Query 011697
Match_columns 479
No_of_seqs 172 out of 307
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 13:29:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011697.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011697hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wrd_A TOM1, target of MYB pro 99.9 5E-28 1.7E-32 207.1 11.5 97 44-144 2-98 (103)
2 1wr6_A ADP-ribosylation factor 99.9 2.7E-26 9.4E-31 199.3 5.9 91 58-148 7-98 (111)
3 1o3x_A ADP-ribosylation factor 99.9 1.1E-24 3.8E-29 195.7 13.1 94 52-145 42-139 (140)
4 1naf_A ADP-ribosylation factor 99.9 8.8E-25 3E-29 200.1 11.2 91 58-148 59-151 (158)
5 1oxz_A ADP-ribosylation factor 99.9 1.9E-24 6.6E-29 202.2 11.0 91 58-148 75-167 (186)
6 2pjw_H Uncharacterized protein 97.4 0.00034 1.2E-08 58.9 6.7 76 64-141 8-85 (88)
7 2pjw_V Vacuolar protein sortin 96.8 0.008 2.8E-07 50.8 9.5 73 67-141 10-83 (91)
8 3f1i_H Hepatocyte growth facto 88.3 1.1 3.8E-05 38.5 6.6 74 61-136 6-79 (98)
9 3f1i_S STAM-1, signal transduc 61.9 47 0.0016 27.4 8.6 72 66-140 5-76 (77)
10 2dnx_A Syntaxin-12; snare, HAB 60.7 71 0.0024 27.6 10.2 80 59-140 21-112 (130)
11 2lig_A Aspartate receptor; che 60.2 51 0.0017 26.4 8.7 17 87-103 92-108 (164)
12 1i5n_A Chemotaxis protein CHEA 59.8 70 0.0024 27.8 10.1 73 61-136 13-106 (146)
13 1x4t_A Hypothetical protein LO 56.0 7.7 0.00026 33.0 3.1 39 96-134 24-67 (92)
14 1s94_A S-syntaxin; three helix 54.4 1.1E+02 0.0036 27.3 10.6 88 52-140 44-147 (180)
15 2asr_A Aspartate receptor; che 53.7 50 0.0017 26.9 7.7 78 61-138 53-134 (142)
16 3iot_A Maltose-binding protein 53.2 2.8 9.6E-05 41.4 0.0 8 93-100 131-138 (449)
17 3kyj_A CHEA3, putative histidi 52.1 1.1E+02 0.0036 26.9 10.0 74 61-137 17-111 (144)
18 1tqg_A Chemotaxis protein CHEA 50.3 61 0.0021 26.0 7.6 72 61-135 11-103 (105)
19 3myf_A Sensor protein; HPT, hi 50.1 26 0.00087 29.7 5.5 78 61-140 12-114 (119)
20 2lp4_A Chemotaxis protein CHEA 46.6 1.3E+02 0.0046 27.7 10.3 73 61-136 13-106 (225)
21 2xv9_A ABA-1A1 repeat UNIT; li 45.3 95 0.0033 27.7 8.6 85 44-140 20-107 (134)
22 3iqt_A Signal transduction his 44.1 27 0.00094 29.9 4.8 23 116-138 99-121 (123)
23 1vls_A TAR, aspartate receptor 42.4 1.1E+02 0.0038 24.9 8.1 19 89-107 54-72 (146)
24 1hs7_A Syntaxin VAM3; UP-and-D 42.4 1.3E+02 0.0045 25.4 8.6 80 61-142 12-94 (97)
25 2lch_A Protein OR38; structura 38.0 1.2E+02 0.004 24.8 7.6 72 61-135 12-104 (113)
26 1fio_A SSO1 protein; four heli 37.9 2.1E+02 0.0072 25.2 12.0 81 58-138 15-103 (196)
27 3ay5_A Cyclin-D1-binding prote 37.3 3.2E+02 0.011 27.5 12.0 69 65-137 252-324 (360)
28 2d4u_A Methyl-accepting chemot 34.3 1.8E+02 0.0061 24.1 8.3 13 126-138 141-153 (176)
29 1m1j_C Fibrinogen gamma chain; 33.9 1.7E+02 0.0057 30.4 9.5 62 48-112 38-100 (409)
30 3dyj_A Talin-1; helix bundles, 33.8 1.2E+02 0.004 30.9 8.1 75 61-135 120-199 (332)
31 3lay_A Zinc resistance-associa 33.7 88 0.003 28.8 6.7 14 43-56 66-79 (175)
32 1x5b_A Signal transducing adap 33.7 1.5E+02 0.005 26.5 8.0 76 64-140 50-145 (163)
33 2dal_A Protein KIAA0794; FAS a 33.3 53 0.0018 25.1 4.4 36 101-136 15-52 (62)
34 3d36_A Sporulation kinase B; G 32.4 55 0.0019 28.3 5.0 83 59-143 23-105 (244)
35 2ld6_A Chemotaxis protein CHEA 31.8 1.2E+02 0.0042 26.0 7.0 74 61-137 10-104 (139)
36 1o5h_A Formiminotetrahydrofola 30.5 75 0.0026 30.2 5.8 41 71-111 50-91 (214)
37 2dam_A ETEA protein; KIAA0887, 29.2 76 0.0026 24.8 4.7 35 104-138 21-58 (67)
38 1xou_B Z5138 gene product; coi 28.9 45 0.0016 27.8 3.5 19 58-76 28-46 (95)
39 2iub_A CORA, divalent cation t 28.6 3E+02 0.01 27.0 10.0 86 49-137 219-308 (363)
40 2p22_C Protein SRN2; endosome, 28.0 88 0.003 29.2 5.8 78 53-135 35-113 (192)
41 2c2a_A Sensor histidine kinase 27.8 65 0.0022 28.6 4.7 79 60-142 34-116 (258)
42 3f4m_A Tumor necrosis factor, 25.6 3.7E+02 0.013 24.7 9.3 74 62-135 35-111 (161)
43 3mud_A DNA repair protein XRCC 25.1 1E+02 0.0035 28.8 5.5 49 86-134 121-171 (175)
44 1avo_B 11S regulator; proteaso 24.4 2.8E+02 0.0095 24.7 8.1 42 91-132 19-69 (140)
45 3hiu_A Uncharacterized protein 24.1 2E+02 0.0067 26.2 7.2 65 59-137 44-108 (166)
46 2yfa_A MCPS, methyl-accepting 24.0 2.5E+02 0.0087 25.1 8.0 52 61-112 50-102 (258)
47 4e17_B Catenin alpha-1; four h 23.9 65 0.0022 23.7 3.1 24 89-112 12-35 (40)
48 3ogh_B Protein YCIE; iron-bind 23.3 1.8E+02 0.0063 26.6 6.9 67 58-138 46-112 (171)
49 1jqn_A Pepcase, PEPC, phosphoe 23.1 1.7E+02 0.0059 33.2 7.9 78 64-141 8-94 (883)
50 3nuf_A PRD-containing transcri 21.9 31 0.0011 30.5 1.4 46 71-116 58-104 (119)
51 2hy6_A General control protein 21.5 1.2E+02 0.0042 21.5 4.0 27 115-141 7-33 (34)
52 4ev6_A Magnesium transport pro 21.5 4.4E+02 0.015 25.5 9.6 79 58-138 203-285 (339)
53 3o3m_B Beta subunit 2-hydroxya 21.3 6.1E+02 0.021 25.1 10.8 58 88-145 130-187 (385)
54 2l7a_A Talin-1; vinculin, bund 20.8 2.4E+02 0.0081 25.0 6.8 73 61-133 43-122 (131)
55 3fyq_A CG6831-PA (talin); 5-he 20.3 1.9E+02 0.0064 27.6 6.4 73 61-133 111-188 (199)
No 1
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=99.95 E-value=5e-28 Score=207.10 Aligned_cols=97 Identities=22% Similarity=0.367 Sum_probs=91.9
Q ss_pred CCChhHHHhhhhhcHHHHHHHHHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHH
Q 011697 44 RLDETMATEVETLSFSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLE 123 (479)
Q Consensus 44 ~l~peq~sklekLS~sELevVrnNVkVLsEML~e~~Pg~~e~~d~ELlqEL~eqCRsmQ~RI~~LIs~t~DEElL~ELL~ 123 (479)
++++++++|+ ++||++|++|++||+|||++++|+++++.++|+|+|||++||+||+|||+||++++||++|+++|+
T Consensus 2 ~~~~eq~~k~----~~el~~v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~qp~i~~li~~~~dee~l~~lL~ 77 (103)
T 1wrd_A 2 PLGSEQIGKL----RSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQIANEQLTEELLI 77 (103)
T ss_dssp CSSSTTHHHH----HHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred CCCHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 4678888888 999999999999999999999999999999999999999999999999999998888889999999
Q ss_pred hhhHHHHHHHHHHHHhhCCCC
Q 011697 124 LNDILQNLLAKHDAIASGLPI 144 (479)
Q Consensus 124 lNDdLNnVL~RYdr~~kG~~~ 144 (479)
+||+||+||.||++|++|+..
T Consensus 78 ~ND~L~~vl~ry~~~~~~~~~ 98 (103)
T 1wrd_A 78 VNDNLNNVFLRHERFERFRTG 98 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999988754
No 2
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G
Probab=99.92 E-value=2.7e-26 Score=199.26 Aligned_cols=91 Identities=25% Similarity=0.446 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhhcCC-hHHHHHHHHhhhHHHHHHHHHH
Q 011697 58 FSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGD-EELLGRGLELNDILQNLLAKHD 136 (479)
Q Consensus 58 ~sELevVrnNVkVLsEML~e~~Pg~~e~~d~ELlqEL~eqCRsmQ~RI~~LIs~t~D-EElL~ELL~lNDdLNnVL~RYd 136 (479)
++||++|++|++||+|||++++|++....+.|||+|||++||+||+||++||+++.| |++|+++|++||+||+||.||+
T Consensus 7 ~~eLe~V~~n~~LL~EML~~~~pg~~~~~d~ell~ELy~~ck~~qp~i~kL~~e~~ddde~l~elL~~ND~ln~vi~rY~ 86 (111)
T 1wr6_A 7 LHTLEEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELFDQCENKRRTLFKLASETEDNDNSLGDILQASDNLSRVINSYK 86 (111)
T ss_dssp CCCHHHHHHHHHHHHHHTTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCSSHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhHHHHHHHHHHH
Confidence 589999999999999999999999998899999999999999999999999999875 5599999999999999999999
Q ss_pred HHhhCCCCCCcc
Q 011697 137 AIASGLPIPTEV 148 (479)
Q Consensus 137 r~~kG~~~~~e~ 148 (479)
+|++|+.+.++.
T Consensus 87 ~~~~g~~~~~~~ 98 (111)
T 1wr6_A 87 TIIEGQVINGEV 98 (111)
T ss_dssp HTTTCC------
T ss_pred HHhcCCCCCCcc
Confidence 999999988764
No 3
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=99.92 E-value=1.1e-24 Score=195.74 Aligned_cols=94 Identities=20% Similarity=0.405 Sum_probs=85.0
Q ss_pred hhhhhc--HHHHHHHHHHHHHHHHHHHhhCCCCccch-hhHHHHHHHHHHHHHHHHHHHHhhhcCC-hHHHHHHHHhhhH
Q 011697 52 EVETLS--FSSLDSMRDVMELLSDMLQAVNPSDREAV-KDEVIVDLVSRCRSNQKKLMQMLTTTGD-EELLGRGLELNDI 127 (479)
Q Consensus 52 klekLS--~sELevVrnNVkVLsEML~e~~Pg~~e~~-d~ELlqEL~eqCRsmQ~RI~~LIs~t~D-EElL~ELL~lNDd 127 (479)
+.++++ ++||++|++|++||+|||++++|++.... ++|||+|||++||+||+||++||++++| |++|+++|++||+
T Consensus 42 r~e~~~k~~~eLe~v~~n~~LL~EML~~~~p~~~~~~~d~Ell~eL~~~ck~~qp~i~~li~e~~ddee~l~elL~~ND~ 121 (140)
T 1o3x_A 42 RMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDN 121 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhhHH
Confidence 344444 48999999999999999999999999888 9999999999999999999999998865 5599999999999
Q ss_pred HHHHHHHHHHHhhCCCCC
Q 011697 128 LQNLLAKHDAIASGLPIP 145 (479)
Q Consensus 128 LNnVL~RYdr~~kG~~~~ 145 (479)
||+||.||++|++|..+.
T Consensus 122 ln~vl~kY~~~~~g~~~~ 139 (140)
T 1o3x_A 122 LTQVINLYKQLVRGEEVN 139 (140)
T ss_dssp HHHHHHHHHHHHHTCCC-
T ss_pred HHHHHHHHHHHhcCCCCC
Confidence 999999999999998764
No 4
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=99.91 E-value=8.8e-25 Score=200.09 Aligned_cols=91 Identities=19% Similarity=0.386 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCccch-hhHHHHHHHHHHHHHHHHHHHHhhhcCC-hHHHHHHHHhhhHHHHHHHHH
Q 011697 58 FSSLDSMRDVMELLSDMLQAVNPSDREAV-KDEVIVDLVSRCRSNQKKLMQMLTTTGD-EELLGRGLELNDILQNLLAKH 135 (479)
Q Consensus 58 ~sELevVrnNVkVLsEML~e~~Pg~~e~~-d~ELlqEL~eqCRsmQ~RI~~LIs~t~D-EElL~ELL~lNDdLNnVL~RY 135 (479)
++||++|++|++||+|||++++|++.... ++|||+|||++||+||+||++||++++| |++|+++|++||+||+||.||
T Consensus 59 ~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e~~ddee~L~elL~~ND~Ln~vl~kY 138 (158)
T 1naf_A 59 VNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLY 138 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhhHHHHHHHHHH
Confidence 48999999999999999999999999887 9999999999999999999999998865 559999999999999999999
Q ss_pred HHHhhCCCCCCcc
Q 011697 136 DAIASGLPIPTEV 148 (479)
Q Consensus 136 dr~~kG~~~~~e~ 148 (479)
++|++|+.+.++.
T Consensus 139 ~~~~~g~~~~~~~ 151 (158)
T 1naf_A 139 KQLVRGEEVNGDA 151 (158)
T ss_dssp HHHHC--------
T ss_pred HHHhcCCCCCCcc
Confidence 9999999987664
No 5
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=99.91 E-value=1.9e-24 Score=202.18 Aligned_cols=91 Identities=19% Similarity=0.386 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCccch-hhHHHHHHHHHHHHHHHHHHHHhhhcCC-hHHHHHHHHhhhHHHHHHHHH
Q 011697 58 FSSLDSMRDVMELLSDMLQAVNPSDREAV-KDEVIVDLVSRCRSNQKKLMQMLTTTGD-EELLGRGLELNDILQNLLAKH 135 (479)
Q Consensus 58 ~sELevVrnNVkVLsEML~e~~Pg~~e~~-d~ELlqEL~eqCRsmQ~RI~~LIs~t~D-EElL~ELL~lNDdLNnVL~RY 135 (479)
++||++||+||+||+|||++++|++.... ++|||+|||++||+||+||++||++++| |++|+++|++||+||+||.||
T Consensus 75 ~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e~~ddee~L~elL~~ND~Ln~vl~kY 154 (186)
T 1oxz_A 75 VNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLY 154 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhhHHHHHHHHHH
Confidence 38999999999999999999999999888 9999999999999999999999998865 559999999999999999999
Q ss_pred HHHhhCCCCCCcc
Q 011697 136 DAIASGLPIPTEV 148 (479)
Q Consensus 136 dr~~kG~~~~~e~ 148 (479)
++|++|+.+.++.
T Consensus 155 ~~~~~g~~~~~~~ 167 (186)
T 1oxz_A 155 KQLVRGEEVNGDA 167 (186)
T ss_dssp TTHHHHCC-----
T ss_pred HHHhcCCCCCccc
Confidence 9999999988775
No 6
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.00034 Score=58.92 Aligned_cols=76 Identities=18% Similarity=0.261 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHhhCCCC-c-cchhhHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHhhhHHHHHHHHHHHHhhC
Q 011697 64 MRDVMELLSDMLQAVNPSD-R-EAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDAIASG 141 (479)
Q Consensus 64 VrnNVkVLsEML~e~~Pg~-~-e~~d~ELlqEL~eqCRsmQ~RI~~LIs~t~DEElL~ELL~lNDdLNnVL~RYdr~~kG 141 (479)
-..||+.|-++|...+|.. - +..+++=|++||..|=.+|++|.+||+....... +++.+|+.|.++..-|+++...
T Consensus 8 q~~~vd~Ll~~L~~~~p~~~~~~~~~d~eiq~LY~~v~~lRPkL~~li~kysqKk~--eL~~Ln~kl~~a~~~Yd~lle~ 85 (88)
T 2pjw_H 8 QKTTIDQLHNSLNAASKTGNSNEVLQDPHIGDMYGSVTPLRPQVTRMLGKYAKEKE--DMLSLRQVLANAERSYNQLMDR 85 (88)
T ss_dssp THHHHHHHHHHHHHHHTTCCTHHHHSCHHHHHHHHHHTTHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHhhHHHHHHHHhcCCCCCchhhhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999998733 2 6678899999999999999999999998765542 6789999999999999999754
No 7
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.008 Score=50.82 Aligned_cols=73 Identities=12% Similarity=0.254 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhhCC-CCccchhhHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHhhhHHHHHHHHHHHHhhC
Q 011697 67 VMELLSDMLQAVNP-SDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDAIASG 141 (479)
Q Consensus 67 NVkVLsEML~e~~P-g~~e~~d~ELlqEL~eqCRsmQ~RI~~LIs~t~DEElL~ELL~lNDdLNnVL~RYdr~~kG 141 (479)
|+-+++..+..++- +..+..+++=|++||.+|-.+|+||.+.|++....- .+++.+||.|..+..-||+|...
T Consensus 10 ~I~lF~~lv~~~k~~~~~~i~~d~~LqeLy~kv~~lRPKL~r~l~~~~~K~--~~L~~mn~Kls~a~rlYD~lLE~ 83 (91)
T 2pjw_V 10 SIYMFASLVEKMKSRPLNEILEDSKLQNLAQRVFASKARLNYALNDKAQKY--NTLIEMNGKISEIMNIYDRLLEQ 83 (91)
T ss_dssp HHHHHHHHHHHHHTCSCSTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccccCCHHHHHHHHHHHhHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554431 244456789999999999999999999999765443 35799999999999999999753
No 8
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=88.28 E-value=1.1 Score=38.49 Aligned_cols=74 Identities=15% Similarity=0.327 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHhhhHHHHHHHHHH
Q 011697 61 LDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHD 136 (479)
Q Consensus 61 LevVrnNVkVLsEML~e~~Pg~~e~~d~ELlqEL~eqCRsmQ~RI~~LIs~t~DEElL~ELL~lNDdLNnVL~RYd 136 (479)
|...+..|++|-+=+....-.......|.-++.|..+.-.|+++|++.|.+.+|.-.-.|. |.|.|..|=+--.
T Consensus 6 ~~~l~~sv~if~NRmksn~~RGrsi~nDssVQsLF~~lt~MH~~Ll~~i~~~ee~R~~yE~--LQDkL~qi~eAR~ 79 (98)
T 3f1i_H 6 LKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSINGMHPQLLELLNQLDERRLYYEG--LQDKLAQIRDARG 79 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 6778888998877666654445667788999999999999999999999987665555554 4577777654433
No 9
>3f1i_S STAM-1, signal transducing adapter molecule 1; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=61.93 E-value=47 Score=27.37 Aligned_cols=72 Identities=22% Similarity=0.238 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHhhhHHHHHHHHHHHHhh
Q 011697 66 DVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDAIAS 140 (479)
Q Consensus 66 nNVkVLsEML~e~~Pg~~e~~d~ELlqEL~eqCRsmQ~RI~~LIs~t~DEElL~ELL~lNDdLNnVL~RYdr~~k 140 (479)
..|+-+-.||.+.+|.+..++- .=|.+|=..|.+|-+-|=.-++++.- --.++=++|-.|-.+|.-|..++.
T Consensus 5 ~kmd~~L~~l~~aDP~~~~~D~-~el~~LE~~c~~MgplId~kLE~iDr--kh~~Lteln~~~leaL~lY~~lM~ 76 (77)
T 3f1i_S 5 DKMDQLLQMLQSTDPSDDQPDL-PELLHLEAMCHQMGPLIDEKLEDIDR--KHSELSELNVKVMEALSLYTKLMN 76 (77)
T ss_dssp HHHHHHHHHHHTCCTTSCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567777899999997775444 44678999999998887555555432 233456789899999999998874
No 10
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.71 E-value=71 Score=27.61 Aligned_cols=80 Identities=10% Similarity=0.157 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCccch--hhHHHHHHHHHHHHHHHHHHHHhhhc--------CChH--HHHHHHHhhh
Q 011697 59 SSLDSMRDVMELLSDMLQAVNPSDREAV--KDEVIVDLVSRCRSNQKKLMQMLTTT--------GDEE--LLGRGLELND 126 (479)
Q Consensus 59 sELevVrnNVkVLsEML~e~~Pg~~e~~--d~ELlqEL~eqCRsmQ~RI~~LIs~t--------~DEE--lL~ELL~lND 126 (479)
.-|..+.+||.=|.-||..+ |...+. =.|=|.++.+.|.++-..+-+.|.++ .+++ --.+.-.|-.
T Consensus 21 ~~I~~In~~vs~l~r~v~~L--GT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~~~~~r~~k~q~~KL~~ 98 (130)
T 2dnx_A 21 GNIQRISQATAQIKNLMSQL--GTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQRLQKERLMN 98 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHH
Confidence 56999999999999999999 333211 11223333333433333333333221 1121 2223556678
Q ss_pred HHHHHHHHHHHHhh
Q 011697 127 ILQNLLAKHDAIAS 140 (479)
Q Consensus 127 dLNnVL~RYdr~~k 140 (479)
|++.+|.+|.++-+
T Consensus 99 dF~~~L~~FQ~~Qr 112 (130)
T 2dnx_A 99 DFSAALNNFQAVQR 112 (130)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88889999988743
No 11
>2lig_A Aspartate receptor; chemotaxis; HET: PHN; 2.00A {Salmonella typhimurium} SCOP: a.24.2.1 PDB: 1lih_A*
Probab=60.23 E-value=51 Score=26.37 Aligned_cols=17 Identities=12% Similarity=0.120 Sum_probs=7.4
Q ss_pred hhHHHHHHHHHHHHHHH
Q 011697 87 KDEVIVDLVSRCRSNQK 103 (479)
Q Consensus 87 d~ELlqEL~eqCRsmQ~ 103 (479)
+.+++.+|......+..
T Consensus 92 ~~~l~~~~~~~~~~y~~ 108 (164)
T 2lig_A 92 MAEASANVDEKYQRYQA 108 (164)
T ss_dssp GHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 12
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=59.75 E-value=70 Score=27.79 Aligned_cols=73 Identities=15% Similarity=0.190 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCccchhhHHHHHHHHH-------------------HHHHHHHHHHHhhh--cCChHHHH
Q 011697 61 LDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSR-------------------CRSNQKKLMQMLTT--TGDEELLG 119 (479)
Q Consensus 61 LevVrnNVkVLsEML~e~~Pg~~e~~d~ELlqEL~eq-------------------CRsmQ~RI~~LIs~--t~DEElL~ 119 (479)
|+.++..++.|.+.|-.+..+ ..+.+.+.+|.+. |+.+...+-.+-.. ..+.+++.
T Consensus 13 l~Ea~e~L~~le~~L~~le~~---~~d~~~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~~~r~g~~~~~~~l~~ 89 (146)
T 1i5n_A 13 FDEADELLADMEQHLLDLVPE---SPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNTDIIN 89 (146)
T ss_dssp HHHHHHHHHHHHHHHHHCCTT---SCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhC---cCcHHHHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 788888999999999888532 2345666665554 44443333333222 13456888
Q ss_pred HHHHhhhHHHHHHHHHH
Q 011697 120 RGLELNDILQNLLAKHD 136 (479)
Q Consensus 120 ELL~lNDdLNnVL~RYd 136 (479)
.+|+.-|.|...+..++
T Consensus 90 ~l~~~~D~l~~~l~~~~ 106 (146)
T 1i5n_A 90 LFLETKDIMQEQLDAYK 106 (146)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 89999999999887664
No 13
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=56.03 E-value=7.7 Score=33.00 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHh----hhcCChHH-HHHHHHhhhHHHHHHHH
Q 011697 96 SRCRSNQKKLMQML----TTTGDEEL-LGRGLELNDILQNLLAK 134 (479)
Q Consensus 96 eqCRsmQ~RI~~LI----s~t~DEEl-L~ELL~lNDdLNnVL~R 134 (479)
..|+..+..|++=| .++.|.-+ =.++=.|||+||++|..
T Consensus 24 ~~AekWR~qvikEIs~Kv~~Iqn~~L~E~~IRdLNDEINkL~rE 67 (92)
T 1x4t_A 24 PKAEKWRRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLRE 67 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Confidence 34666665555533 33334331 23667899999999964
No 14
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=54.39 E-value=1.1e+02 Score=27.26 Aligned_cols=88 Identities=10% Similarity=0.158 Sum_probs=50.6
Q ss_pred hhhhhcHHHHHHHHHHHHHHHHHHHhhC--CCCccc--hhh-HHHHHHHHHHHHHHHHHHHHhhhc---------CChH-
Q 011697 52 EVETLSFSSLDSMRDVMELLSDMLQAVN--PSDREA--VKD-EVIVDLVSRCRSNQKKLMQMLTTT---------GDEE- 116 (479)
Q Consensus 52 klekLS~sELevVrnNVkVLsEML~e~~--Pg~~e~--~d~-ELlqEL~eqCRsmQ~RI~~LIs~t---------~DEE- 116 (479)
+++.+ +.+|+.++.+++-|..+-..+- +..... .+. .++.+....++..+.+|..|-... ..+.
T Consensus 44 ~v~~I-~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~R 122 (180)
T 1s94_A 44 QVEEI-RAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSADLR 122 (180)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHHH
Confidence 33444 6778888888888877744421 111111 122 355566666666666666655332 1111
Q ss_pred -HHHHHHHhhhHHHHHHHHHHHHhh
Q 011697 117 -LLGRGLELNDILQNLLAKHDAIAS 140 (479)
Q Consensus 117 -lL~ELL~lNDdLNnVL~RYdr~~k 140 (479)
--.+.-.|-..|..++..|..+..
T Consensus 123 ir~~q~~~L~~kf~~~m~~yq~~q~ 147 (180)
T 1s94_A 123 IRKTQYSTISRKFVEVMSDYNTTQI 147 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233566778899999999998854
No 15
>2asr_A Aspartate receptor; chemotaxis; 2.30A {Escherichia coli} SCOP: a.24.2.1
Probab=53.73 E-value=50 Score=26.90 Aligned_cols=78 Identities=8% Similarity=0.071 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhhcCChH---HHH-HHHHhhhHHHHHHHHHH
Q 011697 61 LDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEE---LLG-RGLELNDILQNLLAKHD 136 (479)
Q Consensus 61 LevVrnNVkVLsEML~e~~Pg~~e~~d~ELlqEL~eqCRsmQ~RI~~LIs~t~DEE---lL~-ELL~lNDdLNnVL~RYd 136 (479)
|+.++..++-..+.+..+.-....+.+.+|..+|...-..+..-|..|+.-+...+ .+. ..-.+.+.+..++.+|.
T Consensus 53 l~~a~~~l~~a~~~~~~y~~~~~~~~~~~l~~~l~~~y~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 132 (142)
T 2asr_A 53 LDSARKTLAQAATHYKKFKSMAPLPEMVATSRNIDEKYKNYYTALTELIDYLDYGNTGAYFAQPTQGMQNAMGERFAQYA 132 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 55555555555555555532112334556666666665555555555665443322 111 12233455555555555
Q ss_pred HH
Q 011697 137 AI 138 (479)
Q Consensus 137 r~ 138 (479)
.+
T Consensus 133 ~~ 134 (142)
T 2asr_A 133 LS 134 (142)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 16
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=53.21 E-value=2.8 Score=41.40 Aligned_cols=8 Identities=0% Similarity=0.098 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 011697 93 DLVSRCRS 100 (479)
Q Consensus 93 EL~eqCRs 100 (479)
||.+.|++
T Consensus 131 el~~~a~~ 138 (449)
T 3iot_A 131 EIPALDKE 138 (449)
T ss_dssp GHHHHHHH
T ss_pred HHHHHHHH
Confidence 33344443
No 17
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=52.06 E-value=1.1e+02 Score=26.92 Aligned_cols=74 Identities=15% Similarity=0.135 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHHHH-------------------HHHHHHHHhhh--cCChHHHH
Q 011697 61 LDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRS-------------------NQKKLMQMLTT--TGDEELLG 119 (479)
Q Consensus 61 LevVrnNVkVLsEML~e~~Pg~~e~~d~ELlqEL~eqCRs-------------------mQ~RI~~LIs~--t~DEElL~ 119 (479)
|+.++..++.|.+.|-.+..+ ..+.+++.+|++..+. +..-+-++-.. .-+.+++.
T Consensus 17 leEa~E~L~~le~~Ll~le~~---~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll~~lr~g~~~~~~~l~d 93 (144)
T 3kyj_A 17 ADDGAQALDAMEASLLALQAG---EDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLIGLVRDAGVPMDGEIVE 93 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHSCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 888899999999999888432 2456777766655444 44333333331 23566888
Q ss_pred HHHHhhhHHHHHHHHHHH
Q 011697 120 RGLELNDILQNLLAKHDA 137 (479)
Q Consensus 120 ELL~lNDdLNnVL~RYdr 137 (479)
-+|+.-|.|...+..++.
T Consensus 94 lll~~~D~l~~lv~~~~~ 111 (144)
T 3kyj_A 94 ILLFASDTLRAMLEETAA 111 (144)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 889999999988887764
No 18
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=50.35 E-value=61 Score=26.03 Aligned_cols=72 Identities=17% Similarity=0.278 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCccchhhHHHHH-------------------HHHHHHHHHHHHHHHhh-h-cCChHHHH
Q 011697 61 LDSMRDVMELLSDMLQAVNPSDREAVKDEVIVD-------------------LVSRCRSNQKKLMQMLT-T-TGDEELLG 119 (479)
Q Consensus 61 LevVrnNVkVLsEML~e~~Pg~~e~~d~ELlqE-------------------L~eqCRsmQ~RI~~LIs-~-t~DEElL~ 119 (479)
++.++..+..|.+.|..+.-+ ..+.+.+.+ |.+-|+.+...+-.+-. . ..+.+++.
T Consensus 11 ~~e~~e~l~~l~~~l~~le~~---~~~~~~~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l~~~r~~~~~~~~~~~~ 87 (105)
T 1tqg_A 11 VDETKEYLQNLNDTLLELEKN---PEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKITSDLLD 87 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 666777777777777766321 123344444 44555555544333333 1 23456888
Q ss_pred HHHHhhhHHHHHHHHH
Q 011697 120 RGLELNDILQNLLAKH 135 (479)
Q Consensus 120 ELL~lNDdLNnVL~RY 135 (479)
.++..-|.|...+..+
T Consensus 88 ~l~~~~d~l~~~l~~~ 103 (105)
T 1tqg_A 88 KIFAGVDMITRMVDKI 103 (105)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8999999998888654
No 19
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=50.07 E-value=26 Score=29.71 Aligned_cols=78 Identities=21% Similarity=0.149 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCccchhhHHHH---------HHHHHHHHHH--------HHHHHHhhhcC--------Ch
Q 011697 61 LDSMRDVMELLSDMLQAVNPSDREAVKDEVIV---------DLVSRCRSNQ--------KKLMQMLTTTG--------DE 115 (479)
Q Consensus 61 LevVrnNVkVLsEML~e~~Pg~~e~~d~ELlq---------EL~eqCRsmQ--------~RI~~LIs~t~--------DE 115 (479)
|..+.||-+++.|||..+- +....+.+.|. +|.+.+++++ ++|..++..++ .+
T Consensus 12 l~~~~g~~~L~~~lL~~fl--~~~~~~~~~l~~a~~~~d~~~l~~~aHkLkGaa~~~Ga~~L~~~~~~LE~~~r~~~~~~ 89 (119)
T 3myf_A 12 LTQANHKSNLALEMLKMLL--DSLPETVEKIQTALGQNDQATMLSTIHKLHGASCYCGVPTTQRLCQEIESALKRQTPVE 89 (119)
T ss_dssp HHHTTTCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHhCCCHHHHHHHHHHHH--HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCCHH
Confidence 5556667777777776663 11112222222 3444444444 45555444332 23
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhh
Q 011697 116 ELLGRGLELNDILQNLLAKHDAIAS 140 (479)
Q Consensus 116 ElL~ELL~lNDdLNnVL~RYdr~~k 140 (479)
++-.++.++-|+|.+|..--+.+.+
T Consensus 90 ~l~~~~~~L~~ei~~v~~~~~~~l~ 114 (119)
T 3myf_A 90 DLEPEILELLDELTKVESAVKQVLS 114 (119)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777766666543
No 20
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=46.63 E-value=1.3e+02 Score=27.67 Aligned_cols=73 Identities=16% Similarity=0.211 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHHHHHH-------------------HHHHHHhhh--cCChHHHH
Q 011697 61 LDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQ-------------------KKLMQMLTT--TGDEELLG 119 (479)
Q Consensus 61 LevVrnNVkVLsEML~e~~Pg~~e~~d~ELlqEL~eqCRsmQ-------------------~RI~~LIs~--t~DEElL~ 119 (479)
|+.++..+..|.+.|-.+..+ ..+.+++.+|++..+.++ .-+-++-.. .-+.+++.
T Consensus 13 ~~Ea~e~L~~l~~~Ll~le~~---~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~laH~~E~~l~~~r~g~~~~~~~~~~ 89 (225)
T 2lp4_A 13 FDEADELLADMEQHLLDLVPE---SPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNTDIIN 89 (225)
T ss_dssp HHHHHHHHHHHHHHHHHCCTT---SCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 888999999999999998532 345677777666554444 333333321 23567888
Q ss_pred HHHHhhhHHHHHHHHHH
Q 011697 120 RGLELNDILQNLLAKHD 136 (479)
Q Consensus 120 ELL~lNDdLNnVL~RYd 136 (479)
-+|+.-|.|...+..+.
T Consensus 90 ll~~~~D~l~~~l~~~~ 106 (225)
T 2lp4_A 90 LFLETKDIMQEQLDAYK 106 (225)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89999999999887664
No 21
>2xv9_A ABA-1A1 repeat UNIT; lipid binding protein, fatty acid binding, retinol binding,; NMR {Ascaris suum}
Probab=45.34 E-value=95 Score=27.72 Aligned_cols=85 Identities=21% Similarity=0.211 Sum_probs=53.5
Q ss_pred CCChhHHHhhhhhcHHHHHHHHHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHH
Q 011697 44 RLDETMATEVETLSFSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLE 123 (479)
Q Consensus 44 ~l~peq~sklekLS~sELevVrnNVkVLsEML~e~~Pg~~e~~d~ELlqEL~eqCRsmQ~RI~~LIs~t~DEElL~ELL~ 123 (479)
=|+++|-.+|.++ +.+ =.+..+|+.-++..+.--.. ..+.+.-.+|..-||.+-..|+ -+|-+.+|=.
T Consensus 20 WLt~eQk~EI~kM-k~~---gksk~~v~~KI~efye~l~g-d~K~~a~e~L~~~C~~~lk~ii-------G~e~~~eLk~ 87 (134)
T 2xv9_A 20 WLSQEQKDELLKM-KKD---GKAKKELEAKILHYYDELEG-DAKKEATEHLKGGCREILKHVV-------GEEKAAELKN 87 (134)
T ss_dssp TSCHHHHHHHHHH-HHT---TCCHHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHHHHHHHHT-------HHHHHHHHHH
T ss_pred HCCHHHHHHHHHH-HHc---CCCHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHHHHHHh-------hHhHHHHHHH
Confidence 5678875555444 111 11467788888887753222 4567788899999996544443 3444444555
Q ss_pred hhh---HHHHHHHHHHHHhh
Q 011697 124 LND---ILQNLLAKHDAIAS 140 (479)
Q Consensus 124 lND---dLNnVL~RYdr~~k 140 (479)
+.| +...+..+|+.|..
T Consensus 88 m~~sg~~~e~l~~Kv~e~i~ 107 (134)
T 2xv9_A 88 LKDSGASKEELKAKVEEALH 107 (134)
T ss_dssp HHHHTCCHHHHHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHHHHHH
Confidence 555 78888888888864
No 22
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=44.05 E-value=27 Score=29.86 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=17.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHH
Q 011697 116 ELLGRGLELNDILQNLLAKHDAI 138 (479)
Q Consensus 116 ElL~ELL~lNDdLNnVL~RYdr~ 138 (479)
++-.+++++-|+|.+|+.--+++
T Consensus 99 ~l~~~l~~L~del~~v~~~~~~~ 121 (123)
T 3iqt_A 99 DLEPELLELLDEMDNVAREASKI 121 (123)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667888999999988766654
No 23
>1vls_A TAR, aspartate receptor; chemotaxis, bacterial chemotaxis receptor, unbound; 1.85A {Salmonella typhimurium} SCOP: a.24.2.1 PDB: 1vlt_A 1was_A 1wat_A 1jmw_A
Probab=42.43 E-value=1.1e+02 Score=24.90 Aligned_cols=19 Identities=0% Similarity=0.076 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011697 89 EVIVDLVSRCRSNQKKLMQ 107 (479)
Q Consensus 89 ELlqEL~eqCRsmQ~RI~~ 107 (479)
+++...-..++..+..+-+
T Consensus 54 ~~l~~a~~~l~~a~~~~~~ 72 (146)
T 1vls_A 54 DLLQNAKTTLAQAAAHYAN 72 (146)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 24
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=42.41 E-value=1.3e+02 Score=25.38 Aligned_cols=80 Identities=13% Similarity=0.215 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCc---cchhhHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHhhhHHHHHHHHHHH
Q 011697 61 LDSMRDVMELLSDMLQAVNPSDR---EAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDA 137 (479)
Q Consensus 61 LevVrnNVkVLsEML~e~~Pg~~---e~~d~ELlqEL~eqCRsmQ~RI~~LIs~t~DEElL~ELL~lNDdLNnVL~RYdr 137 (479)
|...-.|+..|.-|+..+ |.+ ....+.|-.+|...|..|..+|-+|..-...|-++.++..+=-+++.+-..|..
T Consensus 12 i~t~s~niq~l~k~~~ql--GTkrD~~~LR~~l~~~l~~~~~~L~k~~~~l~~l~qkeRL~~dF~~l~~~fQ~~qr~y~e 89 (97)
T 1hs7_A 12 IETFAEQSRVLEKECTKI--GSKRDSKELRYKIETELIPNCTSVRDKIESNILIHQNGKLSADFKNLKTKYQSLQQSYNQ 89 (97)
T ss_dssp HHHHHHHHHHHHHHHHHT--TSSSCCHHHHHHHHHTHHHHHHHHHHHHHHSTHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777888999999999 433 222333333888999999999986655323444898988888889999888887
Q ss_pred HhhCC
Q 011697 138 IASGL 142 (479)
Q Consensus 138 ~~kG~ 142 (479)
.++..
T Consensus 90 k~~e~ 94 (97)
T 1hs7_A 90 RKSLF 94 (97)
T ss_dssp HHHHS
T ss_pred HHhcc
Confidence 76543
No 25
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=38.00 E-value=1.2e+02 Score=24.84 Aligned_cols=72 Identities=14% Similarity=0.193 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCccchhhHHHHHHHHH-------------------HHHHHHHHHHHhhh--cCChHHHH
Q 011697 61 LDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSR-------------------CRSNQKKLMQMLTT--TGDEELLG 119 (479)
Q Consensus 61 LevVrnNVkVLsEML~e~~Pg~~e~~d~ELlqEL~eq-------------------CRsmQ~RI~~LIs~--t~DEElL~ 119 (479)
++.++..++.|.+.|-.+.- ...+.+.+.+|.+. |+.+...+-.+-.. ..+.+++.
T Consensus 12 ~~Ea~e~l~~l~~~l~~le~---~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~l~~~r~~~~~~~~~l~~ 88 (113)
T 2lch_A 12 TDELKELIQNVNDDIKEVEK---NPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNLVDKMLNSEIKITSDLID 88 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSTTTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 67777888888888877621 11234555555444 44443333333221 13445788
Q ss_pred HHHHhhhHHHHHHHHH
Q 011697 120 RGLELNDILQNLLAKH 135 (479)
Q Consensus 120 ELL~lNDdLNnVL~RY 135 (479)
.+|..-|.|...+..+
T Consensus 89 ~l~~~~d~l~~~l~~~ 104 (113)
T 2lch_A 89 KVKKKLDMVTRELDKK 104 (113)
T ss_dssp HHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888877544
No 26
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=37.94 E-value=2.1e+02 Score=25.21 Aligned_cols=81 Identities=6% Similarity=0.100 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-CCCCccc---hh---hHHHHHHHHHHHHHHHHHHHHhhhcCChH-HHHHHHHhhhHHH
Q 011697 58 FSSLDSMRDVMELLSDMLQAV-NPSDREA---VK---DEVIVDLVSRCRSNQKKLMQMLTTTGDEE-LLGRGLELNDILQ 129 (479)
Q Consensus 58 ~sELevVrnNVkVLsEML~e~-~Pg~~e~---~d---~ELlqEL~eqCRsmQ~RI~~LIs~t~DEE-lL~ELL~lNDdLN 129 (479)
..+|..++.+++-|..+...+ ....... .. ++++.+....|+..+.+|..|-....+.- .-...-.|-.+|+
T Consensus 15 ~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~~~~r~~k~~~~~L~~~f~ 94 (196)
T 1fio_A 15 NRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIHDTNKQAQAENSRQRFL 94 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHH
Confidence 678999999999999998773 2211111 11 12445555556666666666554432221 2223334555666
Q ss_pred HHHHHHHHH
Q 011697 130 NLLAKHDAI 138 (479)
Q Consensus 130 nVL~RYdr~ 138 (479)
.++..|..+
T Consensus 95 ~~~~~fq~~ 103 (196)
T 1fio_A 95 KLIQDYRIV 103 (196)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666544
No 27
>3ay5_A Cyclin-D1-binding protein 1; dominant-negative helix-loop-helix transcriptional regulator cycle; 2.50A {Homo sapiens}
Probab=37.28 E-value=3.2e+02 Score=27.49 Aligned_cols=69 Identities=9% Similarity=0.057 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhhcC---ChH-HHHHHHHhhhHHHHHHHHHHH
Q 011697 65 RDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTG---DEE-LLGRGLELNDILQNLLAKHDA 137 (479)
Q Consensus 65 rnNVkVLsEML~e~~Pg~~e~~d~ELlqEL~eqCRsmQ~RI~~LIs~t~---DEE-lL~ELL~lNDdLNnVL~RYdr 137 (479)
+..++.+..++....+ ....+.|.+|++.|++...+|=+|+..+= |.+ +...+-.+++.+.+++.--+.
T Consensus 252 ~~~lk~i~~~ik~~~~----~~~v~~LD~L~~~~~~i~~~VDeLa~slYPp~d~~~v~~~~~~L~~~~~~~~~~~~~ 324 (360)
T 3ay5_A 252 KACLKKIRMLVAENGK----KDQVAQLDDIVDISDEISPSVDDLALSIYPPMSHLTVRINSAKLVSVLKKALEITKA 324 (360)
T ss_dssp HHHHHHHHHHHHHHCC----TTCHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCc----hhHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444554433 23347899999999999999999998763 333 666777777777777766554
No 28
>2d4u_A Methyl-accepting chemotaxis protein I; helix-turn-helix, signaling protein; 1.95A {Escherichia coli} PDB: 3atp_A
Probab=34.30 E-value=1.8e+02 Score=24.09 Aligned_cols=13 Identities=8% Similarity=-0.107 Sum_probs=5.4
Q ss_pred hHHHHHHHHHHHH
Q 011697 126 DILQNLLAKHDAI 138 (479)
Q Consensus 126 DdLNnVL~RYdr~ 138 (479)
+.+...+..|..+
T Consensus 141 ~~~~~~~~~l~~~ 153 (176)
T 2d4u_A 141 DGFEKQYVAYMEQ 153 (176)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 29
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=33.91 E-value=1.7e+02 Score=30.39 Aligned_cols=62 Identities=13% Similarity=0.214 Sum_probs=35.6
Q ss_pred hHHHhhhhhcHHHHHHHHHHHHHHHHHHHhh-CCCCccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011697 48 TMATEVETLSFSSLDSMRDVMELLSDMLQAV-NPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTT 112 (479)
Q Consensus 48 eq~sklekLS~sELevVrnNVkVLsEML~e~-~Pg~~e~~d~ELlqEL~eqCRsmQ~RI~~LIs~t 112 (479)
.++.+|+.+ +.+|+...+.++.|--.|... ++++. ...+.+.......++|..+|++|-..+
T Consensus 38 ~~l~~LE~~-l~elsn~ts~v~~Lvk~iq~~~~~~Q~--~~~d~~e~~tq~skkml~~~~~~e~~~ 100 (409)
T 1m1j_C 38 GELLEIEGL-LQQATNSTGSIEYLIQHIKTIYPSEKQ--TLPQSIEQLTQKSKKIIEEIIRYENTI 100 (409)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHSCSSTT--CCSSCHHHHHHHHHHHHHHHHHTHHHH
T ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccccC--CCCCchhhHHHHHHHHHHHHHHHHHHh
Confidence 345555555 567777666666544444443 44322 233444555667788888888875544
No 30
>3dyj_A Talin-1; helix bundles, cytoskeletal protein, integrin-bindin site, IBS2, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane; 1.85A {Mus musculus} PDB: 4dj9_B
Probab=33.80 E-value=1.2e+02 Score=30.92 Aligned_cols=75 Identities=17% Similarity=0.237 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhh---cCChH--HHHHHHHhhhHHHHHHHHH
Q 011697 61 LDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTT---TGDEE--LLGRGLELNDILQNLLAKH 135 (479)
Q Consensus 61 LevVrnNVkVLsEML~e~~Pg~~e~~d~ELlqEL~eqCRsmQ~RI~~LIs~---t~DEE--lL~ELL~lNDdLNnVL~RY 135 (479)
|..+|....-|.+||.+-+-......++.-+..|-+.-|.|..-|-.|+.. ++||. .+.+|=..-+.+.+-+..|
T Consensus 120 Lna~kdVa~al~~Li~atK~A~G~~~~dpa~~~Lk~aAk~mv~nV~sLlktVk~vede~~rG~RaLEaai~~I~~el~~~ 199 (332)
T 3dyj_A 120 INAVKDVAKALGDLISATKAAAGKVGDDPAVWQLKNSAKVMVTNVTSLLKTVKAVEDEATKGTRALEATTEHIRQELAVF 199 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHcc
Confidence 888999999999999998766777788888999999999999888777776 45654 5555555556666655555
No 31
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=33.74 E-value=88 Score=28.82 Aligned_cols=14 Identities=7% Similarity=0.162 Sum_probs=9.7
Q ss_pred CCCChhHHHhhhhh
Q 011697 43 RRLDETMATEVETL 56 (479)
Q Consensus 43 ~~l~peq~sklekL 56 (479)
..|++||..++.+|
T Consensus 66 LnLT~EQq~ql~~I 79 (175)
T 3lay_A 66 SPLTTEQQATAQKI 79 (175)
T ss_dssp --CCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHH
Confidence 46899998888555
No 32
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=33.67 E-value=1.5e+02 Score=26.54 Aligned_cols=76 Identities=9% Similarity=0.125 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHH----------HHHHHHHHHHhhhcCChHHHHHHHHhhhH------
Q 011697 64 MRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRC----------RSNQKKLMQMLTTTGDEELLGRGLELNDI------ 127 (479)
Q Consensus 64 VrnNVkVLsEML~e~~Pg~~e~~d~ELlqEL~eqC----------RsmQ~RI~~LIs~t~DEElL~ELL~lNDd------ 127 (479)
++..++.|..=|.+-+| ...-.-..||..|+..| |+.-..|++|+....+.++-.++|++=..
T Consensus 50 ~keA~ral~krl~~~n~-~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~ 128 (163)
T 1x5b_A 50 AKDCLKAIMKRVNHKVP-HVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQ 128 (163)
T ss_dssp HHHHHHHHHHHHTCSSH-HHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 34444455444444332 12223446666777777 44445566666654555555555555333
Q ss_pred ----HHHHHHHHHHHhh
Q 011697 128 ----LQNLLAKHDAIAS 140 (479)
Q Consensus 128 ----LNnVL~RYdr~~k 140 (479)
|..+-+-|+.+++
T Consensus 129 ~~~~l~~i~~~Y~~Lk~ 145 (163)
T 1x5b_A 129 KDPQFSLISATIKSMKE 145 (163)
T ss_dssp TCSTTHHHHHHHHHHHT
T ss_pred CCcccHHHHHHHHHHHH
Confidence 4444555777754
No 33
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.29 E-value=53 Score=25.13 Aligned_cols=36 Identities=22% Similarity=0.113 Sum_probs=24.8
Q ss_pred HHHHHHHHhhhcC-ChHHHHHHHHhhh-HHHHHHHHHH
Q 011697 101 NQKKLMQMLTTTG-DEELLGRGLELND-ILQNLLAKHD 136 (479)
Q Consensus 101 mQ~RI~~LIs~t~-DEElL~ELL~lND-dLNnVL~RYd 136 (479)
++..|.+++.-++ +++.-..+|+.|+ +|+.++..|=
T Consensus 15 ~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff 52 (62)
T 2dal_A 15 LKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFL 52 (62)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3445666666554 3446667888765 9999999884
No 34
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=32.41 E-value=55 Score=28.34 Aligned_cols=83 Identities=5% Similarity=-0.022 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHhhhHHHHHHHHHHHH
Q 011697 59 SSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDAI 138 (479)
Q Consensus 59 sELevVrnNVkVLsEML~e~~Pg~~e~~d~ELlqEL~eqCRsmQ~RI~~LIs~t~DEElL~ELL~lNDdLNnVL~RYdr~ 138 (479)
.||..--+.+..+.++|..... . .....+++..+.+.++.|...|.+|+.-...+..-.+.+.+++.|..++..+...
T Consensus 23 Helr~pL~~i~~~~~~l~~~~~-~-~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 100 (244)
T 3d36_A 23 HEIRNPLTAARGFIQLIEEQPL-A-ADKRRQYARIAIEELDRAEAIITDYLTFAKPAPETPEKLNVKLEIERVIDILRPL 100 (244)
T ss_dssp HHHHHHHHHHHHHHHHGGGCTT-C-HHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCEEEEHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhccc-C-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHH
Confidence 4444444444444455544321 1 1223456666777777777766666654332211123355667778888888877
Q ss_pred hhCCC
Q 011697 139 ASGLP 143 (479)
Q Consensus 139 ~kG~~ 143 (479)
.....
T Consensus 101 ~~~~~ 105 (244)
T 3d36_A 101 ANMSC 105 (244)
T ss_dssp HTTTT
T ss_pred HHhcC
Confidence 65544
No 35
>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}
Probab=31.83 E-value=1.2e+02 Score=25.97 Aligned_cols=74 Identities=16% Similarity=0.262 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCccchhhHHHHH-------------------HHHHHHHHHHHHHHHhh-h-cCChHHHH
Q 011697 61 LDSMRDVMELLSDMLQAVNPSDREAVKDEVIVD-------------------LVSRCRSNQKKLMQMLT-T-TGDEELLG 119 (479)
Q Consensus 61 LevVrnNVkVLsEML~e~~Pg~~e~~d~ELlqE-------------------L~eqCRsmQ~RI~~LIs-~-t~DEElL~ 119 (479)
|+.++..++.|.+.|-.+..+ ..+.+.+.+ |.+-|+.+..-+-.+-. . ..+.+++.
T Consensus 10 l~Ea~e~L~~l~~~l~~le~~---~~d~~~~~~l~R~aHTLKGsA~~~G~~~l~~lah~lE~~l~~lr~g~~~~~~~l~~ 86 (139)
T 2ld6_A 10 VDETKEYLQNLNDTLLELEKN---PEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKITSDLLD 86 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---SSSSSHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSCCCCSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHhHHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 667777777788777765321 112334444 44556655543333322 1 23445888
Q ss_pred HHHHhhhHHHHHHHHHHH
Q 011697 120 RGLELNDILQNLLAKHDA 137 (479)
Q Consensus 120 ELL~lNDdLNnVL~RYdr 137 (479)
.++..-|.|...+..++.
T Consensus 87 ~l~~~~D~l~~~l~~~~~ 104 (139)
T 2ld6_A 87 KIFAGVDMITRMVDKIVS 104 (139)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 899999999999877653
No 36
>1o5h_A Formiminotetrahydrofolate cyclodeaminase; TM1560, structural genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 2.80A {Thermotoga maritima} SCOP: a.191.1.1
Probab=30.55 E-value=75 Score=30.19 Aligned_cols=41 Identities=12% Similarity=0.227 Sum_probs=33.3
Q ss_pred HHHHHHhhCCCCcc-chhhHHHHHHHHHHHHHHHHHHHHhhh
Q 011697 71 LSDMLQAVNPSDRE-AVKDEVIVDLVSRCRSNQKKLMQMLTT 111 (479)
Q Consensus 71 LsEML~e~~Pg~~e-~~d~ELlqEL~eqCRsmQ~RI~~LIs~ 111 (479)
|..|..++.-|.+. ..-++.+++|.+.|++.+.++++||.+
T Consensus 50 L~~MVanLT~gKkky~~~e~~~~~i~~~~~~l~~~ll~l~d~ 91 (214)
T 1o5h_A 50 LAEMVANFTRKKKGYEDVEPEMERIVEAMEEARLKLFDLAKK 91 (214)
T ss_dssp HHHHHHHTTTTCTTCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888876663 344577999999999999999999864
No 37
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.16 E-value=76 Score=24.75 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=26.3
Q ss_pred HHHHHhhhcC--ChHHHHHHHHhhh-HHHHHHHHHHHH
Q 011697 104 KLMQMLTTTG--DEELLGRGLELND-ILQNLLAKHDAI 138 (479)
Q Consensus 104 RI~~LIs~t~--DEElL~ELL~lND-dLNnVL~RYdr~ 138 (479)
+|.+++.-|+ |++.-..+|+.|+ +|+.++..|=..
T Consensus 21 ~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~ 58 (67)
T 2dam_A 21 KLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNE 58 (67)
T ss_dssp HHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4666666555 6667778999987 999999998554
No 38
>1xou_B Z5138 gene product; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.2
Probab=28.94 E-value=45 Score=27.79 Aligned_cols=19 Identities=16% Similarity=0.378 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011697 58 FSSLDSMRDVMELLSDMLQ 76 (479)
Q Consensus 58 ~sELevVrnNVkVLsEML~ 76 (479)
..|+++|+.||++|+|--.
T Consensus 28 iaefdvvke~v~~l~ekak 46 (95)
T 1xou_B 28 IAEFDVVKESVNELSEKAK 46 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 4788999999998887543
No 39
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=28.63 E-value=3e+02 Score=27.02 Aligned_cols=86 Identities=7% Similarity=0.030 Sum_probs=44.5
Q ss_pred HHHhhhhhcHHHHHHHHHHHHHHHHHHHhhCCCCcc---chhhHHHHHHHHHHHHHHHHHHHHhhhcCCh-HHHHHHHHh
Q 011697 49 MATEVETLSFSSLDSMRDVMELLSDMLQAVNPSDRE---AVKDEVIVDLVSRCRSNQKKLMQMLTTTGDE-ELLGRGLEL 124 (479)
Q Consensus 49 q~sklekLS~sELevVrnNVkVLsEML~e~~Pg~~e---~~d~ELlqEL~eqCRsmQ~RI~~LIs~t~DE-ElL~ELL~l 124 (479)
...++..+ +.+|-..|..+.-+.++|..+.-.... ......+.|+++.|.++...+-.+-+.+..= |+. +=.+
T Consensus 219 ~l~~l~~l-rr~l~~lrr~l~p~~~vl~~L~~~~~~~~~~~~~~~lrDv~d~~~~~~e~~~~~re~l~~l~d~~--~s~i 295 (363)
T 2iub_A 219 TVQRTHQL-KRNLVELRKTIWPLREVLSSLYRDVPPLIEKETVPYFRDVYDHTIQIADTVETFRDIVSGLLDVY--LSSV 295 (363)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 34444444 577778888888888888877432221 2233455666666665554444332222111 100 1124
Q ss_pred hhHHHHHHHHHHH
Q 011697 125 NDILQNLLAKHDA 137 (479)
Q Consensus 125 NDdLNnVL~RYdr 137 (479)
|.++|+++.+.--
T Consensus 296 s~~~N~imk~LTi 308 (363)
T 2iub_A 296 SNKTNEVMKVLTI 308 (363)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5566666655443
No 40
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=28.05 E-value=88 Score=29.21 Aligned_cols=78 Identities=14% Similarity=0.035 Sum_probs=47.3
Q ss_pred hhhhcHHHHHHHHHHH-HHHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHhhhHHHHH
Q 011697 53 VETLSFSSLDSMRDVM-ELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNL 131 (479)
Q Consensus 53 lekLS~sELevVrnNV-kVLsEML~e~~Pg~~e~~d~ELlqEL~eqCRsmQ~RI~~LIs~t~DEElL~ELL~lNDdLNnV 131 (479)
+..+|.+||...-++= ++|.+++..+..-.......+-+..|.+...+++++|-.+...+ ..+++.++.--...
T Consensus 35 L~~LS~~eL~~LL~~~~dlL~~~v~~l~~~q~~~~~~e~l~s~ae~ll~l~~~Le~~r~~l-----~~~l~~~~~L~~~~ 109 (192)
T 2p22_C 35 INLLSSKEIIDLIQTHRHQLELYVTKFNPLTDFAGKIHAFRDQFKQLEENFEDLHEQKDKV-----QALLENARILESKY 109 (192)
T ss_dssp GGSCTTHHHHHHHHHCHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHhChHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 5667888999999998 99999999996533333334444555555555555555544433 23334444444444
Q ss_pred HHHH
Q 011697 132 LAKH 135 (479)
Q Consensus 132 L~RY 135 (479)
-.+|
T Consensus 110 ~~k~ 113 (192)
T 2p22_C 110 VASW 113 (192)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 41
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=27.85 E-value=65 Score=28.65 Aligned_cols=79 Identities=14% Similarity=0.225 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhhcCCh----HHHHHHHHhhhHHHHHHHHH
Q 011697 60 SLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDE----ELLGRGLELNDILQNLLAKH 135 (479)
Q Consensus 60 ELevVrnNVkVLsEML~e~~Pg~~e~~d~ELlqEL~eqCRsmQ~RI~~LIs~t~DE----ElL~ELL~lNDdLNnVL~RY 135 (479)
=|..+++.+++|.+.+...+. ....+.+..+.+.|+.|...|-+|+.-..-+ .+-.+-+.+++-+..++..|
T Consensus 34 PL~~i~~~~~~l~~~~~~~~~----~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 109 (258)
T 2c2a_A 34 PLTAIKAYAETIYNSLGELDL----STLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAI 109 (258)
T ss_dssp HHHHHHHHHHHHHHTGGGCCT----TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCEEEEHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCccceecHHHHHHHHHHHH
Confidence 355666666666555444322 1234677777777777776666654421100 01112345566667777777
Q ss_pred HHHhhCC
Q 011697 136 DAIASGL 142 (479)
Q Consensus 136 dr~~kG~ 142 (479)
..+...+
T Consensus 110 ~~~~~~~ 116 (258)
T 2c2a_A 110 KEFASSH 116 (258)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 6664433
No 42
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=25.58 E-value=3.7e+02 Score=24.71 Aligned_cols=74 Identities=14% Similarity=0.171 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhh--cCChHHHHHHH-HhhhHHHHHHHHH
Q 011697 62 DSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTT--TGDEELLGRGL-ELNDILQNLLAKH 135 (479)
Q Consensus 62 evVrnNVkVLsEML~e~~Pg~~e~~d~ELlqEL~eqCRsmQ~RI~~LIs~--t~DEElL~ELL-~lNDdLNnVL~RY 135 (479)
.++++-+|+.--+---++-++-...+..++.++.+.|+...-+++.+-+- +-|-..|.++| +..|.|..++.+|
T Consensus 35 kv~KniIKi~vKigvl~rn~qf~~eEl~~~~~fr~k~~~~amt~iSF~eVdfTfD~~~L~~~L~ec~~lL~~lv~~H 111 (161)
T 3f4m_A 35 RVIKDLIKVAIKVAVLHRNGSFGPSELALATRFRQKLRQGAMTALSFGEVDFTFEAAVLAGLLTECRDVLLELVEHH 111 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTSTTSCCCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhheeeecCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCccccHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555566655443334335666778888999999999998888887653 44666555444 5888888888766
No 43
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=25.06 E-value=1e+02 Score=28.78 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=38.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhcCChH--HHHHHHHhhhHHHHHHHH
Q 011697 86 VKDEVIVDLVSRCRSNQKKLMQMLTTTGDEE--LLGRGLELNDILQNLLAK 134 (479)
Q Consensus 86 ~d~ELlqEL~eqCRsmQ~RI~~LIs~t~DEE--lL~ELL~lNDdLNnVL~R 134 (479)
.-.|+|.||..-|.+.-.++++-|..++|+= .-.+-+.+.++|-+.|.-
T Consensus 121 ~paE~ireli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqTl~e 171 (175)
T 3mud_A 121 NPAEVIRELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQTLLE 171 (175)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458899999999999999999998888763 555677778887766653
No 44
>1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Probab=24.39 E-value=2.8e+02 Score=24.68 Aligned_cols=42 Identities=14% Similarity=0.137 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCh---------HHHHHHHHhhhHHHHHH
Q 011697 91 IVDLVSRCRSNQKKLMQMLTTTGDE---------ELLGRGLELNDILQNLL 132 (479)
Q Consensus 91 lqEL~eqCRsmQ~RI~~LIs~t~DE---------ElL~ELL~lNDdLNnVL 132 (479)
+.+|++.|...+-=|+-+|...+|. |++.++-.+=+.+...+
T Consensus 19 i~~l~e~~~~vk~WI~l~IPkiEDGNNFGV~VQeevl~~l~~v~~~~~~~~ 69 (140)
T 1avo_B 19 IKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFH 69 (140)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcccCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888888877663 45555555555554443
No 45
>3hiu_A Uncharacterized protein; APC40011, XCC3681, xanthomonas campestris PV. campestris STR. ATCC 33913, structural genomics, PSI-2; HET: MSE; 1.85A {Xanthomonas campestris PV}
Probab=24.11 E-value=2e+02 Score=26.21 Aligned_cols=65 Identities=6% Similarity=0.060 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHhhhHHHHHHHHHHH
Q 011697 59 SSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDA 137 (479)
Q Consensus 59 sELevVrnNVkVLsEML~e~~Pg~~e~~d~ELlqEL~eqCRsmQ~RI~~LIs~t~DEElL~ELL~lNDdLNnVL~RYdr 137 (479)
..|+..++-++.|.+++..+.- .....+ +.+.-|+.-++. ++....+++++.-+| -...|+.|+-
T Consensus 44 ~Hl~eT~~qi~rLe~vf~~lg~-~~~~~k-~~m~gli~e~~~-------~~~~~~~d~v~d~~l-----aaq~vEHyEI 108 (166)
T 3hiu_A 44 QHVEETQQQSAGVQRCLELLNG-SIPTAK-GMLSSVLASMHA-------AGNSMMTDEVTKGVG-----ISYAFEHLEI 108 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-CCCCCC--------------------------CCHHHHHHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCC-CCCcCc-hHHHHHHHHHHH-------HhccccCcHHHHHHH-----HHHHHHHHHH
Confidence 5699999999999999999842 333333 467888877775 556667777777666 4455555553
No 46
>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor, chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A
Probab=24.01 E-value=2.5e+02 Score=25.10 Aligned_cols=52 Identities=8% Similarity=0.021 Sum_probs=27.9
Q ss_pred HH-HHHHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011697 61 LD-SMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTT 112 (479)
Q Consensus 61 Le-vVrnNVkVLsEML~e~~Pg~~e~~d~ELlqEL~eqCRsmQ~RI~~LIs~t 112 (479)
++ .++..++-+.+.|..+...-..+....+|.+|-+....++..+-+++.-.
T Consensus 50 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~Y~~~f~~~~~~~ 102 (258)
T 2yfa_A 50 AAANTLAKLDAFSKQQAYLATTFKSPENVKLLGELGDTISAYKLSLNKMRQGY 102 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 45555554455554443222224455666777776766666666665533
No 47
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=23.90 E-value=65 Score=23.66 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 011697 89 EVIVDLVSRCRSNQKKLMQMLTTT 112 (479)
Q Consensus 89 ELlqEL~eqCRsmQ~RI~~LIs~t 112 (479)
+--+.+|..|...|+-|+.|+++-
T Consensus 12 ~rkerIv~eCnavrqALQdLlseY 35 (40)
T 4e17_B 12 DRRERIVAECNAVRQALQDLLSEY 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567999999999999999864
No 48
>3ogh_B Protein YCIE; iron-binding, MCSG, four-helix-bundle, structural genomics, protein structure initiative; HET: MSE; 1.65A {Escherichia coli O6}
Probab=23.31 E-value=1.8e+02 Score=26.55 Aligned_cols=67 Identities=10% Similarity=0.186 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHhhhHHHHHHHHHHH
Q 011697 58 FSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDA 137 (479)
Q Consensus 58 ~sELevVrnNVkVLsEML~e~~Pg~~e~~d~ELlqEL~eqCRsmQ~RI~~LIs~t~DEElL~ELL~lNDdLNnVL~RYdr 137 (479)
...|+..++-++.|.+++..+.- .....+ +.+.-|+.-|+. ++....+++++.-+| ....|+.|+-
T Consensus 46 e~Hl~eT~~qi~rLe~vf~~lg~-~~~~~k-~~m~gli~e~~~-------~~~~~~~d~v~d~~l-----aaq~vEHyEI 111 (171)
T 3ogh_B 46 EQHLSETKNQIVQLETILDRNDI-SRSVIK-DSMSKMAALGQS-------IGGIFPSDEIVKGSI-----SGYVFEQFEI 111 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC-CCCHHH-HHHHTTC-------------------CHHHHHHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC-CCccch-HHHHHHHHHHHH-------HhccccccHHHHHHH-----HHHHHHHHHH
Confidence 35699999999999999999842 333344 477888877774 456666777777666 3566776664
Q ss_pred H
Q 011697 138 I 138 (479)
Q Consensus 138 ~ 138 (479)
-
T Consensus 112 A 112 (171)
T 3ogh_B 112 A 112 (171)
T ss_dssp H
T ss_pred H
Confidence 3
No 49
>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+ and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia coli} SCOP: c.1.12.3 PDB: 1fiy_A* 1qb4_A
Probab=23.15 E-value=1.7e+02 Score=33.19 Aligned_cols=78 Identities=15% Similarity=0.180 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHHHHHH-------HHHHHHhhhcCChH--HHHHHHHhhhHHHHHHHH
Q 011697 64 MRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQ-------KKLMQMLTTTGDEE--LLGRGLELNDILQNLLAK 134 (479)
Q Consensus 64 VrnNVkVLsEML~e~~Pg~~e~~d~ELlqEL~eqCRsmQ-------~RI~~LIs~t~DEE--lL~ELL~lNDdLNnVL~R 134 (479)
.|.++++|.++|.++--......=.|+++++...|+..+ ..|.++|...++++ .+..+..+==.|-|+-+.
T Consensus 8 l~~dv~lLg~lLg~vl~~~~g~~~~~~ve~ir~l~~~~r~~~~~~~~~l~~~l~~l~~~~~~~v~rAFs~~~~L~NiAE~ 87 (883)
T 1jqn_A 8 LRSNVSMLGKVLGETIKDALGEHILERVETIRKLSKSSRAGNDANRQELLTTLQNLSNDELLPVARAFSQFLNLANTAEQ 87 (883)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666655321111112344455544443333 45788999998887 667888888888899998
Q ss_pred HHHHhhC
Q 011697 135 HDAIASG 141 (479)
Q Consensus 135 Ydr~~kG 141 (479)
+.++...
T Consensus 88 ~~~~r~~ 94 (883)
T 1jqn_A 88 YHSISPK 94 (883)
T ss_dssp HHHHCTT
T ss_pred HHHHHHH
Confidence 8888543
No 50
>3nuf_A PRD-containing transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PG4; 1.38A {Lactobacillus casei}
Probab=21.92 E-value=31 Score=30.52 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=38.3
Q ss_pred HHHHHHhhCCCCc-cchhhHHHHHHHHHHHHHHHHHHHHhhhcCChH
Q 011697 71 LSDMLQAVNPSDR-EAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEE 116 (479)
Q Consensus 71 LsEML~e~~Pg~~-e~~d~ELlqEL~eqCRsmQ~RI~~LIs~t~DEE 116 (479)
|.+|+.-..-|+. -..|.+|.+|+-..|.++-++|++.+..+.++|
T Consensus 58 l~Amv~Rs~~GE~LPeVd~sLF~EIS~es~~LA~~Vv~~~g~L~~eE 104 (119)
T 3nuf_A 58 LIEMLGRSKSGEQLPAVDPTMFAEVSQKSLDLADQVVQHIGHLEVAE 104 (119)
T ss_dssp HHHHHHHHHHCCCCCCCCGGGGTTSCHHHHHHHHHHHHHHCSSCTTH
T ss_pred HHHHHHHhccCCcCCccCHHHHHHcCHHHHHHHHHHHHHhcCCCHHH
Confidence 5667766655554 346889999999999999999999999999999
No 51
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=21.51 E-value=1.2e+02 Score=21.53 Aligned_cols=27 Identities=15% Similarity=0.060 Sum_probs=22.7
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHHHhhC
Q 011697 115 EELLGRGLELNDILQNLLAKHDAIASG 141 (479)
Q Consensus 115 EElL~ELL~lNDdLNnVL~RYdr~~kG 141 (479)
||-+++||.-|-+|.+-..|-..+..+
T Consensus 7 EdkVEeLl~~~~~Le~eV~RL~~ll~~ 33 (34)
T 2hy6_A 7 ADAVEELASANYHLANAVARLAKAVGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 567889999999999999998888765
No 52
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=21.47 E-value=4.4e+02 Score=25.47 Aligned_cols=79 Identities=9% Similarity=-0.063 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCc---cchhhHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHH-HHHhhhHHHHHHH
Q 011697 58 FSSLDSMRDVMELLSDMLQAVNPSDR---EAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGR-GLELNDILQNLLA 133 (479)
Q Consensus 58 ~sELevVrnNVkVLsEML~e~~Pg~~---e~~d~ELlqEL~eqCRsmQ~RI~~LIs~t~DEElL~E-LL~lNDdLNnVL~ 133 (479)
+.+|-..|..+.-+.++|..+.-... ...+.+.+.++++.|.++...+-.+-+.+.. ++.. +-.+|-++|+++.
T Consensus 203 rr~l~~lrr~l~~~~~vl~~L~~~~~~~~~~~~~~~l~dv~~~~~~l~e~~~~~~e~l~~--l~d~~~s~is~~~N~~mk 280 (339)
T 4ev6_A 203 RKTLVYFHKSLIANRDVLVLLKRKYLPITTKEDRENFEDLYYDTLQLIDMSATYREVLTS--MMDITLSLENIKMNQIMK 280 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCBTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666532221 2234456677777766555544333322211 1111 1234556777766
Q ss_pred HHHHH
Q 011697 134 KHDAI 138 (479)
Q Consensus 134 RYdr~ 138 (479)
+.--+
T Consensus 281 ~LTii 285 (339)
T 4ev6_A 281 ILTMV 285 (339)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 53
>3o3m_B Beta subunit 2-hydroxyacyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_B* 3o3o_B
Probab=21.28 E-value=6.1e+02 Score=25.12 Aligned_cols=58 Identities=10% Similarity=0.119 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHhhhHHHHHHHHHHHHhhCCCCC
Q 011697 88 DEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDAIASGLPIP 145 (479)
Q Consensus 88 ~ELlqEL~eqCRsmQ~RI~~LIs~t~DEElL~ELL~lNDdLNnVL~RYdr~~kG~~~~ 145 (479)
.+-++-+.++.+.+..+|-++....-|+|.|.+.+++-.+..+++.+..++.+..+.+
T Consensus 130 ~~~~~y~~~el~~l~~~LE~~tG~~i~~e~L~eai~~~N~~r~~~~~~~~l~~~~p~p 187 (385)
T 3o3m_B 130 EAGVKYLISEYKGVKRELEEICGYEIEEAKIHESIEVYNEHRKTMRDFVEVAYKHSNT 187 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 4556778888888888888888888899999999999999999999999998876544
No 54
>2l7a_A Talin-1; vinculin, bundle, focal adhesion, integrin, cell ADHE; NMR {Mus musculus}
Probab=20.84 E-value=2.4e+02 Score=25.02 Aligned_cols=73 Identities=18% Similarity=0.136 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhhc-------CChHHHHHHHHhhhHHHHHHH
Q 011697 61 LDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTT-------GDEELLGRGLELNDILQNLLA 133 (479)
Q Consensus 61 LevVrnNVkVLsEML~e~~Pg~~e~~d~ELlqEL~eqCRsmQ~RI~~LIs~t-------~DEElL~ELL~lNDdLNnVL~ 133 (479)
+..++.-....+.+|..++-.-....|-+..+.|...++.+..-+-+||+.+ .|.+.-..|...+++|..+..
T Consensus 43 v~~ak~iAr~a~~Li~~~K~eAd~seDp~~~~rLl~AAk~La~At~~MVeaAK~~A~NP~d~~~q~~Lr~Aae~L~~at~ 122 (131)
T 2l7a_A 43 VRQARILAQATSDLVNAIKADAEGESDLENSRKLLSAAKILADATAKMVEAAKGAAAHPDSEEQQQRLREAAEGLRMATN 122 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5555555666666666664322223466888999999999999888888754 345677788889998876654
No 55
>3fyq_A CG6831-PA (talin); 5-helix bundle, cell adhesion; 1.95A {Drosophila melanogaster}
Probab=20.29 E-value=1.9e+02 Score=27.59 Aligned_cols=73 Identities=16% Similarity=0.249 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhhc---CChH--HHHHHHHhhhHHHHHHH
Q 011697 61 LDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTT---GDEE--LLGRGLELNDILQNLLA 133 (479)
Q Consensus 61 LevVrnNVkVLsEML~e~~Pg~~e~~d~ELlqEL~eqCRsmQ~RI~~LIs~t---~DEE--lL~ELL~lNDdLNnVL~ 133 (479)
|..+|....-|.+++++-+-......++--+..|-+.-+.|..-|-.|+..+ +||. .+.+|=.+-..|++-|.
T Consensus 111 Lna~kdVa~aL~~Li~atK~a~g~~~~d~~~~~Lk~sak~~~~nV~sLl~tV~~v~de~~rG~raLe~~i~~I~~el~ 188 (199)
T 3fyq_A 111 INAVKDVASALGDLINCTKLASGKSINDPSMQDLKESARVMVLNVSSLLKTVKAVEDEHTRGTRAMEATVEAISQEIR 188 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHH
Confidence 7888888899999999876445555555568888888888888777666654 4664 56666555555555443
Done!