BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011697
         (479 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q68FJ8|TM1L2_XENLA TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE=2 SV=1
          Length = 507

 Score = 48.9 bits (115), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 77/162 (47%), Gaps = 26/162 (16%)

Query: 1   MQRYGVQFPKRSPDA-APIFTPPVS----------HPTLGQAQASYGMPSNSS------- 42
           ++R G++FP    DA +PI TP  S          H +  Q + S+   SNS        
Sbjct: 144 LKRKGIEFPMADLDALSPIHTPQRSVPEVDPATNMHTSQTQKRDSFSNLSNSKSTSTPYT 203

Query: 43  ------RRLDETMATEVETLSF--SSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDL 94
                   +   ++   E +    S LD +R  ++++S+ML  + P    A   E++ DL
Sbjct: 204 APGGPPPNVGGPISANSEQIGRLRSELDIVRGNVKVMSEMLTEMTPGQEGASDLELLQDL 263

Query: 95  VSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHD 136
              CR+ Q++++++++   +EE+    L +ND L N+  +++
Sbjct: 264 NRTCRTMQERIVELISRVSNEEVTEELLHVNDDLNNVFLRYE 305


>sp|Q5SRX1|TM1L2_MOUSE TOM1-like protein 2 OS=Mus musculus GN=Tom1l2 PE=1 SV=1
          Length = 507

 Score = 44.3 bits (103), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 75/160 (46%), Gaps = 24/160 (15%)

Query: 1   MQRYGVQFPKRSPDA-APIFTPPVSHPTL--------GQAQ-------------ASYGMP 38
           ++R G++FP    DA +PI TP  S P +         Q Q             ASY   
Sbjct: 144 LKRRGIEFPMADLDALSPIHTPQRSVPEMDPAATIPRSQTQPRTTAGTYSSPPPASYSTL 203

Query: 39  SNSSRRLDETMATEVETLSF--SSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVS 96
              +  +   +    E ++   S LD +R   +++S+ML  + P   ++   E++ +L  
Sbjct: 204 QAPALSVTGPITANSEQIARLRSELDIVRGNTKVMSEMLTEMVPGQEDSSDLELLQELNR 263

Query: 97  RCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHD 136
            CR+ Q +++++++   +EE+    L +ND L N+  +++
Sbjct: 264 TCRAMQHRIVELISRVSNEEVTEELLHVNDDLNNVFLRYE 303


>sp|Q6ZVM7|TM1L2_HUMAN TOM1-like protein 2 OS=Homo sapiens GN=TOM1L2 PE=1 SV=1
          Length = 507

 Score = 43.9 bits (102), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 24/160 (15%)

Query: 1   MQRYGVQFPKRSPDA-APIFTPPVSHPTL--------GQAQASYGMPSNSSRRLDETMAT 51
           ++R GV+FP    DA +PI TP  S P +         Q+Q      S SS       A 
Sbjct: 144 LKRKGVEFPMADLDALSPIHTPQRSVPEVDPAATMPRSQSQQRTSAGSYSSPPPAPYSAP 203

Query: 52  EVETLSF---------------SSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVS 96
           +   LS                S LD +R   +++S+ML  + P   ++   E++ +L  
Sbjct: 204 QAPALSVTGPITANSEQIARLRSELDVVRGNTKVMSEMLTEMVPGQEDSSDLELLQELNR 263

Query: 97  RCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHD 136
            CR+ Q++++++++   +EE+    L +ND L N+  +++
Sbjct: 264 TCRAMQQRIVELISRVSNEEVTEELLHVNDDLNNVFLRYE 303


>sp|O88746|TOM1_MOUSE Target of Myb protein 1 OS=Mus musculus GN=Tom1 PE=1 SV=1
          Length = 492

 Score = 41.2 bits (95), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 62/123 (50%), Gaps = 14/123 (11%)

Query: 59  SSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELL 118
           S L+ +   + ++S+ML  + P+  E    E++ +L   CR+ Q+++++++    +E+L 
Sbjct: 222 SELEMVSGNVRVMSEMLTELVPTQVEPADLELLQELNRTCRAMQQRILELIPRISNEQLT 281

Query: 119 GRGLELNDILQNLLAKHDAI-----------ASGLPIPTEVTNLSPKPNEACAASSLKST 167
              L +ND L N+  +H+             +S   + T++ ++ P P    A ++L S 
Sbjct: 282 EELLMINDNLNNVFLRHERFERFRTGQTAKASSEAELATDLIDMGPDP---AATNNLSSQ 338

Query: 168 DAG 170
            AG
Sbjct: 339 LAG 341


>sp|Q9NZ52|GGA3_HUMAN ADP-ribosylation factor-binding protein GGA3 OS=Homo sapiens
           GN=GGA3 PE=1 SV=1
          Length = 723

 Score = 37.7 bits (86), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 7/118 (5%)

Query: 42  SRRLDETMATEVE------TLSFSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLV 95
           + +L ++M  E E      T    +L+ + + + LLS+ML   +  D      E++ +L 
Sbjct: 193 ANKLIKSMVKEDEARIQKVTKRLHTLEEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELF 252

Query: 96  SRCRSNQKKLMQMLTTTGD-EELLGRGLELNDILQNLLAKHDAIASGLPIPTEVTNLS 152
            +C + ++ L ++ + T D +  LG  L+ +D L  ++  +  I  G  I  EV  L+
Sbjct: 253 DQCENKRRTLFKLASETEDNDNSLGDILQASDNLSRVINSYKTIIEGQVINGEVATLT 310


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.308    0.125    0.361 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 196,557,267
Number of Sequences: 539616
Number of extensions: 9308296
Number of successful extensions: 45266
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 1847
Number of HSP's that attempted gapping in prelim test: 36514
Number of HSP's gapped (non-prelim): 7231
length of query: 479
length of database: 191,569,459
effective HSP length: 121
effective length of query: 358
effective length of database: 126,275,923
effective search space: 45206780434
effective search space used: 45206780434
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 63 (28.9 bits)