      +|+|.+++..+..+.+.....+..-++.++.|
T Consensus        81 g~~L~~~l~~~~~l~~~~~~~~~~ql~~~l~~  112 (278)
T cd05606          81 GGDLHYHLSQHGVFSEAEMRFYAAEIILGLEH  112 (278)
T ss_pred             CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            99999988766555555544444444444433

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.26  E-value=2e-11  Score=122.13  Aligned_cols=87  Identities=23%  Similarity=0.416  Sum_probs=72.7

Q ss_pred             ccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      |...+.||+|+||.||+|.. .+++.|+||.+....   ....++|.+|+++|++++|+||++++|+|.+.+..+|||||
T Consensus        17 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   96 (308)
T cd06634          17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEY   96 (308)
T ss_pred             HHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEEEc
Confidence            55567899999999999985 467889999986432   23345789999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhc
Q 011696          445 VPNNTLYFHLHG  456 (479)
Q Consensus       445 ~~~GsL~~~L~~  456 (479)
                      +. |+|.++++.
T Consensus        97 ~~-~~l~~~~~~  107 (308)
T cd06634          97 CL-GSASDLLEV  107 (308)
T ss_pred             cC-CCHHHHHHH
Confidence            96 688877754

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.26  E-value=1.4e-11  Score=125.67  Aligned_cols=90  Identities=19%  Similarity=0.293  Sum_probs=71.9

Q ss_pred             HhcCccccccccccCccceEEEEe-CCCCEEEEEEeecCC--CcchHhHHHHHHHHHhCCCCCccceEEEEEeCC-----
Q 011696          365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDD-----  436 (479)
Q Consensus       365 ~~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~-----  436 (479)
                      ..++|...+.||+|+||.||++.. ..++.||||+++...  ....+++.+|+.+|+.++|+||++++++|...+     
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~   94 (355)
T cd07874          15 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEEF   94 (355)
T ss_pred             hhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeecccccccc
Confidence            346788889999999999999985 457899999997432  233457889999999999999999999986443     


Q ss_pred             -eEEEEEecCCCCCHHHHHh
Q 011696          437 -RRLLIYDYVPNNTLYFHLH  455 (479)
Q Consensus       437 -~~~LV~Ey~~~GsL~~~L~  455 (479)
                       ..+||||||.+ +|.++++
T Consensus        95 ~~~~lv~e~~~~-~l~~~~~  113 (355)
T cd07874          95 QDVYLVMELMDA-NLCQVIQ  113 (355)
T ss_pred             ceeEEEhhhhcc-cHHHHHh
Confidence             46899999975 5655543

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.26  E-value=1.4e-11  Score=125.34  Aligned_cols=108  Identities=19%  Similarity=0.240  Sum_probs=82.1

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeC----------
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISD----------  435 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~----------  435 (479)
                      .+|...+.||+|+||+||+|+. .+|+.||||++........+.+.+|+++|++++|+||+++++++...          
T Consensus         5 ~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~   84 (342)
T cd07854           5 SRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVGS   84 (342)
T ss_pred             cceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhHhhhccccccccccccc
Confidence            5677889999999999999985 46889999999766666667899999999999999999999876543          


Q ss_pred             ----CeEEEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhh
Q 011696          436 ----DRRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       436 ----~~~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~  476 (479)
                          +..++||||+. ++|.+++.+. .+.++....+..-++.++
T Consensus        85 ~~~~~~~~lv~e~~~-~~L~~~~~~~-~l~~~~~~~~~~qi~~aL  127 (342)
T cd07854          85 LTELNSVYIVQEYME-TDLANVLEQG-PLSEEHARLFMYQLLRGL  127 (342)
T ss_pred             ccccceEEEEeeccc-ccHHHHHHcC-CCCHHHHHHHHHHHHHHH
Confidence                35789999997 5898877543 233444444433333333

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.26  E-value=6.8e-13  Score=137.00  Aligned_cols=79  Identities=25%  Similarity=0.479  Sum_probs=68.5

Q ss_pred             ccccccccccCccceEEEEe-CCCCEEEEEEeecCCCc---chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ---GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~---~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      |.+.+.||.|.||.||-++. .+.+.||||++...+.+   ...++++||+.|.+|+|+|+|...|||+.+...+|||||
T Consensus        28 f~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVMEY  107 (948)
T KOG0577|consen   28 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVMEY  107 (948)
T ss_pred             HHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHHHH
Confidence            66678899999999999984 56778999999755433   345799999999999999999999999999999999999


Q ss_pred             CCC
Q 011696          445 VPN  447 (479)
Q Consensus       445 ~~~  447 (479)
                      |-|
T Consensus       108 ClG  110 (948)
T KOG0577|consen  108 CLG  110 (948)
T ss_pred             Hhc
Confidence            965

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.26  E-value=1.5e-11  Score=122.83  Aligned_cols=85  Identities=12%  Similarity=0.139  Sum_probs=70.7

Q ss_pred             ccccccCccceEEEEeCCCCEEEEEEeecC--CCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCCCH
Q 011696          373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIG--GGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL  450 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~--~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~GsL  450 (479)
                      +.+|.|+|+.||++.. +|+.||||+++..  .....+.|.+|+++|++++|+||+++++++.+++..++||||+.+|+|
T Consensus         8 ~~~~~~~~v~~~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~l   86 (314)
T cd08216           8 KCFEDLMIVHLAKHKP-TNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYGSC   86 (314)
T ss_pred             HhhcCCceEEEEEecC-CCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCCCH
Confidence            4456666666666665 7899999999754  234456799999999999999999999999999999999999999999


Q ss_pred             HHHHhcCC
Q 011696          451 YFHLHGKW  458 (479)
Q Consensus       451 ~~~L~~~~  458 (479)
                      .++++...
T Consensus        87 ~~~l~~~~   94 (314)
T cd08216          87 EDLLKTHF   94 (314)
T ss_pred             HHHHHHhc
Confidence            99998643

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.25  E-value=2.8e-11  Score=121.17  Aligned_cols=81  Identities=27%  Similarity=0.491  Sum_probs=65.2

Q ss_pred             cccccccCccceEEEEeC---CCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEe--CCeEEEEEecCC
Q 011696          372 QNLLGEGGFGSVYKGYLP---DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS--DDRRLLIYDYVP  446 (479)
Q Consensus       372 ~~~IG~G~fG~Vykg~~~---~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~--~~~~~LV~Ey~~  446 (479)
                      .++||+|+||+||+|+..   +++.||||+++...  ...++.+|+++|++++|+||+++++++.+  +...+|||||+.
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~   83 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE   83 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCC--CcHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEeccC
Confidence            468999999999999854   45789999986432  23468899999999999999999999865  345789999986


Q ss_pred             CCCHHHHHh
Q 011696          447 NNTLYFHLH  455 (479)
Q Consensus       447 ~GsL~~~L~  455 (479)
                      + +|++++.
T Consensus        84 ~-~l~~~~~   91 (317)
T cd07868          84 H-DLWHIIK   91 (317)
T ss_pred             C-CHHHHHH
Confidence            5 6766654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.25  E-value=2.5e-12  Score=124.64  Aligned_cols=113  Identities=23%  Similarity=0.274  Sum_probs=88.0

Q ss_pred             hcCccccccccccCccceEEEE-eCCCCEEEEEEeecCCCcchH---hHHHHHHHHHhCCCCCccceEEEEEeCCeEEEE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGER---EFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~-~~~g~~VAVK~l~~~~~~~~~---~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      .++|...++||+|.||+|.+++ ...|+.+|||+|+.......+   .-+.|-++|.+++|+.+..|...|...+.+|+|
T Consensus       167 m~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drlCFV  246 (516)
T KOG0690|consen  167 MEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRLCFV  246 (516)
T ss_pred             cchhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCceEEEE
Confidence            4678888999999999999986 456899999999865544433   457899999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          442 YDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||+.||.|+.+|.+.+.+..+...-+-.-.+.+|-|
T Consensus       247 MeyanGGeLf~HLsrer~FsE~RtRFYGaEIvsAL~Y  283 (516)
T KOG0690|consen  247 MEYANGGELFFHLSRERVFSEDRTRFYGAEIVSALGY  283 (516)
T ss_pred             EEEccCceEeeehhhhhcccchhhhhhhHHHHHHhhh
Confidence            9999999999888776655444333333333333333

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.25  E-value=2.5e-11  Score=124.40  Aligned_cols=89  Identities=17%  Similarity=0.279  Sum_probs=71.7

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCC--CcchHhHHHHHHHHHhCCCCCccceEEEEEeCC------
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDD------  436 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~------  436 (479)
                      .++|...++||+|+||.||++.. ..++.||||+++...  ....+++.+|+.+|+.++|+||++++++|...+      
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~~  102 (364)
T cd07875          23 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ  102 (364)
T ss_pred             hcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeecccccccccC
Confidence            46788889999999999999985 457889999996432  233457899999999999999999999886433      


Q ss_pred             eEEEEEecCCCCCHHHHHh
Q 011696          437 RRLLIYDYVPNNTLYFHLH  455 (479)
Q Consensus       437 ~~~LV~Ey~~~GsL~~~L~  455 (479)
                      ..||||||+.+ +|.+++.
T Consensus       103 ~~~lv~e~~~~-~l~~~~~  120 (364)
T cd07875         103 DVYIVMELMDA-NLCQVIQ  120 (364)
T ss_pred             eEEEEEeCCCC-CHHHHHH
Confidence            46899999975 5666554

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.25  E-value=2.9e-11  Score=123.38  Aligned_cols=92  Identities=17%  Similarity=0.308  Sum_probs=74.2

Q ss_pred             HhcCccccccccccCccceEEEEe-CCCCEEEEEEeecC--CCcchHhHHHHHHHHHhCCCCCccceEEEEEeCC-----
Q 011696          365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIG--GGQGEREFKAEVEIISRIHHRHLVSLVGYCISDD-----  436 (479)
Q Consensus       365 ~~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~--~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~-----  436 (479)
                      ..++|...+.||+|+||.||+|.. .+|+.||||+++..  .....+++.+|+++|++++|+||++++++|...+     
T Consensus        14 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   93 (353)
T cd07850          14 VLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEF   93 (353)
T ss_pred             hhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCcccc
Confidence            346788889999999999999985 46889999998642  2233457889999999999999999999986443     


Q ss_pred             -eEEEEEecCCCCCHHHHHhcC
Q 011696          437 -RRLLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       437 -~~~LV~Ey~~~GsL~~~L~~~  457 (479)
                       ..+||||||. |+|.++++..
T Consensus        94 ~~~~lv~e~~~-~~l~~~~~~~  114 (353)
T cd07850          94 QDVYLVMELMD-ANLCQVIQMD  114 (353)
T ss_pred             CcEEEEEeccC-CCHHHHHhhc
Confidence             4689999996 5788777644

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.25  E-value=2e-11  Score=123.59  Aligned_cols=90  Identities=19%  Similarity=0.350  Sum_probs=73.3

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCC-CcchHhHHHHHHHHHhCCCCCccceEEEEEeCC-----eE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDD-----RR  438 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~-----~~  438 (479)
                      .++|...++||+|+||.||+|+. .+|+.||||+++... ....+++.+|+.+|++++|+||+++++++...+     ..
T Consensus         4 ~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~   83 (336)
T cd07849           4 GPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFNDV   83 (336)
T ss_pred             ccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccceE
Confidence            35788889999999999999985 568899999986432 233457899999999999999999999886543     47


Q ss_pred             EEEEecCCCCCHHHHHhc
Q 011696          439 LLIYDYVPNNTLYFHLHG  456 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~  456 (479)
                      +||+|||.+ +|.++++.
T Consensus        84 ~lv~e~~~~-~l~~~~~~  100 (336)
T cd07849          84 YIVQELMET-DLYKLIKT  100 (336)
T ss_pred             EEEehhccc-CHHHHHhc
Confidence            899999975 78777654

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.24  E-value=2.1e-11  Score=131.38  Aligned_cols=99  Identities=23%  Similarity=0.432  Sum_probs=81.0

Q ss_pred             ccHHHHHHHhcCccccccccccCccceEEEE-eCCCCEEEEEEeecCCCcchHhHHHHHHHHHhC-CCCCccceEEEEEe
Q 011696          357 FTYEELVKATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCIS  434 (479)
Q Consensus       357 ~~~eel~~~~~~f~~~~~IG~G~fG~Vykg~-~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~  434 (479)
                      +.++.+-..++.|.+.++||+|.+|.|||++ .++|+.+|||++... .+..+|...|.++|+.+ +|+|++.++|++..
T Consensus         9 ~~~~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~-~d~deEiE~eynil~~~~~hpnv~~fyg~~~k   87 (953)
T KOG0587|consen    9 IDLSSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPT-EDEEEEIELEYNMLKKYSHHPNVATFYGAFIK   87 (953)
T ss_pred             cchhhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCC-ccccHHHHHHHHHHHhccCCCCcceEEEEEEE
Confidence            3455555566778888999999999999997 578999999988643 33445778888888887 89999999999873


Q ss_pred             -----CCeEEEEEecCCCCCHHHHHhc
Q 011696          435 -----DDRRLLIYDYVPNNTLYFHLHG  456 (479)
Q Consensus       435 -----~~~~~LV~Ey~~~GsL~~~L~~  456 (479)
                           +|+++||||||.+|+..|++.+
T Consensus        88 ~~~~~~DqLWLVMEfC~gGSVTDLVKn  114 (953)
T KOG0587|consen   88 KDPGNGDQLWLVMEFCGGGSVTDLVKN  114 (953)
T ss_pred             ecCCCCCeEEEEeeccCCccHHHHHhh
Confidence                 5789999999999999888765

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.24  E-value=4e-11  Score=119.90  Aligned_cols=81  Identities=26%  Similarity=0.479  Sum_probs=65.3

Q ss_pred             cccccccCccceEEEEeC---CCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEe--CCeEEEEEecCC
Q 011696          372 QNLLGEGGFGSVYKGYLP---DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS--DDRRLLIYDYVP  446 (479)
Q Consensus       372 ~~~IG~G~fG~Vykg~~~---~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~--~~~~~LV~Ey~~  446 (479)
                      +++||+|+||+||+|+..   +++.||||.++...  ...++.+|+++|++++|+||++++++|..  +...+|||||+.
T Consensus         6 g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~   83 (317)
T cd07867           6 GCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTG--ISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAE   83 (317)
T ss_pred             ceEeccCCCeeEEEEEecCCCccceEEEEEecCCC--CcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeeeC
Confidence            467999999999999864   34689999886432  23468899999999999999999999864  456789999988


Q ss_pred             CCCHHHHHh
Q 011696          447 NNTLYFHLH  455 (479)
Q Consensus       447 ~GsL~~~L~  455 (479)
                      + +|++++.
T Consensus        84 ~-~l~~~~~   91 (317)
T cd07867          84 H-DLWHIIK   91 (317)
T ss_pred             C-cHHHHHH
Confidence            5 6766654

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.24  E-value=3.1e-11  Score=122.68  Aligned_cols=87  Identities=21%  Similarity=0.321  Sum_probs=70.9

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCC--CcchHhHHHHHHHHHhCCCCCccceEEEEEeCC------e
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDD------R  437 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~------~  437 (479)
                      ++|...++||+|+||.||+|+. .+|+.||||+++...  ....+.|.+|+++|++++|+||++++++|...+      .
T Consensus        15 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~   94 (342)
T cd07879          15 ERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQD   94 (342)
T ss_pred             cceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccCCCCce
Confidence            6788889999999999999985 468999999986432  222356899999999999999999999987543      4


Q ss_pred             EEEEEecCCCCCHHHHH
Q 011696          438 RLLIYDYVPNNTLYFHL  454 (479)
Q Consensus       438 ~~LV~Ey~~~GsL~~~L  454 (479)
                      .++|+||+.+ +|..++
T Consensus        95 ~~lv~e~~~~-~l~~~~  110 (342)
T cd07879          95 FYLVMPYMQT-DLQKIM  110 (342)
T ss_pred             EEEEeccccc-CHHHHH
Confidence            5899999974 776654

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.23  E-value=9.5e-12  Score=130.63  Aligned_cols=86  Identities=23%  Similarity=0.444  Sum_probs=76.9

Q ss_pred             cccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCCCHHH
Q 011696          374 LLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYF  452 (479)
Q Consensus       374 ~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~GsL~~  452 (479)
                      +||+|.||+||-|+. ++...+|||.+-..+..+..-+.+||.+.++|+|.|||+.+|.|.+++.+.|.||-++||+|.+
T Consensus       582 VLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGGSLSs  661 (1226)
T KOG4279|consen  582 VLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGGSLSS  661 (1226)
T ss_pred             EeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCCcHHH
Confidence            599999999999985 4456799999976666666678999999999999999999999999998889999999999999


Q ss_pred             HHhcCCc
Q 011696          453 HLHGKWQ  459 (479)
Q Consensus       453 ~L~~~~~  459 (479)
                      +|+.+|-
T Consensus       662 LLrskWG  668 (1226)
T KOG4279|consen  662 LLRSKWG  668 (1226)
T ss_pred             HHHhccC
Confidence            9999884

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.23  E-value=4.3e-11  Score=117.45  Aligned_cols=88  Identities=24%  Similarity=0.411  Sum_probs=70.9

Q ss_pred             ccccccccccCccceEEEEeC-CCCEEEEEEeecCCCc--chHhHHHHHHHHHhC---CCCCccceEEEEEeCCe-----
Q 011696          369 FADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ--GEREFKAEVEIISRI---HHRHLVSLVGYCISDDR-----  437 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l---~HpNIv~LlG~~~~~~~-----  437 (479)
                      |...++||+|.||.||+|+.. +++.||||+++.....  ..+++.+|++++.++   +|+||++++|+|...+.     
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~   80 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELK   80 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCce
Confidence            455688999999999999975 4889999999743322  234677888877766   69999999999998877     


Q ss_pred             EEEEEecCCCCCHHHHHhcC
Q 011696          438 RLLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       438 ~~LV~Ey~~~GsL~~~L~~~  457 (479)
                      .+|||||+. ++|.++++..
T Consensus        81 ~~l~~e~~~-~~l~~~l~~~   99 (287)
T cd07838          81 LTLVFEHVD-QDLATYLSKC   99 (287)
T ss_pred             eEEEehhcc-cCHHHHHHHc
Confidence            899999997 4898888754

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.23  E-value=2.8e-11  Score=119.33  Aligned_cols=79  Identities=18%  Similarity=0.360  Sum_probs=66.6

Q ss_pred             ccccccccccCccceEEEEe-CCCCEEEEEEeecCCC-cchHhHHHHHHHHHhCC-CCCccceEEEEEeCCeEEEEEecC
Q 011696          369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG-QGEREFKAEVEIISRIH-HRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~-HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      |...++||+|+||+||++.. .+|+.||||+++.... ....+|++|+.+|.++. |+||++++|++..++..++||||+
T Consensus         6 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~e~~   85 (288)
T cd06616           6 LKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICMELM   85 (288)
T ss_pred             hHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEEecc
Confidence            44457899999999999985 4588999999875433 34457999999999996 999999999999999999999998


Q ss_pred             CC
Q 011696          446 PN  447 (479)
Q Consensus       446 ~~  447 (479)
                      ..
T Consensus        86 ~~   87 (288)
T cd06616          86 DI   87 (288)
T ss_pred             cC
Confidence            75

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.23  E-value=7.3e-12  Score=130.81  Aligned_cols=109  Identities=20%  Similarity=0.305  Sum_probs=89.8

Q ss_pred             ccccccccCccceEEEEe-CCCCEEEEEEeecC----CCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCe--EEEEEe
Q 011696          371 DQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIG----GGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDR--RLLIYD  443 (479)
Q Consensus       371 ~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~----~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~--~~LV~E  443 (479)
                      +..+||+|.|-+||||.. .+|..||.-.++..    +....+.|..|+++|+.|+|+|||+|+..+.+.+.  .-+|.|
T Consensus        44 ~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iTE  123 (632)
T KOG0584|consen   44 FDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFITE  123 (632)
T ss_pred             hhhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeeee
Confidence            357899999999999985 35778886555422    22334679999999999999999999999988776  568999


Q ss_pred             cCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          444 YVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       444 y~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      +|..|+|+.|+.+-+++.....+.|-...++.|.||
T Consensus       124 L~TSGtLr~Y~kk~~~vn~kaik~W~RQILkGL~yL  159 (632)
T KOG0584|consen  124 LFTSGTLREYRKKHRRVNIKAIKSWCRQILKGLVYL  159 (632)
T ss_pred             cccCCcHHHHHHHhccCCHHHHHHHHHHHHHHhhhh
Confidence            999999999998877777788888888888888887

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.22  E-value=3.2e-11  Score=118.06  Aligned_cols=107  Identities=20%  Similarity=0.321  Sum_probs=82.0

Q ss_pred             cccccccccCccceEEEEe-CCCCEEEEEEeecCCCc--chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCC
Q 011696          370 ADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (479)
Q Consensus       370 ~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~  446 (479)
                      ...+.||+|+||.||+|.. .+|+.|+||+++.....  ..+++.+|+++|++++|.||++++++|..++..++||||+.
T Consensus         2 ~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~   81 (283)
T cd05118           2 QKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFMD   81 (283)
T ss_pred             ccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEeccC
Confidence            3457899999999999986 46888999998754332  34679999999999999999999999999999999999998


Q ss_pred             CCCHHHHHhcC-CcccchhHHHHHHHHHHhhc
Q 011696          447 NNTLYFHLHGK-WQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       447 ~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~~  477 (479)
                      + +|.+++..+ ..+.++....+..-++.++.
T Consensus        82 ~-~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~  112 (283)
T cd05118          82 T-DLYKLIKDRQRGLPESLIKSYLYQLLQGLA  112 (283)
T ss_pred             C-CHHHHHHhhcccCCHHHHHHHHHHHHHHHH
Confidence            5 888887764 33444444444444444433

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.21  E-value=5e-11  Score=118.28  Aligned_cols=88  Identities=22%  Similarity=0.430  Sum_probs=71.6

Q ss_pred             cCccccccccccCccceEEEEeCC-CCEEEEEEeecCCC-cchHhHHHHHHHHHhCC-CCCccceEEEEEeCCeEEEEEe
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGG-QGEREFKAEVEIISRIH-HRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~-g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~-HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      ++|...++||+|+||+||+|...+ |+.||||+++.... ....++.+|++++.+++ |+||++++|+|.++...|+|||
T Consensus        15 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e   94 (296)
T cd06618          15 NDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVFICME   94 (296)
T ss_pred             chheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEEEEee
Confidence            456677899999999999999754 88999999975433 33456888888888775 9999999999999999999999


Q ss_pred             cCCCCCHHHHHh
Q 011696          444 YVPNNTLYFHLH  455 (479)
Q Consensus       444 y~~~GsL~~~L~  455 (479)
                      |+.+ +|.+++.
T Consensus        95 ~~~~-~l~~l~~  105 (296)
T cd06618          95 LMST-CLDKLLK  105 (296)
T ss_pred             ccCc-CHHHHHH
Confidence            9864 6655543

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.21  E-value=2.4e-11  Score=119.71  Aligned_cols=94  Identities=16%  Similarity=0.307  Sum_probs=76.1

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEee--cCCCcchHhHHHHHHHHHhCCCCCccceEEEEEe-----CCeE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLK--IGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS-----DDRR  438 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~--~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~-----~~~~  438 (479)
                      ..|...+.||+|.||.|++++. .+|+.||||++.  .....+.++-+||+++|++++|.||+.++.++..     .+..
T Consensus        22 ~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~Dv  101 (359)
T KOG0660|consen   22 RYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFNDV  101 (359)
T ss_pred             ceecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeeccccccccccee
Confidence            3444467899999999999985 568999999996  4555667789999999999999999999999865     4568


Q ss_pred             EEEEecCCCCCHHHHHhcCCccc
Q 011696          439 LLIYDYVPNNTLYFHLHGKWQLG  461 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~~~~~  461 (479)
                      |||+|+| .-||...|+.+..+.
T Consensus       102 YiV~elM-etDL~~iik~~~~L~  123 (359)
T KOG0660|consen  102 YLVFELM-ETDLHQIIKSQQDLT  123 (359)
T ss_pred             EEehhHH-hhHHHHHHHcCcccc
Confidence            9999999 557877777655443

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.20  E-value=3.3e-11  Score=119.80  Aligned_cols=110  Identities=22%  Similarity=0.293  Sum_probs=80.3

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCc--chHhHHHHHHHHHhCCCCCccceEEEEEeCC------
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHHRHLVSLVGYCISDD------  436 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~------  436 (479)
                      .++|...++||+|+||.||+|+. .+++.||||++......  ....+.+|+++|++++|+||+++++++.+..      
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   86 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRK   86 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheeccccccccc
Confidence            36788889999999999999985 46889999998654332  2346889999999999999999999886543      


Q ss_pred             --eEEEEEecCCCCCHHHHHhcC-CcccchhHHHHHHHHHHhh
Q 011696          437 --RRLLIYDYVPNNTLYFHLHGK-WQLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       437 --~~~LV~Ey~~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~  476 (479)
                        ..++||||+.+ +|..+++.. ..+.++....+..-++.++
T Consensus        87 ~~~~~lv~~~~~~-~l~~~~~~~~~~~~~~~~~~i~~~l~~al  128 (311)
T cd07866          87 RGSVYMVTPYMDH-DLSGLLENPSVKLTESQIKCYMLQLLEGI  128 (311)
T ss_pred             CceEEEEEecCCc-CHHHHHhccccCCCHHHHHHHHHHHHHHH
Confidence              35899999975 677666643 2344444444433333333

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.20  E-value=1.2e-10  Score=107.27  Aligned_cols=83  Identities=33%  Similarity=0.532  Sum_probs=73.4

Q ss_pred             ccccCccceEEEEeCC-CCEEEEEEeecCCCc-chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCCCHHH
Q 011696          375 LGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYF  452 (479)
Q Consensus       375 IG~G~fG~Vykg~~~~-g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~GsL~~  452 (479)
                      ||+|.||.||++...+ |+.++||++...... ..+.|.+|+++|++++|.||+++++++...+..++||||+.+++|.+
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~   80 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKD   80 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcHHH
Confidence            6899999999999754 889999999754432 34679999999999999999999999999999999999999999999


Q ss_pred             HHhcC
Q 011696          453 HLHGK  457 (479)
Q Consensus       453 ~L~~~  457 (479)
                      ++...
T Consensus        81 ~~~~~   85 (215)
T cd00180          81 LLKEN   85 (215)
T ss_pred             HHHhc
Confidence            98765

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.20  E-value=5.1e-12  Score=139.01  Aligned_cols=118  Identities=21%  Similarity=0.220  Sum_probs=95.7

Q ss_pred             HHHHHHHhcCccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEe
Q 011696          359 YEELVKATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCIS  434 (479)
Q Consensus       359 ~eel~~~~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~  434 (479)
                      ..++....++|...++||+|+||+|+..++ ..++.+|+|+|+.+.   ..+...|..|-+||..-+...||+|.-.|.+
T Consensus        67 v~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD  146 (1317)
T KOG0612|consen   67 VKELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQD  146 (1317)
T ss_pred             HHHHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcC
Confidence            345555678899999999999999999986 457789999997543   2233469999999999999999999999999


Q ss_pred             CCeEEEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhh
Q 011696          435 DDRRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       435 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~  476 (479)
                      ++++|||||||.||||..+|..-..+-.||..-+..-+..++
T Consensus       147 ~~~LYlVMdY~pGGDlltLlSk~~~~pE~~ArFY~aEiVlAl  188 (1317)
T KOG0612|consen  147 ERYLYLVMDYMPGGDLLTLLSKFDRLPEDWARFYTAEIVLAL  188 (1317)
T ss_pred             ccceEEEEecccCchHHHHHhhcCCChHHHHHHHHHHHHHHH
Confidence            999999999999999998887555677778776666555443

>PRK10345 hypothetical protein; Provisional

Probab=99.19  E-value=8.9e-11  Score=111.21  Aligned_cols=86  Identities=22%  Similarity=0.324  Sum_probs=68.2

Q ss_pred             ccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhC-----CCCCccceEEEEEeCC---eEE-
Q 011696          369 FADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRI-----HHRHLVSLVGYCISDD---RRL-  439 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-----~HpNIv~LlG~~~~~~---~~~-  439 (479)
                      +...++||+|+||.||+ ...++.. +||++........+++.+|+++|++|     +|+||++++|++.++.   ..+ 
T Consensus         4 L~~~~~LG~G~~~~Vy~-hp~~~~k-~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~~   81 (210)
T PRK10345          4 LSEQSPLGTGRHRKCYA-HPEDAQR-CIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVYD   81 (210)
T ss_pred             cCCcceecCCCceEEEE-CCCCcCe-EEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEEE
Confidence            44568899999999997 3334444 69988765555567899999999999     6799999999998874   334 


Q ss_pred             EEEec--CCCCCHHHHHhc
Q 011696          440 LIYDY--VPNNTLYFHLHG  456 (479)
Q Consensus       440 LV~Ey--~~~GsL~~~L~~  456 (479)
                      +|+||  +.+|+|.++|..
T Consensus        82 ~I~e~~G~~~~tL~~~l~~  100 (210)
T PRK10345         82 VIADFDGKPSITLTEFAEQ  100 (210)
T ss_pred             EEecCCCCcchhHHHHHHc
Confidence            78999  558999999964

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.19  E-value=1e-11  Score=116.76  Aligned_cols=91  Identities=22%  Similarity=0.325  Sum_probs=81.5

Q ss_pred             hcCccccccccccCccceEEEE-eCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCe-----EE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDR-----RL  439 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~-~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~-----~~  439 (479)
                      .++|...++||+|+|..||.++ +.+++.+|+|++.....+++++.++|++..++++|+||+++++++..++.     .|
T Consensus        20 ~~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~~y   99 (302)
T KOG2345|consen   20 NKRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHEAY   99 (302)
T ss_pred             CceEEEeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCceeEE
Confidence            3567888999999999999997 67899999999998877778889999999999999999999999876554     89


Q ss_pred             EEEecCCCCCHHHHHhc
Q 011696          440 LIYDYVPNNTLYFHLHG  456 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~  456 (479)
                      |++.|...|+|.+++..
T Consensus       100 ll~Pyy~~Gsl~d~i~~  116 (302)
T KOG2345|consen  100 LLLPYYKRGSLLDEIER  116 (302)
T ss_pred             EEeehhccccHHHHHHH
Confidence            99999999999998874

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.17  E-value=1.4e-10  Score=117.25  Aligned_cols=109  Identities=15%  Similarity=0.093  Sum_probs=78.6

Q ss_pred             CccccccccccCccceEEEEeC-C--CCEEEEEEeecCC--CcchHhHHHHHHHHHhC-CCCCccceEEEEEeC----Ce
Q 011696          368 GFADQNLLGEGGFGSVYKGYLP-D--GREVAIKQLKIGG--GQGEREFKAEVEIISRI-HHRHLVSLVGYCISD----DR  437 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~-~--g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~----~~  437 (479)
                      +|...++||+|+||.||++... +  ++.||||++....  ....+++.+|+++|+++ +|+||+++++++...    +.
T Consensus         1 ~y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~   80 (332)
T cd07857           1 RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNE   80 (332)
T ss_pred             CceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCc
Confidence            3666788999999999999863 3  6789999986432  22345789999999999 599999999987543    34


Q ss_pred             EEEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhc
Q 011696          438 RLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       438 ~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~  477 (479)
                      .++++||+. ++|.+++.....+.+.....+..-++.++.
T Consensus        81 ~~~~~e~~~-~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~  119 (332)
T cd07857          81 LYLYEELME-ADLHQIIRSGQPLTDAHFQSFIYQILCGLK  119 (332)
T ss_pred             EEEEEeccc-CCHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            678888886 689888876554444444444444444443

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.16  E-value=1.2e-10  Score=110.21  Aligned_cols=81  Identities=25%  Similarity=0.395  Sum_probs=71.3

Q ss_pred             CccceEEEEeC-CCCEEEEEEeecCCCcc-hHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCCCHHHHHhc
Q 011696          379 GFGSVYKGYLP-DGREVAIKQLKIGGGQG-EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHG  456 (479)
Q Consensus       379 ~fG~Vykg~~~-~g~~VAVK~l~~~~~~~-~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~GsL~~~L~~  456 (479)
                      +||.||+|+.. +|+.|++|++....... .++|.+|++++++++|.||++++|+|...+..++||||+.+|+|.+++..
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~   80 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLKK   80 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHHh
Confidence            58999999975 48899999997655444 67899999999999999999999999999999999999999999999876


Q ss_pred             CCc
Q 011696          457 KWQ  459 (479)
Q Consensus       457 ~~~  459 (479)
                      ...
T Consensus        81 ~~~   83 (244)
T smart00220       81 RGR   83 (244)
T ss_pred             ccC
Confidence            543

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.16  E-value=3.6e-11  Score=122.25  Aligned_cols=91  Identities=19%  Similarity=0.339  Sum_probs=74.8

Q ss_pred             HhcCccccccccccCccceEEEEeC-CCCEEEEEEeecCC--CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCe----
Q 011696          365 ATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDR----  437 (479)
Q Consensus       365 ~~~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~----  437 (479)
                      ..++|...+.||+|+||.||+|+.. +++.||||+++...  ....+++.+|+++|++++|+||+++++++...+.    
T Consensus        13 ~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07851          13 VPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLEDF   92 (343)
T ss_pred             ccCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhcccccccc
Confidence            3467888899999999999999864 57889999986432  2334568899999999999999999998876654    


Q ss_pred             --EEEEEecCCCCCHHHHHhc
Q 011696          438 --RLLIYDYVPNNTLYFHLHG  456 (479)
Q Consensus       438 --~~LV~Ey~~~GsL~~~L~~  456 (479)
                        .+||+||+ +++|.+++..
T Consensus        93 ~~~~lv~e~~-~~~L~~~~~~  112 (343)
T cd07851          93 QDVYLVTHLM-GADLNNIVKC  112 (343)
T ss_pred             ccEEEEEecC-CCCHHHHHhc
Confidence              78999999 6799888765

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.14  E-value=1.6e-10  Score=123.77  Aligned_cols=90  Identities=18%  Similarity=0.282  Sum_probs=66.7

Q ss_pred             hcCccccccccccCccceEEEEeCC--CCEEEEEE--------------e-e--cCCCcchHhHHHHHHHHHhCCCCCcc
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLPD--GREVAIKQ--------------L-K--IGGGQGEREFKAEVEIISRIHHRHLV  426 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~~--g~~VAVK~--------------l-~--~~~~~~~~~f~~Ei~il~~l~HpNIv  426 (479)
                      .++|...++||+|+||+||+|.+..  ++.+++|.              + +  .......++|.+|+++|++|+|+|||
T Consensus       147 ~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~HpnIv  226 (501)
T PHA03210        147 LAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENIL  226 (501)
T ss_pred             hhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCCcC
Confidence            4678889999999999999987532  22222221              1 0  01112234689999999999999999


Q ss_pred             ceEEEEEeCCeEEEEEecCCCCCHHHHHhc
Q 011696          427 SLVGYCISDDRRLLIYDYVPNNTLYFHLHG  456 (479)
Q Consensus       427 ~LlG~~~~~~~~~LV~Ey~~~GsL~~~L~~  456 (479)
                      +|+++|.+.+..|||+||+. ++|++++.+
T Consensus       227 ~l~~~~~~~~~~~lv~e~~~-~~l~~~l~~  255 (501)
T PHA03210        227 KIEEILRSEANTYMITQKYD-FDLYSFMYD  255 (501)
T ss_pred             cEeEEEEECCeeEEEEeccc-cCHHHHHhh
Confidence            99999999999999999985 567766653

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.14  E-value=8.3e-12  Score=139.03  Aligned_cols=109  Identities=21%  Similarity=0.334  Sum_probs=85.0

Q ss_pred             hcCccccccccccCccceEEEE-eCCCCEEEEEEeecCCCc--chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~-~~~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      +-++..+++||.|.||.||-|. +++|+..|||.++.+...  ..+.+.+|+.+|..|+|+|||+.+|+-...+..+|.|
T Consensus      1234 ~~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~IFM 1313 (1509)
T KOG4645|consen 1234 TFRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYIFM 1313 (1509)
T ss_pred             eeeeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHHHHHHHH
Confidence            3456678899999999999997 678999999998765543  2357899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHH
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLIL  474 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~  474 (479)
                      |||++|+|.+.+...+..-+.+...+...++.
T Consensus      1314 EyC~~GsLa~ll~~gri~dE~vt~vyt~qll~ 1345 (1509)
T KOG4645|consen 1314 EYCEGGSLASLLEHGRIEDEMVTRVYTKQLLE 1345 (1509)
T ss_pred             HHhccCcHHHHHHhcchhhhhHHHHHHHHHHH
Confidence            99999999776654433333333333333333

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.13  E-value=7.7e-11  Score=123.99  Aligned_cols=93  Identities=26%  Similarity=0.439  Sum_probs=76.2

Q ss_pred             CccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCC-C-----CCccceEEEEEeCCeEEE
Q 011696          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIH-H-----RHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~-H-----pNIv~LlG~~~~~~~~~L  440 (479)
                      +|...++||+|.||+|.||+. .+++.||||+++... ...++-+.||+||..|+ |     -|||++++||...+.+||
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k-~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~Hlci  265 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKK-RFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHLCI  265 (586)
T ss_pred             EEEEEEEecccccceeEEEEecCCCcEEEEEeeccCh-HHHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccccceee
Confidence            567789999999999999984 568999999997432 22345677999999987 4     689999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCCcccc
Q 011696          441 IYDYVPNNTLYFHLHGKWQLGF  462 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~~~~~~  462 (479)
                      |+|.+.. +|+++|..+.-.++
T Consensus       266 VfELL~~-NLYellK~n~f~Gl  286 (586)
T KOG0667|consen  266 VFELLST-NLYELLKNNKFRGL  286 (586)
T ss_pred             eehhhhh-hHHHHHHhcCCCCC
Confidence            9998876 79999987654343

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.13  E-value=2.7e-11  Score=117.06  Aligned_cols=87  Identities=25%  Similarity=0.458  Sum_probs=68.1

Q ss_pred             cCccccccccccCccceEEEEeCC-----CCEEEEEEeecCCCcc--hHhHHHHHHHHHhCCCCCccceEEEEEe-CCeE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPD-----GREVAIKQLKIGGGQG--EREFKAEVEIISRIHHRHLVSLVGYCIS-DDRR  438 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~-----g~~VAVK~l~~~~~~~--~~~f~~Ei~il~~l~HpNIv~LlG~~~~-~~~~  438 (479)
                      ..|.....||+|.||.|||++..+     .+.+|||+++......  ...-.|||.++++|+|+||+.|+-++++ +..+
T Consensus        24 ~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~~v  103 (438)
T KOG0666|consen   24 FEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHDKKV  103 (438)
T ss_pred             HHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccCceE
Confidence            346666789999999999996432     2368999997553322  2357899999999999999999999998 6678


Q ss_pred             EEEEecCCCCCHHHHH
Q 011696          439 LLIYDYVPNNTLYFHL  454 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L  454 (479)
                      +|+|||.++ ||+.++
T Consensus       104 ~l~fdYAEh-DL~~II  118 (438)
T KOG0666|consen  104 WLLFDYAEH-DLWHII  118 (438)
T ss_pred             EEEehhhhh-hHHHHH
Confidence            899999998 454443

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.13  E-value=4.3e-11  Score=124.75  Aligned_cols=112  Identities=20%  Similarity=0.204  Sum_probs=94.2

Q ss_pred             cCccccccccccCccceEEEE-eCCCCEEEEEEeecCCCcc---hHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQG---EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~-~~~g~~VAVK~l~~~~~~~---~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      .-|...+.||-|+||+|.++. .+....+|.|.|+..+...   ......|-+||++.+...||+|+--|.+++.+|+||
T Consensus       629 SmFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDkdnLYFVM  708 (1034)
T KOG0608|consen  629 SMFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVM  708 (1034)
T ss_pred             cceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccCCceEEEE
Confidence            346777889999999999986 4445678999997655332   335788999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||+.||||..+|-+..+|..++..-+...+-|++.+
T Consensus       709 dYIPGGDmMSLLIrmgIFeE~LARFYIAEltcAies  744 (1034)
T KOG0608|consen  709 DYIPGGDMMSLLIRMGIFEEDLARFYIAELTCAIES  744 (1034)
T ss_pred             eccCCccHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence            999999999999988888888888777777777654

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.10  E-value=9.1e-11  Score=111.65  Aligned_cols=116  Identities=21%  Similarity=0.266  Sum_probs=93.0

Q ss_pred             HHhcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCc----ch----HhHHHHHHHHHhC-CCCCccceEEEEE
Q 011696          364 KATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ----GE----REFKAEVEIISRI-HHRHLVSLVGYCI  433 (479)
Q Consensus       364 ~~~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~----~~----~~f~~Ei~il~~l-~HpNIv~LlG~~~  433 (479)
                      ...++|...++||+|....|.++.. ..|+..|+|++......    ..    ++-++|+.||+++ .|+||++|.+++.
T Consensus        14 ~fy~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~ye   93 (411)
T KOG0599|consen   14 GFYAKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYE   93 (411)
T ss_pred             hHHhhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeecc
Confidence            3445677788999999999998875 56888999998643321    12    2457899999998 8999999999999


Q ss_pred             eCCeEEEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          434 SDDRRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       434 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      .+..+|||+|.|..|.|+|||..+..+..+...++...++..+.||
T Consensus        94 s~sF~FlVFdl~prGELFDyLts~VtlSEK~tR~iMrqlfegVeyl  139 (411)
T KOG0599|consen   94 SDAFVFLVFDLMPRGELFDYLTSKVTLSEKETRRIMRQLFEGVEYL  139 (411)
T ss_pred             CcchhhhhhhhcccchHHHHhhhheeecHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999887777776666666666666554

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.09  E-value=2.5e-10  Score=106.60  Aligned_cols=80  Identities=18%  Similarity=0.205  Sum_probs=58.5

Q ss_pred             cccccccCccceEEEEeCCCCEEEEEEeecCCCc--c-------hHhH-----------------HHHHHHHHhCCCCCc
Q 011696          372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ--G-------EREF-----------------KAEVEIISRIHHRHL  425 (479)
Q Consensus       372 ~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~--~-------~~~f-----------------~~Ei~il~~l~HpNI  425 (479)
                      .++||+|+||+||+|...+|+.||||+++.....  +       ...|                 .+|+++|.+|+|.+|
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v   81 (190)
T cd05147           2 NGCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGI   81 (190)
T ss_pred             CCccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            3679999999999999878999999999743211  1       1122                 349999999998887


Q ss_pred             cceEEEEEeCCeEEEEEecCCCCCHHHH
Q 011696          426 VSLVGYCISDDRRLLIYDYVPNNTLYFH  453 (479)
Q Consensus       426 v~LlG~~~~~~~~~LV~Ey~~~GsL~~~  453 (479)
                      .....+.  ....+|||||+.+++|...
T Consensus        82 ~~p~~~~--~~~~~iVmE~i~g~~l~~~  107 (190)
T cd05147          82 PCPEPIL--LKSHVLVMEFIGDDGWAAP  107 (190)
T ss_pred             CCCcEEE--ecCCEEEEEEeCCCCCcch
Confidence            5443332  2234899999999887654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.07  E-value=2e-11  Score=128.09  Aligned_cols=88  Identities=22%  Similarity=0.391  Sum_probs=79.0

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      .++|...+.||.|.||.|||++. ..++.+|||.++.....+..-.++||.+|+.++|+|||.++|-+...+.+++.|||
T Consensus        14 ~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwicMEy   93 (829)
T KOG0576|consen   14 QDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWICMEY   93 (829)
T ss_pred             ccchhheeeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeeeecCCCcChHHHHhhhhhhcCcEEEEEe
Confidence            35677778899999999999984 46888999999988777778889999999999999999999999999999999999


Q ss_pred             CCCCCHHHH
Q 011696          445 VPNNTLYFH  453 (479)
Q Consensus       445 ~~~GsL~~~  453 (479)
                      |.+|+|.++
T Consensus        94 cgggslQdi  102 (829)
T KOG0576|consen   94 CGGGSLQDI  102 (829)
T ss_pred             cCCCcccce
Confidence            999999653

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.07  E-value=3.9e-10  Score=108.30  Aligned_cols=96  Identities=16%  Similarity=0.176  Sum_probs=73.5

Q ss_pred             cCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCCCHHHHHhc
Q 011696          378 GGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHG  456 (479)
Q Consensus       378 G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~GsL~~~L~~  456 (479)
                      |.||.||+++. .+|+.||+|+++..     .++.+|...+....|+||+++++++.+.+..+|||||+.+|+|++++..
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~   78 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKS-----SEYSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHISK   78 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecch-----hhhhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHHHHH
Confidence            88999999985 56889999998643     2455666677777899999999999999999999999999999999876


Q ss_pred             CCcccchhHHHHHHHHHHhhcc
Q 011696          457 KWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       457 ~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ...+.+....++..-++.++.|
T Consensus        79 ~~~l~~~~~~~~~~ql~~~l~~  100 (237)
T cd05576          79 FLNIPEECVKRWAAEMVVALDA  100 (237)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHH
Confidence            5444444444444444444433

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.06  E-value=6.4e-10  Score=104.88  Aligned_cols=83  Identities=17%  Similarity=0.249  Sum_probs=69.7

Q ss_pred             ccccccCccceEEEEeCCCCEEEEEEeecCCCc--------chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ--------GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~--------~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      ++||+|+||.||+|.+ +|+.|+||+++.....        ..+++.+|+++|.+++|.||.....+|.+.+..+|||||
T Consensus         2 ~~l~~G~~~~vy~~~~-~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~   80 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF-LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVMEY   80 (211)
T ss_pred             cccccCceEEEEEEee-CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEEE
Confidence            5799999999999988 7788999987533211        123588999999999999999988888888889999999


Q ss_pred             CCCCCHHHHHhc
Q 011696          445 VPNNTLYFHLHG  456 (479)
Q Consensus       445 ~~~GsL~~~L~~  456 (479)
                      +++++|.+++..
T Consensus        81 ~~G~~L~~~~~~   92 (211)
T PRK14879         81 IEGEPLKDLINS   92 (211)
T ss_pred             eCCcCHHHHHHh
Confidence            999999988764

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.05  E-value=2.4e-10  Score=118.34  Aligned_cols=90  Identities=20%  Similarity=0.290  Sum_probs=70.8

Q ss_pred             cCccccccccccCccceEEEEeCC-CCEEEEEEeecCCCc--------chHhHHHHHHHHHhCC---CCCccceEEEEEe
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQ--------GEREFKAEVEIISRIH---HRHLVSLVGYCIS  434 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~-g~~VAVK~l~~~~~~--------~~~~f~~Ei~il~~l~---HpNIv~LlG~~~~  434 (479)
                      .+|...+.||+|+||.|+.+.++. ...|+||+|...+..        +....-.||.||++|+   |.||++|+.+|++
T Consensus       561 s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFEd  640 (772)
T KOG1152|consen  561 SDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFED  640 (772)
T ss_pred             ccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheeec
Confidence            456777889999999999999754 557999988543311        1113567999999998   9999999999999


Q ss_pred             CCeEEEEEecC-CCCCHHHHHhc
Q 011696          435 DDRRLLIYDYV-PNNTLYFHLHG  456 (479)
Q Consensus       435 ~~~~~LV~Ey~-~~GsL~~~L~~  456 (479)
                      ++++||++|-- ++-||++++..
T Consensus       641 dd~yyl~te~hg~gIDLFd~IE~  663 (772)
T KOG1152|consen  641 DDYYYLETEVHGEGIDLFDFIEF  663 (772)
T ss_pred             CCeeEEEecCCCCCcchhhhhhc
Confidence            99999999954 56788776553

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.03  E-value=4.6e-11  Score=111.09  Aligned_cols=81  Identities=22%  Similarity=0.494  Sum_probs=68.9

Q ss_pred             cCccccccccccCccceEEEE-eCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCC-CCCccceEEEEEeCCe--EEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIH-HRHLVSLVGYCISDDR--RLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~-~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~-HpNIv~LlG~~~~~~~--~~LV~  442 (479)
                      ++|...+++|+|.|.+||.|. +.+++.++||.|+-   ...+.+.+||+||..|+ |+||++|+++..+.+.  -.|||
T Consensus        38 ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKP---VkkkKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaLiF  114 (338)
T KOG0668|consen   38 DDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKP---VKKKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSLIF  114 (338)
T ss_pred             chHHHHHHHcCccHhhHhcccccCCCceEEEeeech---HHHHHHHHHHHHHHhccCCCCeeehhhhhcCccccCchhHh
Confidence            456667889999999999997 56888999999973   33567999999999996 9999999999887654  46999


Q ss_pred             ecCCCCCH
Q 011696          443 DYVPNNTL  450 (479)
Q Consensus       443 Ey~~~GsL  450 (479)
                      ||+.|.|.
T Consensus       115 E~v~n~Df  122 (338)
T KOG0668|consen  115 EYVNNTDF  122 (338)
T ss_pred             hhhccccH
Confidence            99999887

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.03  E-value=1.3e-09  Score=101.76  Aligned_cols=79  Identities=15%  Similarity=0.186  Sum_probs=59.5

Q ss_pred             cccccccCccceEEEEeCCCCEEEEEEeecCCCc---------------------c-----hHhHHHHHHHHHhCCCCCc
Q 011696          372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ---------------------G-----EREFKAEVEIISRIHHRHL  425 (479)
Q Consensus       372 ~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~---------------------~-----~~~f~~Ei~il~~l~HpNI  425 (479)
                      ...||+|+||+||+|...+|+.||||.++.....                     .     ...+.+|++.|.+++|.+|
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   81 (190)
T cd05145           2 NGCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGV   81 (190)
T ss_pred             CceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3679999999999999778999999998754211                     0     1124689999999999998


Q ss_pred             cceEEEEEeCCeEEEEEecCCCCCHHH
Q 011696          426 VSLVGYCISDDRRLLIYDYVPNNTLYF  452 (479)
Q Consensus       426 v~LlG~~~~~~~~~LV~Ey~~~GsL~~  452 (479)
                      .....+...  ..+|||||+.++++..
T Consensus        82 ~~p~~~~~~--~~~lVmE~~~g~~~~~  106 (190)
T cd05145          82 PVPEPILLK--KNVLVMEFIGDDGSPA  106 (190)
T ss_pred             CCceEEEec--CCEEEEEEecCCCchh
Confidence            665555433  2489999999986543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.01  E-value=4.8e-10  Score=115.70  Aligned_cols=97  Identities=19%  Similarity=0.304  Sum_probs=81.9

Q ss_pred             cCccccccccccCccceEEEEeCCCCEEEEEEeecCCC--cchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEEEEe
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGG--QGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      ..|...+.||+||-.+|||+...+.+.+|+|++.....  .....|++||.+|.+| .|.+||+|++|-+.++.+|||||
T Consensus       361 ~~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmvmE  440 (677)
T KOG0596|consen  361 REYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMVME  440 (677)
T ss_pred             chhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEEee
Confidence            34566788999999999999988889999998864433  3345799999999999 69999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCcccchh
Q 011696          444 YVPNNTLYFHLHGKWQLGFDI  464 (479)
Q Consensus       444 y~~~GsL~~~L~~~~~~~~~~  464 (479)
                      |- +.||..+|..+|..-.+|
T Consensus       441 ~G-d~DL~kiL~k~~~~~~~~  460 (677)
T KOG0596|consen  441 CG-DIDLNKILKKKKSIDPDW  460 (677)
T ss_pred             cc-cccHHHHHHhccCCCchH
Confidence            65 568999999988766655

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.00  E-value=1.1e-09  Score=102.41  Aligned_cols=82  Identities=18%  Similarity=0.293  Sum_probs=66.7

Q ss_pred             cccccCccceEEEEeCCCCEEEEEEeecCCC-c-------chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          374 LLGEGGFGSVYKGYLPDGREVAIKQLKIGGG-Q-------GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       374 ~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~-~-------~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      +||+|+||.||+|.+ +|+.|+||++..... .       ..+++.+|+++|.+++|.||.....++...+..+|||||+
T Consensus         1 ~ig~G~~~~vy~~~~-~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~   79 (199)
T TIGR03724         1 LIAKGAEAIIYLGDF-LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEYI   79 (199)
T ss_pred             CCCCCceEEEEEeec-CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEE
Confidence            489999999999996 678899998753221 1       1245889999999999988877777777788889999999


Q ss_pred             CCCCHHHHHhc
Q 011696          446 PNNTLYFHLHG  456 (479)
Q Consensus       446 ~~GsL~~~L~~  456 (479)
                      .+++|.+++..
T Consensus        80 ~g~~l~~~~~~   90 (199)
T TIGR03724        80 EGKPLKDVIEE   90 (199)
T ss_pred             CCccHHHHHhh
Confidence            99999887754

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=98.99  E-value=8.8e-10  Score=119.10  Aligned_cols=89  Identities=18%  Similarity=0.269  Sum_probs=68.4

Q ss_pred             hcCccccccccccCccceEEEEeCCCCEEEEEEe-ecC-CC------cchHhHHHHHHHHHhCCCCCccceEEEEEeCCe
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQL-KIG-GG------QGEREFKAEVEIISRIHHRHLVSLVGYCISDDR  437 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l-~~~-~~------~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~  437 (479)
                      ...|...++||+|+||+||+|.+.++ .+++|+. ... ..      ...++|.+|+++|.+++|.||+..+.++.+.+.
T Consensus       332 ~~~~~~~~~iG~G~~g~Vy~~~~~~~-~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~  410 (535)
T PRK09605        332 KRRKIPDHLIGKGAEADIKKGEYLGR-DAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPEE  410 (535)
T ss_pred             ccccCccceeccCCcEEEEEEeecCc-cceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCCC
Confidence            34445678999999999999987444 4444433 211 11      112468999999999999999999999988888


Q ss_pred             EEEEEecCCCCCHHHHHh
Q 011696          438 RLLIYDYVPNNTLYFHLH  455 (479)
Q Consensus       438 ~~LV~Ey~~~GsL~~~L~  455 (479)
                      .+|||||+++++|.++++
T Consensus       411 ~~lv~E~~~g~~L~~~l~  428 (535)
T PRK09605        411 KTIVMEYIGGKDLKDVLE  428 (535)
T ss_pred             CEEEEEecCCCcHHHHHH
Confidence            899999999999988764

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=98.97  E-value=2.1e-10  Score=115.82  Aligned_cols=112  Identities=25%  Similarity=0.350  Sum_probs=85.5

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      .+.|...++||+|+||+||-+.. ..|+++|.|+|....   ...+.--++|-.||.+++.+.||.|-..|...+.+|||
T Consensus       184 ~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~LClV  263 (591)
T KOG0986|consen  184 KNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDALCLV  263 (591)
T ss_pred             ccceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCceEEE
Confidence            35678889999999999999874 569999999985332   23334578899999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCcccchhH--HHHHHHHHHhhc
Q 011696          442 YDYVPNNTLYFHLHGKWQLGFDIR--NHNNGLLILTVL  477 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~~~~~~~~~--~~~~~l~~~~~~  477 (479)
                      |..|.||||..||++-..-+++..  .-+..-+++.|+
T Consensus       264 LtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLe  301 (591)
T KOG0986|consen  264 LTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLE  301 (591)
T ss_pred             EEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHH
Confidence            999999999888876543334333  333333444443

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.96  E-value=1.3e-11  Score=116.05  Aligned_cols=87  Identities=23%  Similarity=0.439  Sum_probs=66.0

Q ss_pred             ccccccccccCccceEEEEe-CCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeC--------Ce
Q 011696          369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISD--------DR  437 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~--------~~  437 (479)
                      |....+||+|.||+||+++. +.|+.||+|++...+.  ..-..-++|+++|..|+|.||+.|+.+|...        ..
T Consensus        19 yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~r~t   98 (376)
T KOG0669|consen   19 YEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRDRAT   98 (376)
T ss_pred             HHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcccccce
Confidence            34447899999999999985 4577899987643222  1223578999999999999999999999643        23


Q ss_pred             EEEEEecCCCCCHHHHHhc
Q 011696          438 RLLIYDYVPNNTLYFHLHG  456 (479)
Q Consensus       438 ~~LV~Ey~~~GsL~~~L~~  456 (479)
                      +||||+||++ ||..+|..
T Consensus        99 ~ylVf~~ceh-DLaGlLsn  116 (376)
T KOG0669|consen   99 FYLVFDFCEH-DLAGLLSN  116 (376)
T ss_pred             eeeeHHHhhh-hHHHHhcC
Confidence            7899999997 56665554

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=98.94  E-value=3.8e-09  Score=101.04  Aligned_cols=87  Identities=13%  Similarity=0.091  Sum_probs=70.8

Q ss_pred             hcCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchH---------hHHHHHHHHHhCCCCCccceEEEEEeC-
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGER---------EFKAEVEIISRIHHRHLVSLVGYCISD-  435 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~---------~f~~Ei~il~~l~HpNIv~LlG~~~~~-  435 (479)
                      .++|...++||+|+||.||+... +++.+|||.++.......+         .|.+|++.+.+|+|.||..+..++... 
T Consensus        30 ~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~~  108 (232)
T PRK10359         30 SYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLAE  108 (232)
T ss_pred             hCceEEEEEecCCCceEEEEEec-CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeecc
Confidence            57788899999999999999766 6778999999744332222         268999999999999999999986643 


Q ss_pred             -------CeEEEEEecCCCCCHHHH
Q 011696          436 -------DRRLLIYDYVPNNTLYFH  453 (479)
Q Consensus       436 -------~~~~LV~Ey~~~GsL~~~  453 (479)
                             ...+|||||++|.+|.++
T Consensus       109 ~~~~~~~~~~~lvmEyi~G~tL~~~  133 (232)
T PRK10359        109 RKTLRYAHTYIMLIEYIEGVELNDM  133 (232)
T ss_pred             cccccccCCeEEEEEEECCccHHHh
Confidence                   247899999999999776

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=98.87  E-value=2.6e-09  Score=107.27  Aligned_cols=93  Identities=22%  Similarity=0.342  Sum_probs=77.9

Q ss_pred             HHHHhcCccccccccccCccceEEEEeC----CCCEEEEEEeecCCCcchHhHHHHHHHHHhC-CCCCccceEEEEEeCC
Q 011696          362 LVKATDGFADQNLLGEGGFGSVYKGYLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCISDD  436 (479)
Q Consensus       362 l~~~~~~f~~~~~IG~G~fG~Vykg~~~----~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~  436 (479)
                      +....+.|...++||+|.|++||++++.    .++.||+|.+...+  .-....+|+++|.++ .|.||+++.+++..++
T Consensus        31 ~p~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts--~p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd  108 (418)
T KOG1167|consen   31 IPFISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTS--SPSRILNELEMLYRLGGSDNIIKLNGCFRNND  108 (418)
T ss_pred             hhhhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeeccccc--CchHHHHHHHHHHHhccchhhhcchhhhccCC
Confidence            3444567888899999999999999853    45689999986433  234589999999999 6999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhc
Q 011696          437 RRLLIYDYVPNNTLYFHLHG  456 (479)
Q Consensus       437 ~~~LV~Ey~~~GsL~~~L~~  456 (479)
                      ..++|+||+++.+..+++.+
T Consensus       109 ~v~ivlp~~~H~~f~~l~~~  128 (418)
T KOG1167|consen  109 QVAIVLPYFEHDRFRDLYRS  128 (418)
T ss_pred             eeEEEecccCccCHHHHHhc
Confidence            99999999999988777654

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=98.87  E-value=2.4e-10  Score=108.57  Aligned_cols=77  Identities=19%  Similarity=0.384  Sum_probs=64.3

Q ss_pred             cccccccccCccceEEEEe-CCCCEEEEEEeecCCC-cchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEEEEecCC
Q 011696          370 ADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG-QGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYDYVP  446 (479)
Q Consensus       370 ~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~LV~Ey~~  446 (479)
                      +....||.|.||+|+|-.. ..|+..|||+++.... .+.++|+.|.++..+- +.+|||+|+|.|..+...+|-||+|.
T Consensus        67 qdlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCMELMd  146 (361)
T KOG1006|consen   67 QDLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICMELMD  146 (361)
T ss_pred             HHHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeHHHHh
Confidence            3346799999999999875 4589999999986655 4456799999766554 88999999999999999999999986

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=98.82  E-value=1e-08  Score=110.50  Aligned_cols=83  Identities=20%  Similarity=0.316  Sum_probs=67.7

Q ss_pred             ccccccccccCccc-eEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEEEEecCC
Q 011696          369 FADQNLLGEGGFGS-VYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYDYVP  446 (479)
Q Consensus       369 f~~~~~IG~G~fG~-Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~LV~Ey~~  446 (479)
                      |...+++|.|+-|+ ||+|.+ +||.||||+|...   ..+...+||.+|+.. +|+||||++|.-.+...+||.+|.|.
T Consensus       511 ~~~~eilG~Gs~Gt~Vf~G~y-e~R~VAVKrll~e---~~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalELC~  586 (903)
T KOG1027|consen  511 FSPKEILGYGSNGTVVFRGVY-EGREVAVKRLLEE---FFDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIALELCA  586 (903)
T ss_pred             eccHHHcccCCCCcEEEEEee-CCceehHHHHhhH---hHHHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEehHhh
Confidence            55567899999985 899999 8899999998531   122357999999998 79999999888777888999999885


Q ss_pred             CCCHHHHHhc
Q 011696          447 NNTLYFHLHG  456 (479)
Q Consensus       447 ~GsL~~~L~~  456 (479)
                       .+|.+++..
T Consensus       587 -~sL~dlie~  595 (903)
T KOG1027|consen  587 -CSLQDLIES  595 (903)
T ss_pred             -hhHHHHHhc
Confidence             478888876

>smart00090 RIO RIO-like kinase

Probab=98.82  E-value=1e-08  Score=99.06  Aligned_cols=83  Identities=17%  Similarity=0.192  Sum_probs=61.1

Q ss_pred             CccccccccccCccceEEEE--eCCCCEEEEEEeecCCCc------------------------chHhHHHHHHHHHhCC
Q 011696          368 GFADQNLLGEGGFGSVYKGY--LPDGREVAIKQLKIGGGQ------------------------GEREFKAEVEIISRIH  421 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~--~~~g~~VAVK~l~~~~~~------------------------~~~~f~~Ei~il~~l~  421 (479)
                      .|...+.||+|+||.||+|+  ..+|+.||||+++.....                        ....+.+|+++|.+|+
T Consensus        29 ~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~  108 (237)
T smart00090       29 LSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLY  108 (237)
T ss_pred             hHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            46778899999999999998  568999999998743210                        0123678999999997


Q ss_pred             CCCc--cceEEEEEeCCeEEEEEecCCCCCHHHHH
Q 011696          422 HRHL--VSLVGYCISDDRRLLIYDYVPNNTLYFHL  454 (479)
Q Consensus       422 HpNI--v~LlG~~~~~~~~~LV~Ey~~~GsL~~~L  454 (479)
                      |.+|  .+++++    ...+|||||+.+++|..++
T Consensus       109 ~~~i~~p~~~~~----~~~~lV~E~~~g~~L~~~~  139 (237)
T smart00090      109 EAGVPVPKPIAW----RRNVLVMEFIGGDGLPAPR  139 (237)
T ss_pred             hcCCCCCeeeEe----cCceEEEEEecCCcccccc
Confidence            6432  333332    2358999999999987654

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.81  E-value=2.3e-09  Score=104.69  Aligned_cols=95  Identities=20%  Similarity=0.324  Sum_probs=76.5

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      ++|...++||+|.|++|.++++ +..+.+|+|.++...   .++.+..+.|-.+.... +|+.+|.|..+|..+..+|+|
T Consensus       250 ~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtesrlffv  329 (593)
T KOG0695|consen  250 QDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRLFFV  329 (593)
T ss_pred             ccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccceEEEE
Confidence            5688889999999999999986 456789999987443   33344567777777765 899999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCccc
Q 011696          442 YDYVPNNTLYFHLHGKWQLG  461 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~~~~~  461 (479)
                      .||+.+|||..++..++++-
T Consensus       330 ieyv~ggdlmfhmqrqrklp  349 (593)
T KOG0695|consen  330 IEYVNGGDLMFHMQRQRKLP  349 (593)
T ss_pred             EEEecCcceeeehhhhhcCc
Confidence            99999999977666555443

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=98.75  E-value=2.6e-08  Score=93.36  Aligned_cols=91  Identities=22%  Similarity=0.277  Sum_probs=66.0

Q ss_pred             HHHHHHhcCccccccccccCccceEEEEeCCCCEEEEEEeecCCC-----c-----------------chHhHHHHHHHH
Q 011696          360 EELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGG-----Q-----------------GEREFKAEVEII  417 (479)
Q Consensus       360 eel~~~~~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~-----~-----------------~~~~f~~Ei~il  417 (479)
                      +++......|...+.||+|+||.||+|...+|+.||||+++....     .                 ....+.+|+.++
T Consensus         8 ~~~~~~~~~~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l   87 (198)
T cd05144           8 HTLVKRGVVESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAAL   87 (198)
T ss_pred             HHHHHcCchhhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHH
Confidence            444444444667789999999999999987899999998754220     0                 011367899999


Q ss_pred             HhCCCCC--ccceEEEEEeCCeEEEEEecCCCCCHHHHH
Q 011696          418 SRIHHRH--LVSLVGYCISDDRRLLIYDYVPNNTLYFHL  454 (479)
Q Consensus       418 ~~l~HpN--Iv~LlG~~~~~~~~~LV~Ey~~~GsL~~~L  454 (479)
                      .++.|.|  +..+++    .+..+|||||+.+++|.+++
T Consensus        88 ~~l~~~~i~v~~~~~----~~~~~lv~e~~~g~~L~~~~  122 (198)
T cd05144          88 KALYEEGFPVPKPID----WNRHAVVMEYIDGVELYRVR  122 (198)
T ss_pred             HHHHHcCCCCCceee----cCCceEEEEEeCCcchhhcc
Confidence            9998874  444444    24558999999999987654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.75  E-value=2.5e-09  Score=106.97  Aligned_cols=90  Identities=24%  Similarity=0.283  Sum_probs=72.3

Q ss_pred             cCccccccccccCccceEEEEeCC-CCEEEEEEeecCCC---cchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGG---QGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~-g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      .+|....+||+|+||.|.+++.+. .+.+|||+|+..-.   ++.+--+.|-++|+-. +-+.||+|..++...+.+|+|
T Consensus       349 tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDRLyFV  428 (683)
T KOG0696|consen  349 TDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDRLYFV  428 (683)
T ss_pred             cccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhheeeE
Confidence            357777899999999999998643 56799999975432   2333356788888876 678999999999999999999


Q ss_pred             EecCCCCCHHHHHhc
Q 011696          442 YDYVPNNTLYFHLHG  456 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~  456 (479)
                      |||+.+|||.+++..
T Consensus       429 MEyvnGGDLMyhiQQ  443 (683)
T KOG0696|consen  429 MEYVNGGDLMYHIQQ  443 (683)
T ss_pred             EEEecCchhhhHHHH
Confidence            999999999877764

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=98.72  E-value=3.8e-09  Score=102.02  Aligned_cols=92  Identities=21%  Similarity=0.291  Sum_probs=70.4

Q ss_pred             hcCccc-cccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhC-CCCCccceEEEEEe----CCeE
Q 011696          366 TDGFAD-QNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCIS----DDRR  438 (479)
Q Consensus       366 ~~~f~~-~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~----~~~~  438 (479)
                      +++|.. .++||-|--|.|..++. ..|+.+|+|.|..     ...-.+|+++.-.. .|+|||+++++|.+    ...+
T Consensus        60 tedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~D-----s~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkcL  134 (400)
T KOG0604|consen   60 TEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLD-----SPKARREVELHWMASGHPHIVSIIDVYENSYQGRKCL  134 (400)
T ss_pred             hhhheehhhhhccccCCceEEEEeccchhhhHHHHHhc-----CHHHHhHhhhhhhhcCCCceEEeehhhhhhccCceee
Confidence            344443 47899999999999975 4588899999863     33567888876666 79999999999864    3456


Q ss_pred             EEEEecCCCCCHHHHHhcCCcccc
Q 011696          439 LLIYDYVPNNTLYFHLHGKWQLGF  462 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~~~~~~  462 (479)
                      ++|||+|+||+|+..+..+....+
T Consensus       135 LiVmE~meGGeLfsriq~~g~~af  158 (400)
T KOG0604|consen  135 LIVMECMEGGELFSRIQDRGDQAF  158 (400)
T ss_pred             EeeeecccchHHHHHHHHcccccc
Confidence            789999999999988876655333

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=98.72  E-value=1.7e-08  Score=109.52  Aligned_cols=89  Identities=26%  Similarity=0.323  Sum_probs=60.2

Q ss_pred             HhcCccccccccccCccceEEEEeC-C----CCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEE------EE
Q 011696          365 ATDGFADQNLLGEGGFGSVYKGYLP-D----GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGY------CI  433 (479)
Q Consensus       365 ~~~~f~~~~~IG~G~fG~Vykg~~~-~----g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~------~~  433 (479)
                      ..++|...++||+|+||+||+|++. +    ++.||||+++....  .+.+.+|  .+.+..|.+++.++..      +.
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~--~e~~~~e--~l~~~~~~~~~~~~~~~~~~~~~~  205 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGA--VEIWMNE--RVRRACPNSCADFVYGFLEPVSSK  205 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccch--hHHHHHH--HHHhhchhhHHHHHHhhhcccccc
Confidence            4578889999999999999999864 4    68899998864321  1222222  1222233333333222      34


Q ss_pred             eCCeEEEEEecCCCCCHHHHHhcC
Q 011696          434 SDDRRLLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       434 ~~~~~~LV~Ey~~~GsL~~~L~~~  457 (479)
                      .++..+|||||+.+|+|+++++.+
T Consensus       206 ~~~~~~LV~ey~~~gsL~~~l~~~  229 (566)
T PLN03225        206 KEDEYWLVWRYEGESTLADLMQSK  229 (566)
T ss_pred             cCCceEEEEEecCCCcHHHHHHhc
Confidence            566789999999999999988754

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=98.71  E-value=4.1e-09  Score=117.44  Aligned_cols=76  Identities=32%  Similarity=0.524  Sum_probs=60.4

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCC-CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|.+.++||+|+||.|||++- -||+.+|||+|.... ....+.+.+|+++|++|+|+|||+++..+++....+-++
T Consensus       479 ~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~~~~~~~  556 (1351)
T KOG1035|consen  479 NDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNVVRYYSAWVESTAELTVL  556 (1351)
T ss_pred             hhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcceeeeehhhhccCCccccc
Confidence            4566678999999999999973 389999999997554 223356899999999999999999998877655444333

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=98.69  E-value=5e-08  Score=85.40  Aligned_cols=78  Identities=18%  Similarity=0.138  Sum_probs=66.0

Q ss_pred             cccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCC--CCccceEEEEEeCCeEEEEEecCCCCC
Q 011696          372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHH--RHLVSLVGYCISDDRRLLIYDYVPNNT  449 (479)
Q Consensus       372 ~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~H--pNIv~LlG~~~~~~~~~LV~Ey~~~Gs  449 (479)
                      .+.||+|.++.||++... ++.++||+++....  ..+|.+|+.+|.+|+|  .++.++++++...+..++||||+.++.
T Consensus         3 ~~~i~~g~~~~v~~~~~~-~~~~~iK~~~~~~~--~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~~g~~   79 (155)
T cd05120           3 IKLLKGGLTNRVYLLGTK-DEDYVLKINPSREK--GADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIEGET   79 (155)
T ss_pred             ceecccccccceEEEEec-CCeEEEEecCCCCc--hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEecCCee
Confidence            367999999999999984 47899998864333  5679999999999977  599999999888888999999999988


Q ss_pred             HHH
Q 011696          450 LYF  452 (479)
Q Consensus       450 L~~  452 (479)
                      |..
T Consensus        80 ~~~   82 (155)
T cd05120          80 LDE   82 (155)
T ss_pred             ccc
Confidence            764

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=98.68  E-value=4.1e-09  Score=100.40  Aligned_cols=86  Identities=24%  Similarity=0.470  Sum_probs=73.5

Q ss_pred             cccccccCccceEEEEeCCCCEEEEEEeecCC--CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCCC
Q 011696          372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNT  449 (479)
Q Consensus       372 ~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~Gs  449 (479)
                      ..+|.+...|+.|+|++ .|..+++|.|+...  ....++|.+|.-.|+-+.|+||+.++|.|....+..+|..||..|+
T Consensus       195 ~tkl~e~hsgelwrgrw-qgndivakil~vr~~t~risrdfneefp~lrifshpnilpvlgacnsppnlv~isq~mp~gs  273 (448)
T KOG0195|consen  195 ITKLAESHSGELWRGRW-QGNDIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYMPFGS  273 (448)
T ss_pred             hhhhccCCCcccccccc-cCcchhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCCCCceEeeeeccchH
Confidence            34588899999999999 55667778886443  3334689999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCC
Q 011696          450 LYFHLHGKW  458 (479)
Q Consensus       450 L~~~L~~~~  458 (479)
                      |+..||+..
T Consensus       274 lynvlhe~t  282 (448)
T KOG0195|consen  274 LYNVLHEQT  282 (448)
T ss_pred             HHHHHhcCc
Confidence            999999863

>PHA02882 putative serine/threonine kinase; Provisional

Probab=98.68  E-value=1e-07  Score=94.77  Aligned_cols=80  Identities=19%  Similarity=0.232  Sum_probs=53.8

Q ss_pred             cCccccccccccCccceEEEEeCC----CCEEEEEEeecCCCcch-----------HhHHHHHHHHHhCCCCCccceEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPD----GREVAIKQLKIGGGQGE-----------REFKAEVEIISRIHHRHLVSLVGY  431 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~----g~~VAVK~l~~~~~~~~-----------~~f~~Ei~il~~l~HpNIv~LlG~  431 (479)
                      ++|...++||+|+||+||+|...+    ++.+++|..........           ..+.+++..+..++|.||++++|+
T Consensus        12 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~   91 (294)
T PHA02882         12 KEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYGC   91 (294)
T ss_pred             CceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEEe
Confidence            467788999999999999998644    34566665432221111           123344456667899999999998


Q ss_pred             EEeCC----eEEEEEecCC
Q 011696          432 CISDD----RRLLIYDYVP  446 (479)
Q Consensus       432 ~~~~~----~~~LV~Ey~~  446 (479)
                      +...+    ..++++|++.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~  110 (294)
T PHA02882         92 GSFKRCRMYYRFILLEKLV  110 (294)
T ss_pred             eeEecCCceEEEEEEehhc
Confidence            76554    3467777764

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=98.59  E-value=2.1e-08  Score=95.72  Aligned_cols=86  Identities=17%  Similarity=0.318  Sum_probs=67.1

Q ss_pred             hcCccccccccccCccceEEEEeCC-CCEEEEEEeecCCCcchHhHHHHHHHHHhC-CCCCccceEEEE-EeCCeEEEEE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYC-ISDDRRLLIY  442 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~~-g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~-~~~~~~~LV~  442 (479)
                      .+.|...+.||+|+||.+.+++... .+.+++|.+... ....++|.+|..---.| .|.||+.-+.+. ...+..++++
T Consensus        23 ~d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p-~tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~q  101 (378)
T KOG1345|consen   23 EDVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRP-QTTQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFVQ  101 (378)
T ss_pred             hhhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcc-hhhHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEee
Confidence            3567778899999999999998644 557888887532 23467999999766667 699999887764 4566777899


Q ss_pred             ecCCCCCHHH
Q 011696          443 DYVPNNTLYF  452 (479)
Q Consensus       443 Ey~~~GsL~~  452 (479)
                      ||++.|||.+
T Consensus       102 E~aP~gdL~s  111 (378)
T KOG1345|consen  102 EFAPRGDLRS  111 (378)
T ss_pred             ccCccchhhh
Confidence            9999999953

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=98.58  E-value=3.8e-07  Score=88.70  Aligned_cols=88  Identities=26%  Similarity=0.368  Sum_probs=74.0

Q ss_pred             ccccccccccCccceEEEEeCCCCEEEEEEeecCCCc---chHhHHHHHHHHHhCCCC-CccceEEEEEeCCeEEEEEec
Q 011696          369 FADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ---GEREFKAEVEIISRIHHR-HLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~---~~~~f~~Ei~il~~l~Hp-NIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      |...+.||.|.||.||++...  +.+++|.+......   ....|.+|+.++++++|. ||+++++++...+..++++||
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~--~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   79 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR--KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEY   79 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec--cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEec
Confidence            445678999999999999875  78999999754433   356899999999999988 799999999777778999999


Q ss_pred             CCCCCHHHHHhcCC
Q 011696          445 VPNNTLYFHLHGKW  458 (479)
Q Consensus       445 ~~~GsL~~~L~~~~  458 (479)
                      +.+++|.++++..+
T Consensus        80 ~~~~~l~~~~~~~~   93 (384)
T COG0515          80 VDGGSLEDLLKKIG   93 (384)
T ss_pred             CCCCcHHHHHHhcc
Confidence            99999997777554

>PRK12274 serine/threonine protein kinase; Provisional

Probab=98.55  E-value=1.1e-07  Score=89.53  Aligned_cols=79  Identities=16%  Similarity=0.127  Sum_probs=61.4

Q ss_pred             cccccccccCccceEEEEeCCCCEEEEEEeecCCCcc----hHhHHHHHHHHHhCC-CCCccceEEEEEeCCeEEEEEec
Q 011696          370 ADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQG----EREFKAEVEIISRIH-HRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       370 ~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~----~~~f~~Ei~il~~l~-HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      .....|++|+||+||.... +++.|+.+.+.......    .+.|.+|+++|++|+ |.+|.+++++    +..+++|||
T Consensus         5 ~~~~~l~~~~f~~v~~~~~-~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~~~lvmey   79 (218)
T PRK12274          5 AVNEPLKSDTFGRILLVRG-GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW----DGRHLDRSY   79 (218)
T ss_pred             ccceeecCCCcceEEEeec-CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cCEEEEEee
Confidence            3457899999999997665 77888888876443321    225889999999995 5889999886    456999999


Q ss_pred             CCCCCHHHH
Q 011696          445 VPNNTLYFH  453 (479)
Q Consensus       445 ~~~GsL~~~  453 (479)
                      +.+++|+..
T Consensus        80 I~G~~L~~~   88 (218)
T PRK12274         80 LAGAAMYQR   88 (218)
T ss_pred             ecCccHHhh
Confidence            999998644

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=98.49  E-value=1e-08  Score=104.96  Aligned_cols=111  Identities=16%  Similarity=0.143  Sum_probs=88.4

Q ss_pred             ccccccccccCccceEEEEeCCCC-EEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          369 FADQNLLGEGGFGSVYKGYLPDGR-EVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~~~g~-~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      +.....||.|+||+|-+..++..+ .+|+|+|+...   ...++....|-+||.+++.+.||+|+-.|.++.+.||+||-
T Consensus       422 l~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvYmLmEa  501 (732)
T KOG0614|consen  422 LKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYVYMLMEA  501 (732)
T ss_pred             hhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccchhhhhhHHh
Confidence            334456999999999988874333 37888886433   33445688999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          445 VPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       445 ~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      |-||+|+..|+.+..+..+..+-+.++++.++.||
T Consensus       502 ClGGElWTiLrdRg~Fdd~tarF~~acv~EAfeYL  536 (732)
T KOG0614|consen  502 CLGGELWTILRDRGSFDDYTARFYVACVLEAFEYL  536 (732)
T ss_pred             hcCchhhhhhhhcCCcccchhhhhHHHHHHHHHHH
Confidence            99999998888887776666666666666666665

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=98.49  E-value=5.5e-08  Score=93.00  Aligned_cols=76  Identities=21%  Similarity=0.451  Sum_probs=63.9

Q ss_pred             cccccccCccceEEEEe-CCCCEEEEEEeecCCC-cchHhHHHHHHHHHhCC-CCCccceEEEEEeCCeEEEEEecCCC
Q 011696          372 QNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG-QGEREFKAEVEIISRIH-HRHLVSLVGYCISDDRRLLIYDYVPN  447 (479)
Q Consensus       372 ~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~-HpNIv~LlG~~~~~~~~~LV~Ey~~~  447 (479)
                      ...||.|..|+|||.++ ..|..+|||++.+.+. ++.+.++..++++.+.+ .+.||+.+|||+.+...++-||.|..
T Consensus        97 l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~IcMelMs~  175 (391)
T KOG0983|consen   97 LGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVFICMELMST  175 (391)
T ss_pred             HHhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHHHHHHHHHH
Confidence            35699999999999986 4588999999976554 44467999999988875 89999999999999988888888753

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.47  E-value=3.2e-07  Score=93.96  Aligned_cols=86  Identities=17%  Similarity=0.298  Sum_probs=65.2

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCC-C-------CCccceEEEEEe---
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIH-H-------RHLVSLVGYCIS---  434 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~-H-------pNIv~LlG~~~~---  434 (479)
                      .+|...++||=|.|.+||+++. .+.+.||+|+.|.. ..-.+.-+.||++|++++ |       .+||+|++.|..   
T Consensus        78 gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSA-qhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsGp  156 (590)
T KOG1290|consen   78 GRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSA-QHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSGP  156 (590)
T ss_pred             ceEEEEEeccccccceeEEEeeccCCeEEEEEEEehh-hHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecCC
Confidence            5677889999999999999984 56788999998742 222345788999999873 2       479999999864   


Q ss_pred             -CCeEEEEEecCCCCCHHHHH
Q 011696          435 -DDRRLLIYDYVPNNTLYFHL  454 (479)
Q Consensus       435 -~~~~~LV~Ey~~~GsL~~~L  454 (479)
                       +..+||||||+-. +|+.++
T Consensus       157 NG~HVCMVfEvLGd-nLLklI  176 (590)
T KOG1290|consen  157 NGQHVCMVFEVLGD-NLLKLI  176 (590)
T ss_pred             CCcEEEEEehhhhh-HHHHHH
Confidence             4578999998854 444333

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=98.43  E-value=1.8e-07  Score=96.34  Aligned_cols=96  Identities=22%  Similarity=0.297  Sum_probs=72.9

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCC------CCccceEEEEEeCCeEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHH------RHLVSLVGYCISDDRRL  439 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~H------pNIv~LlG~~~~~~~~~  439 (479)
                      ..|......|+|-|+.|.+|.. ..|+.||||+|+.+ ....+.=++|++||++|+.      -|+|+|+-.|...+.+|
T Consensus       432 ~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnN-E~M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hknHLC  510 (752)
T KOG0670|consen  432 SRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNN-EVMHKTGLKELEILKKLNDADPEDKFHCLRLFRHFKHKNHLC  510 (752)
T ss_pred             ceeEEEeccccceeeeeeeccccCCCCeeEEEEeecc-hHHhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhhcceeE
Confidence            3455566789999999999984 45889999999743 2334456889999999853      68899999999999999


Q ss_pred             EEEecCCCCCHHHHHhcC-Ccccchh
Q 011696          440 LIYDYVPNNTLYFHLHGK-WQLGFDI  464 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~-~~~~~~~  464 (479)
                      ||||-+.. +|.+.|..- ..++|.|
T Consensus       511 lVFE~Lsl-NLRevLKKyG~nvGL~i  535 (752)
T KOG0670|consen  511 LVFEPLSL-NLREVLKKYGRNVGLHI  535 (752)
T ss_pred             EEehhhhc-hHHHHHHHhCcccceee
Confidence            99997654 688888642 2344544

>cd05119 RIO RIO kinase family, catalytic domain

Probab=98.42  E-value=6.1e-07  Score=82.78  Aligned_cols=75  Identities=19%  Similarity=0.393  Sum_probs=51.3

Q ss_pred             cccccccCccceEEEEeCCCCEEEEEEeecCCCc--chHhH----------------------HHHHHHHHhCCCCC--c
Q 011696          372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ--GEREF----------------------KAEVEIISRIHHRH--L  425 (479)
Q Consensus       372 ~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~--~~~~f----------------------~~Ei~il~~l~HpN--I  425 (479)
                      .++||+|+||+||+|...+|+.||||+++.....  ...++                      ..|.+.+.++++.+  +
T Consensus         2 ~~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~   81 (187)
T cd05119           2 GGPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPV   81 (187)
T ss_pred             CcccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCC
Confidence            3679999999999999878999999998643211  11111                      35666677765543  3


Q ss_pred             cceEEEEEeCCeEEEEEecCCCCCH
Q 011696          426 VSLVGYCISDDRRLLIYDYVPNNTL  450 (479)
Q Consensus       426 v~LlG~~~~~~~~~LV~Ey~~~GsL  450 (479)
                      .+++++    ...+|||||+.+|.+
T Consensus        82 ~~~~~~----~~~~lv~e~~~g~~~  102 (187)
T cd05119          82 PKPIDL----NRHVLVMEFIGGDGI  102 (187)
T ss_pred             CceEec----CCCEEEEEEeCCCCc
Confidence            444443    346899999999644

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=98.41  E-value=2e-07  Score=98.36  Aligned_cols=90  Identities=20%  Similarity=0.274  Sum_probs=72.8

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEEEEe
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      ++.|.....||+|+|+.|.++.. ..++..+||++...    ..+-.+|+.++.+. +|+||+++.++|.++.+.++|||
T Consensus       321 ~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~----~~~~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v~e  396 (612)
T KOG0603|consen  321 TESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKR----ADDNQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLVME  396 (612)
T ss_pred             chhhccccccCCCCccceeeeeccccccchhheecccc----ccccccccchhhhhcCCCcceeecceecCCceeeeeeh
Confidence            45566677799999999999874 56788999998643    33566788777776 89999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCc
Q 011696          444 YVPNNTLYFHLHGKWQ  459 (479)
Q Consensus       444 y~~~GsL~~~L~~~~~  459 (479)
                      ++.+|-|.+.+..+..
T Consensus       397 ~l~g~ell~ri~~~~~  412 (612)
T KOG0603|consen  397 LLDGGELLRRIRSKPE  412 (612)
T ss_pred             hccccHHHHHHHhcch
Confidence            9999998766554433

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.37  E-value=2.8e-08  Score=94.87  Aligned_cols=77  Identities=18%  Similarity=0.336  Sum_probs=59.3

Q ss_pred             cccccccccCccceEEEEe-CCCCEEEEEEee--cCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeC-----CeEEEE
Q 011696          370 ADQNLLGEGGFGSVYKGYL-PDGREVAIKQLK--IGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISD-----DRRLLI  441 (479)
Q Consensus       370 ~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~--~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~-----~~~~LV  441 (479)
                      .-++-||-|.||+||..+. .+|+.||+|++-  ..+....+.|.+|+++|+.++|.||+.++++..-.     +++|+|
T Consensus        56 ~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiYV~  135 (449)
T KOG0664|consen   56 QPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELYVL  135 (449)
T ss_pred             CCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHHHH
Confidence            4457899999999999875 579999999884  22334456899999999999999999999876432     244566


Q ss_pred             EecCC
Q 011696          442 YDYVP  446 (479)
Q Consensus       442 ~Ey~~  446 (479)
                      .|+|.
T Consensus       136 TELmQ  140 (449)
T KOG0664|consen  136 TELMQ  140 (449)
T ss_pred             HHHHH
Confidence            67664

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=98.36  E-value=2.2e-07  Score=104.11  Aligned_cols=108  Identities=19%  Similarity=0.292  Sum_probs=76.3

Q ss_pred             HhcCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCC---CCCccceEEEEEeCCeEEEE
Q 011696          365 ATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIH---HRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       365 ~~~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~---HpNIv~LlG~~~~~~~~~LV  441 (479)
                      ..+.|.+.+.||+|+||.||+|...+|+.||||.=+-...   .||.--.++|.||+   -..|+.+..+++..+.-+||
T Consensus       696 ~~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~---WEfYI~~q~~~RLk~~~~~~~~~~~~a~~~~~~S~lv  772 (974)
T KOG1166|consen  696 GGEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNP---WEFYICLQVMERLKPQMLPSIMHISSAHVFQNASVLV  772 (974)
T ss_pred             cceeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCCc---eeeeehHHHHHhhchhhhcchHHHHHHHccCCcceee
Confidence            3456788889999999999999988899999998653332   35666666777776   12344555556667888999


Q ss_pred             EecCCCCCHHHHHhcCCcccchhHHHHHHHHHHh
Q 011696          442 YDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILT  475 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~  475 (479)
                      +||...|+|.++++......+.+-.++.+-++.|
T Consensus       773 ~ey~~~Gtlld~~N~~~~m~e~lv~~~~~qml~i  806 (974)
T KOG1166|consen  773 SEYSPYGTLLDLINTNKVMDEYLVMFFSCQMLRI  806 (974)
T ss_pred             eeccccccHHHhhccCCCCCchhhhHHHHHHHHH
Confidence            9999999999988765444444444444444433

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=98.30  E-value=4.5e-06  Score=80.86  Aligned_cols=84  Identities=13%  Similarity=0.190  Sum_probs=63.3

Q ss_pred             ccccc-ccCccceEEEEeCCCCEEEEEEeecCCC-------------cchHhHHHHHHHHHhCCCCCc--cceEEEEEeC
Q 011696          372 QNLLG-EGGFGSVYKGYLPDGREVAIKQLKIGGG-------------QGEREFKAEVEIISRIHHRHL--VSLVGYCISD  435 (479)
Q Consensus       372 ~~~IG-~G~fG~Vykg~~~~g~~VAVK~l~~~~~-------------~~~~~f~~Ei~il~~l~HpNI--v~LlG~~~~~  435 (479)
                      ..+|| .|+.|+||+... +++.++||+++....             .....+.+|+++|.+|+|.||  .+.++++...
T Consensus        36 ~~~lg~~~g~gtv~~v~~-~~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~  114 (239)
T PRK01723         36 ARVVGSAKGRGTTWFVQT-PGVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVR  114 (239)
T ss_pred             CceeecCCCCccEEEEEe-CCceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeee
Confidence            46788 899999999988 577899998854221             122458899999999999885  7888886554


Q ss_pred             Ce----EEEEEecCCC-CCHHHHHhc
Q 011696          436 DR----RLLIYDYVPN-NTLYFHLHG  456 (479)
Q Consensus       436 ~~----~~LV~Ey~~~-GsL~~~L~~  456 (479)
                      ..    .+|||||+++ ++|.+++..
T Consensus       115 ~~~~~~~~lV~e~l~G~~~L~~~l~~  140 (239)
T PRK01723        115 HGLFYRADILIERIEGARDLVALLQE  140 (239)
T ss_pred             cCcceeeeEEEEecCCCCCHHHHHhc
Confidence            32    2499999997 688877654

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=98.27  E-value=3.3e-06  Score=85.42  Aligned_cols=108  Identities=18%  Similarity=0.200  Sum_probs=74.8

Q ss_pred             CccccccccccCccceEEEEeCCC--CEEEEEEeecCCCcchHhHHHHHHHHHhCCC----CCccceEEEE-EeCCeEEE
Q 011696          368 GFADQNLLGEGGFGSVYKGYLPDG--REVAIKQLKIGGGQGEREFKAEVEIISRIHH----RHLVSLVGYC-ISDDRRLL  440 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~~g--~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~H----pNIv~LlG~~-~~~~~~~L  440 (479)
                      +|...++||+|+||.||++...+.  +.+|+|............+..|+.+|..+.+    .++.+|++.. ..++..||
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~i   98 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNFI   98 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeEE
Confidence            688889999999999999986443  4788887765433333378889999999873    6888888888 47778899


Q ss_pred             EEecCCCCCHHHHHhcC--CcccchhHHHHHHHHHHhh
Q 011696          441 IYDYVPNNTLYFHLHGK--WQLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~--~~~~~~~~~~~~~l~~~~~  476 (479)
                      ||+.+ +.+|.++....  ..+......++.+..+.++
T Consensus        99 VM~l~-G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l  135 (322)
T KOG1164|consen   99 VMSLL-GPSLEDLRKRNPPGRFSRKTVLRIAIQNLNAL  135 (322)
T ss_pred             EEecc-CccHHHHHHhCCCCCcCHhHHHHHHHHHHHHH
Confidence            98855 55777655322  3344444444444444444

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=98.27  E-value=1.1e-06  Score=82.78  Aligned_cols=84  Identities=24%  Similarity=0.396  Sum_probs=65.0

Q ss_pred             HHHHHHHhcCccccccccccCccceEEEE-eCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCC-CCccceEEEEEeCC
Q 011696          359 YEELVKATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHH-RHLVSLVGYCISDD  436 (479)
Q Consensus       359 ~eel~~~~~~f~~~~~IG~G~fG~Vykg~-~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~H-pNIv~LlG~~~~~~  436 (479)
                      .+++..+ ++|...+.||.|+||.+|.|. +.+|+.||||.=...  ...-++..|.++.+.|+| -.|-.+..|..+.+
T Consensus         8 ~~~~iv~-gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~--a~hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~   84 (341)
T KOG1163|consen    8 LEELIVG-GKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSK--AKHPQLLYESKVYRILQGGVGIPHIRHYGTEKD   84 (341)
T ss_pred             hhhheec-cceEEEEeecCCchhheeeeeeccCCceEEEEeeccc--CCCcchhHHHHHHHHhccCCCCchhhhhccccc
Confidence            3444433 578888999999999999997 678999999974322  222368899999999976 56667777777888


Q ss_pred             eEEEEEecC
Q 011696          437 RRLLIYDYV  445 (479)
Q Consensus       437 ~~~LV~Ey~  445 (479)
                      ...||||++
T Consensus        85 ynvlVMdLL   93 (341)
T KOG1163|consen   85 YNVLVMDLL   93 (341)
T ss_pred             cceeeeecc
Confidence            889999976

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=98.26  E-value=1.7e-06  Score=91.05  Aligned_cols=84  Identities=21%  Similarity=0.258  Sum_probs=59.9

Q ss_pred             cccccccCccceEEEEeCCCCEEEEEEeecCCCc----------------------------------------chHhHH
Q 011696          372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ----------------------------------------GEREFK  411 (479)
Q Consensus       372 ~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~----------------------------------------~~~~f~  411 (479)
                      .+-||.|++|+||+|++.+|+.||||..+.+...                                        .+-+|.
T Consensus       122 ~~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~  201 (437)
T TIGR01982       122 EKPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLR  201 (437)
T ss_pred             CcceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHH
Confidence            3579999999999999999999999997533100                                        011366


Q ss_pred             HHHHHHHhC----CCCCccceEEEEEe-CCeEEEEEecCCCCCHHHHHh
Q 011696          412 AEVEIISRI----HHRHLVSLVGYCIS-DDRRLLIYDYVPNNTLYFHLH  455 (479)
Q Consensus       412 ~Ei~il~~l----~HpNIv~LlG~~~~-~~~~~LV~Ey~~~GsL~~~L~  455 (479)
                      +|++.+.++    +|.+-|.+-.+|++ ....+|||||++|++|.++++
T Consensus       202 ~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~  250 (437)
T TIGR01982       202 REAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAA  250 (437)
T ss_pred             HHHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHH
Confidence            677666655    34555555555543 345789999999999988765

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=98.26  E-value=2.3e-06  Score=91.71  Aligned_cols=85  Identities=16%  Similarity=0.159  Sum_probs=58.2

Q ss_pred             CccccccccccCccceEEEEeCC-CCEEEEEEeecCCC----------------------------------c------c
Q 011696          368 GFADQNLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGG----------------------------------Q------G  406 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~~-g~~VAVK~l~~~~~----------------------------------~------~  406 (479)
                      +|.. +-||+|++|+||+|++.+ |+.||||.++.+..                                  +      +
T Consensus       121 ~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l~~  199 (537)
T PRK04750        121 DFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTLHD  199 (537)
T ss_pred             hcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHH
Confidence            3554 679999999999999877 99999999863210                                  0      0


Q ss_pred             hHhHHHHHHHHHhC----CCCCccceEEEEEe-CCeEEEEEecCCCCCHHHH
Q 011696          407 EREFKAEVEIISRI----HHRHLVSLVGYCIS-DDRRLLIYDYVPNNTLYFH  453 (479)
Q Consensus       407 ~~~f~~Ei~il~~l----~HpNIv~LlG~~~~-~~~~~LV~Ey~~~GsL~~~  453 (479)
                      +-+|.+|+.-+.++    .|.+.|.+-.++++ ....+||||||.|+.|.++
T Consensus       200 ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~  251 (537)
T PRK04750        200 ELDLMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDV  251 (537)
T ss_pred             hhCHHHHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhH
Confidence            11355555555444    35555555555554 4467899999999999764

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=98.26  E-value=2e-06  Score=81.09  Aligned_cols=82  Identities=13%  Similarity=0.211  Sum_probs=64.6

Q ss_pred             ccccccCccceEEEEeCCCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCC--CccceEEEEEeCC---eEEEEEecCC
Q 011696          373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHR--HLVSLVGYCISDD---RRLLIYDYVP  446 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~Hp--NIv~LlG~~~~~~---~~~LV~Ey~~  446 (479)
                      +.|+.|.++.||+++..+|+.++||....... ....++.+|++++..|++.  ++.++++++.+.+   ..++||||++
T Consensus         4 ~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~i~   83 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVMERVD   83 (223)
T ss_pred             eecCCCccceEEEEEecCCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEEEeC
Confidence            56899999999999987778899998754332 2345799999999999764  4678888876643   5689999999


Q ss_pred             CCCHHHHH
Q 011696          447 NNTLYFHL  454 (479)
Q Consensus       447 ~GsL~~~L  454 (479)
                      +++|.+.+
T Consensus        84 G~~l~~~~   91 (223)
T cd05154          84 GRVLRDRL   91 (223)
T ss_pred             CEecCCCC
Confidence            99887654

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=98.15  E-value=1.9e-06  Score=79.64  Aligned_cols=79  Identities=19%  Similarity=0.350  Sum_probs=64.1

Q ss_pred             ccccccccccCccceEEEE-eCCCCEEEEEEeecC-CCcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEEEEecC
Q 011696          369 FADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIG-GGQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~-~~~g~~VAVK~l~~~-~~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      +...+.||+|+||.|-+-+ ..+|+..|||+++.. ..++.+++++|+++..+. ..+.+|.|+|...++...++-||.|
T Consensus        48 L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdvwIcME~M  127 (282)
T KOG0984|consen   48 LVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDVWICMELM  127 (282)
T ss_pred             hhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccEEEeHHHh
Confidence            3334679999999987765 358999999999743 345556899999888776 7899999999999999999999988


Q ss_pred             CC
Q 011696          446 PN  447 (479)
Q Consensus       446 ~~  447 (479)
                      ..
T Consensus       128 ~t  129 (282)
T KOG0984|consen  128 DT  129 (282)
T ss_pred             hh
Confidence            63

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=98.10  E-value=3.3e-06  Score=83.05  Aligned_cols=90  Identities=17%  Similarity=0.245  Sum_probs=64.0

Q ss_pred             cCccccccccccCccceEEEE-eCCCCEEEEEEeecCCCcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEEEEec
Q 011696          367 DGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~-~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      -+|..+++||+|.||++|.|+ +-+++.||||.=-.  ..+.-++..|.+..+-| ...+|-.++-|-.++..-.||+|+
T Consensus        28 ~hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPr--kS~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVidL  105 (449)
T KOG1165|consen   28 PHYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPR--KSEAPQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVIDL  105 (449)
T ss_pred             ccceeccccccCcceeeecccccccCceEEEEeccc--cCCcchHHHHHHHHHHHcCCCCCCceeeeccccchhhhhhhh
Confidence            357788999999999999997 56899999996422  12233566777777776 457787776666666677899998


Q ss_pred             CC--CCCHHHHHhcCC
Q 011696          445 VP--NNTLYFHLHGKW  458 (479)
Q Consensus       445 ~~--~GsL~~~L~~~~  458 (479)
                      +-  -.||+||..+++
T Consensus       106 LGPSLEDLFD~CgR~F  121 (449)
T KOG1165|consen  106 LGPSLEDLFDLCGRRF  121 (449)
T ss_pred             hCcCHHHHHHHhcCcc
Confidence            74  345566654443

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=98.10  E-value=2.3e-06  Score=85.41  Aligned_cols=91  Identities=20%  Similarity=0.300  Sum_probs=68.3

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCC------CccceEEEEEeCCeE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHR------HLVSLVGYCISDDRR  438 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~Hp------NIv~LlG~~~~~~~~  438 (479)
                      +++|....++|+|.||+|.++.. ..+..||||+++.-... .+.-+-||++|.+|++.      .+|.+.+++...+..
T Consensus        88 ~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~kY-reAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrghi  166 (415)
T KOG0671|consen   88 TNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNVDKY-REAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGHI  166 (415)
T ss_pred             ccceehhhhhcCCcccceEEEeecCCCceehHHHHHHHHHH-hhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCce
Confidence            56777888999999999999985 34678999998732211 23456799999999432      266777778888899


Q ss_pred             EEEEecCCCCCHHHHHhcCC
Q 011696          439 LLIYDYVPNNTLYFHLHGKW  458 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~~  458 (479)
                      |||+|.|. -+++++|..+.
T Consensus       167 CivfellG-~S~~dFlk~N~  185 (415)
T KOG0671|consen  167 CIVFELLG-LSTFDFLKENN  185 (415)
T ss_pred             EEEEeccC-hhHHHHhccCC
Confidence            99999773 37888887654

>cd05151 ChoK Choline Kinase (ChoK)

Probab=97.90  E-value=2.5e-05  Score=70.59  Aligned_cols=76  Identities=13%  Similarity=0.092  Sum_probs=56.8

Q ss_pred             ccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCcc-ceEEEEEeCCeEEEEEecCCCCCHH
Q 011696          373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLV-SLVGYCISDDRRLLIYDYVPNNTLY  451 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv-~LlG~~~~~~~~~LV~Ey~~~GsL~  451 (479)
                      +.|+.|.+++||+++. +|+.|+||....... ...++.+|+++|..+.+.+++ ++++++  .+..+|||||+++++|.
T Consensus         4 ~~l~~G~~~~vy~~~~-~~~~~~lK~~~~~~~-~~~~~~~E~~~l~~l~~~~~~P~~~~~~--~~~~~lv~e~i~G~~l~   79 (170)
T cd05151           4 SPLKGGMTNKNYRVEV-ANKKYVVRIPGNGTE-LLINRENEAENSKLAAEAGIGPKLYYFD--PETGVLITEFIEGSELL   79 (170)
T ss_pred             eecCCcccCceEEEEE-CCeEEEEEeCCCCcc-cccCHHHHHHHHHHHHHhCCCCceEEEe--CCCCeEEEEecCCCccc
Confidence            5689999999999987 577899998754322 234678999999999766655 555443  34458999999999886


Q ss_pred             H
Q 011696          452 F  452 (479)
Q Consensus       452 ~  452 (479)
                      +
T Consensus        80 ~   80 (170)
T cd05151          80 T   80 (170)
T ss_pred             c
Confidence            4

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=97.45  E-value=0.0004  Score=63.36  Aligned_cols=78  Identities=21%  Similarity=0.273  Sum_probs=57.1

Q ss_pred             cccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCCCHH
Q 011696          372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLY  451 (479)
Q Consensus       372 ~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~GsL~  451 (479)
                      .+.||+|++|.||+|.+ .|..||+|.-+..  .....|..|+++|..++--++..=+-++   +..++.|||+.|..|.
T Consensus        27 ~~~L~KG~~s~Vyl~~~-~~~~~a~Kvrr~d--s~r~~l~kEakiLeil~g~~~~p~vy~y---g~~~i~me~i~G~~L~  100 (201)
T COG2112          27 EKELAKGTTSVVYLGEW-RGGEVALKVRRRD--SPRRNLEKEAKILEILAGEGVTPEVYFY---GEDFIRMEYIDGRPLG  100 (201)
T ss_pred             hhhhhcccccEEEEeec-cCceEEEEEecCC--cchhhHHHHHHHHHHhhhcCCCceEEEe---chhhhhhhhhcCcchh
Confidence            46799999999999999 5568888875532  3345799999999998877766432222   2334559999998887


Q ss_pred             HHHh
Q 011696          452 FHLH  455 (479)
Q Consensus       452 ~~L~  455 (479)
                      ++..
T Consensus       101 ~~~~  104 (201)
T COG2112         101 KLEI  104 (201)
T ss_pred             hhhh
Confidence            6544

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=97.14  E-value=0.00014  Score=71.50  Aligned_cols=78  Identities=19%  Similarity=0.356  Sum_probs=55.8

Q ss_pred             ccccccccccCccceEEEEe-CCCCEEEEEEeec--CCCcchHhHHHHHHHHHhCCCCCccceEEEEEeC------CeEE
Q 011696          369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKI--GGGQGEREFKAEVEIISRIHHRHLVSLVGYCISD------DRRL  439 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~--~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~------~~~~  439 (479)
                      |....-+|.|.- .|..+.. -.++.||+|++..  ......+.-.+|..+|..++|.||++++.++.-.      .+.|
T Consensus        19 y~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e~y   97 (369)
T KOG0665|consen   19 YVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQEVY   97 (369)
T ss_pred             eeeecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHhHH
Confidence            444456777765 3443331 2478899998842  2344556788999999999999999999998633      3568


Q ss_pred             EEEecCCC
Q 011696          440 LIYDYVPN  447 (479)
Q Consensus       440 LV~Ey~~~  447 (479)
                      +|||||..
T Consensus        98 ~v~e~m~~  105 (369)
T KOG0665|consen   98 LVMELMDA  105 (369)
T ss_pred             HHHHhhhh
Confidence            99999963

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=97.03  E-value=0.00017  Score=78.83  Aligned_cols=107  Identities=21%  Similarity=0.222  Sum_probs=73.5

Q ss_pred             ccccccccCccceEEEEe-CCCCEEEEEEeecC--CCcchH----hHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          371 DQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIG--GGQGER----EFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       371 ~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~--~~~~~~----~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      ..+++|.|.||.|+.... ...+..+.|..+..  ....++    .+..|+.+-.+|+|.||+..+..+.+.+..+.+||
T Consensus       322 ~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~~~~~~mE  401 (601)
T KOG0590|consen  322 PGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEIDGILQSME  401 (601)
T ss_pred             ccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhcccchhhhh
Confidence            467899999997777653 33444444443311  222222    26678888889999999999888888887777799


Q ss_pred             cCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          444 YVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       444 y~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||++ ||+.++-....++......+++.++..|-|
T Consensus       402 ~~~~-Dlf~~~~~~~~~~~~e~~c~fKqL~~Gv~y  435 (601)
T KOG0590|consen  402 YCPY-DLFSLVMSNGKLTPLEADCFFKQLLRGVKY  435 (601)
T ss_pred             cccH-HHHHHHhcccccchhhhhHHHHHHHHHHHH
Confidence            9999 999988776455555555555555555444

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=97.03  E-value=0.0021  Score=60.29  Aligned_cols=82  Identities=28%  Similarity=0.490  Sum_probs=59.7

Q ss_pred             cCccccccccccCc-cceEEEEeCCCCEEEEEEeecCC---C------------------cchHhHHHHHHHHHhCC---
Q 011696          367 DGFADQNLLGEGGF-GSVYKGYLPDGREVAIKQLKIGG---G------------------QGEREFKAEVEIISRIH---  421 (479)
Q Consensus       367 ~~f~~~~~IG~G~f-G~Vykg~~~~g~~VAVK~l~~~~---~------------------~~~~~f~~Ei~il~~l~---  421 (479)
                      .+|...+.||.|.- |.|||.++ +|+.+|||.++...   .                  ....-|..|.+..++|+   
T Consensus        37 ~~I~flefLg~g~~~~~V~kv~I-~g~~YALKlf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~PF~~ECRAfgRLke~~  115 (207)
T PF13095_consen   37 DDIEFLEFLGHGSHDGYVFKVEI-DGRIYALKLFRFWDYTEPDYTRERFAGHETSLSTPAHYADPFNCECRAFGRLKEAG  115 (207)
T ss_pred             CcEeeeeecCCCCceeEEEEEEE-CCeEEEEEEeeccccCCCccccccccccccccchhhhhcChHHHHHHhhHHHHhcc
Confidence            56777899999999 99999999 88899999943211   0                  01124889999888874   


Q ss_pred             CCCc--cceEEEEEeCC------------------eEEEEEecCCCCC
Q 011696          422 HRHL--VSLVGYCISDD------------------RRLLIYDYVPNNT  449 (479)
Q Consensus       422 HpNI--v~LlG~~~~~~------------------~~~LV~Ey~~~Gs  449 (479)
                      +.++  |+.+||..-..                  .+.||.||+....
T Consensus       116 ~e~~~Avkc~Gyl~L~~~~q~~~~~~~~~~~~~~~~~aIVKD~v~~~~  163 (207)
T PF13095_consen  116 REGLWAVKCHGYLLLTEDQQFEQLRQRGSDHRPLPIRAIVKDFVPDDP  163 (207)
T ss_pred             ccCceEEEeeEEEEEchHHHHHHhhcccccCCCCccEEEEEeecCCcc
Confidence            4566  89999874331                  1357999988765

>PRK10593 hypothetical protein; Provisional

Probab=96.86  E-value=0.0044  Score=62.02  Aligned_cols=79  Identities=9%  Similarity=0.123  Sum_probs=58.9

Q ss_pred             ccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCC---CCccceEEEEEeC---CeEEEEE
Q 011696          369 FADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHH---RHLVSLVGYCISD---DRRLLIY  442 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~H---pNIv~LlG~~~~~---~~~~LV~  442 (479)
                      ....+.||+|..+.||+....+| .+.||..+.  ......|.+|.+.|+.|..   -.|-+++++|..+   +..+|||
T Consensus        16 ~~~~~~i~~G~~~~vy~~~~~~~-~~~~k~~~~--~~~~~~~~~Ea~~L~~L~~~~~vpVP~V~~~~~~~~~~g~~~LVm   92 (297)
T PRK10593         16 LSRVECISEQPYAALWALYDSQG-NPMPLMARS--FSTPGVAQQEAWKLSMLARSGTVRMPTVYGVMTHEQSPGPDVLLL   92 (297)
T ss_pred             hheeeecCCccceeEEEEEcCCC-CEEEEEecc--cccchHHHHHHHHHHHHccCCCCCcCcEEEEeccCCcCCCeEEEE
Confidence            44456799999999999887555 466676432  1123579999999999853   3678999998653   5579999


Q ss_pred             ecCCCCCH
Q 011696          443 DYVPNNTL  450 (479)
Q Consensus       443 Ey~~~GsL  450 (479)
                      ||++++++
T Consensus        93 E~i~G~~~  100 (297)
T PRK10593         93 ERLRGVSV  100 (297)
T ss_pred             eccCCEec
Confidence            99998765

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=96.81  E-value=0.0047  Score=64.78  Aligned_cols=74  Identities=27%  Similarity=0.372  Sum_probs=55.6

Q ss_pred             cceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEE----eCCeEEEEEecCCC-CCHHHHH
Q 011696          381 GSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCI----SDDRRLLIYDYVPN-NTLYFHL  454 (479)
Q Consensus       381 G~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~----~~~~~~LV~Ey~~~-GsL~~~L  454 (479)
                      -+.||++. .||..|++|+|+............-+++.+++.|.|||.|..++.    .+..++|||+|.++ ++|+++-
T Consensus       290 ~Ttyk~~s~~DG~~YvLkRlhg~r~~~~nk~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~TL~d~~  369 (655)
T KOG3741|consen  290 ITTYKATSNVDGNAYVLKRLHGDRDQSTNKDTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPTLYDLY  369 (655)
T ss_pred             ceeEeeeeccCCceeeeeeeccccccCcccchHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCCCchHHHHH
Confidence            45788873 589999999996444443334556678899999999999999887    34457899999985 6776654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=96.78  E-value=0.00023  Score=79.91  Aligned_cols=106  Identities=19%  Similarity=0.194  Sum_probs=74.2

Q ss_pred             CccccccccccCccceEEEEeCCCCEEEEEEeecCC-CcchHhHHHHHHH--HHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          368 GFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGG-GQGEREFKAEVEI--ISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~-~~~~~~f~~Ei~i--l~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      +|...+.||+++|-+|.||+.++|. |+||.+...+ ....+.|.++++-  ..-++|+|++.+.-+-..+...|||-+|
T Consensus        24 e~~~~~~LGstRFlKv~r~k~~eG~-vVvKVFvk~~p~~sL~~~~qrL~~ik~~l~~~pn~lPfqk~~~t~kAAylvRqy  102 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFLKVARAKDREGL-VVVKVFVKQDPTISLRPFKQRLEEIKFALMKAPNCLPFQKVLVTDKAAYLVRQY  102 (1431)
T ss_pred             ceeeecccCchhhhhhhhccCCCce-EEEEEEeccCCCCCchHHHHHHHHHHHHhhcCCcccchHHHHHhhHHHHHHHHH
Confidence            5667788999999999999987887 8999885443 4455556554433  4456999999988776667777888888


Q ss_pred             CCCCCHHHHHhcCCcccchhHHHHHHHHHHhh
Q 011696          445 VPNNTLYFHLHGKWQLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       445 ~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~  476 (479)
                      +.+ +|+|.|..|- +-.++++++...+|+.+
T Consensus       103 vkh-nLyDRlSTRP-FL~~iEKkWiaFQLL~a  132 (1431)
T KOG1240|consen  103 VKH-NLYDRLSTRP-FLVLIEKKWIAFQLLKA  132 (1431)
T ss_pred             Hhh-hhhhhhccch-HHHHHHHHHHHHHHHHH
Confidence            876 6888776543 22344555554444443

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=96.76  E-value=0.0028  Score=67.83  Aligned_cols=82  Identities=18%  Similarity=0.224  Sum_probs=57.5

Q ss_pred             ccccccCccceEEEEeCCCCEEEEEEeecCCC--------------------------c--------------chHhHHH
Q 011696          373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGG--------------------------Q--------------GEREFKA  412 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~--------------------------~--------------~~~~f~~  412 (479)
                      +-|+.++.|+||+|++.+|+.||||+.+-+-.                          .              .+-+|.+
T Consensus       131 ~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~ElDy~~  210 (517)
T COG0661         131 EPIASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREELDYRR  210 (517)
T ss_pred             CchhhhhHhhheeEEecCCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHHhCHHH
Confidence            56899999999999999999999998642110                          0              0113455


Q ss_pred             HHHHHHhC----CCCCccceEEEEEe-CCeEEEEEecCCCCCHHHHH
Q 011696          413 EVEIISRI----HHRHLVSLVGYCIS-DDRRLLIYDYVPNNTLYFHL  454 (479)
Q Consensus       413 Ei~il~~l----~HpNIv~LlG~~~~-~~~~~LV~Ey~~~GsL~~~L  454 (479)
                      |..-+.++    ++..-|++=.+||+ .....|+|||+.|-.|.++.
T Consensus       211 EA~n~~~~~~nf~~~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~  257 (517)
T COG0661         211 EAANAERFRENFKDDPDVYVPKVYWEYTTRRVLTMEWIDGIKISDIA  257 (517)
T ss_pred             HHHHHHHHHHHcCCCCCeEeceeehhccCCcEEEEEeeCCEecccHH
Confidence            66555443    44555566667765 45678999999999887764

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=96.72  E-value=0.00042  Score=73.72  Aligned_cols=85  Identities=27%  Similarity=0.362  Sum_probs=65.3

Q ss_pred             cccccCccceEEEE----eCCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCC-CCCccceEEEEEeCCeEEEEEecCC
Q 011696          374 LLGEGGFGSVYKGY----LPDGREVAIKQLKIGGG--QGEREFKAEVEIISRIH-HRHLVSLVGYCISDDRRLLIYDYVP  446 (479)
Q Consensus       374 ~IG~G~fG~Vykg~----~~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~-HpNIv~LlG~~~~~~~~~LV~Ey~~  446 (479)
                      ++|+|.||.|++..    .+.|..+|+|.++....  ........|..++..++ |+.+|+|.-++..+...+++++|..
T Consensus         1 vlg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~~r   80 (612)
T KOG0603|consen    1 VLGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDFLR   80 (612)
T ss_pred             CCCcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhccCCCceeeeeeeeccccchhHhhhhcc
Confidence            47999999998653    23467788888864332  11125667788899986 9999999888888889999999999


Q ss_pred             CCCHHHHHhcCC
Q 011696          447 NNTLYFHLHGKW  458 (479)
Q Consensus       447 ~GsL~~~L~~~~  458 (479)
                      +|+|+..+....
T Consensus        81 gg~lft~l~~~~   92 (612)
T KOG0603|consen   81 GGDLFTRLSKEV   92 (612)
T ss_pred             cchhhhccccCC
Confidence            999987776543

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=96.72  E-value=0.0057  Score=58.66  Aligned_cols=73  Identities=19%  Similarity=0.249  Sum_probs=55.5

Q ss_pred             cccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCc--cceEEEEEeCCeEEEEEecCCCCC
Q 011696          372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHL--VSLVGYCISDDRRLLIYDYVPNNT  449 (479)
Q Consensus       372 ~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNI--v~LlG~~~~~~~~~LV~Ey~~~Gs  449 (479)
                      ...||+|..+.||+.   .|+.+++|......  ...+..+|.++|..+..-+|  -+.++++...+...+||||+.|.+
T Consensus         6 ~~~i~~G~t~~~y~~---~~~~~VlR~~~~~~--~~~~i~~E~~~l~~l~~~glpvP~~~~~~~~~~~~glv~e~i~G~~   80 (226)
T TIGR02172         6 WTQTGEGGNGESYTH---KTGKWMLKLYNPGF--DKETIKREFDASRKVFSLGIPTPHPFDLVEDGGRLGLIYELIVGKR   80 (226)
T ss_pred             heeecCCCCcceeEe---cCCCEEEEeCCCCC--CHHHHHHHHHHHHHHHHcCCCCCceEEEEecCCeeeeeeeecCCcc
Confidence            367899999999984   24456778765322  33467899999999865544  688888877788889999999974

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=96.70  E-value=0.0084  Score=56.18  Aligned_cols=74  Identities=15%  Similarity=0.234  Sum_probs=51.1

Q ss_pred             ccccccCccceEEEEeCC-------CCEEEEEEeecCCCc---------------------c-hHhHH----HHHHHHHh
Q 011696          373 NLLGEGGFGSVYKGYLPD-------GREVAIKQLKIGGGQ---------------------G-EREFK----AEVEIISR  419 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~~-------g~~VAVK~l~~~~~~---------------------~-~~~f~----~Ei~il~~  419 (479)
                      .+||.|.=+.||.|.-.+       +..||||..+.....                     + .+.+.    +|++.|.+
T Consensus         3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~r   82 (197)
T cd05146           3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKR   82 (197)
T ss_pred             CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHH
Confidence            568999999999997543       478999976432100                     0 11223    79999999


Q ss_pred             CCC--CCccceEEEEEeCCeEEEEEecCCCCCH
Q 011696          420 IHH--RHLVSLVGYCISDDRRLLIYDYVPNNTL  450 (479)
Q Consensus       420 l~H--pNIv~LlG~~~~~~~~~LV~Ey~~~GsL  450 (479)
                      |+.  -++-+++++    ...+|||||+.++.|
T Consensus        83 l~~~Gv~vP~pi~~----~~~~lvME~Ig~~~~  111 (197)
T cd05146          83 MQKAGIPCPEVVVL----KKHVLVMSFIGDDQV  111 (197)
T ss_pred             HHHcCCCCCeEEEe----cCCEEEEEEcCCCCc
Confidence            854  456667654    566899999987644

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=96.66  E-value=0.0019  Score=68.16  Aligned_cols=54  Identities=15%  Similarity=0.286  Sum_probs=44.8

Q ss_pred             HHhCCCCCccceEEEEEeCCeEEEEEecCCCCCHHHHHhcCCcccchhHHHHHHH
Q 011696          417 ISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGL  471 (479)
Q Consensus       417 l~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l  471 (479)
                      |+.+.|.||.+|+|.|+++...++|.+||..|+|+|.|.. ..+.+||..+...+
T Consensus         1 l~~l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~-~~~~~d~~F~~s~~   54 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILSN-EDIKLDYFFILSFI   54 (484)
T ss_pred             CcccchhhhhhheeeEecCCceEEEEeeecCccHHhHHhc-cccCccHHHHHHHH
Confidence            4678999999999999999999999999999999999986 34456666555443

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=96.59  E-value=0.0056  Score=65.51  Aligned_cols=103  Identities=18%  Similarity=0.205  Sum_probs=63.8

Q ss_pred             cccccccCccceEEEEeCCCCEEEEEEeecCCCc-------------------------------------chHhHHHHH
Q 011696          372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ-------------------------------------GEREFKAEV  414 (479)
Q Consensus       372 ~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~-------------------------------------~~~~f~~Ei  414 (479)
                      .+-||.-.+|+||++++.+|+.||||+-+-+-..                                     .+-+|.+|.
T Consensus       166 ~~piaaASlaQVhrA~L~~G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L~~ELDF~~EA  245 (538)
T KOG1235|consen  166 EEPIAAASLAQVHRARLKNGEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSLPQELDFTKEA  245 (538)
T ss_pred             cchhhhcchhheEEEEecCCCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhhHhhcchHHHH
Confidence            3569999999999999999999999974321100                                     011356665


Q ss_pred             H----HHHhCCCCCc---cceEEEEEeC-CeEEEEEecCCCCCHHH--HHhcCCcccchhHHHHHHHHHH
Q 011696          415 E----IISRIHHRHL---VSLVGYCISD-DRRLLIYDYVPNNTLYF--HLHGKWQLGFDIRNHNNGLLIL  474 (479)
Q Consensus       415 ~----il~~l~HpNI---v~LlG~~~~~-~~~~LV~Ey~~~GsL~~--~L~~~~~~~~~~~~~~~~l~~~  474 (479)
                      +    +.+.++|-++   |.+=.++++- ..+.|+||||.|.-+.|  +|........++-+++..+...
T Consensus       246 ~Nae~~~~~f~~~~~~~~V~VP~Vy~~~st~RVLtME~~~G~~i~Dl~~i~~~gi~~~~i~~~l~~~~~~  315 (538)
T KOG1235|consen  246 KNAERFRENFKDFSLLTYVLVPKVYWDLSTKRVLTMEYVDGIKINDLDAIDKRGISPHDILNKLVEAYLE  315 (538)
T ss_pred             HhHHHHHHHHHhcccccceeCCeehhhcCcceEEEEEecCCccCCCHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            4    3334566662   2244455543 46789999999988854  4444444444555544444433

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=96.53  E-value=0.002  Score=56.73  Aligned_cols=7  Identities=57%  Similarity=1.412  Sum_probs=2.6

Q ss_pred             hhhhhcc
Q 011696          291 CLRRRKK  297 (479)
Q Consensus       291 ~~~rrkk  297 (479)
                      |+|+||+
T Consensus        74 c~r~kkt   80 (154)
T PF04478_consen   74 CIRRKKT   80 (154)
T ss_pred             EEecccC
Confidence            3333333

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=96.40  E-value=0.0024  Score=54.63  Aligned_cols=19  Identities=32%  Similarity=0.670  Sum_probs=9.5

Q ss_pred             HHHHHHHHHhhhhhhhccc
Q 011696          280 IAFSLIGLVVWCLRRRKKE  298 (479)
Q Consensus       280 v~~~ll~l~~~~~~rrkk~  298 (479)
                      .++++|+|++||+||+||+
T Consensus        76 GvIg~Illi~y~irR~~Kk   94 (122)
T PF01102_consen   76 GVIGIILLISYCIRRLRKK   94 (122)
T ss_dssp             HHHHHHHHHHHHHHHHS--
T ss_pred             HHHHHHHHHHHHHHHHhcc
Confidence            3344455566666666555

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=96.33  E-value=0.0016  Score=43.97  Aligned_cols=25  Identities=12%  Similarity=0.123  Sum_probs=9.4

Q ss_pred             ehhhHHHHHHHHHHHHHHhhhhhhh
Q 011696          271 VVIAVAVGIIAFSLIGLVVWCLRRR  295 (479)
Q Consensus       271 i~i~v~~~iv~~~ll~l~~~~~~rr  295 (479)
                      +++++++-++++++++++++++|||
T Consensus        13 Ia~~VvVPV~vI~~vl~~~l~~~~r   37 (40)
T PF08693_consen   13 IAVGVVVPVGVIIIVLGAFLFFWYR   37 (40)
T ss_pred             EEEEEEechHHHHHHHHHHhheEEe
Confidence            3344443333333333333443333

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=96.19  E-value=0.012  Score=55.36  Aligned_cols=77  Identities=17%  Similarity=0.280  Sum_probs=57.8

Q ss_pred             ccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCC--ccceEEEEEeC---CeEEEEEecCCC
Q 011696          373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRH--LVSLVGYCISD---DRRLLIYDYVPN  447 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpN--Iv~LlG~~~~~---~~~~LV~Ey~~~  447 (479)
                      +.|+.|..+.||+....+ +.++||.....  ...+++.+|+.++..|+..+  +-++++++...   ...+++|||+.+
T Consensus         3 ~~l~~G~~n~~~~v~~~~-~~~vlK~~~~~--~~~~~~~~e~~~~~~l~~~~~pvP~~~~~~~~~~~~~~~~~~~~~i~g   79 (239)
T PF01636_consen    3 RPLSGGFSNRVYRVTTDD-GRYVLKFYRPP--DAAERLRREAAVLRQLAEHGIPVPRVLAFDTSDEFNGFPYLLMEYIPG   79 (239)
T ss_dssp             EEEEESSSSEEEEEEETT-SEEEEEEESSH--HHHHHHHHHHHHHHHHHHTTSBS--EEEEEEETEETSEEEEEEEEESS
T ss_pred             ccCCCCCeeeEEEEEECC-cEEEEEEeCCC--CCHHHHHHHHHHHHHHHhcCCCCceEEeecccccccccceEEEEEecc
Confidence            568999999999999866 68999986533  34567889999998885443  56888866443   346899999999


Q ss_pred             CCHHH
Q 011696          448 NTLYF  452 (479)
Q Consensus       448 GsL~~  452 (479)
                      ..|..
T Consensus        80 ~~~~~   84 (239)
T PF01636_consen   80 RPLDD   84 (239)
T ss_dssp             EEHHH
T ss_pred             ccccc
Confidence            98877

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>PLN02876 acyl-CoA dehydrogenase

Probab=96.17  E-value=0.016  Score=66.19  Aligned_cols=79  Identities=13%  Similarity=0.299  Sum_probs=57.9

Q ss_pred             cccccccCccceEEEEeCCC---CEEEEEEeecCCC-cchHhHHHHHHHHHhCC-CCCc--cceEEEEEeC---CeEEEE
Q 011696          372 QNLLGEGGFGSVYKGYLPDG---REVAIKQLKIGGG-QGEREFKAEVEIISRIH-HRHL--VSLVGYCISD---DRRLLI  441 (479)
Q Consensus       372 ~~~IG~G~fG~Vykg~~~~g---~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~-HpNI--v~LlG~~~~~---~~~~LV  441 (479)
                      .+.|+.|.++.+|+-.+.++   +.+++|+...... .....+.+|+++|+.|. |.+|  .+++++|.+.   +..|||
T Consensus        43 v~~l~gG~sn~ty~l~~~~~~~~~~~VLR~~p~~~~~~~~~~~~rE~~~l~~L~~~~~vpVP~v~~~~~d~~v~G~~flV  122 (822)
T PLN02876         43 VSQFGHGQSNPTFLLEVGNGGSVKRYVLRKKPPGKLLQSAHAVEREYQVLRALGEHTDVPVPKVYCLCTDASVIGTAFYI  122 (822)
T ss_pred             EEEeCCCCcCceEEEEECCCCcceeEEEEeCCCCccCccHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCCcCCCceEE
Confidence            45689999999999877554   3566776533221 23457999999999995 7665  7889998764   356899


Q ss_pred             EecCCCCCH
Q 011696          442 YDYVPNNTL  450 (479)
Q Consensus       442 ~Ey~~~GsL  450 (479)
                      |||+++..+
T Consensus       123 ME~v~G~~~  131 (822)
T PLN02876        123 MEYLEGRIF  131 (822)
T ss_pred             EEecCCccc
Confidence            999998654

>PTZ00382 Variant-specific surface protein (VSP); Provisional

Probab=96.13  E-value=0.0031  Score=51.95  Aligned_cols=34  Identities=29%  Similarity=0.502  Sum_probs=15.1

Q ss_pred             CCCCccceehhhHHHHHHHHHHHHHHhhhhhhhc
Q 011696          263 NGIGTAGTVVIAVAVGIIAFSLIGLVVWCLRRRK  296 (479)
Q Consensus       263 ~g~~~~~~i~i~v~~~iv~~~ll~l~~~~~~rrk  296 (479)
                      ++++++.++.|++++++++.+|+++++|++++||
T Consensus        61 ~~ls~gaiagi~vg~~~~v~~lv~~l~w~f~~r~   94 (96)
T PTZ00382         61 SGLSTGAIAGISVAVVAVVGGLVGFLCWWFVCRG   94 (96)
T ss_pred             CCcccccEEEEEeehhhHHHHHHHHHhheeEEee
Confidence            4455544444444333333344444444444443

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=96.07  E-value=0.052  Score=56.45  Aligned_cols=80  Identities=15%  Similarity=0.217  Sum_probs=56.2

Q ss_pred             ccccccCccceEEEEeCCC-CEEEEEEee----cC-C--CcchHhHHHHHHHHHhC---CCCCccceEEEEEeCCeEEEE
Q 011696          373 NLLGEGGFGSVYKGYLPDG-REVAIKQLK----IG-G--GQGEREFKAEVEIISRI---HHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~~g-~~VAVK~l~----~~-~--~~~~~~f~~Ei~il~~l---~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      +.||.|.++.||+....+| +.|.||+-.    .. .  ....+.+..|.+.|..+   ...++-+++++  +.+..+||
T Consensus        32 ~elggGn~N~VyrV~~~~g~~svIVKqa~p~~r~~g~~wpl~~eR~~~Eae~L~~l~~~~p~~VPkV~~~--D~~~~~lV  109 (401)
T PRK09550         32 REIGDGNLNLVFRVSDTEGGKSVIVKQALPYVRVVGESWPLTLDRARIEAEALKIQAKYVPDLVPKVYHY--DEELAVTV  109 (401)
T ss_pred             eEcCCCceEEEEEEEeCCCCeEEEEEecCcccccccccccccHHHHHHHHHHHHHHHhhCCCCCCeEEEE--CCCCCEEE
Confidence            5689999999999998777 489999742    11 1  12345677788888876   23457777777  45667899


Q ss_pred             EecCCCCC-HHHHH
Q 011696          442 YDYVPNNT-LYFHL  454 (479)
Q Consensus       442 ~Ey~~~Gs-L~~~L  454 (479)
                      |||+.+.. |++.|
T Consensus       110 ME~L~~~~~lr~~L  123 (401)
T PRK09550        110 MEDLSDHKILRKGL  123 (401)
T ss_pred             EecCCCccHHHHHH
Confidence            99999755 44443

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=96.06  E-value=0.035  Score=51.28  Aligned_cols=84  Identities=15%  Similarity=0.237  Sum_probs=60.2

Q ss_pred             ccccccCccceEEEEeCCCCEEEEEEeecCC--C--cc----hHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGG--G--QG----EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~--~--~~----~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      .+|++|+=..+|.+.+ -|..+.+|.-....  .  .+    .+...+|+++|.+++.-.|-.=+=+..+.+...|+|||
T Consensus         2 ~~i~~GAEa~i~~~~~-~g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~~I~me~   80 (204)
T COG3642           2 DLIKQGAEAIIYLTDF-LGLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPDNGLIVMEY   80 (204)
T ss_pred             chhhCCcceeEEeeec-cCcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCEEEEEE
Confidence            4578999999999977 34446666432111  1  11    23478899999998766666555566678888999999


Q ss_pred             CCCCCHHHHHhcC
Q 011696          445 VPNNTLYFHLHGK  457 (479)
Q Consensus       445 ~~~GsL~~~L~~~  457 (479)
                      +++-.|.++|...
T Consensus        81 I~G~~lkd~l~~~   93 (204)
T COG3642          81 IEGELLKDALEEA   93 (204)
T ss_pred             eCChhHHHHHHhc
Confidence            9999999887654

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=96.02  E-value=0.014  Score=62.99  Aligned_cols=66  Identities=20%  Similarity=0.221  Sum_probs=51.9

Q ss_pred             eCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCCCHHHHHh
Q 011696          388 LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLH  455 (479)
Q Consensus       388 ~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~GsL~~~L~  455 (479)
                      ..++..|.|+..+.......+...+.++.|+.|||+||++++.....+...|||.|-+.=  |..+|.
T Consensus        34 k~~~~~vsVF~~~~~~~~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~~~ylvTErV~P--l~~~lk   99 (690)
T KOG1243|consen   34 KADGGPVSVFVYKRSNGEVTELAKRAVKRLKTLRHPNILSYLDTTEEEGTLYLVTERVRP--LETVLK   99 (690)
T ss_pred             eccCCceEEEEEeCCCchhhHHHHHHHHHhhhccCchhhhhhhhhcccCceEEEeecccc--HHHHHH
Confidence            457888999988765553334577888999999999999999999999999999997753  344444

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=96.01  E-value=0.054  Score=50.87  Aligned_cols=85  Identities=18%  Similarity=0.296  Sum_probs=61.0

Q ss_pred             cccccccccCccceEEEEeCCCCEEEEEEeecCC----------------CcchHhHHHHHHHHHhCC------CCCccc
Q 011696          370 ADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGG----------------GQGEREFKAEVEIISRIH------HRHLVS  427 (479)
Q Consensus       370 ~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~----------------~~~~~~f~~Ei~il~~l~------HpNIv~  427 (479)
                      .....||+|+.-.||.--  +.....||.++...                ....+++++|++-...+.      +.+|.+
T Consensus         4 ~~~~~i~~G~~R~cy~HP--~dp~~cIKV~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~E~~~y~~l~~~~~~~~~~i~r   81 (199)
T PF10707_consen    4 SESDLIAQGGERDCYQHP--DDPNLCIKVMRPDRGERRRPFKRWLKRLRPKSRYRQNRRELRYYKQLSLRRGVDWSHIPR   81 (199)
T ss_pred             CCCcccccCCCceEEECC--CCCCeEEEEEccccccccccchhHHHhhcccchhHHHHHHHHHHHHHhhccCCccccccc
Confidence            345789999999999753  34456777775433                122456777777666665      899999


Q ss_pred             eEEEEEeCCeEEEEEecCCC--C----CHHHHHhc
Q 011696          428 LVGYCISDDRRLLIYDYVPN--N----TLYFHLHG  456 (479)
Q Consensus       428 LlG~~~~~~~~~LV~Ey~~~--G----sL~~~L~~  456 (479)
                      ++|+..++...-+|+|.+.+  |    +|.+++..
T Consensus        82 ~~G~veT~~G~Glv~e~I~d~dG~~s~TL~~~l~~  116 (199)
T PF10707_consen   82 FYGFVETNLGLGLVVELIRDADGNISPTLEDYLKE  116 (199)
T ss_pred             EeEEEecCCceEEEEEEEECCCCCcCccHHHHHHc
Confidence            99999999999999998754  3    35677743

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []

Probab=95.90  E-value=0.0035  Score=53.86  Aligned_cols=45  Identities=31%  Similarity=0.480  Sum_probs=34.9

Q ss_pred             cccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHh
Q 011696          372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISR  419 (479)
Q Consensus       372 ~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~  419 (479)
                      .+-||.|+.|+||+|++.+|+.||||..+-+   -.+.|..++++|+.
T Consensus        16 ~~PlasASiaQVh~a~l~~g~~VaVKV~rP~---i~~~i~~Dl~~l~~   60 (119)
T PF03109_consen   16 PEPLASASIAQVHRARLKDGEEVAVKVQRPG---IEEQIEADLRILRR   60 (119)
T ss_pred             cchhhheehhhheeeeecccchhhhhhcchH---HHHHHHHHHHHHHH
Confidence            3679999999999999999999999988642   23346666666654

These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=95.90  E-value=0.029  Score=54.01  Aligned_cols=75  Identities=20%  Similarity=0.215  Sum_probs=53.9

Q ss_pred             ccccCc-cceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCC-CCCccceEEEEEeCCeEEEEEecCCCCCHHH
Q 011696          375 LGEGGF-GSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIH-HRHLVSLVGYCISDDRRLLIYDYVPNNTLYF  452 (479)
Q Consensus       375 IG~G~f-G~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~-HpNIv~LlG~~~~~~~~~LV~Ey~~~GsL~~  452 (479)
                      |-.|.+ ..||+... +++.+.||......   ..++.+|+++|+.+. |--+-++++++..++..+|||||++|..|..
T Consensus         6 ~~~g~~~~~v~~~~~-~~~~~~vk~~~~~~---~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~G~~l~~   81 (244)
T cd05150           6 VTEGQSGATVYRLDG-KNPGLYLKIAPSGP---TYELEREAERLRWLAGKLPVPEVIDYGSDDGRAWLLTSAVPGVPAAA   81 (244)
T ss_pred             cCCCCCcCeEEEEcC-CCCcEEEEecCCCc---ccchHHHHHHHHHHHhcCCCCeEEEEEecCCccEEEEEeeCCccHhH
Confidence            444555 67899876 44678888765322   346788999998883 4445588888876667899999999988764


Q ss_pred             H
Q 011696          453 H  453 (479)
Q Consensus       453 ~  453 (479)
                      .
T Consensus        82 ~   82 (244)
T cd05150          82 L   82 (244)
T ss_pred             h
Confidence            3

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=95.83  E-value=0.099  Score=51.49  Aligned_cols=82  Identities=15%  Similarity=0.036  Sum_probs=54.9

Q ss_pred             ccccccCccceEEEEeCCCCEEEEEEeecCCCcc-h----------HhHHHHHHHHHhCCCCC--ccceEEEEEe-----
Q 011696          373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQG-E----------REFKAEVEIISRIHHRH--LVSLVGYCIS-----  434 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~-~----------~~f~~Ei~il~~l~HpN--Iv~LlG~~~~-----  434 (479)
                      +++-+.....|++.++ +|+.|.||+.......+ .          ..+.+|.+.+.+|..-+  +..++++.+.     
T Consensus        28 e~v~~~~~rrvvr~~~-~g~~~~vKr~~~~~~~~~~k~l~~~~~p~~~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~~~  106 (268)
T PRK15123         28 EVFRELEGRRTLRFEL-AGKSYFLKWHRGTGWGEIFKNLLSLRMPVLGADREWRAIHRLHEVGVDTMTGVAFGERGSNPA  106 (268)
T ss_pred             cEEecCCCceEEEEEE-CCEEEEEEEecCCcHHHHhhhhcccccccHHHHHHHHHHHHHHHcCCCCCCeeEEEEecCCCc
Confidence            4444444456778777 78889999774332111 1          14889999999985444  4466777654     


Q ss_pred             CCeEEEEEecCCCC-CHHHHHh
Q 011696          435 DDRRLLIYDYVPNN-TLYFHLH  455 (479)
Q Consensus       435 ~~~~~LV~Ey~~~G-sL~~~L~  455 (479)
                      ....+||+||+.+- +|.+++.
T Consensus       107 ~~~s~LVte~l~~~~sL~~~~~  128 (268)
T PRK15123        107 TRTSFIITEDLAPTISLEDYCA  128 (268)
T ss_pred             cceeEEEEeeCCCCccHHHHHH
Confidence            23468999999986 7888774

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=95.80  E-value=0.026  Score=52.10  Aligned_cols=84  Identities=13%  Similarity=0.138  Sum_probs=61.0

Q ss_pred             ccccccccCccceEEEEeCCCCEEEEEEee--cCC------CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          371 DQNLLGEGGFGSVYKGYLPDGREVAIKQLK--IGG------GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       371 ~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~--~~~------~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ...+|-+|+-+.|++|.+ .|+.+.||.--  ...      ....+...+|+++|.+++--.|..-.=++.+....+|+|
T Consensus        11 ~l~likQGAEArv~~~~~-~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~~~i~M   89 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSF-SGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYGGQIYM   89 (229)
T ss_pred             cceeeeccceeeEeeecc-CCceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCeEEE
Confidence            446788999999999998 78887787542  111      112346889999999987666666566677788889999


Q ss_pred             ecCCC-CCHHHHHh
Q 011696          443 DYVPN-NTLYFHLH  455 (479)
Q Consensus       443 Ey~~~-GsL~~~L~  455 (479)
                      ||+.+ -++.+++.
T Consensus        90 E~~~g~~~vk~~i~  103 (229)
T KOG3087|consen   90 EFIDGASTVKDFIL  103 (229)
T ss_pred             EeccchhHHHHHHH
Confidence            99977 35555554

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.66  E-value=0.01  Score=63.01  Aligned_cols=89  Identities=16%  Similarity=0.097  Sum_probs=67.6

Q ss_pred             hcCccccccccccCccceEEEEeC--CCCEEEEEEeecCCCcchHh--HHHHHHHHHhC-CCCCccceEEEEEeCCeEEE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLP--DGREVAIKQLKIGGGQGERE--FKAEVEIISRI-HHRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~--~g~~VAVK~l~~~~~~~~~~--f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~L  440 (479)
                      ..+|.....||.|.|+.||+..++  ++..+++|.+.........+  =+.|+.+...+ .|.++++....+...+..||
T Consensus       264 ~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r~~~i  343 (524)
T KOG0601|consen  264 LTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQLRQGYI  343 (524)
T ss_pred             cCCcceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCCCccccccccC
Confidence            345777788999999999998753  56789999886544333222  35677777776 68999998888888888899


Q ss_pred             EEecCCCCCHHHHH
Q 011696          441 IYDYVPNNTLYFHL  454 (479)
Q Consensus       441 V~Ey~~~GsL~~~L  454 (479)
                      -.|||++|++...+
T Consensus       344 p~e~~~~~s~~l~~  357 (524)
T KOG0601|consen  344 PLEFCEGGSSSLRS  357 (524)
T ss_pred             chhhhcCcchhhhh
Confidence            99999999986543

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=95.25  E-value=0.042  Score=54.49  Aligned_cols=55  Identities=22%  Similarity=0.339  Sum_probs=40.2

Q ss_pred             CccccccccccCccceEEEEeC-CCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCC
Q 011696          368 GFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHH  422 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~H  422 (479)
                      .+..++.||.|+|+.||+++.. .|+.+|||.+....   ..+.++|.+|...+..+.+
T Consensus        13 ~l~~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~   71 (288)
T PF14531_consen   13 TLVRGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPG   71 (288)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT
T ss_pred             EEEEccccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhcc
Confidence            3556789999999999999974 48899999885433   2344578888766665433

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=94.93  E-value=0.12  Score=48.19  Aligned_cols=70  Identities=24%  Similarity=0.369  Sum_probs=42.6

Q ss_pred             ceEEEEeCCCCEEEEEEeecCCCc---------------------c-----hHhHHHHHHHHHhCCCC--CccceEEEEE
Q 011696          382 SVYKGYLPDGREVAIKQLKIGGGQ---------------------G-----EREFKAEVEIISRIHHR--HLVSLVGYCI  433 (479)
Q Consensus       382 ~Vykg~~~~g~~VAVK~l~~~~~~---------------------~-----~~~f~~Ei~il~~l~Hp--NIv~LlG~~~  433 (479)
                      .||.|...+|+.||||..+.....                     .     .....+|++.|.+++.-  ++-+++++  
T Consensus         1 ~Vy~~~~~~~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~Gv~vP~p~~~--   78 (188)
T PF01163_consen    1 DVYHAIDPDGEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAGVPVPKPYDY--   78 (188)
T ss_dssp             EEEEEEECTTEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-SS--EEEE--
T ss_pred             CEEEEECCCCCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCCccCCcEEEE--
Confidence            389999888999999976432100                     0     11256899999999776  45566544  


Q ss_pred             eCCeEEEEEecCC--CCCHHHHHh
Q 011696          434 SDDRRLLIYDYVP--NNTLYFHLH  455 (479)
Q Consensus       434 ~~~~~~LV~Ey~~--~GsL~~~L~  455 (479)
                        +..+|||||+.  +..|..+.+
T Consensus        79 --~~~~ivME~I~~~G~~~~~l~~  100 (188)
T PF01163_consen   79 --NRNVIVMEYIGEDGVPLPRLKD  100 (188)
T ss_dssp             --ETTEEEEE--EETTEEGGCHHH
T ss_pred             --eCCEEEEEecCCCccchhhHHh
Confidence              24479999999  545544333

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=94.85  E-value=0.084  Score=50.36  Aligned_cols=73  Identities=16%  Similarity=0.116  Sum_probs=48.6

Q ss_pred             ccccccCccceEEEEeCC--CCEEEEEEeecCCCcchHhHHHHHHHHHhCCC-CCccceEEEEEeCCeEEEEEecCCCCC
Q 011696          373 NLLGEGGFGSVYKGYLPD--GREVAIKQLKIGGGQGEREFKAEVEIISRIHH-RHLVSLVGYCISDDRRLLIYDYVPNNT  449 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~~--g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~H-pNIv~LlG~~~~~~~~~LV~Ey~~~Gs  449 (479)
                      +.|..|-...+|+....+  ++.|++|....... ..-+..+|+.+++.+.+ .-+.++++++.    ..+||||+++.+
T Consensus         4 ~~l~gG~tN~~~~v~~~~~~~~~~vlR~~~~~~~-~~~d~~~E~~~~~~l~~~gl~P~v~~~~~----~~~l~e~i~G~~   78 (235)
T cd05157           4 KRFTGGITNKLVKVSNKEDNQDAVLVRVYGNKTE-LIIDRERELRIHKLLSKHGLAPKLYATFQ----NGLIYEFIPGRT   78 (235)
T ss_pred             EEcCCcccceEEEEEcCCCCCCeEEEEEccCCcc-ceecHHHHHHHHHHHHhCCCCCeEEEEeC----CcEEEEeeCCCc
Confidence            457788888999988754  67888887653221 11234578888888854 33445554432    248999999877


Q ss_pred             H
Q 011696          450 L  450 (479)
Q Consensus       450 L  450 (479)
                      |
T Consensus        79 l   79 (235)
T cd05157          79 L   79 (235)
T ss_pred             C
Confidence            6

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=94.77  E-value=0.1  Score=51.97  Aligned_cols=76  Identities=16%  Similarity=0.298  Sum_probs=48.6

Q ss_pred             ccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhC---CCCCccceEEEEEeCCeEEEEEecC
Q 011696          369 FADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRI---HHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l---~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      +...+.|+.|....+|+.. .+++.+.||+-.   ......|..|.+-|+.|   .--.+.+++++...++..||||||+
T Consensus        19 i~~~~~v~GG~i~~a~~~~-~~~~~~FvK~~~---~~~~~~f~~Ea~gL~~L~~~~~~~vP~vi~~G~~~~~~fLlle~l   94 (288)
T PF03881_consen   19 ITSIEPVSGGDINEAYRLD-TDGGSYFVKVNS---ESGRDMFEGEAEGLKALAEANPIRVPKVIAWGEYDDDAFLLLEFL   94 (288)
T ss_dssp             --EEEEE--SSSSEEEEEE-TTS-EEEEEEEE---GGGCCHHHHHHHHHHHHCHTTTSBS--EEEEEE-SSCCEEEEE--
T ss_pred             eeeeEecCCCChhheEEEE-CCCccEEEEecC---hhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEEeecCCceEEEEee
Confidence            3445668999999999987 578889999875   22334688888877777   3455779999988888889999999


Q ss_pred             CCC
Q 011696          446 PNN  448 (479)
Q Consensus       446 ~~G  448 (479)
                      +.+
T Consensus        95 ~~~   97 (288)
T PF03881_consen   95 EMG   97 (288)
T ss_dssp             ---
T ss_pred             cCC
Confidence            987

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=94.77  E-value=0.007  Score=66.31  Aligned_cols=89  Identities=19%  Similarity=0.296  Sum_probs=65.7

Q ss_pred             ccccccccccCccceEEEEeC--CCCEEEEEEeecCC--CcchHhHHHHHHHHHhCC-CCCccceEEEEEeCCeEEEEEe
Q 011696          369 FADQNLLGEGGFGSVYKGYLP--DGREVAIKQLKIGG--GQGEREFKAEVEIISRIH-HRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~~--~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~-HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      |...+-||+|.|+.|-.....  ....+|+|.+....  ....+....|+.+-..+. |.|++++++...+.+..++++|
T Consensus        22 ~~~~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~~~~~~~~~  101 (601)
T KOG0590|consen   22 YKLSRSIGKGSFSSSALASNSRDPESSSATKPISIPPKSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSPRSYLLSLS  101 (601)
T ss_pred             ccccccccccccchhhhhhhcCCCcceeeccCCCCCCCccchhhhcCccccccccccccccccccCCccCCCcccccccC
Confidence            334456999999999887653  34457777665433  122223445777777776 9999999999999999999999


Q ss_pred             cCCCCCHHHHH-hcC
Q 011696          444 YVPNNTLYFHL-HGK  457 (479)
Q Consensus       444 y~~~GsL~~~L-~~~  457 (479)
                      |..+|+|++.+ +..
T Consensus       102 ~s~g~~~f~~i~~~~  116 (601)
T KOG0590|consen  102 YSDGGSLFSKISHPD  116 (601)
T ss_pred             cccccccccccccCC
Confidence            99999998877 543

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=94.71  E-value=0.0075  Score=63.19  Aligned_cols=69  Identities=20%  Similarity=0.369  Sum_probs=55.1

Q ss_pred             hcCccccccccccCccceEEEEeC-CCCEEEEEEeecCCCcc-hHhHHHHHHHHHhCCCCCccceEEEEEe
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQG-EREFKAEVEIISRIHHRHLVSLVGYCIS  434 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~~-~~~f~~Ei~il~~l~HpNIv~LlG~~~~  434 (479)
                      .++|....+||.|+||+|+.+... ++..+|||+|...+... ..+.++|+..++++.|.+|+++.-.+..
T Consensus        48 a~~~e~~~~~~~~g~~~~~~~~n~~d~~~~avkritlkn~e~s~~rvl~~~~s~a~feh~g~~~~~ha~~~  118 (516)
T KOG1033|consen   48 ANDFEPGQCLGRGGFGVVFSAQNKADENKYAVKRITLKNREESRSRVLREVSSLAEFEHPGIKRYFHAWYE  118 (516)
T ss_pred             hccccccccccccCccccCCccccccchhhHHHHhcccchhhhhhhhhccccchhhhcccchhhheeceec
Confidence            467888899999999999998753 45589999997555433 3468999999999999999998766543

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=94.70  E-value=0.062  Score=52.52  Aligned_cols=79  Identities=24%  Similarity=0.374  Sum_probs=55.6

Q ss_pred             cccccccccCccceEEEEeCCCCEEEEEEeecCCCc----------------------chHhHHHHHHHHHhCCCC--Cc
Q 011696          370 ADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ----------------------GEREFKAEVEIISRIHHR--HL  425 (479)
Q Consensus       370 ~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~----------------------~~~~f~~Ei~il~~l~Hp--NI  425 (479)
                      ..++.||.|.=+.||.|...+|..+|||.=+.+...                      ....-.+|.++|.+|.-.  +|
T Consensus        94 ~iG~~IGvGKEsdVY~~~~~~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~~V  173 (304)
T COG0478          94 AIGTKIGVGKESDVYVAIDPKGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGVKV  173 (304)
T ss_pred             hhccccccCccceEEEEECCCCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCCCC
Confidence            346889999999999999989999999954322110                      011236789999988544  55


Q ss_pred             cceEEEEEeCCeEEEEEecCCCCCHHH
Q 011696          426 VSLVGYCISDDRRLLIYDYVPNNTLYF  452 (479)
Q Consensus       426 v~LlG~~~~~~~~~LV~Ey~~~GsL~~  452 (479)
                      -+-++    .+...+||||+++--|+.
T Consensus       174 P~P~~----~nRHaVvMe~ieG~eL~~  196 (304)
T COG0478         174 PKPIA----WNRHAVVMEYIEGVELYR  196 (304)
T ss_pred             CCccc----cccceeeeehcccceeec
Confidence            55544    356689999999866643

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=94.68  E-value=0.036  Score=36.87  Aligned_cols=24  Identities=21%  Similarity=0.386  Sum_probs=10.1

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhc
Q 011696          273 IAVAVGIIAFSLIGLVVWCLRRRK  296 (479)
Q Consensus       273 i~v~~~iv~~~ll~l~~~~~~rrk  296 (479)
                      ++++++++++++.++++.|++||.
T Consensus        10 v~V~vg~~iiii~~~~YaCcykk~   33 (38)
T PF02439_consen   10 VAVVVGMAIIIICMFYYACCYKKH   33 (38)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccc
Confidence            333344444444444444444443

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=94.56  E-value=0.016  Score=51.09  Aligned_cols=31  Identities=23%  Similarity=0.185  Sum_probs=15.9

Q ss_pred             ehhhHHHHHHHHHH-HHHHhhhhhhhcccccC
Q 011696          271 VVIAVAVGIIAFSL-IGLVVWCLRRRKKEVSG  301 (479)
Q Consensus       271 i~i~v~~~iv~~~l-l~l~~~~~~rrkk~~~~  301 (479)
                      ++||+++++.+.++ ++++++|++|+|+++..
T Consensus        50 IVIGvVVGVGg~ill~il~lvf~~c~r~kktd   81 (154)
T PF04478_consen   50 IVIGVVVGVGGPILLGILALVFIFCIRRKKTD   81 (154)
T ss_pred             EEEEEEecccHHHHHHHHHhheeEEEecccCc
Confidence            44555555433333 33445566677776643

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=94.53  E-value=0.033  Score=59.26  Aligned_cols=88  Identities=19%  Similarity=0.125  Sum_probs=66.6

Q ss_pred             ccccccccc--cCccceEEEEe---CCCCEEEEEEeecCC--CcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEE
Q 011696          369 FADQNLLGE--GGFGSVYKGYL---PDGREVAIKQLKIGG--GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       369 f~~~~~IG~--G~fG~Vykg~~---~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~L  440 (479)
                      |.....+|+  |.||.||++..   .+++.+|+|+-+...  ......=++|+.-..++ .|.|+|+..-.+++.+..||
T Consensus       116 ~~~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~~~~lfi  195 (524)
T KOG0601|consen  116 FPISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKIDSHENPVRDSPAWEGSGILFI  195 (524)
T ss_pred             cccccccccCCCCCceeecccCCcccCCcccccccccCCCCCccccccccchhhcccccCccccccccCcccccCCccee
Confidence            445577899  99999999876   457789999744322  23333455677767777 69999998888888899999


Q ss_pred             EEecCCCCCHHHHHhcC
Q 011696          441 IYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~  457 (479)
                      -+|++. .+|..|.|..
T Consensus       196 qtE~~~-~sl~~~~~~~  211 (524)
T KOG0601|consen  196 QTELCG-ESLQSYCHTP  211 (524)
T ss_pred             eecccc-chhHHhhhcc
Confidence            999887 7888888864

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=94.52  E-value=0.014  Score=59.32  Aligned_cols=22  Identities=27%  Similarity=0.542  Sum_probs=18.0

Q ss_pred             cCccccccccccCccceEEEEe
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL  388 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~  388 (479)
                      ++|.+++.||+|+-..||.+.+
T Consensus       157 ddyeiG~~igkGC~AaVY~A~~  178 (598)
T KOG4158|consen  157 DDYEIGEFIGKGCNAAVYSARL  178 (598)
T ss_pred             hhhcccchhhccchhhhhhhhc
Confidence            3456678899999999998875

>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A

Probab=94.29  E-value=0.022  Score=44.67  Aligned_cols=16  Identities=38%  Similarity=0.465  Sum_probs=12.5

Q ss_pred             cccHHHHHHHhcCccc
Q 011696          356 MFTYEELVKATDGFAD  371 (479)
Q Consensus       356 ~~~~eel~~~~~~f~~  371 (479)
                      -++|||-.++..+|..
T Consensus        56 P~TYEDP~qAV~eFAk   71 (75)
T PF14575_consen   56 PHTYEDPNQAVREFAK   71 (75)
T ss_dssp             GGGSSSHHHHHHHCSS
T ss_pred             cccccCHHHHHHHHHh
Confidence            4678999888887864

...

>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein)

Probab=94.06  E-value=0.034  Score=57.88  Aligned_cols=38  Identities=29%  Similarity=0.524  Sum_probs=26.9

Q ss_pred             CCCCCCCccceehhhHHHHHHHHHHHHHHhhhhhhhcc
Q 011696          260 PSNNGIGTAGTVVIAVAVGIIAFSLIGLVVWCLRRRKK  297 (479)
Q Consensus       260 ~~~~g~~~~~~i~i~v~~~iv~~~ll~l~~~~~~rrkk  297 (479)
                      .+.++|+++.|+.|+|+++||+..||+|+.|||..|.|
T Consensus       359 ~n~s~LstgaIaGIsvavvvvVgglvGfLcWwf~crgk  396 (397)
T PF03302_consen  359 TNKSGLSTGAIAGISVAVVVVVGGLVGFLCWWFICRGK  396 (397)
T ss_pred             cccccccccceeeeeehhHHHHHHHHHHHhhheeeccc
Confidence            34467778777777777777777777777777766655

>PRK09902 hypothetical protein; Provisional

Probab=93.58  E-value=1.3  Score=41.91  Aligned_cols=97  Identities=12%  Similarity=0.117  Sum_probs=60.5

Q ss_pred             HHHHHHHhcCccccccccccCccceEEEEeCCCCEEEEEEeecCC------CcchHhHHHHHHHHHhCCC--CCccceEE
Q 011696          359 YEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGG------GQGEREFKAEVEIISRIHH--RHLVSLVG  430 (479)
Q Consensus       359 ~eel~~~~~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~------~~~~~~f~~Ei~il~~l~H--pNIv~LlG  430 (479)
                      ++.+-.....+.+.---|+|+..-||+-.+ +|+.+-||+-....      ...+..|.+|+..|.+|..  -++.+++.
T Consensus        10 f~~~w~~~~~wve~pN~~rgG~SgV~r~~~-~g~~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvPVP~pvf   88 (216)
T PRK09902         10 FNHWWATEGDWVEEPNYRRNGMSGVQCVER-NGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVF   88 (216)
T ss_pred             HHHHHhCCCceecCCCcCCCCcceEEEEEe-CCcEEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCCCCccce
Confidence            444444434444333457788888999887 56678888763111      1234579999999999854  34455553


Q ss_pred             EEEeCC----eEEEEEecCCC-CCHHHHHhc
Q 011696          431 YCISDD----RRLLIYDYVPN-NTLYFHLHG  456 (479)
Q Consensus       431 ~~~~~~----~~~LV~Ey~~~-GsL~~~L~~  456 (479)
                      +.....    ..+||+|-+.+ -||.++|..
T Consensus        89 ~~~~k~~~~~rA~LVTe~L~g~~~L~~~l~~  119 (216)
T PRK09902         89 GEAVKIEGEWRALLVTEDMAGFISIADWYAQ  119 (216)
T ss_pred             eeeeccCCceEEEEEEEeCCCCccHHHHHhc
Confidence            332222    35789997764 688887754

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=93.40  E-value=0.25  Score=48.93  Aligned_cols=75  Identities=7%  Similarity=0.060  Sum_probs=50.5

Q ss_pred             cccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCC--ccceEEEE------EeCCeEEEEEe
Q 011696          372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRH--LVSLVGYC------ISDDRRLLIYD  443 (479)
Q Consensus       372 ~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpN--Iv~LlG~~------~~~~~~~LV~E  443 (479)
                      .+.|..|....+|+.... +..+++|+...   ...+++..|++++..|++.+  +.+++..+      ..++..++|||
T Consensus        19 i~~i~~G~~n~~y~v~~~-~~~~vLr~~~~---~~~~~~~~e~~~l~~L~~~g~~vp~~i~~~~g~~~~~~~~~~~~l~~   94 (296)
T cd05153          19 FEGISAGIENTNYFVTTD-SGRYVLTLFEK---VSAEELPFFLALLDHLAERGLPVPRPIADRDGEYLSELAGKPAALVE   94 (296)
T ss_pred             eecccCccccceEEEEeC-CCcEEEEEcCC---CChHhccHHHHHHHHHHHCCCCCCccccCCCCcEeeeeCCceEEEEE
Confidence            456777888899998764 44688887753   23456777888888885443  45554421      22345679999


Q ss_pred             cCCCCCH
Q 011696          444 YVPNNTL  450 (479)
Q Consensus       444 y~~~GsL  450 (479)
                      |++|..+
T Consensus        95 ~i~G~~~  101 (296)
T cd05153          95 FLAGEHL  101 (296)
T ss_pred             eCCCCCC
Confidence            9998775

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>TIGR02721 ycfN_thiK thiamine kinase

Probab=93.39  E-value=0.23  Score=48.24  Aligned_cols=72  Identities=10%  Similarity=0.027  Sum_probs=48.2

Q ss_pred             ccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCc-cceEEEEEeCCeEEEEEecCCCCCHH
Q 011696          375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHL-VSLVGYCISDDRRLLIYDYVPNNTLY  451 (479)
Q Consensus       375 IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNI-v~LlG~~~~~~~~~LV~Ey~~~GsL~  451 (479)
                      +..|..+.+|+... +|+.++||..........-++.+|.++|+.+..-+| -++++++.    .++||||++|..+.
T Consensus         4 ~~~G~tn~~y~~~~-~~~~~vlR~~~~~~~~~~~~r~~E~~~l~~l~~~g~~P~~i~~~~----~~~v~e~i~G~~~~   76 (256)
T TIGR02721         4 LSGGLTNRSWRIEH-PGISFVWRPQSPVCKALGVDRQREYQILQALSALGLAPKPILVNE----HWLLVEWLEGEVIT   76 (256)
T ss_pred             CCCcCcCCeEEEEe-CCccEEEeeCCcccccccCcHHHHHHHHHHHHhcCCCCceEEEeC----CEEEEEeccCcccc
Confidence            55688889998874 677788887543222211246789999998865444 35555542    36899999987653

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=93.28  E-value=0.1  Score=48.62  Aligned_cols=37  Identities=24%  Similarity=0.547  Sum_probs=31.0

Q ss_pred             HHHHHHHHhCCC-CCccceEEEEEeCCeEEEEEecCCCCCHH
Q 011696          411 KAEVEIISRIHH-RHLVSLVGYCISDDRRLLIYDYVPNNTLY  451 (479)
Q Consensus       411 ~~Ei~il~~l~H-pNIv~LlG~~~~~~~~~LV~Ey~~~GsL~  451 (479)
                      .+|..+|..+.+ .++.+++|+|    ..++|.||+..++++
T Consensus         7 ~~E~lll~~l~~~~~~pk~lG~C----G~~~v~E~~~~~~~~   44 (188)
T PF12260_consen    7 NNEPLLLQLLQGSEPFPKLLGSC----GRFYVVEYVGAGSLY   44 (188)
T ss_pred             ccHHHHHHHcCCCCCCCCeeeEC----CCEEEEEeecCcccc
Confidence            468888999976 6999999999    557899999988764

Proteins in this uncharacterised family are described as transmembrane proteins.

>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]

Probab=93.25  E-value=0.044  Score=60.31  Aligned_cols=30  Identities=30%  Similarity=0.495  Sum_probs=24.1

Q ss_pred             cHHHHHHHhcCccccccccccCccceEEEEe
Q 011696          358 TYEELVKATDGFADQNLLGEGGFGSVYKGYL  388 (479)
Q Consensus       358 ~~eel~~~~~~f~~~~~IG~G~fG~Vykg~~  388 (479)
                      .-+|++..++ +..++.||+|+||+||.|.-
T Consensus       986 v~deWe~~r~-it~~relg~gsfg~Vy~g~~ 1015 (1025)
T KOG4258|consen  986 VPDEWEVSRE-ITLGRELGQGSFGMVYEGNA 1015 (1025)
T ss_pred             ChhHHHHHHH-HhhhhhhccCccceEEEecC
Confidence            3466766666 77788999999999999974

>COG3001 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.19  E-value=0.21  Score=47.82  Aligned_cols=75  Identities=15%  Similarity=0.237  Sum_probs=51.4

Q ss_pred             cccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhC---CCCCccceEEEEEeCCeEEEEEecCCCC
Q 011696          372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRI---HHRHLVSLVGYCISDDRRLLIYDYVPNN  448 (479)
Q Consensus       372 ~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l---~HpNIv~LlG~~~~~~~~~LV~Ey~~~G  448 (479)
                      .+.|.-|..-+.|+... +...+-||+-.   ......|..|+.-|..|   +--+|-+++++-.+.+..||||||++.|
T Consensus        21 r~~v~gG~inea~~v~d-g~~~~FvK~n~---~~~~~~f~AEa~gL~~la~s~ti~VP~vi~~G~~~~~sylVle~L~~~   96 (286)
T COG3001          21 REEVSGGDINEAWRLRD-GTDPFFVKCNQ---REQLSMFTAEADGLELLARSNTITVPKVIAVGASRDHSYLVLEYLPTG   96 (286)
T ss_pred             ccccCCccccceeEeec-CCcceEEEecc---hhhHHHHHHHHHHHHHHHhcCCccccceEEecCCCCeeEEEEeeccCC
Confidence            34555566556665543 55678888642   23345688888666655   4455778888888888999999999986


Q ss_pred             CH
Q 011696          449 TL  450 (479)
Q Consensus       449 sL  450 (479)
                      .|
T Consensus        97 ~~   98 (286)
T COG3001          97 PL   98 (286)
T ss_pred             CC
Confidence            66

>PLN02756 S-methyl-5-thioribose kinase

Probab=92.79  E-value=0.64  Score=48.49  Aligned_cols=80  Identities=19%  Similarity=0.162  Sum_probs=51.9

Q ss_pred             cccccccCccceEEEEeCCCCEEEEEEee-----cCCC--cchHhHHHHHHHHHhC---CCCCccceEEEEEeCCeEEEE
Q 011696          372 QNLLGEGGFGSVYKGYLPDGREVAIKQLK-----IGGG--QGEREFKAEVEIISRI---HHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       372 ~~~IG~G~fG~Vykg~~~~g~~VAVK~l~-----~~~~--~~~~~f~~Ei~il~~l---~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      .+.||.|....||+... +++.|+||+-.     ....  ...+.-..|++.|..+   ..-+|-+++++|.  +..+||
T Consensus        37 ~~eiggGn~N~VyrV~~-~~~svVVKqa~p~~r~vga~wpl~~~R~~~Ea~aL~~~~~~~p~~VPkVy~~de--d~~vlv  113 (418)
T PLN02756         37 IKEVGDGNLNFVYIVVS-SSGSFVIKQALPYIRCIGESWPMTKERAYFEATALREHGRLCPDHVPEVYHFDR--TMALIG  113 (418)
T ss_pred             EEEcCCCceeeEEEEEc-CCccEEEEeCCccccCCCccccCCccHHHHHHHHHHHhhhcCCCCCCeEEEECC--CCCEEE
Confidence            35689999999999776 45678898753     1110  1222233335555544   3467889999986  556889


Q ss_pred             EecCCC--CCHHHHH
Q 011696          442 YDYVPN--NTLYFHL  454 (479)
Q Consensus       442 ~Ey~~~--GsL~~~L  454 (479)
                      |||+.+  ..|++.|
T Consensus       114 ME~L~~~~~ilr~~L  128 (418)
T PLN02756        114 MRYLEPPHIILRKGL  128 (418)
T ss_pred             EeecCCcceehhhhh
Confidence            999977  3555444

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=92.24  E-value=0.058  Score=53.85  Aligned_cols=42  Identities=21%  Similarity=0.411  Sum_probs=34.0

Q ss_pred             HHHHhCCCCCccceEEEEEeCC-----eEEEEEecCCCCCHHHHHhc
Q 011696          415 EIISRIHHRHLVSLVGYCISDD-----RRLLIYDYVPNNTLYFHLHG  456 (479)
Q Consensus       415 ~il~~l~HpNIv~LlG~~~~~~-----~~~LV~Ey~~~GsL~~~L~~  456 (479)
                      +-|-.+.|-|||+++.|+.+..     ...++.|||+.|+|..+|++
T Consensus       119 dnllqlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkr  165 (458)
T KOG1266|consen  119 DNLLQLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKR  165 (458)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHH
Confidence            3455678999999999986543     35789999999999999975

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=92.16  E-value=0.089  Score=35.64  Aligned_cols=27  Identities=33%  Similarity=0.364  Sum_probs=15.5

Q ss_pred             cceehhhHHHHHHHHHHHHHHhhhhhhh
Q 011696          268 AGTVVIAVAVGIIAFSLIGLVVWCLRRR  295 (479)
Q Consensus       268 ~~~i~i~v~~~iv~~~ll~l~~~~~~rr  295 (479)
                      +..+++.++ +++++++++|++|++|+|
T Consensus        14 a~~VvVPV~-vI~~vl~~~l~~~~rR~k   40 (40)
T PF08693_consen   14 AVGVVVPVG-VIIIVLGAFLFFWYRRKK   40 (40)
T ss_pred             EEEEEechH-HHHHHHHHHhheEEeccC
Confidence            334444443 445556666777777764

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>TIGR01478 STEVOR variant surface antigen, stevor family

Probab=91.88  E-value=0.14  Score=49.86  Aligned_cols=22  Identities=45%  Similarity=0.641  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHhhhhhhhcccc
Q 011696          278 GIIAFSLIGLVVWCLRRRKKEV  299 (479)
Q Consensus       278 ~iv~~~ll~l~~~~~~rrkk~~  299 (479)
                      .+++|++|+|.+|++||||+.+
T Consensus       269 lil~vvliiLYiWlyrrRK~sw  290 (295)
T TIGR01478       269 IILTVVLIILYIWLYRRRKKSW  290 (295)
T ss_pred             HHHHHHHHHHHHHHHHhhcccc
Confidence            3444555566667776666644

This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=91.79  E-value=0.92  Score=44.01  Aligned_cols=88  Identities=18%  Similarity=0.232  Sum_probs=51.8

Q ss_pred             ccHHHHHHHhcCccccc---cccccCccceEEEEeCCCCEEEEEEeecCCCcch-------------------H-----h
Q 011696          357 FTYEELVKATDGFADQN---LLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGE-------------------R-----E  409 (479)
Q Consensus       357 ~~~eel~~~~~~f~~~~---~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~-------------------~-----~  409 (479)
                      .+++.|....++....+   .|..|.-..||+|.-.++..||||+.+.......                   +     .
T Consensus        35 ~t~~~l~~L~~rg~i~~~~g~istGKEA~Vy~a~~~~~~~~avKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~rr~lv~~W  114 (268)
T COG1718          35 RTLETLRRLLSRGVITELVGCISTGKEANVYLAETGDGRYVAVKIYRTSTSEFKRIRRYIQGDPRFRNSRSNRRKLVFAW  114 (268)
T ss_pred             HHHHHHHHHhcCCceeeeEeeecCCcceEEEeeccCCCceEEEEEEehhhhhhhhHHHHHhcChhhhcCCCCHHHHHHHH
Confidence            34555555544444444   4556667789999887899999998864322111                   1     0


Q ss_pred             HHHHHHHHHhCC--CCCccceEEEEEeCCeEEEEEecCCCC
Q 011696          410 FKAEVEIISRIH--HRHLVSLVGYCISDDRRLLIYDYVPNN  448 (479)
Q Consensus       410 f~~Ei~il~~l~--HpNIv~LlG~~~~~~~~~LV~Ey~~~G  448 (479)
                      -.+|..-|.++.  |-.+-+=+++    ....|||||+...
T Consensus       115 ~~kEf~NL~R~~eAGVrvP~Pi~~----~~nVLvMEfIg~~  151 (268)
T COG1718         115 ARKEFRNLKRAYEAGVRVPEPIAF----RNNVLVMEFIGDD  151 (268)
T ss_pred             HHHHHHHHHHHHHcCCCCCCceee----cCCeEEEEeccCC
Confidence            235666666653  2333333333    2447999999765

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=91.66  E-value=0.99  Score=45.07  Aligned_cols=76  Identities=11%  Similarity=0.047  Sum_probs=47.3

Q ss_pred             cccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCC--CccceEEEE------EeCCeEEEEEe
Q 011696          372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHR--HLVSLVGYC------ISDDRRLLIYD  443 (479)
Q Consensus       372 ~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~Hp--NIv~LlG~~------~~~~~~~LV~E  443 (479)
                      .+.|+.|....+|+....+| .+++|..+...  ..++...|++++..|.+.  +|.+++..+      ..++..++|||
T Consensus        27 i~~~~~G~~n~~y~v~t~~~-~~vLK~~~~~~--~~~~i~~e~~~l~~L~~~g~pvp~~i~t~~g~~~~~~~g~~~~l~e  103 (307)
T TIGR00938        27 LKGIAEGVENSNYLLTTDVG-RYILTLYEKRV--KAEELPFFLALTTHLAARGLPVPKPVKSRDGRQLSTLAGKPACLVE  103 (307)
T ss_pred             ccccCCccccceEEEEeCCC-cEEEEEecCCC--CHHHHHHHHHHHHHHHHCCCCCCccccCCCCCeehhcCCeEEEEEE
Confidence            34577777789999876555 56778765322  233455667777776432  345555532      12345689999


Q ss_pred             cCCCCCH
Q 011696          444 YVPNNTL  450 (479)
Q Consensus       444 y~~~GsL  450 (479)
                      |++|..+
T Consensus       104 ~i~G~~~  110 (307)
T TIGR00938       104 FLQGLSV  110 (307)
T ss_pred             eCCCCCC
Confidence            9998654

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=91.66  E-value=0.33  Score=48.28  Aligned_cols=73  Identities=26%  Similarity=0.330  Sum_probs=48.6

Q ss_pred             cccccCccceEEEEeCC-------CCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCcc-ceEEEEEeCCeEEEEEecC
Q 011696          374 LLGEGGFGSVYKGYLPD-------GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLV-SLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       374 ~IG~G~fG~Vykg~~~~-------g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv-~LlG~~~~~~~~~LV~Ey~  445 (479)
                      .|..|-...||+....+       ++.+++|...... ....+..+|++++..+...+|. ++++++.    ..+||||+
T Consensus         5 ~l~gGltN~~y~v~~~~~~~~~~~~~~~vlRi~~~~~-~~~~~r~~E~~~~~~l~~~g~~P~~~~~~~----~~~v~e~i   79 (302)
T cd05156           5 KISGGLTNAVYKVSLPDEDALSDEPRKVLLRVYGQSV-ELLIDRERELVVFARLSERNLGPKLYGIFP----NGRIEEFI   79 (302)
T ss_pred             EecCcccceeEEEEcCCcccccCCCCeEEEEEecCCC-cceechHHHHHHHHHHHhCCCCCceEEEeC----CCchhhee
Confidence            45567777899887654       4788888865432 2234567888888888544444 6666653    23689999


Q ss_pred             CCCCHH
Q 011696          446 PNNTLY  451 (479)
Q Consensus       446 ~~GsL~  451 (479)
                      +|..|.
T Consensus        80 ~G~~l~   85 (302)
T cd05156          80 PSRTLT   85 (302)
T ss_pred             CCCcCC
Confidence            987764

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>PTZ00370 STEVOR; Provisional

Probab=91.55  E-value=0.14  Score=49.81  Aligned_cols=22  Identities=45%  Similarity=0.634  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHhhhhhhhcccc
Q 011696          278 GIIAFSLIGLVVWCLRRRKKEV  299 (479)
Q Consensus       278 ~iv~~~ll~l~~~~~~rrkk~~  299 (479)
                      .+++|++|+|.+|++||||+.+
T Consensus       265 lil~vvliilYiwlyrrRK~sw  286 (296)
T PTZ00370        265 LILAVVLIILYIWLYRRRKNSW  286 (296)
T ss_pred             HHHHHHHHHHHHHHHHhhcchh
Confidence            3444555566667776666644

>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase

Probab=90.42  E-value=0.28  Score=33.03  Aligned_cols=29  Identities=17%  Similarity=0.547  Sum_probs=14.6

Q ss_pred             ceehhhHHHHHHHHHHHHHHhhhhhhhcc
Q 011696          269 GTVVIAVAVGIIAFSLIGLVVWCLRRRKK  297 (479)
Q Consensus       269 ~~i~i~v~~~iv~~~ll~l~~~~~~rrkk  297 (479)
                      |++++.++++++++.+++++.+.+|..||
T Consensus         9 GVIlVF~lVglv~i~iva~~iYRKw~aRk   37 (43)
T PF08114_consen    9 GVILVFCLVGLVGIGIVALFIYRKWQARK   37 (43)
T ss_pred             CeeeehHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444555555555555555554333

Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=90.39  E-value=0.05  Score=58.70  Aligned_cols=71  Identities=7%  Similarity=0.062  Sum_probs=53.0

Q ss_pred             ccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCC-ccceEEEEEeCCeEEEEEecCCCC
Q 011696          373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRH-LVSLVGYCISDDRRLLIYDYVPNN  448 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpN-Iv~LlG~~~~~~~~~LV~Ey~~~G  448 (479)
                      +.+++|+++++||.+-...+...++.+...     .+..-++++|.+++|+| .+.-++-|..++..+++++|+.+|
T Consensus       248 h~fvK~altknpKkRptaeklL~h~fvs~~-----l~~rl~~eLLdK~n~P~~~v~~~~d~~~E~~~~i~~~i~s~~  319 (829)
T KOG0576|consen  248 HNFVKGALTKNPKKRPTAEKLLQHPFVSQT-----LSRRLAIELLDKVNNPNPVVRYLEDYDGEDYLWIPMRICSTG  319 (829)
T ss_pred             HHHHHHHhcCCCccCCChhhheeceeeccc-----hhhHHHHHHHHHccCCCCcccccccCCcccccchhhhhhcCC
Confidence            447899999999987433333335544321     45566889999999999 777777777778888999999888

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=90.24  E-value=1.6  Score=41.78  Aligned_cols=87  Identities=11%  Similarity=0.125  Sum_probs=52.3

Q ss_pred             hcCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHh---------HHHHHHHHHhCCC---CCccceEEEEE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGERE---------FKAEVEIISRIHH---RHLVSLVGYCI  433 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~---------f~~Ei~il~~l~H---pNIv~LlG~~~  433 (479)
                      .++|...+++-......|.+-.. +|+.+.+|..+......++.         +.+++..+.+++.   -+++.++.++.
T Consensus        30 ~~~~~~~kv~k~~~r~~ValIei-~~~kyIlK~pr~~~~r~er~~~sf~kg~~~~~l~~~~~~i~~~g~~~~~~~yl~~e  108 (229)
T PF06176_consen   30 DNNYKIIKVFKNTKRNYVALIEI-DGKKYILKEPREENRRPERRFKSFFKGSEYSRLINNTDKIRNEGFTEPADPYLAAE  108 (229)
T ss_pred             hCCceEEEeecCCCccEEEEEEE-CCcEEEEeccchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHcCccccccceeeee
Confidence            35666667777777666777666 77889999886443322222         2345555555533   33344444443


Q ss_pred             eC-----CeEEEEEecCCCCCHHHH
Q 011696          434 SD-----DRRLLIYDYVPNNTLYFH  453 (479)
Q Consensus       434 ~~-----~~~~LV~Ey~~~GsL~~~  453 (479)
                      ..     ...+|||||++|..|.++
T Consensus       109 kk~~~~~~~~~ll~EYIeG~~l~d~  133 (229)
T PF06176_consen  109 KKIFRYTSSYVLLMEYIEGVELNDI  133 (229)
T ss_pred             eeeccceeEEEEEEEEecCeecccc
Confidence            22     234689999999888654

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=90.13  E-value=0.53  Score=45.05  Aligned_cols=73  Identities=11%  Similarity=0.234  Sum_probs=45.4

Q ss_pred             ccccccCcc-ceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCC---CccceEEEEEeCC---eEEEEEecC
Q 011696          373 NLLGEGGFG-SVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHR---HLVSLVGYCISDD---RRLLIYDYV  445 (479)
Q Consensus       373 ~~IG~G~fG-~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~Hp---NIv~LlG~~~~~~---~~~LV~Ey~  445 (479)
                      +.|+.|+.. .||+.    +..++||..+.  .....++.+|+++|..|...   .+-++++.+...+   ..++||||+
T Consensus         3 ~~~~~gG~~n~vy~~----~~~~VlR~~~~--~~~~~~~~~E~~~l~~L~~~~~v~vP~~~~~~~~~~~~~~~~~l~~~i   76 (235)
T cd05155           3 EPVDSGGTDNATFRL----GDDMSVRLPSA--AGYAGQVRKEQRWLPRLAPHLPLPVPEPLGKGEPGEGYPWPWSVYRWL   76 (235)
T ss_pred             eeccCCCcccceEEc----CCceEEEcCCc--cchHHHHHHHHHHHHHHhccCCCCCCceeecCCCccCCCcceEEEEee
Confidence            346666665 58874    23466665443  22345799999999888542   3445555543322   347899999


Q ss_pred             CCCCHH
Q 011696          446 PNNTLY  451 (479)
Q Consensus       446 ~~GsL~  451 (479)
                      +|.+|.
T Consensus        77 ~G~~l~   82 (235)
T cd05155          77 EGETAT   82 (235)
T ss_pred             cCCCCC
Confidence            987773

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>PRK05231 homoserine kinase; Provisional

Probab=90.03  E-value=2.2  Score=42.62  Aligned_cols=90  Identities=11%  Similarity=0.062  Sum_probs=50.8

Q ss_pred             ccHHHHHHHhcCccc-----cccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCC--ccceE
Q 011696          357 FTYEELVKATDGFAD-----QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRH--LVSLV  429 (479)
Q Consensus       357 ~~~eel~~~~~~f~~-----~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpN--Iv~Ll  429 (479)
                      ++.+++....+.|..     .+.|+.|....+|+....+| .+++|+++.   ...++...|+++|..|...+  |.+.+
T Consensus         7 ls~~~l~~~l~~y~~~~~~~~~~l~~G~~n~~y~v~t~~g-~~vLK~~~~---~~~~~l~~~~~~l~~L~~~glpvP~~i   82 (319)
T PRK05231          7 VSDDELAAFLAPYDLGELLSLKGIAEGIENSNFFLTTTQG-EYVLTLFER---LTAEDLPFFLGLMQHLAARGVPVPAPV   82 (319)
T ss_pred             CCHHHHHHHHHhcCCchhhccchhccccccceEEEEeCCC-cEEEEEecc---CChHHhHHHHHHHHHHHHCCCCCCcce
Confidence            344555443334432     34567777789999887555 688887752   12333444555555553222  33444


Q ss_pred             EE------EEeCCeEEEEEecCCCCCH
Q 011696          430 GY------CISDDRRLLIYDYVPNNTL  450 (479)
Q Consensus       430 G~------~~~~~~~~LV~Ey~~~GsL  450 (479)
                      ..      ....+..++||||++|..+
T Consensus        83 ~~~~G~~~~~~~g~~~~l~~~l~G~~~  109 (319)
T PRK05231         83 ARRDGAALGELAGKPAAIVTFLEGKWP  109 (319)
T ss_pred             eCCCCCEeeeeCCEEEEEEEecCCCCC
Confidence            31      1224556899999998754

>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2

Probab=89.94  E-value=0.35  Score=38.39  Aligned_cols=11  Identities=36%  Similarity=0.754  Sum_probs=4.5

Q ss_pred             HHhhhhhhhcc
Q 011696          287 LVVWCLRRRKK  297 (479)
Q Consensus       287 l~~~~~~rrkk  297 (479)
                      +++.|+++|||
T Consensus        50 lwfvCC~kRkr   60 (94)
T PF05393_consen   50 LWFVCCKKRKR   60 (94)
T ss_pred             HHHHHHHHhhh
Confidence            33444444444

; GO: 0016021 integral to membrane

>PF15345 TMEM51: Transmembrane protein 51

Probab=89.85  E-value=1  Score=42.64  Aligned_cols=8  Identities=38%  Similarity=0.509  Sum_probs=3.4

Q ss_pred             ccHHHHHH
Q 011696          357 FTYEELVK  364 (479)
Q Consensus       357 ~~~eel~~  364 (479)
                      -+||++..
T Consensus       152 PSYesl~~  159 (233)
T PF15345_consen  152 PSYESLTG  159 (233)
T ss_pred             CCcccccc
Confidence            34444433

>PLN00181 protein SPA1-RELATED; Provisional

Probab=89.26  E-value=0.12  Score=58.81  Aligned_cols=59  Identities=17%  Similarity=0.103  Sum_probs=36.3

Q ss_pred             hCCC-CCccceEEEE-------EeCCeEEEEEecCCCCCHHHHHhcC-CcccchhHHHHHHHHHHhhcc
Q 011696          419 RIHH-RHLVSLVGYC-------ISDDRRLLIYDYVPNNTLYFHLHGK-WQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       419 ~l~H-pNIv~LlG~~-------~~~~~~~LV~Ey~~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      +++| .||++|+|+|       .+.+..+++|||+ +++|+++|+.. ..+.+....++..-++.+|-|
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~   95 (793)
T PLN00181         28 SLSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECE-DVSLRQWLDNPDRSVDAFECFHVFRQIVEIVNA   95 (793)
T ss_pred             hhhHHHHHHHhhcccCCccccccccchhhhhhccC-CccHHHHHhcccccccHHHHHHHHHHHHHHHHH
Confidence            4455 6888888887       3334566788887 56999999753 223444444444444444444

>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]

Probab=89.17  E-value=1.1  Score=46.09  Aligned_cols=29  Identities=34%  Similarity=0.444  Sum_probs=24.8

Q ss_pred             cccccccCccceEEEEeCCCCEEEEEEee
Q 011696          372 QNLLGEGGFGSVYKGYLPDGREVAIKQLK  400 (479)
Q Consensus       372 ~~~IG~G~fG~Vykg~~~~g~~VAVK~l~  400 (479)
                      ..+|..|.-+.||.++-.+|..+|||+.+
T Consensus       149 nGCiSTGKEANVYHat~~dG~~~AIKIYK  177 (520)
T KOG2270|consen  149 NGCISTGKEANVYHATEEDGSEFAIKIYK  177 (520)
T ss_pred             ccccccCccceeEeeecCCCceEEEEEEe
Confidence            34678888889999998899999999765

>KOG3021 consensus Predicted kinase [General function prediction only]

Probab=89.15  E-value=1.2  Score=42.32  Aligned_cols=88  Identities=22%  Similarity=0.247  Sum_probs=56.8

Q ss_pred             HHHHHhcCccccccccccCccceEEEEe--CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccc---eEEEEEe-
Q 011696          361 ELVKATDGFADQNLLGEGGFGSVYKGYL--PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVS---LVGYCIS-  434 (479)
Q Consensus       361 el~~~~~~f~~~~~IG~G~fG~Vykg~~--~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~---LlG~~~~-  434 (479)
                      +++.+.-+....+.||.-+=|.+-.|..  .|.-.|.||.-+   ....+.|.-|+.-|..|+.-+.|+   -+++... 
T Consensus         3 e~l~ael~~~~vr~~gs~gggcI~~~r~ydtDaG~~FvK~nr---~~~~~mfeGE~~sLeAi~sT~tv~vprpikvid~p   79 (313)
T KOG3021|consen    3 ELLRAELGLNNVRALGSVGGGCISDGRHYDTDAGKVFVKVNR---SIARDMFEGELASLEAIQSTETVLVPRPIKVIDLP   79 (313)
T ss_pred             HHHHHhcCcceeeeecCCCCceeccccccccCCccEEEEecc---ccchHHHhhHHHHHHHHHhcCceecCCceeeEecC
Confidence            4444444444556677644455655642  234468888643   245667999998888887666663   3555554 


Q ss_pred             CCeEEEEEecCCCCCHH
Q 011696          435 DDRRLLIYDYVPNNTLY  451 (479)
Q Consensus       435 ~~~~~LV~Ey~~~GsL~  451 (479)
                      ....+||||||..+.|.
T Consensus        80 ~Ggs~lime~idf~~lr   96 (313)
T KOG3021|consen   80 GGGSSLIMEHIDFQGLR   96 (313)
T ss_pred             CCceeeeeehhhcccch
Confidence            56678999999988774

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=89.07  E-value=2  Score=40.37  Aligned_cols=49  Identities=22%  Similarity=0.197  Sum_probs=36.4

Q ss_pred             HhHHHHHHHHHhCC--CCCccceEEEEEeCC----eEEEEEecCCC-CCHHHHHhc
Q 011696          408 REFKAEVEIISRIH--HRHLVSLVGYCISDD----RRLLIYDYVPN-NTLYFHLHG  456 (479)
Q Consensus       408 ~~f~~Ei~il~~l~--HpNIv~LlG~~~~~~----~~~LV~Ey~~~-GsL~~~L~~  456 (479)
                      ..+.+|.+.+.+|.  .=.+.+.+++.+...    ..+||+|++++ .+|.+++.+
T Consensus        56 ~ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~  111 (206)
T PF06293_consen   56 SRAKREWRNLQRLREAGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQ  111 (206)
T ss_pred             hHHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHh
Confidence            36888998888884  445567788876533    34799999998 479888875

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5

Probab=88.87  E-value=0.12  Score=50.97  Aligned_cols=9  Identities=44%  Similarity=1.025  Sum_probs=0.0

Q ss_pred             hhhhhhhcc
Q 011696          289 VWCLRRRKK  297 (479)
Q Consensus       289 ~~~~~rrkk  297 (479)
                      ++|+||||+
T Consensus       167 ~icyrrkR~  175 (290)
T PF05454_consen  167 CICYRRKRK  175 (290)
T ss_dssp             ---------
T ss_pred             HHhhhhhhc
Confidence            334444433

5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.

>PF04655 APH_6_hur: Aminoglycoside/hydroxyurea antibiotic resistance kinase; InterPro: IPR006748 The aminoglycosides are a large group of biologically active bacterial secondary metabolites, best known for their antibiotic properties []

Probab=88.57  E-value=0.95  Score=44.18  Aligned_cols=104  Identities=16%  Similarity=0.064  Sum_probs=0.0

Q ss_pred             hcCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHH---HHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEV---EIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei---~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      +.++.....+..|..+.|++++..+|..+++|....     ..++..|.   ..|+..+-...|+|++.  +.+...|++
T Consensus         1 RW~L~~~~~~~~g~~s~V~pv~~~dG~~avLKl~~p-----~~~~~~E~~g~~~L~~w~G~GaVrll~~--d~~~~AlLL   73 (253)
T PF04655_consen    1 RWGLTPDGPPAHGSSSLVVPVRRADGTPAVLKLAPP-----HAEAEHEARGEAALRWWNGRGAVRLLAA--DPERGALLL   73 (253)
T ss_pred             CCccccCCCCCCCcceEEEEEEcCCCCeEEEEecCC-----cccchhhhhHHhHhheeCCCCceeeecc--ccccchhhh


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhh
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~  476 (479)
                      |++..|.....+........-++..-..+..+.+
T Consensus        74 Erl~~g~~L~~~~~~g~d~~a~~i~a~l~~~L~~  107 (253)
T PF04655_consen   74 ERLDPGRSLASLPREGDDDEATRIAAGLLRRLHR  107 (253)
T ss_pred             hhccCCCchhhcccccCchHHHHHHHHHHHHHhC

Aminoglycoside phosphotransferases achieve inactivation of these enzymes by phosphorylation, utilising ATP. Likewise, hydroxyurea is inactivated by phosphorylation of the hydroxy group in the hydroxylamine moiety.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0006468 protein phosphorylation, 0019748 secondary metabolic process

>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ]

Probab=87.74  E-value=0.39  Score=41.80  Aligned_cols=28  Identities=29%  Similarity=0.514  Sum_probs=0.0

Q ss_pred             ehhhHHHHHHHHHHHHHHhhhhhhhccc
Q 011696          271 VVIAVAVGIIAFSLIGLVVWCLRRRKKE  298 (479)
Q Consensus       271 i~i~v~~~iv~~~ll~l~~~~~~rrkk~  298 (479)
                      +.|.+++++++++++++++||-+||||+
T Consensus        32 ~tILiaIvVliiiiivli~lcssRKkKa   59 (189)
T PF05568_consen   32 YTILIAIVVLIIIIIVLIYLCSSRKKKA   59 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHH

>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear

Probab=87.41  E-value=0.34  Score=48.67  Aligned_cols=30  Identities=30%  Similarity=0.486  Sum_probs=0.0

Q ss_pred             eehhhHHHHHHHHHHHHHHhhhhhhhcccc
Q 011696          270 TVVIAVAVGIIAFSLIGLVVWCLRRRKKEV  299 (479)
Q Consensus       270 ~i~i~v~~~iv~~~ll~l~~~~~~rrkk~~  299 (479)
                      ++-|+|+++|+++++|+|+.|++.|||.+.
T Consensus       272 ~vPIaVG~~La~lvlivLiaYli~Rrr~~~  301 (306)
T PF01299_consen  272 LVPIAVGAALAGLVLIVLIAYLIGRRRSRA  301 (306)
T ss_pred             hHHHHHHHHHHHHHHHHHHhheeEeccccc

Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane

>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world

Probab=86.43  E-value=0.4  Score=47.74  Aligned_cols=32  Identities=22%  Similarity=0.307  Sum_probs=0.0

Q ss_pred             ceehhhHHHHHHHHHHHHHHhhhhhhhccccc
Q 011696          269 GTVVIAVAVGIIAFSLIGLVVWCLRRRKKEVS  300 (479)
Q Consensus       269 ~~i~i~v~~~iv~~~ll~l~~~~~~rrkk~~~  300 (479)
                      .+++.+++++++++++|++++++++||||++.
T Consensus       257 ~I~aSiiaIliIVLIMvIIYLILRYRRKKKmk  288 (299)
T PF02009_consen  257 AIIASIIAILIIVLIMVIIYLILRYRRKKKMK  288 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh

Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].

>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins

Probab=86.25  E-value=1.1  Score=37.16  Aligned_cols=68  Identities=12%  Similarity=0.166  Sum_probs=0.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCccceehhhHHHHHHHHHHHHHHhhhhhhhcccccCCCCcccc
Q 011696          241 TENTPGNGTNPSSPESSSSPSNNGIGTAGTVVIAVAVGIIAFSLIGLVVWCLRRRKKEVSGLNGVYIM  308 (479)
Q Consensus       241 ~~~~~~~~~~~s~~~s~ss~~~~g~~~~~~i~i~v~~~iv~~~ll~l~~~~~~rrkk~~~~~~~~~~~  308 (479)
                      ......................+..+...+++++++.++++++++.+++||+-.|++++........+
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iili~lls~v~IlVily~IyYFVILRer~~~~~~~p~~~  101 (101)
T PF06024_consen   34 NNNNNDNSSYPYNDINNENSNASKQNNGNIILISLLSFVCILVILYAIYYFVILRERQKSIRNQPSFM  101 (101)
T ss_pred             ccCCCccccccccccccccccccccccccchHHHHHHHHHHHHHHhhheEEEEEecccccccCCCCcC

>cd05124 AFK Actin-Fragmin Kinase (AFK); catalytic domain

Probab=86.21  E-value=2.1  Score=40.96  Aligned_cols=96  Identities=16%  Similarity=0.216  Sum_probs=0.0

Q ss_pred             cceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeC-------------------------
Q 011696          381 GSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISD-------------------------  435 (479)
Q Consensus       381 G~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~-------------------------  435 (479)
                      |.|+-+.+.+.+. ..-.+|.......+-|..++...-++.-++ ++++.+|..+                         
T Consensus        10 s~~~~~~F~~s~~-~a~ViK~s~ti~~E~~~~~La~~LgVpiPq-~rvi~~~~~E~~e~~~~L~~a~~~~~~~~~~i~~e   87 (238)
T cd05124          10 SGVFGALFVESES-GAIVVKSSPNIASEYFLSKLAKILGLPIPQ-MRVLEWNSSEFTEMSENLLKASSEDECLERRITLE   87 (238)
T ss_pred             CceEEEEEEcCCC-cEEEEEcCccHHHHHHHHHHHHHhCCCCCc-eeeeecCCHHHHHHHHHHHHHHhcchhHHHHHHHH


Q ss_pred             -Ce-EEEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          436 -DR-RLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       436 -~~-~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                       +. .++||||++|+.|++.+..+. .+..-++++..|=..+++||
T Consensus        88 l~~~~flimeYv~G~~l~~~~~~~~-s~~~~~~~~~~LG~ii~lDi  132 (238)
T cd05124          88 LEKAYLLIMEYVPGITLFKMTTHRA-SEYKGEERLIQLGKIIALDI  132 (238)
T ss_pred             HhhhheeeeeecCCccchhhccccc-cchhhHHHHHHhhhhheeee

The AFK catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). AFK is found in slime molds, ciliates, and flowering plants. It catalyzes the transfer of the gamma-phosphoryl group from ATP specifically to threonine residues in the actin-fragmin complex. The phosphorylation sites are located at a minor contact site for DNase I and at an actin-actin contact site. Fragmin is an actin-binding protein that functions as a regulator of the microfilament system. It interferes with the growth of F-actin by severing actin filaments and capping their ends. The phosphorylation of the actin-fragmin complex inhibits its nucleation activity and results in calcium-dependent capping activity. Thus, AFK plays a role in regulating ac

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=85.53  E-value=4.2  Score=41.81  Aligned_cols=105  Identities=15%  Similarity=0.137  Sum_probs=0.0

Q ss_pred             ccccccCccceEEEEeCCC-CEEEEE-------EeecCCCcchHhHHHHHHHHHhC--CCCCccceEEEEEeCCeEEEEE
Q 011696          373 NLLGEGGFGSVYKGYLPDG-REVAIK-------QLKIGGGQGEREFKAEVEIISRI--HHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~~g-~~VAVK-------~l~~~~~~~~~~f~~Ei~il~~l--~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      +.||.|....||++...+| +.|+||       ++...-....+....|.+.|..+  .-+..|.-+-+| +.+..++||
T Consensus         1 ~EigdGnlN~VfrV~~~~g~~svIVKQAlp~vRv~g~~wpl~~~R~~~E~~~L~~~~~~~P~~vP~vy~~-D~e~~~~vM   79 (370)
T TIGR01767         1 QEVGDGNLNLVFHVYDQEGDRAAIVKQALPYVRVVGESWPLTLDRARIESSALIRQGEHVPHLVPRIFHF-DTEMAVTVM   79 (370)
T ss_pred             CcCCCCceEEEEEEEcCCCCeeEEEEEcCHHHhhcCCCCCCCccHHHHHHHHHHHhhccCccccCeEEEE-ccccceehH


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||+....+...---+.+..-++..++--.+..++.+
T Consensus        80 EdL~~~~ilR~~Li~g~~~p~~A~~iG~~La~tlf~  115 (370)
T TIGR01767        80 EDLSHHKIARKGLIEGENYPHLARHIGEFLAKTLFY  115 (370)
T ss_pred             hhCccchHHHHHHHcCCCChHHHHHHHHHHHHHHHh

This enzyme is involved in the methionine salvage pathway in certain bacteria.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	479
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		8e-19
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		2e-18
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		5e-13
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		5e-13
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		5e-11
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		5e-11
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		6e-11
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		6e-10
4asz_A	299	Crystal Structure Of Apo Trkb Kinase Domain Length		1e-06
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		1e-06
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		2e-06
4f1m_A	287	Crystal Structure Of The G1179s Roco4 Kinase Domain		2e-06
4f1o_A	287	Crystal Structure Of The L1180t Mutant Roco4 Kinase		2e-06
3bbt_B	328	Crystal Structure Of The Erbb4 Kinase In Complex Wi		2e-06
4gt5_A	306	Crystal Structure Of The Inactive Trka Kinase Domai		5e-06
4f0i_A	300	Crystal Structure Of Apo Trka Length = 300		5e-06
4aoj_A	329	Human Trka In Complex With The Inhibitor Az-23 Leng		5e-06
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		1e-05
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		1e-05
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		1e-05
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		1e-05
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		1e-05
3v5q_A	297	Discovery Of A Selective Trk Inhibitor With Efficac		2e-05
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		3e-05
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		4e-05
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		4e-05
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		5e-05
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		5e-05
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		5e-05
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		5e-05
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		5e-05
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		5e-05
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		5e-05
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		5e-05
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		5e-05
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		5e-05
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		5e-05
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		5e-05
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		5e-05
4bbe_A	298	Aminoalkylpyrimidine Inhibitor Complexes With Jak2		5e-05
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		5e-05
3ika_A	331	Crystal Structure Of Egfr 696-1022 T790m Mutant Cov		6e-05
4g5p_A	330	Crystal Structure Of Egfr Kinase T790m In Complex W		7e-05
2jiu_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		7e-05
2jiv_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		7e-05
2jit_A	327	Crystal Structure Of Egfr Kinase Domain T790m Mutat		7e-05
4i24_A	329	Structure Of T790m Egfr Kinase Domain Co-crystalliz		7e-05
3w2o_A	331	Egfr Kinase Domain T790m/l858r Mutant With Tak-285		8e-05
4i21_A	329	Crystal Structure Of L858r + T790m Egfr Kinase Doma		8e-05
4i1z_A	329	Crystal Structure Of The Monomeric (v948r) Form Of		8e-05
4hjo_A	337	Crystal Structure Of The Inactive Egfr Tyrosine Kin		1e-04
4g5j_A	330	Crystal Structure Of Egfr Kinase In Complex With Bi		1e-04
2j5f_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		1e-04
2gs2_A	330	Crystal Structure Of The Active Egfr Kinase Domain		1e-04
2j5e_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		1e-04
1m14_A	333	Tyrosine Kinase Domain From Epidermal Growth Factor		1e-04
2rfd_A	324	Crystal Structure Of The Complex Between The Egfr K		1e-04
3vjo_A	334	Crystal Structure Of The Wild-Type Egfr Kinase Doma		1e-04
3lzb_A	327	Egfr Kinase Domain Complexed With An Imidazo[2,1-B]		1e-04
2itt_A	327	Crystal Structure Of Egfr Kinase Domain L858r Mutat		1e-04
1xkk_A	352	Egfr Kinase Domain Complexed With A Quinazoline Inh		1e-04
4i23_A	329	Crystal Structure Of The Wild-type Egfr Kinase Doma		1e-04
3bel_A	315	X-Ray Structure Of Egfr In Complex With Oxime Inhib		1e-04
2gs7_A	330	Crystal Structure Of The Inactive Egfr Kinase Domai		1e-04
4e6d_A	298	Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W		1e-04
2eb3_A	334	Crystal Structure Of Mutated Egfr Kinase Domain (L8		1e-04
4i20_A	329	Crystal Structure Of Monomeric (v948r) Primary Onco		1e-04
3gop_A	361	Crystal Structure Of The Egf Receptor Juxtamembrane		1e-04
3gen_A	283	The 1.6 A Crystal Structure Of Human Bruton's Tyros		2e-04
3k54_A	283	Structures Of Human Bruton's Tyrosine Kinase In Act		2e-04
1fvr_A	327	Tie2 Kinase Domain Length = 327		2e-04
2wqb_A	324	Structure Of The Tie2 Kinase Domain In Complex With		2e-04
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		2e-04
3pix_A	274	Crystal Structure Of Btk Kinase Domain Complexed Wi		2e-04
4gt4_A	308	Structure Of Unliganded, Inactive Ror2 Kinase Domai		2e-04
3p08_A	267	Crystal Structure Of The Human Btk Kinase Domain Le		2e-04
1k2p_A	263	Crystal Structure Of Bruton's Tyrosine Kinase Domai		2e-04
3oct_A	265	Crystal Structure Of Bruton's Tyrosine Kinase Mutan		2e-04
3ocs_A	271	Crystal Structure Of Bruton's Tyrosine Kinase In Co		2e-04
3zzw_A	289	Crystal Structure Of The Kinase Domain Of Ror2 Leng		2e-04
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		2e-04
3ug1_A	334	Crystal Structure Of The Mutated Egfr Kinase Domain		3e-04
2ivv_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		3e-04
2ivt_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		3e-04
2ivs_A	314	Crystal Structure Of Non-Phosphorylated Ret Tyrosin		3e-04
2itn_A	327	Crystal Structure Of Egfr Kinase Domain G719s Mutat		4e-04
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		4e-04
2eb2_A	334	Crystal Structure Of Mutated Egfr Kinase Domain (G7		4e-04
3sxr_A	268	Crystal Structure Of Bmx Non-Receptor Tyrosine Kina		4e-04
4fnw_A	327	Crystal Structure Of The Apo F1174l Anaplastic Lymp		5e-04
2yjr_A	342	Structure Of F1174l Mutant Anaplastic Lymphoma Kina		5e-04
4e4l_A	302	Jak1 Kinase (Jh1 Domain) In Complex With Compound 3		6e-04
2yfx_A	327	Structure Of L1196m Mutant Anaplastic Lymphoma Kina		7e-04
2yhv_A	342	Structure Of L1196m Mutant Anaplastic Lymphoma Kina		7e-04
3eyg_A	290	Crystal Structures Of Jak1 And Jak2 Inhibitor Compl		7e-04
4fnx_A	327	Crystal Structure Of The Apo R1275q Anaplastic Lymp		7e-04
3l9p_A	367	Crystal Structure Of The Anaplastic Lymphoma Kinase		7e-04
3aox_A	344	X-Ray Crystal Structure Of Human Anaplastic Lymphom		7e-04
2xp2_A	327	Structure Of The Human Anaplastic Lymphoma Kinase I		7e-04
4dce_A	333	Crystal Structure Of Human Anaplastic Lymphoma Kina		7e-04
4fnz_A	327	Crystal Structure Of Human Anaplastic Lymphoma Kina		7e-04
2xb7_A	315	Structure Of Human Anaplastic Lymphoma Kinase In Co		8e-04
4fob_A	353	Crystal Structure Of Human Anaplastic Lymphoma Kina		8e-04
3lct_A	344	Crystal Structure Of The Anaplastic Lymphoma Kinase		8e-04
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		9e-04
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		9e-04

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 91.7 bits (226), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 336 PGSDFVNSP--QDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGRE 393
           P   F + P  +DP         F+  EL  A+D F+++N+LG GGFG VYKG L DG  
Sbjct: 5   PQDHFFDVPAEEDPEVHLGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTL 64
Query: 394 VAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL 450
           VA+K+LK    Q GE +F+ EVE+IS   HR+L+ L G+C++   RLL+Y Y+ N ++
Sbjct: 65  VAVKRLKEERXQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSV 122

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/111 (44%), Positives = 70/111 (63%), Gaps = 1/111 (0%)
Query: 341 VNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLK 400
           V + +DP         F+  EL  A+D F ++N+LG GGFG VYKG L DG  VA+K+LK
Sbjct: 4   VPAEEDPEVHLGQLKRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLK 63
Query: 401 IGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL 450
               Q GE +F+ EVE+IS   HR+L+ L G+C++   RLL+Y Y+ N ++
Sbjct: 64  EERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSV 114

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/96 (44%), Positives = 60/96 (62%)
Query: 361 ELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRI 420
           +L +AT+ F  + L+G G FG VYKG L DG +VA+K+      QG  EF+ E+E +S  
Sbjct: 33  DLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFC 92
Query: 421 HHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHG 456
            H HLVSL+G+C   +  +LIY Y+ N  L  HL+G
Sbjct: 93  RHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYG 128

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/96 (44%), Positives = 60/96 (62%)
Query: 361 ELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRI 420
           +L +AT+ F  + L+G G FG VYKG L DG +VA+K+      QG  EF+ E+E +S  
Sbjct: 33  DLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFC 92
Query: 421 HHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHG 456
            H HLVSL+G+C   +  +LIY Y+ N  L  HL+G
Sbjct: 93  RHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYG 128

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 62/104 (59%), Gaps = 11/104 (10%)
Query: 357 FTYEELVKATDGFADQ------NLLGEGGFGSVYKGYLPDGREVAIKQL----KIGGGQG 406
           F++ EL   T+ F ++      N +GEGGFG VYKGY+ +   VA+K+L     I   + 
Sbjct: 15  FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEEL 73
Query: 407 EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL 450
           +++F  E++++++  H +LV L+G+    D   L+Y Y+PN +L
Sbjct: 74  KQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSL 117

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 62/104 (59%), Gaps = 11/104 (10%)
Query: 357 FTYEELVKATDGFADQ------NLLGEGGFGSVYKGYLPDGREVAIKQL----KIGGGQG 406
           F++ EL   T+ F ++      N +GEGGFG VYKGY+ +   VA+K+L     I   + 
Sbjct: 9   FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEEL 67
Query: 407 EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL 450
           +++F  E++++++  H +LV L+G+    D   L+Y Y+PN +L
Sbjct: 68  KQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSL 111

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 62/104 (59%), Gaps = 11/104 (10%)
Query: 357 FTYEELVKATDGFADQ------NLLGEGGFGSVYKGYLPDGREVAIKQL----KIGGGQG 406
           F++ EL   T+ F ++      N +GEGGFG VYKGY+ +   VA+K+L     I   + 
Sbjct: 15  FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEEL 73
Query: 407 EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL 450
           +++F  E++++++  H +LV L+G+    D   L+Y Y+PN +L
Sbjct: 74  KQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSL 117

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 11/104 (10%)
Query: 357 FTYEELVKATDGFADQ------NLLGEGGFGSVYKGYLPDGREVAIKQL----KIGGGQG 406
           F++ EL   T+ F ++      N  GEGGFG VYKGY+ +   VA+K+L     I   + 
Sbjct: 6   FSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEEL 64
Query: 407 EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTL 450
           +++F  E+++ ++  H +LV L+G+    D   L+Y Y PN +L
Sbjct: 65  KQQFDQEIKVXAKCQHENLVELLGFSSDGDDLCLVYVYXPNGSL 108

>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain Length = 299

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSL 428
           LGEG FG V+           D   VA+K LK       ++F  E E+++ + H H+V  
Sbjct: 21  LGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKF 80
Query: 429 VGYCISDDRRLLIYDYVPNNTL--YFHLHG 456
            G C+  D  +++++Y+ +  L  +   HG
Sbjct: 81  YGVCVEGDPLIMVFEYMKHGDLNKFLRAHG 110

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 11/119 (9%)
Query: 343 SPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKG-YLPDGREV----AIK 397
            P  P G   +++      ++K T+      +LG G FG+VYKG ++P+G  V    AIK
Sbjct: 18  EPLTPSGTAPNQAQL---RILKETE-LKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIK 73
Query: 398 QL-KIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLH 455
            L +  G +   EF  E  I++ + H HLV L+G C+S   + L+   +P+  L  ++H
Sbjct: 74  ILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSPTIQ-LVTQLMPHGCLLEYVH 131

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 10/101 (9%)
Query: 365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGE-------REFKAEVEI 416
           A +    +  +G+GGFG V+KG L  D   VAIK L +G  +GE       +EF+ EV I
Sbjct: 17  ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 417 ISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGK 457
           +S ++H ++V L G   +  R  ++ ++VP   LY  L  K
Sbjct: 77  MSNLNHPNIVKLYGLMHNPPR--MVMEFVPCGDLYHRLLDK 115

>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 10/101 (9%)
Query: 365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGE-------REFKAEVEI 416
           A +    +  +G+GGFG V+KG L  D   VAIK L +G  +GE       +EF+ EV I
Sbjct: 17  ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 417 ISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGK 457
           +S ++H ++V L G   +  R  ++ ++VP   LY  L  K
Sbjct: 77  MSNLNHPNIVKLYGLMHNPPR--MVMEFVPCGDLYHRLLDK 115

>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 10/101 (9%)
Query: 365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGE-------REFKAEVEI 416
           A +    +  +G+GGFG V+KG L  D   VAIK L +G  +GE       +EF+ EV I
Sbjct: 17  ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 417 ISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGK 457
           +S ++H ++V L G   +  R  ++ ++VP   LY  L  K
Sbjct: 77  MSNLNHPNIVKLYGLMHNPPR--MVMEFVPCGDLYHRLLDK 115

>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With Lapatinib Length = 328

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 7/89 (7%)
Query: 373 NLLGEGGFGSVYKG-YLPDGREV----AIKQL-KIGGGQGEREFKAEVEIISRIHHRHLV 426
            +LG G FG+VYKG ++P+G  V    AIK L +  G +   EF  E  I++ + H HLV
Sbjct: 21  KVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLV 80
Query: 427 SLVGYCISDDRRLLIYDYVPNNTLYFHLH 455
            L+G C+S   + L+   +P+  L  ++H
Sbjct: 81  RLLGVCLSPTIQ-LVTQLMPHGCLLEYVH 108

>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 375 LGEGGFGSVY----KGYLP--DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSL 428
           LGEG FG V+       LP  D   VA+K LK       ++F+ E E+++ + H+H+V  
Sbjct: 26  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 85
Query: 429 VGYCISDDRRLLIYDYVPNNTL--YFHLHG 456
            G C      L++++Y+ +  L  +   HG
Sbjct: 86  FGVCTEGRPLLMVFEYMRHGDLNRFLRSHG 115

>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 375 LGEGGFGSVY----KGYLP--DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSL 428
           LGEG FG V+       LP  D   VA+K LK       ++F+ E E+++ + H+H+V  
Sbjct: 20  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 79
Query: 429 VGYCISDDRRLLIYDYVPNNTL--YFHLHG 456
            G C      L++++Y+ +  L  +   HG
Sbjct: 80  FGVCTEGRPLLMVFEYMRHGDLNRFLRSHG 109

>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 375 LGEGGFGSVY----KGYLP--DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSL 428
           LGEG FG V+       LP  D   VA+K LK       ++F+ E E+++ + H+H+V  
Sbjct: 49  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 108
Query: 429 VGYCISDDRRLLIYDYVPNNTL--YFHLHG 456
            G C      L++++Y+ +  L  +   HG
Sbjct: 109 FGVCTEGRPLLMVFEYMRHGDLNRFLRSHG 138

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           +G G FG V+ GY  +  +VAIK +K  G   E +F  E E++ ++ H  LV L G C+ 
Sbjct: 35  IGSGQFGLVHLGYWLNKDKVAIKTIK-EGSMSEDDFIEEAEVMMKLSHPKLVQLYGVCLE 93
Query: 435 DDRRLLIYDYVPNNTLYFHLHGK 457
                L+++++ +  L  +L  +
Sbjct: 94  QAPICLVFEFMEHGCLSDYLRTQ 116

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           +G G FG V+ GY  +  +VAIK ++  G   E +F  E E++ ++ H  LV L G C+ 
Sbjct: 15  IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 73
Query: 435 DDRRLLIYDYVPNNTLYFHLHGK 457
                L+++++ +  L  +L  +
Sbjct: 74  QAPICLVFEFMEHGCLSDYLRTQ 96

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           +G G FG V+ GY  +  +VAIK ++  G   E +F  E E++ ++ H  LV L G C+ 
Sbjct: 13  IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 71
Query: 435 DDRRLLIYDYVPNNTLYFHLHGK 457
                L+++++ +  L  +L  +
Sbjct: 72  QAPICLVFEFMEHGCLSDYLRTQ 94

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           +G G FG V+ GY  +  +VAIK ++  G   E +F  E E++ ++ H  LV L G C+ 
Sbjct: 15  IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 73
Query: 435 DDRRLLIYDYVPNNTLYFHLHGK 457
                L+++++ +  L  +L  +
Sbjct: 74  QAPICLVFEFMEHGCLSDYLRTQ 96

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           +G G FG V+ GY  +  +VAIK ++  G   E +F  E E++ ++ H  LV L G C+ 
Sbjct: 18  IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 76
Query: 435 DDRRLLIYDYVPNNTLYFHLHGK 457
                L+++++ +  L  +L  +
Sbjct: 77  QAPICLVFEFMEHGCLSDYLRTQ 99

>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSL 428
           LGEG FG V+           D   VA+K LK       ++F+ E E+++ + H H+V  
Sbjct: 23  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKF 82
Query: 429 VGYCISDDRRLLIYDYVPNNTL--YFHLHG 456
            G C   D  +++++Y+ +  L  +   HG
Sbjct: 83  YGVCGDGDPLIMVFEYMKHGDLNKFLRAHG 112

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 9/92 (9%)
Query: 375 LGEGGFGSVYKG-YLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P     G  VA+K+L+    +  R+F+ E+EI+  + H ++V   
Sbjct: 21  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 80
Query: 430 GYCISDDRR--LLIYDYVPNNTL--YFHLHGK 457
           G C S  RR   LI +Y+P  +L  Y   H +
Sbjct: 81  GVCYSAGRRNLKLIMEYLPYGSLRDYLQAHAE 112

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           +G G FG V+ GY  +  +VAIK ++  G   E +F  E E++ ++ H  LV L G C+ 
Sbjct: 16  IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 74
Query: 435 DDRRLLIYDYVPNNTLYFHLHGK 457
                L+ +++ +  L  +L  +
Sbjct: 75  QAPICLVTEFMEHGCLSDYLRTQ 97

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 375 LGEGGFGSVYKG-YLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P     G  VA+K+L+    +  R+F+ E+EI+  + H ++V   
Sbjct: 49  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 108
Query: 430 GYCISDDRR--LLIYDYVPNNTLYFHLH 455
           G C S  RR   LI +Y+P  +L  +L 
Sbjct: 109 GVCYSAGRRNLKLIMEYLPYGSLRDYLQ 136

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 375 LGEGGFGSVYKG-YLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P     G  VA+K+L+    +  R+F+ E+EI+  + H ++V   
Sbjct: 21  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 80
Query: 430 GYCISDDRR--LLIYDYVPNNTLYFHLH 455
           G C S  RR   LI +Y+P  +L  +L 
Sbjct: 81  GVCYSAGRRNLKLIMEYLPYGSLRDYLQ 108

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 375 LGEGGFGSVYKG-YLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P     G  VA+K+L+    +  R+F+ E+EI+  + H ++V   
Sbjct: 23  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 82
Query: 430 GYCISDDRR--LLIYDYVPNNTLYFHLH 455
           G C S  RR   LI +Y+P  +L  +L 
Sbjct: 83  GVCYSAGRRNLKLIMEYLPYGSLRDYLQ 110

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 375 LGEGGFGSVYKG-YLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P     G  VA+K+L+    +  R+F+ E+EI+  + H ++V   
Sbjct: 18  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77
Query: 430 GYCISDDRR--LLIYDYVPNNTLYFHLH 455
           G C S  RR   LI +Y+P  +L  +L 
Sbjct: 78  GVCYSAGRRNLKLIMEYLPYGSLRDYLQ 105

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 7/97 (7%)
Query: 372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGERE-FKAEVEIISRIHHRHLVSLVG 430
           + ++G G FG V K      ++VAIKQ++    + ER+ F  E+  +SR++H ++V L G
Sbjct: 14  EEVVGRGAFGVVCKAKW-RAKDVAIKQIE---SESERKAFIVELRQLSRVNHPNIVKLYG 69
Query: 431 YCISDDRRLLIYDYVPNNTLYFHLHGKWQLGFDIRNH 467
            C+  +   L+ +Y    +LY  LHG   L +    H
Sbjct: 70  ACL--NPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAH 104

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 375 LGEGGFGSVYKG-YLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P     G  VA+K+L+    +  R+F+ E+EI+  + H ++V   
Sbjct: 25  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 84
Query: 430 GYCISDDRR--LLIYDYVPNNTLYFHLH 455
           G C S  RR   LI +Y+P  +L  +L 
Sbjct: 85  GVCYSAGRRNLKLIMEYLPYGSLRDYLQ 112

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 375 LGEGGFGSVYKG-YLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P     G  VA+K+L+    +  R+F+ E+EI+  + H ++V   
Sbjct: 36  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 95
Query: 430 GYCISDDRR--LLIYDYVPNNTLYFHLH 455
           G C S  RR   LI +Y+P  +L  +L 
Sbjct: 96  GVCYSAGRRNLKLIMEYLPYGSLRDYLQ 123

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 375 LGEGGFGSVYKG-YLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P     G  VA+K+L+    +  R+F+ E+EI+  + H ++V   
Sbjct: 18  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77
Query: 430 GYCISDDRR--LLIYDYVPNNTLYFHLH 455
           G C S  RR   LI +Y+P  +L  +L 
Sbjct: 78  GVCYSAGRRNLKLIMEYLPYGSLRDYLQ 105

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 375 LGEGGFGSVYKG-YLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P     G  VA+K+L+    +  R+F+ E+EI+  + H ++V   
Sbjct: 22  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 81
Query: 430 GYCISDDRR--LLIYDYVPNNTLYFHLH 455
           G C S  RR   LI +Y+P  +L  +L 
Sbjct: 82  GVCYSAGRRNLKLIMEYLPYGSLRDYLQ 109

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 375 LGEGGFGSVYKG-YLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P     G  VA+K+L+    +  R+F+ E+EI+  + H ++V   
Sbjct: 16  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 75
Query: 430 GYCISDDRR--LLIYDYVPNNTLYFHLH 455
           G C S  RR   LI +Y+P  +L  +L 
Sbjct: 76  GVCYSAGRRNLKLIMEYLPYGSLRDYLQ 103

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 375 LGEGGFGSVYKG-YLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P     G  VA+K+L+    +  R+F+ E+EI+  + H ++V   
Sbjct: 24  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 83
Query: 430 GYCISDDRR--LLIYDYVPNNTLYFHLH 455
           G C S  RR   LI +Y+P  +L  +L 
Sbjct: 84  GVCYSAGRRNLKLIMEYLPYGSLRDYLQ 111

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 375 LGEGGFGSVYKG-YLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P     G  VA+K+L+    +  R+F+ E+EI+  + H ++V   
Sbjct: 18  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77
Query: 430 GYCISDDRR--LLIYDYVPNNTLYFHLH 455
           G C S  RR   LI +Y+P  +L  +L 
Sbjct: 78  GVCYSAGRRNLKLIMEYLPYGSLRDYLQ 105

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 375 LGEGGFGSVYKG-YLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P     G  VA+K+L+    +  R+F+ E+EI+  + H ++V   
Sbjct: 36  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 95
Query: 430 GYCISDDRR--LLIYDYVPNNTLYFHLH 455
           G C S  RR   LI +Y+P  +L  +L 
Sbjct: 96  GVCYSAGRRNLKLIMEYLPYGSLRDYLQ 123

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 375 LGEGGFGSVYKG-YLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P     G  VA+K+L+    +  R+F+ E+EI+  + H ++V   
Sbjct: 17  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 76
Query: 430 GYCISDDRR--LLIYDYVPNNTLYFHLH 455
           G C S  RR   LI +Y+P  +L  +L 
Sbjct: 77  GVCYSAGRRNLKLIMEYLPYGSLRDYLQ 104

>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 375 LGEGGFGSVYKG-YLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P     G  VA+K+L+    +  R+F+ E+EI+  + H ++V   
Sbjct: 19  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 78
Query: 430 GYCISDDRR--LLIYDYVPNNTLYFHLH 455
           G C S  RR   LI +Y+P  +L  +L 
Sbjct: 79  GVCYSAGRRNLKLIMEYLPYGSLRDYLQ 106

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 7/97 (7%)
Query: 372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGERE-FKAEVEIISRIHHRHLVSLVG 430
           + ++G G FG V K      ++VAIKQ++    + ER+ F  E+  +SR++H ++V L G
Sbjct: 13  EEVVGRGAFGVVCKAKW-RAKDVAIKQIE---SESERKAFIVELRQLSRVNHPNIVKLYG 68
Query: 431 YCISDDRRLLIYDYVPNNTLYFHLHGKWQLGFDIRNH 467
            C+  +   L+ +Y    +LY  LHG   L +    H
Sbjct: 69  ACL--NPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAH 103

>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently Binding To Wz4002 Length = 331

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 57/101 (56%), Gaps = 10/101 (9%)
Query: 347 PGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKI 401
           P G   ++++     ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+ 
Sbjct: 3   PSGEAPNQALL---RILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELRE 58
Query: 402 GGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI 441
               +  +E   E  +++ + + H+  L+G C++   +L++
Sbjct: 59  ATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLIM 99

>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 51/86 (59%), Gaps = 7/86 (8%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 14  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 72
Query: 416 IISRIHHRHLVSLVGYCISDDRRLLI 441
           +++ + + H+  L+G C++   +L++
Sbjct: 73  VMASVDNPHVCRLLGICLTSTVQLIM 98

>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Complex With Aee788 Length = 328

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 51/86 (59%), Gaps = 7/86 (8%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 12  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 70
Query: 416 IISRIHHRHLVSLVGYCISDDRRLLI 441
           +++ + + H+  L+G C++   +L++
Sbjct: 71  VMASVDNPHVCRLLGICLTSTVQLIM 96

>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Compex With Hki-272 Length = 328

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 51/86 (59%), Gaps = 7/86 (8%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 12  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 70
Query: 416 IISRIHHRHLVSLVGYCISDDRRLLI 441
           +++ + + H+  L+G C++   +L++
Sbjct: 71  VMASVDNPHVCRLLGICLTSTVQLIM 96

>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation Length = 327

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 51/86 (59%), Gaps = 7/86 (8%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 11  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 69
Query: 416 IISRIHHRHLVSLVGYCISDDRRLLI 441
           +++ + + H+  L+G C++   +L++
Sbjct: 70  VMASVDNPHVCRLLGICLTSTVQLIM 95

>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With Dacomitinib Length = 329

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 51/86 (59%), Gaps = 7/86 (8%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 13  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 71
Query: 416 IISRIHHRHLVSLVGYCISDDRRLLI 441
           +++ + + H+  L+G C++   +L++
Sbjct: 72  VMASVDNPHVCRLLGICLTSTVQLIM 97

>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285 Length = 331

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 51/86 (59%), Gaps = 7/86 (8%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 15  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 73
Query: 416 IISRIHHRHLVSLVGYCISDDRRLLI 441
           +++ + + H+  L+G C++   +L++
Sbjct: 74  VMASVDNPHVCRLLGICLTSTVQLIM 99

>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In Complex With Mig6 Peptide Length = 329

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 51/86 (59%), Gaps = 7/86 (8%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 13  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 71
Query: 416 IISRIHHRHLVSLVGYCISDDRRLLI 441
           +++ + + H+  L+G C++   +L++
Sbjct: 72  VMASVDNPHVCRLLGICLTSTVQLIM 97

>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The Gefitinib/erlotinib Resistant Egfr Kinase Domain L858r+t790m Length = 329

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 51/86 (59%), Gaps = 7/86 (8%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 13  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 71
Query: 416 IISRIHHRHLVSLVGYCISDDRRLLI 441
           +++ + + H+  L+G C++   +L++
Sbjct: 72  VMASVDNPHVCRLLGICLTSTVQLIM 97

>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase Domain With Erlotinib Length = 337

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 21  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 79
Query: 416 IISRIHHRHLVSLVGYCISDDRRLL 440
           +++ + + H+  L+G C++   +L+
Sbjct: 80  VMASVDNPHVCRLLGICLTSTVQLI 104

>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 14  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 72
Query: 416 IISRIHHRHLVSLVGYCISDDRRLL 440
           +++ + + H+  L+G C++   +L+
Sbjct: 73  VMASVDNPHVCRLLGICLTSTVQLI 97

>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 34-Jab Length = 327

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 11  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 69
Query: 416 IISRIHHRHLVSLVGYCISDDRRLL 440
           +++ + + H+  L+G C++   +L+
Sbjct: 70  VMASVDNPHVCRLLGICLTSTVQLI 94

>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain Length = 330

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 14  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 72
Query: 416 IISRIHHRHLVSLVGYCISDDRRLL 440
           +++ + + H+  L+G C++   +L+
Sbjct: 73  VMASVDNPHVCRLLGICLTSTVQLI 97

>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 13-Jab Length = 327

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 11  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 69
Query: 416 IISRIHHRHLVSLVGYCISDDRRLL 440
           +++ + + H+  L+G C++   +L+
Sbjct: 70  VMASVDNPHVCRLLGICLTSTVQLI 94

>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor Receptor Length = 333

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 17  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 75
Query: 416 IISRIHHRHLVSLVGYCISDDRRLL 440
           +++ + + H+  L+G C++   +L+
Sbjct: 76  VMASVDNPHVCRLLGICLTSTVQLI 100

>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase Domain And A Mig6 Peptide Length = 324

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 8   ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 66
Query: 416 IISRIHHRHLVSLVGYCISDDRRLL 440
           +++ + + H+  L+G C++   +L+
Sbjct: 67  VMASVDNPHVCRLLGICLTSTVQLI 91

>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In Complex With Amppnp Length = 334

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 18  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 76
Query: 416 IISRIHHRHLVSLVGYCISDDRRLL 440
           +++ + + H+  L+G C++   +L+
Sbjct: 77  VMASVDNPHVCRLLGICLTSTVQLI 101

>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An Imidazo[2,1-B]thiazole Inhibitor Length = 327

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 11  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 69
Query: 416 IISRIHHRHLVSLVGYCISDDRRLL 440
           +++ + + H+  L+G C++   +L+
Sbjct: 70  VMASVDNPHVCRLLGICLTSTVQLI 94

>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In Complex With Aee788 Length = 327

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 11  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 69
Query: 416 IISRIHHRHLVSLVGYCISDDRRLL 440
           +++ + + H+  L+G C++   +L+
Sbjct: 70  VMASVDNPHVCRLLGICLTSTVQLI 94

>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor- Gw572016 Length = 352

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 36  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 94
Query: 416 IISRIHHRHLVSLVGYCISDDRRLL 440
           +++ + + H+  L+G C++   +L+
Sbjct: 95  VMASVDNPHVCRLLGICLTSTVQLI 119

>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In Complex With Dacomitinib (soaked) Length = 329

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 13  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 71
Query: 416 IISRIHHRHLVSLVGYCISDDRRLL 440
           +++ + + H+  L+G C++   +L+
Sbjct: 72  VMASVDNPHVCRLLGICLTSTVQLI 96

>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor Length = 315

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 5   ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 63
Query: 416 IISRIHHRHLVSLVGYCISDDRRLL 440
           +++ + + H+  L+G C++   +L+
Sbjct: 64  VMASVDNPHVCRLLGICLTSTVQLI 88

>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In Complex With Amp-Pnp Length = 330

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 14  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 72
Query: 416 IISRIHHRHLVSLVGYCISDDRRLL 440
           +++ + + H+  L+G C++   +L+
Sbjct: 73  VMASVDNPHVCRLLGICLTSTVQLI 97

>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 375 LGEGGFGSVYKG-YLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P     G  VA+K+L+    +  R+F+ E+EI+  + H ++V   
Sbjct: 21  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 80
Query: 430 GYCISDDRR--LLIYDYVPNNTLYFHLH 455
           G C S  RR   LI +++P  +L  +L 
Sbjct: 81  GVCYSAGRRNLKLIMEFLPYGSLREYLQ 108

>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In Complex With Amppnp Length = 334

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 18  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 76
Query: 416 IISRIHHRHLVSLVGYCISDDRRLL 440
           +++ + + H+  L+G C++   +L+
Sbjct: 77  VMASVDNPHVCRLLGICLTSTVQLI 101

>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic Mutant L858r Egfr Kinase Domain Length = 329

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 13  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 71
Query: 416 IISRIHHRHLVSLVGYCISDDRRLL 440
           +++ + + H+  L+G C++   +L+
Sbjct: 72  VMASVDNPHVCRLLGICLTSTVQLI 96

>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And Kinase Domains Length = 361

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 56/104 (53%), Gaps = 10/104 (9%)
Query: 343 SPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIK 397
            P  P G   ++++     ++K T+ F    +LG G FG+VYKG ++P+G +    VAI 
Sbjct: 29  EPLTPSGEAPNQALL---RILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIM 84
Query: 398 QLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL 440
           +L+     +  +E   E  +++ + + H+  L+G C++   +L+
Sbjct: 85  ELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLI 128

>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V  G      +VAIK +K  G   E EF  E +++  + H  LV L G C  
Sbjct: 32  LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK 90
Query: 435 DDRRLLIYDYVPNNTLYFHL 454
                +I +Y+ N  L  +L
Sbjct: 91  QRPIFIITEYMANGCLLNYL 110

>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And Inactive Conformations Suggests A Mechanism Of Activation For Tec Family Kinases Length = 283

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V  G      +VAIK +K  G   E EF  E +++  + H  LV L G C  
Sbjct: 32  LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK 90
Query: 435 DDRRLLIYDYVPNNTLYFHL 454
                +I +Y+ N  L  +L
Sbjct: 91  QRPIFIITEYMANGCLLNYL 110

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 372 QNLLGEGGFGSVYKGYLP-DG--REVAIKQLKIGGGQGE-REFKAEVEIISRI-HHRHLV 426
           Q+++GEG FG V K  +  DG   + AIK++K    + + R+F  E+E++ ++ HH +++
Sbjct: 30  QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNII 89
Query: 427 SLVGYCISDDRRLLIYDYVPNNTL 450
           +L+G C       L  +Y P+  L
Sbjct: 90  NLLGACEHRGYLYLAIEYAPHGNL 113

>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 372 QNLLGEGGFGSVYKGYLP-DG--REVAIKQLKIGGGQGE-REFKAEVEIISRI-HHRHLV 426
           Q+++GEG FG V K  +  DG   + AIK++K    + + R+F  E+E++ ++ HH +++
Sbjct: 27  QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNII 86
Query: 427 SLVGYCISDDRRLLIYDYVPNNTL 450
           +L+G C       L  +Y P+  L
Sbjct: 87  NLLGACEHRGYLYLAIEYAPHGNL 110

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 372 QNLLGEGGFGSVYKGYLP-DG--REVAIKQLKIGGGQGE-REFKAEVEIISRI-HHRHLV 426
           Q+++GEG FG V K  +  DG   + AIK++K    + + R+F  E+E++ ++ HH +++
Sbjct: 20  QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNII 79
Query: 427 SLVGYCISDDRRLLIYDYVPNNTL 450
           +L+G C       L  +Y P+  L
Sbjct: 80  NLLGACEHRGYLYLAIEYAPHGNL 103

>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V  G      +VAIK +K  G   E EF  E +++  + H  LV L G C  
Sbjct: 23  LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK 81
Query: 435 DDRRLLIYDYVPNNTLYFHL 454
                +I +Y+ N  L  +L
Sbjct: 82  QRPIFIITEYMANGCLLNYL 101

>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain Length = 308

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVS 427
           LGE  FG VYKG+L         + VAIK LK    G    EF+ E  + +R+ H ++V 
Sbjct: 34  LGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVC 93
Query: 428 LVGYCISDDRRLLIYDYVPNNTLY 451
           L+G    D    +I+ Y  +  L+
Sbjct: 94  LLGVVTKDQPLSMIFSYCSHGDLH 117

>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V  G      +VAIK +K  G   E EF  E +++  + H  LV L G C  
Sbjct: 16  LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK 74
Query: 435 DDRRLLIYDYVPNNTLYFHL 454
                +I +Y+ N  L  +L
Sbjct: 75  QRPIFIITEYMANGCLLNYL 94

>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain Length = 263

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V  G      +VAIK +K  G   E EF  E +++  + H  LV L G C  
Sbjct: 12  LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK 70
Query: 435 DDRRLLIYDYVPNNTLYFHL 454
                +I +Y+ N  L  +L
Sbjct: 71  QRPIFIITEYMANGCLLNYL 90

>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V  G      +VAIK +K  G   E EF  E +++  + H  LV L G C  
Sbjct: 17  LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK 75
Query: 435 DDRRLLIYDYVPNNTLYFHL 454
                +I +Y+ N  L  +L
Sbjct: 76  QRPIFIITEYMANGCLLNYL 95

>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V  G      +VAIK +K  G   E EF  E +++  + H  LV L G C  
Sbjct: 17  LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK 75
Query: 435 DDRRLLIYDYVPNNTLYFHL 454
                +I +Y+ N  L  +L
Sbjct: 76  QRPIFIITEYMANGCLLNYL 95

>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2 Length = 289

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVS 427
           LGE  FG VYKG+L         + VAIK LK    G    EF+ E  + +R+ H ++V 
Sbjct: 17  LGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVC 76
Query: 428 LVGYCISDDRRLLIYDYVPNNTLY 451
           L+G    D    +I+ Y  +  L+
Sbjct: 77  LLGVVTKDQPLSMIFSYCSHGDLH 100

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGE--REFKAEVEIISRIHHRHLVSLVGYC 432
           +G G FG+VYKG      +VA+K LK+     E  + F+ EV ++ +  H +++  +GY 
Sbjct: 44  IGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGY- 100
Query: 433 ISDDRRLLIYDYVPNNTLYFHLH 455
           ++ D   ++  +   ++LY HLH
Sbjct: 101 MTKDNLAIVTQWCEGSSLYKHLH 123

>pdb|3UG1|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain (G719sT790M) IN The Apo Form Length = 334

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 50/86 (58%), Gaps = 7/86 (8%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +L  G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 18  ILKETE-FKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 76
Query: 416 IISRIHHRHLVSLVGYCISDDRRLLI 441
           +++ + + H+  L+G C++   +L++
Sbjct: 77  VMASVDNPHVCRLLGICLTSTVQLIM 102

>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Complexed With The Inhibitor Pp1 Length = 314

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 375 LGEGGFGSVYKG--YLPDGRE----VAIKQLKIGGGQGE-REFKAEVEIISRIHHRHLVS 427
           LGEG FG V K   +   GR     VA+K LK      E R+  +E  ++ +++H H++ 
Sbjct: 31  LGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIK 90
Query: 428 LVGYCISDDRRLLIYDYVPNNTL 450
           L G C  D   LLI +Y    +L
Sbjct: 91  LYGACSQDGPLLLIVEYAKYGSL 113

>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 375 LGEGGFGSVYKG--YLPDGRE----VAIKQLKIGGGQGE-REFKAEVEIISRIHHRHLVS 427
           LGEG FG V K   +   GR     VA+K LK      E R+  +E  ++ +++H H++ 
Sbjct: 31  LGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIK 90
Query: 428 LVGYCISDDRRLLIYDYVPNNTL 450
           L G C  D   LLI +Y    +L
Sbjct: 91  LYGACSQDGPLLLIVEYAKYGSL 113

>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 375 LGEGGFGSVYKG--YLPDGRE----VAIKQLKIGGGQGE-REFKAEVEIISRIHHRHLVS 427
           LGEG FG V K   +   GR     VA+K LK      E R+  +E  ++ +++H H++ 
Sbjct: 31  LGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIK 90
Query: 428 LVGYCISDDRRLLIYDYVPNNTL 450
           L G C  D   LLI +Y    +L
Sbjct: 91  LYGACSQDGPLLLIVEYAKYGSL 113

>pdb|2ITN|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In Complex With Amp-Pnp Length = 327

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 49/85 (57%), Gaps = 7/85 (8%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +L  G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 11  ILKETE-FKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 69
Query: 416 IISRIHHRHLVSLVGYCISDDRRLL 440
           +++ + + H+  L+G C++   +L+
Sbjct: 70  VMASVDNPHVCRLLGICLTSTVQLI 94

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 372 QNLLGEGGFGSVYKGYL--PDGRE---VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHL 425
           Q ++G G FG VYKG L    G++   VAIK LK G  + +R +F  E  I+ +  H ++
Sbjct: 49  QKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNI 108
Query: 426 VSLVGYCISDDRRLLIYDYVPNNTLYFHLHGK 457
           + L G        ++I +Y+ N  L   L  K
Sbjct: 109 IRLEGVISKYKPMMIITEYMENGALDKFLREK 140

>pdb|2EB2|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (G719s) Length = 334

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 49/85 (57%), Gaps = 7/85 (8%)
Query: 362 LVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGG-QGEREFKAEVE 415
           ++K T+ F    +L  G FG+VYKG ++P+G +    VAIK+L+     +  +E   E  
Sbjct: 18  ILKETE-FKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 76
Query: 416 IISRIHHRHLVSLVGYCISDDRRLL 440
           +++ + + H+  L+G C++   +L+
Sbjct: 77  VMASVDNPHVCRLLGICLTSTVQLI 101

>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V  G      +VA+K +K  G   E EF  E + + ++ H  LV   G C  
Sbjct: 16  LGSGQFGVVKLGKWKGQYDVAVKMIK-EGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCSK 74
Query: 435 DDRRLLIYDYVPNNTL--YFHLHGK 457
           +    ++ +Y+ N  L  Y   HGK
Sbjct: 75  EYPIYIVTEYISNGCLLNYLRSHGK 99

>pdb|4FNW|A Chain A, Crystal Structure Of The Apo F1174l Anaplastic Lymphoma Kinase Catalytic Domain Length = 327

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQL-KIGGGQGEREFKAEVEIISRIHHRHLVS 427
           LG G FG VY+G +      P   +VA+K L ++   Q E +F  E  IIS+++H+++V 
Sbjct: 39  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKLNHQNIVR 98
Query: 428 LVGYCISDDRRLLIYD 443
            +G  +    R ++ +
Sbjct: 99  CIGVSLQSLPRFILLE 114

>pdb|2YJR|A Chain A, Structure Of F1174l Mutant Anaplastic Lymphoma Kinase Length = 342

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQL-KIGGGQGEREFKAEVEIISRIHHRHLVS 427
           LG G FG VY+G +      P   +VA+K L ++   Q E +F  E  IIS+++H+++V 
Sbjct: 53  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKLNHQNIVR 112
Query: 428 LVGYCISDDRRLLIYD 443
            +G  +    R ++ +
Sbjct: 113 CIGVSLQSLPRFILLE 128

>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 375 LGEGGFGSV-YKGYLPDG----REVAIKQLK-IGGGQGEREFKAEVEIISRIHHRHLVSL 428
           LGEG FG V    Y P+G     +VA+K LK   GG    + K E+EI+  ++H ++V  
Sbjct: 29  LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKY 88
Query: 429 VGYCISD--DRRLLIYDYVPNNTLYFHL 454
            G C  D  +   LI +++P+ +L  +L
Sbjct: 89  KGICTEDGGNGIKLIMEFLPSGSLKEYL 116

>pdb|2YFX|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase In Complex With Crizotinib Length = 327

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQL-KIGGGQGEREFKAEVEIISRIHHRHLVS 427
           LG G FG VY+G +      P   +VA+K L ++   Q E +F  E  IIS+ +H+++V 
Sbjct: 38  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 97
Query: 428 LVGYCISDDRRLLIYD 443
            +G  +    R ++ +
Sbjct: 98  CIGVSLQSLPRFILME 113

>pdb|2YHV|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase Length = 342

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQL-KIGGGQGEREFKAEVEIISRIHHRHLVS 427
           LG G FG VY+G +      P   +VA+K L ++   Q E +F  E  IIS+ +H+++V 
Sbjct: 53  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 112
Query: 428 LVGYCISDDRRLLIYD 443
            +G  +    R ++ +
Sbjct: 113 CIGVSLQSLPRFILME 128

>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes Length = 290

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 375 LGEGGFGSV-YKGYLPDG----REVAIKQLK-IGGGQGEREFKAEVEIISRIHHRHLVSL 428
           LGEG FG V    Y P+G     +VA+K LK   GG    + K E+EI+  ++H ++V  
Sbjct: 17  LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKY 76
Query: 429 VGYCISD--DRRLLIYDYVPNNTLYFHL 454
            G C  D  +   LI +++P+ +L  +L
Sbjct: 77  KGICTEDGGNGIKLIMEFLPSGSLKEYL 104

>pdb|4FNX|A Chain A, Crystal Structure Of The Apo R1275q Anaplastic Lymphoma Kinase Catalytic Domain Length = 327

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQL-KIGGGQGEREFKAEVEIISRIHHRHLVS 427
           LG G FG VY+G +      P   +VA+K L ++   Q E +F  E  IIS+ +H+++V 
Sbjct: 39  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 98
Query: 428 LVGYCISDDRRLLIYD 443
            +G  +    R ++ +
Sbjct: 99  CIGVSLQSLPRFILLE 114

>pdb|3L9P|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase Catalytic Domain Length = 367

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQL-KIGGGQGEREFKAEVEIISRIHHRHLVS 427
           LG G FG VY+G +      P   +VA+K L ++   Q E +F  E  IIS+ +H+++V 
Sbjct: 79  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 138
Query: 428 LVGYCISDDRRLLIYD 443
            +G  +    R ++ +
Sbjct: 139 CIGVSLQSLPRFILLE 154

>pdb|3AOX|A Chain A, X-Ray Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Ch5424802 Length = 344

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQL-KIGGGQGEREFKAEVEIISRIHHRHLVS 427
           LG G FG VY+G +      P   +VA+K L ++   Q E +F  E  IIS+ +H+++V 
Sbjct: 55  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 114
Query: 428 LVGYCISDDRRLLIYD 443
            +G  +    R ++ +
Sbjct: 115 CIGVSLQSLPRFILLE 130

>pdb|2XP2|A Chain A, Structure Of The Human Anaplastic Lymphoma Kinase In Complex With Crizotinib (Pf-02341066) Length = 327

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQL-KIGGGQGEREFKAEVEIISRIHHRHLVS 427
           LG G FG VY+G +      P   +VA+K L ++   Q E +F  E  IIS+ +H+++V 
Sbjct: 38  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 97
Query: 428 LVGYCISDDRRLLIYD 443
            +G  +    R ++ +
Sbjct: 98  CIGVSLQSLPRFILLE 113

>pdb|4DCE|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With A Piperidine-Carboxamide Inhibitor Length = 333

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQL-KIGGGQGEREFKAEVEIISRIHHRHLVS 427
           LG G FG VY+G +      P   +VA+K L ++   Q E +F  E  IIS+ +H+++V 
Sbjct: 45  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 104
Query: 428 LVGYCISDDRRLLIYD 443
            +G  +    R ++ +
Sbjct: 105 CIGVSLQSLPRFILLE 120

>pdb|4FNZ|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Piperidine-Carboxamide Inhibitor 2 Length = 327

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQL-KIGGGQGEREFKAEVEIISRIHHRHLVS 427
           LG G FG VY+G +      P   +VA+K L ++   Q E +F  E  IIS+ +H+++V 
Sbjct: 39  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 98
Query: 428 LVGYCISDDRRLLIYD 443
            +G  +    R ++ +
Sbjct: 99  CIGVSLQSLPRFILLE 114

>pdb|2XB7|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex With Nvp- Tae684 Length = 315

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQL-KIGGGQGEREFKAEVEIISRIHHRHLVS 427
           LG G FG VY+G +      P   +VA+K L ++   Q E +F  E  IIS+ +H+++V 
Sbjct: 30  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 89
Query: 428 LVGYCISDDRRLLIYD 443
            +G  +    R ++ +
Sbjct: 90  CIGVSLQSLPRFILLE 105

>pdb|4FOB|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Acyliminobenzimidazole Inhibitor 1 Length = 353

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQL-KIGGGQGEREFKAEVEIISRIHHRHLVS 427
           LG G FG VY+G +      P   +VA+K L ++   Q E +F  E  IIS+ +H+++V 
Sbjct: 65  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 124
Query: 428 LVGYCISDDRRLLIYD 443
            +G  +    R ++ +
Sbjct: 125 CIGVSLQSLPRFILLE 140

>pdb|3LCT|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase Catalytic Domain Length = 344

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQL-KIGGGQGEREFKAEVEIISRIHHRHLVS 427
           LG G FG VY+G +      P   +VA+K L ++   Q E +F  E  IIS+ +H+++V 
Sbjct: 56  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 115
Query: 428 LVGYCISDDRRLLIYD 443
            +G  +    R ++ +
Sbjct: 116 CIGVSLQSLPRFILLE 131

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V+ GY     +VA+K LK  G      F AE  ++ ++ H+ LV L    ++
Sbjct: 30  LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYA-VVT 87
Query: 435 DDRRLLIYDYVPNNTL 450
            +   +I +Y+ N +L
Sbjct: 88  QEPIYIITEYMENGSL 103

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG+G FG V+ G       VAIK LK G    E  F  E +++ +I H  LV L    +S
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPE-AFLQEAQVMKKIRHEKLVQLYA-VVS 83
Query: 435 DDRRLLIYDYVPNNTLYFHLHGK 457
           ++   ++ +Y+   +L   L G+
Sbjct: 84  EEPIYIVTEYMSKGSLLDFLKGE 106

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	479
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	5e-69
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	1e-65
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	1e-57
3soc_A	322	Activin receptor type-2A; structural genomics cons	8e-28
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	3e-24
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	8e-23
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	8e-21
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	4e-20
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	6e-20
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	2e-14
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	8e-07
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	7e-23
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	2e-21
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	5e-21
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	8e-18
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	1e-15
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	4e-21
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	7e-18
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	1e-17
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-17
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-16
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-16
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	7e-16
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-15
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-13
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-04
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	1e-16
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	2e-16
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	9e-16
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	1e-15
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	1e-15
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	2e-15
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	2e-15
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-15
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	9e-14
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	4e-13
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-12
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	1e-11
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	2e-09
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	5e-15
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	6e-15
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	7e-15
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	2e-14
3q4u_A	301	Activin receptor type-1; structural genomics conso	7e-14
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	9e-14
4aoj_A	329	High affinity nerve growth factor receptor; transf	9e-14
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	1e-13
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	1e-13
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	1e-13
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	2e-13
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	2e-13
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	2e-13
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	3e-13
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	4e-13
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	4e-13
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	4e-13
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	4e-13
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	5e-13
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	3e-12
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	5e-12
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	3e-11
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	4e-11
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	5e-10
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	6e-10
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	7e-10
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	8e-10
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	3e-09
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	5e-09
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	3e-07
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	8e-07
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	3e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	5e-04
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	5e-13
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	6e-13
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	7e-13
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	8e-13
3pls_A	298	Macrophage-stimulating protein receptor; protein k	8e-13
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	9e-13
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	1e-12
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	1e-12
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	1e-12
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	2e-12
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	2e-12
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	2e-12
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	2e-12
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	2e-12
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	3e-12
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	3e-12
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	4e-12
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	4e-12
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	6e-12
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	7e-12
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	7e-12
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	5e-11
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	5e-11
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	2e-10
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	2e-10
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	3e-10
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	8e-10
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	1e-09
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	3e-09
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	5e-09
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	2e-08
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	2e-08
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	5e-08
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	4e-07
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	2e-06
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	4e-04
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	8e-12
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	9e-12
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	1e-11
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	1e-11
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	1e-11
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	1e-11
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	2e-11
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	2e-11
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	2e-11
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	2e-11
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	2e-11
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	2e-11
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	2e-11
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	4e-11
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	4e-11
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	4e-11
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	6e-11
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	6e-11
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	6e-11
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	6e-11
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	7e-11
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	8e-11
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	1e-10
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	4e-10
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	5e-10
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	6e-10
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	6e-10
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	1e-09
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	2e-09
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	4e-08
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	4e-08
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	1e-07
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	2e-07
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	5e-06
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	6e-10
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	9e-10
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	1e-09
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	2e-09
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	2e-09
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	1e-08
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	7e-08
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	2e-07
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	1e-05
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	1e-09
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	1e-09
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	2e-09
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	7e-09
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	3e-08
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	5e-08
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	5e-08
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	6e-08
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	8e-08
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	6e-07
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	2e-06
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	3e-06
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	3e-06
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	1e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	2e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	2e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	1e-04
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	3e-09
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	4e-09
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	2e-06
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	2e-06
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	1e-05
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	3e-09
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	3e-09
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	3e-09
2a19_B	284	Interferon-induced, double-stranded RNA-activated	4e-09
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	4e-09
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	5e-09
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	6e-09
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	8e-09
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	8e-09
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	8e-09
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	8e-09
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	2e-06
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	3e-06
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	3e-05
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	4e-05
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	5e-05
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	1e-04
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	3e-04
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	9e-09
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	1e-08
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	2e-08
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	2e-08
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	2e-08
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	4e-07
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	5e-07
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	3e-06
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	2e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	7e-05
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	2e-08
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	3e-08
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	3e-08
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	3e-08
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	3e-08
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	3e-08
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	4e-08
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	4e-08
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	5e-08
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	5e-08
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	1e-07
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	1e-07
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	1e-07
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	2e-07
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	6e-07
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	6e-07
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	2e-06
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	2e-04
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	4e-08
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	5e-08
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	6e-08
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	7e-08
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	8e-08
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	1e-07
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	1e-07
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	1e-07
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	2e-07
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	2e-06
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	4e-06
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	9e-06
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	2e-05
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	2e-04
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	4e-04
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	4e-04
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	8e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	2e-07
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	4e-07
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	1e-06
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	4e-06
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	5e-06
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	6e-06
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	7e-06
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	7e-06
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	7e-06
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	9e-06
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	9e-06
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	1e-05
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	1e-05
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	2e-05
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	2e-05
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	2e-05
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	3e-05
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	4e-05
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	2e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	4e-04
1w7p_D	566	VPS36P, YLR417W; ESCRT-II complex, endosomal prote	2e-07
1w7p_D	566	VPS36P, YLR417W; ESCRT-II complex, endosomal prote	3e-05
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	2e-07
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	3e-07
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	4e-07
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	5e-07
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	5e-07
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	6e-07
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	6e-07
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	6e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	2e-06
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	2e-06
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	2e-06
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	2e-06
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	2e-06
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	3e-06
1ej6_B	1275	Lambda1; icosahedral, non-equivalence, dsRNA virus	3e-06
1ej6_B	1275	Lambda1; icosahedral, non-equivalence, dsRNA virus	5e-05
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	3e-06
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	3e-06
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	4e-06
3bhy_A	283	Death-associated protein kinase 3; death associate	4e-06
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	5e-06
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	5e-06
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	5e-06
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	6e-06
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	6e-06
3niz_A	311	Rhodanese family protein; structural genomics, str	8e-06
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	1e-05
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	1e-05
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	1e-05
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	1e-05
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	1e-05
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	1e-05
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	1e-05
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	2e-05
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	2e-05
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	2e-05
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	6e-05
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	3e-04
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	5e-04
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	2e-05
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	2e-05
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	2e-05
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	3e-05
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	3e-05
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	3e-05
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	4e-05
2j63_A	467	AP-endonuclease; base excision repair, lyase; 2.48	4e-05
2j63_A	467	AP-endonuclease; base excision repair, lyase; 2.48	7e-05
2j63_A	467	AP-endonuclease; base excision repair, lyase; 2.48	3e-04
2j63_A	467	AP-endonuclease; base excision repair, lyase; 2.48	8e-04
2j63_A	467	AP-endonuclease; base excision repair, lyase; 2.48	9e-04
1x9d_A	538	Endoplasmic reticulum mannosyl-oligosaccharide 1,	5e-05
1x9d_A	538	Endoplasmic reticulum mannosyl-oligosaccharide 1,	1e-04
1x9d_A	538	Endoplasmic reticulum mannosyl-oligosaccharide 1,	3e-04
1x9d_A	538	Endoplasmic reticulum mannosyl-oligosaccharide 1,	9e-04
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	5e-05
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	7e-05
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	7e-05
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	7e-05
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	9e-05
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	9e-05
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	1e-04
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	1e-04
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	1e-04
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	1e-04
2kr0_A	411	Proteasomal ubiquitin receptor ADRM1; proteasome,	1e-04
3o0g_A	292	Cell division protein kinase 5; kinase activator c	1e-04
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	2e-04
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	2e-04
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	2e-04
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	7e-04
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	2e-04
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	2e-04
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	2e-04
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	2e-04
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	2e-04
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	2e-04
1pcx_A	810	Protein transport protein SEC24; 2.50A {Saccharomy	2e-04
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-04
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	2e-04
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	2e-04
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	4e-04
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	4e-04
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	5e-04
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	5e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	6e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	7e-04
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	6e-04
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	6e-04
3vf0_A	283	Vinculin, metavinculin; cytoskeletal F-actin bindi	7e-04
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	8e-04
2es4_D	332	Lipase chaperone; protein-protein complex, steric	9e-04

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  222 bits (568), Expect = 5e-69
 Identities = 52/119 (43%), Positives = 76/119 (63%), Gaps = 3/119 (2%)

Query: 341 VNSPQDPG-GLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQL 399
           V + +DP   LG  +  F+  EL  A+D F+++N+LG GGFG VYKG L DG  VA+K+L
Sbjct: 4   VPAEEDPEVHLGQLKR-FSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRL 62

Query: 400 KIGGGQG-EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGK 457
           K    QG E +F+ EVE+IS   HR+L+ L G+C++   RLL+Y Y+ N ++   L  +
Sbjct: 63  KEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRER 121

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  213 bits (545), Expect = 1e-65
 Identities = 44/124 (35%), Positives = 65/124 (52%)

Query: 334 SGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGRE 393
           S   +   ++      +          +L +AT+ F  + L+G G FG VYKG L DG +
Sbjct: 6   SKATNSINDALSSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAK 65

Query: 394 VAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFH 453
           VA+K+      QG  EF+ E+E +S   H HLVSL+G+C   +  +LIY Y+ N  L  H
Sbjct: 66  VALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRH 125

Query: 454 LHGK 457
           L+G 
Sbjct: 126 LYGS 129

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  191 bits (489), Expect = 1e-57
 Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 11/111 (9%)

Query: 357 FTYEELVKATDGFADQ------NLLGEGGFGSVYKGYLPDGREVAIKQLKIG----GGQG 406
           F++ EL   T+ F ++      N +GEGGFG VYKGY+ +   VA+K+L         + 
Sbjct: 15  FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEEL 73

Query: 407 EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGK 457
           +++F  E++++++  H +LV L+G+    D   L+Y Y+PN +L   L   
Sbjct: 74  KQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCL 124

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  112 bits (281), Expect = 8e-28
 Identities = 22/109 (20%), Positives = 36/109 (33%), Gaps = 6/109 (5%)

Query: 353 SRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKA 412
           S      E L   +       +   G FG V+K        VA+K   I   Q   + + 
Sbjct: 10  SGVDLGTENLYFQSMPLQLLEVKARGRFGCVWKAQ-LLNEYVAVKIFPIQDKQSW-QNEY 67

Query: 413 EVEIISRIHHRHLVSLVGYCI----SDDRRLLIYDYVPNNTLYFHLHGK 457
           EV  +  + H +++  +G        D    LI  +    +L   L   
Sbjct: 68  EVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKAN 116

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score =  105 bits (264), Expect = 3e-24
 Identities = 66/254 (25%), Positives = 88/254 (34%), Gaps = 20/254 (7%)

Query: 1    MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS 60
            +             SP     +   ++                P          P    S
Sbjct: 1479 LVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVS 1538

Query: 61   NPPTSSSPPASSP--PTSSPPPASNPPTS------SPPPSP--PASSP------PTISPP 104
            +P  S + P  SP  P  SP   S  PTS      SP  SP  P+ SP      PT    
Sbjct: 1539 SPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1598

Query: 105  PPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPP 164
             P S   + + P  S T P  SP SP   P + S  P++P  + P  P  S   P  SP 
Sbjct: 1599 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPT 1657

Query: 165  SVPPQNPPPPPSSSPPKNSPPAPIAVPPSNV--PPPPTQTPPTPA-SPIAPRPSNSSPNS 221
            S       P  S + P  SP +P   P S    P  P  +P +P+ SP +P  S  SP  
Sbjct: 1658 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAY 1717

Query: 222  PPPPSTKRLSPPPG 235
             P    ++ +    
Sbjct: 1718 SPKQDEQKHNENEN 1731

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score =  101 bits (253), Expect = 8e-23
 Identities = 69/263 (26%), Positives = 100/263 (38%), Gaps = 12/263 (4%)

Query: 2    SAPSPGPPAANSSSPPP---PVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPP 58
            S  S    A           P+ +  +             +      S        P+ P
Sbjct: 1474 SNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSP 1533

Query: 59   ASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSP--PTISPPPPVSNPPTRSPP 116
                 +S     +SP  S   PA +P + S  P+ P+ SP  P+ SP  P  +P + S  
Sbjct: 1534 -GFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1592

Query: 117  PPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPS 176
            P S +  P SP   P+ P  +   PS  P++    P S    P  + PS  P +P   P+
Sbjct: 1593 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSPTSPSYSPT 1650

Query: 177  SSPPKNSPPAPIAVPPSNVPPPPTQTPPTPA-SPIAPRPSNSSPN-SPPPPSTKRLSPP- 233
            S     + PA     PS  P  P+ +P +P+ SP +P  S +SPN SP  PS    SP  
Sbjct: 1651 SPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGY 1710

Query: 234  -PGIPVPSTENTPGNGTNPSSPE 255
             PG P  S +          +  
Sbjct: 1711 SPGSPAYSPKQDEQKHNENENSR 1733

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 95.5 bits (237), Expect = 8e-21
 Identities = 56/239 (23%), Positives = 87/239 (36%), Gaps = 6/239 (2%)

Query: 31   PVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPP 90
                P  +                 SP   +    +     +    +    +  P  +  
Sbjct: 1468 GGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYG 1527

Query: 91   PSPPASSPPTISPPP-PVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLP 149
             +P +      SP   P S   + + P  S T P  SP SP   P + S  P++P  + P
Sbjct: 1528 EAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-P 1586

Query: 150  PPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPP--PTQTPPTPA 207
              P  S   P  SP S       P  S + P  SP +P   P S    P  P+ +P +P+
Sbjct: 1587 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1646

Query: 208  -SPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPE-SSSSPSNNG 264
             SP +P  S +SP   P   +   + P   P   + +      +P+SP  S +SPS + 
Sbjct: 1647 YSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSP 1705

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 93.2 bits (231), Expect = 4e-20
 Identities = 59/245 (24%), Positives = 82/245 (33%), Gaps = 17/245 (6%)

Query: 28   PPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTS 87
                     +     P  ++    +              SP   S    +          
Sbjct: 1457 QKITEIEDGQDGGVTPYSNESGLVNADLDVK---DELMFSPLVDSGSNDAMAGGFTA--Y 1511

Query: 88   SPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSN 147
                   A+SP       P S     S P  S T P  SP SP   P + S  P   PS 
Sbjct: 1512 GGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSP-TSPSY 1570

Query: 148  LPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVP--PSNVPPPPTQTPPT 205
             P  P  S   P  SP S       P  S + P  SP +P   P  PS  P  P+ +P +
Sbjct: 1571 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1630

Query: 206  PASPIAPRPSNSSPNSPP-PPSTKRLSPPPGIPVPSTENTPGNGTNPSSPE-SSSSPSNN 263
            P+    P   + SP SP   P++   SP      P++        +P+SP  S +SPS +
Sbjct: 1631 PSYS--PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP-----SYSPTSPSYSPTSPSYS 1683

Query: 264  GIGTA 268
                +
Sbjct: 1684 PTSPS 1688

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 92.5 bits (229), Expect = 6e-20
 Identities = 63/228 (27%), Positives = 88/228 (38%), Gaps = 7/228 (3%)

Query: 1    MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKS--SPPPPPVSKPPTTSPPPSPP 58
                + G      ++ P         SP   VS+P  S  SP   P S   + + P   P
Sbjct: 1506 GGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSP 1565

Query: 59   ASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPP 118
             S P  S + P+ SP + S  P S   + + P   P S   + + P      P+ SP  P
Sbjct: 1566 TS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1624

Query: 119  SSTPP-PNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSS 177
            S +P  P+  P+ PS  P +       PS  P  P  S   P  SP S       P  S 
Sbjct: 1625 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1684

Query: 178  SPPKNSPPAPIAVP--PSNVPPPPTQTPPTPA-SPIAPRPSNSSPNSP 222
            + P  SP +P   P  PS  P  P  +P +PA SP      ++   + 
Sbjct: 1685 TSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNENENS 1732

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 75.1 bits (184), Expect = 2e-14
 Identities = 45/220 (20%), Positives = 73/220 (33%), Gaps = 13/220 (5%)

Query: 55   PSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRS 114
            P    +          +     S    ++          P     +             +
Sbjct: 1455 PEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGA 1514

Query: 115  PPPPSSTPPPNSPPSPPSDPPANSPPPSNP--PSNLPPPPPSSVEPPKRSPPSVPPQNPP 172
                +++P      +P S     S P  +P  P+  P  P  S   P  SP S       
Sbjct: 1515 DYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTS 1574

Query: 173  PPPSSSPPKNSPPAPIAVPPSNV--PPPPTQTPPTPA--------SPIAPRPSNSSPNSP 222
            P  S + P  SP +P   P S    P  P+ +P +P+        SP +P  S +SP+  
Sbjct: 1575 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1634

Query: 223  PPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPE-SSSSPS 261
            P   +   + P   P   + +      +P+SP  S +SPS
Sbjct: 1635 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPS 1674

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 50.9 bits (121), Expect = 8e-07
 Identities = 22/143 (15%), Positives = 35/143 (24%), Gaps = 9/143 (6%)

Query: 122  PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPK 181
            P               +P  +              +    SP      N       +   
Sbjct: 1455 PEQKITEIEDGQDGGVTPYSNESGL--VNADLDVKDELMFSPLVDSGSNDAMAGGFTAYG 1512

Query: 182  NSPPAPIAVPPSNVPPPPTQTPPTPASP-IAPRPSNSSPNSPPPPSTKRLSPPPGIPVPS 240
             +       P       PT      +SP  +P     SP SP        SP      P+
Sbjct: 1513 GADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAY------SPTSPSYSPT 1566

Query: 241  TENTPGNGTNPSSPESSSSPSNN 263
            + +      + S    S SP++ 
Sbjct: 1567 SPSYSPTSPSYSPTSPSYSPTSP 1589

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score =  101 bits (253), Expect = 7e-23
 Identities = 72/241 (29%), Positives = 99/241 (41%), Gaps = 22/241 (9%)

Query: 1    MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSP--P 58
                     A+       P    P  S   P      +SP   P S   +TSP   P  P
Sbjct: 1519 FGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGL--TSPSYSPSSPGYSTSPAYMPSSP 1576

Query: 59   ASNP------PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSP--PTISPPPPVSNP 110
            + +P      PTS S   +SP  S   P+ +  + S  P+ P+ SP  P+ SP  P  +P
Sbjct: 1577 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSP 1636

Query: 111  PTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPS---NLPPPPPSSVEPPKRSPPSVP 167
             + S  P S +  P SP   P+ P  +   PS  P+     P  P  S   P  SP S  
Sbjct: 1637 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1696

Query: 168  PQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPA-SPIAPRPSNSSPN-SPPPP 225
                 P  S + P  SP +P   P S     P+ +P +P+ SP +P  S +SP+ SP  P
Sbjct: 1697 YSPTSPSYSPTSPSYSPTSPSYSPTS-----PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1751

Query: 226  S 226
            S
Sbjct: 1752 S 1752

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 97.1 bits (241), Expect = 2e-21
 Identities = 72/239 (30%), Positives = 92/239 (38%), Gaps = 13/239 (5%)

Query: 2    SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
                               +  P      P    P SS   P       +  P SP  S 
Sbjct: 1508 LVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYST 1567

Query: 62   -PPTSSSPPASSP--PTSSPPPASNPPTSSPPPSPPASSPPTISP-PPPVSNPPTRSPPP 117
             P    S P+ SP  P+ SP   S  PTS P  SP + S    SP   P S   + + P 
Sbjct: 1568 SPAYMPSSPSYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYSATSPSYSPTSPSYSPTSPS 1626

Query: 118  PSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSS 177
             S T P  SP SP   P + S  P++P  + P  P  S   P  SP S       P  S 
Sbjct: 1627 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1685

Query: 178  SPPKNSPPAPIAVP--PSNVPPPPTQTPPTPA-SPIAPRPSNSSPNSPP-PPSTKRLSP 232
            + P  SP +P   P  PS  P  P+ +P +P+ SP +P     SP SP   P++   SP
Sbjct: 1686 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY---SPTSPSYSPTSPSYSP 1741

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 95.9 bits (238), Expect = 5e-21
 Identities = 77/279 (27%), Positives = 104/279 (37%), Gaps = 24/279 (8%)

Query: 1    MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS 60
            M        A       P V +    SP     +P                       AS
Sbjct: 1473 MGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGR---EGFGDYGLLGAAS 1529

Query: 61   NPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSP-PTISPPPPVSNP--PTRSPPP 117
                  SP  +SP +S+  P     + S  PS P  S  P   P  P  +P  P+ SP  
Sbjct: 1530 PYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTS 1589

Query: 118  P--SSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPP 175
            P  S T P  SP SP     + S  P++P  + P  P  S   P  SP S  P   P  P
Sbjct: 1590 PSYSPTSPSYSPTSPSYSATSPSYSPTSPSYS-PTSPSYSPTSPSYSPTS--PSYSPTSP 1646

Query: 176  SSSP--PKNSPPAPIAVPPSNVPPP--PTQTPPTPA--------SPIAPRPSNSSPNSPP 223
            S SP  P  SP +P   P S    P  P+ +P +P+        SP +P  S +SP+  P
Sbjct: 1647 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1706

Query: 224  PPSTKRLSPPPGIPVPSTENTPGNGTNPSSPE-SSSSPS 261
               +   + P   P   + +      +P+SP  S +SPS
Sbjct: 1707 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1745

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 85.9 bits (212), Expect = 8e-18
 Identities = 54/234 (23%), Positives = 81/234 (34%), Gaps = 13/234 (5%)

Query: 41   PPPPVSKPPTTSPPPSPPASNPPTSS--SPPASSPPTSSPPPASNPPTSSPPPSPPASSP 98
             P     P   SP         P ++  SP                   +  P     SP
Sbjct: 1478 LPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGVQSP 1537

Query: 99   PTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEP 158
               SP     +P        S +  P+SP    S     S P  +P S  P   P+S   
Sbjct: 1538 GYTSPFSSAMSP---GYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTS--PSYSPTS--- 1589

Query: 159  PKRSPPSVPPQNPPPPPSSSPPKNSP--PAPIAVPPSNVPPPPTQTPPTPA-SPIAPRPS 215
            P  SP S       P  S++ P  SP  P+     PS  P  P+ +P +P+ SP +P  S
Sbjct: 1590 PSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1649

Query: 216  NSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPSNNGIGTAG 269
             +SP+  P   +   + P   P   + +      +P+SP  S +  +    +  
Sbjct: 1650 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1703

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 79.0 bits (194), Expect = 1e-15
 Identities = 55/233 (23%), Positives = 79/233 (33%), Gaps = 11/233 (4%)

Query: 38   SSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASS 97
            S     P            P  +  P   SP   S    SP  A+  P            
Sbjct: 1460 SLGTAVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGF 1519

Query: 98   PPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPA--NSPPPSNPPSNLPPPPPSS 155
                           +SP   S      SP    + P    +SP  S  P+ +P  P  S
Sbjct: 1520 GDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYS 1579

Query: 156  VEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVP--PSNVPPPPTQTPPTPA-SPIAP 212
               P  SP S       P  S + P  S  +P   P  PS  P  P+ +P +P+ SP +P
Sbjct: 1580 PTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1639

Query: 213  RPSNSSPNSPPP-PSTKRLSPPPGIPVPSTENTPGNGT--NPSSPESSSSPSN 262
               + SP SP   P++   SP      P++ +        +P+SP  S +  +
Sbjct: 1640 ---SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1689

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 93.0 bits (231), Expect = 4e-21
 Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 11/108 (10%)

Query: 357 FTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEI 416
               E     D      L+G G +G+VYKG L D R VA+K          + F  E  I
Sbjct: 3   AAASEPSLDLDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSF---ANRQNFINEKNI 58

Query: 417 --ISRIHHRHLVSLVGYCI-----SDDRRLLIYDYVPNNTLYFHLHGK 457
             +  + H ++   +              LL+ +Y PN +L  +L   
Sbjct: 59  YRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLH 106

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 82.3 bits (204), Expect = 7e-18
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 5/87 (5%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGG----GQGEREFKAEVEIISRIHHRHLVSLVG 430
           +G GGFG VY+ +   G EVA+K  +        Q     + E ++ + + H ++++L G
Sbjct: 15  IGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRG 73

Query: 431 YCISDDRRLLIYDYVPNNTLYFHLHGK 457
            C+ +    L+ ++     L   L GK
Sbjct: 74  VCLKEPNLCLVMEFARGGPLNRVLSGK 100

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 82.0 bits (203), Expect = 1e-17
 Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 10/94 (10%)

Query: 372 QNLLGEGGFGSVYKG-YLPDGREVAIKQLKIGGGQGE-------REFKAEVEIISRIHHR 423
           +  +G+GGFG V+KG  + D   VAIK L +G  +GE       +EF+ EV I+S ++H 
Sbjct: 24  EKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHP 83

Query: 424 HLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGK 457
           ++V L G     +   ++ ++VP   LY  L  K
Sbjct: 84  NIVKLYGLMH--NPPRMVMEFVPCGDLYHRLLDK 115

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 83.7 bits (206), Expect = 3e-17
 Identities = 29/168 (17%), Positives = 46/168 (27%), Gaps = 6/168 (3%)

Query: 19  PVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSP 78
           P +         P+  P +  PP  P +   +      PP    P+       +P     
Sbjct: 10  PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQL 69

Query: 79  PPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANS 138
               +  T+S       + P      P     P     P     P      P + P    
Sbjct: 70  HQQIDQATTSMNDMHLHNVPL---VDPNAYMQP---QVPVQMGTPLQQQQQPMAAPAYGQ 123

Query: 139 PPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPA 186
           P  +   +  P      ++     PP +     PPPP   PP+     
Sbjct: 124 PSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVP 171

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 80.6 bits (198), Expect = 3e-16
 Identities = 31/190 (16%), Positives = 47/190 (24%), Gaps = 6/190 (3%)

Query: 70  ASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPS 129
           +       P        ++ P   PA   P   P     +      PP  + P       
Sbjct: 2   SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61

Query: 130 PPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIA 189
                           +++      +V              P  P     P      P+A
Sbjct: 62  LTPAQEQLHQQIDQATTSMNDMHLHNVPLV----DPNAYMQPQVPVQMGTPLQQQQQPMA 117

Query: 190 VPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGT 249
            P    P         P +     P +     PPP +   L PPP +  P     P   +
Sbjct: 118 APAYGQPSAAMGQNMRPMNQ--LYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELS 175

Query: 250 NPSSPESSSS 259
           N S     S+
Sbjct: 176 NASPDYIRST 185

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 80.3 bits (197), Expect = 5e-16
 Identities = 23/185 (12%), Positives = 35/185 (18%)

Query: 87  SSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPS 146
           S         +             P +  PP        S       P    P       
Sbjct: 2   SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61

Query: 147 NLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTP 206
             P       +  + +           P         P  P+ +             P  
Sbjct: 62  LTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAY 121

Query: 207 ASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPSNNGIG 266
             P A    N  P +   P       PP I   +    P           S   + +   
Sbjct: 122 GQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDY 181

Query: 267 TAGTV 271
              T+
Sbjct: 182 IRSTL 186

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 79.5 bits (195), Expect = 7e-16
 Identities = 30/196 (15%), Positives = 51/196 (26%), Gaps = 4/196 (2%)

Query: 8   PPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSS 67
                      P+  P    PP     P  +      +  PP  + P          +  
Sbjct: 11  QAQLQYGQNATPLQQPAQFMPPQD---PAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQE 67

Query: 68  PPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSP 127
                   ++         + P   P A   P +           + P    +   P++ 
Sbjct: 68  QLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAA 127

Query: 128 PSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAP 187
                 P  N   P +  + LPPP      PP            P   S++ P       
Sbjct: 128 MGQNMRPM-NQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRSTL 186

Query: 188 IAVPPSNVPPPPTQTP 203
            AVP ++     ++ P
Sbjct: 187 NAVPKNSSLLKKSKLP 202

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 77.2 bits (189), Expect = 4e-15
 Identities = 26/188 (13%), Positives = 48/188 (25%), Gaps = 5/188 (2%)

Query: 58  PASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPP 117
           P +      +      P    PP   P  +          P      P +      +P  
Sbjct: 10  PQAQLQYGQNATPLQQPAQFMPPQD-PAAAGMSYGQMGMPPQ--GAVPSMGQQQFLTPAQ 66

Query: 118 PSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPP--KRSPPSVPPQNPPPPP 175
                  +   +  +D   ++ P  +P + + P  P  +  P  ++  P   P    P  
Sbjct: 67  EQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSA 126

Query: 176 SSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPG 235
           +             +      PPP      P  P+   P      S    ++        
Sbjct: 127 AMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRSTL 186

Query: 236 IPVPSTEN 243
             VP   +
Sbjct: 187 NAVPKNSS 194

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 71.8 bits (175), Expect = 2e-13
 Identities = 32/210 (15%), Positives = 46/210 (21%), Gaps = 5/210 (2%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS- 60
           +A     PA       P  +         P      S      ++            A+ 
Sbjct: 19  NATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATT 78

Query: 61  --NPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPP 118
             N     + P   P     P       +         + P    P        R     
Sbjct: 79  SMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQL 138

Query: 119 SSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPS--VPPQNPPPPPS 176
                    P P +D     PP   PP  +  P   S   P     +    P+N      
Sbjct: 139 YPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRSTLNAVPKNSSLLKK 198

Query: 177 SSPPKNSPPAPIAVPPSNVPPPPTQTPPTP 206
           S  P      P      ++ PPP       
Sbjct: 199 SKLPFGLVIRPYQHLYDDIDPPPLNEDGLI 228

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 13/135 (9%), Positives = 24/135 (17%), Gaps = 8/135 (5%)

Query: 138 SPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPP 197
           S                +  P ++    +PPQ+P     S      PP            
Sbjct: 2   SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQG--------AV 53

Query: 198 PPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESS 257
           P                      +         + P   P    +            +  
Sbjct: 54  PSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQ 113

Query: 258 SSPSNNGIGTAGTVV 272
              +    G     +
Sbjct: 114 QPMAAPAYGQPSAAM 128

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 79.3 bits (196), Expect = 1e-16
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 3/85 (3%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYC 432
           +G G FG+V++     G +VA+K L       +   EF  EV I+ R+ H ++V  +G  
Sbjct: 45  IGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAV 103

Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGK 457
                  ++ +Y+   +LY  LH  
Sbjct: 104 TQPPNLSIVTEYLSRGSLYRLLHKS 128

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 78.4 bits (194), Expect = 2e-16
 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 5/98 (5%)

Query: 372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIG--GGQGEREFKAEVEIISRIHHRHLVSLV 429
              L E   G ++KG    G ++ +K LK+     +  R+F  E   +    H +++ ++
Sbjct: 15  LTKLNENHSGELWKGRW-QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVL 73

Query: 430 GYCIS--DDRRLLIYDYVPNNTLYFHLHGKWQLGFDIR 465
           G C S       LI  ++P  +LY  LH       D  
Sbjct: 74  GACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQS 111

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 77.0 bits (190), Expect = 9e-16
 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGE--REFKAEVEIISRIHHRHLVSLVG 430
            L+G+G FG VY G      EVAI+ + I     +  + FK EV    +  H ++V  +G
Sbjct: 39  ELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMG 96

Query: 431 YCISDDRRLLIYDYVPNNTLYFHLHGK 457
            C+S     +I       TLY  +   
Sbjct: 97  ACMSPPHLAIITSLCKGRTLYSVVRDA 123

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 76.2 bits (188), Expect = 1e-15
 Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYC 432
           +G G FG+VYKG      +VA+K L +     Q  + FK EV ++ +  H +++  +GY 
Sbjct: 32  IGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 89

Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGK 457
            +  +  ++  +   ++LY HLH  
Sbjct: 90  -TAPQLAIVTQWCEGSSLYHHLHAS 113

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 76.2 bits (188), Expect = 1e-15
 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 5/83 (6%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           +G G FG V K      ++VAIKQ++       + F  E+  +SR++H ++V L G C+ 
Sbjct: 16  VGRGAFGVVCKAKW-RAKDVAIKQIE--SESERKAFIVELRQLSRVNHPNIVKLYGACL- 71

Query: 435 DDRRLLIYDYVPNNTLYFHLHGK 457
            +   L+ +Y    +LY  LHG 
Sbjct: 72  -NPVCLVMEYAEGGSLYNVLHGA 93

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 375 LGEGGFGSVYKG-YLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCI 433
           LG+G FG   K  +   G  + +K+L     + +R F  EV+++  + H +++  +G   
Sbjct: 18  LGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLY 77

Query: 434 SDDRRLLIYDYVPNNTLYFHLHGK 457
            D R   I +Y+   TL   +   
Sbjct: 78  KDKRLNFITEYIKGGTLRGIIKSM 101

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 75.4 bits (186), Expect = 2e-15
 Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 7/80 (8%)

Query: 375 LGEGGFGSVYKGY---LPDGRE--VAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV       L D     VA+K+L+    +  R+F+ E+EI+  + H ++V   
Sbjct: 18  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77

Query: 430 GYCISDDRR--LLIYDYVPN 447
           G C S  RR   LI +Y+P 
Sbjct: 78  GVCYSAGRRNLKLIMEYLPY 97

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 77.3 bits (189), Expect = 3e-15
 Identities = 21/215 (9%), Positives = 39/215 (18%), Gaps = 3/215 (1%)

Query: 10  AANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPP 69
              ++ P    +N   +S     S            ++                 ++SP 
Sbjct: 21  GEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVAT--ASETASPA 78

Query: 70  ASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPS 129
           ++   T+    A++        S   +  P+    P         P   +          
Sbjct: 79  SNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAE 138

Query: 130 PPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPS-SSPPKNSPPAPI 188
                    P           P        +      P        +  S    S     
Sbjct: 139 ANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTGH 198

Query: 189 AVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPP 223
            V          Q      S      S        
Sbjct: 199 LVNEKASKEAKVQALSNTNSKAKDHASVGGEEFKA 233

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 73.1 bits (178), Expect = 9e-14
 Identities = 17/194 (8%), Positives = 41/194 (21%), Gaps = 3/194 (1%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
                    +  S                  N  + +      S+  + +   +      
Sbjct: 29  NSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATT--- 85

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTP 122
            T+ +  A+ P   +    +  P++   P     +                +    +   
Sbjct: 86  ETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKE 145

Query: 123 PPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKN 182
                P              N    L    P + E    +  SV   +       +   +
Sbjct: 146 VQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTGHLVNEKAS 205

Query: 183 SPPAPIAVPPSNVP 196
                 A+  +N  
Sbjct: 206 KEAKVQALSNTNSK 219

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 71.1 bits (173), Expect = 4e-13
 Identities = 21/213 (9%), Positives = 44/213 (20%), Gaps = 10/213 (4%)

Query: 35  PPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPP 94
            P++S     +     +    +          +             AS   + +   +  
Sbjct: 26  VPENSGANTELVSGE-SEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAAT 84

Query: 95  ASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPS 154
             +    S   P           PS+   P S     + P A +                
Sbjct: 85  TETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQ---------GDESKP 135

Query: 155 SVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRP 214
           + E  K      P        +  P +    +   +                +  +A R 
Sbjct: 136 AAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRR 195

Query: 215 SNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGN 247
           +    N       K  +            + G 
Sbjct: 196 TGHLVNEKASKEAKVQALSNTNSKAKDHASVGG 228

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 68.1 bits (165), Expect = 3e-12
 Identities = 17/208 (8%), Positives = 46/208 (22%), Gaps = 2/208 (0%)

Query: 59  ASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPP 118
             +     +       T+ P  +          S  +++          +          
Sbjct: 8   HGHHHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEG 67

Query: 119 SSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPS-- 176
            +T    + P+        +   ++             E P         +     P   
Sbjct: 68  VATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEAT 127

Query: 177 SSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGI 236
           +   ++ P A        V P   +       P   + ++        P  +        
Sbjct: 128 NQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRG 187

Query: 237 PVPSTENTPGNGTNPSSPESSSSPSNNG 264
            V       G+  N  + + +   + + 
Sbjct: 188 SVVLASRRTGHLVNEKASKEAKVQALSN 215

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 66.1 bits (160), Expect = 1e-11
 Identities = 22/206 (10%), Positives = 44/206 (21%), Gaps = 2/206 (0%)

Query: 57  PPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPP 116
              +  P +S          S    +     +       +           S   + +  
Sbjct: 21  GEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASN 80

Query: 117 PPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPS 176
             ++T       S        S   +  PS    P        K    +   ++ P   +
Sbjct: 81  EAATTETAE-AASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEA 139

Query: 177 SSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGI 236
           +   K   P            P      +    +   P     ++    S    S   G 
Sbjct: 140 NKTEKEVQPDV-PKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTGH 198

Query: 237 PVPSTENTPGNGTNPSSPESSSSPSN 262
            V    +        S+  S +    
Sbjct: 199 LVNEKASKEAKVQALSNTNSKAKDHA 224

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 59.2 bits (142), Expect = 2e-09
 Identities = 17/172 (9%), Positives = 32/172 (18%), Gaps = 3/172 (1%)

Query: 103 PPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRS 162
              P ++          S    N          A                 S    P  +
Sbjct: 24  TAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAE---GVATASETASPASN 80

Query: 163 PPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSP 222
             +          +    K S            P    +T   P +      S  +  + 
Sbjct: 81  EAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEAN 140

Query: 223 PPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPSNNGIGTAGTVVIA 274
                 +   P               +     +       +     G+VV+A
Sbjct: 141 KTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLA 192

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 74.7 bits (184), Expect = 6e-15
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 7/83 (8%)

Query: 375 LGEGGFGSVYKGY---LPDGRE--VAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV       L D     VA+K+L+    +  R+F+ E+EI+  + H ++V   
Sbjct: 49  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 108

Query: 430 GYCISDDRR--LLIYDYVPNNTL 450
           G C S  RR   LI +Y+P  +L
Sbjct: 109 GVCYSAGRRNLKLIMEYLPYGSL 131

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 74.7 bits (184), Expect = 7e-15
 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 7/80 (8%)

Query: 375 LGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG+G FGSV    Y P G      VA+KQL+  G   +R+F+ E++I+  +H   +V   
Sbjct: 31  LGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYR 90

Query: 430 GYCISDDRR--LLIYDYVPN 447
           G      R+   L+ +Y+P+
Sbjct: 91  GVSYGPGRQSLRLVMEYLPS 110

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 71.2 bits (175), Expect = 7e-14
 Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEI--ISRIHHRHLVSLV 429
              +G+G +G V++G    G  VA+K       + E+ +  E E+     + H +++  +
Sbjct: 13  LECVGKGRYGEVWRGSW-QGENVAVKIFS---SRDEKSWFRETELYNTVMLRHENILGFI 68

Query: 430 GYCISDDRR----LLIYDYVPNNTLYFHLHGK 457
              ++         LI  Y    +LY +L   
Sbjct: 69  ASDMTSRHSSTQLWLITHYHEMGSLYDYLQLT 100

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 70.7 bits (174), Expect = 9e-14
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 6/79 (7%)

Query: 375 LGEGGFGSVYKGYLPDGRE------VAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSL 428
           LGEG FG V+     +         VA+K LK       ++F+ E E+++ + H H+V  
Sbjct: 23  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKF 82

Query: 429 VGYCISDDRRLLIYDYVPN 447
            G C   D  +++++Y+ +
Sbjct: 83  YGVCGDGDPLIMVFEYMKH 101

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 71.2 bits (175), Expect = 9e-14
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 6/79 (7%)

Query: 375 LGEGGFGSVYKGYLPDGRE------VAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSL 428
           LGEG FG V+     +         VA+K LK       ++F+ E E+++ + H+H+V  
Sbjct: 49  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 108

Query: 429 VGYCISDDRRLLIYDYVPN 447
            G C      L++++Y+ +
Sbjct: 109 FGVCTEGRPLLMVFEYMRH 127

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 70.3 bits (173), Expect = 1e-13
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           +G G FG V+ GY  +  +VAIK ++  G   E +F  E E++ ++ H  LV L G C+ 
Sbjct: 16  IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 74

Query: 435 DDRRLLIYDYVPNNTL 450
                L+ +++ +  L
Sbjct: 75  QAPICLVTEFMEHGCL 90

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 8/81 (9%)

Query: 375 LGEGGFGSVYKGYL--------PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLV 426
           LG+G F  ++KG              EV +K L          F     ++S++ H+HLV
Sbjct: 16  LGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLV 75

Query: 427 SLVGYCISDDRRLLIYDYVPN 447
              G C+  D  +L+ ++V  
Sbjct: 76  LNYGVCVCGDENILVQEFVKF 96

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 8/84 (9%)

Query: 375 LGEGGFGSVYKGYL---PDGRE--VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVSL 428
           LGEG FG V         DG    VA+K LK   G   R  +K E++I+  ++H H++  
Sbjct: 39  LGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKY 98

Query: 429 VGYCISDDRR--LLIYDYVPNNTL 450
            G C         L+ +YVP  +L
Sbjct: 99  KGCCEDAGAASLQLVMEYVPLGSL 122

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 8/81 (9%)

Query: 375 LGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVSL 428
           LGEG FG V    Y P+G      VA+K LK   G     + K E+EI+  ++H ++V  
Sbjct: 29  LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKY 88

Query: 429 VGYCISDDRR--LLIYDYVPN 447
            G C  D      LI +++P+
Sbjct: 89  KGICTEDGGNGIKLIMEFLPS 109

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 69.5 bits (171), Expect = 2e-13
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 3/85 (3%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V  G      +VA+K +K  G   E EF  E + + ++ H  LV   G C  
Sbjct: 16  LGSGQFGVVKLGKWKGQYDVAVKMIK-EGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCSK 74

Query: 435 DDRRLLIYDYVPNNTL--YFHLHGK 457
           +    ++ +Y+ N  L  Y   HGK
Sbjct: 75  EYPIYIVTEYISNGCLLNYLRSHGK 99

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 5/75 (6%)

Query: 372 QNLLGEGGFGSVYKGYL--PDGRE--VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLV 426
             ++G G FG VY G L   DG++   A+K L      GE  +F  E  I+    H +++
Sbjct: 30  NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 89

Query: 427 SLVGYCISDDRRLLI 441
           SL+G C+  +   L+
Sbjct: 90  SLLGICLRSEGSPLV 104

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 69.6 bits (171), Expect = 3e-13
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 7/80 (8%)

Query: 375 LGEGGFGSVYKGYLPDGRE------VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVS 427
           +GEG FG V++   P          VA+K LK       + +F+ E  +++   + ++V 
Sbjct: 55  IGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVK 114

Query: 428 LVGYCISDDRRLLIYDYVPN 447
           L+G C       L+++Y+  
Sbjct: 115 LLGVCAVGKPMCLLFEYMAY 134

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 69.4 bits (170), Expect = 4e-13
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 10/92 (10%)

Query: 372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEI--ISRIHHRHLVSLV 429
              +G+G +G V+ G    G +VA+K         E  +  E EI     + H +++  +
Sbjct: 42  VKQIGKGRYGEVWMGKW-RGEKVAVKVFFT---TEEASWFRETEIYQTVLMRHENILGFI 97

Query: 430 GYCISDDRR----LLIYDYVPNNTLYFHLHGK 457
              I          LI DY  N +LY +L   
Sbjct: 98  AADIKGTGSWTQLYLITDYHENGSLYDYLKST 129

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 69.2 bits (170), Expect = 4e-13
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 7/80 (8%)

Query: 375 LGEGGFGSVYKGYLPDGRE------VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVS 427
           LGEG FG V K      +       VA+K LK      E  +  +E  ++ +++H H++ 
Sbjct: 31  LGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIK 90

Query: 428 LVGYCISDDRRLLIYDYVPN 447
           L G C  D   LLI +Y   
Sbjct: 91  LYGACSQDGPLLLIVEYAKY 110

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 69.2 bits (170), Expect = 4e-13
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 6/77 (7%)

Query: 375 LGEGGFGSVYKGYLPDGRE----VAIKQLKIGG-GQGER-EFKAEVEIISRIHHRHLVSL 428
           LGEG FGSV +G L         VA+K +K+    Q E  EF +E   +    H +++ L
Sbjct: 42  LGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRL 101

Query: 429 VGYCISDDRRLLIYDYV 445
           +G CI    + +    V
Sbjct: 102 LGVCIEMSSQGIPKPMV 118

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 70.7 bits (173), Expect = 4e-13
 Identities = 36/202 (17%), Positives = 61/202 (30%), Gaps = 19/202 (9%)

Query: 266 GTAGTVVIAVAVGIIAFSLIGLVVWCLRRRKKEVSGLNGVYIMPSPLGSSSTTDSSYIKT 325
           G    + +      IA ++  L+    R                      S    +  + 
Sbjct: 292 GAPEPLTVTAPSLTIAENMADLIDGYCRLVNGATQSFIIRPQKEGERALPSIPKLANNEK 351

Query: 326 QSSAPLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNL-----LGEGGF 380
           Q       S   +D      D           TY            + +     +GEG F
Sbjct: 352 QGVRSHTVSVSETDDYAEIIDEED--------TYTMPSTRDYEIQRERIELGRCIGEGQF 403

Query: 381 GSVYKGYL--PDGRE--VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVSLVGYCISD 435
           G V++G    P+     VAIK  K       R +F  E   + +  H H+V L+G   ++
Sbjct: 404 GDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVI-TE 462

Query: 436 DRRLLIYDYVPNNTLYFHLHGK 457
           +   +I +      L   L  +
Sbjct: 463 NPVWIIMELCTLGELRSFLQVR 484

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 69.8 bits (170), Expect = 5e-13
 Identities = 24/124 (19%), Positives = 36/124 (29%), Gaps = 3/124 (2%)

Query: 15  SPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPP 74
           S      +   + P       P +S             PP + P   PP   +P A +PP
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 75  TSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSS---TPPPNSPPSPP 131
            +    +        P  P  +S            P   +  PP++    P     P P 
Sbjct: 63  DTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPE 122

Query: 132 SDPP 135
            DP 
Sbjct: 123 PDPV 126

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 67.5 bits (164), Expect = 3e-12
 Identities = 25/130 (19%), Positives = 36/130 (27%), Gaps = 3/130 (2%)

Query: 38  SSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASS 97
           SS          +   P       P  S +  AS    +  PP + P  + PPP  PA+ 
Sbjct: 3   SSHHHHH---HSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAG 59

Query: 98  PPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVE 157
            P  +             P    T            P   +P  + P +    P      
Sbjct: 60  NPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHP 119

Query: 158 PPKRSPPSVP 167
            P+  P  V 
Sbjct: 120 VPEPDPVRVE 129

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 66.7 bits (162), Expect = 5e-12
 Identities = 26/140 (18%), Positives = 36/140 (25%), Gaps = 11/140 (7%)

Query: 45  VSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPAS-NPPTSSPPPSPPASSPPTISP 103
           +          S           P AS    +S   A+ +PP + P P+PP    P    
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGN 60

Query: 104 PPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSP 163
           PP              S          P+ P   S  P+      P P   +  PP    
Sbjct: 61  PPD--------TVTGDSVLQR--ILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGR 110

Query: 164 PSVPPQNPPPPPSSSPPKNS 183
                 + P P         
Sbjct: 111 AVPGLYHHPVPEPDPVRVEE 130

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 64.0 bits (155), Expect = 3e-11
 Identities = 27/122 (22%), Positives = 39/122 (31%), Gaps = 1/122 (0%)

Query: 33  SNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPS 92
            +   SS   P  S     S   +  AS+   +  PP + P  + PPP +    + P   
Sbjct: 6   HHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTV 65

Query: 93  PPASSPPTISPPPPVSNPPTRSP-PPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPP 151
              S    I   P      + +P       P P +P S P       P   + P   P P
Sbjct: 66  TGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDP 125

Query: 152 PP 153
             
Sbjct: 126 VR 127

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 63.6 bits (154), Expect = 4e-11
 Identities = 24/131 (18%), Positives = 37/131 (28%), Gaps = 5/131 (3%)

Query: 80  PASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPP--SDPPAN 137
              +  +S   P       P+ S     S+      PP +   P   PP  P   +PP  
Sbjct: 5   HHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDT 64

Query: 138 SPPPSNPPSNLPPP---PPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSN 194
               S     L  P     +S+ P  R      P+ P   P ++           VP  +
Sbjct: 65  VTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPD 124

Query: 195 VPPPPTQTPPT 205
                  +   
Sbjct: 125 PVRVEEVSRRI 135

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 60.2 bits (145), Expect = 5e-10
 Identities = 25/137 (18%), Positives = 40/137 (29%), Gaps = 6/137 (4%)

Query: 33  SNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPS 92
           S+          V +         P AS    +S   A+  P  + P  + PP  +P   
Sbjct: 3   SSHHHHHHSSGLVPRGS---HMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAG 59

Query: 93  PPASSPPTISPPPPVSNPPTR---SPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLP 149
            P  +    S    +   PT    +   P+        P  P+  P  +        + P
Sbjct: 60  NPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHP 119

Query: 150 PPPPSSVEPPKRSPPSV 166
            P P  V   + S    
Sbjct: 120 VPEPDPVRVEEVSRRIK 136

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 60.2 bits (145), Expect = 6e-10
 Identities = 26/129 (20%), Positives = 35/129 (27%), Gaps = 7/129 (5%)

Query: 66  SSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPN 125
           SS       +   P  S+    S   +  AS       PP     P    PPP   P   
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDP---APPPPPAPAAG 59

Query: 126 SPPSPPSDPPANSPPPSNP-PSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSS-SPPKNS 183
           +P  P +    +        P+       +      R P    P + PP      P    
Sbjct: 60  NP--PDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYH 117

Query: 184 PPAPIAVPP 192
            P P   P 
Sbjct: 118 HPVPEPDPV 126

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 59.8 bits (144), Expect = 7e-10
 Identities = 22/124 (17%), Positives = 32/124 (25%), Gaps = 2/124 (1%)

Query: 85  PTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPP--PNSPPSPPSDPPANSPPPS 142
                  S        +  P                 P   P+  P PP  P A +PP +
Sbjct: 5   HHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDT 64

Query: 143 NPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQT 202
               ++          P  +  +   +    P   +P    P A  AVP     P P   
Sbjct: 65  VTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPD 124

Query: 203 PPTP 206
           P   
Sbjct: 125 PVRV 128

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 59.8 bits (144), Expect = 8e-10
 Identities = 22/127 (17%), Positives = 30/127 (23%)

Query: 96  SSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSS 155
           SS         +    +    P +S     S       PP   P P+ PP   P      
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 156 VEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPS 215
                 S      + P  P ++S            P +    PP      P     P P 
Sbjct: 63  DTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPE 122

Query: 216 NSSPNSP 222
                  
Sbjct: 123 PDPVRVE 129

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 57.8 bits (139), Expect = 3e-09
 Identities = 24/140 (17%), Positives = 37/140 (26%), Gaps = 11/140 (7%)

Query: 114 SPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPP 173
                S   P  S    PS   + +   S+  + L PP       P   P       P  
Sbjct: 7   HHHHSSGLVPRGSHMVIPS--ASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDT 64

Query: 174 PPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPP 233
               S  +     P     +            PA     +P   +P S PP + + +   
Sbjct: 65  VTGDSVLQRILRGPTGPGTT---------SLAPAVRYGRQPGPEAPASAPPAAGRAVPGL 115

Query: 234 PGIPVPSTENTPGNGTNPSS 253
              PVP  +       +   
Sbjct: 116 YHHPVPEPDPVRVEEVSRRI 135

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 57.1 bits (137), Expect = 5e-09
 Identities = 24/123 (19%), Positives = 29/123 (23%), Gaps = 2/123 (1%)

Query: 102 SPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKR 161
           S      +     P       P  S  S  SD  A   PP   P   P PPP        
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPD--PAPPPPPAPAAGN 60

Query: 162 SPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNS 221
            P +V   +        P      +          P P      P +     P       
Sbjct: 61  PPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPV 120

Query: 222 PPP 224
           P P
Sbjct: 121 PEP 123

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 51.7 bits (123), Expect = 3e-07
 Identities = 20/112 (17%), Positives = 27/112 (24%), Gaps = 2/112 (1%)

Query: 151 PPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVP--PPPTQTPPTPAS 208
              SS   P+ S   +P  +     S       PP  +  P    P  P     P T   
Sbjct: 8   HHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTG 67

Query: 209 PIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSP 260
               +     P  P   S          P P    +       + P     P
Sbjct: 68  DSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHP 119

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 50.1 bits (119), Expect = 8e-07
 Identities = 23/112 (20%), Positives = 31/112 (27%), Gaps = 8/112 (7%)

Query: 137 NSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQ---NPPPPPSSSPPKNSPPAPIAVPPS 193
           +S    +  S L P     V P      +         PP     P    PPAP A  P 
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 194 NVPPPPTQTPPTPASPI-----APRPSNSSPNSPPPPSTKRLSPPPGIPVPS 240
           +     +        P      +  P+      P P +     P  G  VP 
Sbjct: 63  DTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPG 114

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 45.1 bits (106), Expect = 3e-05
 Identities = 12/98 (12%), Positives = 21/98 (21%), Gaps = 1/98 (1%)

Query: 165 SVPPQNPPP-PPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPP 223
           S    +               P+      ++        P T   P  P P   +  +PP
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 224 PPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPS 261
              T        +  P+   T                +
Sbjct: 63  DTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEA 100

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 41.7 bits (97), Expect = 5e-04
 Identities = 19/102 (18%), Positives = 29/102 (28%), Gaps = 2/102 (1%)

Query: 161 RSPPSVP-PQNPPPP-PSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSS 218
            S           P       P  S  +  +   + + PP T   P P  P AP   N  
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 219 PNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSP 260
                    +R+   P  P  ++            PE+ +S 
Sbjct: 63  DTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASA 104

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 68.4 bits (168), Expect = 5e-13
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 15/91 (16%)

Query: 363 VKATDGFAD------------QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREF 410
           V A D F                 +G+G FG V  G    G +VA+K +K       + F
Sbjct: 5   VAAQDEFYRSGWALNMKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIK--NDATAQAF 61

Query: 411 KAEVEIISRIHHRHLVSLVGYCISDDRRLLI 441
            AE  +++++ H +LV L+G  + +   L I
Sbjct: 62  LAEASVMTQLRHSNLVQLLGVIVEEKGGLYI 92

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 68.4 bits (168), Expect = 6e-13
 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 7/80 (8%)

Query: 375 LGEGGFGSVYKGYLPDGRE------VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVS 427
           LGE  FG VYKG+L           VAIK LK       R EF+ E  + +R+ H ++V 
Sbjct: 17  LGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVC 76

Query: 428 LVGYCISDDRRLLIYDYVPN 447
           L+G    D    +I+ Y  +
Sbjct: 77  LLGVVTKDQPLSMIFSYCSH 96

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 68.5 bits (168), Expect = 7e-13
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 7/80 (8%)

Query: 375 LGEGGFGSVYKGYLPDGRE------VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVS 427
           LG+G FG VY+G      +      VAIK +       ER EF  E  ++   +  H+V 
Sbjct: 33  LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVR 92

Query: 428 LVGYCISDDRRLLIYDYVPN 447
           L+G        L+I + +  
Sbjct: 93  LLGVVSQGQPTLVIMELMTR 112

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 68.6 bits (168), Expect = 8e-13
 Identities = 34/156 (21%), Positives = 59/156 (37%), Gaps = 32/156 (20%)

Query: 308 MPSPLGSSSTTDSSYIKTQSSAPLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATD 367
           +  P  S  TT    I   +++   GSG G   +                    +V    
Sbjct: 5   LDRPFISEGTTLKDLIYDMTTS---GSGSGLPLLVQRTIA------------RTIVL--- 46

Query: 368 GFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEI--ISRIHHRHL 425
               Q  +G+G FG V++G    G EVA+K       + ER +  E EI     + H ++
Sbjct: 47  ----QESIGKGRFGEVWRGKW-RGEEVAVKIFS---SREERSWFREAEIYQTVMLRHENI 98

Query: 426 VSLVGYCISDDRR----LLIYDYVPNNTLYFHLHGK 457
           +  +     D+       L+ DY  + +L+ +L+  
Sbjct: 99  LGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRY 134

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 68.1 bits (167), Expect = 8e-13
 Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 5/75 (6%)

Query: 372 QNLLGEGGFGSVYKGYLPDGRE----VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLV 426
             ++G+G FG VY G   D  +     AIK L       +   F  E  ++  ++H +++
Sbjct: 26  DRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVL 85

Query: 427 SLVGYCISDDRRLLI 441
           +L+G  +  +    +
Sbjct: 86  ALIGIMLPPEGLPHV 100

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 67.6 bits (166), Expect = 9e-13
 Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V  G      +VAIK +K  G   E EF  E +++  + H  LV L G C  
Sbjct: 32  LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK 90

Query: 435 DDRRLLIYDYVPNNTL 450
                +I +Y+ N  L
Sbjct: 91  QRPIFIITEYMANGCL 106

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 68.2 bits (167), Expect = 1e-12
 Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 20/168 (11%)

Query: 288 VVWCLRRRKKEVSGLNGVYIMPSPLGSSSTTDSSYIKTQSSAPLIGSGPGSDFVNSPQDP 347
                     ++     +Y   +      + +    K ++S  +    P   F       
Sbjct: 3   YYHHHHHHDYDIPTTENLYFQGAMGSELQSPEYKLSKLRTSTIMTDYNPNYCFAGKTSSI 62

Query: 348 GGLGH-SRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGR------EVAIKQLK 400
             L    R   T                LG G FG VY+G +          +VA+K L 
Sbjct: 63  SDLKEVPRKNITLIRG------------LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLP 110

Query: 401 IGGGQGER-EFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPN 447
               + +  +F  E  IIS+ +H+++V  +G  +    R ++ + +  
Sbjct: 111 EVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAG 158

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 67.6 bits (166), Expect = 1e-12
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 7/87 (8%)

Query: 375 LGEGGFGSVYKG-YLPDGRE----VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVSL 428
           LG G FG+VYKG ++P+G +    VAIK+L+         E   E  +++ + + H+  L
Sbjct: 23  LGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRL 82

Query: 429 VGYCISDDRRLLIYDYVPNNTLYFHLH 455
           +G C       LI   +P   L  ++ 
Sbjct: 83  LGIC-LTSTVQLITQLMPFGCLLDYVR 108

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 8/81 (9%)

Query: 375 LGEGGFGSVYKGYLPDGRE------VAIKQLKIGGGQGER-EFKAEVEIISRI-HHRHLV 426
           LG G FG V         +      VA+K LK      ER    +E+++++++  H ++V
Sbjct: 53  LGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIV 112

Query: 427 SLVGYCISDDRRLLIYDYVPN 447
           +L+G C       LI++Y   
Sbjct: 113 NLLGACTLSGPIYLIFEYCCY 133

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 66.5 bits (163), Expect = 2e-12
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 6/87 (6%)

Query: 373 NLLGEGGFGSVYKG-YLPDGREVAIKQL---KIGGGQGEREFKAEVEIISRIHHRHLVSL 428
             LG+G FG+VY          +A+K L   ++     E + + EVEI S + H +++ L
Sbjct: 15  RPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRL 74

Query: 429 VGYCISDDRRL-LIYDYVPNNTLYFHL 454
            GY   D  R+ LI +Y P  T+Y  L
Sbjct: 75  YGY-FHDATRVYLILEYAPLGTVYREL 100

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 67.5 bits (165), Expect = 2e-12
 Identities = 34/155 (21%), Positives = 67/155 (43%), Gaps = 18/155 (11%)

Query: 292 LRRRKKEVSGLNGVYIMPSPLGSSSTTDSSYIKTQSSAPLIGSGPGSDFVNSPQDPGGLG 351
           + R    + G+  +  + + L   + +++ Y +  ++  +  S    + V + Q    +G
Sbjct: 27  VPRGSPGLDGICSIEELSTSLYKKAGSENLYFQGANTVHIDLSALNPELVQAVQHVV-IG 85

Query: 352 HSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYL--PDGRE--VAIKQLKIGGGQGE 407
            S  +  + E+            +G G FG VY G L   DG++   A+K L      GE
Sbjct: 86  PSSLIVHFNEV------------IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGE 133

Query: 408 R-EFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI 441
             +F  E  I+    H +++SL+G C+  +   L+
Sbjct: 134 VSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV 168

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 375 LGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVSLVGYC 432
           +G G FG V+ G L  D   VA+K  +       + +F  E  I+ +  H ++V L+G C
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC 181

Query: 433 ISDDRRLLIYDYVPN 447
                  ++ + V  
Sbjct: 182 TQKQPIYIVMELVQG 196

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 5/81 (6%)

Query: 372 QNLLGEGGFGSVYKGYL-PDGRE--VAIKQLKIGGGQGER-EFKAEVEIISRI-HHRHLV 426
           Q+++GEG FG V K  +  DG     AIK++K    + +  +F  E+E++ ++ HH +++
Sbjct: 30  QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNII 89

Query: 427 SLVGYCISDDRRLLIYDYVPN 447
           +L+G C       L  +Y P+
Sbjct: 90  NLLGACEHRGYLYLAIEYAPH 110

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 66.5 bits (163), Expect = 2e-12
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 375 LGEGGFGSVYKGYL--PDGRE--VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVSLV 429
           LGEG FG VY+G      G +  VA+K  K       + +F +E  I+  + H H+V L+
Sbjct: 20  LGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLI 79

Query: 430 GYCISDDRRLLIYDYVPN 447
           G    ++   +I +  P 
Sbjct: 80  GII-EEEPTWIIMELYPY 96

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 66.1 bits (162), Expect = 3e-12
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 375 LGEGGFGSVYKGYL--PDGRE--VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVSLV 429
           +GEG FG V++G    P+     VAIK  K       R +F  E   + +  H H+V L+
Sbjct: 23  IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 82

Query: 430 GYCISDDRRLLIYDYVPNNTL 450
           G   +++   +I +      L
Sbjct: 83  GVI-TENPVWIIMELCTLGEL 102

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYC 432
            LGEGGF  V     L DG   A+K++     Q   E + E ++    +H +++ LV YC
Sbjct: 36  KLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYC 95

Query: 433 ISDDRR----LLIYDYVPNNTLYFHL 454
           + +        L+  +    TL+  +
Sbjct: 96  LRERGAKHEAWLLLPFFKRGTLWNEI 121

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 66.2 bits (162), Expect = 4e-12
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 7/80 (8%)

Query: 375 LGEGGFGSVYKGYLPDGR------EVAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVS 427
           LG G FG VY+G +          +VA+K L     + +  +F  E  IIS+ +H+++V 
Sbjct: 38  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 97

Query: 428 LVGYCISDDRRLLIYDYVPN 447
            +G  +    R ++ + +  
Sbjct: 98  CIGVSLQSLPRFILMELMAG 117

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 65.7 bits (161), Expect = 4e-12
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 375 LGEGGFGSVYKGYLPDGRE---VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVSLVG 430
           LG G FGSV +G     ++   VAIK LK G  + +  E   E +I+ ++ + ++V L+G
Sbjct: 18  LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIG 77

Query: 431 YCISDDRRLLIYDYVPN 447
            C   +  +L+ +    
Sbjct: 78  VC-QAEALMLVMEMAGG 93

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 65.7 bits (161), Expect = 6e-12
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 8/81 (9%)

Query: 375 LGEGGFGSVYKGYLPDGRE------VAIKQLKIGGGQGER-EFKAEVEIISRI-HHRHLV 426
           LG G FG V +       +      VA+K LK      ER    +E++++S + +H ++V
Sbjct: 31  LGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIV 90

Query: 427 SLVGYCISDDRRLLIYDYVPN 447
           +L+G C      L+I +Y   
Sbjct: 91  NLLGACTIGGPTLVITEYCCY 111

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 65.4 bits (160), Expect = 7e-12
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 14/105 (13%)

Query: 357 FTYEELVKATDGFAD---------QNLLGEGGFGSVYKGYL--PDGRE--VAIKQLKIGG 403
            TYEE  +A   F           + ++G G  G V  G L  P  R+  VAIK LK G 
Sbjct: 30  HTYEEPGRAGRSFTREIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGY 89

Query: 404 GQGER-EFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPN 447
            + +R +F +E  I+ +  H +++ L G        +++ +Y+ N
Sbjct: 90  TERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMEN 134

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 66.3 bits (161), Expect = 7e-12
 Identities = 24/137 (17%), Positives = 37/137 (27%), Gaps = 2/137 (1%)

Query: 51  TSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNP 110
                     +    S+   SS  + +   +   P+  P   P   SP  +  P    + 
Sbjct: 2   AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSS 61

Query: 111 PTR--SPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPP 168
           P     PP    + P           P       +P  + P  P SS E  K        
Sbjct: 62  PINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGV 121

Query: 169 QNPPPPPSSSPPKNSPP 185
              P  PS +    +  
Sbjct: 122 LKVPAHPSGNMASFTKH 138

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 63.6 bits (154), Expect = 5e-11
 Identities = 27/137 (19%), Positives = 39/137 (28%), Gaps = 3/137 (2%)

Query: 28  PPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTS 87
                 +    S         PT     + P+ +P       +     S     S+P   
Sbjct: 6   HHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPING 65

Query: 88  SPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSN 147
             PP    SSP     P  +S P T +    + +P  +SP +P S      PP       
Sbjct: 66  MGPPFSVISSP---MGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVL 122

Query: 148 LPPPPPSSVEPPKRSPP 164
             P  PS          
Sbjct: 123 KVPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 63.6 bits (154), Expect = 5e-11
 Identities = 28/138 (20%), Positives = 34/138 (24%), Gaps = 3/138 (2%)

Query: 38  SSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASS 97
           +      V             +   PT     A+     S  P    P     P    SS
Sbjct: 2   AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSS 61

Query: 98  PPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVE 157
           P     PP        SP  P S   P +P    S        P NP S+     P    
Sbjct: 62  PINGMGPPF---SVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGL 118

Query: 158 PPKRSPPSVPPQNPPPPP 175
                 P+ P  N     
Sbjct: 119 NGVLKVPAHPSGNMASFT 136

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 62.0 bits (150), Expect = 2e-10
 Identities = 22/135 (16%), Positives = 32/135 (23%), Gaps = 1/135 (0%)

Query: 11  ANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPA 70
            +       + +    S     +     + P    S  P    P    +     SS    
Sbjct: 6   HHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPING 65

Query: 71  SSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSP 130
             PP S       P + S P +P        SP       P  S          N     
Sbjct: 66  MGPPFSVISSPMGPHSMSVPTTPTLGFSTG-SPQLSSPMNPVSSSEDIKPPLGLNGVLKV 124

Query: 131 PSDPPANSPPPSNPP 145
           P+ P  N    +   
Sbjct: 125 PAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 61.7 bits (149), Expect = 2e-10
 Identities = 23/132 (17%), Positives = 32/132 (24%)

Query: 73  PPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPS 132
                     +   +S   SP            P   P   SP    S     S P    
Sbjct: 7   HHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGM 66

Query: 133 DPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPP 192
            PP +       P ++  P   ++     SP    P NP        P       + VP 
Sbjct: 67  GPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPA 126

Query: 193 SNVPPPPTQTPP 204
                  + T  
Sbjct: 127 HPSGNMASFTKH 138

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 60.9 bits (147), Expect = 3e-10
 Identities = 20/133 (15%), Positives = 34/133 (25%)

Query: 48  PPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPV 107
                      ++   +S + P      ++P    +       P    S   T+S P   
Sbjct: 6   HHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPING 65

Query: 108 SNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVP 167
             PP      P      + P +P       SP  S+P + +                 VP
Sbjct: 66  MGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVP 125

Query: 168 PQNPPPPPSSSPP 180
                   S +  
Sbjct: 126 AHPSGNMASFTKH 138

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 59.7 bits (144), Expect = 8e-10
 Identities = 29/142 (20%), Positives = 41/142 (28%), Gaps = 7/142 (4%)

Query: 13  SSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSP--PA 70
                    +    S      N   +SP        P+  P   P   +P    SP    
Sbjct: 3   HHHHHHVDDDDKMFSTQV---NSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTL 59

Query: 71  SSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSP 130
           SSP     PP S   +   P S    + PT+       +P   SP  P S+     PP  
Sbjct: 60  SSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTG--SPQLSSPMNPVSSSEDIKPPLG 117

Query: 131 PSDPPANSPPPSNPPSNLPPPP 152
            +        PS   ++     
Sbjct: 118 LNGVLKVPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 59.3 bits (143), Expect = 1e-09
 Identities = 21/138 (15%), Positives = 35/138 (25%), Gaps = 2/138 (1%)

Query: 55  PSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRS 114
                 +        ++   +S   P      ++P   P     P I  P  + +P +  
Sbjct: 2   AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLG--PGIGSPGQLHSPISTL 59

Query: 115 PPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPP 174
             P +   PP S  S P  P + S P +         P  S      S            
Sbjct: 60  SSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLN 119

Query: 175 PSSSPPKNSPPAPIAVPP 192
                P +      +   
Sbjct: 120 GVLKVPAHPSGNMASFTK 137

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 58.2 bits (140), Expect = 3e-09
 Identities = 23/131 (17%), Positives = 31/131 (23%)

Query: 1   MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS 60
           +           +SS   P       +P    S  P    P    S   T S P +    
Sbjct: 9   VDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGP 68

Query: 61  NPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSS 120
                SSP      +    P     T SP  S P +   +     P          P   
Sbjct: 69  PFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHP 128

Query: 121 TPPPNSPPSPP 131
           +    S     
Sbjct: 129 SGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 57.4 bits (138), Expect = 5e-09
 Identities = 19/128 (14%), Positives = 32/128 (25%), Gaps = 1/128 (0%)

Query: 102 SPPPPVSNPPTRSPPPPSSTPPPNSP-PSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPK 160
                 S     S   P+      +P   P   P   SP   + P +    P + + PP 
Sbjct: 11  DDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPF 70

Query: 161 RSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPN 220
               S    +    P++     S  +P    P N         P        +       
Sbjct: 71  SVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSG 130

Query: 221 SPPPPSTK 228
           +    +  
Sbjct: 131 NMASFTKH 138

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 55.5 bits (133), Expect = 2e-08
 Identities = 17/133 (12%), Positives = 34/133 (25%)

Query: 110 PPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQ 169
                      +   NS  + P+   + + P  +P        P  +  P  +  S    
Sbjct: 6   HHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPING 65

Query: 170 NPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKR 229
             PP    S P       +   P+      +    +P +P++       P          
Sbjct: 66  MGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVP 125

Query: 230 LSPPPGIPVPSTE 242
             P   +   +  
Sbjct: 126 AHPSGNMASFTKH 138

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 55.5 bits (133), Expect = 2e-08
 Identities = 24/142 (16%), Positives = 33/142 (23%), Gaps = 4/142 (2%)

Query: 81  ASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPP 140
           A +            S+    S   P       +P    S  P    P     P +    
Sbjct: 2   AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSS 61

Query: 141 PSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPT 200
           P N       PP S +  P        P  P    S+  P+ S P        ++ PP  
Sbjct: 62  PINGMG----PPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLG 117

Query: 201 QTPPTPASPIAPRPSNSSPNSP 222
                           S     
Sbjct: 118 LNGVLKVPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 54.0 bits (129), Expect = 5e-08
 Identities = 24/136 (17%), Positives = 38/136 (27%)

Query: 120 STPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSP 179
           +    +                   P+        S+ P        P Q   P  + S 
Sbjct: 2   AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSS 61

Query: 180 PKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVP 239
           P N    P +V  S + P     P TP    +      S    P  S++ + PP G+   
Sbjct: 62  PINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGV 121

Query: 240 STENTPGNGTNPSSPE 255
                  +G   S  +
Sbjct: 122 LKVPAHPSGNMASFTK 137

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 51.3 bits (122), Expect = 4e-07
 Identities = 22/137 (16%), Positives = 36/137 (26%), Gaps = 5/137 (3%)

Query: 103 PPPPVSNPPTRSPPPPSSTPPPNSP--PSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPK 160
                 +    S    SS   P      + PS  P+  P     P  L  P  +   P  
Sbjct: 6   HHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIG-SPGQLHSPISTLSSPIN 64

Query: 161 RSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPN 220
              P     + P  P S     +P    +     +  P    P + +  I P    +   
Sbjct: 65  GMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPM--NPVSSSEDIKPPLGLNGVL 122

Query: 221 SPPPPSTKRLSPPPGIP 237
             P   +  ++      
Sbjct: 123 KVPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 49.3 bits (117), Expect = 2e-06
 Identities = 20/125 (16%), Positives = 31/125 (24%), Gaps = 1/125 (0%)

Query: 138 SPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPS-SSPPKNSPPAPIAVPPSNVP 196
                +          S   P  R   + P  +P   P   SP +   P      P N  
Sbjct: 7   HHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGM 66

Query: 197 PPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPES 256
            PP     +P  P +     +        S +  SP   +        P          +
Sbjct: 67  GPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPA 126

Query: 257 SSSPS 261
             S +
Sbjct: 127 HPSGN 131

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 41.6 bits (97), Expect = 4e-04
 Identities = 21/99 (21%), Positives = 35/99 (35%)

Query: 163 PPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSP 222
              V   +       +    SP    ++   ++ P       +P    +P  + SSP + 
Sbjct: 6   HHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPING 65

Query: 223 PPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPS 261
             P    +S P G    S   TP  G +  SP+ SS  +
Sbjct: 66  MGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMN 104

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 64.5 bits (158), Expect = 8e-12
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS 434
           LG G FG V+ GY     +VA+K LK G    +  F AE  ++ ++ H+ LV L     +
Sbjct: 21  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPD-AFLAEANLMKQLQHQRLVRLYAVV-T 78

Query: 435 DDRRLLIYDYVPN 447
            +   +I +Y+ N
Sbjct: 79  QEPIYIITEYMEN 91

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 64.6 bits (158), Expect = 9e-12
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 7/68 (10%)

Query: 375 LGEGGFGSVYKGYL--PDGRE--VAIKQLKIG---GGQGEREFKAEVEIISRIHHRHLVS 427
           LG+G FG V +G    P G+   VA+K LK       +   +F  EV  +  + HR+L+ 
Sbjct: 26  LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 85

Query: 428 LVGYCISD 435
           L G  ++ 
Sbjct: 86  LYGVVLTP 93

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 7/90 (7%)

Query: 372 QNLLGEGGFGSVYKG-YLPDGR----EVAIKQLKIGGGQGER-EFKAEVEIISRIHHRHL 425
             +LG G FG+V+KG ++P+G      V IK ++   G+         +  I  + H H+
Sbjct: 18  LKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHI 77

Query: 426 VSLVGYCISDDRRLLIYDYVPNNTLYFHLH 455
           V L+G C       L+  Y+P  +L  H+ 
Sbjct: 78  VRLLGLC-PGSSLQLVTQYLPLGSLLDHVR 106

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 372 QNLLGEGGFGSVYKGYLPDGRE----VAIKQLKIGGGQGER--EFKAEVEIISRIHHRHL 425
             +LG+G FGSV +  L         VA+K LK          EF  E   +    H H+
Sbjct: 28  GRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHV 87

Query: 426 VSLVGYCISDD 436
             LVG  +   
Sbjct: 88  AKLVGVSLRSR 98

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%)

Query: 372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGY 431
              +G+G FG V  G    G +VA+K +K       + F AE  +++++ H +LV L+G 
Sbjct: 198 LQTIGKGEFGDVMLGDY-RGNKVAVKCIK--NDATAQAFLAEASVMTQLRHSNLVQLLGV 254

Query: 432 CISDDRRLLI 441
            + +   L I
Sbjct: 255 IVEEKGGLYI 264

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 8/83 (9%)

Query: 373 NLLGEGGFGSVYKGYLPDGRE------VAIKQLKIGGGQGER-EFKAEVEIISRI-HHRH 424
             LG G FG V +       +      VA+K LK      E+    +E++I+S +  H +
Sbjct: 52  KTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHEN 111

Query: 425 LVSLVGYCISDDRRLLIYDYVPN 447
           +V+L+G C      L+I +Y   
Sbjct: 112 IVNLLGACTHGGPVLVITEYCCY 134

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 63.8 bits (156), Expect = 2e-11
 Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 12/104 (11%)

Query: 375 LGEGGFGSVYKGYLPDGR-EVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCI 433
           LG G +G VY+G        VA+K LK    + E EF  E  ++  I H +LV L+G C 
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVE-EFLKEAAVMKEIKHPNLVQLLGVCT 79

Query: 434 SDDRRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVL 477
            +    +I +++    L  +L          R  N   +   VL
Sbjct: 80  REPPFYIITEFMTYGNLLDYL----------RECNRQEVSAVVL 113

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 6/89 (6%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYC 432
           +LG+G +G VY G  L +   +AIK++     +  +    E+ +   + H+++V  +G  
Sbjct: 29  VLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLG-S 87

Query: 433 ISDDRRLLIY-DYVPN---NTLYFHLHGK 457
            S++  + I+ + VP    + L     G 
Sbjct: 88  FSENGFIKIFMEQVPGGSLSALLRSKWGP 116

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 63.8 bits (156), Expect = 2e-11
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 375 LGEGGFGSVYKGYLPDGR---EVAIKQLKIG--GGQGEREFKAEVEIISRIHHRHLVSLV 429
           LG G FG+V KGY    +    VA+K LK        + E  AE  ++ ++ + ++V ++
Sbjct: 25  LGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMI 84

Query: 430 GYCISDDRRLLIYDYVPN 447
           G C   +  +L+ +    
Sbjct: 85  GIC-EAESWMLVMEMAEL 101

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 63.7 bits (156), Expect = 2e-11
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 6/89 (6%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQL---KIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           LLG+G F  VY+   +  G EVAIK +    +      +  + EV+I  ++ H  ++ L 
Sbjct: 18  LLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELY 77

Query: 430 GYCISDDRRL-LIYDYVPNNTLYFHLHGK 457
            Y   D   + L+ +   N  +  +L  +
Sbjct: 78  NY-FEDSNYVYLVLEMCHNGEMNRYLKNR 105

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 5/78 (6%)

Query: 375 LGEGGFGSVYKGYL--PDGRE--VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVSLV 429
           +G G FG V  G L  P  +E  VAIK LK+G  + +R +F  E  I+ +  H +++ L 
Sbjct: 53  VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLE 112

Query: 430 GYCISDDRRLLIYDYVPN 447
           G        +++ +Y+ N
Sbjct: 113 GVVTKSKPVMIVTEYMEN 130

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGY 431
           +  LG G FG V+        +VA+K +K  G      F AE  ++  + H  LV L   
Sbjct: 193 EKKLGAGQFGEVWMATYNKHTKVAVKTMK-PGSMSVEAFLAEANVMKTLQHDKLVKLHAV 251

Query: 432 CISDDRRLLIYDYVPNNTLYFHL 454
             + +   +I +++   +L   L
Sbjct: 252 V-TKEPIYIITEFMAKGSLLDFL 273

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 10/86 (11%)

Query: 375 LGEGGFGSVYKGYLPDGRE--------VAIKQLKIGGGQGER-EFKAEVEIISRI-HHRH 424
           LGEG FG V         +        VA+K LK    + +  +  +E+E++  I  H++
Sbjct: 43  LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102

Query: 425 LVSLVGYCISDDRRLLIYDYVPNNTL 450
           +++L+G C  D    +I +Y     L
Sbjct: 103 IINLLGACTQDGPLYVIVEYASKGNL 128

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 64.0 bits (156), Expect = 4e-11
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGY 431
           +  LG+G FG V+ G       VAIK LK  G      F  E +++ ++ H  LV L   
Sbjct: 189 EVKLGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQLYAV 247

Query: 432 CISDDRRLLIYDYVPN 447
             S++   ++ +Y+  
Sbjct: 248 V-SEEPIYIVTEYMSK 262

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 10/86 (11%)

Query: 375 LGEGGFGSVYKGYLPDGRE--------VAIKQLKIGGGQGER-EFKAEVEIISRI-HHRH 424
           LGEG FG V         +        VA+K LK    + +  +  +E+E++  I  H++
Sbjct: 89  LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 148

Query: 425 LVSLVGYCISDDRRLLIYDYVPNNTL 450
           +++L+G C  D    +I +Y     L
Sbjct: 149 IINLLGACTQDGPLYVIVEYASKGNL 174

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 6/79 (7%)

Query: 375 LGEGGFGSVYKGYL--PDGRE---VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVSL 428
           +G G FG VYKG L    G++   VAIK LK G  + +R +F  E  I+ +  H +++ L
Sbjct: 52  IGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRL 111

Query: 429 VGYCISDDRRLLIYDYVPN 447
            G        ++I +Y+ N
Sbjct: 112 EGVISKYKPMMIITEYMEN 130

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 62.4 bits (152), Expect = 6e-11
 Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 12/100 (12%)

Query: 354 RSMFTYEELVKATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGERE-FK 411
           R +  +E +            LG GGFG V++     D    AIK++++   +  RE   
Sbjct: 2   RYLTDFEPI----------QCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVM 51

Query: 412 AEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLY 451
            EV+ ++++ H  +V      +  +    +    P   LY
Sbjct: 52  REVKALAKLEHPGIVRYFNAWLEKNTTEKLQPSSPKVYLY 91

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 62.7 bits (153), Expect = 6e-11
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 7/87 (8%)

Query: 375 LGEGGFGSVYKGYLPDGRE-----VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVSL 428
           LG G FG+VYKG      E     VAIK+L+         E   E  +++ + + H+  L
Sbjct: 23  LGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRL 82

Query: 429 VGYCISDDRRLLIYDYVPNNTLYFHLH 455
           +G C       LI   +P   L  ++ 
Sbjct: 83  LGIC-LTSTVQLITQLMPFGCLLDYVR 108

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 63.4 bits (154), Expect = 6e-11
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 375 LGEGGFGSVYKGYLPDGRE---VAIKQLKIGGGQGER-EFKAEVEIISRIHHRHLVSLVG 430
           LG G FGSV +G     ++   VAIK LK G  + +  E   E +I+ ++ + ++V L+G
Sbjct: 344 LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIG 403

Query: 431 YCISDDRRLLIYDYVPN 447
            C   +  +L+ +    
Sbjct: 404 VC-QAEALMLVMEMAGG 419

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 62.8 bits (153), Expect = 6e-11
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 10/86 (11%)

Query: 375 LGEGGFGSVYKGYLPD--------GREVAIKQLKIGGGQGER-EFKAEVEIISRI-HHRH 424
           LGEG FG V                 +VA+K LK    + +  +  +E+E++  I  H++
Sbjct: 77  LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 136

Query: 425 LVSLVGYCISDDRRLLIYDYVPNNTL 450
           +++L+G C  D    +I +Y     L
Sbjct: 137 IINLLGACTQDGPLYVIVEYASKGNL 162

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 62.3 bits (152), Expect = 7e-11
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 9/85 (10%)

Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQLKIGGGQGER-EFKAEVEIISRI-HHRHLV 426
           LG G FG V +            R VA+K LK G    E     +E++I+  I HH ++V
Sbjct: 35  LGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVV 94

Query: 427 SLVGYCISDDR-RLLIYDYVPNNTL 450
           +L+G C       ++I ++     L
Sbjct: 95  NLLGACTKPGGPLMVIVEFCKFGNL 119

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 62.0 bits (151), Expect = 8e-11
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 7/84 (8%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGE--REFKAEVEIISRIHHRHLVSLVG 430
            +G G F +VYKG       EVA  +L+         + FK E E++  + H ++V    
Sbjct: 33  EIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYD 92

Query: 431 YCIS---DDRRLLIY-DYVPNNTL 450
              S     + +++  + + + TL
Sbjct: 93  SWESTVKGKKCIVLVTELMTSGTL 116

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 6/86 (6%)

Query: 374 LLGEGGFGSVYKG-YLPDGREVAIKQL---KIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
            LG+G FG+VY      +   +A+K L   ++     E + + E+EI S + H +++ + 
Sbjct: 21  PLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMY 80

Query: 430 GYCISDDRRL-LIYDYVPNNTLYFHL 454
            Y   D +R+ L+ ++ P   LY  L
Sbjct: 81  NY-FHDRKRIYLMLEFAPRGELYKEL 105

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 60.0 bits (146), Expect = 4e-10
 Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 6/93 (6%)

Query: 367 DGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKA---EVEIISRIHH 422
             F  +  +G G F  VY+   L DG  VA+K+++I      +       E++++ +++H
Sbjct: 32  ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNH 91

Query: 423 RHLVSLVGYCISDDRRLLIY-DYVPNNTLYFHL 454
            +++      I D+  L I  +      L   +
Sbjct: 92  PNVIKYYASFIEDN-ELNIVLELADAGDLSRMI 123

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 60.0 bits (145), Expect = 5e-10
 Identities = 18/120 (15%), Positives = 38/120 (31%), Gaps = 15/120 (12%)

Query: 347 PGGLGHSRSMFTYE---ELVKATDGFADQNLLGEGGFGSVYKGY------LPDGREVAIK 397
           P        +   +   E    +      +LLGEG F  VY+          + ++  +K
Sbjct: 42  PNTFEWQCKLPAIKPKTEFQLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLK 101

Query: 398 QLKIGGGQGEREFKAEVEIISRI---HHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHL 454
             K        EF    +++ R+        +      +  +  +L+ +     TL   +
Sbjct: 102 VQKP---ANPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAI 158

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 59.7 bits (145), Expect = 6e-10
 Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 4/102 (3%)

Query: 333 GSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATD---GFADQNLLGEGGFGSVYKGY-L 388
            SG      N     G + H +       +V   D          +GEG  G V      
Sbjct: 8   SSGVDLGTENLYFQSGVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREK 67

Query: 389 PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVG 430
             GR+VA+K + +   Q       EV I+    H ++V +  
Sbjct: 68  HSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVEMYK 109

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 59.6 bits (144), Expect = 6e-10
 Identities = 24/157 (15%), Positives = 40/157 (25%), Gaps = 4/157 (2%)

Query: 40  PPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPP 99
                V +   +    S    N  ++S     +     P      P  + P S       
Sbjct: 5   EAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHG 64

Query: 100 TISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPP 159
           ++       + P+R+       P  +SP S       +S   S+P S     P   +E  
Sbjct: 65  SLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPAS----IPHLILELL 120

Query: 160 KRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVP 196
           K  P     Q            N            + 
Sbjct: 121 KCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMC 157

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 58.5 bits (141), Expect = 1e-09
 Identities = 21/142 (14%), Positives = 36/142 (25%), Gaps = 7/142 (4%)

Query: 5   SPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPT 64
              P     SS    + +     P    + PP      P V+ P + + PP        T
Sbjct: 12  QAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQT 71

Query: 65  SSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPP-------VSNPPTRSPPP 117
               P+ +  +  P P ++ P S    S   S   +     P          P       
Sbjct: 72  YGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEPDEPQVQA 131

Query: 118 PSSTPPPNSPPSPPSDPPANSP 139
                      +       ++ 
Sbjct: 132 KIMAYLQQEQANRSKHEKLSTF 153

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 58.1 bits (140), Expect = 2e-09
 Identities = 18/154 (11%), Positives = 34/154 (22%), Gaps = 12/154 (7%)

Query: 21  SNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP--PTSSSPPASSPPTSSP 78
           +    I   P       +       SK    +    PP      P  +SP + + P    
Sbjct: 6   AMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGS 65

Query: 79  PPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNS----------PP 128
                     P  +  +  P   +  P      +      +S+P              P 
Sbjct: 66  LQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEPD 125

Query: 129 SPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRS 162
            P       +       +       S+     + 
Sbjct: 126 EPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKM 159

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 54.2 bits (130), Expect = 4e-08
 Identities = 23/150 (15%), Positives = 32/150 (21%), Gaps = 4/150 (2%)

Query: 82  SNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSS---TPPPNSPPSPPSDPPANS 138
           +        PS    S    +        P      P +     P  + P   + PP  S
Sbjct: 6   AMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGS 65

Query: 139 PPPSNPPSNLPPPPPSSVEP-PKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPP 197
                   + P     S  P P  S P             +    S P  I       P 
Sbjct: 66  LQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEPD 125

Query: 198 PPTQTPPTPASPIAPRPSNSSPNSPPPPST 227
            P       A     + + S          
Sbjct: 126 EPQVQAKIMAYLQQEQANRSKHEKLSTFGL 155

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 54.2 bits (130), Expect = 4e-08
 Identities = 16/150 (10%), Positives = 27/150 (18%)

Query: 67  SPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNS 126
           +         S    S+   +    S          PP      P  + P   + PP  S
Sbjct: 6   AMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGS 65

Query: 127 PPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPA 186
                +     S    +   +     P S+                 P          P 
Sbjct: 66  LQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEPD 125

Query: 187 PIAVPPSNVPPPPTQTPPTPASPIAPRPSN 216
              V    +     +               
Sbjct: 126 EPQVQAKIMAYLQQEQANRSKHEKLSTFGL 155

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 24/133 (18%), Positives = 35/133 (26%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
           S+      +A+   P    + PPT     P    P S   PP  S     +    P  + 
Sbjct: 21  SSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAI 80

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
                 P  SSP +       +   +S P S P      +   P       +        
Sbjct: 81  KSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEPDEPQVQAKIMAYLQQE 140

Query: 122 PPPNSPPSPPSDP 134
               S     S  
Sbjct: 141 QANRSKHEKLSTF 153

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 26/180 (14%), Positives = 39/180 (21%), Gaps = 5/180 (2%)

Query: 113 RSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPP 172
           +            S  +  S            P N    PP+  +        +    PP
Sbjct: 3   KLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPP 62

Query: 173 PPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLS- 231
                           A+      P  +                SSP S P    + L  
Sbjct: 63  HGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKC 122

Query: 232 --PPPGIPVPSTENTPGNGTNPSSPESSSSPSNNGIGTAGTVVIAV--AVGIIAFSLIGL 287
               P +             N S  E  S+          T+   V  A   I F  + +
Sbjct: 123 EPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKV 182

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 47.3 bits (112), Expect = 5e-06
 Identities = 21/153 (13%), Positives = 35/153 (22%), Gaps = 15/153 (9%)

Query: 91  PSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSD---PPANSPPPSNPPSN 147
            +          P     +   ++    S   P N    PP+D    P  + P S     
Sbjct: 5   EAMSQVIQAM--PSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMP- 61

Query: 148 LPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQT----- 202
            P       +     P        P P +SSP      + +    ++ P           
Sbjct: 62  -PHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELL 120

Query: 203 ---PPTPASPIAPRPSNSSPNSPPPPSTKRLSP 232
              P  P              +      K  + 
Sbjct: 121 KCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTF 153

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 59.3 bits (144), Expect = 6e-10
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 3/86 (3%)

Query: 369 FADQNLLGEGGFGSVYKG-YLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVS 427
           F +  +LG+G FG V K     D R  AIK+++    +      +EV +++ ++H+++V 
Sbjct: 8   FEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEK-LSTILSEVMLLASLNHQYVVR 66

Query: 428 LVG-YCISDDRRLLIYDYVPNNTLYF 452
               +    +    +      +TL+ 
Sbjct: 67  YYAAWLERRNFVKPMTAVKKKSTLFI 92

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 59.8 bits (145), Expect = 9e-10
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 372 QNLLGEGGFGSVYKG-YLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVG 430
           ++ LG G +G VY+G +      VA+K LK    + E EF  E  ++  I H +LV L+G
Sbjct: 225 KHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVE-EFLKEAAVMKEIKHPNLVQLLG 283

Query: 431 YCISDDRRLLIYDYVPN 447
            C  +    +I +++  
Sbjct: 284 VCTREPPFYIITEFMTY 300

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 60.0 bits (144), Expect = 1e-09
 Identities = 23/171 (13%), Positives = 43/171 (25%), Gaps = 4/171 (2%)

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTP 122
             +++  A++  T +         S       A+ P  +S P  V         P    P
Sbjct: 7   AAAAAAAAAAAATGTEAGPGTAGGSENGSE-VAAQPAGLSGPAEVGPGAVGERTPRKKEP 65

Query: 123 PPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKN 182
           P  SPP   ++PP ++ P + P        P      +        +           + 
Sbjct: 66  PRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEY---RE 122

Query: 183 SPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPP 233
              +   +          +          P P   +P      S       
Sbjct: 123 MDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSG 173

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 58.8 bits (141), Expect = 2e-09
 Identities = 27/163 (16%), Positives = 44/163 (26%), Gaps = 7/163 (4%)

Query: 58  PASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPP 117
            A+    +++    +         S   +         S P  + P       P +  PP
Sbjct: 7   AAAAAAAAAAAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRKKEPP 66

Query: 118 PSSTPPPNSPP---SPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVP----PQN 170
            +S P   + P   + P   P   P  + P        P      +R    V      ++
Sbjct: 67  RASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEYREMDES 126

Query: 171 PPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPR 213
                             A     +PPPP Q PP   +   P 
Sbjct: 127 LANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPE 169

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 58.8 bits (141), Expect = 2e-09
 Identities = 23/176 (13%), Positives = 45/176 (25%), Gaps = 3/176 (1%)

Query: 39  SPPPPPVSKPPTTSPP---PSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPA 95
           S      +     +      + P +   + +    ++ P     PA   P +    +P  
Sbjct: 3   SGKKAAAAAAAAAAAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRK 62

Query: 96  SSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSS 155
             PP  SPP  ++ PP  + P    T  P S     +                       
Sbjct: 63  KEPPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEYRE 122

Query: 156 VEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIA 211
           ++    +       +     + +  +   P P    P           P+     A
Sbjct: 123 MDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGVEGAA 178

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 56.5 bits (135), Expect = 1e-08
 Identities = 27/173 (15%), Positives = 43/173 (24%), Gaps = 11/173 (6%)

Query: 7   GPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKP----PTTSPPPSPPASNP 62
              AA +++                  N  + +  P  +S P    P      +P    P
Sbjct: 6   KAAAAAAAAAAAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRKKEP 65

Query: 63  PTSSSPPASSPPTSSPPPASNP--PTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSS 120
           P +S P   + P  S  P + P     S  P          +  P       R       
Sbjct: 66  PRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGI-----AETPEGRRTSRRKRAKVEY 120

Query: 121 TPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPP 173
                S  +   D   +    +         PP   + P        P+ P  
Sbjct: 121 REMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSG 173

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 54.2 bits (129), Expect = 7e-08
 Identities = 32/205 (15%), Positives = 52/205 (25%), Gaps = 13/205 (6%)

Query: 108 SNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVP 167
           +   T +   P +     +     + P   S P    P  +    P   EPP+ SPP   
Sbjct: 15  AAAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRKKEPPRASPPG-- 72

Query: 168 PQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPR---PSNSSPNSPPP 224
                 PP S+ P+  P     V P +  P  T    TP      R              
Sbjct: 73  --GLAEPPGSAGPQAGPT----VVPGSATPMETGIAETPEGRRTSRRKRAKVEYREMDES 126

Query: 225 PSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPSNNGIG--TAGTVVIAVAVGIIAF 282
            +             + +        P  P++     N       +G    A    +   
Sbjct: 127 LANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGVEGAAFQSRLPHD 186

Query: 283 SLIGLVVWCLRRRKKEVSGLNGVYI 307
            +      C             V++
Sbjct: 187 RMTSQEAACFPDIISGPQQTQKVFL 211

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 19/161 (11%), Positives = 37/161 (22%), Gaps = 5/161 (3%)

Query: 74  PTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSD 133
             ++   A+   T +   + P ++  + +     + P   S P                +
Sbjct: 7   AAAAAAAAAAAATGTE--AGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRKKE 64

Query: 134 PPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPS 193
           PP  SPP           P +       S   +       P      +        V   
Sbjct: 65  PPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRA---KVEYR 121

Query: 194 NVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPP 234
            +                 R + +      PP   +  P  
Sbjct: 122 EMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEE 162

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 46.9 bits (110), Expect = 1e-05
 Identities = 20/131 (15%), Positives = 35/131 (26%), Gaps = 7/131 (5%)

Query: 4   PSPGPPAANSSSPPPPVSNPPTISPP-------PPVSNPPKSSPPPPPVSKPPTTSPPPS 56
            +P       +SPP  ++ PP  + P       P  + P ++     P  +  +      
Sbjct: 58  RTPRKKEPPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAK 117

Query: 57  PPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPP 116
                   S +  +     S     +        P PP  +PP          P      
Sbjct: 118 VEYREMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGVEGA 177

Query: 117 PPSSTPPPNSP 127
              S  P +  
Sbjct: 178 AFQSRLPHDRM 188

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 58.8 bits (142), Expect = 1e-09
 Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 9/103 (8%)

Query: 375 LGEGGFGSVYKGYL------PDGREVAIKQLKIGGGQGER-EFKAEVEIISRI-HHRHLV 426
           LG G FG V +            R VA+K LK G    E     +E++I+  I HH ++V
Sbjct: 30  LGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVV 89

Query: 427 SLVGYCISDDRRL-LIYDYVPNNTLYFHLHGKWQLGFDIRNHN 468
           +L+G C      L +I ++     L  +L  K       +   
Sbjct: 90  NLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKG 132

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 59.6 bits (144), Expect = 1e-09
 Identities = 19/93 (20%), Positives = 27/93 (29%)

Query: 40  PPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPP 99
           P  P     P  +         P T + P   + PT  P P  N    +P P  PA    
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 100 TISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPS 132
           T++          R     ++       P P  
Sbjct: 62  TVAAGHATLREHLRDIKAENTDANFYVCPPPTG 94

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 59.2 bits (143), Expect = 2e-09
 Identities = 20/110 (18%), Positives = 27/110 (24%), Gaps = 7/110 (6%)

Query: 52  SPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPP 111
           + P SP       ++      P T +PP     PT  P P           P P   N  
Sbjct: 3   AAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNAT 62

Query: 112 TRSPPPPSSTPPPNSPPSPPSDPPANSPPPS-------NPPSNLPPPPPS 154
             +          +             PPP+         P   P  P  
Sbjct: 63  VAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEG 112

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 57.3 bits (138), Expect = 7e-09
 Identities = 15/94 (15%), Positives = 22/94 (23%), Gaps = 1/94 (1%)

Query: 34  NPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSP 93
           +P   + P  P     T +    P    PP   + P   P         NP    P    
Sbjct: 1   DPAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDN 60

Query: 94  -PASSPPTISPPPPVSNPPTRSPPPPSSTPPPNS 126
              ++                +       PPP  
Sbjct: 61  ATVAAGHATLREHLRDIKAENTDANFYVCPPPTG 94

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 55.0 bits (132), Expect = 3e-08
 Identities = 21/110 (19%), Positives = 34/110 (30%), Gaps = 5/110 (4%)

Query: 18  PPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSS 77
           P     P ++     +N   ++P PP +   PT  P P         +   PA    T +
Sbjct: 5   PTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVA 64

Query: 78  PPPASNPPTSSPPPSPPASSPPTISPPPPVS-----NPPTRSPPPPSSTP 122
              A+         +    +   + PPP  +       P R P  P    
Sbjct: 65  AGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQN 114

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 54.6 bits (131), Expect = 5e-08
 Identities = 25/112 (22%), Positives = 35/112 (31%), Gaps = 6/112 (5%)

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSP-PTISPPPPVSNPPTRSPPPPSST 121
           PTS   P  +  T +      P T +PP    A +  P         NP    P   ++T
Sbjct: 5   PTSPGTPGVAAATQAANGG--PATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNAT 62

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSV---EPPKRSPPSVPPQN 170
                           +          PPP  ++V   E P+R P     QN
Sbjct: 63  VAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQN 114

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 54.2 bits (130), Expect = 5e-08
 Identities = 19/115 (16%), Positives = 32/115 (27%), Gaps = 2/115 (1%)

Query: 68  PPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSP 127
           P A + P +    A+    +  P +P   +    + P     P     P   + P P   
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALG--AAPTGDPKPKKNKKPKNPTPPRPAGD 59

Query: 128 PSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKN 182
            +  +   A                   V PP      V  + P   P+    +N
Sbjct: 60  NATVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQN 114

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 54.2 bits (130), Expect = 6e-08
 Identities = 16/113 (14%), Positives = 27/113 (23%), Gaps = 5/113 (4%)

Query: 28  PPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTS 87
           P  P S            +     +P P    + P     P  +  P +  PP      +
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 88  SPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST-----PPPNSPPSPPSDPP 135
           +                   ++      PPP+         P   P+ P    
Sbjct: 62  TVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQN 114

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 53.8 bits (129), Expect = 8e-08
 Identities = 15/94 (15%), Positives = 27/94 (28%)

Query: 90  PPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLP 149
           P +P +   P ++     +N    +P PP+    P   P P  +    +P P  P  +  
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 150 PPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNS 183
                     +                  PP  +
Sbjct: 62  TVAAGHATLREHLRDIKAENTDANFYVCPPPTGA 95

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 51.1 bits (122), Expect = 6e-07
 Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 2/93 (2%)

Query: 118 PSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSV--PPQNPPPPP 175
           P++   P +P    +   AN  P +  P  L   P    +P K   P    PP+      
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 176 SSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPAS 208
           + +    +    +    +          P P  
Sbjct: 62  TVAAGHATLREHLRDIKAENTDANFYVCPPPTG 94

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 18/111 (16%), Positives = 29/111 (26%)

Query: 5   SPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPT 64
           +P  P     +     +N    +P PP      +  P P  +K P    PP P   N   
Sbjct: 4   APTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATV 63

Query: 65  SSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSP 115
           ++               +        P P  ++      P      P    
Sbjct: 64  AAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQN 114

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 48.8 bits (116), Expect = 3e-06
 Identities = 20/107 (18%), Positives = 29/107 (27%), Gaps = 16/107 (14%)

Query: 128 PSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAP 187
           P+ P+ P       +   +N  P  P+             P   P P  +  PKN  P  
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAP------PALGAAPTGDPKPKKNKKPKNPTP-- 53

Query: 188 IAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPP 234
                   P P        A     R       +    +   + PPP
Sbjct: 54  --------PRPAGDNATVAAGHATLREHLRDIKAENTDANFYVCPPP 92

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 48.8 bits (116), Expect = 3e-06
 Identities = 16/81 (19%), Positives = 28/81 (34%)

Query: 2  SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
          +A +       ++  PP +   PT  P P  +  PK+  PP P     T +   +    +
Sbjct: 14 AAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAAGHATLREH 73

Query: 62 PPTSSSPPASSPPTSSPPPAS 82
               +    +     PPP  
Sbjct: 74 LRDIKAENTDANFYVCPPPTG 94

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 15/95 (15%), Positives = 22/95 (23%)

Query: 170 NPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKR 229
           +P  P S   P  +     A      P PP         P   +       +PP P+   
Sbjct: 1   DPAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDN 60

Query: 230 LSPPPGIPVPSTENTPGNGTNPSSPESSSSPSNNG 264
            +   G              N  +      P    
Sbjct: 61  ATVAAGHATLREHLRDIKAENTDANFYVCPPPTGA 95

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 19/94 (20%), Positives = 27/94 (28%), Gaps = 6/94 (6%)

Query: 115 PPPPSSTPPPNSPPSPPS---DPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQN- 170
           P  P+S   P    +  +    P   +PP         P P  + +P   +PP     N 
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 171 --PPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQT 202
                  +         A        V PPPT  
Sbjct: 62  TVAAGHATLREHLRDIKAENTDANFYVCPPPTGA 95

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 17/110 (15%), Positives = 26/110 (23%), Gaps = 4/110 (3%)

Query: 133 DPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPP 192
           DP A  P     P        ++  P   +PP++       P      K   P P     
Sbjct: 1   DPAA--PTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAG 58

Query: 193 SNVPPPPTQTPPTPASPIAPRPSNSSPNS--PPPPSTKRLSPPPGIPVPS 240
            N                    +  +     PPP     +        P+
Sbjct: 59  DNATVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPT 108

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 15/96 (15%), Positives = 27/96 (28%)

Query: 177 SSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGI 236
           ++P     P   A   +    P T  PP   +     P       P  P+  R +     
Sbjct: 3   AAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNAT 62

Query: 237 PVPSTENTPGNGTNPSSPESSSSPSNNGIGTAGTVV 272
                     +  +  +  + ++       T  TVV
Sbjct: 63  VAAGHATLREHLRDIKAENTDANFYVCPPPTGATVV 98

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536

 Score = 58.2 bits (140), Expect = 3e-09
 Identities = 25/160 (15%), Positives = 39/160 (24%), Gaps = 8/160 (5%)

Query: 6   PGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTS 65
                 N  S  P      T      + +  + +   P V          +   +  P +
Sbjct: 10  RKKVMGNRRSDEPAK----TKKGLSSILDAARWNRGEPQVPDF---RHLKAEVDAEKPGA 62

Query: 66  SSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPN 125
           +         S       P   +P  S    S  +    P    P       P   P   
Sbjct: 63  TDRKGGVGMPSRDRNIGAPGQDTPGVSLHPLSLDSPDREPGADAPLELGDSSPQG-PMSL 121

Query: 126 SPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPS 165
              +PP      +   S  P +   P  S +E     PP 
Sbjct: 122 ESLAPPESTDEGAETESPEPGDEGEPGRSGLELEPEEPPG 161

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536

 Score = 57.8 bits (139), Expect = 4e-09
 Identities = 27/158 (17%), Positives = 43/158 (27%), Gaps = 6/158 (3%)

Query: 36  PKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPA 95
            K         +P  T    S          +      P      A       P  +   
Sbjct: 10  RKKVMGNRRSDEPAKTKKGLSSIL--DAARWNRGEPQVPDFRHLKAE-VDAEKPGATDRK 66

Query: 96  SSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSS 155
                 S    +  P   +   P  +  P S  SP  +P A++P      S   P    S
Sbjct: 67  GGVGMPSRDRNIGAPGQDT---PGVSLHPLSLDSPDREPGADAPLELGDSSPQGPMSLES 123

Query: 156 VEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPS 193
           + PP+ +      ++P P     P ++        PP 
Sbjct: 124 LAPPESTDEGAETESPEPGDEGEPGRSGLELEPEEPPG 161

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536

 Score = 49.3 bits (117), Expect = 2e-06
 Identities = 23/146 (15%), Positives = 32/146 (21%)

Query: 6   PGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTS 65
                  SS       N      P       +     P  +        PS   +     
Sbjct: 23  AKTKKGLSSILDAARWNRGEPQVPDFRHLKAEVDAEKPGATDRKGGVGMPSRDRNIGAPG 82

Query: 66  SSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPN 125
              P  S    S       P +  P     SSP        ++ P +      + +P P 
Sbjct: 83  QDTPGVSLHPLSLDSPDREPGADAPLELGDSSPQGPMSLESLAPPESTDEGAETESPEPG 142

Query: 126 SPPSPPSDPPANSPPPSNPPSNLPPP 151
               P        P        L PP
Sbjct: 143 DEGEPGRSGLELEPEEPPGWRELVPP 168

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536

 Score = 49.3 bits (117), Expect = 2e-06
 Identities = 22/163 (13%), Positives = 35/163 (21%), Gaps = 11/163 (6%)

Query: 81  ASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSP---------PPPSSTPPPNSPPSPP 131
             N  +  P  +    S    +       P                P +T        P 
Sbjct: 14  MGNRRSDEPAKTKKGLSSILDAARWNRGEPQVPDFRHLKAEVDAEKPGATDRKGGVGMPS 73

Query: 132 SDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPP--PPSSSPPKNSPPAPIA 189
            D    +P    P  +L P    S +    +   +   +  P  P S             
Sbjct: 74  RDRNIGAPGQDTPGVSLHPLSLDSPDREPGADAPLELGDSSPQGPMSLESLAPPESTDEG 133

Query: 190 VPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSP 232
               +  P     P      + P          PP +   L  
Sbjct: 134 AETESPEPGDEGEPGRSGLELEPEEPPGWRELVPPDTLHSLPK 176

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 26/152 (17%), Positives = 34/152 (22%), Gaps = 12/152 (7%)

Query: 113 RSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPP 172
           R    P+ T    S     +      P   +             E     P +   +   
Sbjct: 17  RRSDEPAKTKKGLSSILDAARWNRGEPQVPDFR-------HLKAEVDAEKPGATDRKGGV 69

Query: 173 PPPSSSPPKNSPP--APIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPN---SPPPPST 227
             PS      +P    P           P + P   A       S   P    S  PP +
Sbjct: 70  GMPSRDRNIGAPGQDTPGVSLHPLSLDSPDREPGADAPLELGDSSPQGPMSLESLAPPES 129

Query: 228 KRLSPPPGIPVPSTENTPGNGTNPSSPESSSS 259
                    P P  E  PG       PE    
Sbjct: 130 TDEGAETESPEPGDEGEPGRSGLELEPEEPPG 161

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 57.2 bits (139), Expect = 3e-09
 Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 6/83 (7%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQL---KIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
            LG+GGF   ++          A K +    +       +   E+ I   + H+H+V   
Sbjct: 22  FLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFH 81

Query: 430 GYCISDDRRL-LIYDYVPNNTLY 451
           G+   D+  + ++ +     +L 
Sbjct: 82  GF-FEDNDFVFVVLELCRRRSLL 103

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 13/77 (16%), Positives = 33/77 (42%), Gaps = 4/77 (5%)

Query: 373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGE--REFKAEVEIISRI--HHRHLVSL 428
             +G GG   V++      +  AIK + +     +    ++ E+  ++++  H   ++ L
Sbjct: 15  KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRL 74

Query: 429 VGYCISDDRRLLIYDYV 445
             Y I+D    ++ +  
Sbjct: 75  YDYEITDQYIYMVMECG 91

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 21/137 (15%), Positives = 48/137 (35%), Gaps = 7/137 (5%)

Query: 313 GSSSTTDSSYIKTQSSAPLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKA-TDGFAD 371
           GS S+  +  + + +     GS          +D  G+  +  +   +   +        
Sbjct: 3   GSVSSGQAHSLASLAKTWSSGSAKLQRLGPETEDNEGVLLTEKLKPVDYEYREEVHWMTH 62

Query: 372 QNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVG 430
           Q  +G G FG V++      G + A+K++++     E     E+   + +    +V L G
Sbjct: 63  QPRVGRGSFGEVHRMKDKQTGFQCAVKKVRL-----EVFRVEELVACAGLSSPRIVPLYG 117

Query: 431 YCISDDRRLLIYDYVPN 447
                    +  + +  
Sbjct: 118 AVREGPWVNIFMELLEG 134

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 56.5 bits (137), Expect = 4e-09
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 9/88 (10%)

Query: 369 FADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVS 427
           F +  L+G GGFG V+K     DG+   IK++K        + + EV+ ++++ H ++V 
Sbjct: 13  FKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKY----NNEKAEREVKALAKLDHVNIVH 68

Query: 428 LVGYCISDD----RRLLIYDYVPNNTLY 451
             G     D                 L+
Sbjct: 69  YNGCWDGFDYDPETSSKNSSRSKTKCLF 96

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 57.4 bits (139), Expect = 4e-09
 Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 13/116 (11%)

Query: 335 GPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGY-LPDGRE 393
           GPGS   +    PG       MF        +D +  Q +LG+G FG V        G+E
Sbjct: 1   GPGSMMDHLHATPG-------MFVQHSTAIFSDRYKGQRVLGKGSFGEVILCKDKITGQE 53

Query: 394 VAIKQL---KIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL-LIYDYV 445
            A+K +   ++     +     EV+++ ++ H +++ L  +   D     L+ +  
Sbjct: 54  CAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFF-EDKGYFYLVGEVY 108

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 56.6 bits (137), Expect = 5e-09
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 359 YEELVKATD---GFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEV 414
           YE + +  D    +     LG+G FG VYK      G   A K ++    +   ++  E+
Sbjct: 8   YEHVRRDLDPNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEI 67

Query: 415 EIISRIHHRHLVSLVG 430
           EI++   H ++V L+G
Sbjct: 68  EILATCDHPYIVKLLG 83

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 56.3 bits (136), Expect = 6e-09
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 6/89 (6%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQL-KIGGGQGEREFKAEVEIISRIHHRHLVSLVGY 431
           +LG+G   +V++G     G   AIK    I   +       E E++ +++H+++V L   
Sbjct: 16  ILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFA- 74

Query: 432 CISDDRRLLIY---DYVPNNTLYFHLHGK 457
              +          ++ P  +LY  L   
Sbjct: 75  IEEETTTRHKVLIMEFCPCGSLYTVLEEP 103

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 56.3 bits (136), Expect = 8e-09
 Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 3/103 (2%)

Query: 355 SMFTYEELVKATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGG-GQGEREF-K 411
            + T     ++ + +     +GEG FG         DGR+  IK++ I      ERE  +
Sbjct: 12  DLGTENLYFQSMEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESR 71

Query: 412 AEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHL 454
            EV +++ + H ++V        +    ++ DY     L+  +
Sbjct: 72  REVAVLANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRI 114

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 56.3 bits (136), Expect = 8e-09
 Identities = 21/104 (20%), Positives = 44/104 (42%), Gaps = 20/104 (19%)

Query: 375 LGEGGFGSVYKGYLPDGREVAIKQL-----------------KIGGGQGEREFKAEVEII 417
           L +G F  +      D +  A+K+                  KI       +FK E++II
Sbjct: 39  LNQGKFNKIILCE-KDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQII 97

Query: 418 SRIHHRHLVSLVGYCISDDRRL-LIYDYVPNNTLYFHLHGKWQL 460
           + I + + ++  G  I++   + +IY+Y+ N+++       + L
Sbjct: 98  TDIKNEYCLTCEGI-ITNYDEVYIIYEYMENDSILKFDEYFFVL 140

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 56.6 bits (137), Expect = 8e-09
 Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 5/108 (4%)

Query: 342 NSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQL- 399
            +    G L  +  MF   +    ++ +     LG G +G V          E AIK + 
Sbjct: 12  ENLYFQGDLQATPGMFITSKKGHLSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIR 71

Query: 400 --KIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV 445
              +      +    EV ++  + H +++ L  +        L+ +  
Sbjct: 72  KTSVSTSSNSK-LLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVMECY 118

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 56.8 bits (137), Expect = 8e-09
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGY 431
           +  LG+G FG V+ G       VAIK LK  G      F  E +++ ++ H  LV L   
Sbjct: 272 EVKLGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQLYAV 330

Query: 432 CISDDRRLLIYDYVPN 447
             S++   ++ +Y+  
Sbjct: 331 V-SEEPIYIVTEYMSK 345

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 11  ANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPA 70
           +N S P        ++ P   V      + P        T S P S      P+++  PA
Sbjct: 2   SNKSKPKDASQRRRSLEPAENVHGAGGGAFPASQ-----TPSKPASADGHRGPSAAFAPA 56

Query: 71  SSPPTSSPPPASNPPTSSPPPSPPASSPPTI 101
           ++ P       S+   +SP  + P +   T 
Sbjct: 57  AAEPKLFGGFNSSDTVTSPQRAGPLAGGVTT 87

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 14/80 (17%), Positives = 22/80 (27%)

Query: 56  SPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSP 115
            P  ++    S  PA +   +         T S P S      P+ +  P  + P     
Sbjct: 6   KPKDASQRRRSLEPAENVHGAGGGAFPASQTPSKPASADGHRGPSAAFAPAAAEPKLFGG 65

Query: 116 PPPSSTPPPNSPPSPPSDPP 135
              S T        P +   
Sbjct: 66  FNSSDTVTSPQRAGPLAGGV 85

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 14/89 (15%), Positives = 24/89 (26%), Gaps = 6/89 (6%)

Query: 37  KSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPAS 96
           KS P         +       PA N   +      +  T S P +++          PA+
Sbjct: 4   KSKPKD------ASQRRRSLEPAENVHGAGGGAFPASQTPSKPASADGHRGPSAAFAPAA 57

Query: 97  SPPTISPPPPVSNPPTRSPPPPSSTPPPN 125
           + P +      S+  T             
Sbjct: 58  AEPKLFGGFNSSDTVTSPQRAGPLAGGVT 86

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 13/83 (15%), Positives = 20/83 (24%), Gaps = 1/83 (1%)

Query: 96  SSPPTISPPPPVSNPPTRSPPPPSSTPPPNSP-PSPPSDPPANSPPPSNPPSNLPPPPPS 154
            S P  +     S  P  +         P S  PS P+    +  P +        P   
Sbjct: 4   KSKPKDASQRRRSLEPAENVHGAGGGAFPASQTPSKPASADGHRGPSAAFAPAAAEPKLF 63

Query: 155 SVEPPKRSPPSVPPQNPPPPPSS 177
                  +  S     P     +
Sbjct: 64  GGFNSSDTVTSPQRAGPLAGGVT 86

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 44.9 bits (106), Expect = 5e-05
 Identities = 17/88 (19%), Positives = 25/88 (28%), Gaps = 7/88 (7%)

Query: 27  SPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPT 86
           S P   S   +S  P   V      + P S   S P ++            P  A  P  
Sbjct: 5   SKPKDASQRRRSLEPAENVHGAGGGAFPASQTPSKPASADGHR-------GPSAAFAPAA 57

Query: 87  SSPPPSPPASSPPTISPPPPVSNPPTRS 114
           + P      +S  T++ P          
Sbjct: 58  AEPKLFGGFNSSDTVTSPQRAGPLAGGV 85

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 17/82 (20%), Positives = 22/82 (26%), Gaps = 3/82 (3%)

Query: 64  TSSSPPASSPPTSSPPPASNPPTSS---PPPSPPASSPPTISPPPPVSNPPTRSPPPPSS 120
             S P  +S    S  PA N   +     P S   S P +       S     +   P  
Sbjct: 3   NKSKPKDASQRRRSLEPAENVHGAGGGAFPASQTPSKPASADGHRGPSAAFAPAAAEPKL 62

Query: 121 TPPPNSPPSPPSDPPANSPPPS 142
               NS  +  S   A      
Sbjct: 63  FGGFNSSDTVTSPQRAGPLAGG 84

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 17/87 (19%), Positives = 23/87 (26%), Gaps = 4/87 (4%)

Query: 125 NSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSP 184
            S P   S    +  P  N         P+S  P K   P+    +  P  + +P    P
Sbjct: 4   KSKPKDASQRRRSLEPAENVHGAGGGAFPASQTPSK---PASADGHRGPSAAFAPAAAEP 60

Query: 185 PAPIAVPPS-NVPPPPTQTPPTPASPI 210
                   S  V  P    P       
Sbjct: 61  KLFGGFNSSDTVTSPQRAGPLAGGVTT 87

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 55.8 bits (135), Expect = 9e-09
 Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGE--REFKAEVEIISRI--HHRHLVSL 428
             +G GG   V++      +  AIK + +     +    ++ E+  ++++  H   ++ L
Sbjct: 34  KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRL 93

Query: 429 VGYCISDDR 437
             Y I+D  
Sbjct: 94  YDYEITDQY 102

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 56.6 bits (136), Expect = 1e-08
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 8/91 (8%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGERE-FKAEVEIISRIHHRHLVSLV--- 429
           LG GGFG V +      G +VAIKQ +       RE +  E++I+ +++H ++VS     
Sbjct: 22  LGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVP 81

Query: 430 ---GYCISDDRRLLIYDYVPNNTLYFHLHGK 457
                   +D  LL  +Y     L  +L+  
Sbjct: 82  DGLQKLAPNDLPLLAMEYCEGGDLRKYLNQF 112

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 5/83 (6%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQLKIGG-GQGEREF-KAEVEIISRIHHRHLVSLVG 430
            +G G +G   K     DG+ +  K+L  G   + E++   +EV ++  + H ++V    
Sbjct: 13  TIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYD 72

Query: 431 -YCISDDRRLLIY-DYVPNNTLY 451
                 +  L I  +Y     L 
Sbjct: 73  RIIDRTNTTLYIVMEYCEGGDLA 95

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 54.9 bits (132), Expect = 2e-08
 Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 12/86 (13%)

Query: 353 SRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGERE-F 410
           SR +  +E +            +G GGFG V++     D    AIK++++   +  RE  
Sbjct: 2   SRYLTDFEPI----------QCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKV 51

Query: 411 KAEVEIISRIHHRHLVSLVGYCISDD 436
             EV+ ++++ H  +V      +   
Sbjct: 52  MREVKALAKLEHPGIVRYFNAWLETP 77

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 28/127 (22%), Positives = 57/127 (44%), Gaps = 13/127 (10%)

Query: 332 IGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDG 391
           + + P +    +P D             +   +    + +  ++G G FG V++  L + 
Sbjct: 5   MSNAPLNGVKLNPLDDPNKVIKVLASDGKTGEQREIAYTNCKVIGNGSFGVVFQAKLVES 64

Query: 392 REVAIKQLKIGGGQGEREFKA-EVEIISRIHHRHLVSLVGYCISDDRRL------LIYDY 444
            EVAIK++       ++ FK  E++I+  + H ++V L  +  S+  +       L+ +Y
Sbjct: 65  DEVAIKKVLQ-----DKRFKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEY 119

Query: 445 VPNNTLY 451
           VP  T+Y
Sbjct: 120 VP-ETVY 125

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 7/76 (9%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQL---KIGGGQGEREFKAEVEIISRIHHRHLVSLVG 430
           LG+G FG V K       +E A+K +                EVE++ ++ H +++ L  
Sbjct: 30  LGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTST-ILREVELLKKLDHPNIMKLFE 88

Query: 431 YCISDDRRL-LIYDYV 445
               D     ++ +  
Sbjct: 89  IL-EDSSSFYIVGELY 103

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 2/138 (1%)

Query: 309 PSPLGSSSTTDSSYIKTQSSAPLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDG 368
                + +    S        P+      +  V+ P  P    H         +      
Sbjct: 32  SRSGHNEAKEVWSNADLTERMPVKSKRTSALAVDIPAPPAPFDHRIVTAKQGAVNSFYT- 90

Query: 369 FADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVS 427
            +   +LG G FG V+K      G ++A K +K  G + + E K E+ +++++ H +L+ 
Sbjct: 91  VSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQ 150

Query: 428 LVGYCISDDRRLLIYDYV 445
           L     S +  +L+ +YV
Sbjct: 151 LYDAFESKNDIVLVMEYV 168

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 54.1 bits (131), Expect = 3e-08
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYC 432
           +LG G F  V+       G+  A+K +K      +   + E+ ++ +I H ++V+L    
Sbjct: 16  VLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIY 75

Query: 433 ISDDRRLLIYDYVP 446
            S     L+   V 
Sbjct: 76  ESTTHYYLVMQLVS 89

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 4/82 (4%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQL---KIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
            LG+GGF   ++          A K +    +       +   E+ I   + H+H+V   
Sbjct: 48  FLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFH 107

Query: 430 GYCISDDRRLLIYDYVPNNTLY 451
           G+   +D   ++ +     +L 
Sbjct: 108 GFFEDNDFVFVVLELCRRRSLL 129

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 18/118 (15%), Positives = 38/118 (32%), Gaps = 14/118 (11%)

Query: 342 NSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLK 400
                  G+  +  M+  ++  K  + +     LG G +G V          E AIK +K
Sbjct: 11  RENLYFQGIAINPGMYVRKKEGKIGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIK 70

Query: 401 -------------IGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV 445
                            +   E   E+ ++  + H +++ L           L+ ++ 
Sbjct: 71  KSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDVFEDKKYFYLVTEFY 128

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 6/86 (6%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQL-KIGGGQGEREFKAEVEIISRIHHRHLVSLVGY 431
           +LG+G   +V++G     G   AIK    I   +       E E++ +++H+++V L   
Sbjct: 16  ILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFA- 74

Query: 432 CISDDRRLLIY---DYVPNNTLYFHL 454
              +          ++ P  +LY  L
Sbjct: 75  IEEETTTRHKVLIMEFCPCGSLYTVL 100

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 54.7 bits (130), Expect = 4e-08
 Identities = 29/177 (16%), Positives = 42/177 (23%)

Query: 36  PKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPA 95
            +  P PP ++ P      PSP        +S  + S   + PP A     + PP     
Sbjct: 11  ARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRL 70

Query: 96  SSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSS 155
                    P     P     P        S P+    P   S    +  S L      +
Sbjct: 71  RLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRA 130

Query: 156 VEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAP 212
            E   R               +   +  P  P                P     + P
Sbjct: 131 RELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLVLP 187

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 54.4 bits (129), Expect = 5e-08
 Identities = 30/176 (17%), Positives = 48/176 (27%), Gaps = 3/176 (1%)

Query: 49  PTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVS 108
               P P   A       +P  + P   +P  A    + S   + P ++P      PP  
Sbjct: 11  ARRRPGPPRIAPPKLACRTPSPARPALRAPASA---TSGSRKRARPPAAPGRDQARPPAR 67

Query: 109 NPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPP 168
                S    SS   P +P  P    P      S P +  PP   S+ +    S  +   
Sbjct: 68  RRLRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCL 127

Query: 169 QNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPP 224
           Q      +      +         +       + P    +P   R    +    P 
Sbjct: 128 QRARELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPG 183

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 54.4 bits (129), Expect = 5e-08
 Identities = 29/174 (16%), Positives = 45/174 (25%), Gaps = 4/174 (2%)

Query: 28  PPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS----NPPTSSSPPASSPPTSSPPPASN 83
           P PP   PPK +   P  ++P   +P  +   S     PP +     + PP       S 
Sbjct: 15  PGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSV 74

Query: 84  PPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSN 143
              SSP        P   SP   +      +  PP  T   +                  
Sbjct: 75  DEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELG 134

Query: 144 PPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPP 197
                                   P+ P    + +  +    A   +P   +P 
Sbjct: 135 ARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLVLPY 188

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 53.2 bits (126), Expect = 1e-07
 Identities = 24/173 (13%), Positives = 37/173 (21%)

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
                 PP  +PP  +    S    +   P+   S     + PP         PP     
Sbjct: 11  ARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRL 70

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPK 181
                  S PS P A   P    P         +   P     +          S     
Sbjct: 71  RLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRA 130

Query: 182 NSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPP 234
               A +    ++         P             +P      +  +   P 
Sbjct: 131 RELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPG 183

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 52.8 bits (125), Expect = 1e-07
 Identities = 21/179 (11%), Positives = 37/179 (20%)

Query: 38  SSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASS 97
           +   P P    P      +P  + P   +   A+S       P + P      P      
Sbjct: 11  ARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRL 70

Query: 98  PPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVE 157
             ++      S P     P   S        +P +  P +     +  +           
Sbjct: 71  RLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRA 130

Query: 158 PPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSN 216
               +       +      S  P+                        P  P    P  
Sbjct: 131 RELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLVLPYK 189

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 52.8 bits (125), Expect = 1e-07
 Identities = 23/174 (13%), Positives = 35/174 (20%)

Query: 36  PKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPA 95
           P      PP     T SP      +    +S     + P ++P      P +        
Sbjct: 15  PGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSV 74

Query: 96  SSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSS 155
               + S P     P   SP        P +   P      +    S   S L       
Sbjct: 75  DEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELG 134

Query: 156 VEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASP 209
                    +        P +   P+                     P      
Sbjct: 135 ARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLVLPY 188

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 52.4 bits (124), Expect = 2e-07
 Identities = 28/180 (15%), Positives = 42/180 (23%), Gaps = 3/180 (1%)

Query: 14  SSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSP 73
             P PP   PP ++   P    P       P S    +     PPA+     + PPA   
Sbjct: 13  RRPGPPRIAPPKLACRTP---SPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRR 69

Query: 74  PTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSD 133
              S    S+P T   P  P   SP         +                +   S    
Sbjct: 70  LRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQR 129

Query: 134 PPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPS 193
                       ++      S     +  P     +  P               + +P  
Sbjct: 130 ARELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLVLPYK 189

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 50.9 bits (120), Expect = 6e-07
 Identities = 24/169 (14%), Positives = 40/169 (23%), Gaps = 7/169 (4%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPT-------TSPPP 55
             +P   A  + SP  P    P  +           + P    ++PP             
Sbjct: 19  RIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSVDEVS 78

Query: 56  SPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSP 115
           SP     P   + P+         PA+  P          +     S          R  
Sbjct: 79  SPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELGARVR 138

Query: 116 PPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPP 164
              +S        +P ++     P     P+       +    P    P
Sbjct: 139 ALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLVLP 187

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 50.9 bits (120), Expect = 6e-07
 Identities = 18/179 (10%), Positives = 33/179 (18%)

Query: 84  PPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSN 143
                 PP          +P P        +     S      P +P  D          
Sbjct: 11  ARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRL 70

Query: 144 PPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTP 203
             S      PS+ E P       P Q       ++       +       +      Q  
Sbjct: 71  RLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRA 130

Query: 204 PTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESSSSPSN 262
               + +    +++              P       +      +            P  
Sbjct: 131 RELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLVLPYK 189

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 49.3 bits (116), Expect = 2e-06
 Identities = 22/171 (12%), Positives = 31/171 (18%), Gaps = 2/171 (1%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
             P    P   +   P P         P   ++  +    PP         PP       
Sbjct: 15  PGPPRIAPPKLACRTPSPARPAL--RAPASATSGSRKRARPPAAPGRDQARPPARRRLRL 72

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
                S P++      P   S               P   S     +     S    +  
Sbjct: 73  SVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARE 132

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPP 172
                     S   A              P        +R      P  P 
Sbjct: 133 LGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPG 183

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 42.8 bits (99), Expect = 2e-04
 Identities = 17/151 (11%), Positives = 27/151 (17%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
            AP+     +   + PP         PP              P +      P    P   
Sbjct: 38  RAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSVDEVSSPSTPEAPDIPACPSPGQK 97

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
              S+      P  +S          +            +      +     S  P +  
Sbjct: 98  IKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELGARVRALKASAQDAGESCTPEAEG 157

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPP 152
            P                        L  P 
Sbjct: 158 RPEEPCGEKAPAYQRFHALAQPGLPGLVLPY 188

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 6/88 (6%)

Query: 369 FADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIG--GGQGEREFKAEVEIISRI-HHRH 424
           F +   +G G FGSV+K     DG   AIK+ K    G   E+    EV   + +  H H
Sbjct: 13  FHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSH 72

Query: 425 LVSLVGYCISDDRRLLIY-DYVPNNTLY 451
           +V       ++D  +LI  +Y    +L 
Sbjct: 73  VVRYFS-AWAEDDHMLIQNEYCNGGSLA 99

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 13/63 (20%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 369 FADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVS 427
           +     +G+G  G+VY    +  G+EVAI+Q+ +     +     E+ ++    + ++V+
Sbjct: 22  YTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVN 81

Query: 428 LVG 430
            + 
Sbjct: 82  YLD 84

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 53.6 bits (129), Expect = 6e-08
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCI 433
           LG G FG V++      GR    K +       +   K E+ I++++HH  L++L     
Sbjct: 59  LGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFE 118

Query: 434 SDDRRLLIYDYV 445
                +LI +++
Sbjct: 119 DKYEMVLILEFL 130

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 53.2 bits (128), Expect = 7e-08
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGY 431
           +L EGGF  VY+   +  GRE A+K+L     +  R    EV  + ++  H ++V     
Sbjct: 35  VLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSA 94

Query: 432 CISDDRRL 439
                   
Sbjct: 95  ASIGKEES 102

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 53.3 bits (128), Expect = 8e-08
 Identities = 12/69 (17%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGE--REFKAEVEIISRIHH--RHLVSL 428
             +G GG   V++      +  AIK + +     +    ++ E+  ++++      ++ L
Sbjct: 62  KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRL 121

Query: 429 VGYCISDDR 437
             Y I+D  
Sbjct: 122 YDYEITDQY 130

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 369 FADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGERE-FKAEVEIISRIHHRHLV 426
           F     +G+G FG V+KG      + VAIK + +   + E E  + E+ ++S+    ++ 
Sbjct: 24  FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVT 83

Query: 427 SLVG 430
              G
Sbjct: 84  KYYG 87

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 27/139 (19%), Positives = 44/139 (31%), Gaps = 16/139 (11%)

Query: 308 MPSPLGSSSTTDSSYIKTQSSAPLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATD 367
               LG+ +    S  + Q               +   DP     S    +++ L     
Sbjct: 9   SGVDLGTENLYFQSMHQLQPRRVSFRGEASETLQSPGYDPSR-PESFFQQSFQRL----- 62

Query: 368 GFADQNLLGEGGFGSVYKG-YLPDGREVAIKQLKIG--GGQGEREFKAEVEIISRI-HHR 423
                + LG G +G V+K     DGR  A+K+      G +      AEV    ++  H 
Sbjct: 63  -----SRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHP 117

Query: 424 HLVSLVGYCISDDRRLLIY 442
             V L      +   L + 
Sbjct: 118 CCVRLEQ-AWEEGGILYLQ 135

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 21/99 (21%), Positives = 33/99 (33%)

Query: 33  SNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPS 92
            +  ++       ++ P      + P+++        A          A  P   +PPP 
Sbjct: 339 FDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQ 398

Query: 93  PPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPP 131
                       PP   PP   PPPP   PP  +PP+ P
Sbjct: 399 GYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAP 437

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 25/106 (23%), Positives = 38/106 (35%), Gaps = 6/106 (5%)

Query: 65  SSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPP 124
                      +     +   + + P +  A     ++    +       PP   + PP 
Sbjct: 339 FDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQ 398

Query: 125 NSPP-SPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQ 169
             PP   P   P   PP   PP   PPPP  +  PP+ +PP+ PPQ
Sbjct: 399 GYPPQGYP---PQGYPPQGYPPQGYPPPPQGA--PPQGAPPAAPPQ 439

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 23/107 (21%), Positives = 31/107 (28%), Gaps = 3/107 (2%)

Query: 91  PSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPP 150
           P                 +  T  P   SS   P++  +   +  A         +    
Sbjct: 331 PWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQA---A 387

Query: 151 PPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPP 197
            PP    PP +  P         PP   PP+  PP P   PP   PP
Sbjct: 388 YPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPP 434

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 48.0 bits (114), Expect = 4e-06
 Identities = 17/99 (17%), Positives = 25/99 (25%)

Query: 1   MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS 60
               +     A +  P    S+    +    +                        PP  
Sbjct: 340 DDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQG 399

Query: 61  NPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPP 99
            PP    P    P    P     PP  +PP   P ++PP
Sbjct: 400 YPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPP 438

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 46.8 bits (111), Expect = 9e-06
 Identities = 27/120 (22%), Positives = 34/120 (28%), Gaps = 12/120 (10%)

Query: 4   PSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPP 63
           P                 +  T  P    S+   S+                   A+ PP
Sbjct: 331 PWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPP 390

Query: 64  TSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPP 123
              +PP    P    PP   PP   PP            PPPP   PP  +PP   + PP
Sbjct: 391 QGYAPPPQGYPPQGYPPQGYPPQGYPPQG---------YPPPPQGAPPQGAPP---AAPP 438

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 25/107 (23%), Positives = 33/107 (30%), Gaps = 5/107 (4%)

Query: 7   GPPAANSSSPPPPVSNPPTI--SPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPT 64
                 +       +  P    S   P ++  +       + K         P    PP 
Sbjct: 338 QFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPP 397

Query: 65  SSSPPASSPPTSSPPPASNPPTSSPPPS--PPASSPPTISPPPPVSN 109
              PP   PP   PP    P    PPP   PP  +PP  +PP  V N
Sbjct: 398 QGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPA-APPQGVDN 443

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 19/103 (18%), Positives = 23/103 (22%)

Query: 134 PPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPS 193
                           P   SS   P      +                 PP   A PP 
Sbjct: 339 FDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQ 398

Query: 194 NVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGI 236
             PP        P     P+     P   PP      +PP G+
Sbjct: 399 GYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQGV 441

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 20/101 (19%), Positives = 29/101 (28%), Gaps = 1/101 (0%)

Query: 124 PNSPPSPPSDPPANSPPPSNPPSNLPPP-PPSSVEPPKRSPPSVPPQNPPPPPSSSPPKN 182
                    D  A +  P+   S+  P    + ++        +  Q    PP    P  
Sbjct: 338 QFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPP 397

Query: 183 SPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPP 223
               P   PP   PP        P  P    P  + P +PP
Sbjct: 398 QGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPP 438

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 4/103 (3%)

Query: 113 RSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPP 172
                  +    ++    P+   +++ P ++          + ++  ++   + PPQ   
Sbjct: 337 CQFDDKETEDDKDAETEIPAGESSDAAPSADAAQM--KEMMAMMQKMQQQQAAYPPQGYA 394

Query: 173 PPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPS 215
           PPP   PP+  PP     PP   PP     PP  A P    P+
Sbjct: 395 PPPQGYPPQGYPPQG--YPPQGYPPQGYPPPPQGAPPQGAPPA 435

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 40.7 bits (95), Expect = 8e-04
 Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPP--PPPVSKPPTTSPPPSPPA 59
           +  +         +    +       PP   + PP+  PP   PP   PP   PP   P 
Sbjct: 363 APSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYP- 421

Query: 60  SNPPTSSSPPASSPPTSSPPPASN 83
             PP   +PP  +PP + P    N
Sbjct: 422 --PPPQGAPPQGAPPAAPPQGVDN 443

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 52.2 bits (124), Expect = 2e-07
 Identities = 21/121 (17%), Positives = 28/121 (23%), Gaps = 3/121 (2%)

Query: 119 SSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSS 178
            S    N P    +D     PPP  P +  P   P S               P   P++ 
Sbjct: 11  DSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERAS---TAAPVASPAAP 67

Query: 179 PPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPV 238
            P +S         SN     T       S      S  +           +   P    
Sbjct: 68  SPGSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDW 127

Query: 239 P 239
            
Sbjct: 128 A 128

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 51.4 bits (122), Expect = 4e-07
 Identities = 17/115 (14%), Positives = 32/115 (27%)

Query: 23  PPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPAS 82
           P           PP   P        P ++   +  AS     +SP A SP +S      
Sbjct: 19  PNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFF 78

Query: 83  NPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPAN 137
           +  +++   +  A++          S    R           + P +  +     
Sbjct: 79  SSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWAKYFKG 133

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 49.8 bits (118), Expect = 1e-06
 Identities = 13/105 (12%), Positives = 23/105 (21%)

Query: 70  ASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPS 129
           + S   ++ P         P P PP  S  +    P  +          +    P +P  
Sbjct: 10  SDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSP 69

Query: 130 PPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPP 174
             S         SN          ++             +     
Sbjct: 70  GSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAA 114

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 47.9 bits (113), Expect = 4e-06
 Identities = 18/117 (15%), Positives = 35/117 (29%)

Query: 82  SNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPP 141
           SN   + P         P   PPPP +  P  +P   +++    S  +P + P A SP  
Sbjct: 12  SNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGS 71

Query: 142 SNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPP 198
           S           +  +    +  +   Q       +     +    + +   +    
Sbjct: 72  SGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWA 128

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 47.9 bits (113), Expect = 5e-06
 Identities = 12/100 (12%), Positives = 23/100 (23%)

Query: 2   SAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASN 61
           + P+          PPPP  +  +    P  +               P    P S     
Sbjct: 17  NLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGG 76

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTI 101
             +S S        ++    S         +    +   +
Sbjct: 77  FFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARV 116

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 47.5 bits (112), Expect = 6e-06
 Identities = 15/103 (14%), Positives = 26/103 (25%)

Query: 12  NSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPAS 71
           N  +  P         P PP   P  +SP   P S   +     +      P + SP +S
Sbjct: 13  NFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSS 72

Query: 72  SPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRS 114
                    ++    ++   +   S                  
Sbjct: 73  GGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAAR 115

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 47.1 bits (111), Expect = 7e-06
 Identities = 14/124 (11%), Positives = 24/124 (19%)

Query: 71  SSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSP 130
           S     +  P         P  PP           P S   +      ++     + PSP
Sbjct: 10  SDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSP 69

Query: 131 PSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAV 190
            S          +          ++    +    S                + P    A 
Sbjct: 70  GSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWAK 129

Query: 191 PPSN 194
               
Sbjct: 130 YFKG 133

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 47.1 bits (111), Expect = 7e-06
 Identities = 14/116 (12%), Positives = 26/116 (22%), Gaps = 3/116 (2%)

Query: 60  SNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPS 119
           +N P         P    PPP++  P ++P  +  ++              P    P  S
Sbjct: 16  ANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERA---STAAPVASPAAPSPGSS 72

Query: 120 STPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPP 175
                 S  S        +   +           +           V  +      
Sbjct: 73  GGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWA 128

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 47.1 bits (111), Expect = 7e-06
 Identities = 17/102 (16%), Positives = 29/102 (28%), Gaps = 3/102 (2%)

Query: 33  SNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPS 92
           +N P          +PP   P  + P     T  S  AS+   S+  P ++P   SP  S
Sbjct: 16  ANLPNGYMTDLQRPQPPPPPPSAASP---GATPGSAAASAERASTAAPVASPAAPSPGSS 72

Query: 93  PPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDP 134
                  ++S     +     +                 +  
Sbjct: 73  GGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAA 114

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 46.8 bits (110), Expect = 9e-06
 Identities = 20/113 (17%), Positives = 30/113 (26%), Gaps = 2/113 (1%)

Query: 48  PPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPV 107
           P         P   PP  S+    + P S+   A    T++P  SP A SP +       
Sbjct: 19  PNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFF 78

Query: 108 SNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPK 160
           S+         ++     S         A           L        +  K
Sbjct: 79  SSLSNAVKQTTAAAAATFSEQVGGGSGGA--GRGGAAARVLLVIDEPHTDWAK 129

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 46.8 bits (110), Expect = 9e-06
 Identities = 16/104 (15%), Positives = 27/104 (25%), Gaps = 3/104 (2%)

Query: 1   MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS 60
             A  P     +   P PP   PP  S   P + P  ++      S     + P +P   
Sbjct: 14  FMANLPNGYMTDLQRPQPP---PPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPG 70

Query: 61  NPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPP 104
           +        + S        A+    S         +    +  
Sbjct: 71  SSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAA 114

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 13/102 (12%), Positives = 25/102 (24%)

Query: 13  SSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASS 72
            ++ P           PPP      S    P  +         + P ++P   S   +  
Sbjct: 15  MANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGG 74

Query: 73  PPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRS 114
               S    +   T++   +  +      S          R 
Sbjct: 75  GGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARV 116

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 14/97 (14%), Positives = 28/97 (28%)

Query: 5   SPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPT 64
                      PPPP S     + P   +   + +    PV+ P   SP  S       +
Sbjct: 21  GYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSS 80

Query: 65  SSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTI 101
            S+    +   ++   +      S       ++   +
Sbjct: 81  LSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVL 117

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 14/114 (12%), Positives = 31/114 (27%)

Query: 86  TSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPP 145
            ++ P            PPPP S     + P  ++     +  + P   PA   P S+  
Sbjct: 15  MANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGG 74

Query: 146 SNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPP 199
                   ++V+    +  +   +        +    +    + V         
Sbjct: 75  GGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWA 128

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 11/97 (11%), Positives = 21/97 (21%)

Query: 104 PPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSP 163
           P        R  PPP      +   +P S   +     +  P   P  P           
Sbjct: 19  PNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFF 78

Query: 164 PSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPT 200
            S+         +++   +      +           
Sbjct: 79  SSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAAR 115

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 15/119 (12%), Positives = 34/119 (28%)

Query: 64  TSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPP 123
            ++ P         P P   PP+++ P + P S+  +       +   + + P P S+  
Sbjct: 15  MANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGG 74

Query: 124 PNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKN 182
                S  +     +   +   S               +   +   + P    +   K 
Sbjct: 75  GGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWAKYFKG 133

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 45.2 bits (106), Expect = 3e-05
 Identities = 15/106 (14%), Positives = 25/106 (23%)

Query: 21  SNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPP 80
           S+   ++  P         P PPP      +       A+     +S  A     ++P P
Sbjct: 10  SDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSP 69

Query: 81  ASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNS 126
            S+           A    T +     S                  
Sbjct: 70  GSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAAR 115

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 44.8 bits (105), Expect = 4e-05
 Identities = 12/102 (11%), Positives = 23/102 (22%), Gaps = 2/102 (1%)

Query: 49  PTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVS 108
               P         P    PP S+    + P ++         + P +SP   +P P  S
Sbjct: 15  MANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPA--APSPGSS 72

Query: 109 NPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPP 150
                     ++     +  +                     
Sbjct: 73  GGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAA 114

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 21/116 (18%), Positives = 35/116 (30%), Gaps = 15/116 (12%)

Query: 142 SNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQ 201
           SN  +NLP    + ++ P+  PP     +P   P S+                       
Sbjct: 12  SNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAA---------------SAERAS 56

Query: 202 TPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESS 257
           T    ASP AP P +S         +  +         +     G G+  +    +
Sbjct: 57  TAAPVASPAAPSPGSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGA 112

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 41.8 bits (97), Expect = 4e-04
 Identities = 12/106 (11%), Positives = 22/106 (20%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
                 P      P          S          ++P   P +  P +S      +S  
Sbjct: 23  MTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSSLS 82

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVS 108
                  A++  T S         +    +          P    +
Sbjct: 83  NAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWA 128

>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Length = 566

 Score = 52.4 bits (124), Expect = 2e-07
 Identities = 24/236 (10%), Positives = 42/236 (17%), Gaps = 15/236 (6%)

Query: 21  SNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSS------------- 67
           S    +    P S            +   +T   P    SN                   
Sbjct: 87  SPRLILFFKDPSSKDELGKSAETASADVVSTWVCPICMVSNETQGEFTKDTLPTPICINC 146

Query: 68  --PPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPN 125
             P       SS   ++    ++ P +    +   I P    +N P            PN
Sbjct: 147 GVPADYELTKSSINCSNAIDPNANPQNQFGVNSENICPACTFANHPQIGNCEICGHRLPN 206

Query: 126 SPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPP 185
           +          N                 +         S    +       S  K+   
Sbjct: 207 ASKVRSKLNRLNFHDSRVHIELEKNSLARNKSSHSALSSSSSTGSSTEFVQLSFRKSDGV 266

Query: 186 APIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPST 241
                    +    T+      +      +                 P      S 
Sbjct: 267 LFSQATERALENILTEKNKHIFNQNVVSVNGVDMRKGASSHEYNNEVPFIETKLSR 322

>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Length = 566

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 25/240 (10%), Positives = 47/240 (19%), Gaps = 22/240 (9%)

Query: 64  TSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPP--SST 121
                    P +      S    S+   S        +S            P P   +  
Sbjct: 88  PRLILFFKDPSSKDELGKSAETASADVVSTWVCPICMVSNETQGEFTKDTLPTPICINCG 147

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSS-------VEPPKRSPPSVPPQNPPPP 174
            P +   +  S   +N+  P+  P N       +          P+     +     P  
Sbjct: 148 VPADYELTKSSINCSNAIDPNANPQNQFGVNSENICPACTFANHPQIGNCEICGHRLPNA 207

Query: 175 PSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPP 234
                  N      +     +         +  S ++   S  S       S ++     
Sbjct: 208 SKVRSKLNRLNFHDSRVHIELEKNSLARNKSSHSALSSSSSTGSSTEFVQLSFRKSDGVL 267

Query: 235 GIPV-------------PSTENTPGNGTNPSSPESSSSPSNNGIGTAGTVVIAVAVGIIA 281
                                N      N       +S                 +GI +
Sbjct: 268 FSQATERALENILTEKNKHIFNQNVVSVNGVDMRKGASSHEYNNEVPFIETKLSRIGISS 327

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 4/66 (6%)

Query: 369 FADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFK---AEVEIISRIHHRH 424
           F+D   +G G FG+VY    + +   VAIK++   G Q   +++    EV  + ++ H +
Sbjct: 56  FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 115

Query: 425 LVSLVG 430
            +   G
Sbjct: 116 TIQYRG 121

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCI 433
           LG G FG V++       +    K +K+ G   +   K E+ I++   HR+++ L     
Sbjct: 13  LGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFE 71

Query: 434 SDDRRLLIYDYV 445
           S +  ++I++++
Sbjct: 72  SMEELVMIFEFI 83

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} Length = 483

 Score = 51.2 bits (122), Expect = 4e-07
 Identities = 27/187 (14%), Positives = 51/187 (27%), Gaps = 13/187 (6%)

Query: 78  PPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPAN 137
                +   S+PP +    + P+   PP + N          ++   +        P A+
Sbjct: 293 LKYQQSQIASAPPRAVGHGAGPSGLAPPALQNDRQSGVDEGRTSGWSSMDRRRAPPPIAS 352

Query: 138 SPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPP 197
               +   + +      S EP      +          S  P  +S         S    
Sbjct: 353 VGTLAKQKAPVGNDASFSKEP---VISASNFLGRSSGSSRRPAVSS---------SRDVM 400

Query: 198 PPTQTPPTPASPIAPRPSNSSPNSPPPPSTKRLSPPPGIPVPSTENTPGNGTNPSSPESS 257
           P   + P+        P      S P  S+   S  P     S  ++       S+ +  
Sbjct: 401 PIDTSEPSRTRATDASPGAFRRTSGPQKSSPVNSAEPK-HSSSARHSSNVKNYESALKGI 459

Query: 258 SSPSNNG 264
              + +G
Sbjct: 460 EGLNFDG 466

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 367 DGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGERE-FKAEVEIISRIHHRH 424
           D +  Q ++G G    V   Y  P   +VAIK++ +   Q   +    E++ +S+ HH +
Sbjct: 15  DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPN 74

Query: 425 LVSLVG 430
           +VS   
Sbjct: 75  IVSYYT 80

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 51.4 bits (123), Expect = 5e-07
 Identities = 23/144 (15%), Positives = 46/144 (31%), Gaps = 7/144 (4%)

Query: 309 PSPLGSSSTTDSSYIKTQSSAPLIGSGPGSDFVNSPQDPGGLGHS--RSMFTYEELVKAT 366
           P    +         K +    +   G       +               +  + +    
Sbjct: 93  PCEPTAPVLIPGDERKRRRGYDVDEQGKIVRGKGTVSSNYDNYVFDIWKQYYPQPVEIKH 152

Query: 367 DGFADQ----NLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIH 421
           D   D       LG G FG V++      G   A K +       +   + E++ +S + 
Sbjct: 153 DHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLR 212

Query: 422 HRHLVSLVGYCISDDRRLLIYDYV 445
           H  LV+L      D+  ++IY+++
Sbjct: 213 HPTLVNLHDAFEDDNEMVMIYEFM 236

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 50.1 bits (120), Expect = 6e-07
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 6/97 (6%)

Query: 352 HSRSMFTYEELVKATDG---FADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGE 407
             R +   +E          F     LGEG +GSVYK      G+ VAIKQ+ +      
Sbjct: 11  PRRQLKKLDEDSLTKQPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPV--ESDL 68

Query: 408 REFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY 444
           +E   E+ I+ +    H+V   G    +    ++ +Y
Sbjct: 69  QEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEY 105

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 50.2 bits (120), Expect = 6e-07
 Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 6/77 (7%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIK-----QLKIGGGQGEREFKAEVEIISRIHHRHLVSL 428
           +G+G +G V            AIK     +++    +     K EV ++ ++HH ++  L
Sbjct: 34  IGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARL 93

Query: 429 VGYCISDDRRLLIYDYV 445
                 +    L+ +  
Sbjct: 94  YEVYEDEQYICLVMELC 110

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 50.1 bits (120), Expect = 6e-07
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)

Query: 369 FADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLV 426
           F    L+G G +G VYKG  +  G+  AIK + +  G  E E K E+ ++ +  HHR++ 
Sbjct: 26  FELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDV-TGDEEEEIKQEINMLKKYSHHRNIA 84

Query: 427 SLVG 430
           +  G
Sbjct: 85  TYYG 88

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 33/226 (14%), Positives = 62/226 (27%), Gaps = 79/226 (34%)

Query: 287 LVVWCLRRRKKEV------SGLNGVY------IMPSPLGSSSTTDSSYIKTQSSAPLIGS 334
            + W L  +++E+        L   Y      I       S  T   YI+ +    L   
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM-YIEQRD--RLYND 122

Query: 335 GP--GSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLL---GEGGFGSVYKGYLP 389
                   V+  Q             Y +L +A         +   G  G G   K ++ 
Sbjct: 123 NQVFAKYNVSRLQ------------PYLKLRQALLELRPAKNVLIDGVLGSG---KTWV- 166

Query: 390 DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNT 449
                A+             +K + ++  +I     ++ +  C S +  L +        
Sbjct: 167 -----ALDVC--------LSYKVQCKMDFKIF---WLN-LKNCNSPETVLEML-----QK 204

Query: 450 LYFHLHGKWQLGFDI---------------------RNHNNGLLIL 474
           L + +   W    D                      + + N LL+L
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQL---KIGGGQGEREFKAEVEIISRIHHRHLVSLVG 430
           LG+G FG V K       +E A+K +                EVE++ ++ H +++ L  
Sbjct: 30  LGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTST-ILREVELLKKLDHPNIMKLFE 88

Query: 431 YCISDDRRLLIYDYV 445
                    ++ +  
Sbjct: 89  ILEDSSSFYIVGELY 103

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 7/78 (8%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIK-----QLKIGGGQGERE-FKAEVEIISRIHHRHLVS 427
           LG G F  V K      G + A K     + K       RE  + EV I+  I H ++++
Sbjct: 19  LGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVIT 78

Query: 428 LVGYCISDDRRLLIYDYV 445
           L     +    +LI + V
Sbjct: 79  LHEVYENKTDVILILELV 96

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 16/137 (11%)

Query: 336 PGSDFVNSPQDPGGLGHSRSM-FTYEELVKAT-DGFADQNLLGEGGFGSVYKGYLPDGRE 393
           P  +F++S          R + + + E      D F D  +LG GGFG V+   +    +
Sbjct: 158 PFQEFLDSLY------FLRFLQWKWLEAQPMGEDWFLDFRVLGRGGFGEVFACQMKATGK 211

Query: 394 V-AIKQLK---IGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL-LIYDYVPNN 448
           + A K+L    +   +G +    E +I++++H R +VSL  Y       L L+   +   
Sbjct: 212 LYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLA-YAFETKTDLCLVMTIMNGG 270

Query: 449 TLYFHLH--GKWQLGFD 463
            + +H++   +   GF 
Sbjct: 271 DIRYHIYNVDEDNPGFQ 287

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 7/78 (8%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIK-----QLKIGGGQGERE-FKAEVEIISRIHHRHLVS 427
           LG G F  V K      G E A K     Q +       RE  + EV I+ ++ H ++++
Sbjct: 20  LGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVIT 79

Query: 428 LVGYCISDDRRLLIYDYV 445
           L     +    +LI + V
Sbjct: 80  LHDVYENRTDVVLILELV 97

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 16/100 (16%)

Query: 353 SRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGERE-- 409
                 YE+L            LGEG F +VYK       + VAIK++K+G     ++  
Sbjct: 6   KSRAKRYEKLDF----------LGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGI 55

Query: 410 -FKA--EVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP 446
              A  E++++  + H +++ L+          L++D++ 
Sbjct: 56  NRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFME 95

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGY 431
            +LG G  G+V       GR VA+K++ I           E+++++    H +++    Y
Sbjct: 21  KILGYGSSGTVVFQGSFQGRPVAVKRMLI---DFCDIALMEIKLLTESDDHPNVIRY--Y 75

Query: 432 CISDDRR 438
           C     R
Sbjct: 76  CSETTDR 82

>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_V Length = 1275

 Score = 49.1 bits (116), Expect = 3e-06
 Identities = 21/174 (12%), Positives = 36/174 (20%)

Query: 31  PVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPP 90
           P     KSS      ++             N     +             A     S   
Sbjct: 5   PRKTKGKSSGKGNDSTERSDDGSSQLRDKQNNKAGPATTEPGTSNREQYRARPGIASVQR 64

Query: 91  PSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPP 150
            +  A  P   +                +            +   A     S        
Sbjct: 65  ATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKDEADEATQKQAKDTDKSKAQVTYSD 124

Query: 151 PPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPP 204
              ++     RS            P S+    +  A ++  P+ V  PPT +  
Sbjct: 125 TGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSG 178

>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_V Length = 1275

 Score = 44.8 bits (105), Expect = 5e-05
 Identities = 20/180 (11%), Positives = 41/180 (22%), Gaps = 6/180 (3%)

Query: 52  SPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPP 111
            P  +   S+   + S   S   +S      N         P  S+       P +++  
Sbjct: 4   IPRKTKGKSSGKGNDSTERSDDGSSQLRDKQNNKAGPATTEPGTSNREQYRARPGIASVQ 63

Query: 112 TRSPP--PPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQ 169
             +     P       +P    +         S              +   +S   V   
Sbjct: 64  RATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKDEADEATQKQAKDTDKSKAQVTYS 123

Query: 170 NPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNSSPNSPPPPSTKR 229
           +     ++   ++                P  T    A+        +    PP  S+  
Sbjct: 124 DTGINNANELSRSGNVD----NEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGH 179

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 8/87 (9%)

Query: 374 LLGEGGFGSVYKG-YLPDGREVAIKQLK----IGGGQGEREFKAEVEIISRIHHRHLVSL 428
           +LGEG F +V     L   RE AIK L+    I   +       E +++SR+ H   V L
Sbjct: 37  ILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPY-VTRERDVMSRLDHPFFVKL 95

Query: 429 VGYCISDDRRL-LIYDYVPNNTLYFHL 454
             +   DD +L     Y  N  L  ++
Sbjct: 96  Y-FTFQDDEKLYFGLSYAKNGELLKYI 121

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 7/78 (8%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIK-----QLKIGGGQGERE-FKAEVEIISRIHHRHLVS 427
           LG G F  V K      G E A K     Q +       RE  + EV I+ ++ H ++++
Sbjct: 20  LGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIIT 79

Query: 428 LVGYCISDDRRLLIYDYV 445
           L     +    +LI + V
Sbjct: 80  LHDVYENRTDVVLILELV 97

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 6/95 (6%)

Query: 374 LLGEGGFGSVYKGYLPDGREV-AIKQLK---IGGGQGEREFKAEVEIISRIHHRHLVSLV 429
           +LG+GGFG V    +    ++ A K+L+   I   +GE     E +I+ +++ R +VSL 
Sbjct: 191 VLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLA 250

Query: 430 GYCISDDRRL-LIYDYVPNNTLYFHLHGKWQLGFD 463
            Y       L L+   +    L FH++   Q GF 
Sbjct: 251 -YAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFP 284

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 7/78 (8%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIK-----QLKIGGGQGERE-FKAEVEIISRIHHRHLVS 427
           LG G F  V K      G+E A K     +L        RE  + EV I+  I H ++++
Sbjct: 13  LGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIIT 72

Query: 428 LVGYCISDDRRLLIYDYV 445
           L     +    +LI + V
Sbjct: 73  LHDIFENKTDVVLILELV 90

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 12/112 (10%)

Query: 342 NSPQDPGGLGHSRSMFTYEELVKATDGFADQ----NLLGEGGFGSVYKGY-LPDGREVAI 396
           +     GG    R     E ++ A+  F+D       LG+G F  V +      G E A 
Sbjct: 3   HMASMTGGQQMGRGS---EFMMNASTKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAA 59

Query: 397 KQL---KIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV 445
           K +   K+     ++  + E  I  ++ H ++V L      +    L++D V
Sbjct: 60  KIINTKKLSARDFQK-LEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLV 110

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 6/77 (7%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIK-----QLKIGGGQGEREFKAEVEIISRIHHRHLVSL 428
           +G+G F  V +      G++ A+K     +     G    + K E  I   + H H+V L
Sbjct: 32  IGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVEL 91

Query: 429 VGYCISDDRRLLIYDYV 445
           +    SD    ++++++
Sbjct: 92  LETYSSDGMLYMVFEFM 108

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQL--KIGGGQGEREFKAEVEIISRIHHRHLVSLVGY 431
           LG+G F  V +   +  G+E A   +  K    +  ++ + E  I   + H ++V L   
Sbjct: 19  LGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDS 78

Query: 432 CISDDRRLLIYDYV 445
              +    LI+D V
Sbjct: 79  ISEEGHHYLIFDLV 92

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 47.2 bits (111), Expect = 6e-06
 Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 10/81 (12%)

Query: 352 HSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGG-------- 403
             +    +   +  T+       +GEG FG V++    D   VAIK + I G        
Sbjct: 6   SQKGPVPFSHCL-PTEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSH 63

Query: 404 GQGEREFKAEVEIISRIHHRH 424
            +   E   E+ I   +    
Sbjct: 64  QKTFEEILPEIIISKELSLLS 84

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 11/91 (12%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQL---KIGGGQGEREFKAEVEIISRIHHRHLVSLVG 430
           +G+G F  V     +  GREVAIK +   ++     ++ F+ EV I+  ++H ++V L  
Sbjct: 23  IGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFR-EVRIMKILNHPNIVKL-- 79

Query: 431 Y-CISDDRRL-LIYDYVPNNTLYFHL--HGK 457
           +  I  ++ L LI +Y     ++ +L  HG+
Sbjct: 80  FEVIETEKTLYLIMEYASGGEVFDYLVAHGR 110

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 46.8 bits (112), Expect = 8e-06
 Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 18/109 (16%)

Query: 342 NSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKI 401
           +       L     M  Y++L K          +GEG +G VYK     GR VA+K++++
Sbjct: 6   HHSSGRENLYFQGLMEKYQKLEK----------VGEGTYGVVYKAKDSQGRIVALKRIRL 55

Query: 402 GGGQGERE---FKA--EVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV 445
                E E     A  E+ ++  +HH ++VSL+    S+    L+++++
Sbjct: 56  D---AEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFEFM 101

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 19/119 (15%)

Query: 333 GSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGY-LPDG 391
           G+                  + S+  Y  + K          LGEG +G VYK       
Sbjct: 10  GTLEAQTQGPGSMSVSAAPSATSIDRYRRITK----------LGEGTYGEVYKAIDTVTN 59

Query: 392 REVAIKQLKIGGGQGERE---FKA--EVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV 445
             VAIK++++     E E     A  EV ++  + HR+++ L      + R  LI++Y 
Sbjct: 60  ETVAIKRIRLE---HEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHLIFEYA 115

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGERE-FKAEVEIISRIHHRHLVSLVGYC 432
           LG G FG V+       G E  IK +     Q   E  +AE+E++  + H +++ +    
Sbjct: 30  LGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVF 89

Query: 433 ISDDRRLLIYDYV 445
                  ++ +  
Sbjct: 90  EDYHNMYIVMETC 102

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 12/82 (14%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQL---KIGGGQGERE-----FKAEVEIISRIHHRHL 425
           LG G  G V   +     ++VAI+ +   K   G           + E+EI+ +++H  +
Sbjct: 143 LGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCI 202

Query: 426 VSLVGYCISDDRRL-LIYDYVP 446
           + +  +   D     ++ + + 
Sbjct: 203 IKIKNFF--DAEDYYIVLELME 222

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGY 431
           +LGEG    V     L   +E A+K ++   G        EVE++ +   HR+++ L+ +
Sbjct: 20  VLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEF 79

Query: 432 CISDDRRLLIYDYV 445
              +DR  L+++ +
Sbjct: 80  FEEEDRFYLVFEKM 93

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQL---KIGGGQGEREFKAEVEIISRIHHRHLVSLVG 430
           LG+G F  V +      G E A K +   K+     ++  + E  I  ++ H ++V L  
Sbjct: 14  LGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQK-LEREARICRKLQHPNIVRLHD 72

Query: 431 YCISDDRRLLIYDYV 445
               +    L++D V
Sbjct: 73  SIQEESFHYLVFDLV 87

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCI 433
           +G G +G V            A K++     +    FK E+EI+  + H +++ L     
Sbjct: 17  IGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFE 76

Query: 434 SDDRRLLIYDYV 445
            +    L+ +  
Sbjct: 77  DNTDIYLVMELC 88

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 19/102 (18%)

Query: 353 SRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGERE-F 410
            +SM  YE L            +GEG +G V K      GR VAIK+        + +  
Sbjct: 21  FQSMEKYENLGL----------VGEGSYGMVMKCRNKDTGRIVAIKKFLES---DDDKMV 67

Query: 411 KA----EVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNN 448
           K     E++++ ++ H +LV+L+  C    R  L++++V + 
Sbjct: 68  KKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFEFVDHT 109

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 10/81 (12%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQL---KIGGGQGERE-----FKAEVEIISRIHHRHL 425
           LG G  G V   +     ++VAIK +   K   G           + E+EI+ +++H  +
Sbjct: 18  LGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCI 77

Query: 426 VSLVGYCISDDRRLLIYDYVP 446
           + +  +    +   ++ + + 
Sbjct: 78  IKIKNF-FDAEDYYIVLELME 97

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 46.0 bits (107), Expect = 2e-05
 Identities = 19/110 (17%), Positives = 31/110 (28%), Gaps = 8/110 (7%)

Query: 81  ASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPP 140
            S P       +  A++   +S  P V          P+     N      + P      
Sbjct: 391 MSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPK----- 445

Query: 141 PSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAV 190
                   P PP     P K +  +  P  P P   +   + +PP  +  
Sbjct: 446 ---VTKEKPTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRLEH 492

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 45.7 bits (106), Expect = 2e-05
 Identities = 14/114 (12%), Positives = 29/114 (25%)

Query: 54  PPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTR 113
             +P +     +      +   +    ++                 T    P +      
Sbjct: 377 SDAPNSWYGAGAIKMSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNG 436

Query: 114 SPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVP 167
                +        P+PP  P A + P       L P P +     + +PP+  
Sbjct: 437 KIRAVNVPKVTKEKPTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRL 490

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 44.5 bits (103), Expect = 6e-05
 Identities = 19/88 (21%), Positives = 27/88 (30%)

Query: 114 SPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPP 173
           +    +  P  + P  P  D      P      N      +  +  K  P        P 
Sbjct: 402 ATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTAPT 461

Query: 174 PPSSSPPKNSPPAPIAVPPSNVPPPPTQ 201
            P+    K   PAP+A      P PPT+
Sbjct: 462 KPTYETEKPLKPAPVAPNYEKEPTPPTR 489

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 42.2 bits (97), Expect = 3e-04
 Identities = 15/96 (15%), Positives = 20/96 (20%), Gaps = 4/96 (4%)

Query: 120 STPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSP 179
           +T   N  P                  N+       +       P V  + P PP   + 
Sbjct: 402 ATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVN--VPKVTKEKPTPPVKPTA 459

Query: 180 PKNSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPS 215
           P    P      P    P        P  P      
Sbjct: 460 PT--KPTYETEKPLKPAPVAPNYEKEPTPPTRLEHH 493

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 41.4 bits (95), Expect = 5e-04
 Identities = 13/86 (15%), Positives = 22/86 (25%)

Query: 38  SSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASS 97
           ++     +        P          +     +    +   P       +PP  P A +
Sbjct: 402 ATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTAPT 461

Query: 98  PPTISPPPPVSNPPTRSPPPPSSTPP 123
            PT     P+   P         TPP
Sbjct: 462 KPTYETEKPLKPAPVAPNYEKEPTPP 487

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 4/75 (5%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQLKI--GGGQGEREFKAEVEIISRI-HHRHLVSLVG 430
           LG G F  V +      G+E A K LK    G     E   E+ ++        +++L  
Sbjct: 37  LGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHE 96

Query: 431 YCISDDRRLLIYDYV 445
              +    +LI +Y 
Sbjct: 97  VYENTSEIILILEYA 111

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 8/84 (9%)

Query: 367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGERE---FKA--EVEIISRIH 421
           + +     +GEG +G VYK     G   A+K++++     E E        E+ I+  + 
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLE---KEDEGIPSTTIREISILKELK 58

Query: 422 HRHLVSLVGYCISDDRRLLIYDYV 445
           H ++V L     +  R +L+++++
Sbjct: 59  HSNIVKLYDVIHTKKRLVLVFEHL 82

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQLK----IGGGQGEREFKAEVEIISRIHHRHLVSL 428
           LLGEG +G V +          A+K LK         GE   K E++++ R+ H++++ L
Sbjct: 12  LLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQL 71

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 369 FADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVS 427
           F  +++LG G  G++    + D R+VA+K++     +       EV+++     H +++ 
Sbjct: 26  FCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILP---ECFSFADREVQLLRESDEHPNVIR 82

Query: 428 LVGYCISDDRR 438
              +C   DR+
Sbjct: 83  Y--FCTEKDRQ 91

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 13/102 (12%), Positives = 37/102 (36%), Gaps = 8/102 (7%)

Query: 351 GHSRSMFTYEELVKATDG---FADQNLLGEG--GFGSVYKGY-LPDGREVAIKQLKIGGG 404
            H      ++ +         +    ++G+G     +V      P G  V ++++ +   
Sbjct: 6   HHHMENLYFQGMSSFLPEGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEAC 65

Query: 405 QGER--EFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY 444
             E     + E+ +    +H ++V      I+D+   ++  +
Sbjct: 66  SNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSF 107

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 7/124 (5%)

Query: 327 SSAPLIGSGPGSDFVNSPQDPGGLGHSRSMFTYEELVKATDGFADQ----NLLGEGGFGS 382
           S   L         ++S       G +  +  Y       D  +D     + LG G    
Sbjct: 9   SGVDLGTENLYFQSMSSVTASAAPGTASLVPDYWIDGSNRDALSDFFEVESELGRGATSI 68

Query: 383 VYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI 441
           VY+       +  A+K LK      ++  + E+ ++ R+ H +++ L     +     L+
Sbjct: 69  VYRCKQKGTQKPYALKVLKKT--VDKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLV 126

Query: 442 YDYV 445
            + V
Sbjct: 127 LELV 130

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 9/63 (14%)

Query: 375 LGEGGFGSVYKG-YLPDGREVAIKQL---KIGGGQGEREFKA-----EVEIISRIHHRHL 425
           LG G FG V+        +EV +K +   K+       + K      E+ I+SR+ H ++
Sbjct: 32  LGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANI 91

Query: 426 VSL 428
           + +
Sbjct: 92  IKV 94

>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} Length = 467

 Score = 44.7 bits (105), Expect = 4e-05
 Identities = 15/144 (10%), Positives = 32/144 (22%), Gaps = 3/144 (2%)

Query: 87  SSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPS 146
           S   P     +          S   + S   PS  PP                 P     
Sbjct: 12  SGLVPRGSHMASKRCRQCSGDSASSSTSSLSPSELPPSKKAAGGQRVTAEVEVAPI-TTD 70

Query: 147 NLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTP 206
                  ++    K++    P +        +          A   + +    ++     
Sbjct: 71  ATSATVTAAGGAKKKATTGSPARRTSSAAKITNGDAGELIRTAEALAALNAKKSEKEIW- 129

Query: 207 ASPIAPRPSNSSPNSPPPPSTKRL 230
            S + P    ++ +   P    + 
Sbjct: 130 -SDVVPFVRRTTDSDFDPSRMYKF 152

>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} Length = 467

 Score = 44.3 bits (104), Expect = 7e-05
 Identities = 16/135 (11%), Positives = 35/135 (25%), Gaps = 8/135 (5%)

Query: 3   APSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNP 62
           A       +  S+     S  P+  PP   +   +       V+   T +   +  A+  
Sbjct: 22  ASKRCRQCSGDSASSSTSSLSPSELPPSKKAAGGQRVTAEVEVAPITTDATSATVTAAGG 81

Query: 63  PTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTP 122
               +        ++  PA    +++   +  A      +      N         S   
Sbjct: 82  AKKKA--------TTGSPARRTSSAAKITNGDAGELIRTAEALAALNAKKSEKEIWSDVV 133

Query: 123 PPNSPPSPPSDPPAN 137
           P     +     P+ 
Sbjct: 134 PFVRRTTDSDFDPSR 148

>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} Length = 467

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 14/140 (10%), Positives = 29/140 (20%), Gaps = 6/140 (4%)

Query: 43  PPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTIS 102
            P      +         +  +S+S      P+  PP                +   T +
Sbjct: 15  VPRGSHMASKRCRQCSGDSASSSTSS---LSPSELPPSKKAAGGQRVTAEVEVAPITTDA 71

Query: 103 PPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRS 162
               V+          + +P   +  +                        ++ +  K  
Sbjct: 72  TSATVTAAGGAKKKATTGSPARRTSSAAKITNGDAGELIRTAE---ALAALNAKKSEKEI 128

Query: 163 PPSVPPQNPPPPPSSSPPKN 182
              V P       S   P  
Sbjct: 129 WSDVVPFVRRTTDSDFDPSR 148

>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} Length = 467

 Score = 40.8 bits (95), Expect = 8e-04
 Identities = 14/134 (10%), Positives = 31/134 (23%), Gaps = 3/134 (2%)

Query: 30  PPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPT---SSPPPASNPPT 86
            P  +   S           ++S     P+  PP+  +            +P        
Sbjct: 15  VPRGSHMASKRCRQCSGDSASSSTSSLSPSELPPSKKAAGGQRVTAEVEVAPITTDATSA 74

Query: 87  SSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPS 146
           +            T SP    S+    +              +  +   +     S+   
Sbjct: 75  TVTAAGGAKKKATTGSPARRTSSAAKITNGDAGELIRTAEALAALNAKKSEKEIWSDVVP 134

Query: 147 NLPPPPPSSVEPPK 160
            +     S  +P +
Sbjct: 135 FVRRTTDSDFDPSR 148

>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} Length = 467

 Score = 40.8 bits (95), Expect = 9e-04
 Identities = 15/133 (11%), Positives = 27/133 (20%), Gaps = 2/133 (1%)

Query: 35  PPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPA--SNPPTSSPPPS 92
            P+ S       +  +     S  +S  P+   P   +             P T+    +
Sbjct: 15  VPRGSHMASKRCRQCSGDSASSSTSSLSPSELPPSKKAAGGQRVTAEVEVAPITTDATSA 74

Query: 93  PPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPP 152
              ++          S     S     +               A +   S         P
Sbjct: 75  TVTAAGGAKKKATTGSPARRTSSAAKITNGDAGELIRTAEALAALNAKKSEKEIWSDVVP 134

Query: 153 PSSVEPPKRSPPS 165
                      PS
Sbjct: 135 FVRRTTDSDFDPS 147

>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Length = 538

 Score = 44.6 bits (105), Expect = 5e-05
 Identities = 13/74 (17%), Positives = 21/74 (28%), Gaps = 2/74 (2%)

Query: 109 NPPTRSPPPPSSTPPPNSPPSP-PSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVP 167
           +PP++     +         +P    P  +              P    E P R    VP
Sbjct: 10  DPPSQDLKDGTQEEATKRQEAPVDPRPEGDPQRTVISWRGAVIEPEQGTELPSRRAE-VP 68

Query: 168 PQNPPPPPSSSPPK 181
            + P PP  +    
Sbjct: 69  TKPPLPPARTQGTP 82

>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Length = 538

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 13/72 (18%), Positives = 20/72 (27%)

Query: 29  PPPVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSS 88
            PP  +    +       +     P P         S       P   +  P+      +
Sbjct: 10  DPPSQDLKDGTQEEATKRQEAPVDPRPEGDPQRTVISWRGAVIEPEQGTELPSRRAEVPT 69

Query: 89  PPPSPPASSPPT 100
            PP PPA +  T
Sbjct: 70  KPPLPPARTQGT 81

>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Length = 538

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 14/76 (18%), Positives = 22/76 (28%), Gaps = 1/76 (1%)

Query: 73  PPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPS 132
           PP+      +    +    +P     P   P   V +       P   T  P+     P+
Sbjct: 11  PPSQDLKDGTQEEATKRQEAPVDP-RPEGDPQRTVISWRGAVIEPEQGTELPSRRAEVPT 69

Query: 133 DPPANSPPPSNPPSNL 148
            PP         P +L
Sbjct: 70  KPPLPPARTQGTPVHL 85

>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Length = 538

 Score = 40.8 bits (95), Expect = 9e-04
 Identities = 15/82 (18%), Positives = 22/82 (26%), Gaps = 8/82 (9%)

Query: 127 PPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSPPA 186
           PPS                + + P P    +    S      +               P+
Sbjct: 11  PPSQDLKDGTQEEATKRQEAPVDPRPEGDPQRTVISWRGAVIEPEQGTE--------LPS 62

Query: 187 PIAVPPSNVPPPPTQTPPTPAS 208
             A  P+  P PP +T  TP  
Sbjct: 63  RRAEVPTKPPLPPARTQGTPVH 84

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 44.1 bits (105), Expect = 5e-05
 Identities = 20/85 (23%), Positives = 45/85 (52%), Gaps = 9/85 (10%)

Query: 367 DGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGERE---FKA--EVEIISRI 420
           + F     +GEG +G VYK      G  VA+K++++     E E     A  E+ ++  +
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLD---TETEGVPSTAIREISLLKEL 59

Query: 421 HHRHLVSLVGYCISDDRRLLIYDYV 445
           +H ++V L+    ++++  L+++++
Sbjct: 60  NHPNIVKLLDVIHTENKLYLVFEFL 84

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 43.9 bits (103), Expect = 7e-05
 Identities = 6/63 (9%), Positives = 12/63 (19%), Gaps = 4/63 (6%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQL---KIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
            L  G    V+    +    + A+K                       +R+         
Sbjct: 69  PLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEAR 128

Query: 430 GYC 432
              
Sbjct: 129 DRR 131

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 14/91 (15%)

Query: 369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKA-EVEIISRIHHRHLV 426
           + D  ++G G FG VY+  L   G  VAIK++       ++ FK  E++I+ ++ H ++V
Sbjct: 56  YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQ-----DKRFKNRELQIMRKLDHCNIV 110

Query: 427 SLVGYCISDDRRL------LIYDYVPNNTLY 451
            L  +  S   +       L+ DYVP  T+Y
Sbjct: 111 RLRYFFYSSGEKKDEVYLNLVLDYVP-ETVY 140

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 43.3 bits (103), Expect = 7e-05
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQL---KIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
            LG G FG V  G     G +VA+K L   KI       + K E++ +    H H++ L 
Sbjct: 18  TLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKL- 76

Query: 430 GY-CISDDRRL-LIYDYVPNNTLYFHL--HGK 457
            Y  IS      ++ +YV    L+ ++  HG+
Sbjct: 77  -YQVISTPTDFFMVMEYVSGGELFDYICKHGR 107

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 43.6 bits (103), Expect = 9e-05
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 14/90 (15%)

Query: 374 LLGEGGFGSVY----KGYLPDGREVAIKQLK----IGGGQGEREFKAEVEIISRIHHRHL 425
           ++G G FG V     K      +  A+K L     +   +    F+ E +++     + +
Sbjct: 81  VIGRGAFGEVAVVKLKN---ADKVFAMKILNKWEMLKRAETAC-FREERDVLVNGDSKWI 136

Query: 426 VSLVGYCISDDRRL-LIYDYVPNNTLYFHL 454
            +L  Y   DD  L L+ DY     L   L
Sbjct: 137 TTLH-YAFQDDNNLYLVMDYYVGGDLLTLL 165

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 14/92 (15%), Positives = 33/92 (35%), Gaps = 10/92 (10%)

Query: 360 EELVKATDGFADQ----NLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEV 414
           ++L + +  F D       +G G +    +        E A+K +             E+
Sbjct: 11  QQLHRNSIQFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDPTE----EI 66

Query: 415 EIISR-IHHRHLVSLVGYCISDDRRLLIYDYV 445
           EI+ R   H ++++L           ++ + +
Sbjct: 67  EILLRYGQHPNIITLKDVYDDGKYVYVVTELM 98

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 14/90 (15%)

Query: 374 LLGEGGFGSVY----KGYLPDGREVAIKQLK----IGGGQGEREFKAEVEIISRIHHRHL 425
            LG G FG V+    +    +GR  A+K LK    +   Q E     E  ++S + H  +
Sbjct: 13  TLGTGSFGRVHLIRSRH---NGRYYAMKVLKKEIVVRLKQVEHT-NDERLMLSIVTHPFI 68

Query: 426 VSLVGYCISDDRRL-LIYDYVPNNTLYFHL 454
           + +      D +++ +I DY+    L+  L
Sbjct: 69  IRMW-GTFQDAQQIFMIMDYIEGGELFSLL 97

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 10/92 (10%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQL---KIGGGQGEREFKAEVEIISRIHHRHLVSLV 429
            LG G FG V  G     G +VA+K L   KI       + + E++ +    H H++ L 
Sbjct: 23  TLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKL- 81

Query: 430 GY-CISDDRRL-LIYDYVPNNTLYFHL--HGK 457
            Y  IS    + ++ +YV    L+ ++  +G+
Sbjct: 82  -YQVISTPSDIFMVMEYVSGGELFDYICKNGR 112

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQL---KIGGGQGEREFKAEVEIISRIHHRHLVSL 428
            LGEG FG V         ++VA+K +    +         + E+  +  + H H++ L
Sbjct: 16  TLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKL 74

>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens} Length = 411

 Score = 43.2 bits (100), Expect = 1e-04
 Identities = 31/164 (18%), Positives = 50/164 (30%)

Query: 1   MSAPSPGPPAANSSSPPPPVSNPPTISPPPPVSNPPKSSPPPPPVSKPPTTSPPPSPPAS 60
           +     G      +   P +++    S PP  S+   S      V+   TTS   + PA 
Sbjct: 176 IGPAGLGGLGGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAP 235

Query: 61  NPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSS 120
           + P ++S  + SP  SS   AS   + + P           +   P      +     S 
Sbjct: 236 SAPAAASATSPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASV 295

Query: 121 TPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPP 164
             P    P   +        P  P     P     ++    SP 
Sbjct: 296 LTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQ 339

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 18/85 (21%), Positives = 41/85 (48%), Gaps = 9/85 (10%)

Query: 367 DGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGERE---FKA--EVEIISRI 420
             +     +GEG +G+V+K         VA+K++++     + E     A  E+ ++  +
Sbjct: 2   QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLD---DDDEGVPSSALREICLLKEL 58

Query: 421 HHRHLVSLVGYCISDDRRLLIYDYV 445
            H+++V L     SD +  L++++ 
Sbjct: 59  KHKNIVRLHDVLHSDKKLTLVFEFC 83

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 16/75 (21%)

Query: 374 LLGEGGFGSVYKGY--LPDGREVAIKQLKIGGGQGERE-FKAEVEIISRIHHRHLVSLVG 430
            +  GG G +Y       +GR V +K L   G    +    AE + ++ + H  +V    
Sbjct: 87  CIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQ--- 143

Query: 431 YCISDDRRLLIYDYV 445
                     I+++V
Sbjct: 144 ----------IFNFV 148

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 17/162 (10%), Positives = 28/162 (17%), Gaps = 19/162 (11%)

Query: 75  TSSPPPASNPPTSSPPPSPPASSPPTISP-------PPPVSNPPT-----------RSPP 116
              P          P   P   +  +          P P     T               
Sbjct: 271 LDLPTRNGRYVDGLPEDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLREV 330

Query: 117 PPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPPS 176
               T  P    S    P  ++       ++        V   K +   +      P   
Sbjct: 331 VAQDTGVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEIVTALSVPLVD 390

Query: 177 SSPPK-NSPPAPIAVPPSNVPPPPTQTPPTPASPIAPRPSNS 217
            +    +   A +   P                      S S
Sbjct: 391 PTDVAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSES 432

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 9/106 (8%), Positives = 20/106 (18%), Gaps = 2/106 (1%)

Query: 31  PVSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPP 90
            V       P P   +    +            T           +    A+   T+   
Sbjct: 329 EVVAQDTGVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDG--QVHAEKLTANEIVTALSV 386

Query: 91  PSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPA 136
           P    +          V + P ++     +               +
Sbjct: 387 PLVDPTDVAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSES 432

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 41.4 bits (97), Expect = 7e-04
 Identities = 9/105 (8%), Positives = 15/105 (14%), Gaps = 3/105 (2%)

Query: 62  PPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSST 121
              +  P        SP  ++         +                             
Sbjct: 332 AQDTGVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQ---VHAEKLTANEIVTALSVPL 388

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSV 166
             P    +        S P     S       +          SV
Sbjct: 389 VDPTDVAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSESV 433

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 14/90 (15%)

Query: 374 LLGEGGFGSVY----KGYLPDGREVAIKQLK----IGGGQGEREFKAEVEIISRIHHRHL 425
           ++G G F  V     K     G+  A+K +     +  G+    F+ E +++     R +
Sbjct: 68  VIGRGAFSEVAVVKMKQ---TGQVYAMKIMNKWDMLKRGEVSC-FREERDVLVNGDRRWI 123

Query: 426 VSLVGYCISDDRRL-LIYDYVPNNTLYFHL 454
             L  +   D+  L L+ +Y     L   L
Sbjct: 124 TQLH-FAFQDENYLYLVMEYYVGGDLLTLL 152

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 14/97 (14%)

Query: 367 DGFADQNLLGEGGFGSVY----KGYLPDGREVAIKQLK----IGGGQGEREFKAEVEIIS 418
           D F     LG G FG V     K     G   A+K L     +   Q E     E  I+ 
Sbjct: 41  DQFDRIKTLGTGSFGRVMLVKHKE---SGNHYAMKILDKQKVVKLKQIEH-TLNEKRILQ 96

Query: 419 RIHHRHLVSLVGYCISDDRRL-LIYDYVPNNTLYFHL 454
            ++   LV L  +   D+  L ++ +YV    ++ HL
Sbjct: 97  AVNFPFLVKLE-FSFKDNSNLYMVMEYVAGGEMFSHL 132

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 14/90 (15%)

Query: 374 LLGEGGFGSVY----KGYLPDGREVAIKQLK----IGGGQGEREFKAEVEIISRIHHRHL 425
           ++G G FG V     K      +  A+K L     I        F  E +I++  +   +
Sbjct: 76  VIGRGAFGEVQLVRHKS---TRKVYAMKLLSKFEMIKRSDSAF-FWEERDIMAFANSPWV 131

Query: 426 VSLVGYCISDDRRL-LIYDYVPNNTLYFHL 454
           V L  Y   DDR L ++ +Y+P   L   +
Sbjct: 132 VQLF-YAFQDDRYLYMVMEYMPGGDLVNLM 160

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 7/58 (12%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQL------KIGGGQGEREFKAEVEIISRIHHRH 424
           LLG GGFGSVY G  + D   VAIK +        G          EV ++ ++    
Sbjct: 50  LLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGF 107

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 19/98 (19%)

Query: 346 DPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGG 404
           D         +  YE+L K          +G+G FG V+K      G++VA+K++ +   
Sbjct: 6   DSVECPFCDEVSKYEKLAK----------IGQGTFGEVFKARHRKTGQKVALKKVLM--- 52

Query: 405 QGERE---FKA--EVEIISRIHHRHLVSLVGYCISDDR 437
           + E+E     A  E++I+  + H ++V+L+  C +   
Sbjct: 53  ENEKEGFPITALREIKILQLLKHENVVNLIEICRTKAS 90

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 21/85 (24%)

Query: 374 LLGEGGFGSVYKGYLPD---GREVAIKQLKIGGGQGE---REFKAEVEIISRIHHRHLVS 427
            LG GG  +VY     D     +VAIK + I   + E   + F+ EV   S++ H+++VS
Sbjct: 18  KLGGGGMSTVYLAE--DTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVS 75

Query: 428 LVGYCISDDRRLLIYDYVPNNTLYF 452
                        + D    +  Y+
Sbjct: 76  -------------MIDVDEEDDCYY 87

>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Length = 810

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 23/112 (20%), Positives = 30/112 (26%), Gaps = 2/112 (1%)

Query: 97  SPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSV 156
           + P    P        R              P P +D     PP   PP  +  P   S 
Sbjct: 1   AAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSN 60

Query: 157 EPPK--RSPPSVPPQNPPPPPSSSPPKNSPPAPIAVPPSNVPPPPTQTPPTP 206
             P   RS  +  P+N      S  P      P      ++ PPP       
Sbjct: 61  ASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLI 112

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 32/153 (20%), Positives = 39/153 (25%), Gaps = 2/153 (1%)

Query: 32  VSNPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSSPPP 91
           VS   +  PP          +     P          PA  P   +P   + P      P
Sbjct: 78  VSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGP 137

Query: 92  SPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPP 151
           S    +P         +   T S     +  PP     PP       PP    P     P
Sbjct: 138 SQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRP 197

Query: 152 PPSSVEPPKRSPPSVPPQNPPPPPSSSPPKNSP 184
           P     P    P    P   PPP    PP    
Sbjct: 198 PMGP--PMGIPPGRGTPMGMPPPGMRPPPPGMR 228

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 9/95 (9%)

Query: 369 FADQNLLGEGGFGSVYKGYLPD-GREVAIKQLK---IGGGQGEREFKAEVEIISRIH--- 421
           F+   ++G GGFG VY     D G+  A+K L    I   QGE     E  ++S +    
Sbjct: 191 FSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGD 250

Query: 422 HRHLVSLVGYCISDDRRL-LIYDYVPNNTLYFHLH 455
              +V +  Y      +L  I D +    L++HL 
Sbjct: 251 CPFIVCMS-YAFHTPDKLSFILDLMNGGDLHYHLS 284

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 22/97 (22%), Positives = 47/97 (48%), Gaps = 20/97 (20%)

Query: 355 SMFTYEELVKATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGE-----R 408
           S   +++L K          LG G + +VYKG     G  VA+K++K+   +G      R
Sbjct: 3   SSSQFKQLEK----------LGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIR 52

Query: 409 EFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV 445
               E+ ++  + H ++V L     ++++  L+++++
Sbjct: 53  ----EISLMKELKHENIVRLYDVIHTENKLTLVFEFM 85

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 5/73 (6%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYC 432
           LGEG F    K       +  A+K +     + E   + E+  +     H ++V L    
Sbjct: 19  LGEGSFSICRKCVHKKSNQAFAVKIIS---KRMEANTQKEITALKLCEGHPNIVKLHEVF 75

Query: 433 ISDDRRLLIYDYV 445
                  L+ + +
Sbjct: 76  HDQLHTFLVMELL 88

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 20/114 (17%), Positives = 42/114 (36%), Gaps = 30/114 (26%)

Query: 349 GLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGE 407
           G   S +   YE + +          +G G +G+VYK      G  VA+K +++      
Sbjct: 1   GPLGSMATSRYEPVAE----------IGVGAYGTVYKARDPHSGHFVALKSVRVP---NG 47

Query: 408 REFKAEV------EI-----ISRIHHRHLVSL----VGYCISDDRRL-LIYDYV 445
                 +      E+     +    H ++V L           + ++ L++++V
Sbjct: 48  GGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHV 101

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 15/91 (16%), Positives = 25/91 (27%), Gaps = 18/91 (19%)

Query: 342 NSPQDPGGLGHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQL- 399
                P  +        Y+  VK          +G G FG             VA+K + 
Sbjct: 5   PVTTGPLDMPIMHDSDRYD-FVK---------DIGSGNFGVARLMRDKLTKELVAVKYIE 54

Query: 400 --KIGGGQGEREFKAEVEIISRIHHRHLVSL 428
                    +R    E+     + H ++V  
Sbjct: 55  RGAAIDENVQR----EIINHRSLRHPNIVRF 81

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 10/90 (11%)

Query: 374 LLGEGGFGSVY---KGYLPDGREV-AIKQLK---IGGGQGEREFKAEVEIISRIHHRHLV 426
           +LG+G FG V+   K    D R++ A+K LK   +         K E +I+  ++H  +V
Sbjct: 31  VLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRD-RVRTKMERDILVEVNHPFIV 89

Query: 427 SLVGYCISDDRRL-LIYDYVPNNTLYFHLH 455
            L  Y    + +L LI D++    L+  L 
Sbjct: 90  KLH-YAFQTEGKLYLILDFLRGGDLFTRLS 118

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 11/55 (20%), Positives = 21/55 (38%)

Query: 34  NPPKSSPPPPPVSKPPTTSPPPSPPASNPPTSSSPPASSPPTSSPPPASNPPTSS 88
               ++   P   + P  +P  S PA      +   A++P  ++   A  P  +S
Sbjct: 94  PSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKAS 148

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 41.5 bits (97), Expect = 7e-04
 Identities = 10/51 (19%), Positives = 17/51 (33%)

Query: 85  PTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPPSSTPPPNSPPSPPSDPP 135
           P+       PA        P   +  P  + P P +   P +  +  +D P
Sbjct: 94  PSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEP 144

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 11/66 (16%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQL------KIGGGQGEREFKAEVEIISRIH----H 422
           LLG+GGFG+V+ G+ L D  +VAIK +                   EV ++ ++     H
Sbjct: 38  LLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGH 97

Query: 423 RHLVSL 428
             ++ L
Sbjct: 98  PGVIRL 103

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 19/99 (19%)

Query: 356 MFTYEELVKATDGFADQNLLGEGGFGSVYKG-YLPDGREVAIKQLKIGGGQGERE-FKA- 412
           M  YE++ K          +GEG +G V+K      G+ VAIK+        +    K  
Sbjct: 2   MEKYEKIGK----------IGEGSYGVVFKCRNRDTGQIVAIKKFLES---EDDPVIKKI 48

Query: 413 ---EVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNN 448
              E+ ++ ++ H +LV+L+       R  L+++Y  + 
Sbjct: 49  ALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFEYCDHT 87

>3vf0_A Vinculin, metavinculin; cytoskeletal F-actin binding protein, CEL adhesion-protein binding complex; HET: EPE; 2.54A {Homo sapiens} Length = 283

 Score = 40.4 bits (93), Expect = 7e-04
 Identities = 23/115 (20%), Positives = 32/115 (27%)

Query: 59  ASNPPTSSSPPASSPPTSSPPPASNPPTSSPPPSPPASSPPTISPPPPVSNPPTRSPPPP 118
            S+    + P    P    PPP   PP       P   +   I+ P  ++          
Sbjct: 1   GSHMDELAPPKPPLPEGEVPPPRPPPPEEKDEEFPEQKAGEVINQPMMMAARQLHDEARK 60

Query: 119 SSTPPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPP 173
            S+ P            A +         +PP      EP     PS  P N P 
Sbjct: 61  WSSKPGIPAAEVGIGVVAEADAADAAGFPVPPDMEDDYEPELLLMPSNQPVNQPI 115

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 40.6 bits (95), Expect = 8e-04
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 367 DGFADQNLLGEGGFGSVYKG-YLPDGREVAIKQLKIGGGQGEREF-KAEVEIISRIHHRH 424
           D F   + LG G  G V+K  + P G  +A K + +      R     E++++   +  +
Sbjct: 33  DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPY 92

Query: 425 LV 426
           +V
Sbjct: 93  IV 94

>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1 Length = 332

 Score = 40.5 bits (94), Expect = 9e-04
 Identities = 9/54 (16%), Positives = 18/54 (33%)

Query: 122 PPPNSPPSPPSDPPANSPPPSNPPSNLPPPPPSSVEPPKRSPPSVPPQNPPPPP 175
               + PSP         P +  P+       +++  P   P ++   + P  P
Sbjct: 19  RHMPAAPSPAPAGAVAGGPAAGVPAAASGAAEAAMPLPAALPGALAGSHAPRLP 72

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	479
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	99.87
4aoj_A	329	High affinity nerve growth factor receptor; transf	99.86
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	99.85
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	99.82
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	99.81
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.81
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.81
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	99.8
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.79
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.79
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	99.78
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	99.78
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.77
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.76
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.76
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.73
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.72
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.7
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.7
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.7
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.68
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.68
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.67
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.67
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.66
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.66
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.66
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.66
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.66
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.65
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.65
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.65
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.65
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.65
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.65
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.64
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.64
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.64
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.64
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.64
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.64
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.64
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.64
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.64
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.64
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.64
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.64
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.63
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.63
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.63
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.63
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.63
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.63
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.63
3uqc_A	286	Probable conserved transmembrane protein; structur	99.63
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.63
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.63
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.63
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.63
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.63
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.62
3bhy_A	283	Death-associated protein kinase 3; death associate	99.62
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.62
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.62
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.62
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.62
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.62
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.62
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.62
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.62
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.61
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.61
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.61
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.61
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.61
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.61
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.61
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.61
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.61
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.61
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.61
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.61
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.61
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.6
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.6
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.6
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.6
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.6
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.6
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.6
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.6
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.6
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.6
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.6
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.6
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.6
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.6
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.6
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.6
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.59
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.59
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.59
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.59
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.59
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.59
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.59
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.59
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.59
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.59
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.59
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.59
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.59
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.59
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.59
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.59
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.58
3niz_A	311	Rhodanese family protein; structural genomics, str	99.58
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.58
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.58
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.58
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.58
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.58
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.58
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.58
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.58
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.58
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.58
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.58
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.58
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.58
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.58
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.58
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.58
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.57
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.57
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.57
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.57
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.57
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.57
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.57
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.57
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.57
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.57
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.57
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.57
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.57
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.57
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.57
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.57
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.57
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.57
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.56
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.56
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.56
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.56
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.56
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.56
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.56
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.56
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.56
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.56
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.56
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.55
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.55
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.55
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.55
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.55
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.55
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.55
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.55
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.54
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.54
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.54
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.54
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.53
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.53
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.53
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.53
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.53
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.53
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.53
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.53
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.52
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.52
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.52
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.52
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.52
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.52
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.52
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.52
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.52
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.52
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.51
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.5
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.5
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.5
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.5
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.5
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.5
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.49
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.49
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.49
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.49
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.49
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.49
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.49
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.48
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.48
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.48
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.48
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.47
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.47
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.47
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.47
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.47
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.47
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.47
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.47
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.47
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.46
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.46
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.46
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.45
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.45
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.44
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.44
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.44
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.44
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.43
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.43
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.43
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.42
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.42
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.41
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.41
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.41
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.41
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.41
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.4
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.4
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.39
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.39
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.38
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.37
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.37
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.33
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.33
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.32
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.32
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.31
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.23
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.08
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	98.88
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	98.8
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	98.63
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	98.39
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.08
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	98.01
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	97.44
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	96.95
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	96.88
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	96.83
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	96.8
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	96.71
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	96.62
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	96.32
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	96.25
3ats_A	357	Putative uncharacterized protein; hypothetical pro	96.08
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	95.93
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	95.65
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	95.57
2k1k_A	38	Ephrin type-A receptor 1; EPHA1, receptor tyrosine	95.34
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	94.87
2k9y_A	41	Ephrin type-A receptor 2; receptor tyrosine kinase	94.24
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	94.02
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	93.73
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	93.52
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	93.49
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	92.98
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	92.66
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	92.48
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	92.46
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	91.91
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	91.21
1iij_A	35	ERBB-2 receptor protein-tyrosine kinase; alpha-hel	90.59
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	90.29
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	89.95
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	88.6
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	84.98
3mes_A	424	Choline kinase; malaria, structural genomics, stru	84.3
2l8s_A	54	Integrin alpha-1; transmembrane region, detergent	82.36
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	80.18

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=99.87  E-value=2.3e-22  Score=199.61  Aligned_cols=91  Identities=27%  Similarity=0.559  Sum_probs=79.4

Q ss_pred             cCccccccccccCccceEEEEeC------CCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~------~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~L  440 (479)
                      ++|...+.||+|+||+||+|++.      +|+.||||+|+.......++|.+|+++|++|+|+|||+|+|+|.+++..||
T Consensus        13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l   92 (299)
T 4asz_A           13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM   92 (299)
T ss_dssp             GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEE
Confidence            56777899999999999999863      367899999987665666789999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcC
Q 011696          441 IYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~  457 (479)
                      |||||++|+|+++|+..
T Consensus        93 V~Ey~~~G~L~~~l~~~  109 (299)
T 4asz_A           93 VFEYMKHGDLNKFLRAH  109 (299)
T ss_dssp             EEECCTTCBHHHHHHHT
T ss_pred             EEEcCCCCcHHHHHHhc
Confidence            99999999999999864

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=99.86  E-value=3.9e-22  Score=200.50  Aligned_cols=91  Identities=27%  Similarity=0.520  Sum_probs=81.1

Q ss_pred             cCccccccccccCccceEEEEeC------CCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~------~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~L  440 (479)
                      ++|...++||+|+||+||+|++.      +++.||||+|+.......++|++|+++|++|+|+|||+|+|+|.+.+..||
T Consensus        41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l  120 (329)
T 4aoj_A           41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM  120 (329)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence            45677789999999999999864      367899999986665566789999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcC
Q 011696          441 IYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~  457 (479)
                      |||||++|+|++||+..
T Consensus       121 V~Ey~~~G~L~~~l~~~  137 (329)
T 4aoj_A          121 VFEYMRHGDLNRFLRSH  137 (329)
T ss_dssp             EEECCTTCBHHHHHHTS
T ss_pred             EEEcCCCCcHHHHHHhc
Confidence            99999999999999864

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=99.85  E-value=1.8e-21  Score=193.86  Aligned_cols=90  Identities=32%  Similarity=0.444  Sum_probs=76.9

Q ss_pred             CccccccccccCccceEEEEeC------CCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEE
Q 011696          368 GFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~------~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~L  440 (479)
                      ++.+.+.||+|+||+||+|++.      +++.||||+|+.... ...++|.+|+++|++|+|+|||+|+|+|.+++..+|
T Consensus        27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l  106 (308)
T 4gt4_A           27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM  106 (308)
T ss_dssp             GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred             HCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEE
Confidence            3555678999999999999862      467899999975443 345689999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcC
Q 011696          441 IYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~  457 (479)
                      |||||++|||++||+.+
T Consensus       107 V~Ey~~~G~L~~~L~~~  123 (308)
T 4gt4_A          107 IFSYCSHGDLHEFLVMR  123 (308)
T ss_dssp             EEECCSSCBHHHHHHTT
T ss_pred             EEEcCCCCcHHHHHHhh
Confidence            99999999999999753

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=99.82  E-value=2.3e-20  Score=188.31  Aligned_cols=112  Identities=16%  Similarity=0.216  Sum_probs=94.0

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      +.|...+.||+|+||+||+|+. .+|+.||||+++.......+.|.+|+++|++|+|+|||+|+++|.+++.+|||||||
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~  153 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL  153 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCC
Confidence            4577888999999999999986 468999999998666666678999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          446 PNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       446 ~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      ++|+|+++|+.+ .+.++...++..-++.++.||
T Consensus       154 ~gg~L~~~l~~~-~l~e~~~~~~~~qi~~aL~yl  186 (346)
T 4fih_A          154 EGGALTDIVTHT-RMNEEQIAAVCLAVLQALSVL  186 (346)
T ss_dssp             TTEEHHHHHHHS-CCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHcC-CCCHHHHHHHHHHHHHHHHHH
Confidence            999999988753 355555556665556665554

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=99.81  E-value=4.7e-20  Score=186.33  Aligned_cols=112  Identities=19%  Similarity=0.289  Sum_probs=84.8

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      ++|...+.||+|+||+||+|+. .+|+.||||+|+....  .+.++|++|+++|++|+|+|||+|+++|.+++..|||||
T Consensus        24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE  103 (350)
T 4b9d_A           24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD  103 (350)
T ss_dssp             CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEe
Confidence            5788889999999999999985 5689999999975443  334579999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCcc--cchhHHHHHHHHHHhhcc
Q 011696          444 YVPNNTLYFHLHGKWQL--GFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       444 y~~~GsL~~~L~~~~~~--~~~~~~~~~~l~~~~~~~  478 (479)
                      ||++|+|+++|+.+...  .++...++..-++.+|.|
T Consensus       104 y~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~y  140 (350)
T 4b9d_A          104 YCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKH  140 (350)
T ss_dssp             CCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999765433  333444444445555544

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.81  E-value=4.6e-20  Score=190.72  Aligned_cols=112  Identities=16%  Similarity=0.216  Sum_probs=94.2

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      +.|...+.||+|+||+||+|+. .+|+.||||+++.......+.|.+|+++|++|+|+|||+|+++|.+++.+|||||||
T Consensus       151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~  230 (423)
T 4fie_A          151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL  230 (423)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCC
Confidence            4588889999999999999986 568999999998766666778999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          446 PNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       446 ~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      ++|+|+++|+.+ .+.++...++..-++.+|.||
T Consensus       231 ~gG~L~~~i~~~-~l~e~~~~~~~~qil~aL~yl  263 (423)
T 4fie_A          231 EGGALTDIVTHT-RMNEEQIAAVCLAVLQALSVL  263 (423)
T ss_dssp             TTEEHHHHHHHS-CCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHhcc-CCCHHHHHHHHHHHHHHHHHH
Confidence            999999988754 345555555555556665554

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=99.81  E-value=5e-20  Score=183.18  Aligned_cols=110  Identities=24%  Similarity=0.371  Sum_probs=85.7

Q ss_pred             cCccccccccccCccceEEEEeCCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      ++|...++||+|+||+||+|++.+  .||||+++....  ...++|.+|+++|++|+|+|||+|+|+|. ++..||||||
T Consensus        36 ~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~-~~~~~iVmEy  112 (307)
T 3omv_A           36 SEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAIVTQW  112 (307)
T ss_dssp             TSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEEEC
T ss_pred             HHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEE-CCeEEEEEEc
Confidence            466778899999999999998743  599999975443  33467999999999999999999999985 4568999999


Q ss_pred             CCCCCHHHHHhcC-CcccchhHHHHHHHHHHhhccC
Q 011696          445 VPNNTLYFHLHGK-WQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       445 ~~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      |+||+|+++|+.+ ..+.+..+.++..-+..++.||
T Consensus       113 ~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yL  148 (307)
T 3omv_A          113 CEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYL  148 (307)
T ss_dssp             CSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999864 3455555544444444455443

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=99.80  E-value=3e-20  Score=184.82  Aligned_cols=113  Identities=21%  Similarity=0.230  Sum_probs=96.8

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+++...   ....+.|.+|+++|++|+|+|||+|++++.+++..||||
T Consensus        32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm  111 (311)
T 4aw0_A           32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL  111 (311)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            4688899999999999999985 578999999996432   334567999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      |||.+|||+++|+.+..+..+....+..-++.++.||
T Consensus       112 Ey~~gG~L~~~i~~~~~l~e~~~~~~~~qi~~al~yl  148 (311)
T 4aw0_A          112 SYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYL  148 (311)
T ss_dssp             CCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999998777777777777777777776664

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=99.79  E-value=1.3e-19  Score=178.92  Aligned_cols=110  Identities=21%  Similarity=0.226  Sum_probs=88.3

Q ss_pred             cccccccccCccceEEEEe-CCCCEEEEEEeecCC--CcchHhHHHHHHHHHhCCCCCccceEEEEEe----CCeEEEEE
Q 011696          370 ADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCIS----DDRRLLIY  442 (479)
Q Consensus       370 ~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~----~~~~~LV~  442 (479)
                      ...++||+|+||+||+|+. .+|+.||||++....  ....++|.+|+++|++|+|+|||+|+|+|.+    ++..||||
T Consensus        29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm  108 (290)
T 3fpq_A           29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT  108 (290)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence            4456799999999999986 468899999996443  2334579999999999999999999999875    34578999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      |||.+|+|+++|+.+..+.++...++..-++.++.||
T Consensus       109 Ey~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~yl  145 (290)
T 3fpq_A          109 ELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFL  145 (290)
T ss_dssp             ECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999998776666666666666566666554

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.79  E-value=1.1e-19  Score=180.58  Aligned_cols=107  Identities=21%  Similarity=0.269  Sum_probs=80.5

Q ss_pred             cCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHh--HHHHHHHHHhCCCCCccceEEEEEeCC----eEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGERE--FKAEVEIISRIHHRHLVSLVGYCISDD----RRLL  440 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~--f~~Ei~il~~l~HpNIv~LlG~~~~~~----~~~L  440 (479)
                      ++|..+++||+|+||+||+|++ +|+.||||+|+..   +.++  +.+|+.++.+|+|+|||+|+|+|.+++    .+||
T Consensus         3 r~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~---~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~l   78 (303)
T 3hmm_A            3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWL   78 (303)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECcc---chhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEE
Confidence            3467788999999999999998 7899999999642   2333  445666667899999999999998765    5789


Q ss_pred             EEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          441 IYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||||+||+|+++|+.+. +.++.+.++..-...++.|
T Consensus        79 V~Ey~~~gsL~~~l~~~~-l~~~~~~~i~~~ia~gl~y  115 (303)
T 3hmm_A           79 VSDYHEHGSLFDYLNRYT-VTVEGMIKLALSTASGLAH  115 (303)
T ss_dssp             EEECCTTCBHHHHHHHCC-BCHHHHHHHHHHHHHHHHH
T ss_pred             EecCCCCCcHHHHHHhCC-CCHHHHHHHHHHHHHHHHH
Confidence            999999999999998643 3444444444333334433

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=99.78  E-value=5.3e-19  Score=173.10  Aligned_cols=112  Identities=21%  Similarity=0.306  Sum_probs=90.8

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...+.||+|+||+||+|+. .+|+.||||+++...   ....+.|.+|+++|++|+|+|||+|++++.+++..||||
T Consensus        13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm   92 (275)
T 3hyh_A           13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI   92 (275)
T ss_dssp             -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence            5788899999999999999985 568999999996443   233457999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      ||| +|+|+++|..+..+..+...++..-++.++.||
T Consensus        93 Ey~-~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~yl  128 (275)
T 3hyh_A           93 EYA-GNELFDYIVQRDKMSEQEARRFFQQIISAVEYC  128 (275)
T ss_dssp             ECC-CEEHHHHHHHSCSCCHHHHHHHHHHHHHHHHHH
T ss_pred             eCC-CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            999 789999998877777777777777666666654

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=99.78  E-value=2.2e-19  Score=180.49  Aligned_cols=108  Identities=17%  Similarity=0.106  Sum_probs=91.6

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      +.|...++||+|+||+||+|+. .+|+.||||+++...     .+.+|+++|++|+|+|||+|+|+|.+++..|||||||
T Consensus        58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~-----~~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~  132 (336)
T 4g3f_A           58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEV-----FRVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELL  132 (336)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTT-----CCTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHH-----hHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEecc
Confidence            4577778899999999999985 568999999997432     2457999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          446 PNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       446 ~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      ++|+|+++|+.+..+.++...++..-++.++.||
T Consensus       133 ~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~yl  166 (336)
T 4g3f_A          133 EGGSLGQLIKQMGCLPEDRALYYLGQALEGLEYL  166 (336)
T ss_dssp             TTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999998777777777777766666666664

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.77  E-value=3.6e-19  Score=180.52  Aligned_cols=101  Identities=27%  Similarity=0.394  Sum_probs=83.3

Q ss_pred             ccHHHHHHHhcCccccccccccCccceEEEEeCC------CCEEEEEEeecCCCc-chHhHHHHHHHHHhCCC-CCccce
Q 011696          357 FTYEELVKATDGFADQNLLGEGGFGSVYKGYLPD------GREVAIKQLKIGGGQ-GEREFKAEVEIISRIHH-RHLVSL  428 (479)
Q Consensus       357 ~~~eel~~~~~~f~~~~~IG~G~fG~Vykg~~~~------g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~H-pNIv~L  428 (479)
                      +..++++...++|...++||+|+||+||+|++.+      ++.||||+|+..... +.++|++|+++|++|+| +|||+|
T Consensus        54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l  133 (353)
T 4ase_A           54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL  133 (353)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             CCCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEE
Confidence            3445565667889999999999999999998532      357999999865543 34679999999999965 899999


Q ss_pred             EEEEEeC-CeEEEEEecCCCCCHHHHHhcC
Q 011696          429 VGYCISD-DRRLLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       429 lG~~~~~-~~~~LV~Ey~~~GsL~~~L~~~  457 (479)
                      +|+|.+. +.+|||||||++|+|.+||+.+
T Consensus       134 ~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~  163 (353)
T 4ase_A          134 LGACTKPGGPLMVIVEFCKFGNLSTYLRSK  163 (353)
T ss_dssp             EEEECCTTSCCEEEEECCTTEEHHHHHHHT
T ss_pred             EEEEEecCCEEEEEEEcCCCCCHHHHHHhc
Confidence            9999875 4689999999999999999864

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.76  E-value=1e-18  Score=173.32  Aligned_cols=94  Identities=19%  Similarity=0.378  Sum_probs=78.0

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCc-chHhHHHHHHHHHhCCCCCccceEEEEEeCC--------
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDD--------  436 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~--------  436 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+++..... ..++|++|+++|++|+|+|||+|+++|.+.+        
T Consensus         5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~   84 (299)
T 4g31_A            5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS   84 (299)
T ss_dssp             HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred             hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence            4588889999999999999985 56899999999765443 3457999999999999999999999997654        


Q ss_pred             ----eEEEEEecCCCCCHHHHHhcCCcc
Q 011696          437 ----RRLLIYDYVPNNTLYFHLHGKWQL  460 (479)
Q Consensus       437 ----~~~LV~Ey~~~GsL~~~L~~~~~~  460 (479)
                          .+|||||||.+|+|.++|+++..+
T Consensus        85 ~~~~~l~ivmE~~~gg~L~~~l~~~~~~  112 (299)
T 4g31_A           85 SPKVYLYIQMQLCRKENLKDWMNGRCTI  112 (299)
T ss_dssp             --CEEEEEEEECCCSCCHHHHHHTCCSG
T ss_pred             CCCcEEEEEEecCCCCcHHHHHHhcCCC
Confidence                368999999999999999876543

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.76  E-value=1.7e-19  Score=179.02  Aligned_cols=113  Identities=22%  Similarity=0.259  Sum_probs=87.6

Q ss_pred             cCccccccccccCccceEEEEe----CCCCEEEEEEeecCC--CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL----PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~----~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~L  440 (479)
                      ++|...++||+|+||+||+|+.    ..++.||||+++...  ..+..+|.+|+++|++|+|+|||+|++++.+++..||
T Consensus        24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i  103 (304)
T 3ubd_A           24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL  103 (304)
T ss_dssp             GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred             cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence            4688889999999999999974    246789999996433  2234479999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          441 IYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      |||||.+|||+++|+.+..+..+....+..-++.++.||
T Consensus       104 vmEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~yl  142 (304)
T 3ubd_A          104 ILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHL  142 (304)
T ss_dssp             EECCCTTCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999998766666666666666666666554

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.73  E-value=5.8e-18  Score=182.35  Aligned_cols=113  Identities=19%  Similarity=0.282  Sum_probs=94.6

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      ++|...+.||+|+||+||+|+. .+|+.||||+|+.....+.+.|.+|+++|++|+|+|||+|+++|.+++.+|||||||
T Consensus       157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~~  236 (573)
T 3uto_A          157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFM  236 (573)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeec
Confidence            5788889999999999999985 568999999998665555667999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcC-CcccchhHHHHHHHHHHhhccC
Q 011696          446 PNNTLYFHLHGK-WQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       446 ~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      .+|+|+++|..+ ..+.++...++..-++.+|.||
T Consensus       237 ~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~yl  271 (573)
T 3uto_A          237 SGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHM  271 (573)
T ss_dssp             CCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999998654 3455555556655556665554

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.72  E-value=8.4e-18  Score=173.16  Aligned_cols=112  Identities=16%  Similarity=0.231  Sum_probs=92.7

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeC------Ce
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISD------DR  437 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~------~~  437 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+|+....  ...+.+++|+++|++|+|+|||+|++++...      +.
T Consensus        54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~  133 (398)
T 4b99_A           54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS  133 (398)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred             CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence            4688889999999999999985 5799999999964432  2345799999999999999999999998643      56


Q ss_pred             EEEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          438 RLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       438 ~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      +|||||||. |+|+++|+.+..+.++....+..-++.+|.||
T Consensus       134 ~~ivmE~~~-g~L~~~i~~~~~l~~~~~~~~~~qil~al~yl  174 (398)
T 4b99_A          134 VYVVLDLME-SDLHQIIHSSQPLTLEHVRYFLYQLLRGLKYM  174 (398)
T ss_dssp             EEEEEECCS-EEHHHHHTSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCC-CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            899999995 78999998877777777777777777777664

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.70  E-value=1.1e-17  Score=166.40  Aligned_cols=124  Identities=39%  Similarity=0.619  Sum_probs=99.5

Q ss_pred             ccccHHHHHHHhcCccccccccccCccceEEEEeCCCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEE
Q 011696          355 SMFTYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCI  433 (479)
Q Consensus       355 ~~~~~eel~~~~~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~  433 (479)
                      ..|+++++....++|...++||+|+||.||+|.+.+|+.||||+++.... ....+|.+|+++|++++|+||++++|+|.
T Consensus        18 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~   97 (326)
T 3uim_A           18 KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCM   97 (326)
T ss_dssp             EECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEEC
T ss_pred             ceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEEe
Confidence            35788999999999999999999999999999988899999999975443 23347999999999999999999999999


Q ss_pred             eCCeEEEEEecCCCCCHHHHHhcCCc----ccchhHHHHHHHHHHhhcc
Q 011696          434 SDDRRLLIYDYVPNNTLYFHLHGKWQ----LGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       434 ~~~~~~LV~Ey~~~GsL~~~L~~~~~----~~~~~~~~~~~l~~~~~~~  478 (479)
                      +.+..+||||||.+|+|.++|+.+..    +.+..+.++..-++.++.|
T Consensus        98 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~  146 (326)
T 3uim_A           98 TPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAY  146 (326)
T ss_dssp             CSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999986543    3333444443333444433

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.70  E-value=5.1e-18  Score=168.81  Aligned_cols=99  Identities=43%  Similarity=0.709  Sum_probs=88.8

Q ss_pred             HHHHHHhcCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEE
Q 011696          360 EELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL  439 (479)
Q Consensus       360 eel~~~~~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~  439 (479)
                      .++...+++|...++||+|+||.||+|++.+|+.||||++........++|.+|+++|++++|+||++++|+|.+.+..+
T Consensus        32 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  111 (321)
T 2qkw_B           32 VDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMI  111 (321)
T ss_dssp             SCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTCCE
T ss_pred             HHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCeEE
Confidence            34455678899999999999999999998889999999998766666778999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcCC
Q 011696          440 LIYDYVPNNTLYFHLHGKW  458 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~~  458 (479)
                      ||||||.+|+|.++|++..
T Consensus       112 lv~e~~~~~~L~~~l~~~~  130 (321)
T 2qkw_B          112 LIYKYMENGNLKRHLYGSD  130 (321)
T ss_dssp             EEEECCTTCBTGGGSSSSC
T ss_pred             EEEEcCCCCcHHHHHhccC
Confidence            9999999999999997643

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.70  E-value=6.3e-17  Score=161.43  Aligned_cols=121  Identities=17%  Similarity=0.205  Sum_probs=96.8

Q ss_pred             cccHHHHHHHhcC----------ccccccccccCccceEEEEeC-CCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCC
Q 011696          356 MFTYEELVKATDG----------FADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRH  424 (479)
Q Consensus       356 ~~~~eel~~~~~~----------f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpN  424 (479)
                      .++++++..++++          |...+.||+|+||+||+|+.. +|+.||||+++.......+.|.+|+++|++++|+|
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n  103 (321)
T 2c30_A           24 VVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFN  103 (321)
T ss_dssp             -CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCTT
T ss_pred             cCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCCC
Confidence            4778888887764          555678999999999999865 79999999998766666778999999999999999


Q ss_pred             ccceEEEEEeCCeEEEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhc
Q 011696          425 LVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       425 Iv~LlG~~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~  477 (479)
                      |++++++|...+..+||||||.+|+|.++++.. .+.++...++..-++.++.
T Consensus       104 iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~l~~~~~~~i~~qi~~~L~  155 (321)
T 2c30_A          104 VVEMYKSYLVGEELWVLMEFLQGGALTDIVSQV-RLNEEQIATVCEAVLQALA  155 (321)
T ss_dssp             BCCEEEEEEETTEEEEEECCCCSCBHHHHHTTC-CCCHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEEECCEEEEEEecCCCCCHHHHHHhc-CCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998753 3333333333333333343

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.68  E-value=7.1e-17  Score=159.59  Aligned_cols=112  Identities=21%  Similarity=0.286  Sum_probs=91.9

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||++........++|.+|+++|++|+|+||++++|+|.+++..+||||||
T Consensus        10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~   89 (310)
T 3s95_A           10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYI   89 (310)
T ss_dssp             GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             hHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEec
Confidence            5678889999999999999986 468899999997655566678999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhc-CCcccchhHHHHHHHHHHhhcc
Q 011696          446 PNNTLYFHLHG-KWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       446 ~~GsL~~~L~~-~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      .+|+|.++++. +..+.+....++..-++.++.|
T Consensus        90 ~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~  123 (310)
T 3s95_A           90 KGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAY  123 (310)
T ss_dssp             TTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999986 3344444444444444444443

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.68  E-value=1.6e-16  Score=156.57  Aligned_cols=101  Identities=36%  Similarity=0.692  Sum_probs=89.5

Q ss_pred             ccccHHHHHHHhcCcccc------ccccccCccceEEEEeCCCCEEEEEEeecCC----CcchHhHHHHHHHHHhCCCCC
Q 011696          355 SMFTYEELVKATDGFADQ------NLLGEGGFGSVYKGYLPDGREVAIKQLKIGG----GQGEREFKAEVEIISRIHHRH  424 (479)
Q Consensus       355 ~~~~~eel~~~~~~f~~~------~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~----~~~~~~f~~Ei~il~~l~HpN  424 (479)
                      ..|+++++..++++|...      ++||+|+||.||+|++ +++.||||++....    ....+.|.+|+++|++|+|+|
T Consensus        13 ~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~   91 (307)
T 2nru_A           13 HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHEN   91 (307)
T ss_dssp             EECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTT
T ss_pred             CcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCC
Confidence            458899999999999877      8899999999999987 78899999996432    223457999999999999999


Q ss_pred             ccceEEEEEeCCeEEEEEecCCCCCHHHHHhc
Q 011696          425 LVSLVGYCISDDRRLLIYDYVPNNTLYFHLHG  456 (479)
Q Consensus       425 Iv~LlG~~~~~~~~~LV~Ey~~~GsL~~~L~~  456 (479)
                      |++++|+|.+.+..+|||||+.+|+|.++++.
T Consensus        92 i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~  123 (307)
T 2nru_A           92 LVELLGFSSDGDDLCLVYVYMPNGSLLDRLSC  123 (307)
T ss_dssp             BCCEEEEECSSSSCEEEEECCTTCBHHHHHHT
T ss_pred             eEEEEEEEecCCceEEEEEecCCCcHHHHHHh
Confidence            99999999999999999999999999999874

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.67  E-value=9.3e-17  Score=163.33  Aligned_cols=110  Identities=17%  Similarity=0.232  Sum_probs=87.7

Q ss_pred             HHhcCccccccccccCccceEEEEeC----CCCEEEEEEeecCCCcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeE
Q 011696          364 KATDGFADQNLLGEGGFGSVYKGYLP----DGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRR  438 (479)
Q Consensus       364 ~~~~~f~~~~~IG~G~fG~Vykg~~~----~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~  438 (479)
                      ...+.|...++||+|+||+||+|+..    .++.||||++...  ....++.+|+++|+++ +|+|||+|++++.+.+..
T Consensus        18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~--~~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~   95 (361)
T 4f9c_A           18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPT--SHPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHV   95 (361)
T ss_dssp             GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTT--SCHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEE
T ss_pred             CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccc--cCHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEE
Confidence            34577999999999999999999742    4678999998643  3355789999999998 799999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          439 LLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||||||++|+|+++++.   +.++....+..-++.+|.|
T Consensus        96 ~lvmE~~~g~~L~~~~~~---l~~~~~~~~~~qll~al~y  132 (361)
T 4f9c_A           96 VIAMPYLEHESFLDILNS---LSFQEVREYMLNLFKALKR  132 (361)
T ss_dssp             EEEEECCCCCCHHHHHTT---CCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCcccHHHHHcC---CCHHHHHHHHHHHHHHHHH
Confidence            999999999999887742   4444555555555555544

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.67  E-value=2.4e-16  Score=155.39  Aligned_cols=110  Identities=15%  Similarity=0.240  Sum_probs=89.7

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      ++|...++||+|+||+||+|.. .+|+.||||+++.......+.|.+|+.+|++++|+||++++++|...+..+||||||
T Consensus        20 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~   99 (297)
T 3fxz_A           20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL   99 (297)
T ss_dssp             GTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             hceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEECC
Confidence            5688889999999999999984 578999999998666666778999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCcccchhHHHHHHHHHHhhc
Q 011696          446 PNNTLYFHLHGKWQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       446 ~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~  477 (479)
                      .+|+|.++++.+. +.+....++..-++.++.
T Consensus       100 ~~~~L~~~~~~~~-~~~~~~~~~~~qi~~~l~  130 (297)
T 3fxz_A          100 AGGSLTDVVTETC-MDEGQIAAVCRECLQALE  130 (297)
T ss_dssp             TTCBHHHHHHHSC-CCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHhhcC-CCHHHHHHHHHHHHHHHH
Confidence            9999999987652 333333333333333333

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.66  E-value=6.6e-17  Score=168.59  Aligned_cols=120  Identities=17%  Similarity=0.214  Sum_probs=96.2

Q ss_pred             HHHHHHHhcCccccccccccCccceEEEEeC-CCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEe
Q 011696          359 YEELVKATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCIS  434 (479)
Q Consensus       359 ~eel~~~~~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~  434 (479)
                      +.++....++|...++||+|+||+||+|+.. +|+.||||+++...   ....+.|.+|+++|.+++|+|||+|+++|.+
T Consensus        66 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~  145 (437)
T 4aw2_A           66 VKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQD  145 (437)
T ss_dssp             HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred             hhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee
Confidence            4455556788999999999999999999975 47889999996422   2223459999999999999999999999999


Q ss_pred             CCeEEEEEecCCCCCHHHHHhc-CCcccchhHHHHHHHHHHhhcc
Q 011696          435 DDRRLLIYDYVPNNTLYFHLHG-KWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       435 ~~~~~LV~Ey~~~GsL~~~L~~-~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      .+..|||||||.+|+|.++|+. +..+.++....+..-++.++.|
T Consensus       146 ~~~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~  190 (437)
T 4aw2_A          146 DNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDS  190 (437)
T ss_dssp             SSEEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999986 3455555555555555555544

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.66  E-value=1.9e-16  Score=158.83  Aligned_cols=113  Identities=19%  Similarity=0.242  Sum_probs=93.2

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCC--CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      .++|...++||+|+||+||+|+. .+|+.||||+++...  ....++|.+|+++|++++|+||++|+++|.+.+..+|||
T Consensus        14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~   93 (328)
T 3fe3_A           14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIM   93 (328)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEE
Confidence            46788889999999999999986 678999999997543  233457999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||.+|+|.+++..+..+..+...++..-++.++.|
T Consensus        94 e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~  129 (328)
T 3fe3_A           94 EYASGGEVFDYLVAHGRMKEKEARSKFRQIVSAVQY  129 (328)
T ss_dssp             CCCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999876665555555555555555544

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.66  E-value=9.8e-17  Score=163.68  Aligned_cols=112  Identities=23%  Similarity=0.318  Sum_probs=87.7

Q ss_pred             cCccccccccccCccceEEEEeC----CCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP----DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~----~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      ++|...++||+|+||+||+|++.    +++.||||+++.... ...++|.+|+++|++|+|+|||+++|+|.+.+..+||
T Consensus        45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv  124 (373)
T 2qol_A           45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIV  124 (373)
T ss_dssp             GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEE
T ss_pred             hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEEE
Confidence            46788899999999999999864    467899999976543 3345799999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCC-cccchhHHHHHHHHHHhhcc
Q 011696          442 YDYVPNNTLYFHLHGKW-QLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~~-~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||||++|+|.++|+.+. .+.+....++..-++.++.|
T Consensus       125 ~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~  162 (373)
T 2qol_A          125 TEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKY  162 (373)
T ss_dssp             EECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             EeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999998643 34444444444334444433

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.66  E-value=1.3e-16  Score=172.86  Aligned_cols=113  Identities=22%  Similarity=0.294  Sum_probs=92.4

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhH---HHHHHHHHhCCCCCccceEEEEEeCCeEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREF---KAEVEIISRIHHRHLVSLVGYCISDDRRL  439 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f---~~Ei~il~~l~HpNIv~LlG~~~~~~~~~  439 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+|+...   ......+   .+|+.+|+.++|+|||+|++++.+.+.+|
T Consensus       189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~ly  268 (689)
T 3v5w_A          189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS  268 (689)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred             HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEE
Confidence            5688889999999999999985 568999999996322   1222223   34467778889999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          440 LIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      ||||||.||+|+++|+.+..+..+....+..-++.++.||
T Consensus       269 lVmEy~~GGdL~~~l~~~~~l~E~~a~~y~~qIl~aL~yL  308 (689)
T 3v5w_A          269 FILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHM  308 (689)
T ss_dssp             EEECCCCSCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998877777777777777777777664

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.66  E-value=1.7e-16  Score=158.51  Aligned_cols=113  Identities=19%  Similarity=0.247  Sum_probs=91.7

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      ++|...++||+|+||+||+|+.. +|+.||||+++.... ...++|.+|+++|++++|+|||+|+|+|.+++..+|||||
T Consensus         7 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~   86 (323)
T 3tki_A            7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY   86 (323)
T ss_dssp             TCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             hhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEEc
Confidence            57888899999999999999864 788999999975443 3346799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          445 VPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       445 ~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      |.+|+|.++++.+..+.++...++..-++.++.||
T Consensus        87 ~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~L  121 (323)
T 3tki_A           87 CSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYL  121 (323)
T ss_dssp             CTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999998776666666666655555555543

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.65  E-value=1.1e-16  Score=158.89  Aligned_cols=113  Identities=23%  Similarity=0.273  Sum_probs=89.4

Q ss_pred             HHhcCccccccccccCccceEEEEeCCCCEEEEEEeecCCCc--chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEE
Q 011696          364 KATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       364 ~~~~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      ...++|...++||+|+||+||+|+. +|+.||||+++.....  ..++|.+|+++|++|+|+||++++|+|.+.+..+||
T Consensus        34 i~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  112 (309)
T 3p86_A           34 IPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIV  112 (309)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEE
T ss_pred             CChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEE
Confidence            3456788889999999999999987 7889999999755432  335799999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCc---ccchhHHHHHHHHHHhhc
Q 011696          442 YDYVPNNTLYFHLHGKWQ---LGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~~~---~~~~~~~~~~~l~~~~~~  477 (479)
                      ||||.+|+|.++|+....   +.+....++..-++.++.
T Consensus       113 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~  151 (309)
T 3p86_A          113 TEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMN  151 (309)
T ss_dssp             EECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             EecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999986542   333333333333444433

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.65  E-value=3.9e-16  Score=158.67  Aligned_cols=114  Identities=24%  Similarity=0.228  Sum_probs=94.0

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCc------chHhHHHHHHHHHhCCCCCccceEEEEEeCCeE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ------GEREFKAEVEIISRIHHRHLVSLVGYCISDDRR  438 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~------~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~  438 (479)
                      .++|...++||+|+||+||+|+. .+|+.||||.++.....      ..++|.+|+++|++|+|+||++|+++|.+.+..
T Consensus        11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~   90 (361)
T 2yab_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDV   90 (361)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred             hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEE
Confidence            35688889999999999999986 46889999999754321      346799999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          439 LLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      +||||||.+|+|+++|..+..+.+....++..-++.++.||
T Consensus        91 ~lv~e~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~L  131 (361)
T 2yab_A           91 VLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYL  131 (361)
T ss_dssp             EEEEECCCSCBHHHHHTTCSCCBHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998766666666666655555555543

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.65  E-value=4e-16  Score=150.84  Aligned_cols=109  Identities=23%  Similarity=0.360  Sum_probs=88.0

Q ss_pred             cCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~  446 (479)
                      ++|...+.||+|+||+||+|+..+++.||||+++... ...++|.+|+++|++++|+||++++++|.+.+..+||||||.
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   88 (269)
T 4hcu_A           10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFME   88 (269)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCT
T ss_pred             hhceeeheecCCCccEEEEEEecCCCeEEEEEecccc-cCHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeCC
Confidence            5677889999999999999998888899999997543 345689999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcCC-cccchhHHHHHHHHHHhh
Q 011696          447 NNTLYFHLHGKW-QLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       447 ~GsL~~~L~~~~-~~~~~~~~~~~~l~~~~~  476 (479)
                      +|+|.++++.+. .+.+....++..-++.++
T Consensus        89 ~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l  119 (269)
T 4hcu_A           89 HGCLSDYLRTQRGLFAAETLLGMCLDVCEGM  119 (269)
T ss_dssp             TCBHHHHHHTTTTCCCHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHhcCcccCHHHHHHHHHHHHHHH
Confidence            999999997543 233333333333333333

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.65  E-value=1.8e-16  Score=158.39  Aligned_cols=112  Identities=22%  Similarity=0.269  Sum_probs=87.6

Q ss_pred             cCccccccccccCccceEEEEeC----CCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP----DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~----~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      ++|...++||+|+||+||+|++.    +++.||||+++.... ...++|.+|+++|++|+|+||++++|+|.+.+..+||
T Consensus        49 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  128 (325)
T 3kul_A           49 SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIV  128 (325)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEEE
T ss_pred             hHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEEE
Confidence            45777899999999999999863    344699999975543 3345799999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcC-CcccchhHHHHHHHHHHhhcc
Q 011696          442 YDYVPNNTLYFHLHGK-WQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||||.+|+|.++|+.+ ..+.+....++..-++.++.|
T Consensus       129 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~  166 (325)
T 3kul_A          129 TEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRY  166 (325)
T ss_dssp             EECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             eeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999754 344444444444444444433

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.65  E-value=1.8e-16  Score=154.68  Aligned_cols=112  Identities=22%  Similarity=0.358  Sum_probs=90.9

Q ss_pred             cCccccccccccCccceEEEEeCC-C-------CEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPD-G-------REVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRR  438 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~-g-------~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~  438 (479)
                      ++|...++||+|+||+||+|+..+ +       +.||||.++.......++|.+|+++|++++|+||++++|+|.+.+..
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   87 (289)
T 4fvq_A            8 EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDEN   87 (289)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTCC
T ss_pred             hHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCCC
Confidence            567888999999999999998532 3       46999999766556667899999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCCc-ccchhHHHHHHHHHHhhcc
Q 011696          439 LLIYDYVPNNTLYFHLHGKWQ-LGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~~~-~~~~~~~~~~~l~~~~~~~  478 (479)
                      +||||||.+|+|.++|+.+.. +.+.++.++..-++.++.|
T Consensus        88 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~  128 (289)
T 4fvq_A           88 ILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHF  128 (289)
T ss_dssp             EEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999986543 5555555555444554444

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.64  E-value=3.2e-16  Score=152.07  Aligned_cols=112  Identities=16%  Similarity=0.163  Sum_probs=93.5

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      ++|...++||+|+||+||+|+.. +++.||||++......+.++|.+|+++|++++|+||++++++|.+.+..+|||||+
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   88 (277)
T 3f3z_A            9 QYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMELC   88 (277)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             hhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEecc
Confidence            56888899999999999999864 46789999998666666778999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          446 PNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       446 ~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      .+|+|.+++..+..+.+....++..-++.++.|
T Consensus        89 ~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~  121 (277)
T 3f3z_A           89 TGGELFERVVHKRVFRESDAARIMKDVLSAVAY  121 (277)
T ss_dssp             CSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999998876655555555555555555443

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.64  E-value=7.2e-16  Score=152.47  Aligned_cols=112  Identities=19%  Similarity=0.256  Sum_probs=90.3

Q ss_pred             cCccc-cccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEEEEe
Q 011696          367 DGFAD-QNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       367 ~~f~~-~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      +.|.. +++||+|+||+||+|+. .+|+.||||+++.......++|.+|+++|.++ +|+||++++++|.+++..+||||
T Consensus        12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e   91 (316)
T 2ac3_A           12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFE   91 (316)
T ss_dssp             TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEE
Confidence            34555 47899999999999984 57899999999866656677899999999995 79999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          444 YVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       444 y~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||.+|+|.++++.+..+.+.....+..-++.++.|
T Consensus        92 ~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~  126 (316)
T 2ac3_A           92 KMRGGSILSHIHKRRHFNELEASVVVQDVASALDF  126 (316)
T ss_dssp             CCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999876555555544444444444443

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.64  E-value=3.8e-16  Score=152.02  Aligned_cols=111  Identities=25%  Similarity=0.340  Sum_probs=86.5

Q ss_pred             hcCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      .++|...++||+|+||+||+|.+.+++.||||+++... ...++|.+|+++|++++|+||++++++|.+.+..+||||||
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~  101 (283)
T 3gen_A           23 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGS-MSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYM  101 (283)
T ss_dssp             GGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECCC
T ss_pred             HHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCC-CCHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEecc
Confidence            35678889999999999999999888899999997543 34568999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhc-CCcccchhHHHHHHHHHHhhc
Q 011696          446 PNNTLYFHLHG-KWQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       446 ~~GsL~~~L~~-~~~~~~~~~~~~~~l~~~~~~  477 (479)
                      .+|+|.++++. +..+.+....++..-++.++.
T Consensus       102 ~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~  134 (283)
T 3gen_A          102 ANGCLLNYLREMRHRFQTQQLLEMCKDVCEAME  134 (283)
T ss_dssp             TTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            99999999976 333444444444443444443

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.64  E-value=5.3e-16  Score=155.06  Aligned_cols=112  Identities=22%  Similarity=0.241  Sum_probs=91.9

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC------cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG------QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL  439 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~------~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~  439 (479)
                      ++|...++||+|+||+||+|.. .+|+.||||.++....      ...++|.+|+++|++|+|+||++++++|.+.+..+
T Consensus        11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~   90 (326)
T 2y0a_A           11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI   90 (326)
T ss_dssp             HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence            4578889999999999999986 4688999999975432      13567999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          440 LIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||||||.+|+|.+++..+..+.+.....+..-++.++.|
T Consensus        91 lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~  129 (326)
T 2y0a_A           91 LILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYY  129 (326)
T ss_dssp             EEEECCCSCBHHHHHTTSSCCBHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHH
Confidence            999999999999999876666555555555555555544

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.64  E-value=2.9e-16  Score=157.06  Aligned_cols=112  Identities=22%  Similarity=0.333  Sum_probs=84.8

Q ss_pred             cCccccccccccCccceEEEEe----CCCCEEEEEEeecCC----CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL----PDGREVAIKQLKIGG----GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRR  438 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~----~~g~~VAVK~l~~~~----~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~  438 (479)
                      ++|...++||+|+||+||+++.    .+|+.||||+++...    ......|.+|+++|++|+|+||++++++|.+++..
T Consensus        17 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~   96 (327)
T 3a62_A           17 ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKL   96 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSCE
T ss_pred             HHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCEE
Confidence            5688889999999999999986    478899999997543    22345689999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          439 LLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||||||.+|+|.++|..+..+.++....+..-++.++.|
T Consensus        97 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~  136 (327)
T 3a62_A           97 YLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGH  136 (327)
T ss_dssp             EEEEECCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999866555555444444444444443

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.64  E-value=7.1e-16  Score=156.52  Aligned_cols=111  Identities=17%  Similarity=0.190  Sum_probs=92.2

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      ++|...++||+|+||+||+++.. +|+.||||+++.... ..+++.+|+.+|++|+|+|||+|+++|.+.+..+||||||
T Consensus        20 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~   98 (361)
T 3uc3_A           20 DRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA-IDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEYA   98 (361)
T ss_dssp             TTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT-SCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             CcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc-ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEeC
Confidence            56888899999999999999864 788999999975432 3457999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          446 PNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       446 ~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      .+|+|.++++.+..+.+....++..-++.++.|
T Consensus        99 ~~~~L~~~l~~~~~~~~~~~~~i~~ql~~~L~~  131 (361)
T 3uc3_A           99 SGGELYERICNAGRFSEDEARFFFQQLLSGVSY  131 (361)
T ss_dssp             CSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999998776666666555555555555544

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.64  E-value=3.6e-16  Score=157.47  Aligned_cols=112  Identities=21%  Similarity=0.292  Sum_probs=92.3

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecC---CCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIG---GGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~---~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||+||+++. .+|+.||||+++..   .....+.+.+|+++|++++|+||++|+++|.+.+..||||
T Consensus         5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~   84 (337)
T 1o6l_A            5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVM   84 (337)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEEE
Confidence            5688889999999999999986 46899999999743   2334567999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||.+|+|.++|..+..+.++....+..-++.++.|
T Consensus        85 E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~  120 (337)
T 1o6l_A           85 EYANGGELFFHLSRERVFTEERARFYGAEIVSALEY  120 (337)
T ss_dssp             ECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred             eCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999876666555555555555555544

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.64  E-value=1.9e-16  Score=163.81  Aligned_cols=120  Identities=16%  Similarity=0.191  Sum_probs=96.2

Q ss_pred             HHHHHHHhcCccccccccccCccceEEEEeC-CCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEe
Q 011696          359 YEELVKATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCIS  434 (479)
Q Consensus       359 ~eel~~~~~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~  434 (479)
                      ++++....++|...++||+|+||+||+|+.. +|+.||||+++...   ....+.|.+|+++|+.++|+|||+|+++|.+
T Consensus        61 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~  140 (410)
T 3v8s_A           61 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD  140 (410)
T ss_dssp             HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             HHhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEE
Confidence            3445555678999999999999999999864 58899999996422   2234469999999999999999999999999


Q ss_pred             CCeEEEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          435 DDRRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       435 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      .+..|||||||.+|+|.++|+++ .+.+++...+..-++.++.||
T Consensus       141 ~~~~~lV~E~~~gg~L~~~l~~~-~~~e~~~~~~~~qi~~aL~~L  184 (410)
T 3v8s_A          141 DRYLYMVMEYMPGGDLVNLMSNY-DVPEKWARFYTAEVVLALDAI  184 (410)
T ss_dssp             SSEEEEEECCCTTEEHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCcHHHHHHcC-CCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998754 455666666666555555543

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.64  E-value=1.8e-16  Score=163.98  Aligned_cols=121  Identities=15%  Similarity=0.185  Sum_probs=96.5

Q ss_pred             cHHHHHHHhcCccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEE
Q 011696          358 TYEELVKATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCI  433 (479)
Q Consensus       358 ~~eel~~~~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~  433 (479)
                      .++++....++|...++||+|+||+||+++. .+|+.||||+++...   ....+.|.+|+++|.+++|+|||+|+++|.
T Consensus        52 ~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~  131 (412)
T 2vd5_A           52 RLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQ  131 (412)
T ss_dssp             HHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred             hhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEe
Confidence            3455555678899999999999999999986 468999999996432   122346999999999999999999999999


Q ss_pred             eCCeEEEEEecCCCCCHHHHHhcC-CcccchhHHHHHHHHHHhhcc
Q 011696          434 SDDRRLLIYDYVPNNTLYFHLHGK-WQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       434 ~~~~~~LV~Ey~~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      +.+..|||||||.+|+|.++|+.. ..+.+++...+..-++.++.|
T Consensus       132 ~~~~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~  177 (412)
T 2vd5_A          132 DENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDS  177 (412)
T ss_dssp             CSSEEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             eCCEEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999864 345555555555555555544

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.64  E-value=7.6e-16  Score=152.75  Aligned_cols=93  Identities=17%  Similarity=0.325  Sum_probs=78.8

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCe-------
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDR-------  437 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~-------  437 (479)
                      ++|...++||+|+||+||+|+.. +|+.||||+++.... ...++|.+|+++|++|+|+|||+++++|.+.+.       
T Consensus         6 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~   85 (332)
T 3qd2_B            6 TDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEEM   85 (332)
T ss_dssp             HHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHHH
T ss_pred             hcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhhh
Confidence            56888899999999999999874 789999999975443 345679999999999999999999999976542       


Q ss_pred             --------------------------------------------------EEEEEecCCCCCHHHHHhcCCc
Q 011696          438 --------------------------------------------------RLLIYDYVPNNTLYFHLHGKWQ  459 (479)
Q Consensus       438 --------------------------------------------------~~LV~Ey~~~GsL~~~L~~~~~  459 (479)
                                                                        .+||||||.+|+|.++++.+..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~  157 (332)
T 3qd2_B           86 DEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCS  157 (332)
T ss_dssp             HC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCS
T ss_pred             hhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccC
Confidence                                                              7899999999999999986543

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.64  E-value=3.7e-16  Score=165.41  Aligned_cols=113  Identities=22%  Similarity=0.305  Sum_probs=89.5

Q ss_pred             HhcCccccccccccCccceEEEEeCC-CCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          365 ATDGFADQNLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       365 ~~~~f~~~~~IG~G~fG~Vykg~~~~-g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      ..++|...++||+|+||+||+|++.+ ++.||||+++... ...++|++|+++|++|+|+|||+|+|+|.+.+..+||||
T Consensus       218 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E  296 (495)
T 1opk_A          218 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITE  296 (495)
T ss_dssp             CGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             CHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcc-cchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEE
Confidence            34567888999999999999999754 7889999997543 346789999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCc--ccchhHHHHHHHHHHhhcc
Q 011696          444 YVPNNTLYFHLHGKWQ--LGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       444 y~~~GsL~~~L~~~~~--~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||.+|+|.++|+....  +.+....++..-++.++.|
T Consensus       297 ~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~  333 (495)
T 1opk_A          297 FMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEY  333 (495)
T ss_dssp             CCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999986433  3333333333333444433

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.64  E-value=3.7e-16  Score=159.16  Aligned_cols=91  Identities=27%  Similarity=0.454  Sum_probs=78.9

Q ss_pred             cCccccccccccCccceEEEEeC--------CCCEEEEEEeecCCCc-chHhHHHHHHHHHhC-CCCCccceEEEEEeCC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP--------DGREVAIKQLKIGGGQ-GEREFKAEVEIISRI-HHRHLVSLVGYCISDD  436 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~--------~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~  436 (479)
                      ++|...++||+|+||+||+|++.        +++.||||+++..... ..++|.+|+++|++| +|+|||+|+|+|.+.+
T Consensus        81 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~  160 (370)
T 2psq_A           81 DKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG  160 (370)
T ss_dssp             GGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSSS
T ss_pred             HHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccCC
Confidence            56788899999999999999852        3457999999755432 345799999999999 8999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhcC
Q 011696          437 RRLLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       437 ~~~LV~Ey~~~GsL~~~L~~~  457 (479)
                      ..|||||||.+|+|.++|+.+
T Consensus       161 ~~~lv~e~~~~g~L~~~l~~~  181 (370)
T 2psq_A          161 PLYVIVEYASKGNLREYLRAR  181 (370)
T ss_dssp             SCEEEEECCTTCBHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHhh
Confidence            999999999999999999864

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.63  E-value=2.2e-16  Score=161.03  Aligned_cols=112  Identities=21%  Similarity=0.315  Sum_probs=88.5

Q ss_pred             hcCccccccccccCccceEEEEeC-CCCEEEEEEeecCCCc-chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      .++|...++||+|+||+||+|++. +|+.||||+++..... ..++|.+|+++|++++|+|||+++|+|.+.+..+||||
T Consensus       113 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e  192 (377)
T 3cbl_A          113 HEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVME  192 (377)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             hHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEE
Confidence            456778899999999999999975 6889999999754332 33579999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCC-cccchhHHHHHHHHHHhhc
Q 011696          444 YVPNNTLYFHLHGKW-QLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       444 y~~~GsL~~~L~~~~-~~~~~~~~~~~~l~~~~~~  477 (479)
                      ||.+|+|.++|+.+. .+.++...++..-++.++.
T Consensus       193 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~  227 (377)
T 3cbl_A          193 LVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGME  227 (377)
T ss_dssp             CCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            999999999997543 3444444433333333333

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.63  E-value=4.6e-16  Score=162.68  Aligned_cols=110  Identities=23%  Similarity=0.339  Sum_probs=87.2

Q ss_pred             hcCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCC-eEEEEEec
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDD-RRLLIYDY  444 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~-~~~LV~Ey  444 (479)
                      .++|...++||+|+||+||+|.+ +|+.||||+++...  ..++|++|+++|++|+|+|||+++|+|.+.+ ..+|||||
T Consensus       192 ~~~~~~~~~lG~G~fg~V~~~~~-~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~  268 (450)
T 1k9a_A          192 MKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY  268 (450)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEEC
T ss_pred             hHHeEEEeeecCcCCeeEEEEEe-cCCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEe
Confidence            45677788999999999999998 57899999997543  4568999999999999999999999998776 68999999


Q ss_pred             CCCCCHHHHHhcCCc--ccchhHHHHHHHHHHhhcc
Q 011696          445 VPNNTLYFHLHGKWQ--LGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       445 ~~~GsL~~~L~~~~~--~~~~~~~~~~~l~~~~~~~  478 (479)
                      |.+|+|.++|+.+..  +.++...++..-++.++.|
T Consensus       269 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~  304 (450)
T 1k9a_A          269 MAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEY  304 (450)
T ss_dssp             CTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999986543  3334344443334444433

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.63  E-value=2.6e-16  Score=157.31  Aligned_cols=96  Identities=24%  Similarity=0.427  Sum_probs=82.4

Q ss_pred             HHHHhcCccccccccccCccceEEEEeC------CCCEEEEEEeecCCCc-chHhHHHHHHHHHhCCCCCccceEEEEEe
Q 011696          362 LVKATDGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCIS  434 (479)
Q Consensus       362 l~~~~~~f~~~~~IG~G~fG~Vykg~~~------~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~LlG~~~~  434 (479)
                      +....++|...+.||+|+||+||+|+..      +++.||||+++..... ..++|.+|+++|++|+|+||++++|+|.+
T Consensus        42 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~  121 (343)
T 1luf_A           42 LEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAV  121 (343)
T ss_dssp             TBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS
T ss_pred             eEecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcc
Confidence            3334578888999999999999999863      3478999999755433 34579999999999999999999999999


Q ss_pred             CCeEEEEEecCCCCCHHHHHhcC
Q 011696          435 DDRRLLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       435 ~~~~~LV~Ey~~~GsL~~~L~~~  457 (479)
                      ++..+||||||.+|+|.++|+..
T Consensus       122 ~~~~~lv~e~~~~~~L~~~l~~~  144 (343)
T 1luf_A          122 GKPMCLLFEYMAYGDLNEFLRSM  144 (343)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHHT
T ss_pred             CCceEEEEecCCCCcHHHHHHHh
Confidence            99999999999999999999763

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.63  E-value=5.2e-16  Score=149.82  Aligned_cols=110  Identities=24%  Similarity=0.300  Sum_probs=88.7

Q ss_pred             hcCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      .++|...+.||+|+||+||+|.+.+++.||||+++... ...++|.+|+++|.+++|+||++++++|.+++..+|||||+
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   85 (268)
T 3sxs_A            7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGS-MSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYI   85 (268)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTT-BCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred             hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCC-CcHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEcc
Confidence            35678889999999999999998888899999997543 34567999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCc-ccchhHHHHHHHHHHhh
Q 011696          446 PNNTLYFHLHGKWQ-LGFDIRNHNNGLLILTV  476 (479)
Q Consensus       446 ~~GsL~~~L~~~~~-~~~~~~~~~~~l~~~~~  476 (479)
                      .+|+|.++++.+.. +.+....++..-++.++
T Consensus        86 ~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l  117 (268)
T 3sxs_A           86 SNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGM  117 (268)
T ss_dssp             TTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence            99999999976432 34444444333333443

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.63  E-value=6.2e-16  Score=157.12  Aligned_cols=113  Identities=18%  Similarity=0.254  Sum_probs=92.2

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      .++|...++||+|+||.||+|+. .+|+.||||+++....  .+.++|.+|+++|++|+|+|||+++++|.+++..||||
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~  107 (362)
T 2bdw_A           28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF  107 (362)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            45688889999999999999986 4688999999975443  23457999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||.+|+|++++..+..+.+....++..-++.++.|
T Consensus       108 e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~al~~  143 (362)
T 2bdw_A          108 DLVTGGELFEDIVAREFYSEADASHCIQQILESIAY  143 (362)
T ss_dssp             CCCCSCBHHHHHTTCSCCCHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999998876655555555555444555444

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.63  E-value=2.5e-16  Score=151.69  Aligned_cols=110  Identities=21%  Similarity=0.309  Sum_probs=87.6

Q ss_pred             cCccccccccccCccceEEEEeCCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeC--CeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISD--DRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~--~~~~LV~  442 (479)
                      ++|...++||+|+||+||+|++ +|+.||||+++....  ...++|.+|+++|++++|+||++++|+|.+.  +..+|||
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   88 (271)
T 3kmu_A           10 KQLNFLTKLNENHSGELWKGRW-QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLIT   88 (271)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEE
T ss_pred             HHhHHHHHhcCCCcceEEEEEE-CCeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeee
Confidence            4677889999999999999998 588999999975542  3345799999999999999999999999877  6789999


Q ss_pred             ecCCCCCHHHHHhcCCc--ccchhHHHHHHHHHHhhc
Q 011696          443 DYVPNNTLYFHLHGKWQ--LGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~--~~~~~~~~~~~l~~~~~~  477 (479)
                      |||.+|+|.++|+.+..  +.+....++..-++.++.
T Consensus        89 e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~  125 (271)
T 3kmu_A           89 HWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMA  125 (271)
T ss_dssp             ECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHH
T ss_pred             cccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999987654  333444444333444443

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.63  E-value=2.6e-16  Score=154.30  Aligned_cols=111  Identities=25%  Similarity=0.350  Sum_probs=86.9

Q ss_pred             cCccccccccccCccceEEEEe-----CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeC--CeEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-----PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISD--DRRL  439 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-----~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~--~~~~  439 (479)
                      ++|...++||+|+||+||+|++     .+|+.||||+++.......++|.+|+++|++++|+||++++|+|...  +..+
T Consensus        10 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   89 (295)
T 3ugc_A           10 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLK   89 (295)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSCE
T ss_pred             HHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCceE
Confidence            5677889999999999999985     35788999999866555567899999999999999999999999754  4589


Q ss_pred             EEEecCCCCCHHHHHhcCCc-ccchhHHHHHHHHHHhhc
Q 011696          440 LIYDYVPNNTLYFHLHGKWQ-LGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~~~-~~~~~~~~~~~l~~~~~~  477 (479)
                      ||||||.+|+|.++|+.... +.+....++..-++.++.
T Consensus        90 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~  128 (295)
T 3ugc_A           90 LIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGME  128 (295)
T ss_dssp             EEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHH
Confidence            99999999999999976432 334334344333444443

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.63  E-value=7.1e-16  Score=151.47  Aligned_cols=91  Identities=12%  Similarity=0.063  Sum_probs=79.8

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCCCc---chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ---GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~---~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||+||+|+.. +|+.||||+++.....   ..++|.+|+++|++++|+||+++++++.+++..||||
T Consensus        31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  110 (286)
T 3uqc_A           31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVA  110 (286)
T ss_dssp             TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEE
Confidence            46888899999999999999874 4889999999755432   2367999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcC
Q 011696          443 DYVPNNTLYFHLHGK  457 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~  457 (479)
                      |||++|+|.++|..+
T Consensus       111 e~~~g~~L~~~l~~~  125 (286)
T 3uqc_A          111 EWIRGGSLQEVADTS  125 (286)
T ss_dssp             ECCCEEEHHHHHTTC
T ss_pred             EecCCCCHHHHHhcC
Confidence            999999999998653

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.63  E-value=4.6e-16  Score=158.72  Aligned_cols=108  Identities=22%  Similarity=0.294  Sum_probs=80.8

Q ss_pred             cccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCC
Q 011696          370 ADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNN  448 (479)
Q Consensus       370 ~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~G  448 (479)
                      ...++||+|+||+||+|+. .+|+.||||+++.....+.++|.+|+++|++|+|+|||+++++|.+.+..+||||||.+|
T Consensus        92 ~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~  171 (373)
T 2x4f_A           92 SKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGG  171 (373)
T ss_dssp             EEEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTC
T ss_pred             ecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCC
Confidence            3457899999999999985 568999999998765556678999999999999999999999999999999999999999


Q ss_pred             CHHHHHhcCC-cccchhHHHHHHHHHHhhc
Q 011696          449 TLYFHLHGKW-QLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       449 sL~~~L~~~~-~~~~~~~~~~~~l~~~~~~  477 (479)
                      +|.++|..+. .+.+.....+..-++.++.
T Consensus       172 ~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~  201 (373)
T 2x4f_A          172 ELFDRIIDESYNLTELDTILFMKQICEGIR  201 (373)
T ss_dssp             EEHHHHHHTGGGCCHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            9999887542 3333333333333333333

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.63  E-value=7.8e-16  Score=151.36  Aligned_cols=112  Identities=23%  Similarity=0.286  Sum_probs=90.8

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCc---chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ---GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~---~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||.||+|+. .+++.||||++......   ..++|.+|+++|++++|+||++++++|.+++..+|||
T Consensus        11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   90 (294)
T 4eqm_A           11 ERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVM   90 (294)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             ccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEEE
Confidence            5688889999999999999985 46889999998644332   2357999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||.+|+|.++++.+..+.++...++..-++.++.|
T Consensus        91 e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~  126 (294)
T 4eqm_A           91 EYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKH  126 (294)
T ss_dssp             ECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999876655555555554444444443

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.63  E-value=5.9e-16  Score=156.36  Aligned_cols=111  Identities=18%  Similarity=0.208  Sum_probs=84.5

Q ss_pred             hcCccccccccccCccceEEEEeC-CCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      .++|...++||+|+||+||+|+.. +++.||||+++...  +.+.|.+|+++|++|+|+||++++++|.+.+..+|||||
T Consensus        52 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~  129 (349)
T 2w4o_A           52 SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLEL  129 (349)
T ss_dssp             GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             cCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEEe
Confidence            467888899999999999999874 57889999997532  345799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          445 VPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       445 ~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |.+|+|.+++..+..+.+....++..-++.++.|
T Consensus       130 ~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~L~~  163 (349)
T 2w4o_A          130 VTGGELFDRIVEKGYYSERDAADAVKQILEAVAY  163 (349)
T ss_dssp             CCSCBHHHHHTTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999876655555555554444444444

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.63  E-value=2.3e-16  Score=158.91  Aligned_cols=101  Identities=28%  Similarity=0.431  Sum_probs=84.9

Q ss_pred             ccHHHHHHHhcCccccccccccCccceEEEEe------CCCCEEEEEEeecCCCc-chHhHHHHHHHHHhC-CCCCccce
Q 011696          357 FTYEELVKATDGFADQNLLGEGGFGSVYKGYL------PDGREVAIKQLKIGGGQ-GEREFKAEVEIISRI-HHRHLVSL  428 (479)
Q Consensus       357 ~~~eel~~~~~~f~~~~~IG~G~fG~Vykg~~------~~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l-~HpNIv~L  428 (479)
                      +...++....++|...++||+|+||.||+|++      .+++.||||+++..... ..++|.+|+++|.+| +|+|||+|
T Consensus        12 ~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~   91 (359)
T 3vhe_A           12 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL   91 (359)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             CCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeee
Confidence            45566666778899999999999999999974      23578999999765433 345799999999999 89999999


Q ss_pred             EEEEEeCCe-EEEEEecCCCCCHHHHHhcC
Q 011696          429 VGYCISDDR-RLLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       429 lG~~~~~~~-~~LV~Ey~~~GsL~~~L~~~  457 (479)
                      +|+|.+.+. .+||||||.+|+|.++|+.+
T Consensus        92 ~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~  121 (359)
T 3vhe_A           92 LGACTKPGGPLMVIVEFCKFGNLSTYLRSK  121 (359)
T ss_dssp             EEEECSTTSCCEEEEECCTTEEHHHHHHTT
T ss_pred             eeeeecCCCceEEEEEecCCCcHHHHHHhc
Confidence            999988655 88999999999999999864

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.63  E-value=5.6e-16  Score=154.65  Aligned_cols=112  Identities=21%  Similarity=0.238  Sum_probs=92.9

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||+||+++. .+|+.||||+++...   ....+.+.+|+.+|++++|+||++++++|.+.+..||||
T Consensus         6 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~   85 (318)
T 1fot_A            6 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM   85 (318)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEEE
Confidence            5688889999999999999986 468999999997432   234567899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||.+|+|.++|+.+..+.++....+..-++.++.|
T Consensus        86 e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~  121 (318)
T 1fot_A           86 DYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEY  121 (318)
T ss_dssp             CCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999877666666665555555555544

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.62  E-value=4.5e-16  Score=162.88  Aligned_cols=94  Identities=22%  Similarity=0.387  Sum_probs=82.2

Q ss_pred             HHHHhcCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEE
Q 011696          362 LVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       362 l~~~~~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      +....++|...++||+|+||+||+|.+.+++.||||+++... ...++|++|+++|++|+|+|||+|+|+|. .+..+||
T Consensus       183 ~~i~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv  260 (454)
T 1qcf_A          183 WEIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYII  260 (454)
T ss_dssp             SBCCGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEE
T ss_pred             eeechHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEE
Confidence            344456788889999999999999999888899999997543 45678999999999999999999999986 6678999


Q ss_pred             EecCCCCCHHHHHhcC
Q 011696          442 YDYVPNNTLYFHLHGK  457 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~  457 (479)
                      ||||.+|+|.++|+.+
T Consensus       261 ~e~~~~g~L~~~l~~~  276 (454)
T 1qcf_A          261 TEFMAKGSLLDFLKSD  276 (454)
T ss_dssp             ECCCTTCBHHHHHHSH
T ss_pred             EeecCCCcHHHHHHhc
Confidence            9999999999999854

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.62  E-value=1e-15  Score=148.82  Aligned_cols=112  Identities=25%  Similarity=0.255  Sum_probs=91.1

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCCC------cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG------QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL  439 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~------~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~  439 (479)
                      ++|...++||+|+||.||+++.. +|+.||||.++....      ...++|.+|+++|++|+|+||++++++|.+.+..+
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   84 (283)
T 3bhy_A            5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV   84 (283)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence            45888899999999999999874 689999999975432      13567999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          440 LIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||||+.+|+|.+++..+..+.++...++..-++.++.|
T Consensus        85 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~  123 (283)
T 3bhy_A           85 LILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHY  123 (283)
T ss_dssp             EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEeecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999876555555555554444444443

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.62  E-value=7.5e-16  Score=151.74  Aligned_cols=111  Identities=18%  Similarity=0.240  Sum_probs=87.3

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      ++|...++||+|+||+||+++. .+|+.||||+++.......++|.+|+++|++++|+||++++++|.+.+..+||||||
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   88 (304)
T 2jam_A            9 KTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLV   88 (304)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             ccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEcC
Confidence            5688889999999999999986 468999999998655555567999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCcccchhHHHHHHHHHHhhc
Q 011696          446 PNNTLYFHLHGKWQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       446 ~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~  477 (479)
                      .+|+|.+++..+..+.++...++..-++.++.
T Consensus        89 ~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~  120 (304)
T 2jam_A           89 SGGELFDRILERGVYTEKDASLVIQQVLSAVK  120 (304)
T ss_dssp             CSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            99999999876555444444444444444443

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.62  E-value=7.8e-16  Score=157.95  Aligned_cols=112  Identities=18%  Similarity=0.208  Sum_probs=91.6

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      ++|...++||+|+||+||+|+. .+|+.||+|.++.....+..+|.+|+++|++|+|+|||+++++|.+.+..+||||||
T Consensus        51 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~~  130 (387)
T 1kob_A           51 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFL  130 (387)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECC
T ss_pred             cceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEcC
Confidence            5688889999999999999986 468899999997655555668999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCC-cccchhHHHHHHHHHHhhcc
Q 011696          446 PNNTLYFHLHGKW-QLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       446 ~~GsL~~~L~~~~-~~~~~~~~~~~~l~~~~~~~  478 (479)
                      .+|+|.+++..+. .+.+.....+..-++.++.|
T Consensus       131 ~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~  164 (387)
T 1kob_A          131 SGGELFDRIAAEDYKMSEAEVINYMRQACEGLKH  164 (387)
T ss_dssp             CCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999987543 44444444444444444444

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.62  E-value=9.3e-16  Score=152.27  Aligned_cols=112  Identities=19%  Similarity=0.215  Sum_probs=87.8

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCC-CcchHhHHHHHHHHHhCCCCCccceEEEEEeCC--eEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDD--RRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~--~~~LV~  442 (479)
                      ++|...++||+|+||+||+|+.. +|+.||||+++... ....+.|.+|+++|++++|+||++++++|...+  ..+|||
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   88 (319)
T 4euu_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM   88 (319)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred             CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEE
Confidence            56788899999999999999864 48899999997543 234567899999999999999999999998766  679999


Q ss_pred             ecCCCCCHHHHHhcCCc---ccchhHHHHHHHHHHhhcc
Q 011696          443 DYVPNNTLYFHLHGKWQ---LGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~---~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||.+|+|.++|+....   +.+....++..-++.++.|
T Consensus        89 e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~  127 (319)
T 4euu_A           89 EFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNH  127 (319)
T ss_dssp             ECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999986433   4444444444444444443

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.62  E-value=3.9e-16  Score=166.82  Aligned_cols=112  Identities=22%  Similarity=0.337  Sum_probs=88.1

Q ss_pred             HhcCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          365 ATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       365 ~~~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      ..++|...++||+|+||+||+|++.+++.||||+++... ...++|++|+++|++|+|+|||+|+|+|.+ +..||||||
T Consensus       265 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~e~  342 (535)
T 2h8h_A          265 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEY  342 (535)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECC
T ss_pred             chhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEeeeh
Confidence            345677788999999999999999878889999998543 345689999999999999999999999965 678999999


Q ss_pred             CCCCCHHHHHhcC--CcccchhHHHHHHHHHHhhcc
Q 011696          445 VPNNTLYFHLHGK--WQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       445 ~~~GsL~~~L~~~--~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |.+|+|.++|+.+  ..+.+....++..-++.++.|
T Consensus       343 ~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~  378 (535)
T 2h8h_A          343 MSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAY  378 (535)
T ss_dssp             CTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999753  223444444444444444433

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.62  E-value=4.3e-16  Score=156.00  Aligned_cols=94  Identities=18%  Similarity=0.295  Sum_probs=81.1

Q ss_pred             HHHHhcCccccccccccCccceEEEEe-CCCCEEEEEEeecC-----CCcchHhHHHHHHHHHhCCCCCccceEEEEEeC
Q 011696          362 LVKATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIG-----GGQGEREFKAEVEIISRIHHRHLVSLVGYCISD  435 (479)
Q Consensus       362 l~~~~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~-----~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~  435 (479)
                      +....++|...++||+|+||+||+|+. .+++.||||+++..     .....++|.+|+++|++|+|+|||+|+|+|.+.
T Consensus        21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~  100 (345)
T 3hko_A           21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDE  100 (345)
T ss_dssp             HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccC
Confidence            344556788899999999999999986 56789999998643     234456899999999999999999999999999


Q ss_pred             CeEEEEEecCCCCCHHHHHh
Q 011696          436 DRRLLIYDYVPNNTLYFHLH  455 (479)
Q Consensus       436 ~~~~LV~Ey~~~GsL~~~L~  455 (479)
                      +..+||||||.+|+|.++|+
T Consensus       101 ~~~~lv~e~~~gg~L~~~l~  120 (345)
T 3hko_A          101 QYICLVMELCHGGHLLDKLN  120 (345)
T ss_dssp             SEEEEEEECCCSCBHHHHEE
T ss_pred             CeEEEEEeCCCCCcHHHHHH
Confidence            99999999999999999985

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.62  E-value=1.3e-15  Score=147.81  Aligned_cols=112  Identities=22%  Similarity=0.177  Sum_probs=89.8

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCC--CcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG--GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||+||+|+.. +|+.||||+++...  .....++++|+.++.++ +|+||++++|+|.+.+..+|||
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv~   90 (289)
T 1x8b_A           11 TEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQN   90 (289)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEEE
T ss_pred             chhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEE
Confidence            56888899999999999999864 78999999997543  33456799999999999 9999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcC----CcccchhHHHHHHHHHHhhcc
Q 011696          443 DYVPNNTLYFHLHGK----WQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~----~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||++|+|.++|+..    ..+.+....++..-++.++.|
T Consensus        91 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~  130 (289)
T 1x8b_A           91 EYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRY  130 (289)
T ss_dssp             ECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             EecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999764    234444444444444444433

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.62  E-value=1.2e-15  Score=152.16  Aligned_cols=111  Identities=16%  Similarity=0.220  Sum_probs=89.7

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      ++|...+.||+|+||+||+|+. .+|+.||+|.++.. ..+.+.|.+|+++|++++|+||++++++|.+.+..+||||||
T Consensus         5 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~-~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~   83 (321)
T 1tki_A            5 EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK-GTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFI   83 (321)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC-THHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             hceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecC-cccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEeC
Confidence            5788889999999999999986 45788999998743 344567999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCC-cccchhHHHHHHHHHHhhcc
Q 011696          446 PNNTLYFHLHGKW-QLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       446 ~~GsL~~~L~~~~-~~~~~~~~~~~~l~~~~~~~  478 (479)
                      .+|+|.++++.+. .+.++...++..-++.++.|
T Consensus        84 ~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~  117 (321)
T 1tki_A           84 SGLDIFERINTSAFELNEREIVSYVHQVCEALQF  117 (321)
T ss_dssp             CCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999997643 44444444444444444443

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.62  E-value=7.5e-16  Score=155.56  Aligned_cols=112  Identities=18%  Similarity=0.157  Sum_probs=92.2

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCCCc-chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      ++|...++||+|+||+||+|... +|+.||||+++..... ..+.|.+|+++|++++|+||++++++|.+++..+|||||
T Consensus        33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  112 (360)
T 3eqc_A           33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEH  112 (360)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEEC
Confidence            56788889999999999999864 6889999999765433 345799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          445 VPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       445 ~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |.+|+|.++++.+..+.+....++...++.++.|
T Consensus       113 ~~~~~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~  146 (360)
T 3eqc_A          113 MDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTY  146 (360)
T ss_dssp             CTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999876655555555555555555444

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.61  E-value=4.6e-16  Score=157.15  Aligned_cols=112  Identities=19%  Similarity=0.342  Sum_probs=87.7

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCC-----CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG-----GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~-----~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~L  440 (479)
                      +.|...++||+|+||+||+|+. .+|+.||||+++...     ....++|.+|+++|++|+|+|||+++++|.+++..||
T Consensus        24 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~l  103 (351)
T 3c0i_A           24 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYM  103 (351)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             cceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence            4688889999999999999985 468999999986321     2245679999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCC----cccchhHHHHHHHHHHhhcc
Q 011696          441 IYDYVPNNTLYFHLHGKW----QLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~~----~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||||.+|+|.+++..+.    .+.+....++..-++.++.|
T Consensus       104 v~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~  145 (351)
T 3c0i_A          104 VFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRY  145 (351)
T ss_dssp             EEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999988876432    23444444444444444443

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.61  E-value=1.1e-15  Score=156.16  Aligned_cols=112  Identities=9%  Similarity=0.114  Sum_probs=89.3

Q ss_pred             cCcccccccccc--CccceEEEEeC-CCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEE
Q 011696          367 DGFADQNLLGEG--GFGSVYKGYLP-DGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       367 ~~f~~~~~IG~G--~fG~Vykg~~~-~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      ++|...++||+|  +||+||+|+.. +|+.||||+++....  ...+.|.+|+++|++++|+|||+|+++|.+++..+||
T Consensus        25 ~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv  104 (389)
T 3gni_B           25 GCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVV  104 (389)
T ss_dssp             GGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             CcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEEE
Confidence            568888999999  99999999964 689999999975432  2335688999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCC--cccchhHHHHHHHHHHhhcc
Q 011696          442 YDYVPNNTLYFHLHGKW--QLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~~--~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||||.+|+|.++++.+.  .+.+....++..-++.++.|
T Consensus       105 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~  143 (389)
T 3gni_B          105 TSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDY  143 (389)
T ss_dssp             EECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999998653  33344444444444444444

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.61  E-value=8.1e-16  Score=155.38  Aligned_cols=116  Identities=19%  Similarity=0.310  Sum_probs=93.8

Q ss_pred             HHhcCccccccccccCccceEEEEeC-CCCEEEEEEeecCC---CcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeE
Q 011696          364 KATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRR  438 (479)
Q Consensus       364 ~~~~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~  438 (479)
                      ...++|...++||+|+||+||+|+.. +|+.||||+++...   ....+.+.+|+++|.++ +|+||++++++|.+.+..
T Consensus        14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~   93 (345)
T 1xjd_A           14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENL   93 (345)
T ss_dssp             --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred             CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEE
Confidence            34578999999999999999999864 58899999997432   23455788999999987 999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          439 LLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      |||||||.+|+|.++|+....+.++....+..-++.++.||
T Consensus        94 ~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~L  134 (345)
T 1xjd_A           94 FFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFL  134 (345)
T ss_dssp             EEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998766666666666655555555543

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.61  E-value=8.2e-16  Score=157.67  Aligned_cols=113  Identities=19%  Similarity=0.240  Sum_probs=93.5

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||+||++.. .+|+.||||+++...   ....+.|.+|+++|++++|+|||+|+++|.+.+..||||
T Consensus        15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~   94 (384)
T 4fr4_A           15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVV   94 (384)
T ss_dssp             GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence            5688889999999999999986 457899999996432   334567999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      |||.+|+|.++|+.+..+.++....+..-++.++.||
T Consensus        95 e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~L  131 (384)
T 4fr4_A           95 DLLLGGDLRYHLQQNVHFKEETVKLFICELVMALDYL  131 (384)
T ss_dssp             CCCTTEEHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999998776666666666655555555543

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.61  E-value=1.2e-15  Score=149.08  Aligned_cols=112  Identities=16%  Similarity=0.181  Sum_probs=89.4

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCC-CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      ++|...++||+|+||+||++.. .+|+.||||+++... ....++|.+|+++|++++|+||++++++|.+.+..+|||||
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  101 (285)
T 3is5_A           22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMET  101 (285)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEe
Confidence            4578889999999999999986 468899999997543 34457899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcC----CcccchhHHHHHHHHHHhhcc
Q 011696          445 VPNNTLYFHLHGK----WQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       445 ~~~GsL~~~L~~~----~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |.+|+|.+++...    ..+.+....++..-++.++.|
T Consensus       102 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~  139 (285)
T 3is5_A          102 CEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAY  139 (285)
T ss_dssp             CSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHH
Confidence            9999999988643    334444444444444444443

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.61  E-value=7.7e-16  Score=155.98  Aligned_cols=114  Identities=24%  Similarity=0.324  Sum_probs=93.5

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~L  440 (479)
                      .++|...++||+|+||+||+|+. .+|+.||||+++...   ....+.+.+|+++|.++ +|+|||+|+++|.+.+..||
T Consensus        22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l  101 (353)
T 3txo_A           22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFF  101 (353)
T ss_dssp             -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred             hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEE
Confidence            46789999999999999999986 458899999997432   23345689999999998 79999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          441 IYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      |||||.+|+|.++|+.+..+.++....+..-++.++.||
T Consensus       102 v~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~L  140 (353)
T 3txo_A          102 VMEFVNGGDLMFHIQKSRRFDEARARFYAAEIISALMFL  140 (353)
T ss_dssp             EEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999998766666666666666566655543

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.61  E-value=8.3e-16  Score=156.33  Aligned_cols=91  Identities=27%  Similarity=0.435  Sum_probs=79.1

Q ss_pred             cCccccccccccCccceEEEEeC------CCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL  439 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~------~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~  439 (479)
                      ++|...++||+|+||+||+|++.      +++.||||+++.... ....+|++|+++|++|+|+|||+|+|+|.+.+..+
T Consensus        71 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~  150 (367)
T 3l9p_A           71 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRF  150 (367)
T ss_dssp             GGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred             hHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCE
Confidence            56788899999999999999853      356899999975433 34457999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcC
Q 011696          440 LIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~  457 (479)
                      ||||||.+|+|.++|+..
T Consensus       151 lv~e~~~~g~L~~~l~~~  168 (367)
T 3l9p_A          151 ILLELMAGGDLKSFLRET  168 (367)
T ss_dssp             EEEECCTTEEHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHhh
Confidence            999999999999999864

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.61  E-value=1.1e-15  Score=154.22  Aligned_cols=113  Identities=20%  Similarity=0.282  Sum_probs=92.2

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCCC---cchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG---QGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      ++|...++||+|+||+||+++.. +|+.||||+++....   ...+.+.+|+++|.++ +|+|||+|+++|.+.+..|||
T Consensus         9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv   88 (345)
T 3a8x_A            9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV   88 (345)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEE
Confidence            56888899999999999999864 578999999975432   2234689999999998 899999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          442 YDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      ||||.+|+|.++|..+..+.++....+..-++.++.||
T Consensus        89 ~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~L  126 (345)
T 3a8x_A           89 IEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYL  126 (345)
T ss_dssp             ECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             EeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999998766666666666655555555543

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.61  E-value=1.5e-15  Score=150.95  Aligned_cols=112  Identities=23%  Similarity=0.229  Sum_probs=91.0

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCc------chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ------GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL  439 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~------~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~  439 (479)
                      ++|...+.||+|+||.||+|+. .+|+.||||.++.....      ..++|.+|+++|++++|+||++++++|.+.+..+
T Consensus        12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   91 (321)
T 2a2a_A           12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDVV   91 (321)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             ccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEE
Confidence            4578889999999999999986 46889999999754321      3567999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          440 LIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||||||.+|+|.+++..+..+.++...++..-++.++.|
T Consensus        92 lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~  130 (321)
T 2a2a_A           92 LILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNY  130 (321)
T ss_dssp             EEECCCCSCBHHHHHHTCSCEEHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999876655555555554444444443

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.61  E-value=1.1e-15  Score=154.64  Aligned_cols=112  Identities=21%  Similarity=0.231  Sum_probs=92.4

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||+||+++. .+|+.||||+++...   ....+++.+|+++|++++|+||++++++|.+.+..||||
T Consensus        41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  120 (350)
T 1rdq_E           41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM  120 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEE
Confidence            5678889999999999999986 468999999996432   234567999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||.+|+|.++|+....+.++....+..-++.++.|
T Consensus       121 e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~  156 (350)
T 1rdq_E          121 EYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEY  156 (350)
T ss_dssp             ECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999876666566555555555555544

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.61  E-value=1.3e-15  Score=146.66  Aligned_cols=109  Identities=23%  Similarity=0.338  Sum_probs=87.9

Q ss_pred             cCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~  446 (479)
                      ++|...++||+|+||.||+|...+++.||||+++... ...++|.+|+++|++++|+||++++|+|.+.+..+|||||+.
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   86 (267)
T 3t9t_A            8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFME   86 (267)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTT-BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCCT
T ss_pred             hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCCC
Confidence            5677889999999999999998888899999997543 335689999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcCC-cccchhHHHHHHHHHHhh
Q 011696          447 NNTLYFHLHGKW-QLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       447 ~GsL~~~L~~~~-~~~~~~~~~~~~l~~~~~  476 (479)
                      +|+|.++++.+. .+.++...++..-++.++
T Consensus        87 ~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l  117 (267)
T 3t9t_A           87 HGCLSDYLRTQRGLFAAETLLGMCLDVCEGM  117 (267)
T ss_dssp             TCBHHHHHHHTTTCCCHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHhhCcccCCHHHHHHHHHHHHHHH
Confidence            999999997643 333433333333333333

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.61  E-value=9.1e-16  Score=160.48  Aligned_cols=111  Identities=23%  Similarity=0.349  Sum_probs=87.4

Q ss_pred             HhcCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          365 ATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       365 ~~~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      ..++|...++||+|+||+||+|.+.+++.||||+++... ...++|.+|+++|++|+|+|||+++|+|.+ +..+|||||
T Consensus       182 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e~  259 (452)
T 1fmk_A          182 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEY  259 (452)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECC
T ss_pred             ChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEehh
Confidence            346677888999999999999999877889999997543 345689999999999999999999999965 678999999


Q ss_pred             CCCCCHHHHHhcC--CcccchhHHHHHHHHHHhhc
Q 011696          445 VPNNTLYFHLHGK--WQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       445 ~~~GsL~~~L~~~--~~~~~~~~~~~~~l~~~~~~  477 (479)
                      |.+|+|.++|+.+  ..+.+....++..-++.++.
T Consensus       260 ~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~  294 (452)
T 1fmk_A          260 MSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMA  294 (452)
T ss_dssp             CTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             hcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999753  22334444444333444433

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.61  E-value=1.3e-15  Score=152.64  Aligned_cols=112  Identities=15%  Similarity=0.180  Sum_probs=90.6

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCCC---cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||+||+++.. +++.||+|.+.....   ...++|.+|+++|++++|+||++++|+|.+.+..+|||
T Consensus        41 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  120 (335)
T 2owb_A           41 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVL  120 (335)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             CceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEE
Confidence            56888899999999999999864 578899999864422   23457999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||.+|+|.+++..+..+.++...++..-++.++.|
T Consensus       121 e~~~~~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~  156 (335)
T 2owb_A          121 ELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQY  156 (335)
T ss_dssp             CCCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCCCHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999998766555555555555555554444

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.60  E-value=2.5e-15  Score=146.83  Aligned_cols=91  Identities=23%  Similarity=0.442  Sum_probs=78.8

Q ss_pred             CccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCC
Q 011696          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~  446 (479)
                      +|....+||+|+||.||+|+. .+++.||||+++.......+.|.+|+++|++++|+||++++|+|.+.+..+|||||+.
T Consensus        23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~  102 (295)
T 2clq_A           23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVP  102 (295)
T ss_dssp             TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred             CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeCC
Confidence            345556899999999999985 5688999999987666666789999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcCC
Q 011696          447 NNTLYFHLHGKW  458 (479)
Q Consensus       447 ~GsL~~~L~~~~  458 (479)
                      +|+|.++++.++
T Consensus       103 ~~~L~~~l~~~~  114 (295)
T 2clq_A          103 GGSLSALLRSKW  114 (295)
T ss_dssp             EEEHHHHHHHTT
T ss_pred             CCCHHHHHHhhc
Confidence            999999998653

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.60  E-value=1.1e-15  Score=157.27  Aligned_cols=114  Identities=19%  Similarity=0.285  Sum_probs=92.7

Q ss_pred             hcCccccccccccCccceEEEEeC-CCCEEEEEEeecCC---CcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~L  440 (479)
                      .++|...++||+|+||+||+++.. +++.||||+++...   ....+.+.+|+++|.++ +|+|||+|+++|.+.+..||
T Consensus        51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l  130 (396)
T 4dc2_A           51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF  130 (396)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred             hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence            357888899999999999999864 57889999997543   22334689999999987 89999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          441 IYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      |||||.+|+|.++|+.+..+.++....+..-++.++.||
T Consensus       131 V~E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~L  169 (396)
T 4dc2_A          131 VIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYL  169 (396)
T ss_dssp             EEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEcCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999998776666666666666666666553

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.60  E-value=2.2e-15  Score=147.78  Aligned_cols=111  Identities=19%  Similarity=0.293  Sum_probs=86.4

Q ss_pred             hcCccccccccccCccceEEEEeC-CCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      .++|...+.||+|+||+||+|+.. +|+.||||.++.......++|.+|+++|++++|+||++++|+|.+++..+|||||
T Consensus        18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   97 (302)
T 2j7t_A           18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEF   97 (302)
T ss_dssp             GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEEC
T ss_pred             ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEEe
Confidence            366888899999999999999974 5889999999866666677899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhc-CCcccchhHHHHHHHHHHhh
Q 011696          445 VPNNTLYFHLHG-KWQLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       445 ~~~GsL~~~L~~-~~~~~~~~~~~~~~l~~~~~  476 (479)
                      |.+|+|.+++.. +..+.+.....+..-++.++
T Consensus        98 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l  130 (302)
T 2j7t_A           98 CPGGAVDAIMLELDRGLTEPQIQVVCRQMLEAL  130 (302)
T ss_dssp             CTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence            999999998875 23344444444433333333

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.60  E-value=5e-16  Score=151.38  Aligned_cols=94  Identities=27%  Similarity=0.416  Sum_probs=82.0

Q ss_pred             HhcCccccccccccCccceEEEEeC-CCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          365 ATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       365 ~~~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      ..++|...++||+|+||+||+|+.. +++.||||+++.. ....++|.+|+++|++++|+||++++++|.+++..+||||
T Consensus        11 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e   89 (288)
T 3kfa_A           11 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITE   89 (288)
T ss_dssp             CGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSC-STHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred             cccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcC-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEE
Confidence            4467888899999999999999874 4788999999743 3445789999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCc
Q 011696          444 YVPNNTLYFHLHGKWQ  459 (479)
Q Consensus       444 y~~~GsL~~~L~~~~~  459 (479)
                      |+.+|+|.++++....
T Consensus        90 ~~~~~~L~~~~~~~~~  105 (288)
T 3kfa_A           90 FMTYGNLLDYLRECNR  105 (288)
T ss_dssp             CCTTEEHHHHHHHCCT
T ss_pred             cCCCCcHHHHHHhccc
Confidence            9999999999986433

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.60  E-value=1.5e-15  Score=151.32  Aligned_cols=112  Identities=24%  Similarity=0.324  Sum_probs=88.3

Q ss_pred             cCccccccccccCccceEEEEe-----CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEe--CCeEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-----PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS--DDRRL  439 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-----~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~--~~~~~  439 (479)
                      ++|...++||+|+||.||+|++     .+++.||||+++.......++|.+|+++|++|+|+||++++|+|..  .+..+
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~  102 (327)
T 3lxl_A           23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLR  102 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEE
T ss_pred             hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEE
Confidence            5678889999999999999984     3577899999986655556789999999999999999999999984  45688


Q ss_pred             EEEecCCCCCHHHHHhcC-CcccchhHHHHHHHHHHhhcc
Q 011696          440 LIYDYVPNNTLYFHLHGK-WQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||||||.+|+|.++|+.. ..+.+....++..-++.++.|
T Consensus       103 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~  142 (327)
T 3lxl_A          103 LVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEY  142 (327)
T ss_dssp             EEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999763 334444444444444444433

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.60  E-value=1.7e-15  Score=146.59  Aligned_cols=113  Identities=18%  Similarity=0.224  Sum_probs=91.5

Q ss_pred             hcCccccccccccCccceEEEEeC-CCCEEEEEEeecCC-CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      .++|...++||+|+||+||+|+.. +|+.||||+++... ....++|.+|+++|++++|+||++++|+|.+.+..+||||
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   85 (276)
T 2yex_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE   85 (276)
T ss_dssp             HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEE
Confidence            356888899999999999999864 68899999997543 3345679999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          444 YVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       444 y~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |+.+|+|.++++.+..+.+....++..-++.++.|
T Consensus        86 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~  120 (276)
T 2yex_A           86 YCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVY  120 (276)
T ss_dssp             CCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999866555555544444444444433

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.60  E-value=4.6e-16  Score=154.05  Aligned_cols=112  Identities=19%  Similarity=0.184  Sum_probs=89.1

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcc---hHhHHHHHHHHHhCCCCCccceEEEEEeCCe----E
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQG---EREFKAEVEIISRIHHRHLVSLVGYCISDDR----R  438 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~---~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~----~  438 (479)
                      ++|...++||+|+||+||+++. .+|+.||||+++.....+   .++|.+|+++|++++|+||++++++|...+.    .
T Consensus        12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~   91 (311)
T 3ork_A           12 DRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLP   91 (311)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEEE
T ss_pred             CcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCccc
Confidence            5688889999999999999985 578899999997543322   3479999999999999999999999886553    3


Q ss_pred             EEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          439 LLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||||||.+|+|.++++.+..+.++...++..-++.++.|
T Consensus        92 ~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~  131 (311)
T 3ork_A           92 YIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNF  131 (311)
T ss_dssp             EEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            8999999999999999876655555555555544554444

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.60  E-value=1.2e-15  Score=147.25  Aligned_cols=109  Identities=23%  Similarity=0.423  Sum_probs=82.4

Q ss_pred             cCccccccccccCccceEEEEeCCCCEEEEEEeecCCC----cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGG----QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~----~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||.||+|++ +|+.||||+++....    ...++|.+|+++|++++|+||++++|+|.+++..+|||
T Consensus         7 ~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   85 (271)
T 3dtc_A            7 AELTLEEIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVM   85 (271)
T ss_dssp             TSEEEEEEEEEETTEEEEEEEE-TTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEE
T ss_pred             hheeeeeeeccCCCeEEEEEEE-cCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEE
Confidence            5678889999999999999997 588999999864432    23467999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhc
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~  477 (479)
                      ||+.+|+|.++++++ .+.+....++..-++.++.
T Consensus        86 e~~~~~~L~~~~~~~-~~~~~~~~~i~~~l~~~l~  119 (271)
T 3dtc_A           86 EFARGGPLNRVLSGK-RIPPDILVNWAVQIARGMN  119 (271)
T ss_dssp             ECCTTEEHHHHHTSS-CCCHHHHHHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHhhcC-CCCHHHHHHHHHHHHHHHH
Confidence            999999999998754 3334444444333344333

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.60  E-value=1e-15  Score=152.55  Aligned_cols=110  Identities=17%  Similarity=0.197  Sum_probs=85.3

Q ss_pred             hcCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCC----eEEEE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDD----RRLLI  441 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~----~~~LV  441 (479)
                      .++|...++||+|+||+||+|++ .|+.||||+++... ....++.+|+.+|++|+|+|||+|+|+|.+.+    ..+||
T Consensus        23 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv  100 (322)
T 3soc_A           23 SMPLQLLEVKARGRFGCVWKAQL-LNEYVAVKIFPIQD-KQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLI  100 (322)
T ss_dssp             TEEEEEEEEEECSTTCEEEEEEE-TTEEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred             hhhchhhheecccCceEEEEEEE-CCCEEEEEEeecCc-hHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEE
Confidence            36788889999999999999987 57899999996432 23346778999999999999999999998754    36899


Q ss_pred             EecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          442 YDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||||.+|+|.++|+.+. +.+....++..-++.++.|
T Consensus       101 ~e~~~~g~L~~~l~~~~-~~~~~~~~i~~qi~~al~~  136 (322)
T 3soc_A          101 TAFHEKGSLSDFLKANV-VSWNELCHIAETMARGLAY  136 (322)
T ss_dssp             EECCTTCBHHHHHHHCC-BCHHHHHHHHHHHHHHHHH
T ss_pred             EecCCCCCHHHHHHhcC-CCHHHHHHHHHHHHHHHHH
Confidence            99999999999997643 4444444444444444443

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.60  E-value=2.2e-15  Score=145.95  Aligned_cols=111  Identities=19%  Similarity=0.221  Sum_probs=89.7

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||.||+|+.. +|+.||||+++...   ....++|.+|+++|++++|+||++++++|.+.+..+|||
T Consensus        11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   90 (276)
T 2h6d_A           11 GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVM   90 (276)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             ccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEEE
Confidence            56888899999999999999864 68999999996432   233457999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhc
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~  477 (479)
                      ||+.+|+|.+++..+..+.+....++..-++.++.
T Consensus        91 e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~  125 (276)
T 2h6d_A           91 EYVSGGELFDYICKHGRVEEMEARRLFQQILSAVD  125 (276)
T ss_dssp             ECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHH
T ss_pred             eccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999976555544444444444444443

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.60  E-value=1.4e-15  Score=149.91  Aligned_cols=93  Identities=29%  Similarity=0.445  Sum_probs=80.2

Q ss_pred             hcCccccccccccCccceEEEEe------CCCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL------PDGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRR  438 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~------~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~  438 (479)
                      .++|...++||+|+||.||+|+.      .+++.||||+++.... ...++|.+|+++|++|+|+||++++|+|.+.+..
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~  101 (314)
T 2ivs_A           22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPL  101 (314)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSC
T ss_pred             hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCce
Confidence            45678889999999999999975      2357899999975443 3346799999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCC
Q 011696          439 LLIYDYVPNNTLYFHLHGKW  458 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~~  458 (479)
                      +|||||+.+|+|.++++...
T Consensus       102 ~lv~e~~~~~~L~~~l~~~~  121 (314)
T 2ivs_A          102 LLIVEYAKYGSLRGFLRESR  121 (314)
T ss_dssp             EEEEECCTTCBHHHHHHHTT
T ss_pred             EEEEeecCCCCHHHHHHHHh
Confidence            99999999999999998643

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.60  E-value=2.6e-15  Score=148.05  Aligned_cols=112  Identities=19%  Similarity=0.247  Sum_probs=90.7

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCCCcc--hHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQG--EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~~--~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      ++|...++||+|+||+||+|+.. +|+.||||++.......  .+.|.+|+++|++++|+||++++++|.+.+..+||||
T Consensus         3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (311)
T 4agu_A            3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFE   82 (311)
T ss_dssp             CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEE
Confidence            56888899999999999999864 58999999986544322  4568999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          444 YVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       444 y~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||.+|+|.++++.+..+.+....++..-++.++.|
T Consensus        83 ~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~l~~  117 (311)
T 4agu_A           83 YCDHTVLHELDRYQRGVPEHLVKSITWQTLQAVNF  117 (311)
T ss_dssp             CCSEEHHHHHHHTSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             eCCCchHHHHHhhhcCCCHHHHHHHHHHHHHHHHH
Confidence            99999999988766655555555555444444443

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.60  E-value=2.1e-15  Score=147.75  Aligned_cols=112  Identities=15%  Similarity=0.180  Sum_probs=89.9

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCCC---cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||+||++... +++.||+|.+.....   ...++|.+|+++|++++|+||++++|+|.+++..+|||
T Consensus        15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   94 (294)
T 2rku_A           15 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVL   94 (294)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEEE
Confidence            56778899999999999999864 578899999864432   23457999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||.+|+|.+++..+..+.++...++..-++.++.|
T Consensus        95 e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~  130 (294)
T 2rku_A           95 ELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQY  130 (294)
T ss_dssp             ECCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999988765555555555554444444443

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.60  E-value=1.4e-15  Score=150.48  Aligned_cols=113  Identities=21%  Similarity=0.221  Sum_probs=87.1

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEe----CCeEEE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS----DDRRLL  440 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~----~~~~~L  440 (479)
                      .++|...++||+|+||.||+++. .+|+.||||+++.......++|.+|+++|++++|+||++++|+|..    .+..+|
T Consensus        28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l  107 (317)
T 2buj_A           28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWL  107 (317)
T ss_dssp             TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEE
T ss_pred             CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEE
Confidence            36788899999999999999985 6789999999976655566789999999999999999999999973    346789


Q ss_pred             EEecCCCCCHHHHHhc----CCcccchhHHHHHHHHHHhhcc
Q 011696          441 IYDYVPNNTLYFHLHG----KWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~----~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||||.+|+|.++++.    +..+.+....++..-++.++.|
T Consensus       108 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~  149 (317)
T 2buj_A          108 LLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEA  149 (317)
T ss_dssp             EEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999875    2334444444444444444433

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.60  E-value=2.2e-15  Score=146.47  Aligned_cols=113  Identities=18%  Similarity=0.254  Sum_probs=91.0

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      .++|...++||+|+||.||+|.. .+|+.||||+++....  ...++|.+|+++|++++|+||++++++|.+.+..+|||
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   84 (284)
T 3kk8_A            5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF   84 (284)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence            36788889999999999999986 4588999999975432  33457999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||.+|+|.+++..+..+.+....++..-++.++.|
T Consensus        85 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~  120 (284)
T 3kk8_A           85 DLVTGGELFEDIVAREFYSEADASHCIQQILESIAY  120 (284)
T ss_dssp             CCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999888776555555555444444444443

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.60  E-value=6.3e-16  Score=150.10  Aligned_cols=109  Identities=25%  Similarity=0.386  Sum_probs=86.0

Q ss_pred             hcCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      .++|...+.||+|+||.||+|.+.+++.||||+++... ...++|.+|+++|++|+|+||++++|+|. ++..+|||||+
T Consensus        12 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~   89 (279)
T 1qpc_A           12 RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIITEYM   89 (279)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEECC
T ss_pred             HHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCc-ccHHHHHHHHHHHHhCCCcCcceEEEEEc-CCCcEEEEecC
Confidence            45688889999999999999998888899999997543 34568999999999999999999999986 55689999999


Q ss_pred             CCCCHHHHHhcCC--cccchhHHHHHHHHHHhh
Q 011696          446 PNNTLYFHLHGKW--QLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       446 ~~GsL~~~L~~~~--~~~~~~~~~~~~l~~~~~  476 (479)
                      .+|+|.++++.+.  .+.++...++..-++.++
T Consensus        90 ~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l  122 (279)
T 1qpc_A           90 ENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGM  122 (279)
T ss_dssp             TTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Confidence            9999999997543  233333333333333333

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.59  E-value=2.6e-15  Score=149.96  Aligned_cols=105  Identities=17%  Similarity=0.201  Sum_probs=87.7

Q ss_pred             cccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCC-CCCccceEEEEEeCCeEEEEEecCCCCC
Q 011696          372 QNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIH-HRHLVSLVGYCISDDRRLLIYDYVPNNT  449 (479)
Q Consensus       372 ~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~-HpNIv~LlG~~~~~~~~~LV~Ey~~~Gs  449 (479)
                      +++||+|+||+||+|+. .+|+.||||+++.   ...+++.+|+++|.+++ |+||++|+++|.+++..|||||||.+|+
T Consensus        16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~---~~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~   92 (325)
T 3kn6_A           16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISK---RMEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGE   92 (325)
T ss_dssp             SCCSEEETTEEEEEEEETTTCCEEEEEEEEG---GGHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCB
T ss_pred             CCccccCCCeEEEEEEECCCCCEEEEEEECh---hhhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCc
Confidence            47899999999999986 4688999999964   23567899999999997 9999999999999999999999999999


Q ss_pred             HHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          450 LYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       450 L~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      |.++++.+..+.+....++..-++.++.||
T Consensus        93 L~~~l~~~~~~~~~~~~~i~~qi~~~l~~L  122 (325)
T 3kn6_A           93 LFERIKKKKHFSETEASYIMRKLVSAVSHM  122 (325)
T ss_dssp             HHHHHHHCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            999998876666666666555555555443

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.59  E-value=1.7e-15  Score=159.56  Aligned_cols=113  Identities=19%  Similarity=0.222  Sum_probs=93.7

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...+.||+|+||+||+|+.. +|+.||||+++...   ....+.|.+|+++|++++|+||++++++|.+.+..+|||
T Consensus        16 ~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~   95 (476)
T 2y94_A           16 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVM   95 (476)
T ss_dssp             TTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence            56788899999999999999864 78999999996432   223457999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      |||.+|+|+++|..+..+.++...++..-++.++.||
T Consensus        96 E~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~L  132 (476)
T 2y94_A           96 EYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYC  132 (476)
T ss_dssp             ECCSSEEHHHHTTSSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             eCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999998776666666666665555555543

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.59  E-value=1.3e-15  Score=150.07  Aligned_cols=93  Identities=26%  Similarity=0.407  Sum_probs=80.6

Q ss_pred             hcCccccccccccCccceEEEEe------CCCCEEEEEEeecCCC-cchHhHHHHHHHHHhC-CCCCccceEEEEEeCCe
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL------PDGREVAIKQLKIGGG-QGEREFKAEVEIISRI-HHRHLVSLVGYCISDDR  437 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~------~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~  437 (479)
                      .++|...++||+|+||+||+|++      .+++.||||+++.... ...+.|.+|+++|++| +|+||++++|+|.+.+.
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~  101 (313)
T 1t46_A           22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGP  101 (313)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             hhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCC
Confidence            35688889999999999999984      3467899999975543 3346799999999999 99999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcCC
Q 011696          438 RLLIYDYVPNNTLYFHLHGKW  458 (479)
Q Consensus       438 ~~LV~Ey~~~GsL~~~L~~~~  458 (479)
                      .+||||||.+|+|.++|+.+.
T Consensus       102 ~~lv~e~~~~~~L~~~l~~~~  122 (313)
T 1t46_A          102 TLVITEYCCYGDLLNFLRRKR  122 (313)
T ss_dssp             CEEEEECCTTEEHHHHHHHTT
T ss_pred             cEEEEecCCCCCHHHHHHhcc
Confidence            999999999999999998653

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.59  E-value=2.1e-15  Score=149.27  Aligned_cols=113  Identities=17%  Similarity=0.146  Sum_probs=91.1

Q ss_pred             hcCccccccccccCccceEEEEeC-CCCEEEEEEeecCCCc---chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ---GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~---~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      .++|...++||+|+||+||+|+.. +|+.||||+++.....   ..++|.+|+++|++++|+||++++++|.+++..+||
T Consensus        33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv  112 (309)
T 2h34_A           33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVD  112 (309)
T ss_dssp             -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEE
Confidence            467888999999999999999864 6889999999754322   235799999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          442 YDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||+.+|+|.++++.+..+.++...++..-++.++.|
T Consensus       113 ~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~  149 (309)
T 2h34_A          113 MRLINGVDLAAMLRRQGPLAPPRAVAIVRQIGSALDA  149 (309)
T ss_dssp             EECCCCEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999876555555555554444444443

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.59  E-value=1.8e-15  Score=157.97  Aligned_cols=113  Identities=19%  Similarity=0.249  Sum_probs=91.2

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      .++|...++||+|+||+||+|.. .+|+.||||+++....  .+.++|.+|+++|++|+|+|||+|+++|.+++..||||
T Consensus        10 ~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~   89 (444)
T 3soa_A           10 TEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIF   89 (444)
T ss_dssp             HHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             cCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEEE
Confidence            45688889999999999999975 5788999999975443  23457999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||.+|+|++++..+..+.+....++..-++.++.|
T Consensus        90 E~~~gg~L~~~i~~~~~~~e~~~~~i~~qil~aL~~  125 (444)
T 3soa_A           90 DLVTGGELFEDIVAREYYSEADASHCIQQILEAVLH  125 (444)
T ss_dssp             CCCBCCBHHHHHHHCSCCCHHHHHHHHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999877666555555555555555544

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.59  E-value=1.9e-15  Score=156.48  Aligned_cols=113  Identities=16%  Similarity=0.269  Sum_probs=88.5

Q ss_pred             HhcCccccccccccCccceEEEEe-CCCCEEEEEEeecCC--------CcchHhHHHHHHHHHhCCCCCccceEEEEEeC
Q 011696          365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--------GQGEREFKAEVEIISRIHHRHLVSLVGYCISD  435 (479)
Q Consensus       365 ~~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~--------~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~  435 (479)
                      ..++|...++||+|+||+||+|+. .+++.||||+++...        .....+|.+|+++|++|+|+|||+|+++|. .
T Consensus       133 ~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~-~  211 (419)
T 3i6u_A          133 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD-A  211 (419)
T ss_dssp             HHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE-S
T ss_pred             hhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe-c
Confidence            457899999999999999999985 467899999996432        112235999999999999999999999974 5


Q ss_pred             CeEEEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          436 DRRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       436 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      +..+||||||.+|+|++++..+..+.+.....+..-++.++.|
T Consensus       212 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~  254 (419)
T 3i6u_A          212 EDYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQY  254 (419)
T ss_dssp             SEEEEEEECCTTCBGGGGTSSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence            5689999999999999998876666555555555555555544

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.59  E-value=6.6e-16  Score=161.08  Aligned_cols=114  Identities=24%  Similarity=0.295  Sum_probs=84.0

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecC---CCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIG---GGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~---~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      .++|...++||+|+||+||+|.. .+|+.||||+++..   .....++|++|+++|++++|+||++|+++|.+.+..+||
T Consensus       147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv  226 (446)
T 4ejn_A          147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV  226 (446)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred             hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence            35688889999999999999985 56889999999743   333446789999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          442 YDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      ||||.+|+|.++|+.+..+.++....+..-++.+|.||
T Consensus       227 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~L  264 (446)
T 4ejn_A          227 MEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYL  264 (446)
T ss_dssp             ECCCSSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             EeeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999998766655555555555555555443

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.59  E-value=3e-15  Score=146.58  Aligned_cols=112  Identities=17%  Similarity=0.259  Sum_probs=85.9

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCc--chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+++.....  ..+++.+|+++|++++|+||++++++|.+++..+||||
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   81 (292)
T 3o0g_A            2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence            4688889999999999999986 46889999999754432  33679999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          444 YVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       444 y~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||.++.+..+...+..+.++...++..-++.++.|
T Consensus        82 ~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~  116 (292)
T 3o0g_A           82 FCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGF  116 (292)
T ss_dssp             CCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence            99864444433334445555555555444444443

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.59  E-value=3.1e-15  Score=146.78  Aligned_cols=111  Identities=25%  Similarity=0.354  Sum_probs=83.8

Q ss_pred             cCccccccccccCccceEEEEe-----CCCCEEEEEEeecCC-CcchHhHHHHHHHHHhCCCCCccceEEEEEeC--CeE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-----PDGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISD--DRR  438 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-----~~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~--~~~  438 (479)
                      +.|...++||+|+||.||+|++     .+|+.||||+++... ....++|.+|+++|++++|+||++++++|.+.  +..
T Consensus        21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~  100 (302)
T 4e5w_A           21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI  100 (302)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCE
T ss_pred             hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceE
Confidence            3477788999999999999984     357899999997443 34456899999999999999999999999877  568


Q ss_pred             EEEEecCCCCCHHHHHhcC-CcccchhHHHHHHHHHHhhc
Q 011696          439 LLIYDYVPNNTLYFHLHGK-WQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~~  477 (479)
                      +|||||+.+|+|.++++.+ ..+.+....++..-++.++.
T Consensus       101 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~  140 (302)
T 4e5w_A          101 KLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMD  140 (302)
T ss_dssp             EEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999543 33444444444444444443

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.59  E-value=2.3e-15  Score=150.49  Aligned_cols=93  Identities=27%  Similarity=0.447  Sum_probs=79.4

Q ss_pred             hcCccccccccccCccceEEEEeC--------CCCEEEEEEeecCCC-cchHhHHHHHHHHHhC-CCCCccceEEEEEeC
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLP--------DGREVAIKQLKIGGG-QGEREFKAEVEIISRI-HHRHLVSLVGYCISD  435 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~--------~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~  435 (479)
                      .++|...+.||+|+||+||+|+..        +++.||||+++.... ...++|.+|+++|+++ +|+||++++|+|.+.
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~  113 (334)
T 2pvf_A           34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD  113 (334)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccC
Confidence            356888899999999999999862        467899999975443 3346799999999999 999999999999999


Q ss_pred             CeEEEEEecCCCCCHHHHHhcCC
Q 011696          436 DRRLLIYDYVPNNTLYFHLHGKW  458 (479)
Q Consensus       436 ~~~~LV~Ey~~~GsL~~~L~~~~  458 (479)
                      +..+|||||+.+|+|.++|+.+.
T Consensus       114 ~~~~lv~e~~~~~~L~~~l~~~~  136 (334)
T 2pvf_A          114 GPLYVIVEYASKGNLREYLRARR  136 (334)
T ss_dssp             SCCEEEEECCTTCBHHHHHHTTS
T ss_pred             CceEEEEECCCCCcHHHHHHHhc
Confidence            99999999999999999998653

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.59  E-value=1.5e-15  Score=152.84  Aligned_cols=111  Identities=17%  Similarity=0.229  Sum_probs=91.4

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...+.||+|+||+||+|+. .+|+.||||+++...   ....+.|.+|+++|++++|+||++|+++|.+.+..+|||
T Consensus         9 ~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~   88 (336)
T 3h4j_B            9 GPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVI   88 (336)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            5788889999999999999985 678899999996432   223457999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||+ +|+|++++..+..+.++...++..-++.++.|
T Consensus        89 E~~-~g~l~~~l~~~~~l~~~~~~~i~~qi~~aL~~  123 (336)
T 3h4j_B           89 EYA-GGELFDYIVEKKRMTEDEGRRFFQQIICAIEY  123 (336)
T ss_dssp             CCC-CEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHH
T ss_pred             ECC-CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            999 79999999876666666666655555555544

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.59  E-value=2e-15  Score=154.18  Aligned_cols=93  Identities=27%  Similarity=0.435  Sum_probs=79.7

Q ss_pred             hcCccccccccccCccceEEEEeC--------CCCEEEEEEeecCCCc-chHhHHHHHHHHHhC-CCCCccceEEEEEeC
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLP--------DGREVAIKQLKIGGGQ-GEREFKAEVEIISRI-HHRHLVSLVGYCISD  435 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~--------~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~  435 (479)
                      .++|...++||+|+||+||+|+..        +++.||||+++..... ..++|.+|+++|+++ +|+|||+|+|+|.++
T Consensus        68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~  147 (382)
T 3tt0_A           68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD  147 (382)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccC
Confidence            356888899999999999999852        2357999999755433 346799999999999 999999999999999


Q ss_pred             CeEEEEEecCCCCCHHHHHhcCC
Q 011696          436 DRRLLIYDYVPNNTLYFHLHGKW  458 (479)
Q Consensus       436 ~~~~LV~Ey~~~GsL~~~L~~~~  458 (479)
                      +..+||||||.+|+|.++|+.+.
T Consensus       148 ~~~~lv~e~~~~g~L~~~l~~~~  170 (382)
T 3tt0_A          148 GPLYVIVEYASKGNLREYLQARR  170 (382)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHTC
T ss_pred             CceEEEEEecCCCcHHHHHHHhc
Confidence            99999999999999999998653

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.59  E-value=4.2e-15  Score=146.64  Aligned_cols=90  Identities=19%  Similarity=0.365  Sum_probs=77.4

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC---cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||.||+|.. .+|+.||||+++....   ...++|.+|+++|++|+|+||++++++|.+++..+|||
T Consensus        32 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~  111 (310)
T 2wqm_A           32 ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL  111 (310)
T ss_dssp             GGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             cceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEEE
Confidence            5688889999999999999985 5789999999975332   23457999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhc
Q 011696          443 DYVPNNTLYFHLHG  456 (479)
Q Consensus       443 Ey~~~GsL~~~L~~  456 (479)
                      ||+.+|+|.+++..
T Consensus       112 e~~~~~~L~~~l~~  125 (310)
T 2wqm_A          112 ELADAGDLSRMIKH  125 (310)
T ss_dssp             ECCCSCBHHHHHHH
T ss_pred             ecCCCCCHHHHHHH
Confidence            99999999998864

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.59  E-value=2.1e-15  Score=154.81  Aligned_cols=112  Identities=19%  Similarity=0.215  Sum_probs=87.4

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCC-CcchHhHHHHHHHHHhCCCCCccceEEEEEeCC--eEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDD--RRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~--~~~LV~  442 (479)
                      ++|...++||+|+||+||+|+.. +|+.||||+++... ....+.|.+|+++|++++|+|||+++++|.+.+  ..+|||
T Consensus         9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~   88 (396)
T 4eut_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM   88 (396)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred             CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEE
Confidence            46788899999999999999864 48999999997543 234567899999999999999999999998765  679999


Q ss_pred             ecCCCCCHHHHHhcCCc---ccchhHHHHHHHHHHhhcc
Q 011696          443 DYVPNNTLYFHLHGKWQ---LGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~---~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||.+|+|.++|+....   +.+....++..-++.++.|
T Consensus        89 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~  127 (396)
T 4eut_A           89 EFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNH  127 (396)
T ss_dssp             CCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999986432   4444444444444444433

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.59  E-value=3.2e-15  Score=158.39  Aligned_cols=114  Identities=15%  Similarity=0.197  Sum_probs=90.3

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC-------------cchHhHHHHHHHHHhCCCCCccceEEE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG-------------QGEREFKAEVEIISRIHHRHLVSLVGY  431 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~-------------~~~~~f~~Ei~il~~l~HpNIv~LlG~  431 (479)
                      .++|...++||+|+||+||+|+. .+++.||||+++....             ...++|.+|+++|++|+|+|||+|+++
T Consensus        35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~  114 (504)
T 3q5i_A           35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDV  114 (504)
T ss_dssp             GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence            46788889999999999999986 4578999999964321             234579999999999999999999999


Q ss_pred             EEeCCeEEEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          432 CISDDRRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       432 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      |.+.+..+||||||.+|+|++++..+..+.+....++..-++.++.||
T Consensus       115 ~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~l  162 (504)
T 3q5i_A          115 FEDKKYFYLVTEFYEGGELFEQIINRHKFDECDAANIMKQILSGICYL  162 (504)
T ss_dssp             EECSSEEEEEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEcCCEEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998766666665555555555555543

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.59  E-value=6.3e-16  Score=153.49  Aligned_cols=93  Identities=27%  Similarity=0.444  Sum_probs=71.7

Q ss_pred             HhcCccccccccccCccceEEEEeCCC----CEEEEEEeecC--CCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeE
Q 011696          365 ATDGFADQNLLGEGGFGSVYKGYLPDG----REVAIKQLKIG--GGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRR  438 (479)
Q Consensus       365 ~~~~f~~~~~IG~G~fG~Vykg~~~~g----~~VAVK~l~~~--~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~  438 (479)
                      ..++|...++||+|+||+||+|+..+.    ..||||+++..  .....++|.+|+++|++++|+||++++|+|...+..
T Consensus        21 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  100 (323)
T 3qup_A           21 PEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAK  100 (323)
T ss_dssp             C---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC---
T ss_pred             ChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccccc
Confidence            446788899999999999999986433    27999999754  334456899999999999999999999999887765


Q ss_pred             ------EEEEecCCCCCHHHHHhcC
Q 011696          439 ------LLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       439 ------~LV~Ey~~~GsL~~~L~~~  457 (479)
                            ++||||+.+|+|.+++..+
T Consensus       101 ~~~~~~~~v~e~~~~~~L~~~l~~~  125 (323)
T 3qup_A          101 GRLPIPMVILPFMKHGDLHAFLLAS  125 (323)
T ss_dssp             ----CEEEEEECCTTCBHHHHHHHH
T ss_pred             cCCCccEEEEEeccCCcHHHHHHhh
Confidence                  8999999999999998643

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.58  E-value=2.7e-15  Score=146.89  Aligned_cols=113  Identities=19%  Similarity=0.309  Sum_probs=90.4

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC---------cchHhHHHHHHHHHhCC-CCCccceEEEEEe
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---------QGEREFKAEVEIISRIH-HRHLVSLVGYCIS  434 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~---------~~~~~f~~Ei~il~~l~-HpNIv~LlG~~~~  434 (479)
                      .++|...++||+|+||.||+|.. .+|+.||||.++....         ...+.|.+|+++|++++ |+||++++++|.+
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~   95 (298)
T 1phk_A           16 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET   95 (298)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred             hhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeecc
Confidence            46788889999999999999986 4688999999975431         11346899999999995 9999999999999


Q ss_pred             CCeEEEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          435 DDRRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       435 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ++..+|||||+.+|+|.++++.+..+.++...++..-++.++.|
T Consensus        96 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~  139 (298)
T 1phk_A           96 NTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICA  139 (298)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999876555555555554444444443

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.58  E-value=2.2e-15  Score=149.48  Aligned_cols=111  Identities=23%  Similarity=0.319  Sum_probs=85.4

Q ss_pred             cCccccccccccCccceEEEEeCCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      ++|...++||+|+||+||+|+..+|+.||||+++....  ...++|.+|+++|++++|+|||+++++|.+++..+|||||
T Consensus        21 ~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  100 (311)
T 3niz_A           21 EKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFEF  100 (311)
T ss_dssp             CEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEEC
T ss_pred             hhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEcC
Confidence            56788899999999999999988899999999975432  2245799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCC-cccchhHHHHHHHHHHhhcc
Q 011696          445 VPNNTLYFHLHGKW-QLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       445 ~~~GsL~~~L~~~~-~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |.+ +|.+++..+. .+.+.....+..-++.++.|
T Consensus       101 ~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~  134 (311)
T 3niz_A          101 MEK-DLKKVLDENKTGLQDSQIKIYLYQLLRGVAH  134 (311)
T ss_dssp             CSE-EHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCC-CHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence            985 7887776543 24444444444444444443

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.58  E-value=2.9e-15  Score=148.92  Aligned_cols=111  Identities=20%  Similarity=0.355  Sum_probs=74.8

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+++.... ...+++.+|+++|++|+|+|||+++++|.+++..+|||||
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~   84 (317)
T 2pmi_A            5 SQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFEF   84 (317)
T ss_dssp             --------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEEC
T ss_pred             cceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEEe
Confidence            5677789999999999999985 4688999999975443 3346799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCC------cccchhHHHHHHHHHHhhcc
Q 011696          445 VPNNTLYFHLHGKW------QLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       445 ~~~GsL~~~L~~~~------~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |. |+|.+++..+.      .+.++....+..-++.++.|
T Consensus        85 ~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~  123 (317)
T 2pmi_A           85 MD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAF  123 (317)
T ss_dssp             CC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             cC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHH
Confidence            99 69999887532      23444444444444444443

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.58  E-value=1.9e-15  Score=150.97  Aligned_cols=113  Identities=24%  Similarity=0.325  Sum_probs=89.4

Q ss_pred             HhcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCc--chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEE
Q 011696          365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       365 ~~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      ..++|...++||+|+||+||+|+. .+|+.||||+++.....  ..++|.+|+++|++|+|+||++++++|.+++..+||
T Consensus        32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  111 (329)
T 3gbz_A           32 SIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHLI  111 (329)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEEE
T ss_pred             chhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEEE
Confidence            346788899999999999999985 56889999999754432  245689999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          442 YDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||||. |+|.+++..+..+.+....++..-++.++.|
T Consensus       112 ~e~~~-~~L~~~~~~~~~~~~~~~~~i~~ql~~~l~~  147 (329)
T 3gbz_A          112 FEYAE-NDLKKYMDKNPDVSMRVIKSFLYQLINGVNF  147 (329)
T ss_dssp             EECCS-EEHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EecCC-CCHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Confidence            99998 5999999876666665555555555555544

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.58  E-value=2.7e-15  Score=158.56  Aligned_cols=112  Identities=14%  Similarity=0.173  Sum_probs=86.9

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCC--CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      +.|...++||+|+||+||+|+. .+++.||||+++...  ....++|.+|+++|++|+|+|||+|+++|.+.+..+||||
T Consensus        37 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e  116 (494)
T 3lij_A           37 EMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVME  116 (494)
T ss_dssp             HHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             cCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEe
Confidence            4578889999999999999986 468899999997543  3345679999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          444 YVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       444 y~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||.+|+|++++..+..+.+.....+..-++.++.|
T Consensus       117 ~~~~g~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~  151 (494)
T 3lij_A          117 CYKGGELFDEIIHRMKFNEVDAAVIIKQVLSGVTY  151 (494)
T ss_dssp             CCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999988776655555555554444555444

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.58  E-value=4.9e-15  Score=150.52  Aligned_cols=120  Identities=18%  Similarity=0.250  Sum_probs=95.1

Q ss_pred             HHHHHHHhcCccccccccccCccceEEEEeC-CCCEEEEEEeecCCCc--------chHhHHHHHHHHHhC-CCCCccce
Q 011696          359 YEELVKATDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQ--------GEREFKAEVEIISRI-HHRHLVSL  428 (479)
Q Consensus       359 ~eel~~~~~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~--------~~~~f~~Ei~il~~l-~HpNIv~L  428 (479)
                      ++......++|...++||+|+||.||+|+.. +|+.||||+++.....        ..+.|.+|+++|+++ +|+||+++
T Consensus        86 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~  165 (365)
T 2y7j_A           86 WAAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITL  165 (365)
T ss_dssp             HHHHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCE
T ss_pred             chhhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEE
Confidence            3444455677888899999999999999874 6999999999754321        134588999999999 89999999


Q ss_pred             EEEEEeCCeEEEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          429 VGYCISDDRRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       429 lG~~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      +++|...+..+||||||.+|+|.+++..+..+.+.....+..-++.++.|
T Consensus       166 ~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~  215 (365)
T 2y7j_A          166 IDSYESSSFMFLVFDLMRKGELFDYLTEKVALSEKETRSIMRSLLEAVSF  215 (365)
T ss_dssp             EEEEEBSSEEEEEECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeeCCEEEEEEEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999876655555555555555554444

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.58  E-value=2.2e-15  Score=150.88  Aligned_cols=93  Identities=25%  Similarity=0.440  Sum_probs=78.5

Q ss_pred             HhcCccccccccccCccceEEEEe------CCCCEEEEEEeecCC-CcchHhHHHHHHHHHhC-CCCCccceEEEEEeCC
Q 011696          365 ATDGFADQNLLGEGGFGSVYKGYL------PDGREVAIKQLKIGG-GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDD  436 (479)
Q Consensus       365 ~~~~f~~~~~IG~G~fG~Vykg~~------~~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~  436 (479)
                      ..++|...++||+|+||+||+|+.      .+++.||||+++... ....+.|.+|+++|++| +|+||++++|+|...+
T Consensus        43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~  122 (344)
T 1rjb_A           43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSG  122 (344)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCC
Confidence            346788889999999999999985      235579999997543 33456799999999999 9999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhcC
Q 011696          437 RRLLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       437 ~~~LV~Ey~~~GsL~~~L~~~  457 (479)
                      ..+||||||.+|+|.++|+.+
T Consensus       123 ~~~lv~e~~~~g~L~~~l~~~  143 (344)
T 1rjb_A          123 PIYLIFEYCCYGDLLNYLRSK  143 (344)
T ss_dssp             SCEEEEECCTTCBHHHHHHTT
T ss_pred             ccEEEEecCCCCcHHHHHhhc
Confidence            999999999999999999864

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.58  E-value=2.9e-15  Score=162.70  Aligned_cols=104  Identities=26%  Similarity=0.360  Sum_probs=81.8

Q ss_pred             cccccCccceEEEEeC---CCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCCCC
Q 011696          374 LLGEGGFGSVYKGYLP---DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNT  449 (479)
Q Consensus       374 ~IG~G~fG~Vykg~~~---~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~Gs  449 (479)
                      .||+|+||+||+|++.   +++.||||+++.... ...++|++|+++|++|+|+|||+|+|+|.+ +..+||||||.+|+
T Consensus       343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E~~~~g~  421 (613)
T 2ozo_A          343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAGGGP  421 (613)
T ss_dssp             EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEECCTTCB
T ss_pred             EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEEeCCCCc
Confidence            7999999999999863   456799999976543 345789999999999999999999999975 66899999999999


Q ss_pred             HHHHHhcCC-cccchhHHHHHHHHHHhhcc
Q 011696          450 LYFHLHGKW-QLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       450 L~~~L~~~~-~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |.++|+++. .+.+....++..-++.++.|
T Consensus       422 L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~  451 (613)
T 2ozo_A          422 LHKFLVGKREEIPVSNVAELLHQVSMGMKY  451 (613)
T ss_dssp             HHHHHTTCTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhccCCCCHHHHHHHHHHHHHHHHH
Confidence            999997543 34444444444444444444

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.58  E-value=4.6e-15  Score=144.88  Aligned_cols=112  Identities=14%  Similarity=0.217  Sum_probs=90.7

Q ss_pred             hcCccccccccccCccceEEEEeC-CCCEEEEEEeecCC--CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      .++|...++||+|+||+||+|+.. +|+.||||+++...  ....++|.+|+++|++++|+||++++++|.+.+..+|||
T Consensus        21 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~  100 (287)
T 2wei_A           21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVG  100 (287)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEEE
Confidence            467888999999999999999864 68899999996433  344568999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhc
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~  477 (479)
                      ||+.+|+|.+++..+..+.++...++..-++.++.
T Consensus       101 e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~  135 (287)
T 2wei_A          101 ELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGIT  135 (287)
T ss_dssp             CCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred             EccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            99999999998876555544444444444444443

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.58  E-value=2.4e-15  Score=145.89  Aligned_cols=112  Identities=24%  Similarity=0.345  Sum_probs=88.7

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      .++|...++||+|+||.||+|+. .+|+.||||+++...   ....++|.+|++++++++|+||++++++|.+.+..+||
T Consensus        10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   89 (278)
T 3cok_A           10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLV   89 (278)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEE
Confidence            35688889999999999999986 578999999996432   22346799999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcC-CcccchhHHHHHHHHHHhhc
Q 011696          442 YDYVPNNTLYFHLHGK-WQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~~  477 (479)
                      |||+.+|+|.++++.+ ..+.++...++..-++.++.
T Consensus        90 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~  126 (278)
T 3cok_A           90 LEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGML  126 (278)
T ss_dssp             EECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHH
T ss_pred             EecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999865 33444444444443444443

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.58  E-value=2.2e-15  Score=146.38  Aligned_cols=113  Identities=27%  Similarity=0.326  Sum_probs=89.7

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      .++|...++||+|+||+||+|+. .+++.||||++....   ....++|.+|+++|++++|+||++++|+|.+.+..+||
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   87 (279)
T 3fdn_A            8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI   87 (279)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEE
Confidence            35688889999999999999986 457789999986432   12345799999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          442 YDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||+.+|+|.+++.....+.+.....+..-++.++.|
T Consensus        88 ~e~~~~~~l~~~l~~~~~~~~~~~~~~~~qi~~~l~~  124 (279)
T 3fdn_A           88 LEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY  124 (279)
T ss_dssp             ECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             EecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999998865555555444444444444443

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.58  E-value=5.3e-16  Score=153.87  Aligned_cols=95  Identities=25%  Similarity=0.394  Sum_probs=81.2

Q ss_pred             HHHHhcCccccccccccCccceEEEEeC------CCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEe
Q 011696          362 LVKATDGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCIS  434 (479)
Q Consensus       362 l~~~~~~f~~~~~IG~G~fG~Vykg~~~------~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~  434 (479)
                      +....++|...++||+|+||.||+|+..      +++.||||+++.... ...++|.+|+++|++++|+||++++|+|.+
T Consensus        20 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~   99 (322)
T 1p4o_A           20 WEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQ   99 (322)
T ss_dssp             TBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECS
T ss_pred             hcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEcc
Confidence            3344567888999999999999999753      367899999975443 334579999999999999999999999999


Q ss_pred             CCeEEEEEecCCCCCHHHHHhc
Q 011696          435 DDRRLLIYDYVPNNTLYFHLHG  456 (479)
Q Consensus       435 ~~~~~LV~Ey~~~GsL~~~L~~  456 (479)
                      .+..+||||||.+|+|.++|+.
T Consensus       100 ~~~~~lv~e~~~~~~L~~~l~~  121 (322)
T 1p4o_A          100 GQPTLVIMELMTRGDLKSYLRS  121 (322)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHH
T ss_pred             CCccEEEEEeCCCCcHHHHHHH
Confidence            9999999999999999999875

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.58  E-value=3.2e-15  Score=148.86  Aligned_cols=91  Identities=29%  Similarity=0.456  Sum_probs=76.8

Q ss_pred             cCccccccccccCccceEEEEe------CCCCEEEEEEeecCC-CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL------PDGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL  439 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~------~~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~  439 (479)
                      ++|...++||+|+||.||+|++      .+++.||||+++... ....++|.+|+++|++|+|+||++++|+|.+.+..+
T Consensus        30 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  109 (327)
T 2yfx_A           30 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRF  109 (327)
T ss_dssp             GGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred             hheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCcE
Confidence            5688889999999999999984      246789999997443 334567999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcC
Q 011696          440 LIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~  457 (479)
                      ||||||.+|+|.++|+..
T Consensus       110 lv~e~~~~~~L~~~l~~~  127 (327)
T 2yfx_A          110 ILMELMAGGDLKSFLRET  127 (327)
T ss_dssp             EEEECCTTEEHHHHHHHT
T ss_pred             EEEecCCCCcHHHHHHhh
Confidence            999999999999999865

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.58  E-value=5.5e-15  Score=147.57  Aligned_cols=112  Identities=22%  Similarity=0.334  Sum_probs=90.0

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCCCcc--hHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQG--EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~~--~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      ++|...++||+|+||.||+|+.. +|+.||||++.......  .+.|.+|+++|++++|+||++++++|.+.+..+||||
T Consensus        25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  104 (331)
T 4aaa_A           25 EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFE  104 (331)
T ss_dssp             GGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEEe
Confidence            56888899999999999999864 58899999986544332  3468999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          444 YVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       444 y~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |+.+|+|.+++.....+.+....++..-++.++.|
T Consensus       105 ~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~  139 (331)
T 4aaa_A          105 FVDHTILDDLELFPNGLDYQVVQKYLFQIINGIGF  139 (331)
T ss_dssp             CCSEEHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCcchHHHHHhhccCCCHHHHHHHHHHHHHHHHH
Confidence            99999998887655555555555555544444443

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.58  E-value=3.4e-15  Score=149.50  Aligned_cols=111  Identities=26%  Similarity=0.343  Sum_probs=85.7

Q ss_pred             cCccccccccccCccceEEEEeCC-----CCEEEEEEeecCCCc-chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPD-----GREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~-----g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~L  440 (479)
                      ++|...++||+|+||+||+|++.+     ++.||||+++..... ..++|.+|+++|++|+|+||++++|+|.+.+..+|
T Consensus        44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  123 (333)
T 1mqb_A           44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMI  123 (333)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEE
Confidence            456677899999999999998632     235999999754433 34579999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcC-CcccchhHHHHHHHHHHhhc
Q 011696          441 IYDYVPNNTLYFHLHGK-WQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~~  477 (479)
                      |||||.+|+|.++|+.+ ..+.+....++..-++.++.
T Consensus       124 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~  161 (333)
T 1mqb_A          124 ITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMK  161 (333)
T ss_dssp             EEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999764 33444444444443444443

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.58  E-value=4.2e-15  Score=156.45  Aligned_cols=112  Identities=16%  Similarity=0.239  Sum_probs=92.6

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||+||+|+.. +|+.||||++....   ....+.|.+|+++|++|+|+|||+++++|.+.+..+|||
T Consensus        26 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  105 (484)
T 3nyv_A           26 DRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVG  105 (484)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             CceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence            45788899999999999999864 78999999996443   234567999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||.+|+|++++..+..+.+....++..-++.++.|
T Consensus       106 e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~  141 (484)
T 3nyv_A          106 EVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITY  141 (484)
T ss_dssp             CCCCSCBHHHHHHTCSCCBHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999877666555555555555555544

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.58  E-value=2.6e-15  Score=152.20  Aligned_cols=114  Identities=18%  Similarity=0.193  Sum_probs=93.6

Q ss_pred             hcCccccccccccCccceEEEEeC-CCCEEEEEEeecCC---CcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~L  440 (479)
                      .++|...++||+|+||+||+|+.. +|+.||||+++...   ....+.+.+|+++|..+ +|+||++|++++.+.+..||
T Consensus        19 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l   98 (353)
T 2i0e_A           19 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYF   98 (353)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEEE
T ss_pred             hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEEE
Confidence            467888999999999999999874 47889999997432   23456789999999998 89999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          441 IYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      |||||.+|+|.++|+.+..+.++....+..-++.++.||
T Consensus        99 v~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~L  137 (353)
T 2i0e_A           99 VMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFL  137 (353)
T ss_dssp             EEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999998766666666666665555555543

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.57  E-value=2.4e-15  Score=147.75  Aligned_cols=90  Identities=19%  Similarity=0.287  Sum_probs=72.6

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC--------------------------cchHhHHHHHHHHHh
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--------------------------QGEREFKAEVEIISR  419 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~--------------------------~~~~~f~~Ei~il~~  419 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+++....                          ...++|.+|+++|++
T Consensus        13 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~   92 (298)
T 2zv2_A           13 NQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKK   92 (298)
T ss_dssp             TTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHT
T ss_pred             cceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHh
Confidence            5788889999999999999985 4688999999964321                          113569999999999


Q ss_pred             CCCCCccceEEEEEe--CCeEEEEEecCCCCCHHHHHhc
Q 011696          420 IHHRHLVSLVGYCIS--DDRRLLIYDYVPNNTLYFHLHG  456 (479)
Q Consensus       420 l~HpNIv~LlG~~~~--~~~~~LV~Ey~~~GsL~~~L~~  456 (479)
                      |+|+||++++++|.+  .+..+||||||.+|+|.+++..
T Consensus        93 l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~  131 (298)
T 2zv2_A           93 LDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL  131 (298)
T ss_dssp             CCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS
T ss_pred             CCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc
Confidence            999999999999987  5678999999999999876543

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.57  E-value=2.3e-15  Score=148.90  Aligned_cols=88  Identities=31%  Similarity=0.578  Sum_probs=76.3

Q ss_pred             cCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~  446 (479)
                      ++|...++||+|+||+||+|++ +++.||||+++.  ....++|.+|+++|++++|+||++++|+|.  +..+||||||+
T Consensus         8 ~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~--~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~lv~e~~~   82 (307)
T 2eva_A            8 KEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIES--ESERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVMEYAE   82 (307)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEE-TTEEEEEEECSS--TTHHHHHHHHHHHHHHCCCTTBCCEEEBCT--TTTEEEEECCT
T ss_pred             hHeeeeeEeecCCCceEEEEEE-CCeeEEEEEecC--hhHHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCcEEEEEcCC
Confidence            4577789999999999999998 578899999863  234568999999999999999999999986  45789999999


Q ss_pred             CCCHHHHHhcCCc
Q 011696          447 NNTLYFHLHGKWQ  459 (479)
Q Consensus       447 ~GsL~~~L~~~~~  459 (479)
                      +|+|.++|+.+..
T Consensus        83 ~~~L~~~l~~~~~   95 (307)
T 2eva_A           83 GGSLYNVLHGAEP   95 (307)
T ss_dssp             TCBHHHHHHCSSS
T ss_pred             CCCHHHHHhccCC
Confidence            9999999986543

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.57  E-value=2.1e-15  Score=148.76  Aligned_cols=102  Identities=27%  Similarity=0.422  Sum_probs=84.4

Q ss_pred             ccHHHHHHHhcCccccccccccCccceEEEEe------CCCCEEEEEEeecCCCc-chHhHHHHHHHHHhC-CCCCccce
Q 011696          357 FTYEELVKATDGFADQNLLGEGGFGSVYKGYL------PDGREVAIKQLKIGGGQ-GEREFKAEVEIISRI-HHRHLVSL  428 (479)
Q Consensus       357 ~~~eel~~~~~~f~~~~~IG~G~fG~Vykg~~------~~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l-~HpNIv~L  428 (479)
                      +...++....++|...++||+|+||+||+|++      .+++.||||+++..... ..++|.+|+++|.++ +|+||+++
T Consensus        17 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~   96 (316)
T 2xir_A           17 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL   96 (316)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             ccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeE
Confidence            34455555668899999999999999999974      34678999999765433 345799999999999 79999999


Q ss_pred             EEEEEeCCe-EEEEEecCCCCCHHHHHhcCC
Q 011696          429 VGYCISDDR-RLLIYDYVPNNTLYFHLHGKW  458 (479)
Q Consensus       429 lG~~~~~~~-~~LV~Ey~~~GsL~~~L~~~~  458 (479)
                      +|+|...+. .+||||||.+|+|.++++.+.
T Consensus        97 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  127 (316)
T 2xir_A           97 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKR  127 (316)
T ss_dssp             EEEECCTTSCCEEEEECCTTEEHHHHHHTCT
T ss_pred             EEEEecCCCceEEEEEcCCCCcHHHHHHhcc
Confidence            999987654 899999999999999998654

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.57  E-value=6.7e-15  Score=146.19  Aligned_cols=108  Identities=27%  Similarity=0.377  Sum_probs=84.0

Q ss_pred             ccccccccccCccceEEEEeC-----CCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeC--CeEEE
Q 011696          369 FADQNLLGEGGFGSVYKGYLP-----DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISD--DRRLL  440 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~~-----~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~--~~~~L  440 (479)
                      |...++||+|+||+||++.+.     +|+.||||+++.... ...+.|.+|+++|++|+|+||++++++|.+.  +..+|
T Consensus        33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l  112 (318)
T 3lxp_A           33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQL  112 (318)
T ss_dssp             EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEE
T ss_pred             HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEE
Confidence            467789999999999998752     577899999976543 3345799999999999999999999999984  56789


Q ss_pred             EEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhc
Q 011696          441 IYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~  477 (479)
                      |||||.+|+|.+++..+. +.+....++..-++.++.
T Consensus       113 v~e~~~~~~L~~~l~~~~-~~~~~~~~i~~~l~~~l~  148 (318)
T 3lxp_A          113 VMEYVPLGSLRDYLPRHS-IGLAQLLLFAQQICEGMA  148 (318)
T ss_dssp             EECCCTTCBHHHHGGGSC-CCHHHHHHHHHHHHHHHH
T ss_pred             EEecccCCcHHHHHhhCC-CCHHHHHHHHHHHHHHHH
Confidence            999999999999997643 344444444444444443

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.57  E-value=3.8e-15  Score=157.01  Aligned_cols=112  Identities=14%  Similarity=0.197  Sum_probs=92.3

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecC--CCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIG--GGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~--~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+++..  .....+.|.+|+++|++|+|+|||+|+++|.+.+..+||||
T Consensus        22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e  101 (486)
T 3mwu_A           22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGE  101 (486)
T ss_dssp             HHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             cceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEEE
Confidence            5688889999999999999986 46889999999632  23345689999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          444 YVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       444 y~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||.+|+|++++..+..+.+....++..-++.++.|
T Consensus       102 ~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~al~~  136 (486)
T 3mwu_A          102 LYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITY  136 (486)
T ss_dssp             CCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999988776666555555555555555544

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.57  E-value=4.7e-15  Score=143.77  Aligned_cols=90  Identities=18%  Similarity=0.340  Sum_probs=77.8

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEe--CCeEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCIS--DDRRLLI  441 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~--~~~~~LV  441 (479)
                      ++|...++||+|+||+||++.. .+|+.||||+++....  ...+.|.+|+++|++++|+||++++|+|.+  .+..+||
T Consensus         6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv   85 (279)
T 2w5a_A            6 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIV   85 (279)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEEE
T ss_pred             hheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEEE
Confidence            5688889999999999999986 4688999999975443  234579999999999999999999999875  5678999


Q ss_pred             EecCCCCCHHHHHhc
Q 011696          442 YDYVPNNTLYFHLHG  456 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~  456 (479)
                      |||+++|+|.+++..
T Consensus        86 ~e~~~~~~L~~~l~~  100 (279)
T 2w5a_A           86 MEYCEGGDLASVITK  100 (279)
T ss_dssp             EECCTTEEHHHHHHH
T ss_pred             EeCCCCCCHHHHHHh
Confidence            999999999999875

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.57  E-value=2.7e-15  Score=146.17  Aligned_cols=112  Identities=23%  Similarity=0.311  Sum_probs=89.6

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...+.||+|+||.||+|+.. +++.||||++....   ....++|.+|+++|++++|+||++++++|.+.+..+|||
T Consensus        14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   93 (284)
T 2vgo_A           14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLML   93 (284)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEE
Confidence            56888899999999999999864 57789999996432   223467999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||+.+|+|.+++..+..+.++...++..-++.++.|
T Consensus        94 e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~  129 (284)
T 2vgo_A           94 EFAPRGELYKELQKHGRFDEQRSATFMEELADALHY  129 (284)
T ss_dssp             CCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             EeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999866555555444444444444433

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.57  E-value=3.9e-15  Score=148.29  Aligned_cols=110  Identities=25%  Similarity=0.362  Sum_probs=85.6

Q ss_pred             cCccccccccccCccceEEEEe-----CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCC--eEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-----PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDD--RRL  439 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-----~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~--~~~  439 (479)
                      ++|...++||+|+||.||++++     .+|+.||||+++.......++|.+|+++|++|+|+||++++|+|...+  ..+
T Consensus        41 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~  120 (326)
T 2w1i_A           41 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLK  120 (326)
T ss_dssp             GGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CCE
T ss_pred             HHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCceE
Confidence            4577789999999999999984     357899999998766666678999999999999999999999997654  678


Q ss_pred             EEEecCCCCCHHHHHhcCC-cccchhHHHHHHHHHHhh
Q 011696          440 LIYDYVPNNTLYFHLHGKW-QLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~~-~~~~~~~~~~~~l~~~~~  476 (479)
                      |||||+.+|+|.++|+... .+.+....++..-++.++
T Consensus       121 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL  158 (326)
T 2w1i_A          121 LIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGM  158 (326)
T ss_dssp             EEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHH
Confidence            9999999999999998643 233333333333333333

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.57  E-value=4.4e-15  Score=145.21  Aligned_cols=110  Identities=19%  Similarity=0.251  Sum_probs=86.4

Q ss_pred             cCccccccccccCccceEEEEeCCCCEEEEEEeecCCCc--chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      ++|...++||+|+||+||+|+..+|+.||||+++.....  ..+.|.+|+++|++++|+||++++++|.+.+..+|||||
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (288)
T 1ob3_A            2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH   81 (288)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence            467888999999999999999878999999999754322  235799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcC-CcccchhHHHHHHHHHHhhc
Q 011696          445 VPNNTLYFHLHGK-WQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       445 ~~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~~  477 (479)
                      +.+ +|.++++.. ..+.+....++..-++.++.
T Consensus        82 ~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~  114 (288)
T 1ob3_A           82 LDQ-DLKKLLDVCEGGLESVTAKSFLLQLLNGIA  114 (288)
T ss_dssp             CSE-EHHHHHHTSTTCCCHHHHHHHHHHHHHHHH
T ss_pred             cCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence            985 898888753 33334444444433444443

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.57  E-value=2.3e-15  Score=151.71  Aligned_cols=109  Identities=17%  Similarity=0.178  Sum_probs=88.8

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEEEEe
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      .++|...++||+|+||+||+|+. .+|+.||||+++...    .++.+|+++|.++ +|+|||+|+++|.+++..|||||
T Consensus        21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~----~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E   96 (342)
T 2qr7_A           21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSK----RDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTE   96 (342)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTT----CCCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEEC
T ss_pred             cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEccc----CChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEe
Confidence            45688889999999999999986 458899999997543    2456789999888 89999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          444 YVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       444 y~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||.+|+|.+++..+..+.++....+..-++.++.|
T Consensus        97 ~~~gg~L~~~i~~~~~~~~~~~~~~~~qi~~al~~  131 (342)
T 2qr7_A           97 LMKGGELLDKILRQKFFSEREASAVLFTITKTVEY  131 (342)
T ss_dssp             CCCSCBHHHHHHTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999877666555555555555555544

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.57  E-value=1.9e-15  Score=152.93  Aligned_cols=112  Identities=22%  Similarity=0.334  Sum_probs=89.7

Q ss_pred             cCccccccccccCccceEEEEe----CCCCEEEEEEeecCC----CcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCe
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL----PDGREVAIKQLKIGG----GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDR  437 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~----~~g~~VAVK~l~~~~----~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~  437 (479)
                      ++|...++||+|+||+||+++.    .+|+.||||+++...    ....+.|.+|+++|+++ +|+||++++++|..++.
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~  133 (355)
T 1vzo_A           54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK  133 (355)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred             cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCce
Confidence            5688889999999999999986    368899999986432    23345788999999999 79999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          438 RLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       438 ~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      .+||||||.+|+|.++|+.+..+.+.....+..-++.++.|
T Consensus       134 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~  174 (355)
T 1vzo_A          134 LHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEH  174 (355)
T ss_dssp             EEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999876555554444444444444443

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.57  E-value=5.6e-15  Score=143.97  Aligned_cols=110  Identities=31%  Similarity=0.484  Sum_probs=84.5

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcc-------hHhHHHHHHHHHhCCCCCccceEEEEEeCCeE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQG-------EREFKAEVEIISRIHHRHLVSLVGYCISDDRR  438 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~-------~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~  438 (479)
                      ++|...++||+|+||+||+|+. .+++.||||+++......       .++|.+|+++|++++|+||++++|+|.+..  
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--   96 (287)
T 4f0f_A           19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP--   96 (287)
T ss_dssp             TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT--
T ss_pred             ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC--
Confidence            5678889999999999999986 578899999996443221       157999999999999999999999985544  


Q ss_pred             EEEEecCCCCCHHHHHhcCC-cccchhHHHHHHHHHHhhcc
Q 011696          439 LLIYDYVPNNTLYFHLHGKW-QLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~~-~~~~~~~~~~~~l~~~~~~~  478 (479)
                      +|||||+.+|+|.+++..+. .+.+....++..-++.++.|
T Consensus        97 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~  137 (287)
T 4f0f_A           97 RMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEY  137 (287)
T ss_dssp             EEEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHH
Confidence            79999999999998887543 34444444444444444433

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.57  E-value=3.2e-15  Score=148.60  Aligned_cols=112  Identities=18%  Similarity=0.279  Sum_probs=84.7

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC--------cchHhHHHHHHHHHhCCCCCccceEEEEEeCC
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--------QGEREFKAEVEIISRIHHRHLVSLVGYCISDD  436 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~--------~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~  436 (479)
                      .++|...++||+|+||.||+|+. .+|+.||||+++....        .....|.+|+++|++|+|+||+++++++..++
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   88 (322)
T 2ycf_A            9 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED   88 (322)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS
T ss_pred             hhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc
Confidence            35688889999999999999986 4578999999864321        12346999999999999999999999987654


Q ss_pred             eEEEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          437 RRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       437 ~~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                       .+||||||.+|+|.+++..+..+.+....++..-++.++.|
T Consensus        89 -~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~  129 (322)
T 2ycf_A           89 -YYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQY  129 (322)
T ss_dssp             -EEEEEECCTTEETHHHHSTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             -eEEEEecCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence             89999999999999998876655555444444444444433

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.57  E-value=3.2e-15  Score=149.01  Aligned_cols=92  Identities=27%  Similarity=0.418  Sum_probs=79.2

Q ss_pred             hcCccccccccccCccceEEEEeCC------CCEEEEEEeecCCC-cchHhHHHHHHHHHhC-CCCCccceEEEEEeCCe
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLPD------GREVAIKQLKIGGG-QGEREFKAEVEIISRI-HHRHLVSLVGYCISDDR  437 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~~------g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~  437 (479)
                      .++|...++||+|+||.||+|....      ++.||||.++.... ...+.|.+|+++|++| +|+||++++|+|.+.+.
T Consensus        45 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~  124 (333)
T 2i1m_A           45 RNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGP  124 (333)
T ss_dssp             TTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             HHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCCc
Confidence            4678888999999999999998532      24799999975543 3345799999999999 89999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcC
Q 011696          438 RLLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       438 ~~LV~Ey~~~GsL~~~L~~~  457 (479)
                      .+||||||.+|+|.++|+.+
T Consensus       125 ~~lv~e~~~~g~L~~~l~~~  144 (333)
T 2i1m_A          125 VLVITEYCCYGDLLNFLRRK  144 (333)
T ss_dssp             CEEEEECCTTEEHHHHHHHH
T ss_pred             eEEEEecCCCCcHHHHHHHh
Confidence            99999999999999998753

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.57  E-value=3e-15  Score=150.33  Aligned_cols=113  Identities=18%  Similarity=0.231  Sum_probs=92.1

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCc--------chHhHHHHHHHHHhCCCCCccceEEEEEeCC
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ--------GEREFKAEVEIISRIHHRHLVSLVGYCISDD  436 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~--------~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~  436 (479)
                      .++|...++||+|+||+||+|+. .+|+.||||+++.....        ..++|.+|+++|++|+|+||++++++|.+.+
T Consensus        23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~  102 (335)
T 3dls_A           23 SQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQG  102 (335)
T ss_dssp             HHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSS
T ss_pred             ccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCC
Confidence            46788889999999999999984 56889999999754321        2346899999999999999999999999999


Q ss_pred             eEEEEEecCCCC-CHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          437 RRLLIYDYVPNN-TLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       437 ~~~LV~Ey~~~G-sL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ..+|||||+.+| +|.++++.+..+.+....++..-++.++.|
T Consensus       103 ~~~lv~e~~~~g~~l~~~~~~~~~l~~~~~~~i~~qi~~~L~~  145 (335)
T 3dls_A          103 FFQLVMEKHGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVGY  145 (335)
T ss_dssp             EEEEEEECCTTSCBHHHHHHTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEeCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999877 999999877666666665555555555544

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.57  E-value=4e-15  Score=150.71  Aligned_cols=111  Identities=14%  Similarity=0.207  Sum_probs=88.1

Q ss_pred             hcCccccccccccCccceEEEE------eCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCC---CCCccceEEEEEeCC
Q 011696          366 TDGFADQNLLGEGGFGSVYKGY------LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIH---HRHLVSLVGYCISDD  436 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~------~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~---HpNIv~LlG~~~~~~  436 (479)
                      .++|...++||+|+||+||+|+      ..+++.||||+++..   ..++|.+|++++.+|+   |.||++++++|...+
T Consensus        64 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~~  140 (365)
T 3e7e_A           64 SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA---NPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQN  140 (365)
T ss_dssp             SSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC---CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEECSS
T ss_pred             CEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC---ChhHHHHHHHHHHHhhhhhhhhhhhhheeeecCC
Confidence            3568888999999999999994      456889999999643   3567889999998887   999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhc-----CCcccchhHHHHHHHHHHhhccC
Q 011696          437 RRLLIYDYVPNNTLYFHLHG-----KWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       437 ~~~LV~Ey~~~GsL~~~L~~-----~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      ..|||||||.+|+|.++|+.     ...+.+....++..-++.++.||
T Consensus       141 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~l  188 (365)
T 3e7e_A          141 GSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQV  188 (365)
T ss_dssp             CEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999974     33455555555555555555543

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.57  E-value=1.5e-15  Score=152.29  Aligned_cols=86  Identities=21%  Similarity=0.330  Sum_probs=76.8

Q ss_pred             cCccccccccccCccceEEEEeCCCCEEEEEEeecCCCc---c--------------hHhHHHHHHHHHhCCCCCccceE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ---G--------------EREFKAEVEIISRIHHRHLVSLV  429 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~---~--------------~~~f~~Ei~il~~l~HpNIv~Ll  429 (479)
                      ++|...++||+|+||.||+|.. +|+.||||+++.....   .              .++|.+|+++|++|+|+||++++
T Consensus        31 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~  109 (348)
T 2pml_X           31 NDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCE  109 (348)
T ss_dssp             TTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCCS
T ss_pred             CceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceEE
Confidence            5788889999999999999998 9999999999643211   1              17899999999999999999999


Q ss_pred             EEEEeCCeEEEEEecCCCCCHHHH
Q 011696          430 GYCISDDRRLLIYDYVPNNTLYFH  453 (479)
Q Consensus       430 G~~~~~~~~~LV~Ey~~~GsL~~~  453 (479)
                      |+|.+.+..+||||||.+|+|.++
T Consensus       110 ~~~~~~~~~~lv~e~~~~~~L~~~  133 (348)
T 2pml_X          110 GIITNYDEVYIIYEYMENDSILKF  133 (348)
T ss_dssp             EEEESSSEEEEEEECCTTCBSSEE
T ss_pred             EEEeeCCeEEEEEeccCCCcHHHH
Confidence            999999999999999999999998

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.56  E-value=4.1e-15  Score=162.15  Aligned_cols=106  Identities=23%  Similarity=0.307  Sum_probs=84.2

Q ss_pred             ccccccCccceEEEEeC---CCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCC
Q 011696          373 NLLGEGGFGSVYKGYLP---DGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~---~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~  447 (479)
                      ++||+|+||+||+|.+.   +++.||||+++....  ...++|++|+++|++|+|+|||+|+|+|. .+..+||||||.+
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~-~~~~~lv~E~~~~  453 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE-AESWMLVMEMAEL  453 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEE-SSSEEEEEECCTT
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCCEEEEEEccCC
Confidence            47999999999999753   457899999975432  33568999999999999999999999996 5568899999999


Q ss_pred             CCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          448 NTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       448 GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      |+|.++|+.+..+.+....++..-++.++.||
T Consensus       454 g~L~~~l~~~~~l~~~~~~~i~~qi~~~L~yL  485 (635)
T 4fl3_A          454 GPLNKYLQQNRHVKDKNIIELVHQVSMGMKYL  485 (635)
T ss_dssp             EEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999998776665655555555555555543

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.56  E-value=2.7e-15  Score=146.86  Aligned_cols=112  Identities=21%  Similarity=0.280  Sum_probs=85.2

Q ss_pred             hcCccccc-cccccCccceEEEEe---CCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEE
Q 011696          366 TDGFADQN-LLGEGGFGSVYKGYL---PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL  439 (479)
Q Consensus       366 ~~~f~~~~-~IG~G~fG~Vykg~~---~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~  439 (479)
                      .++|...+ +||+|+||+||+|.+   .+++.||||+++....  ...++|.+|+++|++++|+||++++|+| +.+..+
T Consensus        15 ~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~   93 (291)
T 1xbb_A           15 RKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWM   93 (291)
T ss_dssp             GGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEE
T ss_pred             chhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcE
Confidence            35566666 899999999999964   2367899999975432  2346799999999999999999999999 677789


Q ss_pred             EEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          440 LIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||||+.+|+|.++++.+..+.++...++..-++.++.|
T Consensus        94 lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~  132 (291)
T 1xbb_A           94 LVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKY  132 (291)
T ss_dssp             EEEECCTTEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHhCcCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999876655555554444444444443

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.56  E-value=5.5e-15  Score=144.40  Aligned_cols=110  Identities=20%  Similarity=0.220  Sum_probs=85.4

Q ss_pred             ccccccccccCccceEEEEe-CCCCEEEEEEeecCC--CcchHhHHHHHHHHHhCCCCCccceEEEEEe----CCeEEEE
Q 011696          369 FADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCIS----DDRRLLI  441 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~----~~~~~LV  441 (479)
                      |...++||+|+||.||+|.. .+++.||||.++...  ....+.|.+|+++|++++|+||++++++|..    .+..+||
T Consensus        28 ~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv  107 (290)
T 1t4h_A           28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLV  107 (290)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEE
T ss_pred             EEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEEE
Confidence            55667899999999999986 467889999997443  2334579999999999999999999999875    3457899


Q ss_pred             EecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          442 YDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||||.+|+|.++++....+.+....++..-++.++.|
T Consensus       108 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~  144 (290)
T 1t4h_A          108 TELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQF  144 (290)
T ss_dssp             EECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCCCHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999875555555544444444444443

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.56  E-value=2.2e-15  Score=153.87  Aligned_cols=112  Identities=19%  Similarity=0.262  Sum_probs=82.1

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCCC---cchHhHHHHHHH-HHhCCCCCccceEEEEEeCCeEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG---QGEREFKAEVEI-ISRIHHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~---~~~~~f~~Ei~i-l~~l~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      ++|...++||+|+||+||+++.. +++.||||+++....   ...+++.+|..+ ++.++|+|||+|+++|.+.+..|||
T Consensus        38 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~lv  117 (373)
T 2r5t_A           38 SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFV  117 (373)
T ss_dssp             GGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEEE
Confidence            56888899999999999999864 578899999975432   234467788877 5778999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          442 YDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||||.+|+|+++|+.+..+..+....+..-++.++.|
T Consensus       118 ~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~  154 (373)
T 2r5t_A          118 LDYINGGELFYHLQRERCFLEPRARFYAAEIASALGY  154 (373)
T ss_dssp             EECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             EeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999876655555555555555555544

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.56  E-value=5.2e-15  Score=158.92  Aligned_cols=113  Identities=23%  Similarity=0.285  Sum_probs=89.9

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      .++|...++||+|+||+||+|+. .+|+.||||+++...   ....+.+++|+++|++++|+|||+|+++|.+.+..|||
T Consensus       183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV  262 (576)
T 2acx_A          183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV  262 (576)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence            35678889999999999999986 468999999996432   23445789999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCc--ccchhHHHHHHHHHHhhcc
Q 011696          442 YDYVPNNTLYFHLHGKWQ--LGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~~~--~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||||.+|+|.++|+....  +.+.....+..-++.++.|
T Consensus       263 mEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~y  301 (576)
T 2acx_A          263 LTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLED  301 (576)
T ss_dssp             ECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999986544  4444444444444444444

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.56  E-value=7.2e-15  Score=142.55  Aligned_cols=87  Identities=24%  Similarity=0.463  Sum_probs=75.8

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEe-----------
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS-----------  434 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~-----------  434 (479)
                      ++|...++||+|+||.||+|+.. +|+.||||+++..    .++|.+|+++|++|+|+||++++|+|..           
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~   86 (284)
T 2a19_B           11 MDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYN----NEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKN   86 (284)
T ss_dssp             HHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECC----SGGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC-------
T ss_pred             cccceeeeeccCCceEEEEEEEcCCCeEEEEEEeccc----cHHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccccc
Confidence            56888899999999999999874 7899999999753    2468899999999999999999999865           


Q ss_pred             -----CCeEEEEEecCCCCCHHHHHhcC
Q 011696          435 -----DDRRLLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       435 -----~~~~~LV~Ey~~~GsL~~~L~~~  457 (479)
                           .+..+||||||.+|+|.++++.+
T Consensus        87 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~  114 (284)
T 2a19_B           87 SSRSKTKCLFIQMEFCDKGTLEQWIEKR  114 (284)
T ss_dssp             --CCEEEEEEEEECCCCSCBHHHHHHHG
T ss_pred             ccccCcceEEEEEeccCCCCHHHHHhhc
Confidence                 34478999999999999999754

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.56  E-value=5.1e-15  Score=149.40  Aligned_cols=120  Identities=17%  Similarity=0.228  Sum_probs=92.0

Q ss_pred             cHHHHHHHhcCccccccccccCccceEEEEeCCCCEEEEEEeecCCCc-----------chHhHHHHHHHHHhCCCCCcc
Q 011696          358 TYEELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ-----------GEREFKAEVEIISRIHHRHLV  426 (479)
Q Consensus       358 ~~eel~~~~~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~-----------~~~~f~~Ei~il~~l~HpNIv  426 (479)
                      .++++....++|...++||+|+||.||+|...+|+.||||+++.....           ..++|.+|+++|++++|+||+
T Consensus        13 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv   92 (362)
T 3pg1_A           13 LIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL   92 (362)
T ss_dssp             HHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred             HHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence            356777788999999999999999999999888999999998543221           125799999999999999999


Q ss_pred             ceEEEEEeCC-----eEEEEEecCCCCCHHHHHhcCC-cccchhHHHHHHHHHHhhcc
Q 011696          427 SLVGYCISDD-----RRLLIYDYVPNNTLYFHLHGKW-QLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       427 ~LlG~~~~~~-----~~~LV~Ey~~~GsL~~~L~~~~-~~~~~~~~~~~~l~~~~~~~  478 (479)
                      +++++|...+     ..+||||||. |+|.++++.+. .+.+....++..-++.++.|
T Consensus        93 ~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~  149 (362)
T 3pg1_A           93 GLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQRIVISPQHIQYFMYHILLGLHV  149 (362)
T ss_dssp             CCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             ceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence            9999996533     5789999998 68888887543 34444444444444444443

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.56  E-value=9.7e-15  Score=144.16  Aligned_cols=109  Identities=23%  Similarity=0.294  Sum_probs=82.2

Q ss_pred             hcCccccccccccCccceEEEEeC-CCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      .++|...++||+|+||.||+|... +|+.||||+++...  ..++|.+|+++|++++|+||++++|+|.+.+..+|||||
T Consensus        28 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~  105 (314)
T 3com_A           28 EEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEY  105 (314)
T ss_dssp             --CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             hhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEeec
Confidence            467888899999999999999864 58999999997532  356799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhc-CCcccchhHHHHHHHHHHhh
Q 011696          445 VPNNTLYFHLHG-KWQLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       445 ~~~GsL~~~L~~-~~~~~~~~~~~~~~l~~~~~  476 (479)
                      +.+|+|.+++.. +..+.++...++..-++.++
T Consensus       106 ~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l  138 (314)
T 3com_A          106 CGAGSVSDIIRLRNKTLTEDEIATILQSTLKGL  138 (314)
T ss_dssp             CTTEEHHHHHHHHTCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence            999999999863 33334443333333333333

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.56  E-value=1.2e-14  Score=143.02  Aligned_cols=91  Identities=21%  Similarity=0.380  Sum_probs=80.4

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCC-CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      +.|...++||+|+||.||+|+. .+|+.||||+++... ....++|.+|+++|++++|+||++++|+|.+++..+|||||
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~  101 (303)
T 3a7i_A           22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEY  101 (303)
T ss_dssp             GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEEe
Confidence            4577889999999999999985 468899999997554 33456899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcC
Q 011696          445 VPNNTLYFHLHGK  457 (479)
Q Consensus       445 ~~~GsL~~~L~~~  457 (479)
                      +.+|+|.++++.+
T Consensus       102 ~~~~~L~~~~~~~  114 (303)
T 3a7i_A          102 LGGGSALDLLEPG  114 (303)
T ss_dssp             CTTEEHHHHHTTS
T ss_pred             CCCCcHHHHHhcC
Confidence            9999999998753

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.56  E-value=6.7e-15  Score=143.25  Aligned_cols=110  Identities=22%  Similarity=0.260  Sum_probs=83.4

Q ss_pred             hcCccccccccccCccceEEEEeCC----CCEEEEEEeecCCCc-chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLPD----GREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~~----g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~L  440 (479)
                      .++|...++||+|+||+||+|++.+    +..||||+++..... ..++|.+|+++|++++|+||++++|+| .++..+|
T Consensus        14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~-~~~~~~l   92 (281)
T 1mp8_A           14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVI-TENPVWI   92 (281)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEE-CSSSCEE
T ss_pred             hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEE-ccCccEE
Confidence            3568888999999999999998632    456999998754433 345799999999999999999999998 4567899


Q ss_pred             EEecCCCCCHHHHHhcCC-cccchhHHHHHHHHHHhh
Q 011696          441 IYDYVPNNTLYFHLHGKW-QLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~~-~~~~~~~~~~~~l~~~~~  476 (479)
                      ||||+.+|+|.++++.+. .+.+....++..-++.++
T Consensus        93 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l  129 (281)
T 1mp8_A           93 IMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTAL  129 (281)
T ss_dssp             EEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHH
T ss_pred             EEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999998543 333333333333333333

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.56  E-value=8e-15  Score=146.31  Aligned_cols=109  Identities=13%  Similarity=0.077  Sum_probs=87.6

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEEEEec
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+++...  ..++|.+|+++|++| +|+||+++++++.+++..+|||||
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~   86 (330)
T 2izr_A            9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKS--RAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLEL   86 (330)
T ss_dssp             TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTC--SSCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEEC
T ss_pred             CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEecccc--chHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEEe
Confidence            5688889999999999999985 578899999987543  234799999999999 999999999999999999999999


Q ss_pred             CCCCCHHHHHhcC-CcccchhHHHHHHHHHHhhcc
Q 011696          445 VPNNTLYFHLHGK-WQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       445 ~~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      | +|+|.++++.. ..+.++...++..-++.++.|
T Consensus        87 ~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~  120 (330)
T 2izr_A           87 L-GPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEY  120 (330)
T ss_dssp             C-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             C-CCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            9 99999998853 344555555555545555444

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.55  E-value=1e-14  Score=142.38  Aligned_cols=110  Identities=25%  Similarity=0.364  Sum_probs=83.7

Q ss_pred             cCccccc-cccccCccceEEEEeC---CCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEE
Q 011696          367 DGFADQN-LLGEGGFGSVYKGYLP---DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       367 ~~f~~~~-~IG~G~fG~Vykg~~~---~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      ++|...+ +||+|+||.||+|++.   +++.||||+++.... ...++|.+|+++|++|+|+||++++|+| +.+..+||
T Consensus         9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~lv   87 (287)
T 1u59_A            9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALMLV   87 (287)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEEE
T ss_pred             HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEEE
Confidence            3444444 8999999999999853   577899999976543 3456799999999999999999999999 56678999


Q ss_pred             EecCCCCCHHHHHhcCC-cccchhHHHHHHHHHHhhc
Q 011696          442 YDYVPNNTLYFHLHGKW-QLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~~-~~~~~~~~~~~~l~~~~~~  477 (479)
                      |||+.+|+|.+++..+. .+.+....++..-++.++.
T Consensus        88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~  124 (287)
T 1u59_A           88 MEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMK  124 (287)
T ss_dssp             EECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHH
Confidence            99999999999997543 3444444444444444443

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.55  E-value=9.2e-15  Score=145.54  Aligned_cols=92  Identities=30%  Similarity=0.581  Sum_probs=76.8

Q ss_pred             cCccccccccccCccceEEEEe-CCCCE--EEEEEeecCC-CcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGRE--VAIKQLKIGG-GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~--VAVK~l~~~~-~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      ++|...++||+|+||+||+|+. .+|+.  ||||+++... ....++|.+|+++|+++ +|+||++++|+|.+.+..+||
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv  104 (327)
T 1fvr_A           25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA  104 (327)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEE
Confidence            5678889999999999999986 34554  4999987533 33456799999999999 999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCC
Q 011696          442 YDYVPNNTLYFHLHGKW  458 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~~  458 (479)
                      |||+.+|+|.++++...
T Consensus       105 ~e~~~~~~L~~~l~~~~  121 (327)
T 1fvr_A          105 IEYAPHGNLLDFLRKSR  121 (327)
T ss_dssp             ECCCTTCBHHHHHHTTC
T ss_pred             EecCCCCCHHHHHHhcc
Confidence            99999999999998653

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.55  E-value=7.1e-15  Score=143.61  Aligned_cols=91  Identities=25%  Similarity=0.428  Sum_probs=77.7

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeC---------
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISD---------  435 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~---------  435 (479)
                      .++|...++||+|+||.||+|+. .+|+.||||+++.. ....++|.+|+++|++++|+||++++|+|.+.         
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~   83 (303)
T 1zy4_A            5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTA   83 (303)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC----
T ss_pred             cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcc
Confidence            35688889999999999999985 47899999999642 23346799999999999999999999998763         


Q ss_pred             ----CeEEEEEecCCCCCHHHHHhcC
Q 011696          436 ----DRRLLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       436 ----~~~~LV~Ey~~~GsL~~~L~~~  457 (479)
                          +..+|||||+.+|+|.++++.+
T Consensus        84 ~~~~~~~~lv~e~~~~~~L~~~l~~~  109 (303)
T 1zy4_A           84 VKKKSTLFIQMEYCENGTLYDLIHSE  109 (303)
T ss_dssp             --CEEEEEEEEECCCSCBHHHHHHHS
T ss_pred             cccCCceEEEEecCCCCCHHHhhhcc
Confidence                4578999999999999999854

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.55  E-value=3.3e-15  Score=146.31  Aligned_cols=92  Identities=22%  Similarity=0.374  Sum_probs=65.5

Q ss_pred             HhcCccccccccccCccceEEEEe-CCCCEEEEEEeecCC-CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       365 ~~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ..++|...++||+|+||.||+|+. .+|+.||||+++... ....++|.+|+++|++++|+||++++|+|...+..+|||
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   92 (303)
T 2vwi_A           13 NRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVM   92 (303)
T ss_dssp             CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEEE
T ss_pred             chhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEEe
Confidence            346788899999999999999985 468899999986543 234567999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhc
Q 011696          443 DYVPNNTLYFHLHG  456 (479)
Q Consensus       443 Ey~~~GsL~~~L~~  456 (479)
                      ||+.+|+|.+++..
T Consensus        93 e~~~~~~L~~~l~~  106 (303)
T 2vwi_A           93 KLLSGGSVLDIIKH  106 (303)
T ss_dssp             ECCTTCBHHHHHHH
T ss_pred             hhccCCchHHHHHH
Confidence            99999999998863

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.55  E-value=7e-15  Score=146.75  Aligned_cols=111  Identities=25%  Similarity=0.420  Sum_probs=80.8

Q ss_pred             cCccccccccccCccceEEEEe-CCCC----EEEEEEeecCC-CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGR----EVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~----~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~L  440 (479)
                      ++|...++||+|+||+||+|++ .+|+    .||||.++... ....++|.+|+++|++++|+||++|+|+|.+.+ .++
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~~   93 (327)
T 3poz_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQL   93 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-EEE
T ss_pred             HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-eEE
Confidence            5688889999999999999985 3444    36888886433 344568999999999999999999999998754 789


Q ss_pred             EEecCCCCCHHHHHhcC-CcccchhHHHHHHHHHHhhcc
Q 011696          441 IYDYVPNNTLYFHLHGK-WQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||||.+|+|.++++.+ ..+.+....++..-++.++.|
T Consensus        94 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~  132 (327)
T 3poz_A           94 ITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNY  132 (327)
T ss_dssp             EEECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999863 344444444444444444443

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.55  E-value=4.9e-15  Score=154.87  Aligned_cols=112  Identities=21%  Similarity=0.254  Sum_probs=80.9

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeC-----CeE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISD-----DRR  438 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~-----~~~  438 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+++....  .+.++|++|+++|++|+|+|||+|+++|...     +..
T Consensus        53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~  132 (458)
T 3rp9_A           53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDEL  132 (458)
T ss_dssp             TTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCE
T ss_pred             CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCceE
Confidence            5688889999999999999985 4688999999964332  3346799999999999999999999999543     468


Q ss_pred             EEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          439 LLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      |||||||. |+|.++++.+..+.++....+..-++.+|.||
T Consensus       133 ~lv~e~~~-~~L~~~~~~~~~l~~~~~~~~~~qi~~aL~~L  172 (458)
T 3rp9_A          133 YVVLEIAD-SDFKKLFRTPVYLTELHIKTLLYNLLVGVKYV  172 (458)
T ss_dssp             EEEECCCS-EEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccc-cchhhhcccCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999984 78999988776666666666666666666553

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.55  E-value=3.4e-15  Score=147.56  Aligned_cols=114  Identities=23%  Similarity=0.318  Sum_probs=80.9

Q ss_pred             HhcCccccccccccCccceEEEEeC----CCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCCe-
Q 011696          365 ATDGFADQNLLGEGGFGSVYKGYLP----DGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDR-  437 (479)
Q Consensus       365 ~~~~f~~~~~IG~G~fG~Vykg~~~----~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~-  437 (479)
                      ..++|...++||+|+||.||+|.+.    .++.||||+++....  ...++|.+|+++|++++|+||++++|+|.+.+. 
T Consensus        32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~  111 (313)
T 3brb_A           32 DRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQ  111 (313)
T ss_dssp             CGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC----
T ss_pred             CHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeecccc
Confidence            4467888899999999999999763    244799999975433  234579999999999999999999999987654 


Q ss_pred             ----EEEEEecCCCCCHHHHHhcC------CcccchhHHHHHHHHHHhhcc
Q 011696          438 ----RLLIYDYVPNNTLYFHLHGK------WQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       438 ----~~LV~Ey~~~GsL~~~L~~~------~~~~~~~~~~~~~l~~~~~~~  478 (479)
                          .++|||||.+|+|.++|...      ..+.+....++..-++.++.|
T Consensus       112 ~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~  162 (313)
T 3brb_A          112 GIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEY  162 (313)
T ss_dssp             ---CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHH
Confidence                48999999999999998532      233444444444444444433

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.55  E-value=9.7e-15  Score=146.70  Aligned_cols=111  Identities=16%  Similarity=0.223  Sum_probs=90.7

Q ss_pred             cCccccccccccCccceEEEEeCCCCEEEEEEeecCCCc--chHhHHHHHHHHHhCCC--CCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHH--RHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~H--pNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||.||++...+++.||||+++.....  ..++|.+|+++|.+|+|  +||++++++|.+++..+|||
T Consensus         9 ~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~   88 (343)
T 3dbq_A            9 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM   88 (343)
T ss_dssp             CEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             CEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEEE
Confidence            457788999999999999999888999999999754432  33679999999999977  99999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      | +.+|+|.++++.+..+.+....++..-++.++.|
T Consensus        89 e-~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~  123 (343)
T 3dbq_A           89 E-CGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHT  123 (343)
T ss_dssp             C-CCSEEHHHHHHHSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             e-CCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            9 5788999999877666555555555555555544

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.54  E-value=4.1e-15  Score=147.64  Aligned_cols=115  Identities=24%  Similarity=0.393  Sum_probs=88.9

Q ss_pred             HHHHhcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhC-CCCCccceEEEEEe-----
Q 011696          362 LVKATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCIS-----  434 (479)
Q Consensus       362 l~~~~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~-----  434 (479)
                      +....++|...++||+|+||.||+|+. .+|+.||||+++... ...++|.+|+++|+++ +|+||++++|+|..     
T Consensus        19 l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~   97 (326)
T 2x7f_A           19 LRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPG   97 (326)
T ss_dssp             CCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-STTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--C
T ss_pred             ccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCc-ccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCcc
Confidence            334457788899999999999999986 578899999997533 3456899999999999 89999999999987     


Q ss_pred             -CCeEEEEEecCCCCCHHHHHhcCC--cccchhHHHHHHHHHHhhc
Q 011696          435 -DDRRLLIYDYVPNNTLYFHLHGKW--QLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       435 -~~~~~LV~Ey~~~GsL~~~L~~~~--~~~~~~~~~~~~l~~~~~~  477 (479)
                       .+..+||||||.+|+|.++++...  .+.+++..++..-++.++.
T Consensus        98 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~  143 (326)
T 2x7f_A           98 MDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLS  143 (326)
T ss_dssp             CCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHH
T ss_pred             ccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHH
Confidence             467899999999999999998643  3333333333333333333

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.54  E-value=1.8e-15  Score=146.88  Aligned_cols=90  Identities=24%  Similarity=0.450  Sum_probs=76.5

Q ss_pred             hcCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCC-eEEEEEec
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDD-RRLLIYDY  444 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~-~~~LV~Ey  444 (479)
                      .++|...++||+|+||+||+|.. +|+.||||+++..  ...++|.+|+++|++++|+||++++|+|.+.+ ..+|||||
T Consensus        20 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~   96 (278)
T 1byg_A           20 MKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY   96 (278)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCC--C--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECC
T ss_pred             hhhceEEeEEecCCCceEEEEEE-cCCEEEEEEecch--hHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEec
Confidence            35688889999999999999987 6889999998743  24567999999999999999999999987654 68999999


Q ss_pred             CCCCCHHHHHhcCC
Q 011696          445 VPNNTLYFHLHGKW  458 (479)
Q Consensus       445 ~~~GsL~~~L~~~~  458 (479)
                      +.+|+|.++++.+.
T Consensus        97 ~~~~~L~~~l~~~~  110 (278)
T 1byg_A           97 MAKGSLVDYLRSRG  110 (278)
T ss_dssp             CTTEEHHHHHHHHH
T ss_pred             CCCCCHHHHHHhcc
Confidence            99999999987543

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.54  E-value=1.3e-14  Score=142.01  Aligned_cols=106  Identities=19%  Similarity=0.288  Sum_probs=81.3

Q ss_pred             cCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHh--CCCCCccceEEEEEeC----CeEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISR--IHHRHLVSLVGYCISD----DRRLL  440 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~--l~HpNIv~LlG~~~~~----~~~~L  440 (479)
                      ++|...++||+|+||+||+|++ +|+.||||+++.   ...+++.+|.+++..  ++|+||++++|+|.+.    +..+|
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~---~~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~l   83 (301)
T 3q4u_A            8 RDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSS---RDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWL   83 (301)
T ss_dssp             GGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECG---GGHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEEE
T ss_pred             CcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEecc---ccchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeEE
Confidence            5688889999999999999998 789999999864   345567778888777  7999999999998753    34789


Q ss_pred             EEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhc
Q 011696          441 IYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~  477 (479)
                      |||||.+|+|.++++.+ .+.+....++..-++.++.
T Consensus        84 v~e~~~~g~L~~~l~~~-~~~~~~~~~i~~~i~~~l~  119 (301)
T 3q4u_A           84 ITHYHEMGSLYDYLQLT-TLDTVSCLRIVLSIASGLA  119 (301)
T ss_dssp             EECCCTTCBHHHHHTTC-CBCHHHHHHHHHHHHHHHH
T ss_pred             ehhhccCCCHHHHHhhc-ccCHHHHHHHHHHHHHHHH
Confidence            99999999999999643 3334444444433344443

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.54  E-value=1.3e-14  Score=143.68  Aligned_cols=111  Identities=21%  Similarity=0.122  Sum_probs=84.0

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCCC--cchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG--QGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||+||+|+.. +|+.||||+++....  .+..++++|+..+.++ +|+|||+|+++|.+++..+|||
T Consensus        57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~  136 (311)
T 3p1a_A           57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT  136 (311)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence            46888899999999999999874 789999999865432  2334577777777666 9999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCC-cccchhHHHHHHHHHHhhcc
Q 011696          443 DYVPNNTLYFHLHGKW-QLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~-~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||| +|+|.+++..+. .+.+....++..-++.++.|
T Consensus       137 e~~-~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~  172 (311)
T 3p1a_A          137 ELC-GPSLQQHCEAWGASLPEAQVWGYLRDTLLALAH  172 (311)
T ss_dssp             ECC-CCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHH
T ss_pred             ecc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            999 779988887543 34444444444444444443

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.53  E-value=6.9e-15  Score=150.05  Aligned_cols=91  Identities=26%  Similarity=0.424  Sum_probs=74.8

Q ss_pred             CccccccccccCccceEEEEeC--CC--CEEEEEEeecCC-CcchHhHHHHHHHHHhCCCCCccceEEEEEeC-CeEEEE
Q 011696          368 GFADQNLLGEGGFGSVYKGYLP--DG--REVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISD-DRRLLI  441 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~--~g--~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~-~~~~LV  441 (479)
                      .|...++||+|+||+||+|++.  ++  ..||||.++... ....++|.+|+++|++|+|+|||+++|+|.+. +..+||
T Consensus        90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv  169 (373)
T 3c1x_A           90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVV  169 (373)
T ss_dssp             EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEE
T ss_pred             eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEE
Confidence            3556788999999999999863  22  358999987543 34456899999999999999999999998754 467899


Q ss_pred             EecCCCCCHHHHHhcCC
Q 011696          442 YDYVPNNTLYFHLHGKW  458 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~~  458 (479)
                      ||||.+|+|.++|+.+.
T Consensus       170 ~e~~~~g~L~~~l~~~~  186 (373)
T 3c1x_A          170 LPYMKHGDLRNFIRNET  186 (373)
T ss_dssp             EECCTTCBHHHHHHCTT
T ss_pred             EECCCCCCHHHHHhhcc
Confidence            99999999999997643

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.53  E-value=1.6e-14  Score=148.04  Aligned_cols=111  Identities=17%  Similarity=0.224  Sum_probs=89.1

Q ss_pred             cCccccccccccCccceEEEEeCCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCC--CCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGG--QGEREFKAEVEIISRIH--HRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~--HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||+||++...+|+.||||+++....  ...++|.+|+++|++|+  |+|||+|+++|..++..||||
T Consensus        56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~  135 (390)
T 2zmd_A           56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM  135 (390)
T ss_dssp             EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEE
Confidence            45888899999999999999987899999999975433  33467999999999996  599999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      | +.+|+|.++|+.+..+.+..+.++..-++.++.|
T Consensus       136 E-~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~  170 (390)
T 2zmd_A          136 E-CGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHT  170 (390)
T ss_dssp             E-CCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             e-cCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            9 6789999999876655544444444444444444

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.53  E-value=1.2e-14  Score=142.24  Aligned_cols=109  Identities=17%  Similarity=0.235  Sum_probs=81.8

Q ss_pred             ccccccccccCccceEEEEeC-CCC---EEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeE-EEEE
Q 011696          369 FADQNLLGEGGFGSVYKGYLP-DGR---EVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRR-LLIY  442 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~~-~g~---~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~-~LV~  442 (479)
                      |...++||+|+||+||+|++. +++   .||||.++.... ...++|.+|+++|++++|+||++++|+|.+.+.. ++||
T Consensus        23 ~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~  102 (298)
T 3pls_A           23 THSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVLL  102 (298)
T ss_dssp             EEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEE
T ss_pred             EccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEEE
Confidence            445688999999999999853 232   699999975443 3346799999999999999999999999877765 8999


Q ss_pred             ecCCCCCHHHHHhcC-CcccchhHHHHHHHHHHhhc
Q 011696          443 DYVPNNTLYFHLHGK-WQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~~  477 (479)
                      ||+.+|+|.++++.+ ..+.+....++..-++.++.
T Consensus       103 e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~  138 (298)
T 3pls_A          103 PYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGME  138 (298)
T ss_dssp             CCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHH
T ss_pred             ecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHH
Confidence            999999999999863 23333333333333344433

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.53  E-value=3.6e-14  Score=141.61  Aligned_cols=109  Identities=22%  Similarity=0.316  Sum_probs=85.7

Q ss_pred             HHHhcCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHh--CCCCCccceEEEEEeCC----
Q 011696          363 VKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISR--IHHRHLVSLVGYCISDD----  436 (479)
Q Consensus       363 ~~~~~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~--l~HpNIv~LlG~~~~~~----  436 (479)
                      ....++|...++||+|+||.||+|+. +|+.||||+++.   ...++|.+|++++..  ++|+||++++++|...+    
T Consensus        38 ~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~---~~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~  113 (342)
T 1b6c_B           38 RTIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSS---REERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWT  113 (342)
T ss_dssp             HHHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECG---GGHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCC
T ss_pred             ccccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCc---hhHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccc
Confidence            33456789999999999999999998 689999999863   345678999999988  79999999999999876    


Q ss_pred             eEEEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhh
Q 011696          437 RRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       437 ~~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~  476 (479)
                      ..+|||||+.+|+|.++|+.+ .+.++...++..-++.++
T Consensus       114 ~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~i~~~i~~~l  152 (342)
T 1b6c_B          114 QLWLVSDYHEHGSLFDYLNRY-TVTVEGMIKLALSTASGL  152 (342)
T ss_dssp             CEEEEECCCTTCBHHHHHHHC-CBCHHHHHHHHHHHHHHH
T ss_pred             eeEEEEeecCCCcHHHHHhcc-CccHHHHHHHHHHHHHHH
Confidence            789999999999999999754 333333333333333333

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=99.53  E-value=2.1e-14  Score=140.54  Aligned_cols=91  Identities=20%  Similarity=0.438  Sum_probs=76.6

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      ++|...++||+|+||+||+|+.. +|+.||||+++....  ...++|.+|+++|++++|+||++++|+|.+++..+||||
T Consensus         3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (299)
T 2r3i_A            3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE   82 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEE
Confidence            57888899999999999999864 689999999965432  234679999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCC
Q 011696          444 YVPNNTLYFHLHGKW  458 (479)
Q Consensus       444 y~~~GsL~~~L~~~~  458 (479)
                      |+. |+|.+++....
T Consensus        83 ~~~-~~L~~~~~~~~   96 (299)
T 2r3i_A           83 FLH-QDLKKFMDASA   96 (299)
T ss_dssp             CCS-EEHHHHHHHTT
T ss_pred             ccc-CCHHHHHHhhh
Confidence            998 69999987653

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.53  E-value=1.5e-14  Score=142.57  Aligned_cols=108  Identities=21%  Similarity=0.239  Sum_probs=78.7

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEE------------
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCI------------  433 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~------------  433 (479)
                      ++|...++||+|+||.||+|+.. +|+.||||+++.......++|.+|+++|++++|+||++++++|.            
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~   90 (320)
T 2i6l_A           11 SRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGS   90 (320)
T ss_dssp             TTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC----
T ss_pred             CceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccccccc
Confidence            56788899999999999999875 48899999998665555678999999999999999999999873            


Q ss_pred             --eCCeEEEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhh
Q 011696          434 --SDDRRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       434 --~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~  476 (479)
                        +.+..+|||||+. |+|.++++.+ .+.++...++..-++.++
T Consensus        91 ~~~~~~~~lv~e~~~-~~L~~~~~~~-~~~~~~~~~~~~qi~~~l  133 (320)
T 2i6l_A           91 LTELNSVYIVQEYME-TDLANVLEQG-PLLEEHARLFMYQLLRGL  133 (320)
T ss_dssp             CCSCSEEEEEEECCS-EEHHHHHTTC-CCCHHHHHHHHHHHHHHH
T ss_pred             ccccCceeEEeeccC-CCHHHHhhcC-CccHHHHHHHHHHHHHHH
Confidence              3467799999998 6999988753 233333333333333333

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.53  E-value=1.7e-14  Score=154.07  Aligned_cols=112  Identities=21%  Similarity=0.298  Sum_probs=88.3

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+++...   ....+.|.+|+++|++++|+|||+++++|.+.+..||||
T Consensus       185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVm  264 (543)
T 3c4z_A          185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVM  264 (543)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEE
Confidence            5677778999999999999986 468999999996432   233457999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCC----cccchhHHHHHHHHHHhhcc
Q 011696          443 DYVPNNTLYFHLHGKW----QLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~----~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||.+|+|.++|+...    .+.++....+..-++.++.|
T Consensus       265 E~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~  304 (543)
T 3c4z_A          265 TIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEH  304 (543)
T ss_dssp             CCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHH
T ss_pred             EeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHH
Confidence            9999999999987543    23344444444444444444

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.53  E-value=9.9e-15  Score=151.68  Aligned_cols=112  Identities=21%  Similarity=0.255  Sum_probs=91.4

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeC-----CeE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISD-----DRR  438 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~-----~~~  438 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+++....  ...++|++|+++|++|+|+|||+|+++|...     +..
T Consensus        26 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  105 (432)
T 3n9x_A           26 DNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDEL  105 (432)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCE
T ss_pred             CCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCeE
Confidence            6788889999999999999985 4578899999975332  3346799999999999999999999999876     568


Q ss_pred             EEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          439 LLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      |||||||. |+|.++++.+..+.++....+..-++.++.||
T Consensus       106 ~lv~e~~~-~~L~~~~~~~~~l~~~~~~~i~~qil~aL~~L  145 (432)
T 3n9x_A          106 YIVLEIAD-SDLKKLFKTPIFLTEEHIKTILYNLLLGENFI  145 (432)
T ss_dssp             EEEEECCS-EEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCC-cCHHHHHhccCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999987 59999998776666666666666666666553

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.52  E-value=1.2e-14  Score=144.93  Aligned_cols=111  Identities=25%  Similarity=0.389  Sum_probs=84.8

Q ss_pred             cCccccccccccCccceEEEEe-CCCCE----EEEEEeecCC-CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGRE----VAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~----VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~L  440 (479)
                      ++|...++||+|+||+||+|++ .+|+.    ||+|.+.... ....++|.+|+++|++++|+||++|+|+|. ++..+|
T Consensus        13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~   91 (325)
T 3kex_A           13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQL   91 (325)
T ss_dssp             TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEEE
T ss_pred             hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccEE
Confidence            4677789999999999999985 34443    7888875433 333467999999999999999999999985 566889


Q ss_pred             EEecCCCCCHHHHHhcC-CcccchhHHHHHHHHHHhhcc
Q 011696          441 IYDYVPNNTLYFHLHGK-WQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||||.+|+|.++++.+ ..+.+....++..-++.++.|
T Consensus        92 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~  130 (325)
T 3kex_A           92 VTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYY  130 (325)
T ss_dssp             EEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999864 345555555555445555444

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.52  E-value=1.7e-14  Score=141.40  Aligned_cols=91  Identities=25%  Similarity=0.417  Sum_probs=74.3

Q ss_pred             cCccccccccccCccceEEEEeCCC----CEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeC-CeEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDG----REVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISD-DRRLL  440 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g----~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~-~~~~L  440 (479)
                      .+|...++||+|+||+||+|++.++    ..||||.++.... ...++|.+|+++|++++|+||++++++|.+. +..+|
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~  104 (298)
T 3f66_A           25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV  104 (298)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEE
T ss_pred             eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEE
Confidence            3466778999999999999986332    2589999875443 3346799999999999999999999998654 46789


Q ss_pred             EEecCCCCCHHHHHhcC
Q 011696          441 IYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~  457 (479)
                      |||||.+|+|.++++.+
T Consensus       105 v~e~~~~~~L~~~l~~~  121 (298)
T 3f66_A          105 VLPYMKHGDLRNFIRNE  121 (298)
T ss_dssp             EEECCTTCBHHHHHHCT
T ss_pred             EEeCCCCCCHHHHHHhc
Confidence            99999999999999753

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.52  E-value=6.3e-15  Score=146.90  Aligned_cols=111  Identities=20%  Similarity=0.299  Sum_probs=84.2

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCCCcc-hHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQG-EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~~-~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      ++|...++||+|+||+||+|+.. +|+.||||+++...... ...+.+|+++|++++|+||++++++|.+.+..+|||||
T Consensus         2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (324)
T 3mtl_A            2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY   81 (324)
T ss_dssp             CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence            46888899999999999999864 68899999997544322 23678899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCC-cccchhHHHHHHHHHHhhcc
Q 011696          445 VPNNTLYFHLHGKW-QLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       445 ~~~GsL~~~L~~~~-~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |. |+|.+++.... .+.+.....+..-++.++.|
T Consensus        82 ~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~  115 (324)
T 3mtl_A           82 LD-KDLKQYLDDCGNIINMHNVKLFLFQLLRGLAY  115 (324)
T ss_dssp             CS-EEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             cc-cCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            98 58988887643 24444444444444444433

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.52  E-value=1.9e-14  Score=145.30  Aligned_cols=110  Identities=21%  Similarity=0.260  Sum_probs=84.7

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCc---chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ---GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~---~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      +.|...+.||+|+||+||+|+. .+|+.||||+++.....   ..++|.+|+++|++|+|+|||+++|+|.+++..+|||
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  133 (348)
T 1u5q_A           54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM  133 (348)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence            4477788999999999999985 57889999999754332   2357999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhc-CCcccchhHHHHHHHHHHhhc
Q 011696          443 DYVPNNTLYFHLHG-KWQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       443 Ey~~~GsL~~~L~~-~~~~~~~~~~~~~~l~~~~~~  477 (479)
                      |||. |+|.++++. +..+.+.....+..-++.++.
T Consensus       134 e~~~-g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~  168 (348)
T 1u5q_A          134 EYCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLA  168 (348)
T ss_dssp             ECCS-EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred             ecCC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            9997 688887753 333444433343333344443

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.52  E-value=7.8e-15  Score=147.96  Aligned_cols=113  Identities=18%  Similarity=0.200  Sum_probs=89.0

Q ss_pred             HHhcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCC-----CCCccceEEEEEeCCe
Q 011696          364 KATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIH-----HRHLVSLVGYCISDDR  437 (479)
Q Consensus       364 ~~~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~-----HpNIv~LlG~~~~~~~  437 (479)
                      ...++|...++||+|+||+||+|+. .+|+.||||+++. .....+++.+|+++|++++     |+|||+++|+|...+.
T Consensus        32 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~-~~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~~~  110 (360)
T 3llt_A           32 LLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRN-IKKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMYYDH  110 (360)
T ss_dssp             EETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS-CHHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEETTE
T ss_pred             EecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEecc-chhhhhhhHHHHHHHHHhcccCCCCCCeecccceeeECCe
Confidence            3457899999999999999999986 5688999999963 2233457889999999996     9999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcCCc--ccchhHHHHHHHHHHhhcc
Q 011696          438 RLLIYDYVPNNTLYFHLHGKWQ--LGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       438 ~~LV~Ey~~~GsL~~~L~~~~~--~~~~~~~~~~~l~~~~~~~  478 (479)
                      .+|||||| +|+|.+++..+..  +.+....++..-++.++.|
T Consensus       111 ~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~  152 (360)
T 3llt_A          111 MCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNY  152 (360)
T ss_dssp             EEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999 9999999986543  3344444444444444443

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.52  E-value=4.9e-15  Score=146.30  Aligned_cols=114  Identities=22%  Similarity=0.334  Sum_probs=83.5

Q ss_pred             HhcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCc------chHhHHHHHHHHHhC----CCCCccceEEEEE
Q 011696          365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ------GEREFKAEVEIISRI----HHRHLVSLVGYCI  433 (479)
Q Consensus       365 ~~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~------~~~~f~~Ei~il~~l----~HpNIv~LlG~~~  433 (479)
                      ..++|...++||+|+||.||+|+. .+|+.||||+++.....      +...|.+|+++|.++    +|+||++++|+|.
T Consensus        29 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~~  108 (312)
T 2iwi_A           29 FEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFE  108 (312)
T ss_dssp             ----CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC-
T ss_pred             hhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEEe
Confidence            456789999999999999999985 56889999999654322      234578899999998    8999999999999


Q ss_pred             eCCeEEEEEec-CCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          434 SDDRRLLIYDY-VPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       434 ~~~~~~LV~Ey-~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      +.+..++|||| +.+|+|.+++..+..+.+....++..-++.++.|
T Consensus       109 ~~~~~~~v~e~~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~  154 (312)
T 2iwi_A          109 TQEGFMLVLERPLPAQDLFDYITEKGPLGEGPSRCFFGQVVAAIQH  154 (312)
T ss_dssp             ----CEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCeEEEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999 8999999999876655555555555545554444

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.52  E-value=3.1e-14  Score=141.73  Aligned_cols=108  Identities=22%  Similarity=0.304  Sum_probs=82.5

Q ss_pred             HhcCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhC--CCCCccceEEEEEeC----CeE
Q 011696          365 ATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRI--HHRHLVSLVGYCISD----DRR  438 (479)
Q Consensus       365 ~~~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l--~HpNIv~LlG~~~~~----~~~  438 (479)
                      ..++|...++||+|+||+||+|++ +|+.||||+++..   ...++.+|.+++..+  +|+||++++++|...    +..
T Consensus        35 ~~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~  110 (337)
T 3mdy_A           35 IAKQIQMVKQIGKGRYGEVWMGKW-RGEKVAVKVFFTT---EEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQL  110 (337)
T ss_dssp             HHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEEEGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEE
T ss_pred             cccceEEEeEeecCCCeEEEEEEE-CCceEEEEEEecc---ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCce
Confidence            346788999999999999999998 5899999998632   334566666666655  999999999999987    678


Q ss_pred             EEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhc
Q 011696          439 LLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~  477 (479)
                      +||||||.+|+|.++|+.+ .+.+....++..-++.++.
T Consensus       111 ~lv~e~~~~g~L~~~l~~~-~~~~~~~~~i~~~i~~~l~  148 (337)
T 3mdy_A          111 YLITDYHENGSLYDYLKST-TLDAKSMLKLAYSSVSGLC  148 (337)
T ss_dssp             EEEECCCTTCBHHHHHHHC-CBCHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccCCCcHHHHhhcc-CCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999754 3334444444433344433

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.52  E-value=1.3e-14  Score=144.81  Aligned_cols=113  Identities=16%  Similarity=0.136  Sum_probs=86.7

Q ss_pred             hcCcccc-ccccccCccceEEEEe-CCCCEEEEEEeecCC--CcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEE
Q 011696          366 TDGFADQ-NLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       366 ~~~f~~~-~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~L  440 (479)
                      .+.|... ++||+|+||+||+|+. .+|+.||||+++...  ....++|.+|+++|.++ +|+||++|+++|.+.+..+|
T Consensus        27 ~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~~l  106 (327)
T 3lm5_A           27 NNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEIIL  106 (327)
T ss_dssp             HHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred             hhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeEEE
Confidence            3445554 7899999999999986 468999999997433  33456899999999999 56999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcC--CcccchhHHHHHHHHHHhhcc
Q 011696          441 IYDYVPNNTLYFHLHGK--WQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~--~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||||.+|+|.+++..+  ..+.+....++..-++.++.|
T Consensus       107 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~  146 (327)
T 3lm5_A          107 ILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYY  146 (327)
T ss_dssp             EEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999998654  334444444444444444443

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.52  E-value=1.9e-14  Score=139.86  Aligned_cols=91  Identities=27%  Similarity=0.469  Sum_probs=75.6

Q ss_pred             hcCccccccccccCccceEEEEeCC----CCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLPD----GREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~~----g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~L  440 (479)
                      .++|...++||+|+||+||+|++.+    ++.||||.++.... ...++|.+|+++|++|+|+||++++|+|. ++..++
T Consensus        11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~   89 (281)
T 3cc6_A           11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIE-EEPTWI   89 (281)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEEC-SSSCEE
T ss_pred             ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEc-CCCCEE
Confidence            3568888999999999999998633    23599999975433 34567999999999999999999999985 455789


Q ss_pred             EEecCCCCCHHHHHhcC
Q 011696          441 IYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~  457 (479)
                      ||||+.+|+|.++++.+
T Consensus        90 v~e~~~~~~L~~~l~~~  106 (281)
T 3cc6_A           90 IMELYPYGELGHYLERN  106 (281)
T ss_dssp             EEECCTTCBHHHHHHHH
T ss_pred             EEecCCCCCHHHHHHhc
Confidence            99999999999999753

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.51  E-value=2e-14  Score=144.64  Aligned_cols=114  Identities=19%  Similarity=0.290  Sum_probs=81.6

Q ss_pred             HHhcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCc-----chHhHHHHHHHHHhCCCCCccceEEEEEeCCe
Q 011696          364 KATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ-----GEREFKAEVEIISRIHHRHLVSLVGYCISDDR  437 (479)
Q Consensus       364 ~~~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~-----~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~  437 (479)
                      ...++|...++||+|+||.||+|+. .+|+.||||+++.....     ..++|.+|+++|++|+|+||++++++|.+.+.
T Consensus         7 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   86 (346)
T 1ua2_A            7 SRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSN   86 (346)
T ss_dssp             ------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTC
T ss_pred             HHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCc
Confidence            3446788899999999999999986 45899999999743321     12468999999999999999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcCC-cccchhHHHHHHHHHHhhcc
Q 011696          438 RLLIYDYVPNNTLYFHLHGKW-QLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       438 ~~LV~Ey~~~GsL~~~L~~~~-~~~~~~~~~~~~l~~~~~~~  478 (479)
                      .+||||||.+ +|.+++..+. .+.++...++..-++.++.|
T Consensus        87 ~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~  127 (346)
T 1ua2_A           87 ISLVFDFMET-DLEVIIKDNSLVLTPSHIKAYMLMTLQGLEY  127 (346)
T ss_dssp             CEEEEECCSE-EHHHHHTTCCSSCCSSHHHHHHHHHHHHHHH
T ss_pred             eEEEEEcCCC-CHHHHHHhcCcCCCHHHHHHHHHHHHHHHHH
Confidence            9999999996 7888877542 34444444444444444443

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.50  E-value=2.3e-14  Score=139.56  Aligned_cols=110  Identities=22%  Similarity=0.307  Sum_probs=77.1

Q ss_pred             cCccccccccccCccceEEEEeC--CCC--EEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP--DGR--EVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL  439 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~--~g~--~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~  439 (479)
                      ++|...++||+|+||+||+|++.  +++  .||||+++...   ....++|.+|+++|++++|+||++++|++.+.+ .+
T Consensus        18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~~   96 (291)
T 1u46_A           18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-MK   96 (291)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-CE
T ss_pred             hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-ce
Confidence            56888899999999999999853  333  68999987442   234567999999999999999999999997655 78


Q ss_pred             EEEecCCCCCHHHHHhcC-CcccchhHHHHHHHHHHhhc
Q 011696          440 LIYDYVPNNTLYFHLHGK-WQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~~  477 (479)
                      +||||+.+|+|.++++.+ ..+.++...++..-++.++.
T Consensus        97 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~  135 (291)
T 1u46_A           97 MVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMG  135 (291)
T ss_dssp             EEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHH
T ss_pred             eeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHH
Confidence            999999999999998754 33444444444444444443

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.50  E-value=2.9e-14  Score=146.77  Aligned_cols=106  Identities=16%  Similarity=0.166  Sum_probs=80.1

Q ss_pred             Ccccc-ccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHh-CCCCCccceEEEEEe----CCeEEE
Q 011696          368 GFADQ-NLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISR-IHHRHLVSLVGYCIS----DDRRLL  440 (479)
Q Consensus       368 ~f~~~-~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~-l~HpNIv~LlG~~~~----~~~~~L  440 (479)
                      +|... ++||+|+||+||+|+. .+|+.||||+++.     ..++.+|++++.+ ++|+||++|+++|..    .+..||
T Consensus        62 ~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~-----~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~l  136 (400)
T 1nxk_A           62 DYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLI  136 (400)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEE
T ss_pred             cceeccceeeeccCeEEEEEEECCCCCEEEEEEeCc-----chhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEEE
Confidence            45443 6899999999999986 4688999999963     3568899998855 589999999999875    556889


Q ss_pred             EEecCCCCCHHHHHhcCCc--ccchhHHHHHHHHHHhhcc
Q 011696          441 IYDYVPNNTLYFHLHGKWQ--LGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~~~--~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||||.+|+|+++|+.+..  +.+....++..-++.++.|
T Consensus       137 v~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~  176 (400)
T 1nxk_A          137 VMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQY  176 (400)
T ss_dssp             EEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999987543  4444444444444444444

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.50  E-value=2.9e-14  Score=139.98  Aligned_cols=91  Identities=23%  Similarity=0.377  Sum_probs=74.3

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCC----CcchHhHHHHHHHHHhCCCCCccceEEEEEe--CCeE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG----GQGEREFKAEVEIISRIHHRHLVSLVGYCIS--DDRR  438 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~----~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~--~~~~  438 (479)
                      .++|...++||+|+||.||++.. .+|+.||||+++...    ....++|.+|+++|++|+|+||++++|+|..  .+..
T Consensus         4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (305)
T 2wtk_C            4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM   83 (305)
T ss_dssp             -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred             ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence            36788899999999999999986 468899999996432    2345679999999999999999999999954  4578


Q ss_pred             EEEEecCCCCCHHHHHhcC
Q 011696          439 LLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~  457 (479)
                      +||||||.+| |.+++...
T Consensus        84 ~lv~e~~~~~-l~~~~~~~  101 (305)
T 2wtk_C           84 YMVMEYCVCG-MQEMLDSV  101 (305)
T ss_dssp             EEEEECCSEE-HHHHHHHS
T ss_pred             EEEehhccCC-HHHHHHhC
Confidence            9999999988 77776643

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.50  E-value=1.8e-14  Score=144.09  Aligned_cols=110  Identities=18%  Similarity=0.230  Sum_probs=82.9

Q ss_pred             cCccccccccccCccceEEEEeCCCCEEEEEEeecCCC--------cchHhHHHHHHHHHhCC---------CCCccceE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGG--------QGEREFKAEVEIISRIH---------HRHLVSLV  429 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~--------~~~~~f~~Ei~il~~l~---------HpNIv~Ll  429 (479)
                      ++|...++||+|+||+||+|+. +|+.||||+++....        ...++|.+|+++|++|+         |+|||+|+
T Consensus        20 ~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~   98 (336)
T 2vuw_A           20 EKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLN   98 (336)
T ss_dssp             HHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCEE
T ss_pred             ccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhhc
Confidence            5577789999999999999998 789999999975432        22367999999999886         99999998


Q ss_pred             EEEE------------------------------eCCeEEEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          430 GYCI------------------------------SDDRRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       430 G~~~------------------------------~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      +++.                              +.+..|||||||.+|+|.+++.+ ..+.++....+..-++.++.|
T Consensus        99 ~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~-~~~~~~~~~~i~~qi~~aL~~  176 (336)
T 2vuw_A           99 SVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT-KLSSLATAKSILHQLTASLAV  176 (336)
T ss_dssp             EEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT-TCCCHHHHHHHHHHHHHHHHH
T ss_pred             ceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh-cCCCHHHHHHHHHHHHHHHHH
Confidence            8764                              26788999999999987776644 233444455554444444444

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.50  E-value=2.6e-14  Score=156.83  Aligned_cols=114  Identities=18%  Similarity=0.197  Sum_probs=94.4

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecC---CCcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIG---GGQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~---~~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~L  440 (479)
                      .++|...++||+|+||+||+|+. .+|+.||||+++..   .....+.+++|+++|..+ +|+||++|++++.+.+.+||
T Consensus       340 ~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~l  419 (674)
T 3pfq_A          340 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYF  419 (674)
T ss_dssp             CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEEE
T ss_pred             ccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEEE
Confidence            46788889999999999999986 45788999999743   233456789999999998 79999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          441 IYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      |||||.+|+|+++|+....+.++....+..-++.+|.||
T Consensus       420 V~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~L  458 (674)
T 3pfq_A          420 VMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFL  458 (674)
T ss_dssp             EEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCcCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999998776666666666666666666554

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.49  E-value=2.2e-14  Score=142.41  Aligned_cols=111  Identities=23%  Similarity=0.236  Sum_probs=84.9

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCC-CCCccceEEEEEe--------CC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIH-HRHLVSLVGYCIS--------DD  436 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~-HpNIv~LlG~~~~--------~~  436 (479)
                      .+|...++||+|+||+||+|+. .+|+.||||+++.......++|.+|+++|.+++ |+||++++++|..        ..
T Consensus        28 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~  107 (337)
T 3ll6_A           28 LRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQA  107 (337)
T ss_dssp             EEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSSE
T ss_pred             ceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCCc
Confidence            5688889999999999999985 478899999997665556678999999999995 9999999999953        23


Q ss_pred             eEEEEEecCCCCCHHHHHhc---CCcccchhHHHHHHHHHHhhcc
Q 011696          437 RRLLIYDYVPNNTLYFHLHG---KWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       437 ~~~LV~Ey~~~GsL~~~L~~---~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ..+|||||+. |+|.++|+.   +..+.++...++..-++.++.|
T Consensus       108 ~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~  151 (337)
T 3ll6_A          108 EFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQH  151 (337)
T ss_dssp             EEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHH
Confidence            4689999996 899988864   2334444444444444444433

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.49  E-value=2.3e-14  Score=144.10  Aligned_cols=111  Identities=10%  Similarity=0.093  Sum_probs=80.9

Q ss_pred             cCccccccccccCccceEEEEeC----CCCEEEEEEeecCCCc-----------chHhHHHHHHHHHhCCCCCccceEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP----DGREVAIKQLKIGGGQ-----------GEREFKAEVEIISRIHHRHLVSLVGY  431 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~----~g~~VAVK~l~~~~~~-----------~~~~f~~Ei~il~~l~HpNIv~LlG~  431 (479)
                      ++|...++||+|+||+||+|+..    +++.||||++......           ..++|.+|+.+++.++|+||++++|+
T Consensus        37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~  116 (345)
T 2v62_A           37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS  116 (345)
T ss_dssp             CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred             ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence            56888899999999999999974    5678999998754321           12347889999999999999999999


Q ss_pred             EEe----CCeEEEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          432 CIS----DDRRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       432 ~~~----~~~~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |..    .+..+|||||| +|+|.+++..+..+.+....++..-++.++.|
T Consensus       117 ~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~  166 (345)
T 2v62_A          117 GLTEFKGRSYRFMVMERL-GIDLQKISGQNGTFKKSTVLQLGIRMLDVLEY  166 (345)
T ss_dssp             EEEESSSCEEEEEEEECE-EEEHHHHCBGGGBCCHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCCcEEEEEEecc-CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            998    67889999999 99999999876555555555555555555544

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.49  E-value=3.4e-14  Score=138.91  Aligned_cols=108  Identities=23%  Similarity=0.408  Sum_probs=81.5

Q ss_pred             cCccccccccccCccceEEEEeCCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      ++|...++||+|+||+||+|++.  +.||||+++....  ...+.|.+|+++|++++|+||++++|++ ..+..+|||||
T Consensus        24 ~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~e~  100 (289)
T 3og7_A           24 GQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVTQW  100 (289)
T ss_dssp             TSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEEEC
T ss_pred             cceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEEEe
Confidence            56788899999999999999863  3599999975543  2345799999999999999999999976 55668999999


Q ss_pred             CCCCCHHHHHhcCC-cccchhHHHHHHHHHHhhc
Q 011696          445 VPNNTLYFHLHGKW-QLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       445 ~~~GsL~~~L~~~~-~~~~~~~~~~~~l~~~~~~  477 (479)
                      |.+|+|.++++.+. .+.+....++..-++.++.
T Consensus       101 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~  134 (289)
T 3og7_A          101 CEGSSLYHHLHASETKFEMKKLIDIARQTARGMD  134 (289)
T ss_dssp             CCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Confidence            99999999997543 3333333344333444443

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.49  E-value=7.1e-14  Score=138.93  Aligned_cols=86  Identities=19%  Similarity=0.369  Sum_probs=75.7

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCC-CCCccceEEEEEe--CCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIH-HRHLVSLVGYCIS--DDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~-HpNIv~LlG~~~~--~~~~~LV~  442 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+++.   ...++|.+|+++|++|+ |+||++++++|.+  ....+|||
T Consensus        36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~---~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~  112 (330)
T 3nsz_A           36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKP---VKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVF  112 (330)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS---CCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEE
T ss_pred             CceEEEEEecccCCeEEEEEEECCCCcEEEEEEecc---cchHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEE
Confidence            5688889999999999999985 6789999999863   33568999999999997 9999999999987  56789999


Q ss_pred             ecCCCCCHHHHHh
Q 011696          443 DYVPNNTLYFHLH  455 (479)
Q Consensus       443 Ey~~~GsL~~~L~  455 (479)
                      ||+.+|+|.++++
T Consensus       113 e~~~~~~l~~~~~  125 (330)
T 3nsz_A          113 EHVNNTDFKQLYQ  125 (330)
T ss_dssp             ECCCCCCHHHHGG
T ss_pred             eccCchhHHHHHH
Confidence            9999999988775

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.49  E-value=5.9e-14  Score=141.09  Aligned_cols=111  Identities=19%  Similarity=0.332  Sum_probs=84.8

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeC--------
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISD--------  435 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~--------  435 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||++.....  ....+|++|+++|++++|+||++++++|...        
T Consensus        17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   96 (351)
T 3mi9_A           17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCK   96 (351)
T ss_dssp             GGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC--------
T ss_pred             cceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccCC
Confidence            5688889999999999999986 5789999999864432  2345799999999999999999999999874        


Q ss_pred             CeEEEEEecCCCCCHHHHHhcC-CcccchhHHHHHHHHHHhhcc
Q 011696          436 DRRLLIYDYVPNNTLYFHLHGK-WQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       436 ~~~~LV~Ey~~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      +..+||||||.+ +|.+++... ..+.+....++..-++.++.|
T Consensus        97 ~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~  139 (351)
T 3mi9_A           97 GSIYLVFDFCEH-DLAGLLSNVLVKFTLSEIKRVMQMLLNGLYY  139 (351)
T ss_dssp             CEEEEEEECCSE-EHHHHHHCTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEeccCC-CHHHHHhhccCCCCHHHHHHHHHHHHHHHHH
Confidence            467899999985 777766643 344455444444444444443

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.49  E-value=8.9e-15  Score=149.00  Aligned_cols=91  Identities=11%  Similarity=0.146  Sum_probs=73.2

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecC---CCcchHhHHHHH---HHHHhCCCCCccceE-------EEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIG---GGQGEREFKAEV---EIISRIHHRHLVSLV-------GYC  432 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~---~~~~~~~f~~Ei---~il~~l~HpNIv~Ll-------G~~  432 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+++..   .....+.|.+|+   ++|++++|+|||+++       +++
T Consensus        73 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~~  152 (377)
T 3byv_A           73 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLV  152 (377)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEEE
T ss_pred             ceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhhh
Confidence            5677789999999999999995 56899999999743   233456799999   566667899999998       666


Q ss_pred             EeCC-----------------eEEEEEecCCCCCHHHHHhcCC
Q 011696          433 ISDD-----------------RRLLIYDYVPNNTLYFHLHGKW  458 (479)
Q Consensus       433 ~~~~-----------------~~~LV~Ey~~~GsL~~~L~~~~  458 (479)
                      .+.+                 ..||||||| +|+|.++|+...
T Consensus       153 ~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~  194 (377)
T 3byv_A          153 KDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLL  194 (377)
T ss_dssp             ECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHH
T ss_pred             hccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhcc
Confidence            5543                 278999999 789999998643

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.49  E-value=9.3e-14  Score=136.96  Aligned_cols=112  Identities=21%  Similarity=0.305  Sum_probs=82.8

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC-----cchHhHHHHHHHHHhCC---CCCccceEEEEEeCC
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG-----QGEREFKAEVEIISRIH---HRHLVSLVGYCISDD  436 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~-----~~~~~f~~Ei~il~~l~---HpNIv~LlG~~~~~~  436 (479)
                      .++|...++||+|+||+||+|+. .+|+.||||+++....     ....++.+|+++|++++   |+||++++++|...+
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~   87 (308)
T 3g33_A            8 TSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSR   87 (308)
T ss_dssp             --CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEECC
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeeccC
Confidence            46788899999999999999985 5788999999964321     22346788888877764   999999999998765


Q ss_pred             -----eEEEEEecCCCCCHHHHHhcCCc--ccchhHHHHHHHHHHhhcc
Q 011696          437 -----RRLLIYDYVPNNTLYFHLHGKWQ--LGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       437 -----~~~LV~Ey~~~GsL~~~L~~~~~--~~~~~~~~~~~l~~~~~~~  478 (479)
                           ..+|||||+. |+|.++++....  +.+....++..-++.++.|
T Consensus        88 ~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~  135 (308)
T 3g33_A           88 TDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDF  135 (308)
T ss_dssp             SSSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHH
Confidence                 4789999998 699999987554  4444444444444444443

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.48  E-value=1.1e-14  Score=143.86  Aligned_cols=111  Identities=24%  Similarity=0.366  Sum_probs=87.5

Q ss_pred             HhcCccccccccccCccceEEEEeCCCCEEEEEEeecCC--CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          365 ATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       365 ~~~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ..++|...++||+|+||.||+|.+.+  .||||+++...  ....++|.+|+++|++++|+||++++|+|.+.+..+|||
T Consensus        31 ~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~  108 (319)
T 2y4i_B           31 PFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIIT  108 (319)
T ss_dssp             CCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEEC
T ss_pred             CHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEe
Confidence            34678888999999999999998743  49999997543  233457999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCC-cccchhHHHHHHHHHHhhc
Q 011696          443 DYVPNNTLYFHLHGKW-QLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~-~~~~~~~~~~~~l~~~~~~  477 (479)
                      ||+.+|+|.++++.+. .+.+....++..-++.++.
T Consensus       109 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~  144 (319)
T 2y4i_B          109 SLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMG  144 (319)
T ss_dssp             BCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHH
T ss_pred             ecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999998643 3444444444444444443

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.48  E-value=6.3e-14  Score=139.95  Aligned_cols=111  Identities=25%  Similarity=0.425  Sum_probs=84.4

Q ss_pred             cCccccccccccCccceEEEEe-CCCCE----EEEEEeecCC-CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGRE----VAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~----VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~L  440 (479)
                      ++|...++||+|+||+||+|+. .+|+.    ||+|.++... ....++|.+|+++|++++|+||++++++|...+ .++
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~~   93 (327)
T 3lzb_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQL   93 (327)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EEE
T ss_pred             hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ceE
Confidence            5688889999999999999985 34443    5777775433 345678999999999999999999999998655 789


Q ss_pred             EEecCCCCCHHHHHhcC-CcccchhHHHHHHHHHHhhcc
Q 011696          441 IYDYVPNNTLYFHLHGK-WQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |+||+.+|+|.++++.+ ..+.+....++..-++.++.|
T Consensus        94 v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~  132 (327)
T 3lzb_A           94 ITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNY  132 (327)
T ss_dssp             EECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999763 334444444444444444443

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.48  E-value=2.6e-14  Score=141.71  Aligned_cols=94  Identities=24%  Similarity=0.404  Sum_probs=76.0

Q ss_pred             HhcCccccccccccCccceEEEEe--CCCCEEEEEEeecCCC--cchHhHHHHHHHHHhC---CCCCccceEEEEE----
Q 011696          365 ATDGFADQNLLGEGGFGSVYKGYL--PDGREVAIKQLKIGGG--QGEREFKAEVEIISRI---HHRHLVSLVGYCI----  433 (479)
Q Consensus       365 ~~~~f~~~~~IG~G~fG~Vykg~~--~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l---~HpNIv~LlG~~~----  433 (479)
                      ..++|...++||+|+||+||+|+.  .+|+.||||+++....  ....++.+|+++|+++   +|+||++++|+|.    
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~   88 (326)
T 1blx_A            9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT   88 (326)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred             chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence            457788999999999999999986  4678899999964332  2234688888887776   8999999999997    


Q ss_pred             -eCCeEEEEEecCCCCCHHHHHhcCCc
Q 011696          434 -SDDRRLLIYDYVPNNTLYFHLHGKWQ  459 (479)
Q Consensus       434 -~~~~~~LV~Ey~~~GsL~~~L~~~~~  459 (479)
                       .....+|||||+. |+|.++++....
T Consensus        89 ~~~~~~~lv~e~~~-~~L~~~l~~~~~  114 (326)
T 1blx_A           89 DRETKLTLVFEHVD-QDLTTYLDKVPE  114 (326)
T ss_dssp             SSEEEEEEEEECCS-CBHHHHHHHSCT
T ss_pred             CCCceEEEEEecCC-CCHHHHHHhccc
Confidence             4456789999998 699999886543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.48  E-value=2.4e-14  Score=157.30  Aligned_cols=109  Identities=18%  Similarity=0.293  Sum_probs=82.2

Q ss_pred             cCccccccccccCccceEEEEeC--CCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCe-----E
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP--DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDR-----R  438 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~--~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~-----~  438 (479)
                      ++|...++||+|+||+||+|+..  +|+.||||++..... ...+.|.+|+++|++|+|+|||+++++|...+.     .
T Consensus        80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~  159 (681)
T 2pzi_A           80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVG  159 (681)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred             CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCcee
Confidence            67888899999999999999864  588999999875433 334579999999999999999999999987665     6


Q ss_pred             EEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhc
Q 011696          439 LLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~  477 (479)
                      |||||||.+|+|.++++.  .+.+....++..-++.++.
T Consensus       160 ~lv~E~~~g~~L~~~~~~--~l~~~~~~~~~~qi~~aL~  196 (681)
T 2pzi_A          160 YIVMEYVGGQSLKRSKGQ--KLPVAEAIAYLLEILPALS  196 (681)
T ss_dssp             EEEEECCCCEECC----C--CCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHhC--CCCHHHHHHHHHHHHHHHH
Confidence            999999999999887765  3334444444443444443

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.47  E-value=9.6e-14  Score=136.50  Aligned_cols=107  Identities=16%  Similarity=0.169  Sum_probs=82.6

Q ss_pred             cCcccc-ccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHH-HhCCCCCccceEEEEEe----CCeEE
Q 011696          367 DGFADQ-NLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEII-SRIHHRHLVSLVGYCIS----DDRRL  439 (479)
Q Consensus       367 ~~f~~~-~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il-~~l~HpNIv~LlG~~~~----~~~~~  439 (479)
                      ++|... ++||+|+||.||+++. .+|+.||||+++.     .+.+.+|++++ +.++|+||++++++|..    .+..+
T Consensus        17 ~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-----~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~   91 (299)
T 3m2w_A           17 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL   91 (299)
T ss_dssp             GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred             cchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc-----cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEE
Confidence            445554 7899999999999986 5688999999963     35688999988 55699999999999987    56789


Q ss_pred             EEEecCCCCCHHHHHhcCC--cccchhHHHHHHHHHHhhcc
Q 011696          440 LIYDYVPNNTLYFHLHGKW--QLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~~--~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||||||.+|+|.++++.+.  .+.+....++..-++.++.|
T Consensus        92 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~  132 (299)
T 3m2w_A           92 IVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQY  132 (299)
T ss_dssp             EEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHH
T ss_pred             EEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999998654  34444444444444444443

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.47  E-value=2.5e-14  Score=144.04  Aligned_cols=106  Identities=13%  Similarity=0.107  Sum_probs=82.4

Q ss_pred             cCccccccccccCccceEEEEeC---------CCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccc----------
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP---------DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVS----------  427 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~---------~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~----------  427 (479)
                      ++|...++||+|+||+||+|+..         +++.||||+++..     ++|.+|+++|++++|+|||+          
T Consensus        42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~~  116 (352)
T 2jii_A           42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTPL  116 (352)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCTT
T ss_pred             CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCCc
Confidence            56888899999999999999865         3789999998743     47999999999999999998          


Q ss_pred             -----eEEEEEe-CCeEEEEEecCCCCCHHHHHhcC--CcccchhHHHHHHHHHHhhcc
Q 011696          428 -----LVGYCIS-DDRRLLIYDYVPNNTLYFHLHGK--WQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       428 -----LlG~~~~-~~~~~LV~Ey~~~GsL~~~L~~~--~~~~~~~~~~~~~l~~~~~~~  478 (479)
                           +++++.. ++..+|||||| +|+|.++|+..  ..+.+....++..-++.++.|
T Consensus       117 ~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~  174 (352)
T 2jii_A          117 LAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEF  174 (352)
T ss_dssp             CSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred             cCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHH
Confidence                 7888887 67789999999 99999999875  444444444444444444443

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.47  E-value=8.6e-14  Score=142.16  Aligned_cols=112  Identities=21%  Similarity=0.268  Sum_probs=77.3

Q ss_pred             HhcCccccccccccCccceEEEEe-CCCCEEEEEEeecCC--CcchHhHHHHHHHHHhCC-CCCccceEEEEEeCC--eE
Q 011696          365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIH-HRHLVSLVGYCISDD--RR  438 (479)
Q Consensus       365 ~~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~-HpNIv~LlG~~~~~~--~~  438 (479)
                      ..++|...++||+|+||+||+|+. .+|+.||||++....  ..+.+++.+|+.+|.+++ |+|||+|+++|...+  ..
T Consensus         7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~   86 (388)
T 3oz6_A            7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDV   86 (388)
T ss_dssp             HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCE
T ss_pred             ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEE
Confidence            346788999999999999999985 568999999986432  334457899999999997 999999999998655  67


Q ss_pred             EEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          439 LLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||||||. |+|.++++.+ .+.......+..-++.++.|
T Consensus        87 ~lv~e~~~-~~L~~~~~~~-~~~~~~~~~i~~qi~~~L~~  124 (388)
T 3oz6_A           87 YLVFDYME-TDLHAVIRAN-ILEPVHKQYVVYQLIKVIKY  124 (388)
T ss_dssp             EEEEECCS-EEHHHHHHHT-CCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEecccC-cCHHHHHHcC-CCCHHHHHHHHHHHHHHHHH
Confidence            99999998 6898888754 33333333333334444433

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.47  E-value=7.2e-14  Score=138.06  Aligned_cols=113  Identities=17%  Similarity=0.215  Sum_probs=89.9

Q ss_pred             HhcCccccccccccCccceEEEEeCCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCC--CCCccceEEEEEeCCeEEE
Q 011696          365 ATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGG--QGEREFKAEVEIISRIH--HRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       365 ~~~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~--HpNIv~LlG~~~~~~~~~L  440 (479)
                      ..++|...++||+|+||.||++...+|+.||||+++....  ...++|.+|+++|.+|+  |+||++++++|.+++..+|
T Consensus        26 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~l  105 (313)
T 3cek_A           26 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM  105 (313)
T ss_dssp             TTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEE
T ss_pred             ccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEE
Confidence            3466888899999999999999988899999999975433  33467999999999997  5999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          441 IYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||| +.+|+|.+++..+..+.+.....+..-++.++.|
T Consensus       106 v~e-~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~  142 (313)
T 3cek_A          106 VME-CGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHT  142 (313)
T ss_dssp             EEC-CCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             EEe-cCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            999 6789999999876655444444444444444433

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.47  E-value=8.5e-14  Score=152.26  Aligned_cols=113  Identities=21%  Similarity=0.235  Sum_probs=85.5

Q ss_pred             HhcCccccccccccCccceEEEEeCC----CCEEEEEEeecCCCc-chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEE
Q 011696          365 ATDGFADQNLLGEGGFGSVYKGYLPD----GREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL  439 (479)
Q Consensus       365 ~~~~f~~~~~IG~G~fG~Vykg~~~~----g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~  439 (479)
                      ..++|...++||+|+||+||+|++..    +..||||+++..... ..++|.+|+.+|++++|+|||+++|+|. ++..+
T Consensus       388 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~  466 (656)
T 2j0j_A          388 QRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVW  466 (656)
T ss_dssp             CGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCE
T ss_pred             ccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCceE
Confidence            34668888999999999999998632    457999998754433 3467999999999999999999999984 56689


Q ss_pred             EEEecCCCCCHHHHHhcCC-cccchhHHHHHHHHHHhhcc
Q 011696          440 LIYDYVPNNTLYFHLHGKW-QLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~~-~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||||||.+|+|.++|+.+. .+.+.....+..-++.++.|
T Consensus       467 lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~  506 (656)
T 2j0j_A          467 IIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAY  506 (656)
T ss_dssp             EEEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999998543 33344434443444444443

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.47  E-value=1.3e-13  Score=134.61  Aligned_cols=109  Identities=15%  Similarity=0.165  Sum_probs=87.1

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEEEEec
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+++...  ..++|.+|++++.++ +|.||+++++++.+.+..+|||||
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~   87 (298)
T 1csn_A           10 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDL   87 (298)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEEC
T ss_pred             cceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEEe
Confidence            5688889999999999999984 578899999986432  345799999999999 899999999999999999999999


Q ss_pred             CCCCCHHHHHhcCC-cccchhHHHHHHHHHHhhcc
Q 011696          445 VPNNTLYFHLHGKW-QLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       445 ~~~GsL~~~L~~~~-~~~~~~~~~~~~l~~~~~~~  478 (479)
                      + +|+|.++++... .+.+....++..-++.++.|
T Consensus        88 ~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~  121 (298)
T 1csn_A           88 L-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQS  121 (298)
T ss_dssp             C-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             c-CCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence            9 999999998643 34444444444444444433

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.47  E-value=3.9e-14  Score=144.00  Aligned_cols=110  Identities=18%  Similarity=0.237  Sum_probs=77.9

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCC------e
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDD------R  437 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~------~  437 (479)
                      ++|...+.||+|+||.||+|+. .+|+.||||++.....  ...++|.+|+++|++|+|+||++++++|...+      .
T Consensus        25 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~  104 (367)
T 1cm8_A           25 AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTD  104 (367)
T ss_dssp             SSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCC
T ss_pred             ceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCce
Confidence            5688889999999999999986 5689999999964332  23457999999999999999999999998653      4


Q ss_pred             EEEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          438 RLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       438 ~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      .||||||| +++|.++++.+ .+.++....+..-++.++.|
T Consensus       105 ~~lv~e~~-~~~L~~~~~~~-~l~~~~~~~~~~qi~~~L~~  143 (367)
T 1cm8_A          105 FYLVMPFM-GTDLGKLMKHE-KLGEDRIQFLVYQMLKGLRY  143 (367)
T ss_dssp             CEEEEECC-SEEHHHHHHHC-CCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecC-CCCHHHHHhcC-CCCHHHHHHHHHHHHHHHHH
Confidence            59999999 89999988753 33344444444444444433

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.47  E-value=4.1e-14  Score=143.30  Aligned_cols=112  Identities=13%  Similarity=0.117  Sum_probs=82.5

Q ss_pred             hcCccccccccccCccceEEEEeCC------CCEEEEEEeecCCCcc-----------hHhHHHHHHHHHhCCCCCccce
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLPD------GREVAIKQLKIGGGQG-----------EREFKAEVEIISRIHHRHLVSL  428 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~~------g~~VAVK~l~~~~~~~-----------~~~f~~Ei~il~~l~HpNIv~L  428 (479)
                      .++|...++||+|+||+||+|.+.+      ++.||||++.......           ...+++|+.++++++|+||+++
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~  113 (364)
T 3op5_A           34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY  113 (364)
T ss_dssp             CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred             CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence            3568888999999999999998754      4689999987543211           1235567778888999999999


Q ss_pred             EEEEEeC----CeEEEEEecCCCCCHHHHHhcC-CcccchhHHHHHHHHHHhhcc
Q 011696          429 VGYCISD----DRRLLIYDYVPNNTLYFHLHGK-WQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       429 lG~~~~~----~~~~LV~Ey~~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      +|+|...    ...||||||| +|+|.++++.+ ..+.+....++..-++.++.|
T Consensus       114 ~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~  167 (364)
T 3op5_A          114 WGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAKRFSRKTVLQLSLRILDILEY  167 (364)
T ss_dssp             EEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             EeeeeeccCCcceEEEEEeCC-CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence            9999875    4478999999 99999999764 345555555555555555544

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.47  E-value=1.2e-13  Score=138.93  Aligned_cols=91  Identities=26%  Similarity=0.372  Sum_probs=64.6

Q ss_pred             HHHHHHhcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCe-
Q 011696          360 EELVKATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDR-  437 (479)
Q Consensus       360 eel~~~~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~-  437 (479)
                      ++.....++|...++||+|+||+||+|+. .+|+.||||++.... ...+++.+|++.|++++|+||++|+++|...+. 
T Consensus        16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~   94 (360)
T 3e3p_A           16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDP-RFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGER   94 (360)
T ss_dssp             HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCT-TCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSS
T ss_pred             hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCc-cccHHHHHHHHHHHhcCCCCcccHHHhhhccccc
Confidence            45566778999999999999999999986 468899999986432 334568889999999999999999999976443 


Q ss_pred             ------EEEEEecCCCCCHHH
Q 011696          438 ------RLLIYDYVPNNTLYF  452 (479)
Q Consensus       438 ------~~LV~Ey~~~GsL~~  452 (479)
                            .+||||||.++ |.+
T Consensus        95 ~~~~~~~~lv~e~~~~~-l~~  114 (360)
T 3e3p_A           95 DRRDIYLNVVMEYVPDT-LHR  114 (360)
T ss_dssp             CTTCEEEEEEEECCSCB-HHH
T ss_pred             cccceeEEEEeeccccc-HHH
Confidence                  78999999975 443

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.46  E-value=1e-13  Score=134.87  Aligned_cols=112  Identities=14%  Similarity=0.169  Sum_probs=80.8

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCc-chHh-HHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ-GERE-FKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~-~~~~-f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      .++|...++||+|+||+||+|.. .+|+.||||+++..... ...+ +.+|..+++.++|+||++++|+|.+++..+|||
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~   85 (290)
T 3fme_A            6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM   85 (290)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEE
T ss_pred             HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEE
Confidence            35688889999999999999986 57889999999754332 2233 555556688899999999999999999999999


Q ss_pred             ecCCCCCHHHHHhc----CCcccchhHHHHHHHHHHhhcc
Q 011696          443 DYVPNNTLYFHLHG----KWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       443 Ey~~~GsL~~~L~~----~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||. |+|.++++.    +..+.+....++..-++.++.|
T Consensus        86 e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~  124 (290)
T 3fme_A           86 ELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEH  124 (290)
T ss_dssp             ECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             ehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            9998 588777653    2334444444444444444433

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.46  E-value=7.7e-14  Score=142.36  Aligned_cols=110  Identities=23%  Similarity=0.330  Sum_probs=80.4

Q ss_pred             HHhcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeC-------
Q 011696          364 KATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISD-------  435 (479)
Q Consensus       364 ~~~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~-------  435 (479)
                      ...++|...++||+|+||+||+|+. .+|+.||||+++...    +.+.+|+++|++|+|+|||+|+++|...       
T Consensus         4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~----~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~   79 (383)
T 3eb0_A            4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDP----RYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKP   79 (383)
T ss_dssp             --CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHTTCCCTTBCCEEEEEEEC-------
T ss_pred             cccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCc----chHHHHHHHHHHcCCCCccchhheeeecCcccccc
Confidence            4457788999999999999999985 578999999986432    2345899999999999999999999543       


Q ss_pred             -------------------------------CeEEEEEecCCCCCHHHHHhc----CCcccchhHHHHHHHHHHhhcc
Q 011696          436 -------------------------------DRRLLIYDYVPNNTLYFHLHG----KWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       436 -------------------------------~~~~LV~Ey~~~GsL~~~L~~----~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                                                     ...+||||||. |+|.++|+.    +..+.+....++..-++.++.|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~  156 (383)
T 3eb0_A           80 PQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGF  156 (383)
T ss_dssp             ------------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence                                           33789999999 577766653    3444455555555444554444

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.46  E-value=5.1e-14  Score=147.82  Aligned_cols=90  Identities=20%  Similarity=0.313  Sum_probs=73.5

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecC--CCcchHhHHHHHHHHHhCCCCCccceEEEEEeCC------
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIG--GGQGEREFKAEVEIISRIHHRHLVSLVGYCISDD------  436 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~--~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~------  436 (479)
                      .++|...++||+|+||+||+|+. .+|+.||||+++..  .....+++.+|+++|++++|+|||+|+++|...+      
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  140 (464)
T 3ttj_A           61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ  140 (464)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred             cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence            46788889999999999999985 46889999999743  2234567999999999999999999999997553      


Q ss_pred             eEEEEEecCCCCCHHHHHhc
Q 011696          437 RRLLIYDYVPNNTLYFHLHG  456 (479)
Q Consensus       437 ~~~LV~Ey~~~GsL~~~L~~  456 (479)
                      ..|||||||.++ |.++++.
T Consensus       141 ~~~lv~E~~~~~-l~~~~~~  159 (464)
T 3ttj_A          141 DVYLVMELMDAN-LCQVIQM  159 (464)
T ss_dssp             EEEEEEECCSEE-HHHHHTS
T ss_pred             eEEEEEeCCCCC-HHHHHhh
Confidence            569999999875 6555543

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.45  E-value=1.7e-13  Score=136.14  Aligned_cols=88  Identities=15%  Similarity=0.331  Sum_probs=72.3

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC-cchHhHHHHHH-HHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG-QGEREFKAEVE-IISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~-~~~~~f~~Ei~-il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      ++|...++||+|+||.||+|.. .+|+.||||+++.... ...+++++|+. +++.++|+||++++|+|.+.+..+||||
T Consensus        22 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~e  101 (327)
T 3aln_A           22 EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICME  101 (327)
T ss_dssp             CSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             HHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEEe
Confidence            5677789999999999999987 4688999999975543 23346777776 7777899999999999999999999999


Q ss_pred             cCCCCCHHHHHh
Q 011696          444 YVPNNTLYFHLH  455 (479)
Q Consensus       444 y~~~GsL~~~L~  455 (479)
                      ||.+ +|.+++.
T Consensus       102 ~~~~-~l~~~~~  112 (327)
T 3aln_A          102 LMST-SFDKFYK  112 (327)
T ss_dssp             CCSE-EHHHHHH
T ss_pred             ecCC-ChHHHHH
Confidence            9995 7777665

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.45  E-value=1.1e-13  Score=138.72  Aligned_cols=109  Identities=20%  Similarity=0.226  Sum_probs=83.6

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeC-----CeEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISD-----DRRL  439 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~-----~~~~  439 (479)
                      ++|...++||+|+||+||+|+.. +|+.||||+++.... ...++|.+|+++|++++|+||++++|+|...     +..+
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   90 (353)
T 2b9h_A           11 SDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEVY   90 (353)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCEE
T ss_pred             cceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceEE
Confidence            57888899999999999999864 688999999974433 2345799999999999999999999998764     5689


Q ss_pred             EEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhc
Q 011696          440 LIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~  477 (479)
                      |||||+. |+|.+++..+ .+.++...++..-++.++.
T Consensus        91 lv~e~~~-~~L~~~~~~~-~~~~~~~~~~~~qi~~~L~  126 (353)
T 2b9h_A           91 IIQELMQ-TDLHRVISTQ-MLSDDHIQYFIYQTLRAVK  126 (353)
T ss_dssp             EEECCCS-EEHHHHHHHC-CCCHHHHHHHHHHHHHHHH
T ss_pred             EEEeccC-ccHHHHHhhc-CCCHHHHHHHHHHHHHHHH
Confidence            9999998 6899888753 2334444444433444433

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.44  E-value=2.2e-13  Score=135.68  Aligned_cols=88  Identities=30%  Similarity=0.469  Sum_probs=70.3

Q ss_pred             cCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHH--HHhCCCCCccceEEEEEe-----CCeEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEI--ISRIHHRHLVSLVGYCIS-----DDRRL  439 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~i--l~~l~HpNIv~LlG~~~~-----~~~~~  439 (479)
                      ++|...++||+|+||+||+|++ +|+.||||+++..   ..++|.+|.++  +..++|+||+++++++..     ....+
T Consensus        13 ~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~   88 (336)
T 3g2f_A           13 DNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFA---NRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYL   88 (336)
T ss_dssp             TSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEE
T ss_pred             HHhheeeecccCCCeEEEEEEE-CCeEEEEEEeecc---chhhHHHHHHHHHHHhccCcchhhheecccccccCCCceEE
Confidence            5788889999999999999987 7899999999743   23455555555  445899999999997653     22468


Q ss_pred             EEEecCCCCCHHHHHhcCC
Q 011696          440 LIYDYVPNNTLYFHLHGKW  458 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~~  458 (479)
                      ||||||.+|+|.++|+.+.
T Consensus        89 lv~e~~~~g~L~~~l~~~~  107 (336)
T 3g2f_A           89 LVMEYYPNGSLXKYLSLHT  107 (336)
T ss_dssp             EEECCCTTCBHHHHHHHCC
T ss_pred             EEEecCCCCcHHHHHhhcc
Confidence            9999999999999997543

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.44  E-value=1.5e-13  Score=139.63  Aligned_cols=89  Identities=17%  Similarity=0.271  Sum_probs=74.7

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCC------e
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDD------R  437 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~------~  437 (479)
                      ++|...++||+|+||.||+|.. .+|+.||||+++....  ...++|.+|+++|++++|+||++++++|...+      .
T Consensus        25 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~  104 (371)
T 2xrw_A           25 KRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQD  104 (371)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCCE
T ss_pred             hheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccccccc
Confidence            5788889999999999999985 4688999999975432  33457999999999999999999999998665      6


Q ss_pred             EEEEEecCCCCCHHHHHhc
Q 011696          438 RLLIYDYVPNNTLYFHLHG  456 (479)
Q Consensus       438 ~~LV~Ey~~~GsL~~~L~~  456 (479)
                      .+||||||.+ +|.+++..
T Consensus       105 ~~lv~e~~~~-~l~~~~~~  122 (371)
T 2xrw_A          105 VYIVMELMDA-NLCQVIQM  122 (371)
T ss_dssp             EEEEEECCSE-EHHHHHHS
T ss_pred             eEEEEEcCCC-CHHHHHhh
Confidence            7999999985 78887764

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.44  E-value=5.2e-14  Score=139.96  Aligned_cols=114  Identities=22%  Similarity=0.301  Sum_probs=90.4

Q ss_pred             HhcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCc------chHhHHHHHHHHHhCC--CCCccceEEEEEeC
Q 011696          365 ATDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ------GEREFKAEVEIISRIH--HRHLVSLVGYCISD  435 (479)
Q Consensus       365 ~~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~------~~~~f~~Ei~il~~l~--HpNIv~LlG~~~~~  435 (479)
                      ..++|...++||+|+||.||+|+. .+|+.||||+++.....      ..++|.+|+++|++++  |+||++++++|.+.
T Consensus        41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~  120 (320)
T 3a99_A           41 LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERP  120 (320)
T ss_dssp             CTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECS
T ss_pred             ccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecC
Confidence            456788899999999999999985 56889999999754322      2346889999999996  59999999999999


Q ss_pred             CeEEEEEecCCC-CCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          436 DRRLLIYDYVPN-NTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       436 ~~~~LV~Ey~~~-GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      +..+|||||+.+ |+|.+++..+..+.++...++..-++.++.|
T Consensus       121 ~~~~lv~e~~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~  164 (320)
T 3a99_A          121 DSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRH  164 (320)
T ss_dssp             SEEEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEEcCCCCccHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999987 9999999876655555555554444444443

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.44  E-value=1.5e-13  Score=139.09  Aligned_cols=111  Identities=19%  Similarity=0.222  Sum_probs=84.4

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCc-chHhHHHHHHHHHhCCCCCccceEEEEEeC-----CeE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISD-----DRR  438 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~-----~~~  438 (479)
                      .++|...++||+|+||+||+|+. .+++.||||+++..... ..++|++|+++|++|+|+||++++++|...     ...
T Consensus        26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~  105 (364)
T 3qyz_A           26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV  105 (364)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred             cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence            35688889999999999999985 46788999999754333 336799999999999999999999999765     367


Q ss_pred             EEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          439 LLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||||||+. |+|.+++..+. +.++...++..-++.++.|
T Consensus       106 ~iv~e~~~-~~L~~~l~~~~-~~~~~~~~i~~qi~~aL~~  143 (364)
T 3qyz_A          106 YIVQDLME-TDLYKLLKTQH-LSNDHICYFLYQILRGLKY  143 (364)
T ss_dssp             EEEEECCS-EEHHHHHHHCC-CCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcccC-cCHHHHHHhCC-CCHHHHHHHHHHHHHHHHH
Confidence            99999998 58998887542 3444444444444444433

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.43  E-value=6.6e-14  Score=142.38  Aligned_cols=110  Identities=15%  Similarity=0.222  Sum_probs=76.1

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeC------Ce
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISD------DR  437 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~------~~  437 (479)
                      ++|...+.||+|+||.||+|.. .+|+.||||+++....  ...++|.+|+++|++|+|+||++++++|...      +.
T Consensus        29 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~~  108 (367)
T 2fst_X           29 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFND  108 (367)
T ss_dssp             TTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCC
T ss_pred             CceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCCe
Confidence            6788889999999999999984 5688999999965332  3346799999999999999999999999754      55


Q ss_pred             EEEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          438 RLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       438 ~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      .|||+||| +|+|.++++.+ .+.++....+..-++.++.|
T Consensus       109 ~~lv~e~~-~~~L~~~~~~~-~l~~~~~~~i~~qi~~aL~~  147 (367)
T 2fst_X          109 VYLVTHLM-GADLNNIVKCQ-KLTDDHVQFLIYQILRGLKY  147 (367)
T ss_dssp             CEEEEECC-CEECC-----C-CCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccc-CCCHHHHHhcC-CCCHHHHHHHHHHHHHHHHH
Confidence            79999999 78998887652 34444444444444444433

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.43  E-value=1.3e-13  Score=140.06  Aligned_cols=108  Identities=15%  Similarity=0.199  Sum_probs=82.7

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCc--chHhHHHHHHHHHhCCCCCccceEEEEEeCCeE-----
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHHRHLVSLVGYCISDDRR-----  438 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~-----  438 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+++.....  ..++|.+|+++|++++|+||++++++|...+..     
T Consensus        42 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~  121 (371)
T 4exu_A           42 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYD  121 (371)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCCC
T ss_pred             ccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCccccee
Confidence            5788889999999999999985 46889999999754332  245799999999999999999999999877654     


Q ss_pred             -EEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhc
Q 011696          439 -LLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       439 -~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~  477 (479)
                       +||||||. |+|.+++..+  +.+....++..-++.++.
T Consensus       122 ~~lv~e~~~-~~l~~~~~~~--~~~~~~~~i~~qi~~aL~  158 (371)
T 4exu_A          122 FYLVMPFMQ-TDLQKIMGME--FSEEKIQYLVYQMLKGLK  158 (371)
T ss_dssp             CEEEEECCC-EEHHHHTTSC--CCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEcccc-ccHHHHhhcC--CCHHHHHHHHHHHHHHHH
Confidence             99999998 6888877543  333333333333344433

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.43  E-value=1.8e-13  Score=140.72  Aligned_cols=81  Identities=26%  Similarity=0.483  Sum_probs=63.2

Q ss_pred             cccccccCccceEEEEeC---CCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEe--CCeEEEEEecCC
Q 011696          372 QNLLGEGGFGSVYKGYLP---DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIS--DDRRLLIYDYVP  446 (479)
Q Consensus       372 ~~~IG~G~fG~Vykg~~~---~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~--~~~~~LV~Ey~~  446 (479)
                      +++||+|+||+||+|++.   +++.||||+++...  ..++|.+|+++|++|+|+|||+|+++|..  ++..+||||||.
T Consensus        26 g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv~e~~~  103 (405)
T 3rgf_A           26 GCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE  103 (405)
T ss_dssp             SCCCC-----EEEEEEESSSSCCCCEEEEECSSSS--CCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEEEECCS
T ss_pred             CcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCC--CCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEEEeCCC
Confidence            468999999999999864   47889999996432  23579999999999999999999999975  567899999998


Q ss_pred             CCCHHHHHh
Q 011696          447 NNTLYFHLH  455 (479)
Q Consensus       447 ~GsL~~~L~  455 (479)
                      + +|++++.
T Consensus       104 ~-~l~~~~~  111 (405)
T 3rgf_A          104 H-DLWHIIK  111 (405)
T ss_dssp             E-EHHHHHH
T ss_pred             C-CHHHHHH
Confidence            4 7877765

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.42  E-value=1.4e-13  Score=142.59  Aligned_cols=107  Identities=29%  Similarity=0.397  Sum_probs=77.3

Q ss_pred             cCccccccccccCccceEEEEeC-CCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeC----C--eEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISD----D--RRL  439 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~----~--~~~  439 (479)
                      .+|...++||+|+||+||+|++. +|+.||||++...    .+.+.+|+++|++|+|+|||+|+++|...    +  ..+
T Consensus        54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~----~~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~  129 (420)
T 1j1b_A           54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD----KRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN  129 (420)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC----TTSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEE
T ss_pred             ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEeccc----chhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEE
Confidence            35777899999999999999874 5899999998643    23455899999999999999999998642    2  356


Q ss_pred             EEEecCCCCCHHHHHh----cCCcccchhHHHHHHHHHHhhcc
Q 011696          440 LIYDYVPNNTLYFHLH----GKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~----~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||||||.+ +|+++++    .+..+.+.+..++..-++.+|.|
T Consensus       130 lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~  171 (420)
T 1j1b_A          130 LVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAY  171 (420)
T ss_dssp             EEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             eehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHH
Confidence            89999996 5555443    23334444444444444444444

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.42  E-value=4.1e-13  Score=134.56  Aligned_cols=107  Identities=16%  Similarity=0.171  Sum_probs=76.8

Q ss_pred             cCccc-cccccccCccceEEEEeC-CCCEEEEEEeecCCCcchHhHHHHH-HHHHhCCCCCccceEEEEEe----CCeEE
Q 011696          367 DGFAD-QNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEV-EIISRIHHRHLVSLVGYCIS----DDRRL  439 (479)
Q Consensus       367 ~~f~~-~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei-~il~~l~HpNIv~LlG~~~~----~~~~~  439 (479)
                      ++|.. .++||+|+||+||+|+.. +|+.||||+++..     .++.+|+ ..+..++|+||++++++|..    .+..+
T Consensus        28 ~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~  102 (336)
T 3fhr_A           28 DDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS-----PKARQEVDHHWQASGGPHIVCILDVYENMHHGKRCLL  102 (336)
T ss_dssp             GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred             ceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc-----HHHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceEE
Confidence            56776 457999999999999864 6899999999642     2233333 44667799999999999976    34578


Q ss_pred             EEEecCCCCCHHHHHhcCCc--ccchhHHHHHHHHHHhhcc
Q 011696          440 LIYDYVPNNTLYFHLHGKWQ--LGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~~~--~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||||||.+|+|.++++.+..  +.+....++..-++.++.|
T Consensus       103 lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~  143 (336)
T 3fhr_A          103 IIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQF  143 (336)
T ss_dssp             EEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHH
T ss_pred             EEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999986543  3444444444444444443

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.41  E-value=5.1e-14  Score=153.21  Aligned_cols=112  Identities=22%  Similarity=0.220  Sum_probs=85.3

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEe------CCeE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCIS------DDRR  438 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~------~~~~  438 (479)
                      ++|...++||+|+||.||+|.. .+|+.||||+++.... ...++|.+|+++|++|+|+|||+++++|..      ++..
T Consensus        14 grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~~   93 (676)
T 3qa8_A           14 GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLP   93 (676)
T ss_dssp             ---CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSSC
T ss_pred             CCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCeE
Confidence            5788899999999999999986 4688999999875433 334579999999999999999999999865      5677


Q ss_pred             EEEEecCCCCCHHHHHhcCC---cccchhHHHHHHHHHHhhcc
Q 011696          439 LLIYDYVPNNTLYFHLHGKW---QLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~~---~~~~~~~~~~~~l~~~~~~~  478 (479)
                      +||||||.+|+|.++++...   .+.+....++..-++.++.|
T Consensus        94 ~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~y  136 (676)
T 3qa8_A           94 LLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRY  136 (676)
T ss_dssp             CCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHH
Confidence            89999999999999998643   24444444444444444433

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.41  E-value=5.2e-13  Score=131.68  Aligned_cols=110  Identities=13%  Similarity=0.199  Sum_probs=72.3

Q ss_pred             hcCccccccccccCccceEEEEeC-CCCEEEEEEeecCCCcc-hHh-HHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQG-ERE-FKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~~-~~~-f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      .++|...++||+|+||.||+|+.. +|+.||||+++...... ..+ +.++..+++.++|+||++++|+|.+.+..+|||
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~  103 (318)
T 2dyl_A           24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAM  103 (318)
T ss_dssp             GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEE
Confidence            356788899999999999999874 68999999997654332 233 555556788889999999999999999999999


Q ss_pred             ecCCCCCHHHHHhc-CCcccchhHHHHHHHHHHhh
Q 011696          443 DYVPNNTLYFHLHG-KWQLGFDIRNHNNGLLILTV  476 (479)
Q Consensus       443 Ey~~~GsL~~~L~~-~~~~~~~~~~~~~~l~~~~~  476 (479)
                      ||| ++.|..++.. +..+.++...++..-++.++
T Consensus       104 e~~-~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l  137 (318)
T 2dyl_A          104 ELM-GTCAEKLKKRMQGPIPERILGKMTVAIVKAL  137 (318)
T ss_dssp             CCC-SEEHHHHHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred             ecc-CCcHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence            999 4445444332 23333444334433333333

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.41  E-value=2.7e-13  Score=134.56  Aligned_cols=110  Identities=16%  Similarity=0.238  Sum_probs=84.9

Q ss_pred             cCccccccccccCccceEEEEe--CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCC------ccceEEEEEeCCeE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL--PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRH------LVSLVGYCISDDRR  438 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~--~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpN------Iv~LlG~~~~~~~~  438 (479)
                      ++|...++||+|+||+||+|..  .+|+.||||+++.. ....+++.+|+++|++++|.|      |++++++|.+.+..
T Consensus        14 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~   92 (339)
T 1z57_A           14 ARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV-DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHI   92 (339)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTEE
T ss_pred             CceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC-CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCcE
Confidence            5688889999999999999985  36789999999642 233467999999999887765      99999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCCc--ccchhHHHHHHHHHHhhcc
Q 011696          439 LLIYDYVPNNTLYFHLHGKWQ--LGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~~~--~~~~~~~~~~~l~~~~~~~  478 (479)
                      +|||||| +|+|.+++..+..  +.++...++..-++.++.|
T Consensus        93 ~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~  133 (339)
T 1z57_A           93 CIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNF  133 (339)
T ss_dssp             EEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence            9999999 9999999986653  3333344444444444433

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.41  E-value=2e-13  Score=137.47  Aligned_cols=89  Identities=18%  Similarity=0.280  Sum_probs=74.5

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCc--chHhHHHHHHHHHhCCCCCccceEEEEEeCCe------
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHHRHLVSLVGYCISDDR------  437 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~------  437 (479)
                      ++|...+.||+|+||.||+|+. .+|+.||||+++.....  ..++|.+|+++|++++|+||++++++|...+.      
T Consensus        24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~  103 (353)
T 3coi_A           24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYD  103 (353)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCC
T ss_pred             ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEeccccccccee
Confidence            5678889999999999999986 46889999999754322  24579999999999999999999999987654      


Q ss_pred             EEEEEecCCCCCHHHHHhc
Q 011696          438 RLLIYDYVPNNTLYFHLHG  456 (479)
Q Consensus       438 ~~LV~Ey~~~GsL~~~L~~  456 (479)
                      .+|||||+. |+|.+++..
T Consensus       104 ~~lv~e~~~-~~l~~~~~~  121 (353)
T 3coi_A          104 FYLVMPFMQ-TDLQKIMGL  121 (353)
T ss_dssp             CEEEEECCS-EEGGGTTTS
T ss_pred             EEEEecccc-CCHHHHhcC
Confidence            499999998 688877754

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.41  E-value=4.4e-13  Score=139.35  Aligned_cols=86  Identities=19%  Similarity=0.174  Sum_probs=73.0

Q ss_pred             ccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEEEEecCCC
Q 011696          369 FADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYDYVPN  447 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~LV~Ey~~~  447 (479)
                      |...++||+|+||+||++...+|+.||||++...   ..+.+.+|+++|.++ +|+|||++++++.+++..+||||||. 
T Consensus        17 ~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~-   92 (434)
T 2rio_A           17 VVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID---FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN-   92 (434)
T ss_dssp             EEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG---GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS-
T ss_pred             eeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH---HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC-
Confidence            4456889999999998766668999999998642   345689999999986 89999999999999999999999995 


Q ss_pred             CCHHHHHhcCC
Q 011696          448 NTLYFHLHGKW  458 (479)
Q Consensus       448 GsL~~~L~~~~  458 (479)
                      |+|.++|..+.
T Consensus        93 gsL~~~l~~~~  103 (434)
T 2rio_A           93 LNLQDLVESKN  103 (434)
T ss_dssp             EEHHHHHHTC-
T ss_pred             CCHHHHHhccC
Confidence            79999998654

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.40  E-value=9.8e-13  Score=138.71  Aligned_cols=110  Identities=19%  Similarity=0.224  Sum_probs=85.0

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCC-CCccceEEEEEeCCeEEEEEec
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHH-RHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~H-pNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+++....  .++|++|+++|+.|+| .||..+..++.+.+..+|||||
T Consensus         7 ~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme~   84 (483)
T 3sv0_A            7 NKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMDL   84 (483)
T ss_dssp             TTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEEC
T ss_pred             CcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEEC
Confidence            5788899999999999999985 5789999998875432  3469999999999977 5666666777788889999999


Q ss_pred             CCCCCHHHHHhc-CCcccchhHHHHHHHHHHhhccC
Q 011696          445 VPNNTLYFHLHG-KWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       445 ~~~GsL~~~L~~-~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      | +|+|.++++. +..+.++...++..-++.+|.||
T Consensus        85 ~-g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yL  119 (483)
T 3sv0_A           85 L-GPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFV  119 (483)
T ss_dssp             C-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             C-CCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            9 9999999874 33455555555555555555543

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.40  E-value=2.2e-13  Score=138.46  Aligned_cols=110  Identities=13%  Similarity=0.146  Sum_probs=82.3

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCC--------CCCccceEEEEE----
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIH--------HRHLVSLVGYCI----  433 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~--------HpNIv~LlG~~~----  433 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+++.. ....++|.+|+++|++|+        |+||++++++|.    
T Consensus        37 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~  115 (397)
T 1wak_A           37 GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGV  115 (397)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEET
T ss_pred             CeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCC
Confidence            5688889999999999999985 56889999999732 233467999999999986        788999999998    


Q ss_pred             eCCeEEEEEecCCCCCHHHHHhcC--CcccchhHHHHHHHHHHhhcc
Q 011696          434 SDDRRLLIYDYVPNNTLYFHLHGK--WQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       434 ~~~~~~LV~Ey~~~GsL~~~L~~~--~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      +....+|||||| +|+|.+++..+  ..+.+....++..-++.+|.|
T Consensus       116 ~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~  161 (397)
T 1wak_A          116 NGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDY  161 (397)
T ss_dssp             TEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHH
Confidence            455789999999 66676666543  234444444444444444444

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.39  E-value=5.5e-13  Score=138.41  Aligned_cols=110  Identities=14%  Similarity=0.249  Sum_probs=84.7

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhC------CCCCccceEEEEEeCCeEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRI------HHRHLVSLVGYCISDDRRL  439 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l------~HpNIv~LlG~~~~~~~~~  439 (479)
                      .+|...++||+|+||+||+|+. .+++.||||+++.. ....+++.+|+++|.+|      +|.||++++++|...+..+
T Consensus        97 ~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~  175 (429)
T 3kvw_A           97 YRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE-KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHIC  175 (429)
T ss_dssp             TTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEEE
T ss_pred             CcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc-cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeEE
Confidence            4688889999999999999986 45789999999742 23345788899888877      5679999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcCCc--ccchhHHHHHHHHHHhhcc
Q 011696          440 LIYDYVPNNTLYFHLHGKWQ--LGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~~~--~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||||||. |+|++++..+..  +.+....++..-++.++.|
T Consensus       176 lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~  215 (429)
T 3kvw_A          176 MTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDA  215 (429)
T ss_dssp             EEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999996 689998876543  4444444444444555444

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.39  E-value=9.6e-13  Score=128.39  Aligned_cols=110  Identities=16%  Similarity=0.245  Sum_probs=83.3

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEE-EeCCeEEEEEe
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYC-ISDDRRLLIYD  443 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~-~~~~~~~LV~E  443 (479)
                      .++|...++||+|+||+||+|+. .+|+.||||+++...  ..++|.+|+++|++++|.|++..+++| .+.+..+||||
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e   85 (296)
T 3uzp_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME   85 (296)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCS--SCCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred             ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCc--chhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEE
Confidence            36788889999999999999985 678899999987543  234799999999999998888777776 45667799999


Q ss_pred             cCCCCCHHHHHhc-CCcccchhHHHHHHHHHHhhcc
Q 011696          444 YVPNNTLYFHLHG-KWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       444 y~~~GsL~~~L~~-~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |+ +|+|.++++. +..+.+....++..-++.++.|
T Consensus        86 ~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~  120 (296)
T 3uzp_A           86 LL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEY  120 (296)
T ss_dssp             CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             ec-CCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHH
Confidence            99 9999999873 3334444444444444444433

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.38  E-value=1.2e-12  Score=127.50  Aligned_cols=110  Identities=16%  Similarity=0.245  Sum_probs=80.5

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEE-EeCCeEEEEEe
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYC-ISDDRRLLIYD  443 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~-~~~~~~~LV~E  443 (479)
                      .++|...++||+|+||+||+|+. .+|+.||||++....  ..++|.+|++++++++|.|++.++++| .+.+..+||||
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e   85 (296)
T 4hgt_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME   85 (296)
T ss_dssp             ---CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred             CCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccc--cchHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEEE
Confidence            46788999999999999999985 578899999876432  234699999999999998888887777 45667899999


Q ss_pred             cCCCCCHHHHHhc-CCcccchhHHHHHHHHHHhhcc
Q 011696          444 YVPNNTLYFHLHG-KWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       444 y~~~GsL~~~L~~-~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |+ +|+|.++++. +..+.+....++..-++.++.|
T Consensus        86 ~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~  120 (296)
T 4hgt_A           86 LL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEY  120 (296)
T ss_dssp             CC-CCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             cc-CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            99 9999999874 3334444444444444444433

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.37  E-value=6.5e-13  Score=138.13  Aligned_cols=88  Identities=18%  Similarity=0.201  Sum_probs=74.0

Q ss_pred             cCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEEEEecC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      .+|...++||+|+||+||.....+|+.||||++....   .+.+.+|+++|+++ +|+|||+|+++|.+.+..|||||||
T Consensus        24 ~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~---~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~~  100 (432)
T 3p23_A           24 ISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPEC---FSFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELC  100 (432)
T ss_dssp             EEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTT---EEECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             EEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHH---HHHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEECC
Confidence            4577889999999999655444589999999996432   23578999999999 8999999999999999999999999


Q ss_pred             CCCCHHHHHhcCC
Q 011696          446 PNNTLYFHLHGKW  458 (479)
Q Consensus       446 ~~GsL~~~L~~~~  458 (479)
                      . |+|.+++..+.
T Consensus       101 ~-g~L~~~l~~~~  112 (432)
T 3p23_A          101 A-ATLQEYVEQKD  112 (432)
T ss_dssp             S-EEHHHHHHSSS
T ss_pred             C-CCHHHHHHhcC
Confidence            6 69999987653

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.37  E-value=7.1e-13  Score=135.94  Aligned_cols=108  Identities=23%  Similarity=0.344  Sum_probs=77.6

Q ss_pred             cCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCe------EEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDR------RLL  440 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~------~~L  440 (479)
                      .+|...++||+|+||+||+|+..++..||||++....    +.+.+|+++|++|+|+|||+|+++|...+.      .+|
T Consensus        40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~----~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~l  115 (394)
T 4e7w_A           40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDK----RFKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNL  115 (394)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCT----TSCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEE
T ss_pred             ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCc----chHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEE
Confidence            4577889999999999999998777779999886432    234479999999999999999999975443      789


Q ss_pred             EEecCCCCCHHHHHh---cCCcccchhHHHHHHHHHHhhcc
Q 011696          441 IYDYVPNNTLYFHLH---GKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~---~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||||.++.+..+.+   .+..+.+.....+..-++.++.|
T Consensus       116 v~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~  156 (394)
T 4e7w_A          116 VLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAY  156 (394)
T ss_dssp             EEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             EeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999865543332   23334444444444444444443

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.33  E-value=8.4e-13  Score=133.29  Aligned_cols=110  Identities=14%  Similarity=0.197  Sum_probs=83.3

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCC-----------CCCccceEEEEEe
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIH-----------HRHLVSLVGYCIS  434 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~-----------HpNIv~LlG~~~~  434 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+++.. ....+.+.+|+++|++++           |+||++++++|..
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~   97 (373)
T 1q8y_A           19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNH   97 (373)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEE
T ss_pred             CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC-ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhc
Confidence            5688889999999999999985 57889999999632 233467899999999886           8899999999986


Q ss_pred             CC----eEEEEEecCCCCCHHHHHhcCCc--ccchhHHHHHHHHHHhhcc
Q 011696          435 DD----RRLLIYDYVPNNTLYFHLHGKWQ--LGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       435 ~~----~~~LV~Ey~~~GsL~~~L~~~~~--~~~~~~~~~~~l~~~~~~~  478 (479)
                      .+    ..+|||||+ +|+|.+++.....  +.+....++..-++.++.|
T Consensus        98 ~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~  146 (373)
T 1q8y_A           98 KGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDY  146 (373)
T ss_dssp             EETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHH
Confidence            54    678999999 9999999876332  3344444444434444433

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.33  E-value=1.9e-12  Score=131.94  Aligned_cols=111  Identities=22%  Similarity=0.312  Sum_probs=84.5

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCC-CCC-----ccceEEEEEeCCeE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIH-HRH-----LVSLVGYCISDDRR  438 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~-HpN-----Iv~LlG~~~~~~~~  438 (479)
                      .++|...++||+|+||+||+|+. .+|+.||||+++.. ....+++.+|+++|..++ |.|     |++++++|...+..
T Consensus        53 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~  131 (382)
T 2vx3_A           53 MDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK-KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHL  131 (382)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTEE
T ss_pred             eeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc-HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCce
Confidence            36788889999999999999985 46788999999732 233457888999999885 553     99999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCC--cccchhHHHHHHHHHHhhcc
Q 011696          439 LLIYDYVPNNTLYFHLHGKW--QLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~~--~~~~~~~~~~~~l~~~~~~~  478 (479)
                      +||||||. |+|.++|+...  .+.++...++..-++.++.|
T Consensus       132 ~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~  172 (382)
T 2vx3_A          132 CLVFEMLS-YNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLF  172 (382)
T ss_dssp             EEEEECCC-CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCC-CCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHH
Confidence            99999996 59999998653  34444444444444444443

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.32  E-value=1.5e-12  Score=132.02  Aligned_cols=90  Identities=11%  Similarity=0.023  Sum_probs=61.0

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC---cchHhHHHHHHHHHhC--CCCCccceE-------EEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---QGEREFKAEVEIISRI--HHRHLVSLV-------GYCI  433 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l--~HpNIv~Ll-------G~~~  433 (479)
                      .+|...++||+|+||+||+|+. .+|+.||||+++....   ...+.|.+|++++..|  +|+||++++       +++.
T Consensus        62 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~~  141 (371)
T 3q60_A           62 RKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVA  141 (371)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEEE
T ss_pred             eeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhee
Confidence            3477789999999999999985 4788999999986543   2234678885544444  699977755       5554


Q ss_pred             eC-----------------CeEEEEEecCCCCCHHHHHhcC
Q 011696          434 SD-----------------DRRLLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       434 ~~-----------------~~~~LV~Ey~~~GsL~~~L~~~  457 (479)
                      ..                 +..|||||||. |+|.++|+..
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~  181 (371)
T 3q60_A          142 VQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTL  181 (371)
T ss_dssp             ETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHH
T ss_pred             cCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHh
Confidence            33                 23799999999 9999999863

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.32  E-value=1.5e-12  Score=139.20  Aligned_cols=86  Identities=12%  Similarity=0.150  Sum_probs=64.3

Q ss_pred             cccccccccCccceEEEEeCCCCEEEEEEeecCCCc--------chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEE
Q 011696          370 ADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ--------GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       370 ~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~--------~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      ...++||+|+||+||+|.+ .++.+++|++......        ..++|.+|+++|++|+|+||+++..++...+..|||
T Consensus       339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lV  417 (540)
T 3en9_A          339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIM  417 (540)
T ss_dssp             ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEE
T ss_pred             CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEE
Confidence            3457899999999999965 6788999987532211        123589999999999999999888888888889999


Q ss_pred             EecCCCCCHHHHHhc
Q 011696          442 YDYVPNNTLYFHLHG  456 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~  456 (479)
                      ||||++|+|.++|+.
T Consensus       418 mE~~~ggsL~~~l~~  432 (540)
T 3en9_A          418 MSYINGKLAKDVIED  432 (540)
T ss_dssp             EECCCSEEHHHHSTT
T ss_pred             EECCCCCCHHHHHHH
Confidence            999999999887765

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.31  E-value=2.2e-12  Score=128.85  Aligned_cols=110  Identities=16%  Similarity=0.234  Sum_probs=83.3

Q ss_pred             cCccccccccccCccceEEEEeC-CC-CEEEEEEeecCCCcchHhHHHHHHHHHhCCCCC------ccceEEEEEeCCeE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DG-REVAIKQLKIGGGQGEREFKAEVEIISRIHHRH------LVSLVGYCISDDRR  438 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g-~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpN------Iv~LlG~~~~~~~~  438 (479)
                      ++|...++||+|+||+||+|+.. ++ +.||||+++.. ....+.+.+|+++|++|+|.|      |+.+++++...+..
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~   97 (355)
T 2eu9_A           19 ERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHM   97 (355)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTEE
T ss_pred             ccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc-ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCeE
Confidence            57888899999999999999863 34 68999999632 233457899999999998776      99999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCC--cccchhHHHHHHHHHHhhcc
Q 011696          439 LLIYDYVPNNTLYFHLHGKW--QLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~~--~~~~~~~~~~~~l~~~~~~~  478 (479)
                      +|||||| +|+|.+++..+.  .+.+....++..-++.++.|
T Consensus        98 ~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~  138 (355)
T 2eu9_A           98 CIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRF  138 (355)
T ss_dssp             EEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999 777877776543  34444444444444444443

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.23  E-value=7.4e-12  Score=122.71  Aligned_cols=88  Identities=19%  Similarity=0.269  Sum_probs=68.5

Q ss_pred             HHHHHhcCccccccccccCccceEEEEeCCCCEEEEEEeecCCC------------------cchHhHHHHHHHHHhCCC
Q 011696          361 ELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGG------------------QGEREFKAEVEIISRIHH  422 (479)
Q Consensus       361 el~~~~~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~------------------~~~~~f~~Ei~il~~l~H  422 (479)
                      ++......|...++||+|+||.||+|...+|+.||||.++....                  .....|.+|+++|++|+ 
T Consensus        84 ~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~-  162 (282)
T 1zar_A           84 RLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ-  162 (282)
T ss_dssp             HHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc-
Confidence            34444455667799999999999999987789999999964321                  12346999999999999 


Q ss_pred             CCccceEEEEEeCCeEEEEEecCCCCCHHH
Q 011696          423 RHLVSLVGYCISDDRRLLIYDYVPNNTLYF  452 (479)
Q Consensus       423 pNIv~LlG~~~~~~~~~LV~Ey~~~GsL~~  452 (479)
                       | +++++++. .+..+||||||.+|+|.+
T Consensus       163 -~-~~v~~~~~-~~~~~lvmE~~~g~~L~~  189 (282)
T 1zar_A          163 -G-LAVPKVYA-WEGNAVLMELIDAKELYR  189 (282)
T ss_dssp             -T-SSSCCEEE-EETTEEEEECCCCEEGGG
T ss_pred             -C-CCcCeEEe-ccceEEEEEecCCCcHHH
Confidence             6 77878654 355699999999999976

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.08  E-value=9e-11  Score=126.16  Aligned_cols=85  Identities=11%  Similarity=0.024  Sum_probs=61.7

Q ss_pred             ccccCccceEEEE-eCCCCEEEEEEeecCCC----------cchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEEEE
Q 011696          375 LGEGGFGSVYKGY-LPDGREVAIKQLKIGGG----------QGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       375 IG~G~fG~Vykg~-~~~g~~VAVK~l~~~~~----------~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++.|++|.++++. +.-|+.|+||.+.....          .+.++|.+|+++|+++ +|.||++|++++++++..||||
T Consensus       242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVM  321 (569)
T 4azs_A          242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVM  321 (569)
T ss_dssp             -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEE
T ss_pred             cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEE
Confidence            4556666555432 23478899999964321          1234699999999999 7999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCc
Q 011696          443 DYVPNNTLYFHLHGKWQ  459 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~  459 (479)
                      |||+||+|.++|..+..
T Consensus       322 Eyv~G~~L~d~i~~~~~  338 (569)
T 4azs_A          322 EKLPGRLLSDMLAAGEE  338 (569)
T ss_dssp             ECCCSEEHHHHHHTTCC
T ss_pred             ecCCCCcHHHHHHhCCC
Confidence            99999999998876544

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=98.88  E-value=1.3e-09  Score=105.10  Aligned_cols=82  Identities=17%  Similarity=0.167  Sum_probs=59.3

Q ss_pred             ccccccccccCccceEEEEe-CCCCE--EEEEEeecCCCc------------------------chHhHHHHHHHHHhCC
Q 011696          369 FADQNLLGEGGFGSVYKGYL-PDGRE--VAIKQLKIGGGQ------------------------GEREFKAEVEIISRIH  421 (479)
Q Consensus       369 f~~~~~IG~G~fG~Vykg~~-~~g~~--VAVK~l~~~~~~------------------------~~~~f~~Ei~il~~l~  421 (479)
                      |...+.||+|+||.||+|.. .+|+.  ||||.++.....                        ....+.+|+++|.+|+
T Consensus        49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~  128 (258)
T 1zth_A           49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK  128 (258)
T ss_dssp             EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence            45668899999999999987 68888  999987543211                        0125889999999999


Q ss_pred             CCCc--cceEEEEEeCCeEEEEEecCC-CC----CHHHHH
Q 011696          422 HRHL--VSLVGYCISDDRRLLIYDYVP-NN----TLYFHL  454 (479)
Q Consensus       422 HpNI--v~LlG~~~~~~~~~LV~Ey~~-~G----sL~~~L  454 (479)
                      |.||  ..++++    +..+||||||. +|    +|.+++
T Consensus       129 ~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~  164 (258)
T 1zth_A          129 EAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELG  164 (258)
T ss_dssp             HTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHG
T ss_pred             hCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHh
Confidence            8865  344432    35689999994 24    666554

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=98.80  E-value=2.8e-09  Score=109.78  Aligned_cols=56  Identities=11%  Similarity=0.097  Sum_probs=45.9

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC---cchHhHHHHHHHHHhCCC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG---QGEREFKAEVEIISRIHH  422 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~---~~~~~f~~Ei~il~~l~H  422 (479)
                      .+|...++||+|+||+||+|+. .+|+.||||+++....   ...+.|.+|+.+++.|+|
T Consensus        78 ~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~  137 (413)
T 3dzo_A           78 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRG  137 (413)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTT
T ss_pred             eeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhcc
Confidence            4577788999999999999994 5789999999974332   235679999999999988

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=98.63  E-value=5.5e-09  Score=106.48  Aligned_cols=85  Identities=9%  Similarity=0.088  Sum_probs=55.4

Q ss_pred             CccccccccccCccceEEEEeCCCCEEEEEEeecCCC-----c---------chHhH--------HHHHHHHHhCCCCCc
Q 011696          368 GFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGG-----Q---------GEREF--------KAEVEIISRIHHRHL  425 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~-----~---------~~~~f--------~~Ei~il~~l~HpNI  425 (479)
                      -|...+.||+|+||.||+|...+|+.||||.++....     .         ....+        .+|...|.+|.|.+|
T Consensus        96 iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv  175 (397)
T 4gyi_A           96 VYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGF  175 (397)
T ss_dssp             CSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3677889999999999999988999999998753210     0         01122        245556666644443


Q ss_pred             cceEEEEEeCCeEEEEEecCCCCCHHHHH
Q 011696          426 VSLVGYCISDDRRLLIYDYVPNNTLYFHL  454 (479)
Q Consensus       426 v~LlG~~~~~~~~~LV~Ey~~~GsL~~~L  454 (479)
                      ....-+..  +..+|||||+.++.|..++
T Consensus       176 ~vp~p~~~--~~~~LVME~i~G~~L~~l~  202 (397)
T 4gyi_A          176 PVPEPIAQ--SRHTIVMSLVDALPMRQVS  202 (397)
T ss_dssp             SCCCEEEE--ETTEEEEECCSCEEGGGCC
T ss_pred             CCCeeeec--cCceEEEEecCCccHhhhc
Confidence            22212222  2337999999999886554

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=98.39  E-value=9.3e-07  Score=84.49  Aligned_cols=92  Identities=11%  Similarity=0.012  Sum_probs=74.2

Q ss_pred             HHHHHhcCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCC-CCCccceEEEEEeCCeEE
Q 011696          361 ELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIH-HRHLVSLVGYCISDDRRL  439 (479)
Q Consensus       361 el~~~~~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~-HpNIv~LlG~~~~~~~~~  439 (479)
                      .+....++|.....++.|+++.||+... +|+.++||+..........+|.+|+++|+.|+ |-+|.++++++.+.+..|
T Consensus         8 ~l~~~l~~~~~~~~~~g~s~~~v~~~~~-~~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~   86 (263)
T 3tm0_A            8 ELKKLIEKYRCVKDTEGMSPAKVYKLVG-ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSN   86 (263)
T ss_dssp             HHHHHHTTSEEEECCSCCSSSEEEEEEC-SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEE
T ss_pred             HHHHHhccceeEeeccCCCCCeEEEEEC-CCCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceE
Confidence            3444556787777888889999999986 47889999986532233457999999999994 677889999999988999


Q ss_pred             EEEecCCCCCHHHH
Q 011696          440 LIYDYVPNNTLYFH  453 (479)
Q Consensus       440 LV~Ey~~~GsL~~~  453 (479)
                      |||||++|.+|.+.
T Consensus        87 lv~e~i~G~~l~~~  100 (263)
T 3tm0_A           87 LLMSEADGVLCSEE  100 (263)
T ss_dssp             EEEECCSSEEHHHH
T ss_pred             EEEEecCCeehhhc
Confidence            99999999999765

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=98.01  E-value=3.9e-06  Score=79.42  Aligned_cols=81  Identities=15%  Similarity=0.140  Sum_probs=62.3

Q ss_pred             CccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCC--ccceEEEEEeCCeEEEEEecC
Q 011696          368 GFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRH--LVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpN--Iv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      ++....+.+.|.++.||+....+|+.++||.....   ...++.+|+++|+.|++.+  |.++++++...+..++||||+
T Consensus        21 ~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i   97 (264)
T 1nd4_A           21 GYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEV   97 (264)
T ss_dssp             TCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECC
T ss_pred             CCceEecccCCCCceEEEEecCCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEec
Confidence            34443444566679999998877888999987543   2357899999999996545  456999988888889999999


Q ss_pred             CCCCHH
Q 011696          446 PNNTLY  451 (479)
Q Consensus       446 ~~GsL~  451 (479)
                      +|++|.
T Consensus        98 ~G~~l~  103 (264)
T 1nd4_A           98 PGQDLL  103 (264)
T ss_dssp             SSEETT
T ss_pred             CCcccC
Confidence            998874

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=97.44  E-value=0.00022  Score=71.30  Aligned_cols=80  Identities=13%  Similarity=0.293  Sum_probs=58.1

Q ss_pred             ccccccccCccceEEEEeCCCCEEEEEEee--cCCC-cchHhHHHHHHHHHhCC--CCCccceEEEEEeC---CeEEEEE
Q 011696          371 DQNLLGEGGFGSVYKGYLPDGREVAIKQLK--IGGG-QGEREFKAEVEIISRIH--HRHLVSLVGYCISD---DRRLLIY  442 (479)
Q Consensus       371 ~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~--~~~~-~~~~~f~~Ei~il~~l~--HpNIv~LlG~~~~~---~~~~LV~  442 (479)
                      ..+.|+.|.++.||+.... ++.++||+..  .... ....++.+|+++|+.|+  +-++.+++++|.+.   +..|+||
T Consensus        42 ~~~~l~~G~sn~~y~v~~~-~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vm  120 (359)
T 3dxp_A           42 SVEQFKGGQSNPTFKLVTP-GQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIM  120 (359)
T ss_dssp             EEEECCC-CCSCEEEEECS-SCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEE
T ss_pred             eEEEcCCcccceEEEEEEC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEE
Confidence            4567899999999999874 4678888765  3321 23457999999999997  45688999999776   3478999


Q ss_pred             ecCCCCCHH
Q 011696          443 DYVPNNTLY  451 (479)
Q Consensus       443 Ey~~~GsL~  451 (479)
                      ||+++..|.
T Consensus       121 e~v~G~~l~  129 (359)
T 3dxp_A          121 EFVSGRVLW  129 (359)
T ss_dssp             ECCCCBCCC
T ss_pred             EecCCeecC
Confidence            999998874

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=96.95  E-value=0.0007  Score=46.02  Aligned_cols=29  Identities=10%  Similarity=0.252  Sum_probs=15.5

Q ss_pred             eehhhHHHHHHHHHHHHHHhhhhhhhccc
Q 011696          270 TVVIAVAVGIIAFSLIGLVVWCLRRRKKE  298 (479)
Q Consensus       270 ~i~i~v~~~iv~~~ll~l~~~~~~rrkk~  298 (479)
                      .|+.++++++++++++++++|+++|||++
T Consensus        12 ~IA~gVVgGv~~~~ii~~~~~~~~RRr~~   40 (44)
T 2ks1_B           12 SIATGMVGALLLLLVVALGIGLFMRRRHI   40 (44)
T ss_dssp             SSTHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             eEEeehhHHHHHHHHHHHHHHHHhhhhHh
Confidence            34555555565555555555555544443

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=96.88  E-value=0.0015  Score=63.08  Aligned_cols=79  Identities=19%  Similarity=0.220  Sum_probs=58.2

Q ss_pred             CccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCC---CccceEEEEEeCCeEEEEEec
Q 011696          368 GFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHR---HLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~Hp---NIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      .+...+.+|.|..+.||+.++.||+.|.||+-..........|.+|++.|+.|..-   -+.+++++  +  ..++||||
T Consensus        16 ~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~--~--~~~lv~e~   91 (288)
T 3f7w_A           16 EVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGW--D--DRTLAMEW   91 (288)
T ss_dssp             CEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEE--E--TTEEEEEC
T ss_pred             CeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEec--c--CceEEEEe
Confidence            45556778999999999999999999999986544333345688999999988432   34455554  2  34789999


Q ss_pred             CCCCCH
Q 011696          445 VPNNTL  450 (479)
Q Consensus       445 ~~~GsL  450 (479)
                      +.++.+
T Consensus        92 l~~~~~   97 (288)
T 3f7w_A           92 VDERPP   97 (288)
T ss_dssp             CCCCCC
T ss_pred             ecccCC
Confidence            987764

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=96.83  E-value=0.00081  Score=45.58  Aligned_cols=29  Identities=24%  Similarity=0.375  Sum_probs=15.8

Q ss_pred             eehhhHHHHHHHHHHHHHHhhhhhhhccc
Q 011696          270 TVVIAVAVGIIAFSLIGLVVWCLRRRKKE  298 (479)
Q Consensus       270 ~i~i~v~~~iv~~~ll~l~~~~~~rrkk~  298 (479)
                      .++.+++.++++++++++++|+++|||++
T Consensus        11 aIA~gVVgGv~~v~ii~~~~~~~~RRRr~   39 (44)
T 2l2t_A           11 LIAAGVIGGLFILVIVGLTFAVYVRRKSI   39 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             eEEEeehHHHHHHHHHHHHHHHHhhhhhh
Confidence            34555555566655555555555554443

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=96.80  E-value=0.0027  Score=64.27  Aligned_cols=76  Identities=14%  Similarity=0.151  Sum_probs=51.2

Q ss_pred             cccccccCccceEEEEeC-CCCEEEEEEeecCCC-------cchHhHHHHHHHHHhCCC--CC-ccceEEEEEeCCeEEE
Q 011696          372 QNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGG-------QGEREFKAEVEIISRIHH--RH-LVSLVGYCISDDRRLL  440 (479)
Q Consensus       372 ~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~-------~~~~~f~~Ei~il~~l~H--pN-Iv~LlG~~~~~~~~~L  440 (479)
                      .+.||.|.++.||++... +++.|+||+......       ...+.+.+|+++|..+++  ++ +-+++++  +.+..+|
T Consensus        35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l  112 (397)
T 2olc_A           35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT  112 (397)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred             EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence            457899999999999753 468899998642211       123457889999988743  33 3466654  4556789


Q ss_pred             EEecCCCCC
Q 011696          441 IYDYVPNNT  449 (479)
Q Consensus       441 V~Ey~~~Gs  449 (479)
                      ||||+.+..
T Consensus       113 vmE~l~g~~  121 (397)
T 2olc_A          113 VMEDLSHLK  121 (397)
T ss_dssp             EECCCTTSE
T ss_pred             EEEeCCCcc
Confidence            999998743

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=96.71  E-value=0.0035  Score=61.76  Aligned_cols=76  Identities=13%  Similarity=0.142  Sum_probs=61.4

Q ss_pred             ccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCC---CCCccceEEEEEeCCeEEEEEecCCC
Q 011696          371 DQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIH---HRHLVSLVGYCISDDRRLLIYDYVPN  447 (479)
Q Consensus       371 ~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~---HpNIv~LlG~~~~~~~~~LV~Ey~~~  447 (479)
                      ..+.|+.|.+..+|+... +++.++||+....   ....|.+|+++|+.|.   .-.|.++++++...+..+|||||+++
T Consensus        40 ~~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G  115 (312)
T 3jr1_A           40 HKEKLYSGEMNEIWLIND-EVQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNK  115 (312)
T ss_dssp             EEEEECCSSSSEEEEEES-SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCC
T ss_pred             eeEEeCCccceeeeEEEE-CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccC
Confidence            345689999999999886 5678889876532   3457899999998883   36688999999888889999999998


Q ss_pred             CCH
Q 011696          448 NTL  450 (479)
Q Consensus       448 GsL  450 (479)
                      +.+
T Consensus       116 ~~~  118 (312)
T 3jr1_A          116 SKN  118 (312)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            865

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=96.62  E-value=0.0097  Score=56.37  Aligned_cols=79  Identities=18%  Similarity=0.225  Sum_probs=59.3

Q ss_pred             ccccccCcc-ceEEEEeC-CCCEEEEEEeecCCCcchHhHHHHHHHHHhCC-CCCccceEEEEEeCCeEEEEEecCCCCC
Q 011696          373 NLLGEGGFG-SVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIH-HRHLVSLVGYCISDDRRLLIYDYVPNNT  449 (479)
Q Consensus       373 ~~IG~G~fG-~Vykg~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~-HpNIv~LlG~~~~~~~~~LV~Ey~~~Gs  449 (479)
                      +.+..|..| .||+-... +++.+.||+-..   ....+|.+|+++|+.|. +--|-+++++|.+.+..+|||||+++.+
T Consensus        30 ~~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~---~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~  106 (272)
T 4gkh_A           30 ARDNVGQSGATIYRLYGKPNAPELFLKHGKG---SVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKT  106 (272)
T ss_dssp             EEEECSSSSCEEEEEECCTTCCCEEEEEEET---HHHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEE
T ss_pred             EEccCCCcCCeEEEEEecCCCeEEEEEECCC---CCHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCcc
Confidence            345566666 58987653 466788887653   23457899999999884 4446689999999999999999999988


Q ss_pred             HHHHH
Q 011696          450 LYFHL  454 (479)
Q Consensus       450 L~~~L  454 (479)
                      |.+.+
T Consensus       107 ~~~~~  111 (272)
T 4gkh_A          107 AFQVL  111 (272)
T ss_dssp             HHHHH
T ss_pred             ccccc
Confidence            86543

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=96.08  E-value=0.0022  Score=63.66  Aligned_cols=81  Identities=7%  Similarity=-0.033  Sum_probs=57.7

Q ss_pred             cccc-cccCccceEEEEeC-------CCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCC---CCccceEEEEEeC--
Q 011696          372 QNLL-GEGGFGSVYKGYLP-------DGREVAIKQLKIGG---GQGEREFKAEVEIISRIHH---RHLVSLVGYCISD--  435 (479)
Q Consensus       372 ~~~I-G~G~fG~Vykg~~~-------~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~H---pNIv~LlG~~~~~--  435 (479)
                      .+.| +.|..+.+|+....       +++.+++|+.....   .....++.+|+++|+.|+.   -.+-+++++|.+.  
T Consensus        25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~  104 (357)
T 3ats_A           25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDV  104 (357)
T ss_dssp             EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTT
T ss_pred             EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCc
Confidence            3567 88989999988764       26678888764322   1123568899999998843   3577889988655  


Q ss_pred             -CeEEEEEecCCCCCHHH
Q 011696          436 -DRRLLIYDYVPNNTLYF  452 (479)
Q Consensus       436 -~~~~LV~Ey~~~GsL~~  452 (479)
                       +..|+||||+++..|.+
T Consensus       105 ~g~~~~v~e~l~G~~l~~  122 (357)
T 3ats_A          105 LGTPFFLMDYVEGVVPPD  122 (357)
T ss_dssp             TSSCEEEEECCCCBCCCB
T ss_pred             cCCceEEEEecCCCChhh
Confidence             24689999999987754

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=95.93  E-value=0.00076  Score=70.23  Aligned_cols=60  Identities=5%  Similarity=0.016  Sum_probs=18.2

Q ss_pred             cccccccCccceEEEEeCC-CCEEEE------EEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEe
Q 011696          372 QNLLGEGGFGSVYKGYLPD-GREVAI------KQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCIS  434 (479)
Q Consensus       372 ~~~IG~G~fG~Vykg~~~~-g~~VAV------K~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~  434 (479)
                      .+.||   ||+||+|.+.. ...|||      |+++....  +...+|.+|..++.+++|+||++++++...
T Consensus       147 ~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~~  215 (463)
T 3cxl_A          147 YEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVH  215 (463)
T ss_dssp             TTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEEE
T ss_pred             cccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEEe
Confidence            45666   99999999854 357888      77764332  233479999999999999999999998764

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=95.65  E-value=0.029  Score=54.66  Aligned_cols=75  Identities=20%  Similarity=0.160  Sum_probs=55.4

Q ss_pred             cccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCC---CccceEEEEE-eCCeEEEEEecCCC
Q 011696          372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHR---HLVSLVGYCI-SDDRRLLIYDYVPN  447 (479)
Q Consensus       372 ~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~Hp---NIv~LlG~~~-~~~~~~LV~Ey~~~  447 (479)
                      .+.|+.|....||+.    |+.++||.-+  .......+.+|+++|..|++.   .|-++++++. ..+..++||||++|
T Consensus        24 v~~l~~G~~n~v~~v----g~~~VlR~~~--~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G   97 (306)
T 3tdw_A           24 VESLGEGFRNYAILV----NGDWVFRFPK--SQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQG   97 (306)
T ss_dssp             EEEEEECSSEEEEEE----TTTEEEEEES--SHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCS
T ss_pred             eeecCCCcceeEEEE----CCEEEEEecC--CchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCC
Confidence            356788888899987    5668888743  122345799999999999763   3567788875 34557899999999


Q ss_pred             CCHHH
Q 011696          448 NTLYF  452 (479)
Q Consensus       448 GsL~~  452 (479)
                      ..|.+
T Consensus        98 ~~l~~  102 (306)
T 3tdw_A           98 QILGE  102 (306)
T ss_dssp             EECHH
T ss_pred             eECch
Confidence            88765

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=95.57  E-value=0.01  Score=40.05  Aligned_cols=17  Identities=29%  Similarity=0.530  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHhhhhhh
Q 011696          278 GIIAFSLIGLVVWCLRR  294 (479)
Q Consensus       278 ~iv~~~ll~l~~~~~~r  294 (479)
                      ++++++++++++++++|
T Consensus        20 Gvll~vi~~l~~~~~~R   36 (44)
T 2jwa_A           20 GILLVVVLGVVFGILIK   36 (44)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhee
Confidence            34444444444333333

>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A

Probab=95.34  E-value=0.0097  Score=39.11  Aligned_cols=15  Identities=20%  Similarity=0.131  Sum_probs=6.4

Q ss_pred             HHHHHHHHhhhhhhh
Q 011696          281 AFSLIGLVVWCLRRR  295 (479)
Q Consensus       281 ~~~ll~l~~~~~~rr  295 (479)
                      ++++++.++|++|||
T Consensus        23 gv~li~~l~~~~~rr   37 (38)
T 2k1k_A           23 GAALLLGILVFRSRR   37 (38)
T ss_dssp             HHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHeec
Confidence            344444444444444

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=94.87  E-value=0.018  Score=55.77  Aligned_cols=75  Identities=21%  Similarity=0.239  Sum_probs=52.0

Q ss_pred             cccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCC-CCC--ccceEEEEEeCC---eEEEEEecC
Q 011696          372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIH-HRH--LVSLVGYCISDD---RRLLIYDYV  445 (479)
Q Consensus       372 ~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~-HpN--Iv~LlG~~~~~~---~~~LV~Ey~  445 (479)
                      .+.|+.|.+..||+..    +.++||.....  .....+.+|+++|+.|. |-.  +-++++++...+   ..|+||||+
T Consensus        25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i   98 (304)
T 3sg8_A           25 IEISGEGNDCIAYEIN----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKI   98 (304)
T ss_dssp             CCEEEECSSEEEEEST----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECC
T ss_pred             eEecCCCCcceEEEEC----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEccc
Confidence            3568999999999853    45888876422  23457999999999984 333  345555554333   347899999


Q ss_pred             CCCCHHH
Q 011696          446 PNNTLYF  452 (479)
Q Consensus       446 ~~GsL~~  452 (479)
                      +|..|.+
T Consensus        99 ~G~~l~~  105 (304)
T 3sg8_A           99 KGVPLTP  105 (304)
T ss_dssp             CCEECCH
T ss_pred             CCeECCc
Confidence            9988754

>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}

Probab=94.24  E-value=0.025  Score=37.81  Aligned_cols=25  Identities=32%  Similarity=0.529  Sum_probs=10.3

Q ss_pred             ehhhHHHHHHHHHHHHHHhhhhhhh
Q 011696          271 VVIAVAVGIIAFSLIGLVVWCLRRR  295 (479)
Q Consensus       271 i~i~v~~~iv~~~ll~l~~~~~~rr  295 (479)
                      +++++++++++++++++++|+++||
T Consensus        15 I~~~vv~Gv~ll~~iv~~~~~~~rR   39 (41)
T 2k9y_A           15 VIGGVAVGVVLLLVLAGVGFFIHRR   39 (41)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred             EEeehhHHHHHHHHHHHHheeEeee
Confidence            3444444444444233333444443

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=94.02  E-value=0.13  Score=49.95  Aligned_cols=75  Identities=12%  Similarity=0.088  Sum_probs=50.5

Q ss_pred             cccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCC--CccceEEE-----EEeCCeEEEEEecCC
Q 011696          374 LLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHR--HLVSLVGY-----CISDDRRLLIYDYVP  446 (479)
Q Consensus       374 ~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~Hp--NIv~LlG~-----~~~~~~~~LV~Ey~~  446 (479)
                      .|+ |....||+....+|+.++||..+... ...+++.+|++++..|+..  .+.++++.     ...++..++||||++
T Consensus        33 ~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~-~~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~~~i~  110 (328)
T 1zyl_A           33 PLN-SYENRVYQFQDEDRRRFVVKFYRPER-WTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVG  110 (328)
T ss_dssp             EEC-CSSSEEEEECCTTCCCEEEEEECTTT-SCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCC
T ss_pred             eec-CcccceEEEEcCCCCEEEEEEcCCCC-CCHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEEEecC
Confidence            466 77889999877778789999886322 2345677788888877432  24555543     223455678999999


Q ss_pred             CCCH
Q 011696          447 NNTL  450 (479)
Q Consensus       447 ~GsL  450 (479)
                      |..+
T Consensus       111 G~~~  114 (328)
T 1zyl_A          111 GRQF  114 (328)
T ss_dssp             CEEC
T ss_pred             CCCC
Confidence            7543

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=93.73  E-value=0.064  Score=36.33  Aligned_cols=31  Identities=16%  Similarity=-0.021  Sum_probs=18.3

Q ss_pred             ccceehhhHHHHHHHHHHHHHHhhhhhhhccc
Q 011696          267 TAGTVVIAVAVGIIAFSLIGLVVWCLRRRKKE  298 (479)
Q Consensus       267 ~~~~i~i~v~~~iv~~~ll~l~~~~~~rrkk~  298 (479)
                      .++.++.+++ +++++++++++++.+|+++++
T Consensus        13 IA~gVVgGv~-~~~ii~~~~~~~~RRr~~~~k   43 (44)
T 2ks1_B           13 IATGMVGALL-LLLVVALGIGLFMRRRHIVRK   43 (44)
T ss_dssp             STHHHHHHHH-HHHHHHHHHHHHHHTTTCCSC
T ss_pred             EEeehhHHHH-HHHHHHHHHHHHhhhhHhhcc
Confidence            4444444444 444555666777887777665

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=93.52  E-value=0.047  Score=36.94  Aligned_cols=29  Identities=21%  Similarity=-0.006  Sum_probs=17.5

Q ss_pred             ehhhHHHHHHHHHHHHHHhhhhhhhcccc
Q 011696          271 VVIAVAVGIIAFSLIGLVVWCLRRRKKEV  299 (479)
Q Consensus       271 i~i~v~~~iv~~~ll~l~~~~~~rrkk~~  299 (479)
                      .+++.++++++++++.+++|.+|++++++
T Consensus        15 gVVgGv~~v~ii~~~~~~~~RRRr~~~kr   43 (44)
T 2l2t_A           15 GVIGGLFILVIVGLTFAVYVRRKSIKKKR   43 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCSSCCC
T ss_pred             eehHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence            34444444555556667778877776654

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=93.49  E-value=0.098  Score=50.83  Aligned_cols=73  Identities=12%  Similarity=0.261  Sum_probs=42.4

Q ss_pred             ccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCC--CCccceEE------EEEeCCeEEEEEec
Q 011696          373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHH--RHLVSLVG------YCISDDRRLLIYDY  444 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~H--pNIv~LlG------~~~~~~~~~LV~Ey  444 (479)
                      +.|+.|.++.||+....+| .+++|+...    ..+++..|++++..|+.  -+|.+++.      +....+..++||||
T Consensus        38 ~~l~gG~~n~~~~v~~~~~-~~vlk~~~~----~~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~~  112 (346)
T 2q83_A           38 DVIQGNQMALVWKVHTDSG-AVCLKRIHR----PEKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYDW  112 (346)
T ss_dssp             EECC----CEEEEEEETTE-EEEEEEECS----CHHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEEC
T ss_pred             eeccccccCcEEEEEeCCC-CEEEEecCC----CHHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEEe
Confidence            3466678899999987555 588998864    12334445555554421  13444543      22346677899999


Q ss_pred             CCCCCH
Q 011696          445 VPNNTL  450 (479)
Q Consensus       445 ~~~GsL  450 (479)
                      ++|..+
T Consensus       113 i~G~~~  118 (346)
T 2q83_A          113 IEGRPF  118 (346)
T ss_dssp             CCCBCC
T ss_pred             ecCccC
Confidence            998654

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=92.98  E-value=0.23  Score=50.43  Aligned_cols=73  Identities=18%  Similarity=0.217  Sum_probs=47.5

Q ss_pred             cccccccCccceEEEEeCCCCEEEEEEeec-----CCC-c---chHhHHHHHHHHH-hCCCCCccceEEEEEeCCeEEEE
Q 011696          372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKI-----GGG-Q---GEREFKAEVEIIS-RIHHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       372 ~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~-----~~~-~---~~~~f~~Ei~il~-~l~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      .+.||.|..+.||+... +++.++||+...     ... .   +...|..|+..+. ...+-.+.+++++.  .+..++|
T Consensus        39 i~~l~~G~~n~vyrv~~-~~~~~vvK~~~p~~~~~~~~~~~~~~~~~~E~e~l~~~~~~~~~~vP~v~~~~--~~~~~lv  115 (420)
T 2pyw_A           39 IKEVGDGNLNFVFIVVG-SSGSLVIKQALPYIRCIGESWPMTKERAYFEATTLRKHGNLSPDHVPEVYHFD--RTMALIG  115 (420)
T ss_dssp             EEECCCSSSCEEEEEEC-SSCEEEEEECCSBCTTTCTTSBCCTTHHHHHHHHHHHHHHHSGGGSCCEEEEE--TTTTEEE
T ss_pred             EEEccCCCcEEEEEEEc-CCceEEEEECchhhcccCcccccchhHHHHHHHHHHHHHhhCCCCCCeEEEEC--CCccEEE
Confidence            45689999999999975 577899995421     111 1   2223545544333 23345677887776  5677999


Q ss_pred             EecC-CC
Q 011696          442 YDYV-PN  447 (479)
Q Consensus       442 ~Ey~-~~  447 (479)
                      |||+ .+
T Consensus       116 ~e~l~~g  122 (420)
T 2pyw_A          116 MRYLEPP  122 (420)
T ss_dssp             ECCCCTT
T ss_pred             EeecCCc
Confidence            9999 76

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=92.66  E-value=0.0053  Score=64.08  Aligned_cols=33  Identities=18%  Similarity=0.107  Sum_probs=26.9

Q ss_pred             cchHhHHHHHHHHHhCCCCCccceEEEEEeCCe
Q 011696          405 QGEREFKAEVEIISRIHHRHLVSLVGYCISDDR  437 (479)
Q Consensus       405 ~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~  437 (479)
                      ...++|.+|+++|++++|+|||+|+|||+....
T Consensus       321 ~g~~eF~~Eve~L~~i~HrNLV~L~gyC~s~~~  353 (487)
T 3oja_A          321 QGSETERLECERENQARQREIDALKEQYRTVID  353 (487)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             ccHHHHHHHHHHHhcccccchhhHHHHhcChHH
Confidence            346689999999999999999999999987654

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=92.48  E-value=0.067  Score=54.83  Aligned_cols=72  Identities=21%  Similarity=0.278  Sum_probs=50.4

Q ss_pred             ccccccCccceEEEEeCC--------CCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCc-cceEEEEEeCCeEEEEEe
Q 011696          373 NLLGEGGFGSVYKGYLPD--------GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHL-VSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~~--------g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNI-v~LlG~~~~~~~~~LV~E  443 (479)
                      +.|+.|....||+....+        ++.|.||+....  ...+++++|+.+|..|...+| .+++|++.  +  .+|||
T Consensus        79 ~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~--~~~~~li~E~~~l~~L~~~g~~P~l~~~~~--~--g~v~e  152 (429)
T 1nw1_A           79 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP--ETESHLVAESVIFTLLSERHLGPKLYGIFS--G--GRLEE  152 (429)
T ss_dssp             EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC--CCHHHHHHHHHHHHHHHHTTSSSCEEEEET--T--EEEEC
T ss_pred             EEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC--CcHHHHHHHHHHHHHHHhCCCCCcEEEEeC--C--CEEEE
Confidence            457888889999998753        477888877321  112567789999998854444 57777653  3  38999


Q ss_pred             cCCCCCH
Q 011696          444 YVPNNTL  450 (479)
Q Consensus       444 y~~~GsL  450 (479)
                      |+++..|
T Consensus       153 ~l~G~~l  159 (429)
T 1nw1_A          153 YIPSRPL  159 (429)
T ss_dssp             CCCEEEC
T ss_pred             EeCCccc
Confidence            9986444

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=92.46  E-value=0.2  Score=48.48  Aligned_cols=91  Identities=9%  Similarity=0.019  Sum_probs=53.5

Q ss_pred             ccHHHHHHHhcCccc-----cccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCC--ccceE
Q 011696          357 FTYEELVKATDGFAD-----QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRH--LVSLV  429 (479)
Q Consensus       357 ~~~eel~~~~~~f~~-----~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpN--Iv~Ll  429 (479)
                      ++.+++....+.|..     .+.|+.|....+|+....+| .+++|.....  ...+++..|+++|..|+..+  +.+++
T Consensus         7 ~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~--~~~~~l~~e~~~l~~L~~~g~~vP~~~   83 (322)
T 2ppq_A            7 ITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKR--VEKNDLPFFLGLMQHLAAKGLSCPLPL   83 (322)
T ss_dssp             CCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCCBC
T ss_pred             CCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc-cEEEEEeCCC--CCHHHHHHHHHHHHHHHHCCCCCCccc
Confidence            455666665555543     23466788889999987555 5788887642  12345667777777764323  33444


Q ss_pred             EE------EEeCCeEEEEEecCCCCCH
Q 011696          430 GY------CISDDRRLLIYDYVPNNTL  450 (479)
Q Consensus       430 G~------~~~~~~~~LV~Ey~~~GsL  450 (479)
                      ..      ....+..++||||++|..+
T Consensus        84 ~~~~g~~~~~~~g~~~~l~~~l~G~~~  110 (322)
T 2ppq_A           84 PRKDGELLGELSGRPAALISFLEGMWL  110 (322)
T ss_dssp             CBTTCCSCEEETTEEEEEEECCCCBCC
T ss_pred             CCCCCCEEEEECCEEEEEEEeCCCcCC
Confidence            21      1234567899999998654

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=91.91  E-value=0.13  Score=51.71  Aligned_cols=73  Identities=22%  Similarity=0.284  Sum_probs=45.5

Q ss_pred             ccccccCccceEEEEeC--------CCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCc-cceEEEEEeCCeEEEEEe
Q 011696          373 NLLGEGGFGSVYKGYLP--------DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHL-VSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~--------~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNI-v~LlG~~~~~~~~~LV~E  443 (479)
                      +.|..|....+|+....        +++.|.||+-.. ......++.+|.++|+.|..-+| -+++++|.  +  .+|||
T Consensus        56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~-~~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~--~--g~v~e  130 (379)
T 3feg_A           56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGA-ILQGVDSLVLESVMFAILAERSLGPQLYGVFP--E--GRLEQ  130 (379)
T ss_dssp             EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC----CCHHHHHHHHHHHHHHHHTTSSCCEEEEET--T--EEEEE
T ss_pred             EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCC-ccchHHHHHHHHHHHHHHHhcCCCCeEEEEcC--C--ccEEE
Confidence            34667888889998864        246788887522 12234567899999988843333 57777663  3  29999


Q ss_pred             cCCCCCH
Q 011696          444 YVPNNTL  450 (479)
Q Consensus       444 y~~~GsL  450 (479)
                      |++|..|
T Consensus       131 ~i~G~~l  137 (379)
T 3feg_A          131 YIPSRPL  137 (379)
T ss_dssp             CCSEEEC
T ss_pred             EecCccC
Confidence            9998665

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=91.21  E-value=0.89  Score=44.15  Aligned_cols=79  Identities=8%  Similarity=0.044  Sum_probs=44.1

Q ss_pred             ccccccCccc-eEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCC--CCccceEEEEEeCCeEEEEEecCCCCC
Q 011696          373 NLLGEGGFGS-VYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHH--RHLVSLVGYCISDDRRLLIYDYVPNNT  449 (479)
Q Consensus       373 ~~IG~G~fG~-Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~H--pNIv~LlG~~~~~~~~~LV~Ey~~~Gs  449 (479)
                      +.|+.|.... +|+....+|+.+++|......   .+++..|++++..|+.  -++-++++++.+.  .++|||++.+..
T Consensus        24 ~~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~---~~~~~~e~~~l~~L~~~g~~vP~v~~~d~~~--g~ll~e~l~~~~   98 (333)
T 3csv_A           24 TPLAGDASSRRYQRLRSPTGAKAVLMDWSPEE---GGDTQPFVDLAQYLRNLDISAPEIYAEEHAR--GLLLIEDLGDAL   98 (333)
T ss_dssp             CC--------CCEEEECTTCCEEEEEECCTTT---TCCSHHHHHHHHHHHHTTCBCCCEEEEETTT--TEEEECCCCSCB
T ss_pred             eECCCCCCCceEEEEEcCCCCeEEEEECCCCC---CccccHHHHHHHHHHhCCCCCCceeeecCCC--CEEEEeeCCCcc
Confidence            4465555444 677765447777777543221   1345566666666632  3456777775333  378999998888


Q ss_pred             HHHHHhc
Q 011696          450 LYFHLHG  456 (479)
Q Consensus       450 L~~~L~~  456 (479)
                      |.+++.+
T Consensus        99 l~~~l~~  105 (333)
T 3csv_A           99 FTEVINN  105 (333)
T ss_dssp             HHHHHHH
T ss_pred             hHHHhcC
Confidence            8776654

>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1

Probab=90.59  E-value=0.099  Score=33.41  Aligned_cols=19  Identities=32%  Similarity=0.592  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHhhhhhhhc
Q 011696          278 GIIAFSLIGLVVWCLRRRK  296 (479)
Q Consensus       278 ~iv~~~ll~l~~~~~~rrk  296 (479)
                      ++++++++++++.+++|||
T Consensus        16 glll~vii~l~~~~~iRRr   34 (35)
T 1iij_A           16 GVLLFLILVVVVGILIKRR   34 (35)
T ss_dssp             HHHHHHHHTTTTTHHHHHC
T ss_pred             HHHHHHHHHHHhheEEeec
Confidence            3444444444444444443

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=90.29  E-value=0.33  Score=50.09  Aligned_cols=73  Identities=10%  Similarity=0.043  Sum_probs=48.1

Q ss_pred             ccccccCccceEEEEeCC-CCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCc-cceEEEEEeCCeEEEEEecCCCCCH
Q 011696          373 NLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHL-VSLVGYCISDDRRLLIYDYVPNNTL  450 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~~-g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNI-v~LlG~~~~~~~~~LV~Ey~~~GsL  450 (479)
                      +.|+.|....+|+....+ ++.|++|+..... ...-+..+|+++|..|...+| .+++|++  .+  .+||||+++..|
T Consensus       114 ~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~-~~~idR~~E~~vl~~L~~~gl~P~ll~~~--~~--G~v~e~I~G~~l  188 (458)
T 2qg7_A          114 QIINGGITNILIKVKDMSKQAKYLIRLYGPKT-DEIINREREKKISCILYNKNIAKKIYVFF--TN--GRIEEFMDGYAL  188 (458)
T ss_dssp             EEECC--CEEEEEEEETTTTEEEEEEEECC-C-CSCSCHHHHHHHHHHHTTSSSBCCEEEEE--TT--EEEEECCCSEEC
T ss_pred             EEcCCCeEeEEEEEEECCCCceEEEEECCCCh-hhhcCHHHHHHHHHHHHhcCCCCCEEEEe--CC--eEEEEeeCCccC
Confidence            457788889999998755 4678888764221 111233689999999866556 4788876  23  359999997554

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=89.95  E-value=0.12  Score=34.88  Aligned_cols=28  Identities=11%  Similarity=0.198  Sum_probs=18.4

Q ss_pred             eehhhHHHHHHHHHHHHHHhhhhhhhccc
Q 011696          270 TVVIAVAVGIIAFSLIGLVVWCLRRRKKE  298 (479)
Q Consensus       270 ~i~i~v~~~iv~~~ll~l~~~~~~rrkk~  298 (479)
                      ..+++ +++++++++++++++.+|+.+++
T Consensus        16 ~~vVG-vll~vi~~l~~~~~~RRR~~~~k   43 (44)
T 2jwa_A           16 SAVVG-ILLVVVLGVVFGILIKRRQQKIR   43 (44)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHHHCSCCC
T ss_pred             HHHHH-HHHHHHHHHHHHhheehhhhhcc
Confidence            34455 45666677777778888877654

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=88.60  E-value=0.26  Score=48.83  Aligned_cols=73  Identities=11%  Similarity=0.093  Sum_probs=45.0

Q ss_pred             ccccccCccceEEEEeCC---------CCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCcc-ceEEEEEeCCeEEEEE
Q 011696          373 NLLGEGGFGSVYKGYLPD---------GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLV-SLVGYCISDDRRLLIY  442 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~~---------g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv-~LlG~~~~~~~~~LV~  442 (479)
                      +.|+.|....+|+....+         ++.+++|..... .....+..+|+++|..|...+|+ ++++.+  .  .++||
T Consensus        39 ~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~-~~~~~~~~~E~~~l~~L~~~g~~P~~~~~~--~--~~~v~  113 (369)
T 3c5i_A           39 KQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKH-VDELYNTISEFEVYKTMSKYKIAPQLLNTF--N--GGRIE  113 (369)
T ss_dssp             EEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTT-GGGTSCHHHHHHHHHHHHHTTSSCCEEEEE--T--TEEEE
T ss_pred             EEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCC-ccceecHHHHHHHHHHHHhcCCCCceEEec--C--CcEEE
Confidence            457788888999988744         267888876432 11122456788888888544444 777654  2  36899


Q ss_pred             ecCCCCCH
Q 011696          443 DYVPNNTL  450 (479)
Q Consensus       443 Ey~~~GsL  450 (479)
                      ||+++..|
T Consensus       114 e~i~G~~l  121 (369)
T 3c5i_A          114 EWLYGDPL  121 (369)
T ss_dssp             ECCCSEEC
T ss_pred             EEecCCcC
Confidence            99997544

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=84.98  E-value=0.58  Score=44.89  Aligned_cols=71  Identities=8%  Similarity=0.057  Sum_probs=45.8

Q ss_pred             cccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCcc-ceEEEEEeCCeEEEEEecC-CCCC
Q 011696          372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLV-SLVGYCISDDRRLLIYDYV-PNNT  449 (479)
Q Consensus       372 ~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv-~LlG~~~~~~~~~LV~Ey~-~~Gs  449 (479)
                      .+.|+.|....+|+.     +.++||+-.... ....+..+|+++|+.+..-+|. ++++++  .+..++|+||+ .+..
T Consensus        23 i~~l~gG~tN~~~~~-----~~~vlR~~~~~~-~~~~~r~~E~~~l~~l~~~g~~P~~~~~~--~~~~~~v~e~i~~g~~   94 (301)
T 3dxq_A           23 PLERLGGLTNLVFRA-----GDLCLRIPGKGT-EEYINRANEAVAAREAAKAGVSPEVLHVD--PATGVMVTRYIAGAQT   94 (301)
T ss_dssp             CEEEESCSSEEEEEE-----TTEEEEEECC-----CCCHHHHHHHHHHHHHTTSSCCEEEEC--TTTCCEEEECCTTCEE
T ss_pred             eeEcCCcccccccee-----eeEEEECCCCCc-cceeCHHHHHHHHHHHHHcCCCCceEEEE--CCCCEEEEeecCCCcc
Confidence            466888999999998     458888765321 1122346788888777544444 666653  44457899999 5544


Q ss_pred             H
Q 011696          450 L  450 (479)
Q Consensus       450 L  450 (479)
                      |
T Consensus        95 l   95 (301)
T 3dxq_A           95 M   95 (301)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=84.30  E-value=1.1  Score=45.70  Aligned_cols=73  Identities=7%  Similarity=0.083  Sum_probs=48.2

Q ss_pred             ccccccCccceEEEEeCC--------CCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCc-cceEEEEEeCCeEEEEEe
Q 011696          373 NLLGEGGFGSVYKGYLPD--------GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHL-VSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~~--------g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNI-v~LlG~~~~~~~~~LV~E  443 (479)
                      +.|..|....+|+....+        ++.|.||+-... ....-+..+|.++|+.|..-+| -+++|.+  .  .++|||
T Consensus        76 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~-t~~~idR~~E~~~l~~L~~~gi~P~l~~~~--~--~~~I~e  150 (424)
T 3mes_A           76 KQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKH-VGKFYDSKVELDVFRYLSNINIAPNIIADF--P--EGRIEE  150 (424)
T ss_dssp             EEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCC-C-CCCCHHHHHHHHHHHHHTTSSCCEEEEE--T--TEEEEE
T ss_pred             EEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCC-cchhcCHHHHHHHHHHHHhcCCCCCEEEEc--C--CCEEEE
Confidence            456778888999988753        577888875332 2222245678888888743334 4666643  2  278999


Q ss_pred             cCCCCCH
Q 011696          444 YVPNNTL  450 (479)
Q Consensus       444 y~~~GsL  450 (479)
                      |++|..|
T Consensus       151 fI~G~~l  157 (424)
T 3mes_A          151 FIDGEPL  157 (424)
T ss_dssp             CCCSEEC
T ss_pred             EeCCccC
Confidence            9998765

>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}

Probab=82.36  E-value=1.1  Score=31.45  Aligned_cols=21  Identities=19%  Similarity=0.646  Sum_probs=10.3

Q ss_pred             eehhhHHHHHHHHHHHHHHhh
Q 011696          270 TVVIAVAVGIIAFSLIGLVVW  290 (479)
Q Consensus       270 ~i~i~v~~~iv~~~ll~l~~~  290 (479)
                      ++++++++++++++++.+++|
T Consensus        11 iIi~svl~GLLLL~Lii~~Lw   31 (54)
T 2l8s_A           11 VILLSAFAGLLLLMLLILALW   31 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555544444

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=80.18  E-value=4.3  Score=39.63  Aligned_cols=68  Identities=12%  Similarity=0.111  Sum_probs=42.4

Q ss_pred             cccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCC---CCccceEEE------EEeCCeEEEEEecCC
Q 011696          376 GEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHH---RHLVSLVGY------CISDDRRLLIYDYVP  446 (479)
Q Consensus       376 G~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~H---pNIv~LlG~------~~~~~~~~LV~Ey~~  446 (479)
                      |.|....||+....+| .+++|+......      .+|+++|..|+.   ++|.+++..      +...+..++||||++
T Consensus        32 G~g~~N~vy~v~~~~g-~~vLK~~~~~~~------~~E~~~l~~L~~~g~~~vp~pi~~~~G~~~~~~~g~~~~l~~~i~  104 (339)
T 3i1a_A           32 GADTNAFAYQADSESK-SYFIKLKYGYHD------EINLSIIRLLHDSGIKEIIFPIHTLEAKLFQQLKHFKIIAYPFIH  104 (339)
T ss_dssp             TSCSSCEEEEEECSSC-EEEEEEEECSSC------CHHHHHHHHHHHTTCCSSCCCCCCTTSCSSEECSSEEEEEEECCC
T ss_pred             cCccccceEEEEeCCC-CEEEEEecCccc------hHHHHHHHHHHhcCCcccccceecCCCCEEEEECCEEEEEEeccC
Confidence            3444678999987667 899997764332      244444544421   224555532      234566789999999


Q ss_pred             CCCH
Q 011696          447 NNTL  450 (479)
Q Consensus       447 ~GsL  450 (479)
                      |..+
T Consensus       105 G~~~  108 (339)
T 3i1a_A          105 APNG  108 (339)
T ss_dssp             CCBT
T ss_pred             CCcC
Confidence            8765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	479
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	3e-27
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	1e-26
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	5e-26
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	1e-25
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	3e-25
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	6e-25
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	1e-23
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	2e-23
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	3e-23
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	5e-23
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	9e-23
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	3e-22
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	4e-22
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	1e-21
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	2e-21
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	2e-21
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	2e-21
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	3e-21
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	3e-21
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	5e-21
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	7e-21
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	9e-21
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	2e-20
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	2e-20
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	2e-20
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	3e-20
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	4e-20
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	7e-20
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	9e-20
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	2e-19
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	2e-19
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	2e-19
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	3e-19
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	3e-19
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	3e-19
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	4e-19
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	5e-19
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	5e-19
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	6e-19
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	8e-19
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	1e-18
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	2e-18
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	2e-17
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	2e-17
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	7e-17
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	1e-16
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	1e-16
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	1e-16
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	2e-16
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	3e-16
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	5e-16
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	6e-16
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	1e-15
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	1e-14
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	1e-14
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	7e-14
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	7e-14
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	1e-13
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	1e-13
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	4e-13
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	4e-12
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	4e-12
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	1e-10

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (269), Expect = 3e-27
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 1/88 (1%)

Query: 373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYC 432
             +G G FG V+ GY  +  +VAIK ++ G    E +F  E E++ ++ H  LV L G C
Sbjct: 11  QEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVC 69

Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGKWQL 460
           +      L+++++ +  L  +L  +  L
Sbjct: 70  LEQAPICLVFEFMEHGCLSDYLRTQRGL 97

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  107 bits (268), Expect = 1e-26
 Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 14/116 (12%)

Query: 357 FTYEELVKATDGFAD---------QNLLGEGGFGSVYKGYLP----DGREVAIKQLKIG- 402
           FT+E+  +A   FA          + ++G G FG V  G+L         VAIK LK G 
Sbjct: 7   FTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGY 66

Query: 403 GGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGKW 458
             +  R+F +E  I+ +  H +++ L G        ++I +++ N +L   L    
Sbjct: 67  TEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQND 122

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (260), Expect = 5e-26
 Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 1/87 (1%)

Query: 373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYC 432
             LG G FG V  G      +VAIK +K G    E EF  E +++  + H  LV L G C
Sbjct: 10  KELGTGQFGVVKYGKWRGQYDVAIKMIKEGS-MSEDEFIEEAKVMMNLSHEKLVQLYGVC 68

Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGKWQ 459
                  +I +Y+ N  L  +L     
Sbjct: 69  TKQRPIFIITEYMANGCLLNYLREMRH 95

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 1e-25
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 2/91 (2%)

Query: 373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYC 432
             LG G FG V+ GY     +VA+K LK  G      F AE  ++ ++ H+ LV L    
Sbjct: 19  ERLGAGQFGEVWMGYYNGHTKVAVKSLKQ-GSMSPDAFLAEANLMKQLQHQRLVRLYAVV 77

Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGKWQLGFD 463
              +   +I +Y+ N +L   L     +   
Sbjct: 78  T-QEPIYIITEYMENGSLVDFLKTPSGIKLT 107

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 3e-25
 Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 2/103 (1%)

Query: 365 ATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGERE-FKAEVEIISRIHH 422
             D F   + LG G  G V+K    P G  +A K + +      R     E++++   + 
Sbjct: 4   KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNS 63

Query: 423 RHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGKWQLGFDIR 465
            ++V   G   SD    +  +++   +L   L    ++   I 
Sbjct: 64  PYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQIL 106

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 6e-25
 Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 4/92 (4%)

Query: 373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYC 432
             +G+G FG V  G    G +VA+K +K       + F AE  +++++ H +LV L+G  
Sbjct: 13  QTIGKGEFGDVMLGDY-RGNKVAVKCIK--NDATAQAFLAEASVMTQLRHSNLVQLLGVI 69

Query: 433 ISDDRRL-LIYDYVPNNTLYFHLHGKWQLGFD 463
           + +   L ++ +Y+   +L  +L  + +    
Sbjct: 70  VEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLG 101

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.3 bits (244), Expect = 1e-23
 Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 6/105 (5%)

Query: 360 EELVKATDGFADQNL-LGEGGFGSVYKGYL---PDGREVAIKQLKIGGGQGERE-FKAEV 414
           ++L    D     ++ LG G FGSV +G         +VAIK LK G  + + E    E 
Sbjct: 1   KKLFLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREA 60

Query: 415 EIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGKWQ 459
           +I+ ++ + ++V L+G C   +  +L+ +      L+  L GK +
Sbjct: 61  QIMHQLDNPYIVRLIGVC-QAEALMLVMEMAGGGPLHKFLVGKRE 104

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.5 bits (242), Expect = 2e-23
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 371 DQNLLGEGGFGSVYKGYLPD---GREVAIKQLKIGGGQGE--REFKAEVEIISRIHHRHL 425
           +   LG G FG+V KGY       + VA+K LK          E  AE  ++ ++ + ++
Sbjct: 11  EDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYI 70

Query: 426 VSLVGYCISDDRRLLIYDYVPNNTLYFHLHGKWQL 460
           V ++G C   +  +L+ +      L  +L     +
Sbjct: 71  VRMIGIC-EAESWMLVMEMAELGPLNKYLQQNRHV 104

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.0 bits (243), Expect = 3e-23
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 8/93 (8%)

Query: 373 NLLGEGGFGSVYKGYL------PDGREVAIKQLKIGGGQGERE-FKAEVEIISRI-HHRH 424
             LG G FG V +              VA+K LK      ERE   +E++++S + +H +
Sbjct: 29  KTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMN 88

Query: 425 LVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGK 457
           +V+L+G C      L+I +Y     L   L  K
Sbjct: 89  IVNLLGACTIGGPTLVITEYCCYGDLLNFLRRK 121

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 97.0 bits (241), Expect = 5e-23
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 4/99 (4%)

Query: 366 TDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGE---REFKAEVEIISRIH 421
              F+D   +G G FG+VY    + +   VAIK++   G Q     ++   EV  + ++ 
Sbjct: 14  EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLR 73

Query: 422 HRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGKWQL 460
           H + +   G  + +    L+ +Y   +        K  L
Sbjct: 74  HPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPL 112

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 96.3 bits (239), Expect = 9e-23
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 2/97 (2%)

Query: 366 TDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGERE-FKAEVEIISRIHHR 423
            D +  +++LG G F  V         + VAIK +     +G+    + E+ ++ +I H 
Sbjct: 8   RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHP 67

Query: 424 HLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGKWQL 460
           ++V+L     S     LI   V    L+  +  K   
Sbjct: 68  NIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFY 104

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.9 bits (233), Expect = 3e-22
 Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 5/87 (5%)

Query: 373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVG 430
             +G G FG+VYKG      +VA+K L +     Q  + FK EV ++ +  H +++  +G
Sbjct: 14  QRIGSGSFGTVYKGKW--HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMG 71

Query: 431 YCISDDRRLLIYDYVPNNTLYFHLHGK 457
           Y  +  +  ++  +   ++LY HLH  
Sbjct: 72  YS-TAPQLAIVTQWCEGSSLYHHLHII 97

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.5 bits (234), Expect = 4e-22
 Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGY 431
           Q  +G+G FG V++G    G EVA+K       +     +AE+     + H +++  +  
Sbjct: 8   QESIGKGRFGEVWRGKW-RGEEVAVKIFSSREER-SWFREAEIYQTVMLRHENILGFIAA 65

Query: 432 CISDD----RRLLIYDYVPNNTLYFHLHGK 457
              D+    +  L+ DY  + +L+ +L+  
Sbjct: 66  DNKDNGTWTQLWLVSDYHEHGSLFDYLNRY 95

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 92.9 bits (230), Expect = 1e-21
 Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 2/106 (1%)

Query: 359 YEELVKATDGFADQNLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQGEREFKAEVEII 417
           Y++          ++ LG G +G VY+G        VA+K LK    + E EF  E  ++
Sbjct: 9   YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVE-EFLKEAAVM 67

Query: 418 SRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGKWQLGFD 463
             I H +LV L+G C  +    +I +++    L  +L    +    
Sbjct: 68  KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVS 113

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.0 bits (228), Expect = 2e-21
 Identities = 18/103 (17%), Positives = 42/103 (40%), Gaps = 4/103 (3%)

Query: 359 YEEL---VKATDGFADQNLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQGEREFKAEV 414
           YE +   +   D +     LG+G FG VYK    +     A K +     +   ++  E+
Sbjct: 1   YEHVTRDLNPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEI 60

Query: 415 EIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGK 457
           +I++   H ++V L+     ++   ++ ++     +   +   
Sbjct: 61  DILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLEL 103

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.8 bits (227), Expect = 2e-21
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 374 LLGEGGFGSVYKGYLPD----GREVAIKQLKIGGGQGERE-FKAEVEIISRIHHRHLVSL 428
            +GEG FG V++G           VAIK  K       RE F  E   + +  H H+V L
Sbjct: 14  CIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKL 73

Query: 429 VGYCISDDRRLLIYDYVPNNTLYFHLHGKWQ 459
           +G   +++   +I +      L   L  +  
Sbjct: 74  IGVI-TENPVWIIMELCTLGELRSFLQVRKY 103

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.6 bits (229), Expect = 2e-21
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 5/97 (5%)

Query: 372 QNLLGEGGFGSVYKGYLPDG---REVAIKQLK-IGGGQGEREFKAEVEIISRI-HHRHLV 426
           Q+++GEG FG V K  +       + AIK++K        R+F  E+E++ ++ HH +++
Sbjct: 15  QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNII 74

Query: 427 SLVGYCISDDRRLLIYDYVPNNTLYFHLHGKWQLGFD 463
           +L+G C       L  +Y P+  L   L     L  D
Sbjct: 75  NLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETD 111

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.6 bits (227), Expect = 3e-21
 Identities = 16/88 (18%), Positives = 40/88 (45%), Gaps = 1/88 (1%)

Query: 373 NLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGY 431
             +G+G  G+VY    +  G+EVAI+Q+ +     +     E+ ++    + ++V+ +  
Sbjct: 26  EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDS 85

Query: 432 CISDDRRLLIYDYVPNNTLYFHLHGKWQ 459
            +  D   ++ +Y+   +L   +     
Sbjct: 86  YLVGDELWVVMEYLAGGSLTDVVTETCM 113

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.8 bits (227), Expect = 3e-21
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 8/92 (8%)

Query: 374 LLGEGGFGSVYKGYLPD------GREVAIKQLKIGGGQGERE-FKAEVEIISRI-HHRHL 425
           +LG G FG V               +VA+K LK      ERE   +E+++++++  H ++
Sbjct: 44  VLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENI 103

Query: 426 VSLVGYCISDDRRLLIYDYVPNNTLYFHLHGK 457
           V+L+G C       LI++Y     L  +L  K
Sbjct: 104 VNLLGACTLSGPIYLIFEYCCYGDLLNYLRSK 135

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.6 bits (224), Expect = 5e-21
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 8/91 (8%)

Query: 375 LGEGGFGSVYKGYLP----DGREVAIKQLK---IGGGQGEREFKAEVEIISRIHHRHLVS 427
           LG+G FG V +G           VA+K LK   +   +   +F  EV  +  + HR+L+ 
Sbjct: 16  LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 75

Query: 428 LVGYCISDDRRLLIYDYVPNNTLYFHLHGKW 458
           L G  ++   + ++ +  P  +L   L    
Sbjct: 76  LYGVVLTPPMK-MVTELAPLGSLLDRLRKHQ 105

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.0 bits (225), Expect = 7e-21
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 372 QNLLGEGGFGSVYKGYLPD----GREVAIKQLKIGGGQGE-REFKAEVEIISRIHHRHLV 426
             ++G G FG VY G L D        A+K L      GE  +F  E  I+    H +++
Sbjct: 32  NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 91

Query: 427 SLVGYCI-SDDRRLLIYDYVPNNTLYFHLHGK 457
           SL+G C+ S+   L++  Y+ +  L   +  +
Sbjct: 92  SLLGICLRSEGSPLVVLPYMKHGDLRNFIRNE 123

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 91.3 bits (226), Expect = 9e-21
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYC 432
            LG G FG V++      GR    K +       +   K E+ I++++HH  L++L    
Sbjct: 36  ELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAF 95

Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGK 457
                 +LI +++    L+  +  +
Sbjct: 96  EDKYEMVLILEFLSGGELFDRIAAE 120

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.9 bits (220), Expect = 2e-20
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 373 NLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGERE-FKAEVEIISRIHHRHLVSLVG 430
             LGEG +G V           VA+K + +       E  K E+ I   ++H ++V   G
Sbjct: 11  QTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYG 70

Query: 431 YCISDDRRLLIYDYVPNNTLYFHLHGKWQL 460
           +    + + L  +Y     L+  +     +
Sbjct: 71  HRREGNIQYLFLEYCSGGELFDRIEPDIGM 100

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 90.2 bits (223), Expect = 2e-20
 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 7/99 (7%)

Query: 367 DGFADQNLLGEGGFGSVYKGYLPD-GREVAIKQLK---IGGGQGEREFKAEVEIISRIH- 421
           + F+   ++G GGFG VY     D G+  A+K L    I   QGE     E  ++S +  
Sbjct: 4   NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 63

Query: 422 --HRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGKW 458
                +V +     + D+   I D +    L++HL    
Sbjct: 64  GDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHG 102

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 89.1 bits (220), Expect = 2e-20
 Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 359 YEELVKATDGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGGQGER-EFK 411
              L    +       +GEG FG V++   P          VA+K LK       + +F+
Sbjct: 5   LLSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQ 64

Query: 412 AEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNN 469
            E  +++   + ++V L+G C       L+++Y+    L   L           +H++
Sbjct: 65  REAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSD 122

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.1 bits (218), Expect = 3e-20
 Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 4/93 (4%)

Query: 367 DGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLK---IGGGQGEREFKAEVEIISRIHH 422
           + F     LG+G FG+VY          +A+K L    +     E + + EVEI S + H
Sbjct: 6   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 65

Query: 423 RHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLH 455
            +++ L GY     R  LI +Y P  T+Y  L 
Sbjct: 66  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQ 98

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 88.4 bits (218), Expect = 4e-20
 Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 2/90 (2%)

Query: 373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIG--GGQGEREFKAEVEIISRIHHRHLVSLVG 430
             +GEG +G VYK     G   A+K++++             E+ I+  + H ++V L  
Sbjct: 8   EKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYD 67

Query: 431 YCISDDRRLLIYDYVPNNTLYFHLHGKWQL 460
              +  R +L+++++  +        +  L
Sbjct: 68  VIHTKKRLVLVFEHLDQDLKKLLDVCEGGL 97

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.2 bits (215), Expect = 7e-20
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 369 FADQNLLGEGGFGSVYKGYLPDG-----REVAIKQLKIGGGQGER-EFKAEVEIISRIHH 422
              Q ++G G FG VYKG L          VAIK LK G  + +R +F  E  I+ +  H
Sbjct: 9   VTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSH 68

Query: 423 RHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGKW 458
            +++ L G        ++I +Y+ N  L   L  K 
Sbjct: 69  HNIIRLEGVISKYKPMMIITEYMENGALDKFLREKD 104

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 87.1 bits (215), Expect = 9e-20
 Identities = 21/103 (20%), Positives = 45/103 (43%), Gaps = 8/103 (7%)

Query: 366 TDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGE---REFKAEVEIISRIH 421
           +D +    +LG GG   V+    L   R+VA+K L+    +       F+ E +  + ++
Sbjct: 6   SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALN 65

Query: 422 HRHLVSLVGYCISDDRRL----LIYDYVPNNTLYFHLHGKWQL 460
           H  +V++     ++        ++ +YV   TL   +H +  +
Sbjct: 66  HPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPM 108

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 87.4 bits (216), Expect = 2e-19
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 1/85 (1%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYC 432
            LG G FG V++      G   A K +       +   + E++ +S + H  LV+L    
Sbjct: 33  ELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAF 92

Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGK 457
             D+  ++IY+++    L+  +  +
Sbjct: 93  EDDNEMVMIYEFMSGGELFEKVADE 117

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.8 bits (212), Expect = 2e-19
 Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 7/98 (7%)

Query: 375 LGEGGFGSVYKGYLPD-GREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGY 431
           +G G F +VYKG   +   EVA  +L+         + FK E E++  + H ++V     
Sbjct: 17  IGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDS 76

Query: 432 CISDDRR----LLIYDYVPNNTLYFHLHGKWQLGFDIR 465
             S  +     +L+ + + + TL  +L     +   + 
Sbjct: 77  WESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVL 114

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.9 bits (212), Expect = 2e-19
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 372 QNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGY 431
           +  LG+G FG V+ G       VAIK LK  G      F  E +++ ++ H  LV L   
Sbjct: 22  EVKLGQGCFGEVWMGTWNGTTRVAIKTLKP-GTMSPEAFLQEAQVMKKLRHEKLVQLYAV 80

Query: 432 CISDDRRLLIYDYVPNNTLYFHLHGKWQ 459
             S++   ++ +Y+   +L   L G+  
Sbjct: 81  V-SEEPIYIVTEYMSKGSLLDFLKGETG 107

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.1 bits (212), Expect = 3e-19
 Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 7/100 (7%)

Query: 373 NLLGEGGFGSVYKGYL------PDGREVAIKQLKIGGGQGER-EFKAEVEIISRIHHRHL 425
             LG+G FG VY+G             VAIK +       ER EF  E  ++   +  H+
Sbjct: 26  RELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHV 85

Query: 426 VSLVGYCISDDRRLLIYDYVPNNTLYFHLHGKWQLGFDIR 465
           V L+G        L+I + +    L  +L        +  
Sbjct: 86  VRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNP 125

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.0 bits (212), Expect = 3e-19
 Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 10/118 (8%)

Query: 355 SMFTYEELVKATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGER----- 408
           ++F  E +    D +     LG G F  V K      G + A K +K    +  R     
Sbjct: 1   TVFRQENV---DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSR 57

Query: 409 -EFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGKWQLGFDIR 465
            + + EV I+  I H ++++L     +    +LI + V    L+  L  K  L  +  
Sbjct: 58  EDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEA 115

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.5 bits (211), Expect = 3e-19
 Identities = 26/101 (25%), Positives = 38/101 (37%), Gaps = 4/101 (3%)

Query: 364 KATDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLK---IGGGQGEREFKAEVEIISR 419
           K  + F    +LGEG F +V     L   RE AIK L+   I           E +++SR
Sbjct: 5   KRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSR 64

Query: 420 IHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGKWQL 460
           + H   V L      D++      Y  N  L  ++      
Sbjct: 65  LDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSF 105

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 85.3 bits (210), Expect = 4e-19
 Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 4/89 (4%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYC 432
            +G G FG +Y G  +  G EVAIK   +       +   E +I   +     +  + +C
Sbjct: 14  KIGSGSFGDIYLGTDIAAGEEVAIKLECVK--TKHPQLHIESKIYKMMQGGVGIPTIRWC 71

Query: 433 ISDDRRLLIY-DYVPNNTLYFHLHGKWQL 460
            ++    ++  + +  +          + 
Sbjct: 72  GAEGDYNVMVMELLGPSLEDLFNFCSRKF 100

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.7 bits (209), Expect = 5e-19
 Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 5/88 (5%)

Query: 373 NLLGEGGFGSVYKGY-LPDGREVAIKQLKIG--GGQGEREFKAEVEIISRIHHRHLVSLV 429
             +G G +G   K     DG+ +  K+L  G      ++   +EV ++  + H ++V   
Sbjct: 10  YTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYY 69

Query: 430 GYCI--SDDRRLLIYDYVPNNTLYFHLH 455
              I  ++    ++ +Y     L   + 
Sbjct: 70  DRIIDRTNTTLYIVMEYCEGGDLASVIT 97

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.5 bits (211), Expect = 5e-19
 Identities = 17/85 (20%), Positives = 40/85 (47%), Gaps = 2/85 (2%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYC 432
            LG G FG V++       +    K +K+  G  +   K E+ I++   HR+++ L    
Sbjct: 12  DLGRGEFGIVHRCVETSSKKTYMAKFVKV-KGTDQVLVKKEISILNIARHRNILHLHESF 70

Query: 433 ISDDRRLLIYDYVPNNTLYFHLHGK 457
            S +  ++I++++    ++  ++  
Sbjct: 71  ESMEELVMIFEFISGLDIFERINTS 95

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.2 bits (210), Expect = 6e-19
 Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 7/111 (6%)

Query: 361 ELVKATDGFADQNLLGEGGFGSVYKG-YLPDGRE----VAIKQLKIGG-GQGEREFKAEV 414
            ++K T+ F    +LG G FG+VYKG ++P+G +    VAIK+L+     +  +E   E 
Sbjct: 4   RILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 62

Query: 415 EIISRIHHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGKWQLGFDIR 465
            +++ + + H+  L+G C++   +L+         L +    K  +G    
Sbjct: 63  YVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYL 113

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.5 bits (208), Expect = 8e-19
 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 10/107 (9%)

Query: 373 NLLGEGGFGSVYKGYLP--------DGREVAIKQLKIGGGQGE-REFKAEVEIISRI-HH 422
             LGEG FG V                 +VA+K LK    + +  +  +E+E++  I  H
Sbjct: 19  KPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKH 78

Query: 423 RHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNN 469
           +++++L+G C  D    +I +Y     L  +L  +   G +   + +
Sbjct: 79  KNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPS 125

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 83.6 bits (206), Expect = 1e-18
 Identities = 21/105 (20%), Positives = 45/105 (42%), Gaps = 11/105 (10%)

Query: 367 DGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGG---------QGEREFKAEVEI 416
           + +  + +LG G    V +    P  +E A+K + + GG         +       EV+I
Sbjct: 3   ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDI 62

Query: 417 ISRIH-HRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGKWQL 460
           + ++  H +++ L     ++    L++D +    L+ +L  K  L
Sbjct: 63  LRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTL 107

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 80.6 bits (198), Expect = 2e-18
 Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 18/117 (15%)

Query: 373 NLLGEGGFGSVYKGYLPDGREVAIKQLKIGG----------GQGEREFKAEVEIISRIHH 422
            L+GEG   +V+  Y     E  +K  K+G             G+  F       +R   
Sbjct: 6   KLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEF 65

Query: 423 RHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLL--ILTVL 477
           R L  L G  +        Y +   N +   L    +L      + + +L  IL  +
Sbjct: 66  RALQKLQGLAVPKV-----YAWE-GNAVLMELIDAKELYRVRVENPDEVLDMILEEV 116

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.7 bits (198), Expect = 2e-17
 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 9/94 (9%)

Query: 373 NLLGEGGFGSVYKGY------LPDGREVAIKQLKIGGGQGE-REFKAEVEIISRI-HHRH 424
             LG G FG V +            R VA+K LK G    E R   +E++I+  I HH +
Sbjct: 19  KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLN 78

Query: 425 LVSLVGYCISDDRRLLI-YDYVPNNTLYFHLHGK 457
           +V+L+G C      L++  ++     L  +L  K
Sbjct: 79  VVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSK 112

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.4 bits (200), Expect = 2e-17
 Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 7/99 (7%)

Query: 366 TDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGERE-FKAEVEIISRIHHR 423
              + + + +GEG +G V   Y   +   VAIK++     Q   +    E++I+ R  H 
Sbjct: 7   GPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHE 66

Query: 424 HLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGKWQLGF 462
           +++ +     +     +   Y     L  HL G      
Sbjct: 67  NIIGINDIIRAPTIEQMKDVY-----LVTHLMGADLYKL 100

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.5 bits (195), Expect = 7e-17
 Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 13/117 (11%)

Query: 354 RSMFTYEELVKATDGFADQ----NLLGEGGFGSVYKGY-LPDGREVAIKQLK--IGGGQG 406
           RS F  +E+ K              +G G +G+V        G +VAIK+L         
Sbjct: 1   RSGFYRQEVTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELF 60

Query: 407 EREFKAEVEIISRIHHRHLVSLVGYCISDDRR------LLIYDYVPNNTLYFHLHGK 457
            +    E+ ++  + H +++ L+     D+         L+  ++  +      H K
Sbjct: 61  AKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHEK 117

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.2 bits (192), Expect = 1e-16
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 4/91 (4%)

Query: 373 NLLGEGGFGSVYKGY-LPDGREVAIKQLK---IGGGQGEREFKAEVEIISRIHHRHLVSL 428
             LG G FG V+      +GR  A+K LK   +   +       E  ++S + H  ++ +
Sbjct: 10  RTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRM 69

Query: 429 VGYCISDDRRLLIYDYVPNNTLYFHLHGKWQ 459
            G      +  +I DY+    L+  L    +
Sbjct: 70  WGTFQDAQQIFMIMDYIEGGELFSLLRKSQR 100

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.2 bits (192), Expect = 1e-16
 Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 5/99 (5%)

Query: 367 DGFADQNLLGEGGFGSVYKG-YLPDGREVAIKQLKIGGGQGERE---FKAEVEIISR-IH 421
           + F    +LG+G FG V+   +    +  AIK LK      + +      E  ++S    
Sbjct: 2   EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWE 61

Query: 422 HRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGKWQL 460
           H  L  +     + +    + +Y+    L +H+    + 
Sbjct: 62  HPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHKF 100

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 77.9 bits (191), Expect = 1e-16
 Identities = 14/89 (15%), Positives = 33/89 (37%), Gaps = 4/89 (4%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGY 431
            +GEG FG +++G  L + ++VAIK           + + E      +     + ++  +
Sbjct: 12  RIGEGSFGVIFEGTNLLNNQQVAIKFEPR--RSDAPQLRDEYRTYKLLAGCTGIPNVYYF 69

Query: 432 CISDDRRLLIYDYVPNNTLYFHLHGKWQL 460
                  +L+ D +  +          + 
Sbjct: 70  GQEGLHNVLVIDLLGPSLEDLLDLCGRKF 98

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.6 bits (190), Expect = 2e-16
 Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 6/94 (6%)

Query: 373 NLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQG-----EREFKAEVEIISRIHHRHLV 426
           + LGEG F +VYK       + VAIK++K+G          R    E++++  + H +++
Sbjct: 4   DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNII 63

Query: 427 SLVGYCISDDRRLLIYDYVPNNTLYFHLHGKWQL 460
            L+          L++D++  +           L
Sbjct: 64  GLLDAFGHKSNISLVFDFMETDLEVIIKDNSLVL 97

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.5 bits (190), Expect = 3e-16
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 11/96 (11%)

Query: 369 FADQNLLGEGGFGSVYKGYLPD-GREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVS 427
           + D  ++G G FG VY+  L D G  VAIK++     Q +R    E++I+ ++ H ++V 
Sbjct: 22  YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVL----QDKRFKNRELQIMRKLDHCNIVR 77

Query: 428 LVGYCISDDRR------LLIYDYVPNNTLYFHLHGK 457
           L  +  S   +       L+ DYVP        H  
Sbjct: 78  LRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYS 113

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.4 bits (187), Expect = 5e-16
 Identities = 19/102 (18%), Positives = 47/102 (46%), Gaps = 4/102 (3%)

Query: 367 DGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIG--GGQGEREFKAEVEIISRIHHR 423
           + F     +GEG +G VYK      G  VA+K++++             E+ ++  ++H 
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61

Query: 424 HLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGKWQLGFDIR 465
           ++V L+    ++++  L+++++ +  L   +      G  + 
Sbjct: 62  NIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLP 102

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.7 bits (188), Expect = 6e-16
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 11/98 (11%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGY 431
           +LG G  G V + +      + A+K L+        + + EVE+  R     H+V +V  
Sbjct: 19  VLGLGINGKVLQIFNKRTQEKFALKMLQ-----DCPKARREVELHWRASQCPHIVRIVDV 73

Query: 432 C----ISDDRRLLIYDYVPNNTLYFHLHGKWQLGFDIR 465
                      L++ + +    L+  +  +    F  R
Sbjct: 74  YENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTER 111

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.7 bits (183), Expect = 1e-15
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 9/93 (9%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGERE------FKAEVEIISRIHHRH-- 424
           LLG GGFGSVY G  + D   VAIK ++        E         EV ++ ++      
Sbjct: 11  LLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSG 70

Query: 425 LVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGK 457
           ++ L+ +    D  +LI +        F    +
Sbjct: 71  VIRLLDWFERPDSFVLILERPEPVQDLFDFITE 103

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (178), Expect = 1e-14
 Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 4/98 (4%)

Query: 367 DGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLK---IGGGQGEREFKAEVEIISRIHH 422
           + F    LLG+G FG V        GR  A+K L+   I           E  ++    H
Sbjct: 5   NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRH 64

Query: 423 RHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGKWQL 460
             L +L     + DR   + +Y     L+FHL  +   
Sbjct: 65  PFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVF 102

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (176), Expect = 1e-14
 Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 9/103 (8%)

Query: 367 DGFADQNLLGEGGFGSVYKGYL----PDGREVAIKQLK----IGGGQGEREFKAEVEIIS 418
           + F    +LG G +G V+          G+  A+K LK    +   +     + E +++ 
Sbjct: 24  ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLE 83

Query: 419 RI-HHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGKWQL 460
            I     LV+L     ++ +  LI DY+    L+ HL  + + 
Sbjct: 84  HIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQRERF 126

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 70.3 bits (171), Expect = 7e-14
 Identities = 21/111 (18%), Positives = 45/111 (40%), Gaps = 10/111 (9%)

Query: 352 HSRSMFTYEELVKAT---DGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGE 407
             R  + YE  V      D +     LG G +  V++   + +  +V +K LK      +
Sbjct: 17  RPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKP---VKK 73

Query: 408 REFKAEVEIISRI-HHRHLVSLVGYCISDDRRL--LIYDYVPNNTLYFHLH 455
           ++ K E++I+  +    ++++L         R   L++++V N        
Sbjct: 74  KKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQ 124

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (170), Expect = 7e-14
 Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 22/128 (17%)

Query: 351 GHSRSMFTYEELVKATDGFADQNLLGEGGFGSVYKGY--LPDGREVAIKQLKIGGGQG-- 406
           G  R+   YE +            +GEG +G V+K       GR VA+K++++  G+   
Sbjct: 1   GLCRADQQYECV----------AEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGM 50

Query: 407 EREFKAEVEIISRI---HHRHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGKWQLGFD 463
                 EV ++  +    H ++V L   C                 L F    +    + 
Sbjct: 51  PLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLT-----LVFEHVDQDLTTYL 105

Query: 464 IRNHNNGL 471
            +    G+
Sbjct: 106 DKVPEPGV 113

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (169), Expect = 1e-13
 Identities = 18/102 (17%), Positives = 44/102 (43%), Gaps = 11/102 (10%)

Query: 373 NLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQG--EREFKAEVEIISRIHHRHLVSLV 429
             +G+G FG V+K      G++VA+K++ +   +         E++I+  + H ++V+L+
Sbjct: 16  AKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLI 75

Query: 430 GYCISDDRR--------LLIYDYVPNNTLYFHLHGKWQLGFD 463
             C +             L++D+  ++      +   +    
Sbjct: 76  EICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLS 117

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (167), Expect = 1e-13
 Identities = 18/98 (18%), Positives = 42/98 (42%), Gaps = 3/98 (3%)

Query: 373 NLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLV 429
             +GEG +G+V+K         VA+K++++             E+ ++  + H+++V L 
Sbjct: 8   EKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLH 67

Query: 430 GYCISDDRRLLIYDYVPNNTLYFHLHGKWQLGFDIRNH 467
               SD +  L++++   +   +       L  +I   
Sbjct: 68  DVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKS 105

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.0 bits (165), Expect = 4e-13
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 9/91 (9%)

Query: 374 LLGEGGFGSVYKGY-LPDGREVAIKQLK--IGGGQGEREFKAEVEIISRIHHRHLVSLVG 430
            +G G  G V   Y     R VAIK+L          +    E+ ++  ++H++++SL+ 
Sbjct: 24  PIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLN 83

Query: 431 YCISDDRR------LLIYDYVPNNTLYFHLH 455
                          L+ + +  N       
Sbjct: 84  VFTPQKTLEEFQDVYLVMELMDANLCQVIQM 114

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.9 bits (157), Expect = 4e-12
 Identities = 19/128 (14%), Positives = 49/128 (38%), Gaps = 12/128 (9%)

Query: 357 FTYEELVKA----TDGFADQNLLGEGGFGSVYKGY-LPDGREVAIKQLK--IGGGQGERE 409
           F  +EL K      + + + + +G G +GSV   +    G  VA+K+L          + 
Sbjct: 4   FYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKR 63

Query: 410 FKAEVEIISRIHHRHLVSLVGYC-----ISDDRRLLIYDYVPNNTLYFHLHGKWQLGFDI 464
              E+ ++  + H +++ L+        + +   + +  ++    L   +  +      +
Sbjct: 64  TYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHV 123

Query: 465 RNHNNGLL 472
           +     +L
Sbjct: 124 QFLIYQIL 131

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.8 bits (157), Expect = 4e-12
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 4/90 (4%)

Query: 375 LGEGGFGSVYKGY-LPDGREVAIKQL---KIGGGQGEREFKAEVEIISRIHHRHLVSLVG 430
           LG G FG V        G   A+K L   K+   +       E  I+  ++   LV L  
Sbjct: 49  LGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEF 108

Query: 431 YCISDDRRLLIYDYVPNNTLYFHLHGKWQL 460
               +    ++ +YV    ++ HL    + 
Sbjct: 109 SFKDNSNLYMVMEYVAGGEMFSHLRRIGRF 138

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.4 bits (145), Expect = 1e-10
 Identities = 15/100 (15%), Positives = 39/100 (39%), Gaps = 8/100 (8%)

Query: 363 VKATDGFAD-----QNLLGEGGFGSVYKGY-LPDGREVAIKQLKIGGGQGEREFKAEVEI 416
               + + D        LG G F +V+    + +   VA+K ++      E   + E+++
Sbjct: 4   AFKGEPYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEA-AEDEIKL 62

Query: 417 ISRIHHRHLVSLVGYCISDDRRLLIY-DYVPNNTLYFHLH 455
           + R++            +   +LL + ++   N ++  + 
Sbjct: 63  LQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMV 102

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	479
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.82
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.81
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.81
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.8
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.8
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.8
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.79
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.79
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.79
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.78
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.78
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	99.78
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.78
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.77
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.77
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.77
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.77
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.77
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.76
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.76
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.76
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.76
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.76
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.75
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.74
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.74
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.74
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.74
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.73
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.73
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.73
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.72
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.72
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.71
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.71
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.71
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.7
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.7
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.69
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.69
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.69
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.69
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.68
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.67
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.65
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.64
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.64
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.63
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.61
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.6
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.59
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.58
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.58
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.57
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.54
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.52
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.51
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.49
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.12
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.11
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	97.32
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	95.22
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	94.48
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	87.83
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	87.44

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=8.1e-21  Score=182.57  Aligned_cols=110  Identities=23%  Similarity=0.353  Sum_probs=88.8

Q ss_pred             cCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~  446 (479)
                      ++|...+.||+|+||+||+|++.+++.||||+++.. ....++|++|+++|++|+|+|||+|+|+|.+++..+||||||.
T Consensus         5 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~-~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~~~   83 (263)
T d1sm2a_           5 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREG-AMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFME   83 (263)
T ss_dssp             SCEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSS-SSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCT
T ss_pred             HHcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCC-cCcHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEecC
Confidence            467778899999999999999988889999999753 3445789999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcCC-cccchhHHHHHHHHHHhhc
Q 011696          447 NNTLYFHLHGKW-QLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       447 ~GsL~~~L~~~~-~~~~~~~~~~~~l~~~~~~  477 (479)
                      +|+|.++++.+. .+.++.+.++..-+..++.
T Consensus        84 ~g~L~~~l~~~~~~~~~~~~~~i~~qia~gl~  115 (263)
T d1sm2a_          84 HGCLSDYLRTQRGLFAAETLLGMCLDVCEGMA  115 (263)
T ss_dssp             TCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHhhccccCCCHHHHHHHHHHHHHHHH
Confidence            999999987643 3334444433333333333

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.7e-20  Score=178.47  Aligned_cols=110  Identities=25%  Similarity=0.331  Sum_probs=89.7

Q ss_pred             cCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~  446 (479)
                      ++|...++||+|+||+||+|++.+++.||||+++... ...++|++|+++|++++|+|||+|+|+|.+++..+||||||.
T Consensus         4 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~-~~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey~~   82 (258)
T d1k2pa_           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGS-MSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMA   82 (258)
T ss_dssp             CCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSS-SCHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEECCT
T ss_pred             HHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcCc-CCHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEccC
Confidence            5688889999999999999999888899999998543 345789999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcC-CcccchhHHHHHHHHHHhhc
Q 011696          447 NNTLYFHLHGK-WQLGFDIRNHNNGLLILTVL  477 (479)
Q Consensus       447 ~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~~  477 (479)
                      +|+|.++++.+ ..+.++.+.++..-+..++.
T Consensus        83 ~g~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~  114 (258)
T d1k2pa_          83 NGCLLNYLREMRHRFQTQQLLEMCKDVCEAME  114 (258)
T ss_dssp             TEEHHHHHHSGGGCCCHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHhhhccccCCcHHHHHHHHHHHHHHHH
Confidence            99999987654 33444444444433444443

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=7.5e-21  Score=185.22  Aligned_cols=112  Identities=22%  Similarity=0.291  Sum_probs=89.9

Q ss_pred             hcCccccccccccCccceEEEEeC-CCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLP-DGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      .++|...+.||+|+||+||+|++. +|+.||||+++... .+.++|++|+++|++|+|+|||+|+|+|.+++..+|||||
T Consensus        16 ~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~-~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~E~   94 (287)
T d1opja_          16 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF   94 (287)
T ss_dssp             GGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTC-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred             HHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCcc-chHHHHHHHHHHHHhCCCCCEecCCccEeeCCeeEEEeec
Confidence            456788899999999999999874 58889999997543 3466899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCcccchhH--HHHHHHHHHhhcc
Q 011696          445 VPNNTLYFHLHGKWQLGFDIR--NHNNGLLILTVLP  478 (479)
Q Consensus       445 ~~~GsL~~~L~~~~~~~~~~~--~~~~~l~~~~~~~  478 (479)
                      |++|+|.++|+.+....+++.  .++..-+..++.|
T Consensus        95 ~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~y  130 (287)
T d1opja_          95 MTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEY  130 (287)
T ss_dssp             CTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             ccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHH
Confidence            999999999986544444443  3333334444443

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=6.3e-20  Score=178.99  Aligned_cols=113  Identities=23%  Similarity=0.251  Sum_probs=94.2

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC------cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG------QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL  439 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~------~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~  439 (479)
                      +.|...+.||+|+||+||+|+. .+|+.||||+++....      ...++|.+|+++|++|+|+|||+|+|+|.+++..|
T Consensus        10 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~   89 (293)
T d1jksa_          10 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI   89 (293)
T ss_dssp             GTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence            5688889999999999999986 5789999999964321      23467999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          440 LIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      ||||||.+|+|.++|..+..+.++....+..-++.++.||
T Consensus        90 iv~E~~~gg~L~~~i~~~~~l~~~~~~~~~~qi~~al~yL  129 (293)
T d1jksa_          90 LILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYL  129 (293)
T ss_dssp             EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCccccchhccccccchhHHHHHHHHHHHHHHhh
Confidence            9999999999999998766666666666666566666553

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=1.8e-20  Score=183.52  Aligned_cols=122  Identities=25%  Similarity=0.342  Sum_probs=90.1

Q ss_pred             ccHHHHHHHhcC---------ccccccccccCccceEEEEeC-CCC---EEEEEEeecCCCc-chHhHHHHHHHHHhCCC
Q 011696          357 FTYEELVKATDG---------FADQNLLGEGGFGSVYKGYLP-DGR---EVAIKQLKIGGGQ-GEREFKAEVEIISRIHH  422 (479)
Q Consensus       357 ~~~eel~~~~~~---------f~~~~~IG~G~fG~Vykg~~~-~g~---~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~H  422 (479)
                      ++|+|+.+++.+         |...++||+|+||+||+|++. +|+   .||||+++..... ..++|++|+++|++|+|
T Consensus         7 ~t~~d~~~a~~~f~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~H   86 (299)
T d1jpaa_           7 FTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDH   86 (299)
T ss_dssp             GGSSSHHHHHHHHSCBCCGGGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCC
T ss_pred             CCHHHHHHHHhhhchhhChhhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCC
Confidence            455566555443         445678999999999999863 232   5899988754433 34679999999999999


Q ss_pred             CCccceEEEEEeCCeEEEEEecCCCCCHHHHHhcCC-cccchhHHHHHHHHHHhhcc
Q 011696          423 RHLVSLVGYCISDDRRLLIYDYVPNNTLYFHLHGKW-QLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       423 pNIv~LlG~~~~~~~~~LV~Ey~~~GsL~~~L~~~~-~~~~~~~~~~~~l~~~~~~~  478 (479)
                      +|||+|+|+|.+++..+||||||.+|+|.++++.+. .+.+..+.++..-+..++.|
T Consensus        87 pnIv~l~g~~~~~~~~~iv~Ey~~~g~L~~~~~~~~~~l~~~~~~~i~~qia~gl~y  143 (299)
T d1jpaa_          87 PNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKY  143 (299)
T ss_dssp             TTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCccEEEEEeeCCEEEEEEEecCCCcceeeeccccCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999887643 34444444444444444443

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.7e-20  Score=178.81  Aligned_cols=113  Identities=19%  Similarity=0.244  Sum_probs=93.2

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+++.... +..++|.+|+++|++|+|+|||+|++++.+++..||||||
T Consensus         5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmEy   84 (271)
T d1nvra_           5 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY   84 (271)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             cceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEEec
Confidence            5688889999999999999986 5689999999975443 3345799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          445 VPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       445 ~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      |.+|+|+++|+.+..+.++...++..-++.++.||
T Consensus        85 ~~gg~L~~~l~~~~~l~e~~~~~i~~qi~~al~yl  119 (271)
T d1nvra_          85 CSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYL  119 (271)
T ss_dssp             CTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999998776666666666666666666554

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.1e-20  Score=180.54  Aligned_cols=100  Identities=27%  Similarity=0.450  Sum_probs=82.6

Q ss_pred             hcCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      .++|...+.||+|+||+||+|++.+++.||||+++.. ....++|.+|+++|++|+|+|||+|+|+|. ++..+||||||
T Consensus        12 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~-~~~~~iv~Ey~   89 (272)
T d1qpca_          12 RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIITEYM   89 (272)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTT-SSCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEECC
T ss_pred             HHHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccC-cCCHHHHHHHHHHHHhCCCCCEeEEEeeec-cCCeEEEEEeC
Confidence            4567788999999999999999988889999999754 344568999999999999999999999885 45678999999


Q ss_pred             CCCCHHHHHhcCCcccchhHHH
Q 011696          446 PNNTLYFHLHGKWQLGFDIRNH  467 (479)
Q Consensus       446 ~~GsL~~~L~~~~~~~~~~~~~  467 (479)
                      ++|+|.++++.+....+++..+
T Consensus        90 ~~g~L~~~~~~~~~~~l~~~~~  111 (272)
T d1qpca_          90 ENGSLVDFLKTPSGIKLTINKL  111 (272)
T ss_dssp             TTCBHHHHTTSHHHHTCCHHHH
T ss_pred             CCCcHHHHHhhcCCCCCCHHHH
Confidence            9999999887654333444333

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=6.3e-20  Score=178.70  Aligned_cols=113  Identities=16%  Similarity=0.206  Sum_probs=95.3

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      +.|...+.||+|+||+||+|+. .+|+.||||+++.......++|.+|+++|++|+|+|||+|+|+|.+++..+||||||
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmEy~   91 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFC   91 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEecC
Confidence            4577788999999999999986 568899999998776677788999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhc-CCcccchhHHHHHHHHHHhhccC
Q 011696          446 PNNTLYFHLHG-KWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       446 ~~GsL~~~L~~-~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      .+|+|.++++. +..+.++....+..-++.++.||
T Consensus        92 ~~g~L~~~~~~~~~~l~e~~~~~i~~qi~~gL~yl  126 (288)
T d2jfla1          92 AGGAVDAVMLELERPLTESQIQVVCKQTLDALNYL  126 (288)
T ss_dssp             TTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999998765 34456666666666666666554

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.2e-19  Score=177.06  Aligned_cols=112  Identities=15%  Similarity=0.232  Sum_probs=92.7

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      ++|...+.||+|+||+||+|+. .+|+.||||+++.......+.|.+|+++|++++|+|||+|+++|.+++..|||||||
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~   99 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL   99 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEec
Confidence            3588889999999999999985 569999999998666566678999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          446 PNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       446 ~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      .+|+|+++++.+ .+..+...++..-++.++.||
T Consensus       100 ~gg~L~~~~~~~-~l~~~~~~~i~~qi~~aL~yL  132 (293)
T d1yhwa1         100 AGGSLTDVVTET-CMDEGQIAAVCRECLQALEFL  132 (293)
T ss_dssp             TTCBHHHHHHHS-CCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHhhcc-CCCHHHHHHHHHHHHHHHHHH
Confidence            999999887654 344555555555555555543

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.3e-20  Score=182.66  Aligned_cols=114  Identities=19%  Similarity=0.190  Sum_probs=97.4

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      .++|...++||+|+||+||+|+. .+|+.||||+++.... ...++|.+|+++|++|+|+|||+|+|+|.+++..|||||
T Consensus         5 ~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iVmE   84 (322)
T d1s9ja_           5 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME   84 (322)
T ss_dssp             GGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             ccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEE
Confidence            46788889999999999999985 5688999999975433 334579999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          444 YVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       444 y~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      ||.+|+|+++|+++..+.++....+..-++.++.||
T Consensus        85 y~~gg~L~~~l~~~~~l~~~~~~~~~~qil~aL~yL  120 (322)
T d1s9ja_          85 HMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYL  120 (322)
T ss_dssp             CCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999998777777777777776666666664

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=1.2e-19  Score=178.37  Aligned_cols=114  Identities=21%  Similarity=0.182  Sum_probs=92.0

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      .+.|...++||+|+||+||+|+. .+|+.||||++..... ...+.|.+|+++|++|+|+|||+|+++|.+++..|||||
T Consensus         8 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvmE   87 (307)
T d1a06a_           8 RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQ   87 (307)
T ss_dssp             GGTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             ccceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEe
Confidence            35688889999999999999986 4688999999975443 334568999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          444 YVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       444 y~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      ||.+|+|+++|..+..+.++....+..-++.++.||
T Consensus        88 ~~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~al~yl  123 (307)
T d1a06a_          88 LVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYL  123 (307)
T ss_dssp             CCCSCBHHHHHHTCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCcHHHhhhcccCCCHHHHHHHHHHHHHHHHhh
Confidence            999999999998877777777777776666666554

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.78  E-value=1.4e-19  Score=181.08  Aligned_cols=113  Identities=19%  Similarity=0.282  Sum_probs=95.2

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+++.....+.+.|.+|+++|++|+|+|||+|+++|.+++..|||||||
T Consensus        26 ~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~  105 (350)
T d1koaa2          26 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFM  105 (350)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcC
Confidence            5788889999999999999985 568999999997665555678999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcC-CcccchhHHHHHHHHHHhhccC
Q 011696          446 PNNTLYFHLHGK-WQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       446 ~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      .+|+|+++|..+ ..+.++....+..-++.++.||
T Consensus       106 ~gg~L~~~l~~~~~~l~e~~~~~i~~qi~~aL~yl  140 (350)
T d1koaa2         106 SGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHM  140 (350)
T ss_dssp             CSCBHHHHHTCTTSCBCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999998643 4466666666666666666554

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.7e-19  Score=173.26  Aligned_cols=113  Identities=27%  Similarity=0.325  Sum_probs=93.8

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...+.||+|+||+||+|+. .+|+.||||+++...   ....++|.+|+++|++++|+|||+|+|+|.+++..+|||
T Consensus         6 ~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~ivm   85 (263)
T d2j4za1           6 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLIL   85 (263)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEEE
Confidence            4688889999999999999986 468899999986432   334567999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      |||.+|+|.++|+.+..+.++....+..-++.++.||
T Consensus        86 Ey~~~g~L~~~l~~~~~l~e~~~~~i~~qi~~al~~l  122 (263)
T d2j4za1          86 EYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC  122 (263)
T ss_dssp             ECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             eecCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999998766666666666666666655543

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.2e-19  Score=173.86  Aligned_cols=105  Identities=22%  Similarity=0.297  Sum_probs=82.2

Q ss_pred             ccccccCccceEEEEeCC---CCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCCC
Q 011696          373 NLLGEGGFGSVYKGYLPD---GREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVPN  447 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~~---g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~~  447 (479)
                      ++||+|+||+||+|++.+   ++.||||+++....  ...++|++|+++|++|+|+|||+|+|+|. .+..+||||||++
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~-~~~~~lvmE~~~~   91 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE-AESWMLVMEMAEL   91 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEE-SSSEEEEEECCTT
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEec-cCCEEEEEEcCCC
Confidence            579999999999998643   45799999964432  23467999999999999999999999995 4567899999999


Q ss_pred             CCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          448 NTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       448 GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |+|.++++.+..+.++...++..-+..++.|
T Consensus        92 g~L~~~l~~~~~l~~~~~~~i~~qi~~gl~y  122 (277)
T d1xbba_          92 GPLNKYLQQNRHVKDKNIIELVHQVSMGMKY  122 (277)
T ss_dssp             EEHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHhhccCCCHHHHHHHHHHHHHHHhh
Confidence            9999999887766666665555555555544

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.5e-19  Score=175.94  Aligned_cols=113  Identities=21%  Similarity=0.230  Sum_probs=94.5

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+++...   ....+.|.+|+++|++|+|+|||+|+++|.+++..||||
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivm   87 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL   87 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEEE
T ss_pred             CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEEE
Confidence            4688889999999999999986 568999999996432   234467999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      |||.+|+|.++++.+..+.++....+..-++.++.||
T Consensus        88 Ey~~gg~L~~~~~~~~~l~e~~~~~~~~qi~~al~yl  124 (288)
T d1uu3a_          88 SYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYL  124 (288)
T ss_dssp             CCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             EccCCCCHHHhhhccCCCCHHHHHHHHHHHHHHHHhh
Confidence            9999999999988777766666666666566665553

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.4e-19  Score=174.26  Aligned_cols=111  Identities=25%  Similarity=0.363  Sum_probs=85.3

Q ss_pred             cCcccccc-ccccCccceEEEEeC---CCCEEEEEEeecCCCc-chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEE
Q 011696          367 DGFADQNL-LGEGGFGSVYKGYLP---DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       367 ~~f~~~~~-IG~G~fG~Vykg~~~---~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      ++|...++ ||+|+||+||+|++.   ++..||||+++..... ..++|++|+++|++|+|+|||+|+|+|.+ +..|||
T Consensus         8 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~-~~~~lv   86 (285)
T d1u59a_           8 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLV   86 (285)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEE
T ss_pred             cCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeecc-CeEEEE
Confidence            45666664 999999999999763   3457999999755433 34679999999999999999999999964 568999


Q ss_pred             EecCCCCCHHHHHhcC-CcccchhHHHHHHHHHHhhcc
Q 011696          442 YDYVPNNTLYFHLHGK-WQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||||++|+|.++++.. ..+.++.+.++..-+..++.|
T Consensus        87 mE~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~gL~y  124 (285)
T d1u59a_          87 MEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKY  124 (285)
T ss_dssp             EECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999998654 345555555555444444444

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.3e-19  Score=174.46  Aligned_cols=99  Identities=24%  Similarity=0.410  Sum_probs=82.6

Q ss_pred             cCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecCC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYVP  446 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~~  446 (479)
                      ++|...+.||+|+||+||+|++.+++.||||+|+.. ....++|++|+.+|++++|+|||+|+|+|. ++..+||||||.
T Consensus        17 ~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~-~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~-~~~~~lv~Ey~~   94 (285)
T d1fmka3          17 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVTEYMS   94 (285)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTT-SSCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEECCCT
T ss_pred             HHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcc-cCCHHHHHHHHHHHHhcccCCEeEEEEEEe-cCCeEEEEEecC
Confidence            568888999999999999999988889999999744 344578999999999999999999999984 566899999999


Q ss_pred             CCCHHHHHhcCCcccchhHHH
Q 011696          447 NNTLYFHLHGKWQLGFDIRNH  467 (479)
Q Consensus       447 ~GsL~~~L~~~~~~~~~~~~~  467 (479)
                      +|+|.++++.+....++|..+
T Consensus        95 ~g~l~~~~~~~~~~~l~~~~~  115 (285)
T d1fmka3          95 KGSLLDFLKGETGKYLRLPQL  115 (285)
T ss_dssp             TCBHHHHHSHHHHTTCCHHHH
T ss_pred             CCchhhhhhhcccccchHHHH
Confidence            999999988654323444333

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=7.2e-20  Score=177.20  Aligned_cols=110  Identities=23%  Similarity=0.359  Sum_probs=86.2

Q ss_pred             hcCccccccccccCccceEEEEeCCCCEEEEEEeecCC--CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      .++|...++||+|+||+||+|++.  ..||||+++...  ....++|.+|+++|++++|+|||+++|+|.+ +..+||||
T Consensus         7 ~~~~~~~~~lG~G~fg~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~-~~~~lv~E   83 (276)
T d1uwha_           7 DGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA-PQLAIVTQ   83 (276)
T ss_dssp             TTCCCCCSEEEECSSCEEEEEESS--SEEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred             cccEEEEEEEeeCCCcEEEEEEEC--CEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEec-cEEEEEEe
Confidence            356778899999999999999863  359999997543  3445689999999999999999999999854 56799999


Q ss_pred             cCCCCCHHHHHhcC-CcccchhHHHHHHHHHHhhcc
Q 011696          444 YVPNNTLYFHLHGK-WQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       444 y~~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||++|+|+++|+.+ ..+.+....++..-+..++.|
T Consensus        84 y~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~gl~y  119 (276)
T d1uwha_          84 WCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDY  119 (276)
T ss_dssp             CCCEEEHHHHHHTSCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999754 345555555554444444444

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.3e-19  Score=174.04  Aligned_cols=109  Identities=20%  Similarity=0.295  Sum_probs=84.0

Q ss_pred             cCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeC-CeEEEEEecC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISD-DRRLLIYDYV  445 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~-~~~~LV~Ey~  445 (479)
                      ++|...++||+|+||.||+|.+ +|+.||||+++..  ...++|.+|+++|++|+|+|||+|+|+|.+. +..+|||||+
T Consensus         7 ~~~~~~~~lG~G~fg~Vy~~~~-~~~~vAvK~i~~~--~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~ey~   83 (262)
T d1byga_           7 KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYM   83 (262)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCC--C--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCC
T ss_pred             HHeEEeEEEecCCCeEEEEEEE-CCeEEEEEEECcH--HHHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEEecc
Confidence            4567778999999999999998 6788999999643  3456799999999999999999999999764 5679999999


Q ss_pred             CCCCHHHHHhcCCcccchhH--HHHHHHHHHhhcc
Q 011696          446 PNNTLYFHLHGKWQLGFDIR--NHNNGLLILTVLP  478 (479)
Q Consensus       446 ~~GsL~~~L~~~~~~~~~~~--~~~~~l~~~~~~~  478 (479)
                      ++|+|.++|+.++...+++.  .+...-+..++.|
T Consensus        84 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~y  118 (262)
T d1byga_          84 AKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEY  118 (262)
T ss_dssp             TTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccc
Confidence            99999999987654334443  3333333333333

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=5.2e-19  Score=174.79  Aligned_cols=112  Identities=17%  Similarity=0.230  Sum_probs=93.3

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      ++|...+.||+|+||+||+|+. .+|+.||||.++... .+...|.+|+++|++++|+|||+|++++.+++..|||||||
T Consensus         5 ~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~-~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvmE~~   83 (321)
T d1tkia_           5 EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFI   83 (321)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             cceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCc-ccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEecC
Confidence            5688889999999999999986 468899999997543 33456899999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCC-cccchhHHHHHHHHHHhhccC
Q 011696          446 PNNTLYFHLHGKW-QLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       446 ~~GsL~~~L~~~~-~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      .+|+|+++|+.+. .+.++....+..-++.++.||
T Consensus        84 ~gg~L~~~i~~~~~~l~e~~~~~i~~qi~~al~yL  118 (321)
T d1tkia_          84 SGLDIFERINTSAFELNEREIVSYVHQVCEALQFL  118 (321)
T ss_dssp             CCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999998654 456666666666666666554

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.76  E-value=4.1e-19  Score=177.72  Aligned_cols=113  Identities=18%  Similarity=0.214  Sum_probs=94.0

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+++.....+.+.|.+|+++|++|+|+|||+|+++|.+++..|||||||
T Consensus        29 d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~  108 (352)
T d1koba_          29 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFL  108 (352)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECC
T ss_pred             cceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcC
Confidence            4688889999999999999985 579999999998665555667999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCC-cccchhHHHHHHHHHHhhccC
Q 011696          446 PNNTLYFHLHGKW-QLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       446 ~~GsL~~~L~~~~-~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      .+|+|++++..+. .+.++....+..-++.++.||
T Consensus       109 ~gg~L~~~~~~~~~~l~e~~~~~i~~qi~~aL~yl  143 (352)
T d1koba_         109 SGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHM  143 (352)
T ss_dssp             CCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999998776543 456666666666666665553

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=4.1e-19  Score=171.29  Aligned_cols=110  Identities=21%  Similarity=0.226  Sum_probs=87.2

Q ss_pred             cccccccccCccceEEEEe-CCCCEEEEEEeecCC--CcchHhHHHHHHHHHhCCCCCccceEEEEEe----CCeEEEEE
Q 011696          370 ADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCIS----DDRRLLIY  442 (479)
Q Consensus       370 ~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~----~~~~~LV~  442 (479)
                      ...++||+|+||+||+|+. .+++.||||+++...  ..+.++|.+|+++|++|+|+|||+|+|+|.+    ++..+|||
T Consensus        12 ~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~ivm   91 (270)
T d1t4ha_          12 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT   91 (270)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEEE
Confidence            3456799999999999986 468899999997543  2334579999999999999999999999875    34578999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      |||.+|+|.++|+.+..+.++....+..-++.++.||
T Consensus        92 E~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~gl~yL  128 (270)
T d1t4ha_          92 ELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFL  128 (270)
T ss_dssp             ECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             eCCCCCcHHHHHhccccccHHHHHHHHHHHHHHHHHH
Confidence            9999999999998766666666665555555555543

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.76  E-value=5.4e-19  Score=171.04  Aligned_cols=113  Identities=20%  Similarity=0.319  Sum_probs=96.2

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCc---------chHhHHHHHHHHHhCC-CCCccceEEEEEeC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ---------GEREFKAEVEIISRIH-HRHLVSLVGYCISD  435 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~---------~~~~f~~Ei~il~~l~-HpNIv~LlG~~~~~  435 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+++.....         ..+.|++|+++|++|+ |+|||+++++|.++
T Consensus         3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~   82 (277)
T d1phka_           3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETN   82 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred             ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccC
Confidence            5788899999999999999985 57889999999754321         1235899999999997 99999999999999


Q ss_pred             CeEEEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          436 DRRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       436 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      +..|||||||++|||+++|+.+..+.++....+..-++.++.||
T Consensus        83 ~~~~ivmE~~~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~~l  126 (277)
T d1phka_          83 TFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICAL  126 (277)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEcCCCchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998877777777777777777777664

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=5.2e-19  Score=170.45  Aligned_cols=112  Identities=17%  Similarity=0.256  Sum_probs=86.8

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCc--chHhHHHHHHHHHhCCCCCccceEEEEEe--CCeEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ--GEREFKAEVEIISRIHHRHLVSLVGYCIS--DDRRLLI  441 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~--~~~~f~~Ei~il~~l~HpNIv~LlG~~~~--~~~~~LV  441 (479)
                      ++|...+.||+|+||+||+|+. .+|+.||||+++.....  +.+.|.+|+++|++|+|+|||+++++|.+  ++..|||
T Consensus         4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~iv   83 (269)
T d2java1           4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIV   83 (269)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEEE
T ss_pred             hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEEE
Confidence            5688889999999999999985 56899999999755432  33569999999999999999999999975  3457899


Q ss_pred             EecCCCCCHHHHHhcC----CcccchhHHHHHHHHHHhhcc
Q 011696          442 YDYVPNNTLYFHLHGK----WQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~----~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ||||.+|+|.++++..    ..+.++...++..-++.++.|
T Consensus        84 mEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~y  124 (269)
T d2java1          84 MEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKE  124 (269)
T ss_dssp             EECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             EecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999998642    334445555555545555444

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=6e-19  Score=173.40  Aligned_cols=112  Identities=21%  Similarity=0.249  Sum_probs=91.6

Q ss_pred             CccccccccccCccceEEEEe-CCCCEEEEEEeecCCCc---chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ---GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~---~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      .|...+.||+|+||+||+|+. .+|+.||||+++.....   ..++|++|+++|++|+|+|||+|+|+|.+++..|||||
T Consensus        16 ~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~E   95 (309)
T d1u5ra_          16 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVME   95 (309)
T ss_dssp             HEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEEE
Confidence            477788999999999999985 56889999999755432   23469999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          444 YVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       444 y~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      ||.+|+|..++..+..+.++....+..-++.++.||
T Consensus        96 ~~~~g~l~~~~~~~~~l~e~~~~~i~~qi~~aL~yL  131 (309)
T d1u5ra_          96 YCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYL  131 (309)
T ss_dssp             CCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCchHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999987776666666666666665555555553

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=9e-19  Score=172.01  Aligned_cols=91  Identities=30%  Similarity=0.586  Sum_probs=76.2

Q ss_pred             cCccccccccccCccceEEEEeCC-CC--EEEEEEeecCC-CcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCeEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPD-GR--EVAIKQLKIGG-GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~-g~--~VAVK~l~~~~-~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      ++|...++||+|+||+||+|++.+ |.  .||||+++... ....++|++|+++|+++ +|+|||+|+|+|.+++..+||
T Consensus        10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~iV   89 (309)
T d1fvra_          10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA   89 (309)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeEEE
Confidence            567788999999999999998643 43  47888886443 33456899999999999 799999999999999999999


Q ss_pred             EecCCCCCHHHHHhcC
Q 011696          442 YDYVPNNTLYFHLHGK  457 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~  457 (479)
                      ||||++|+|.++|+.+
T Consensus        90 ~ey~~~g~L~~~l~~~  105 (309)
T d1fvra_          90 IEYAPHGNLLDFLRKS  105 (309)
T ss_dssp             ECCCTTCBHHHHHHTT
T ss_pred             EEecCCCcHHHHHhhc
Confidence            9999999999999864

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=9.6e-19  Score=173.97  Aligned_cols=113  Identities=22%  Similarity=0.301  Sum_probs=95.7

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecC---CCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIG---GGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~---~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+++..   .....+.+++|+++|++++|+|||+|+++|.+++.+||||
T Consensus         5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv~   84 (337)
T d1o6la_           5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVM   84 (337)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccccce
Confidence            5688889999999999999985 57899999999643   2334567999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      |||.+|+|+++++.+..+..+....+..-++.++.||
T Consensus        85 ey~~gg~L~~~~~~~~~~~e~~~~~~~~qil~al~yl  121 (337)
T d1o6la_          85 EYANGGELFFHLSRERVFTEERARFYGAEIVSALEYL  121 (337)
T ss_dssp             ECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             eccCCCchhhhhhcccCCcHHHHHHHHHHHhhhhhhh
Confidence            9999999999998877776666666666666666553

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.5e-18  Score=168.19  Aligned_cols=91  Identities=32%  Similarity=0.506  Sum_probs=77.5

Q ss_pred             cCccccccccccCccceEEEEeCCC-----CEEEEEEeecCCCc-chHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDG-----REVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g-----~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~L  440 (479)
                      +.|...++||+|+||+||+|++.++     ..||||+++..... ..++|++|+++|++|+|+|||+|+|+|.+.+..++
T Consensus         7 ~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~~~   86 (283)
T d1mqba_           7 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMI   86 (283)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCceEE
Confidence            4577789999999999999987432     36999999755443 34579999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcC
Q 011696          441 IYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~  457 (479)
                      |||||.+|+|.+++..+
T Consensus        87 v~e~~~~~~l~~~~~~~  103 (283)
T d1mqba_          87 ITEYMENGALDKFLREK  103 (283)
T ss_dssp             EEECCTTEEHHHHHHHT
T ss_pred             EEEecccCcchhhhhcc
Confidence            99999999999887654

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.5e-18  Score=171.41  Aligned_cols=113  Identities=19%  Similarity=0.329  Sum_probs=94.0

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHH-hCCCCCccceEEEEEeCCeEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIIS-RIHHRHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~-~l~HpNIv~LlG~~~~~~~~~LV  441 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+++...   ..+.+.+++|+.+|. .++|+|||+|++++.+++..|||
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yiv   81 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFV   81 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEE
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEE
Confidence            5788889999999999999986 468899999996432   334456788887776 68999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          442 YDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       442 ~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      ||||++|+|.++|+.+..+.++....+..-++.++.||
T Consensus        82 mEy~~~g~L~~~i~~~~~~~e~~~~~~~~qi~~al~yl  119 (320)
T d1xjda_          82 MEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFL  119 (320)
T ss_dssp             EECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             EeecCCCcHHHHhhccCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999877777777777766666666654

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=1.1e-18  Score=170.73  Aligned_cols=98  Identities=23%  Similarity=0.421  Sum_probs=84.2

Q ss_pred             HHHHHHhcCccccccccccCccceEEEEeC------CCCEEEEEEeecCCCcc-hHhHHHHHHHHHhCCCCCccceEEEE
Q 011696          360 EELVKATDGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGGQG-EREFKAEVEIISRIHHRHLVSLVGYC  432 (479)
Q Consensus       360 eel~~~~~~f~~~~~IG~G~fG~Vykg~~~------~g~~VAVK~l~~~~~~~-~~~f~~Ei~il~~l~HpNIv~LlG~~  432 (479)
                      .++...+++|...+.||+|+||+||+|++.      +++.||||+++.....+ .++|.+|+++|++|+|+||++++|+|
T Consensus         6 ~~~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~   85 (301)
T d1lufa_           6 LSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVC   85 (301)
T ss_dssp             HHTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             hhccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeee
Confidence            344455678999999999999999999863      35689999997654443 45799999999999999999999999


Q ss_pred             EeCCeEEEEEecCCCCCHHHHHhcC
Q 011696          433 ISDDRRLLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       433 ~~~~~~~LV~Ey~~~GsL~~~L~~~  457 (479)
                      .+.+..++|||||.+|+|.++|+..
T Consensus        86 ~~~~~~~~v~e~~~~g~L~~~l~~~  110 (301)
T d1lufa_          86 AVGKPMCLLFEYMAYGDLNEFLRSM  110 (301)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHHT
T ss_pred             ccCCceEEEEEecCCCcHHHHHHhc
Confidence            9999999999999999999999753

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=2e-18  Score=170.22  Aligned_cols=112  Identities=21%  Similarity=0.248  Sum_probs=93.6

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecC---CCcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIG---GGQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~---~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+++..   .....+.|.+|+++|++++|+|||+|++++.+.+..||||
T Consensus         4 ~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivm   83 (316)
T d1fota_           4 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM   83 (316)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             hHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeEe
Confidence            4688889999999999999986 56899999999643   2334567999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||.+|+|.+++..+..+..+....+...++.++.|
T Consensus        84 E~~~gg~l~~~~~~~~~~~~~~~~~~~~qi~~al~~  119 (316)
T d1fota_          84 DYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEY  119 (316)
T ss_dssp             CCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHH
T ss_pred             eecCCccccccccccccccccHHHHHHHHHHHhhhh
Confidence            999999999998887776666665555555555544

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.5e-18  Score=169.03  Aligned_cols=107  Identities=21%  Similarity=0.287  Sum_probs=80.9

Q ss_pred             cccccccCccceEEEEeCCC----CEEEEEEeecCC-CcchHhHHHHHHHHHhCCCCCccceEEEEEeC-CeEEEEEecC
Q 011696          372 QNLLGEGGFGSVYKGYLPDG----REVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISD-DRRLLIYDYV  445 (479)
Q Consensus       372 ~~~IG~G~fG~Vykg~~~~g----~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~-~~~~LV~Ey~  445 (479)
                      .++||+|+||+||+|++.++    ..||||+++... ....++|++|+++|++|+|+|||+|+|+|.+. ...+||||||
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E~~  111 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYM  111 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEECC
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEEEe
Confidence            57899999999999987432    258999997543 33446899999999999999999999999875 4789999999


Q ss_pred             CCCCHHHHHhcCC-cccchhHHHHHHHHHHhhcc
Q 011696          446 PNNTLYFHLHGKW-QLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       446 ~~GsL~~~L~~~~-~~~~~~~~~~~~l~~~~~~~  478 (479)
                      ++|+|.++++.+. .+.+.++.++..-+..++.|
T Consensus       112 ~~g~l~~~~~~~~~~~~~~~~~~i~~qia~gL~~  145 (311)
T d1r0pa_         112 KHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKF  145 (311)
T ss_dssp             TTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHH
T ss_pred             ecCchhhhhccccccchHHHHHHHHHHHHHhhhh
Confidence            9999999988654 23334444444434444433

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.6e-18  Score=170.32  Aligned_cols=92  Identities=26%  Similarity=0.411  Sum_probs=79.7

Q ss_pred             hcCccccccccccCccceEEEEe------CCCCEEEEEEeecCCCc-chHhHHHHHHHHHhC-CCCCccceEEEEEeCCe
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL------PDGREVAIKQLKIGGGQ-GEREFKAEVEIISRI-HHRHLVSLVGYCISDDR  437 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~------~~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~  437 (479)
                      .++|...++||+|+||+||+|++      .+++.||||+++..... +..+|++|+++|+++ +|+|||+|+|+|.+.+.
T Consensus        22 ~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~~  101 (311)
T d1t46a_          22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGP  101 (311)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             HHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeCCE
Confidence            35677889999999999999985      23568999999865443 345799999999999 79999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcC
Q 011696          438 RLLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       438 ~~LV~Ey~~~GsL~~~L~~~  457 (479)
                      .+||||||.+|+|.++|+++
T Consensus       102 ~~lvmE~~~~g~l~~~l~~~  121 (311)
T d1t46a_         102 TLVITEYCCYGDLLNFLRRK  121 (311)
T ss_dssp             CEEEEECCTTEEHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHhc
Confidence            99999999999999999864

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.73  E-value=2.4e-18  Score=166.20  Aligned_cols=112  Identities=18%  Similarity=0.139  Sum_probs=90.4

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCc---chHhHHHHHHHHHhCCCCCccceEEEEEeCC----eE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ---GEREFKAEVEIISRIHHRHLVSLVGYCISDD----RR  438 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~---~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~----~~  438 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+++.....   ..++|.+|+++|++++|+|||++++++...+    ..
T Consensus         7 drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~~   86 (277)
T d1o6ya_           7 DRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLP   86 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEEE
T ss_pred             ceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCceE
Confidence            5688889999999999999985 57899999999754332   2346999999999999999999999998654    37


Q ss_pred             EEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          439 LLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||||||.+|+|.+++..+..+.++...++..-++.++.|
T Consensus        87 ~lvmE~~~g~~L~~~~~~~~~l~~~~~~~i~~qi~~al~~  126 (277)
T d1o6ya_          87 YIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNF  126 (277)
T ss_dssp             EEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCEehhhhcccCCCCHHHHHHHHHHHHHHHHH
Confidence            8999999999999988877666666655555555555544

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=7.2e-19  Score=172.67  Aligned_cols=91  Identities=25%  Similarity=0.409  Sum_probs=78.7

Q ss_pred             hcCccccccccccCccceEEEEeC------CCCEEEEEEeecCCCc-chHhHHHHHHHHHhCCCCCccceEEEEEeCCeE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGGQ-GEREFKAEVEIISRIHHRHLVSLVGYCISDDRR  438 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~------~g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~  438 (479)
                      .++|...+.||+|+||+||+|++.      +++.||||+++..... +...|++|+++|++++|+|||+++|+|..++..
T Consensus        19 ~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~   98 (308)
T d1p4oa_          19 REKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPT   98 (308)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSSC
T ss_pred             HHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecCCce
Confidence            356778899999999999999863      2568999999754433 334699999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhc
Q 011696          439 LLIYDYVPNNTLYFHLHG  456 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~L~~  456 (479)
                      +||||||.+|+|.++++.
T Consensus        99 ~lv~e~~~~g~l~~~~~~  116 (308)
T d1p4oa_          99 LVIMELMTRGDLKSYLRS  116 (308)
T ss_dssp             EEEEECCTTCBHHHHHHH
T ss_pred             eEEEeecCCCCHHHHHHh
Confidence            999999999999999875

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.1e-18  Score=169.40  Aligned_cols=92  Identities=25%  Similarity=0.449  Sum_probs=76.8

Q ss_pred             hcCccccccccccCccceEEEEeCC-C-----CEEEEEEeecCC-CcchHhHHHHHHHHHhC-CCCCccceEEEEEeCCe
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLPD-G-----REVAIKQLKIGG-GQGEREFKAEVEIISRI-HHRHLVSLVGYCISDDR  437 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~~-g-----~~VAVK~l~~~~-~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~~  437 (479)
                      .++|...++||+|+||+||+|++.+ +     ..||||++.... ....++|++|+++|.++ +|+|||+|+|+|.+.+.
T Consensus        36 ~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~  115 (325)
T d1rjba_          36 RENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGP  115 (325)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             HHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCCe
Confidence            3568888999999999999998632 2     269999986443 34456799999999998 89999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcC
Q 011696          438 RLLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       438 ~~LV~Ey~~~GsL~~~L~~~  457 (479)
                      .+||||||++|+|.++|+.+
T Consensus       116 ~~lv~Ey~~~g~L~~~l~~~  135 (325)
T d1rjba_         116 IYLIFEYCCYGDLLNYLRSK  135 (325)
T ss_dssp             CEEEEECCTTCBHHHHHHTT
T ss_pred             EEEEEEcCCCCcHHHHHHhc
Confidence            99999999999999999865

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.7e-18  Score=166.42  Aligned_cols=87  Identities=25%  Similarity=0.419  Sum_probs=71.4

Q ss_pred             cCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHH--HHHHHHhCCCCCccceEEEEEeCC----eEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKA--EVEIISRIHHRHLVSLVGYCISDD----RRLL  440 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~--Ei~il~~l~HpNIv~LlG~~~~~~----~~~L  440 (479)
                      ++|...++||+|+||+||+|++ +|+.||||+++..   ..++|.+  |+..+++++|+|||+|+|+|.+++    ..+|
T Consensus         3 ~~~~l~~~iG~G~fg~Vy~~~~-~g~~vAvK~~~~~---~~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~l   78 (303)
T d1vjya_           3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWL   78 (303)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECcc---chhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEE
Confidence            4567788999999999999997 7899999998642   2344444  555556789999999999998765    4789


Q ss_pred             EEecCCCCCHHHHHhcC
Q 011696          441 IYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~  457 (479)
                      |||||.+|+|+++|+++
T Consensus        79 v~Ey~~~g~L~~~l~~~   95 (303)
T d1vjya_          79 VSDYHEHGSLFDYLNRY   95 (303)
T ss_dssp             EEECCTTCBHHHHHHHC
T ss_pred             EEecccCCCHHHHHhcC
Confidence            99999999999999864

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=5e-18  Score=163.78  Aligned_cols=112  Identities=22%  Similarity=0.294  Sum_probs=79.5

Q ss_pred             cCccccccccccCccceEEEEeC--CC--CEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP--DG--REVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRL  439 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~--~g--~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~  439 (479)
                      ++|...+.||+|+||+||+|++.  ++  ..||||+++...   ....++|.+|+++|++|+|+|||+++|+|.+ +..+
T Consensus         8 ~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~-~~~~   86 (273)
T d1u46a_           8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT-PPMK   86 (273)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCE
T ss_pred             HHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-cchh
Confidence            45777889999999999999863  23  368999986432   2334689999999999999999999999965 5678


Q ss_pred             EEEecCCCCCHHHHHhcCC-cccchhHHHHHHHHHHhhccC
Q 011696          440 LIYDYVPNNTLYFHLHGKW-QLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~~-~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      ||||||.+|+|.++++.+. .+.++++.++..-+..++.||
T Consensus        87 lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~yl  127 (273)
T d1u46a_          87 MVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYL  127 (273)
T ss_dssp             EEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred             eeeeeecCcchhhhhhcccCCCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999998877543 455666655555555555443

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.71  E-value=5.7e-18  Score=164.05  Aligned_cols=113  Identities=17%  Similarity=0.211  Sum_probs=96.3

Q ss_pred             cCccccccccccCccceEEEEeCCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEec
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      ++|...++||+|+||+||+|+..+|+.||||+++....  ...+.|.+|+.+|++|+|+|||+|+++|.+++..+|||||
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~   81 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH   81 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             CCceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEEe
Confidence            56888899999999999999988899999999975432  2246799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          445 VPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       445 ~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      +.+++|..+++.+..+..+...++..-++.+|.||
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~L  116 (286)
T d1ob3a_          82 LDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYC  116 (286)
T ss_dssp             CSEEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ehhhhHHHHHhhcCCcchhhhHHHHHHHHHHHHHh
Confidence            99998888877666677777777777777776654

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1e-17  Score=161.35  Aligned_cols=112  Identities=21%  Similarity=0.247  Sum_probs=84.7

Q ss_pred             hcCccccccccccCccceEEEEeCC----CCEEEEEEeecCCCcc-hHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEE
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYLPD----GREVAIKQLKIGGGQG-EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~~~----g~~VAVK~l~~~~~~~-~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~L  440 (479)
                      .++|...++||+|+||+||+|++.+    +..||||+++...... .++|++|+++|++++|+|||+|+|+|. ++..+|
T Consensus         6 ~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~i   84 (273)
T d1mp8a_           6 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWI   84 (273)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEE
T ss_pred             HHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCeEEE
Confidence            3568888999999999999998632    3468999986544433 457999999999999999999999995 567899


Q ss_pred             EEecCCCCCHHHHHhcCC-cccchhHHHHHHHHHHhhcc
Q 011696          441 IYDYVPNNTLYFHLHGKW-QLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~~-~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |||||.+|+|+++++.+. .+.++....+..-+..++.|
T Consensus        85 v~E~~~~g~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~y  123 (273)
T d1mp8a_          85 IMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAY  123 (273)
T ss_dssp             EEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             EEEeccCCcHHhhhhccCCCCCHHHHHHHHHHHHHHhhh
Confidence            999999999998876543 34444444444444444443

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=6.4e-18  Score=164.84  Aligned_cols=108  Identities=20%  Similarity=0.295  Sum_probs=86.8

Q ss_pred             cccccccCccceEEEEe-CCCCEEEEEEeecCCCcc-----hHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEecC
Q 011696          372 QNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQG-----EREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYDYV  445 (479)
Q Consensus       372 ~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~-----~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~Ey~  445 (479)
                      .++||+|+||+||+|+. .+|+.||||+++......     .+.|++|+++|++++|+|||+|+++|.+++..|||||||
T Consensus         3 l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~~   82 (299)
T d1ua2a_           3 LDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFM   82 (299)
T ss_dssp             EEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECC
T ss_pred             ceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhhh
Confidence            46899999999999986 468999999996443221     346999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          446 PNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       446 ~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      .+|++..+++.+..+..+....+..-++.++.||
T Consensus        83 ~~~~~~~~~~~~~~l~~~~~~~~~~qil~aL~~l  116 (299)
T d1ua2a_          83 ETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYL  116 (299)
T ss_dssp             SEEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHH
T ss_pred             cchHHhhhhhcccCCCHHHHHHHHHHHHHHHHHh
Confidence            9999888877777777777777666666666554

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=1.5e-17  Score=166.07  Aligned_cols=113  Identities=21%  Similarity=0.241  Sum_probs=94.4

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~  442 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+++...   ....+.|++|+++|++|+|+|||++++++.+.+..++||
T Consensus        41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v~  120 (350)
T d1rdqe_          41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM  120 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeeccccccccccccccc
Confidence            4688889999999999999986 569999999996422   234467999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          443 DYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       443 Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      ||+.+|+|.++|..+..+..+....+..-++.+|.||
T Consensus       121 e~~~~g~l~~~l~~~~~l~e~~~~~i~~qi~~aL~yL  157 (350)
T d1rdqe_         121 EYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYL  157 (350)
T ss_dssp             ECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhHhhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999998776666666666666666666554

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.2e-17  Score=163.06  Aligned_cols=92  Identities=27%  Similarity=0.442  Sum_probs=73.5

Q ss_pred             cCccccccccccCccceEEEEeCC--------CCEEEEEEeecCCCc-chHhHHHHHHHHHhC-CCCCccceEEEEEeCC
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLPD--------GREVAIKQLKIGGGQ-GEREFKAEVEIISRI-HHRHLVSLVGYCISDD  436 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~~--------g~~VAVK~l~~~~~~-~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~~~  436 (479)
                      ++|...+.||+|+||+||+|+...        +..||||+++..... ..++|.+|+.+|.++ +|+|||+|+|+|.+++
T Consensus        13 ~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~~~   92 (299)
T d1fgka_          13 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDG   92 (299)
T ss_dssp             GGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             HHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccccccCC
Confidence            567778999999999999997522        246999999765543 346899999999998 8999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHhcCC
Q 011696          437 RRLLIYDYVPNNTLYFHLHGKW  458 (479)
Q Consensus       437 ~~~LV~Ey~~~GsL~~~L~~~~  458 (479)
                      ..++|||||.+|+|+++|+.+.
T Consensus        93 ~~~~v~e~~~~g~l~~~i~~~~  114 (299)
T d1fgka_          93 PLYVIVEYASKGNLREYLQARR  114 (299)
T ss_dssp             SCEEEECCCTTCBHHHHHHTTS
T ss_pred             eEEEEEEccCCCcHHHHHHhhc
Confidence            9999999999999999998653

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.69  E-value=1.9e-17  Score=166.15  Aligned_cols=113  Identities=22%  Similarity=0.282  Sum_probs=88.5

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCC---CcchHhHHH---HHHHHHhCCCCCccceEEEEEeCCeEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG---GQGEREFKA---EVEIISRIHHRHLVSLVGYCISDDRRL  439 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~---~~~~~~f~~---Ei~il~~l~HpNIv~LlG~~~~~~~~~  439 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||++....   ......+++   |+++|+.++|+|||+|+++|.+.+..|
T Consensus         4 ddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~~   83 (364)
T d1omwa3           4 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS   83 (364)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred             HhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEEE
Confidence            5788889999999999999986 468999999986322   122233444   477788889999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          440 LIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      ||||||.+|+|+++|+.+..+..+....+..-++.++.||
T Consensus        84 ivmE~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~yl  123 (364)
T d1omwa3          84 FILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHM  123 (364)
T ss_dssp             EEECCCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998776665555555555555555543

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.3e-17  Score=161.26  Aligned_cols=111  Identities=24%  Similarity=0.389  Sum_probs=82.5

Q ss_pred             cCccccccccccCccceEEEEeC-CCC----EEEEEEeecCC-CcchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYLP-DGR----EVAIKQLKIGG-GQGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLL  440 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~~-~g~----~VAVK~l~~~~-~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~L  440 (479)
                      ++|...++||+|+||+||+|++. +|+    .||||+++... ....++|++|+++|++|+|+|||+|+|+|.++ ..++
T Consensus         9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~-~~~~   87 (317)
T d1xkka_           9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQL   87 (317)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESS-SEEE
T ss_pred             HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC-CeeE
Confidence            35888899999999999999863 444    58999986443 34467899999999999999999999999764 5678


Q ss_pred             EEecCCCCCHHHHHhcC-CcccchhHHHHHHHHHHhhcc
Q 011696          441 IYDYVPNNTLYFHLHGK-WQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |+|||.+|+|.++++.+ ..+.++.+.++..-+..++.|
T Consensus        88 v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~y  126 (317)
T d1xkka_          88 ITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNY  126 (317)
T ss_dssp             EEECCTTCBHHHHHHHTSSSCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEeccCCcccccccccccCCCHHHHHHHHHHHHHHHHH
Confidence            89999999999887754 344444444444444444444

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.4e-17  Score=160.75  Aligned_cols=113  Identities=17%  Similarity=0.302  Sum_probs=86.6

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+++....  ...++|++|+++|++|+|+|||+++++|.+++..|||||
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e   81 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE   81 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEEEe
Confidence            5788889999999999999985 5789999999965432  234679999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhc-CCcccchhHHHHHHHHHHhhccC
Q 011696          444 YVPNNTLYFHLHG-KWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       444 y~~~GsL~~~L~~-~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      ||.+|.+..+... ...+.++...++..-++.++.||
T Consensus        82 ~~~~~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yL  118 (298)
T d1gz8a_          82 FLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC  118 (298)
T ss_dssp             CCSEEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCchhhhhhhhcccCCCHHHHHHHHHHHHHHHHHh
Confidence            9986644433222 23355566666666666666554

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=6.8e-17  Score=156.35  Aligned_cols=113  Identities=17%  Similarity=0.246  Sum_probs=94.6

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCCeEEEEEe
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDDRRLLIYD  443 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~~~~LV~E  443 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+++....  ...++|.+|+.+|++++|+|||+++++|.+.+..+||+|
T Consensus         2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~   81 (292)
T d1unla_           2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEee
Confidence            4688889999999999999985 5788999999975443  334679999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          444 YVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       444 y~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      |+.+++|..+++....+.++...++.+-++.++.||
T Consensus        82 ~~~~~~l~~~~~~~~~~~~~~~~~~~~q~~~aL~~l  117 (292)
T d1unla_          82 FCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFC  117 (292)
T ss_dssp             CCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             eccccccccccccccccchhHHHHHHHHHHHHHHHh
Confidence            999999998887766666666666666666666554

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=7.7e-17  Score=159.91  Aligned_cols=108  Identities=18%  Similarity=0.190  Sum_probs=85.7

Q ss_pred             cCcccc-ccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhC-CCCCccceEEEEEe----CCeEE
Q 011696          367 DGFADQ-NLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRI-HHRHLVSLVGYCIS----DDRRL  439 (479)
Q Consensus       367 ~~f~~~-~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l-~HpNIv~LlG~~~~----~~~~~  439 (479)
                      ++|... ++||+|+||+||+|+. .+|+.||||+++.     .+.+.+|+++|.++ +|+|||+|+++|.+    ++..|
T Consensus        11 ~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~-----~~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~~   85 (335)
T d2ozaa1          11 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL   85 (335)
T ss_dssp             GTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred             cCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECC-----cHHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEEE
Confidence            567654 5799999999999985 5689999999863     35688999987765 89999999999875    35578


Q ss_pred             EEEecCCCCCHHHHHhcCC--cccchhHHHHHHHHHHhhccC
Q 011696          440 LIYDYVPNNTLYFHLHGKW--QLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       440 LV~Ey~~~GsL~~~L~~~~--~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      ||||||.||+|+++|..+.  .+.++....+..-++.++.||
T Consensus        86 ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~yl  127 (335)
T d2ozaa1          86 IVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYL  127 (335)
T ss_dssp             EEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998653  455566666666666666554

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=9.1e-17  Score=156.51  Aligned_cols=97  Identities=29%  Similarity=0.421  Sum_probs=76.4

Q ss_pred             HHHHHhcCccccccccccCccceEEEEeC------CCCEEEEEEeecCCC-cchHhHHHHHHHHHhC-CCCCccceEEEE
Q 011696          361 ELVKATDGFADQNLLGEGGFGSVYKGYLP------DGREVAIKQLKIGGG-QGEREFKAEVEIISRI-HHRHLVSLVGYC  432 (479)
Q Consensus       361 el~~~~~~f~~~~~IG~G~fG~Vykg~~~------~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l-~HpNIv~LlG~~  432 (479)
                      ++....++|...++||+|+||+||+|++.      +++.||||+++.... .+.++|++|+++|.++ +|.|||+++++|
T Consensus         7 ~wei~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~   86 (299)
T d1ywna1           7 KWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGAC   86 (299)
T ss_dssp             HHBCCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             cccccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeeee
Confidence            33334567888999999999999999852      246799999975443 3445799999988887 789999999999


Q ss_pred             EeCC-eEEEEEecCCCCCHHHHHhcC
Q 011696          433 ISDD-RRLLIYDYVPNNTLYFHLHGK  457 (479)
Q Consensus       433 ~~~~-~~~LV~Ey~~~GsL~~~L~~~  457 (479)
                      .+.+ ..++|||||.+|+|.++|+.+
T Consensus        87 ~~~~~~~~iv~E~~~~g~L~~~l~~~  112 (299)
T d1ywna1          87 TKPGGPLMVIVEFCKFGNLSTYLRSK  112 (299)
T ss_dssp             CSTTSCCEEEEECCTTCBHHHHHHHT
T ss_pred             ccCCCeEEEEEEecCCCcHHHHHHhc
Confidence            8755 578999999999999999864

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=5.5e-17  Score=156.25  Aligned_cols=113  Identities=22%  Similarity=0.303  Sum_probs=89.7

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCc------chHhHHHHHHHHHhCC--CCCccceEEEEEeCCe
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQ------GEREFKAEVEIISRIH--HRHLVSLVGYCISDDR  437 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~------~~~~f~~Ei~il~~l~--HpNIv~LlG~~~~~~~  437 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+++.....      ..++|.+|+++|++++  |+|||++++++.+.+.
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~   83 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDS   83 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSE
T ss_pred             CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCe
Confidence            4688889999999999999985 57899999999643221      2235889999999996  8999999999999999


Q ss_pred             EEEEEecCCC-CCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          438 RLLIYDYVPN-NTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       438 ~~LV~Ey~~~-GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      .+|||||+.+ ++|++++..+..+.++....+..-++.++.||
T Consensus        84 ~~lv~e~~~~~~~l~~~~~~~~~l~e~~~~~~~~qi~~al~~l  126 (273)
T d1xwsa_          84 FVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHC  126 (273)
T ss_dssp             EEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeccCcchHHHHHhccCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999986 68888887666666665555555555555543

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=8.5e-17  Score=158.71  Aligned_cols=112  Identities=22%  Similarity=0.337  Sum_probs=89.8

Q ss_pred             cCccccccccccCccceEEEEe----CCCCEEEEEEeecCC----CcchHhHHHHHHHHHhCCC-CCccceEEEEEeCCe
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL----PDGREVAIKQLKIGG----GQGEREFKAEVEIISRIHH-RHLVSLVGYCISDDR  437 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~----~~g~~VAVK~l~~~~----~~~~~~f~~Ei~il~~l~H-pNIv~LlG~~~~~~~  437 (479)
                      ++|...++||+|+||+||+|+.    .+|+.||||+++...    ....+.|.+|+++|++++| +||+++++++.+.+.
T Consensus        24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~~  103 (322)
T d1vzoa_          24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK  103 (322)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred             hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCCc
Confidence            5688889999999999999974    247899999986432    2234579999999999976 799999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          438 RLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       438 ~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      .++|||||.+|+|+++++....+..+....+..-++.++.|
T Consensus       104 ~~~v~e~~~~~~L~~~i~~~~~~~e~~~~~~~~Qi~~al~~  144 (322)
T d1vzoa_         104 LHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEH  144 (322)
T ss_dssp             EEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred             eeeeeecccccHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999876665555555555555555544

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.5e-16  Score=153.53  Aligned_cols=114  Identities=17%  Similarity=0.309  Sum_probs=87.4

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCC--CcchHhHHHHHHHHHhCCCCCccceEEEEEeC-------
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGG--GQGEREFKAEVEIISRIHHRHLVSLVGYCISD-------  435 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~-------  435 (479)
                      .++|...++||+|+||+||+|+. .+|+.||||+++...  ....++|++|+++|++|+|+||++++++|...       
T Consensus         9 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~   88 (318)
T d3blha1           9 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   88 (318)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC--------
T ss_pred             cCCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeeccccccccc
Confidence            36788889999999999999986 578999999986433  33456799999999999999999999998653       


Q ss_pred             -CeEEEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          436 -DRRLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       436 -~~~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                       +..+||||||.+|++..+.+....+.++...++..-++.++.||
T Consensus        89 ~~~~~iv~e~~~~~~~~~~~~~~~~~~~~~~~~i~~qil~~l~~l  133 (318)
T d3blha1          89 KGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYI  133 (318)
T ss_dssp             --CEEEEEECCCEEHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEEeccCCCccchhhhcccccccHHHHHHHHHHHHHHHHh
Confidence             35789999999998877766666666666655555555555543

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=4.4e-16  Score=154.66  Aligned_cols=113  Identities=14%  Similarity=0.192  Sum_probs=88.2

Q ss_pred             hcCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeC-----Ce
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISD-----DR  437 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~-----~~  437 (479)
                      .++|...++||+|+||+||+|+. .+|+.||||+++....  ...+++.+|+++|++|+|+|||++++++...     +.
T Consensus        17 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~   96 (348)
T d2gfsa1          17 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN   96 (348)
T ss_dssp             ETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCC
T ss_pred             CCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCc
Confidence            35688889999999999999984 5799999999975433  2345799999999999999999999998643     34


Q ss_pred             EEEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          438 RLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       438 ~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      .++|+||+.+|+|+++++.+ .+.++....+..-++.+|.||
T Consensus        97 ~~~i~~~~~gg~L~~~~~~~-~l~e~~~~~i~~qil~aL~~L  137 (348)
T d2gfsa1          97 DVYLVTHLMGADLNNIVKCQ-KLTDDHVQFLIYQILRGLKYI  137 (348)
T ss_dssp             CCEEEEECCSEEHHHHHTTC-CCCHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEeecCCchhhhcccc-cccHHHHHHHHHHHHHHHHHH
Confidence            57788899999999998754 355555556665566665553

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.59  E-value=8.2e-16  Score=151.56  Aligned_cols=84  Identities=19%  Similarity=0.361  Sum_probs=72.5

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCC-CCCccceEEEEEeC--CeEEEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIH-HRHLVSLVGYCISD--DRRLLIY  442 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~-HpNIv~LlG~~~~~--~~~~LV~  442 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+++..   ..+++.+|+++|++|+ |+||++|+++|...  +..+|||
T Consensus        35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~---~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v~  111 (328)
T d3bqca1          35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV---KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVF  111 (328)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSS---CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEEE
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHH---HHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEEE
Confidence            5688889999999999999985 56889999999642   3567999999999995 99999999999854  4588999


Q ss_pred             ecCCCCCHHHH
Q 011696          443 DYVPNNTLYFH  453 (479)
Q Consensus       443 Ey~~~GsL~~~  453 (479)
                      |||.+|+|..+
T Consensus       112 e~~~~~~L~~~  122 (328)
T d3bqca1         112 EHVNNTDFKQL  122 (328)
T ss_dssp             ECCCSCBGGGT
T ss_pred             eecCCCcHHHH
Confidence            99999999654

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=8.4e-16  Score=152.78  Aligned_cols=112  Identities=17%  Similarity=0.214  Sum_probs=84.3

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC-cchHhHHHHHHHHHhCCCCCccceEEEEEeCC----eEEE
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG-QGEREFKAEVEIISRIHHRHLVSLVGYCISDD----RRLL  440 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~-~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~----~~~L  440 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+++.... ...++|++|+++|++|+|+|||+++++|....    ..++
T Consensus         8 ~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~~   87 (345)
T d1pmea_           8 PRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVY   87 (345)
T ss_dssp             TTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEE
T ss_pred             CCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceEE
Confidence            4577889999999999999985 5799999999975433 33457999999999999999999999997653    2356


Q ss_pred             EEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          441 IYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      |+||+.+|+|++++..+ .+.+++...+..-++.++.||
T Consensus        88 l~~~~~~g~L~~~l~~~-~l~~~~i~~i~~qil~al~yL  125 (345)
T d1pmea_          88 LVTHLMGADLYKLLKTQ-HLSNDHICYFLYQILRGLKYI  125 (345)
T ss_dssp             EEEECCCEEHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeecCCchhhhhhcC-CCCHHHHHHHHHHHHHHHHHH
Confidence            66778899999998754 355666666666666666554

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1e-15  Score=152.44  Aligned_cols=108  Identities=27%  Similarity=0.383  Sum_probs=80.5

Q ss_pred             CccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEEEeCC------eEEE
Q 011696          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDD------RRLL  440 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~------~~~L  440 (479)
                      +|...++||+|+||+||+|+. .+|+.||||+++...    +.+.+|+++|++|+|+|||+++++|....      .++|
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~----~~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~l   96 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK----RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNL   96 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS----SSCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEE
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccc----hHHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEE
Confidence            466778999999999999996 468999999997532    23458999999999999999999996532      4689


Q ss_pred             EEecCCCCCHHHHHh---cCCcccchhHHHHHHHHHHhhccC
Q 011696          441 IYDYVPNNTLYFHLH---GKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       441 V~Ey~~~GsL~~~L~---~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      |||||.+|.+..+++   .+..+.++....+..-++.++.||
T Consensus        97 v~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yL  138 (350)
T d1q5ka_          97 VLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYI  138 (350)
T ss_dssp             EEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999775444433   333455555566666666666554

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=9.4e-16  Score=152.32  Aligned_cols=111  Identities=18%  Similarity=0.226  Sum_probs=79.3

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeCC------e
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISDD------R  437 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~~------~  437 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+++....  ...+.+++|+++|++|+|+|||+|+++|...+      .
T Consensus        18 ~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~~   97 (346)
T d1cm8a_          18 AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTD   97 (346)
T ss_dssp             SSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCC
T ss_pred             CcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccce
Confidence            5688889999999999999985 5699999999975432  23457999999999999999999999998655      4


Q ss_pred             EEEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhccC
Q 011696          438 RLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLPL  479 (479)
Q Consensus       438 ~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  479 (479)
                      .||||||| +++|.++++. ..+.++....+..-++.++.||
T Consensus        98 ~~lv~e~~-~~~l~~~~~~-~~l~~~~~~~~~~qi~~aL~~L  137 (346)
T d1cm8a_          98 FYLVMPFM-GTDLGKLMKH-EKLGEDRIQFLVYQMLKGLRYI  137 (346)
T ss_dssp             CEEEEECC-SEEHHHHHHH-CCCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecc-cccHHHHHHh-ccccHHHHHHHHHHHHHHHHHH
Confidence            69999999 5677666553 3455555555555555555543

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.5e-15  Score=149.90  Aligned_cols=109  Identities=17%  Similarity=0.228  Sum_probs=78.8

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCC--cchHhHHHHHHHHHhCCCCCccceEEEEEeC------Ce
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGG--QGEREFKAEVEIISRIHHRHLVSLVGYCISD------DR  437 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~--~~~~~f~~Ei~il~~l~HpNIv~LlG~~~~~------~~  437 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||+++....  ...+++.+|+++|++++|+|||+|+++|...      +.
T Consensus        17 ~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~   96 (355)
T d2b1pa1          17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQD   96 (355)
T ss_dssp             TTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCE
T ss_pred             CCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCce
Confidence            5688889999999999999986 4689999999975432  2335799999999999999999999999743      57


Q ss_pred             EEEEEecCCCCCHHHHHhcCCcccchhHHHHHHHHHHhhcc
Q 011696          438 RLLIYDYVPNNTLYFHLHGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       438 ~~LV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      .|||||||.+| |++.++++  +.++...++..-++.++.|
T Consensus        97 ~~iv~Ey~~~~-l~~~~~~~--~~~~~i~~~~~qil~gl~~  134 (355)
T d2b1pa1          97 VYLVMELMDAN-LCQVIQME--LDHERMSYLLYQMLCGIKH  134 (355)
T ss_dssp             EEEEEECCSEE-HHHHHTSC--CCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeccchH-HHHhhhcC--CCHHHHHHHHHHHHHHHHH
Confidence            79999999765 54455433  3334444444444444443

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=8.3e-15  Score=142.57  Aligned_cols=113  Identities=18%  Similarity=0.244  Sum_probs=80.0

Q ss_pred             hcCccccccccccCccceEEEEe-CC-CCEEEEEEeecCC--CcchHhHHHHHHHHHhC---CCCCccceEEEEEe----
Q 011696          366 TDGFADQNLLGEGGFGSVYKGYL-PD-GREVAIKQLKIGG--GQGEREFKAEVEIISRI---HHRHLVSLVGYCIS----  434 (479)
Q Consensus       366 ~~~f~~~~~IG~G~fG~Vykg~~-~~-g~~VAVK~l~~~~--~~~~~~f~~Ei~il~~l---~HpNIv~LlG~~~~----  434 (479)
                      .++|...++||+|+||+||+|+. .+ ++.||||+++...  .....++++|+++|++|   +|+|||+|+++|..    
T Consensus         6 ~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~   85 (305)
T d1blxa_           6 DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTD   85 (305)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECS
T ss_pred             cCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccc
Confidence            36788889999999999999985 33 5679999996433  22334678888877765   89999999999863    


Q ss_pred             -CCeEEEEEecCCCCCHHHHHhcC-CcccchhHHHHHHHHHHhhcc
Q 011696          435 -DDRRLLIYDYVPNNTLYFHLHGK-WQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       435 -~~~~~LV~Ey~~~GsL~~~L~~~-~~~~~~~~~~~~~l~~~~~~~  478 (479)
                       ....+||||||.+|+|..+...+ ..+.++....+..-++.++.|
T Consensus        86 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~y  131 (305)
T d1blxa_          86 RETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDF  131 (305)
T ss_dssp             SEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             cCceEEEEEEeccCCchhhhhhccCCCCCHHHHHHHHHHHHHHHHH
Confidence             23578999999998876554433 233444444444444444444

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.51  E-value=1.9e-14  Score=139.67  Aligned_cols=109  Identities=15%  Similarity=0.166  Sum_probs=85.9

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCC-CCccceEEEEEeCCeEEEEEec
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHH-RHLVSLVGYCISDDRRLLIYDY  444 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~H-pNIv~LlG~~~~~~~~~LV~Ey  444 (479)
                      ++|...++||+|+||+||+|+. .+|+.||||.+....  +.+++.+|+++|+.|+| .||+.|++++.++...++||||
T Consensus         5 ~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme~   82 (293)
T d1csna_           5 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDL   82 (293)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEEC
T ss_pred             CceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEcccc--CcHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEEe
Confidence            5688889999999999999985 468899999886432  33568899999999965 8999999999999999999999


Q ss_pred             CCCCCHHHHHhcCC-cccchhHHHHHHHHHHhhcc
Q 011696          445 VPNNTLYFHLHGKW-QLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       445 ~~~GsL~~~L~~~~-~~~~~~~~~~~~l~~~~~~~  478 (479)
                      | +|+|.++++... .+.++...++...++.++.|
T Consensus        83 ~-~~~l~~~~~~~~~~~~~~~~~~i~~q~~~~l~~  116 (293)
T d1csna_          83 L-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQS  116 (293)
T ss_dssp             C-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             c-CCCHHHHHHhhccchhhHHHHHHHHHHHHHHHH
Confidence            9 689988887543 45555555555555554444

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=3.1e-14  Score=138.23  Aligned_cols=109  Identities=17%  Similarity=0.251  Sum_probs=79.4

Q ss_pred             cCccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCccceEEEE-EeCCeEEEEEec
Q 011696          367 DGFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYC-ISDDRRLLIYDY  444 (479)
Q Consensus       367 ~~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv~LlG~~-~~~~~~~LV~Ey  444 (479)
                      ++|...+.||+|+||+||+|+. .+|+.||||+++...  ..++|.+|+++|++++|.|+|.++++| .+++..+|||||
T Consensus         7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~--~~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme~   84 (299)
T d1ckia_           7 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMEL   84 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCT--TSCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEEC
T ss_pred             CEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhc--cCHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEEE
Confidence            4588889999999999999985 568899999987543  234689999999999887766665555 567778899999


Q ss_pred             CCCCCHHHHH-hcCCcccchhHHHHHHHHHHhhcc
Q 011696          445 VPNNTLYFHL-HGKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       445 ~~~GsL~~~L-~~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                      |.+ +|.+++ ..+..+.+++..++..-++.++.|
T Consensus        85 ~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~  118 (299)
T d1ckia_          85 LGP-SLEDLFNFCSRKFSLKTVLLLADQMISRIEY  118 (299)
T ss_dssp             CCC-BHHHHHHHTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             cCC-chhhhhhhccCCCcHHHHHHHHHHHHHHHHH
Confidence            955 554444 344455566655555555555544

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.12  E-value=3.9e-11  Score=118.68  Aligned_cols=110  Identities=14%  Similarity=0.146  Sum_probs=74.7

Q ss_pred             CccccccccccCccceEEEEe-CCCCEEEEEEeecCCCcchHhHHHHHHHHHhCC-----------CCCccceEEEEEe-
Q 011696          368 GFADQNLLGEGGFGSVYKGYL-PDGREVAIKQLKIGGGQGEREFKAEVEIISRIH-----------HRHLVSLVGYCIS-  434 (479)
Q Consensus       368 ~f~~~~~IG~G~fG~Vykg~~-~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~-----------HpNIv~LlG~~~~-  434 (479)
                      +|...++||+|+||+||+|+. .+|+.||||+++... ...+.+.+|+++|++++           |.|||++++++.. 
T Consensus        14 rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~-~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~   92 (362)
T d1q8ya_          14 RYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK-VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHK   92 (362)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEE
T ss_pred             cEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccc-cchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeec
Confidence            377889999999999999985 578999999997432 23457889999988875           4789999998864 


Q ss_pred             -CCeEEEEEecCCCCCHHHHH-h--cCCcccchhHHHHHHHHHHhhcc
Q 011696          435 -DDRRLLIYDYVPNNTLYFHL-H--GKWQLGFDIRNHNNGLLILTVLP  478 (479)
Q Consensus       435 -~~~~~LV~Ey~~~GsL~~~L-~--~~~~~~~~~~~~~~~l~~~~~~~  478 (479)
                       ....++||+|+..+.+..++ .  ....+.+.+..+....++.++.|
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~  140 (362)
T d1q8ya_          93 GPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDY  140 (362)
T ss_dssp             ETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             cccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHH
Confidence             35667777777665543222 2  22333444444444444444443

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.11  E-value=3e-11  Score=108.99  Aligned_cols=77  Identities=18%  Similarity=0.316  Sum_probs=59.2

Q ss_pred             ccccccccCccceEEEEeCCCCEEEEEEeecCCCc------------------chHhHHHHHHHHHhCCCCCccceEEEE
Q 011696          371 DQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQ------------------GEREFKAEVEIISRIHHRHLVSLVGYC  432 (479)
Q Consensus       371 ~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~------------------~~~~f~~Ei~il~~l~HpNIv~LlG~~  432 (479)
                      .+++||+|+||+||+|+..+|+.||||.++.....                  ....+.+|+..|.+++|.||+.++++.
T Consensus         4 vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~~   83 (191)
T d1zara2           4 IGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAWE   83 (191)
T ss_dssp             EEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEEE
T ss_pred             hCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEec
Confidence            46889999999999999888999999987532110                  012356788999999999999987663


Q ss_pred             EeCCeEEEEEecCCCCCHH
Q 011696          433 ISDDRRLLIYDYVPNNTLY  451 (479)
Q Consensus       433 ~~~~~~~LV~Ey~~~GsL~  451 (479)
                          ..+|||||+.++.+.
T Consensus        84 ----~~~lvme~~~~~~~~   98 (191)
T d1zara2          84 ----GNAVLMELIDAKELY   98 (191)
T ss_dssp             ----TTEEEEECCCCEEGG
T ss_pred             ----CCEEEEEeecccccc
Confidence                237999999987663

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.32  E-value=0.00071  Score=61.75  Aligned_cols=93  Identities=11%  Similarity=0.010  Sum_probs=67.4

Q ss_pred             HHHHHHhcCccccccccccCccceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCC-CCCccceEEEEEeCCeE
Q 011696          360 EELVKATDGFADQNLLGEGGFGSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIH-HRHLVSLVGYCISDDRR  438 (479)
Q Consensus       360 eel~~~~~~f~~~~~IG~G~fG~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~-HpNIv~LlG~~~~~~~~  438 (479)
                      .|+....++|...+..+-+..+.||+... +++.+.||+..........++.+|+.+|..|. |--+-++++++.+++..
T Consensus         7 ~~l~~~~~~~~~~~~~~G~s~~~v~rv~~-~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~~   85 (263)
T d1j7la_           7 PELKKLIEKYRCVKDTEGMSPAKVYKLVG-ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWS   85 (263)
T ss_dssp             HHHHHHHTTSEEEECSCCCSSSEEEEEEC-SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEE
T ss_pred             HHHHHhhhceEEEEcCCCCCCCcEEEEEe-CCCeEEEEEcCCCcccchhhHHHHHHHHHHHhccCCCCcEEEEEecCCce
Confidence            45666666676555444444568999875 66678888876544444557889999888773 44467889999989999


Q ss_pred             EEEEecCCCCCHHHH
Q 011696          439 LLIYDYVPNNTLYFH  453 (479)
Q Consensus       439 ~LV~Ey~~~GsL~~~  453 (479)
                      +|||||+++..+.+.
T Consensus        86 ~lv~~~l~G~~~~~~  100 (263)
T d1j7la_          86 NLLMSEADGVLCSEE  100 (263)
T ss_dssp             EEEEECCSSEEHHHH
T ss_pred             EEEEEeccccccccc
Confidence            999999999888654

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=95.22  E-value=0.012  Score=52.82  Aligned_cols=75  Identities=16%  Similarity=0.155  Sum_probs=54.7

Q ss_pred             cccccCc-cceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCC--CCccceEEEEEeCCeEEEEEecCCCCCH
Q 011696          374 LLGEGGF-GSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHH--RHLVSLVGYCISDDRRLLIYDYVPNNTL  450 (479)
Q Consensus       374 ~IG~G~f-G~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~H--pNIv~LlG~~~~~~~~~LV~Ey~~~GsL  450 (479)
                      .+..|.. +.||+...++|..+.||.....   ...++.+|+++|+.|..  -.+-++++++.+++..++||||+++.+|
T Consensus        17 ~~~~G~s~~~v~r~~~~~~~~~vlK~~~~~---~~~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~~~i~G~~~   93 (255)
T d1nd4a_          17 QQTIGCSDAAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDL   93 (255)
T ss_dssp             ECSCTTSSCEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEET
T ss_pred             EcCCcccCCeEEEEEeCCCCEEEEEeCCcc---CHhHHHHHHHHHHHHHhcCCCCCceeeecccccceEEEEEeeecccc
Confidence            3455553 5789998877888888876533   23457788888877743  3356789998888889999999988766


Q ss_pred             H
Q 011696          451 Y  451 (479)
Q Consensus       451 ~  451 (479)
                      .
T Consensus        94 ~   94 (255)
T d1nd4a_          94 L   94 (255)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=94.48  E-value=0.049  Score=52.66  Aligned_cols=76  Identities=16%  Similarity=0.244  Sum_probs=49.1

Q ss_pred             ccccccCccceEEEEeCC-CCEEEEEEee----cCCC---cchHhHHHHHHHHHhC-CC--CCccceEEEEEeCCeEEEE
Q 011696          373 NLLGEGGFGSVYKGYLPD-GREVAIKQLK----IGGG---QGEREFKAEVEIISRI-HH--RHLVSLVGYCISDDRRLLI  441 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~~-g~~VAVK~l~----~~~~---~~~~~f~~Ei~il~~l-~H--pNIv~LlG~~~~~~~~~LV  441 (479)
                      +.||.|....||+....+ |+.|+||+-.    ....   ...+...+|+++|+.+ .|  ..+.+++++  +.+..+||
T Consensus        32 ~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~~--d~~~~~lv  109 (392)
T d2pula1          32 QEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVTV  109 (392)
T ss_dssp             EECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEEE
T ss_pred             EEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEEEE--cCCCCEEE
Confidence            468999999999998644 6789999642    1111   1223456688777766 33  445566555  46677899


Q ss_pred             EecCCCCCH
Q 011696          442 YDYVPNNTL  450 (479)
Q Consensus       442 ~Ey~~~GsL  450 (479)
                      |||+.+..+
T Consensus       110 mE~L~~~~~  118 (392)
T d2pula1         110 MEDLSHLKI  118 (392)
T ss_dssp             ECCCTTSEE
T ss_pred             EeccCCccc
Confidence            999987654

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=87.83  E-value=0.19  Score=48.08  Aligned_cols=72  Identities=21%  Similarity=0.278  Sum_probs=48.7

Q ss_pred             ccccccCccceEEEEeCCC--------CEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCcc-ceEEEEEeCCeEEEEEe
Q 011696          373 NLLGEGGFGSVYKGYLPDG--------REVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLV-SLVGYCISDDRRLLIYD  443 (479)
Q Consensus       373 ~~IG~G~fG~Vykg~~~~g--------~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv-~LlG~~~~~~~~~LV~E  443 (479)
                      +.|+.|-.-.+|+..+.++        +.|.++..- . .....+..+|.++++.+.--+|+ +++|+|.  +  .+|||
T Consensus        48 ~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g-~-~~~~idr~~E~~i~~~ls~~gl~Pkll~~~~--~--g~I~e  121 (395)
T d1nw1a_          48 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYF-N-PETESHLVAESVIFTLLSERHLGPKLYGIFS--G--GRLEE  121 (395)
T ss_dssp             EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEEC-S-CCCHHHHHHHHHHHHHHHHTTSSSCEEEEET--T--EEEEC
T ss_pred             EEcCCccccceEEEEeCCCCccccCCCCcEEEEecC-C-cchhhHHHHHHHHHHHHHhCCCCCeEEEEcC--C--ceEEE
Confidence            4577888889999887543        345555543 2 22334567899899888544555 8888873  2  68999


Q ss_pred             cCCCCCH
Q 011696          444 YVPNNTL  450 (479)
Q Consensus       444 y~~~GsL  450 (479)
                      |+++..|
T Consensus       122 fi~g~~l  128 (395)
T d1nw1a_         122 YIPSRPL  128 (395)
T ss_dssp             CCCEEEC
T ss_pred             EeccccC
Confidence            9987555

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=87.44  E-value=0.64  Score=42.96  Aligned_cols=69  Identities=12%  Similarity=0.094  Sum_probs=47.7

Q ss_pred             cceEEEEeCCCCEEEEEEeecCCCcchHhHHHHHHHHHhCCCCCcc--ceEE-----EEEeCCeEEEEEecCCCCCH
Q 011696          381 GSVYKGYLPDGREVAIKQLKIGGGQGEREFKAEVEIISRIHHRHLV--SLVG-----YCISDDRRLLIYDYVPNNTL  450 (479)
Q Consensus       381 G~Vykg~~~~g~~VAVK~l~~~~~~~~~~f~~Ei~il~~l~HpNIv--~LlG-----~~~~~~~~~LV~Ey~~~GsL  450 (479)
                      ..||+.++.+|+.|++|..+.+ ....+++..|+++|..|...+|-  ..+.     ++..++..+.|++|+.|..+
T Consensus        36 N~vy~v~~~dg~~~VlK~~rp~-~~s~~~i~~E~~~l~~L~~~gipv~~p~~~~g~~~~~~~~~~~~l~~~~~G~~~  111 (325)
T d1zyla1          36 NRVYQFQDEDRRRFVVKFYRPE-RWTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGGRQF  111 (325)
T ss_dssp             SEEEEECCTTCCCEEEEEECTT-TSCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCCCEEC
T ss_pred             ceeEEEEcCCCCEEEEEEeCCC-CCCHHHHHHHHHHHHHHHhcCCCCCCceecCCCeeeeeeeEEEEEEeecCCcCC
Confidence            4799999989999999987643 33456788899888887544432  1111     22345667889999986443