Query 011699
Match_columns 479
No_of_seqs 289 out of 3177
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 04:15:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011699.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011699hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 2E-29 4.3E-34 226.1 9.5 381 17-428 73-462 (483)
2 KOG4341 F-box protein containi 99.9 6.9E-28 1.5E-32 216.3 10.1 317 58-403 137-461 (483)
3 KOG4194 Membrane glycoprotein 99.8 7.7E-22 1.7E-26 184.4 2.8 297 58-405 124-427 (873)
4 PLN00113 leucine-rich repeat r 99.8 6E-19 1.3E-23 191.1 13.7 205 57-289 138-342 (968)
5 PLN00113 leucine-rich repeat r 99.8 1.6E-18 3.5E-23 187.8 13.0 248 58-343 117-366 (968)
6 cd00116 LRR_RI Leucine-rich re 99.8 2.7E-16 5.9E-21 148.6 24.6 167 228-404 137-317 (319)
7 KOG4194 Membrane glycoprotein 99.8 1.8E-20 3.9E-25 175.4 -4.2 342 6-402 89-447 (873)
8 KOG2120 SCF ubiquitin ligase, 99.7 6.1E-17 1.3E-21 140.0 10.3 254 154-427 139-396 (419)
9 KOG2120 SCF ubiquitin ligase, 99.7 1.8E-17 3.9E-22 143.2 7.0 250 58-336 135-390 (419)
10 KOG1909 Ran GTPase-activating 99.7 4.9E-16 1.1E-20 137.5 12.2 256 150-418 29-325 (382)
11 cd00116 LRR_RI Leucine-rich re 99.7 2.2E-14 4.8E-19 135.6 23.9 259 136-405 8-289 (319)
12 PLN03210 Resistant to P. syrin 99.6 3.3E-15 7.2E-20 162.6 13.6 125 58-212 610-734 (1153)
13 KOG0444 Cytoskeletal regulator 99.6 2.8E-17 6.1E-22 155.5 -6.0 338 4-405 16-373 (1255)
14 KOG1909 Ran GTPase-activating 99.6 2.3E-14 5E-19 127.0 11.0 217 149-390 90-322 (382)
15 KOG1947 Leucine rich repeat pr 99.5 3.1E-13 6.7E-18 135.5 13.1 255 137-405 174-438 (482)
16 KOG0444 Cytoskeletal regulator 99.5 1.4E-15 3E-20 144.2 -3.8 201 148-381 170-376 (1255)
17 KOG1947 Leucine rich repeat pr 99.5 3.3E-13 7.1E-18 135.3 12.3 246 146-405 156-412 (482)
18 PLN03210 Resistant to P. syrin 99.5 3.6E-13 7.8E-18 146.8 13.3 308 16-382 584-908 (1153)
19 COG5238 RNA1 Ran GTPase-activa 99.2 1.6E-10 3.5E-15 99.4 11.8 90 307-404 185-282 (388)
20 KOG0618 Serine/threonine phosp 99.2 2.1E-12 4.6E-17 128.2 -1.6 127 253-405 359-487 (1081)
21 KOG0618 Serine/threonine phosp 99.1 8.9E-12 1.9E-16 123.9 -1.3 128 227-378 358-487 (1081)
22 KOG3207 Beta-tubulin folding c 99.1 2.6E-11 5.6E-16 111.0 1.8 209 58-288 120-335 (505)
23 KOG3207 Beta-tubulin folding c 99.1 3.8E-11 8.3E-16 109.8 2.8 161 115-289 119-281 (505)
24 COG5238 RNA1 Ran GTPase-activa 98.9 4.6E-08 1E-12 84.5 15.2 92 307-405 157-253 (388)
25 PRK15387 E3 ubiquitin-protein 98.9 4.7E-09 1E-13 107.3 7.9 31 59-94 222-252 (788)
26 PRK15387 E3 ubiquitin-protein 98.9 2.7E-09 5.8E-14 109.0 5.9 224 57-352 240-463 (788)
27 KOG2982 Uncharacterized conser 98.8 3.3E-09 7.3E-14 92.6 4.5 232 153-426 47-287 (418)
28 KOG3665 ZYG-1-like serine/thre 98.8 3.2E-08 7E-13 100.7 10.8 214 59-288 60-284 (699)
29 KOG4237 Extracellular matrix p 98.7 1E-09 2.2E-14 99.4 -1.7 147 7-188 53-199 (498)
30 KOG3665 ZYG-1-like serine/thre 98.7 1.1E-07 2.3E-12 97.0 12.1 158 177-340 122-282 (699)
31 KOG0472 Leucine-rich repeat pr 98.6 7.9E-10 1.7E-14 100.3 -6.9 84 174-264 225-308 (565)
32 PRK15370 E3 ubiquitin-protein 98.6 3.2E-07 7E-12 94.5 10.9 34 58-95 198-231 (754)
33 PRK15370 E3 ubiquitin-protein 98.5 4.7E-07 1E-11 93.3 10.6 205 151-405 220-426 (754)
34 KOG0472 Leucine-rich repeat pr 98.5 8.1E-09 1.8E-13 93.9 -3.6 103 277-405 433-539 (565)
35 KOG4237 Extracellular matrix p 98.4 7.3E-08 1.6E-12 87.7 1.0 84 307-405 274-357 (498)
36 PF14580 LRR_9: Leucine-rich r 98.4 2.9E-08 6.3E-13 82.9 -1.4 85 307-404 64-150 (175)
37 PF14580 LRR_9: Leucine-rich r 98.3 4.6E-07 1E-11 75.8 3.3 128 152-288 20-149 (175)
38 KOG1259 Nischarin, modulator o 98.2 8.9E-07 1.9E-11 77.8 3.2 145 251-422 282-434 (490)
39 KOG3864 Uncharacterized conser 98.2 2.1E-06 4.6E-11 71.3 4.8 102 309-422 103-208 (221)
40 KOG2982 Uncharacterized conser 98.1 5.8E-06 1.2E-10 72.8 6.0 194 140-345 60-261 (418)
41 KOG3864 Uncharacterized conser 98.1 3.3E-06 7.2E-11 70.2 4.3 89 254-347 102-190 (221)
42 KOG1259 Nischarin, modulator o 98.1 1.8E-06 4E-11 75.9 2.0 126 227-378 283-410 (490)
43 KOG4308 LRR-containing protein 97.8 2.1E-05 4.5E-10 77.1 4.5 315 61-405 89-443 (478)
44 PF13855 LRR_8: Leucine rich r 97.6 1.4E-05 3E-10 54.6 -0.1 59 204-264 2-60 (61)
45 KOG4658 Apoptotic ATPase [Sign 97.6 3.5E-05 7.6E-10 81.1 2.5 236 149-405 543-781 (889)
46 KOG0617 Ras suppressor protein 97.6 9.5E-07 2.1E-11 71.2 -7.0 148 151-316 33-182 (264)
47 KOG4658 Apoptotic ATPase [Sign 97.5 9.8E-05 2.1E-09 77.8 5.3 107 58-187 544-652 (889)
48 KOG1859 Leucine-rich repeat pr 97.5 1.4E-05 3E-10 78.8 -1.1 108 148-265 184-291 (1096)
49 PF13855 LRR_8: Leucine rich r 97.5 2.9E-05 6.2E-10 52.9 0.3 59 228-289 1-59 (61)
50 KOG1859 Leucine-rich repeat pr 97.4 1.1E-05 2.3E-10 79.5 -3.0 106 226-344 185-290 (1096)
51 KOG4308 LRR-containing protein 97.3 6.8E-05 1.5E-09 73.5 0.0 218 153-382 89-333 (478)
52 KOG0617 Ras suppressor protein 97.2 1.3E-06 2.9E-11 70.4 -10.1 37 225-263 53-89 (264)
53 KOG2739 Leucine-rich acidic nu 96.9 0.00037 8E-09 60.8 1.2 109 278-404 42-153 (260)
54 KOG2739 Leucine-rich acidic nu 96.7 9.9E-05 2.1E-09 64.2 -3.4 63 278-343 64-126 (260)
55 PLN03150 hypothetical protein; 96.6 0.0042 9E-08 64.0 6.5 105 230-345 420-527 (623)
56 PRK15386 type III secretion pr 96.6 0.0064 1.4E-07 57.8 7.0 57 150-216 51-107 (426)
57 smart00367 LRR_CC Leucine-rich 96.6 0.0035 7.6E-08 34.0 3.1 22 333-354 2-23 (26)
58 PLN03150 hypothetical protein; 96.5 0.0051 1.1E-07 63.3 6.8 106 254-379 419-527 (623)
59 PF12799 LRR_4: Leucine Rich r 96.3 0.0071 1.5E-07 37.7 3.9 38 228-267 1-38 (44)
60 smart00367 LRR_CC Leucine-rich 96.3 0.0048 1E-07 33.5 2.7 25 366-390 1-25 (26)
61 KOG2123 Uncharacterized conser 96.2 0.0013 2.9E-08 57.8 -0.0 103 58-183 18-123 (388)
62 COG4886 Leucine-rich repeat (L 96.1 0.0048 1E-07 60.1 3.6 172 82-289 114-287 (394)
63 PRK15386 type III secretion pr 96.1 0.014 3.1E-07 55.5 6.4 139 200-378 49-188 (426)
64 KOG1644 U2-associated snRNP A' 96.0 0.0044 9.5E-08 52.0 2.4 86 307-405 64-151 (233)
65 COG4886 Leucine-rich repeat (L 95.8 0.0091 2E-07 58.2 4.2 60 204-267 141-200 (394)
66 KOG1644 U2-associated snRNP A' 95.8 0.008 1.7E-07 50.5 3.1 10 332-341 139-148 (233)
67 PF12799 LRR_4: Leucine Rich r 95.5 0.013 2.9E-07 36.5 2.6 35 59-95 1-35 (44)
68 KOG2123 Uncharacterized conser 95.2 0.0082 1.8E-07 53.0 1.2 117 278-415 18-138 (388)
69 KOG4579 Leucine-rich repeat (L 94.4 0.012 2.6E-07 46.3 0.2 63 223-289 48-110 (177)
70 KOG0531 Protein phosphatase 1, 94.4 0.0062 1.3E-07 59.6 -1.9 107 148-266 92-199 (414)
71 PF13516 LRR_6: Leucine Rich r 93.8 0.064 1.4E-06 28.3 2.3 22 253-274 2-23 (24)
72 PF13516 LRR_6: Leucine Rich r 93.7 0.051 1.1E-06 28.7 1.8 19 334-353 3-21 (24)
73 KOG4579 Leucine-rich repeat (L 93.1 0.018 3.8E-07 45.4 -1.0 112 153-271 29-141 (177)
74 KOG0531 Protein phosphatase 1, 91.8 0.051 1.1E-06 53.3 0.1 100 201-316 93-195 (414)
75 KOG0532 Leucine-rich repeat (L 90.9 0.016 3.6E-07 56.3 -4.1 127 152-289 144-270 (722)
76 smart00368 LRR_RI Leucine rich 89.0 0.62 1.4E-05 25.6 2.9 23 253-275 2-24 (28)
77 smart00368 LRR_RI Leucine rich 88.2 0.85 1.8E-05 25.0 3.1 23 333-356 2-24 (28)
78 KOG3763 mRNA export factor TAP 87.1 1.3 2.8E-05 43.6 5.5 86 328-424 213-307 (585)
79 KOG0532 Leucine-rich repeat (L 86.7 0.078 1.7E-06 51.9 -2.7 153 224-404 117-270 (722)
80 PF13306 LRR_5: Leucine rich r 83.2 0.4 8.6E-06 38.0 0.2 11 150-160 34-44 (129)
81 PF13504 LRR_7: Leucine rich r 82.2 1.1 2.3E-05 21.3 1.4 12 254-265 2-13 (17)
82 PF13306 LRR_5: Leucine rich r 79.3 0.5 1.1E-05 37.4 -0.5 9 227-235 34-42 (129)
83 KOG3763 mRNA export factor TAP 75.1 4.1 8.8E-05 40.2 4.2 87 277-375 216-309 (585)
84 PF00560 LRR_1: Leucine Rich R 56.8 5.8 0.00013 20.1 0.8 13 254-266 1-13 (22)
85 smart00370 LRR Leucine-rich re 55.0 11 0.00023 19.9 1.7 15 253-267 2-16 (26)
86 smart00369 LRR_TYP Leucine-ric 55.0 11 0.00023 19.9 1.7 15 253-267 2-16 (26)
87 KOG4242 Predicted myosin-I-bin 53.9 20 0.00043 35.0 4.3 19 365-384 438-456 (553)
88 PF07723 LRR_2: Leucine Rich R 51.7 11 0.00024 20.2 1.4 8 309-316 2-9 (26)
89 KOG3735 Tropomodulin and leiom 50.7 36 0.00078 31.6 5.3 28 329-357 251-278 (353)
90 KOG3735 Tropomodulin and leiom 41.7 73 0.0016 29.7 5.8 100 295-403 188-292 (353)
91 smart00365 LRR_SD22 Leucine-ri 38.5 30 0.00065 18.6 1.8 14 253-266 2-15 (26)
92 PHA02608 67 prohead core prote 31.4 34 0.00074 23.9 1.6 13 450-462 39-51 (80)
93 PF05756 S-antigen: S-antigen 22.2 52 0.0011 22.8 1.2 14 449-462 55-68 (94)
94 COG5129 MAK16 Nuclear protein 21.8 45 0.00097 28.6 1.0 12 447-458 227-238 (303)
95 smart00364 LRR_BAC Leucine-ric 21.2 60 0.0013 17.5 1.0 14 253-266 2-15 (26)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.96 E-value=2e-29 Score=226.07 Aligned_cols=381 Identities=21% Similarity=0.271 Sum_probs=297.1
Q ss_pred HHhhhccceeecccccchhhhhccCCCCCCCCCCCccCCCCCCCCcEEEeec--CccChhHHHHHHHcCC-CccEEeccC
Q 011699 17 ALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSV--DYITDAMVGTISQGLV-SLTHLDLRD 93 (479)
Q Consensus 17 ~~~p~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~--~~~~~~~~~~l~~~~~-~L~~L~l~~ 93 (479)
..+||++....++++..|.+.+..+++.. |+..... -.+.++.++.. -.+...++..+.+.+. .|+.|.++|
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~----~n~~AlD-~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG 147 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTM----WNKLALD-GSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRG 147 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHH----hhhhhhc-cccceeeehhcchhcCCCcceehHhhhhccccccccccc
Confidence 34566777777777766655544333321 1111000 12333344431 2333444555555553 688888888
Q ss_pred CCCCCCccccccchHHHHhhh-cCCCccEEecccccccccccccccchHHHHHHHHhCCCCCEEEEcCCcccCHHHHHHH
Q 011699 94 APLIEPRITFDLTNSGLQQIN-QHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTI 172 (479)
Q Consensus 94 ~~~l~~~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l 172 (479)
|. .+.+..+..+. .||++++|.+. ++..+++..+..++..|++|+.|++..|..+++..++.+
T Consensus 148 ~r--------~v~~sslrt~~~~CpnIehL~l~--------gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l 211 (483)
T KOG4341|consen 148 CR--------AVGDSSLRTFASNCPNIEHLALY--------GCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYL 211 (483)
T ss_pred cc--------cCCcchhhHHhhhCCchhhhhhh--------cceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHH
Confidence 85 34444555443 78888888884 467888888888888899999999999888888888888
Q ss_pred HHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHhh-CCCCCCEEecCCCCCCChHHHHhhh-
Q 011699 173 LHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLA-SNTGIKVLDLRDCKNLGDEALRAIS- 250 (479)
Q Consensus 173 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~l~~~~~~~l~- 250 (479)
...|++|+.|+++.|+.++..++..+.+.+..++.+.+.||...+...+.... .++-+..+++..|+.+++..+..+.
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC 291 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhh
Confidence 88999999999999988888888888888888888888888888777766554 6777888888888888888876666
Q ss_pred cCCCCcEEEccCC-CCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHH
Q 011699 251 SLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLA 329 (479)
Q Consensus 251 ~l~~L~~L~l~~~-~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~L~~~~~i~~~~~~~l~ 329 (479)
.+..|+.|..+++ .+++..+..+++ .+++|+.|.+++|.++++.++..+...| +.|+.+++..|..+.+..+..+.
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~-~~~~L~~l~l~~c~~fsd~~ft~l~rn~--~~Le~l~~e~~~~~~d~tL~sls 368 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQ-HCHNLQVLELSGCQQFSDRGFTMLGRNC--PHLERLDLEECGLITDGTLASLS 368 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhc-CCCceEEEeccccchhhhhhhhhhhcCC--hhhhhhcccccceehhhhHhhhc
Confidence 6778999998886 788888999999 8999999999999999999999999988 89999999999888888888899
Q ss_pred hcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccCCCCCCHHHHHHhhccCCCCccEEEecCCC--CH
Q 011699 330 TCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV--NR 407 (479)
Q Consensus 330 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~--~~ 407 (479)
.+||.|++|.+++|..++|.|+..+..-.. ....|+.+.+++|+.+++..+.++.. |++|+.+++.+|. ..
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c-----~~~~l~~lEL~n~p~i~d~~Le~l~~--c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSC-----SLEGLEVLELDNCPLITDATLEHLSI--CRNLERIELIDCQDVTK 441 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccc-----cccccceeeecCCCCchHHHHHHHhh--Ccccceeeeechhhhhh
Confidence 999999999999999999998888766333 57889999999999999999999987 9999999999987 67
Q ss_pred HHHHHHHhcCCCceeeccCcc
Q 011699 408 DILDALARSRPFLNVACRGEE 428 (479)
Q Consensus 408 ~~~~~~~~~~p~l~~~~~~~~ 428 (479)
+.+.++....|.+++......
T Consensus 442 ~~i~~~~~~lp~i~v~a~~a~ 462 (483)
T KOG4341|consen 442 EAISRFATHLPNIKVHAYFAP 462 (483)
T ss_pred hhhHHHHhhCccceehhhccC
Confidence 788999999999987665543
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.95 E-value=6.9e-28 Score=216.26 Aligned_cols=317 Identities=24% Similarity=0.388 Sum_probs=287.2
Q ss_pred CCCCcEEEeec-CccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhh-cCCCccEEecccccccccccc
Q 011699 58 LPGIQKLCLSV-DYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQIN-QHGKLKHLSLIRSQEFLITYF 135 (479)
Q Consensus 58 ~~~L~~L~L~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~~~~~ 135 (479)
...||.|.+++ ..+.+..+..+...||++++|.+.+|. ++|+..+..+. .|++|++|++.. |
T Consensus 137 gg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~--------~iTd~s~~sla~~C~~l~~l~L~~--------c 200 (483)
T KOG4341|consen 137 GGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK--------KITDSSLLSLARYCRKLRHLNLHS--------C 200 (483)
T ss_pred ccccccccccccccCCcchhhHHhhhCCchhhhhhhcce--------eccHHHHHHHHHhcchhhhhhhcc--------c
Confidence 35789999996 578889999999999999999999995 68888888887 899999999964 6
Q ss_pred cccchHHHHHHHHhCCCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCC
Q 011699 136 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNL 215 (479)
Q Consensus 136 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 215 (479)
..+++..++.++..|++|+.|++++|+.+...++..+.+++..++.+...||.......+..+...++-+.++++..|..
T Consensus 201 ~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~ 280 (483)
T KOG4341|consen 201 SSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQ 280 (483)
T ss_pred chhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcc
Confidence 88999999999999999999999999999998899999999999999888999999998888888998999999999999
Q ss_pred CCHHHHHHhh-CCCCCCEEecCCCCCCChHHHHhhh-cCCCCcEEEccCC-CCchHHHHHHHhhcCCCccEEecCCCCCC
Q 011699 216 LTNHAIKSLA-SNTGIKVLDLRDCKNLGDEALRAIS-SLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGCKRL 292 (479)
Q Consensus 216 ~~~~~~~~l~-~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~-~l~~~~l~~l~~~~~~~L~~L~l~~~~~l 292 (479)
+++.....+. .+..|+.|..++|..+++..+..++ ++++|+.|-+..| .+++.++..++. .++.|+.+++.+|..+
T Consensus 281 lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r-n~~~Le~l~~e~~~~~ 359 (483)
T KOG4341|consen 281 LTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR-NCPHLERLDLEECGLI 359 (483)
T ss_pred ccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc-CChhhhhhccccccee
Confidence 9999877766 7889999999999999999888887 7899999999998 699999999999 9999999999999988
Q ss_pred CHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHh---cCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCc
Q 011699 293 TDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLAT---CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSI 369 (479)
Q Consensus 293 ~~~~~~~l~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L 369 (479)
++..+..++..| +.|+.+.++.|..++++++..+.. ....|+.+.+++|+.+++..+..+.. |++|
T Consensus 360 ~d~tL~sls~~C--~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~---------c~~L 428 (483)
T KOG4341|consen 360 TDGTLASLSRNC--PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI---------CRNL 428 (483)
T ss_pred hhhhHhhhccCC--chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh---------Cccc
Confidence 888899999988 999999999999999998886643 45789999999999999999998885 9999
Q ss_pred cEEEccCCCCCCHHHHHHhhccCCCCccEEEecC
Q 011699 370 RLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTG 403 (479)
Q Consensus 370 ~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~ 403 (479)
+.+++-+|..++..++..+.. .+|+++...+..
T Consensus 429 eri~l~~~q~vtk~~i~~~~~-~lp~i~v~a~~a 461 (483)
T KOG4341|consen 429 ERIELIDCQDVTKEAISRFAT-HLPNIKVHAYFA 461 (483)
T ss_pred ceeeeechhhhhhhhhHHHHh-hCccceehhhcc
Confidence 999999999999999999987 899998877654
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=7.7e-22 Score=184.43 Aligned_cols=297 Identities=19% Similarity=0.190 Sum_probs=174.5
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccc
Q 011699 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 137 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 137 (479)
..+|+.|+|..|.|+...-+.+. .+|.|++|||+.|. ++....+.+..-.++++|+++. +.
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~-~l~alrslDLSrN~---------is~i~~~sfp~~~ni~~L~La~---------N~ 184 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELS-ALPALRSLDLSRNL---------ISEIPKPSFPAKVNIKKLNLAS---------NR 184 (873)
T ss_pred ccceeEEeeeccccccccHHHHH-hHhhhhhhhhhhch---------hhcccCCCCCCCCCceEEeecc---------cc
Confidence 56899999998888776666664 78999999999874 3333333444556788998874 34
Q ss_pred cchHHHHHHHHhCCCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCC
Q 011699 138 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 217 (479)
Q Consensus 138 ~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 217 (479)
|+.-....+ ..+.+|..|.|+. ++++....+.+ +.+++|+.|++..+..--..+ .-++.+++|+.|.|.. +.+.
T Consensus 185 It~l~~~~F-~~lnsL~tlkLsr-NrittLp~r~F-k~L~~L~~LdLnrN~irive~--ltFqgL~Sl~nlklqr-N~I~ 258 (873)
T KOG4194|consen 185 ITTLETGHF-DSLNSLLTLKLSR-NRITTLPQRSF-KRLPKLESLDLNRNRIRIVEG--LTFQGLPSLQNLKLQR-NDIS 258 (873)
T ss_pred ccccccccc-cccchheeeeccc-CcccccCHHHh-hhcchhhhhhccccceeeehh--hhhcCchhhhhhhhhh-cCcc
Confidence 443333333 2356788888888 57776644443 668888888887665311111 1234566777777665 3443
Q ss_pred HHHHHHhhCCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCC---H
Q 011699 218 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT---D 294 (479)
Q Consensus 218 ~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~---~ 294 (479)
...-..+-.+.++++|++.. +.+....-..+-++++|+.|++++|.|.......+.. +++|+.|+++.+ .++ .
T Consensus 259 kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf--tqkL~~LdLs~N-~i~~l~~ 334 (873)
T KOG4194|consen 259 KLDDGAFYGLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF--TQKLKELDLSSN-RITRLDE 334 (873)
T ss_pred cccCcceeeecccceeeccc-chhhhhhcccccccchhhhhccchhhhheeecchhhh--cccceeEecccc-ccccCCh
Confidence 33333344566777777765 3454444444556667777777777665555555554 667777777662 233 3
Q ss_pred HHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEecCCCCCCC----HHHHHHHHhccccCCCCCCCCcc
Q 011699 295 KCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIG----DTSVIALASMLVDDDRWYGSSIR 370 (479)
Q Consensus 295 ~~~~~l~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~----~~~~~~l~~~~~~~~~~~~~~L~ 370 (479)
..+..+ ..|++|.|+. +.++...-.++ ..+.+|++|++++| .+. | +...+ . .+++|+
T Consensus 335 ~sf~~L------~~Le~LnLs~-Nsi~~l~e~af-~~lssL~~LdLr~N-~ls~~IED-aa~~f-~--------gl~~Lr 395 (873)
T KOG4194|consen 335 GSFRVL------SQLEELNLSH-NSIDHLAEGAF-VGLSSLHKLDLRSN-ELSWCIED-AAVAF-N--------GLPSLR 395 (873)
T ss_pred hHHHHH------HHhhhhcccc-cchHHHHhhHH-HHhhhhhhhcCcCC-eEEEEEec-chhhh-c--------cchhhh
Confidence 444444 5666666666 45443222222 24566666666666 322 2 11111 1 456666
Q ss_pred EEEccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011699 371 LLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 371 ~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
.|.+.+|+ +....-.++.. +++|++|++.+|.
T Consensus 396 kL~l~gNq-lk~I~krAfsg--l~~LE~LdL~~Na 427 (873)
T KOG4194|consen 396 KLRLTGNQ-LKSIPKRAFSG--LEALEHLDLGDNA 427 (873)
T ss_pred heeecCce-eeecchhhhcc--CcccceecCCCCc
Confidence 66666666 55555555544 6666666666664
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.79 E-value=6e-19 Score=191.11 Aligned_cols=205 Identities=20% Similarity=0.153 Sum_probs=96.7
Q ss_pred CCCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEeccccccccccccc
Q 011699 57 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFR 136 (479)
Q Consensus 57 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~ 136 (479)
.+++|++|+|+.+.+.......+ ..+++|++|++++|. ++......+..+++|++|+++++
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~---------l~~~~p~~~~~l~~L~~L~L~~n--------- 198 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNV---------LVGKIPNSLTNLTSLEFLTLASN--------- 198 (968)
T ss_pred ccCCCCEEECcCCcccccCChHH-hcCCCCCEEECccCc---------ccccCChhhhhCcCCCeeeccCC---------
Confidence 47778888888776664444444 367888888888774 22222234556667777777542
Q ss_pred ccchHHHHHHHHhCCCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCC
Q 011699 137 RVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLL 216 (479)
Q Consensus 137 ~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 216 (479)
.+.......+ ..+++|+.|+++++ .+....... +..+++|++|++++|..... +......+++|+.|+++++ .+
T Consensus 199 ~l~~~~p~~l-~~l~~L~~L~L~~n-~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n-~l 272 (968)
T PLN00113 199 QLVGQIPREL-GQMKSLKWIYLGYN-NLSGEIPYE-IGGLTSLNHLDLVYNNLTGP--IPSSLGNLKNLQYLFLYQN-KL 272 (968)
T ss_pred CCcCcCChHH-cCcCCccEEECcCC-ccCCcCChh-HhcCCCCCEEECcCceeccc--cChhHhCCCCCCEEECcCC-ee
Confidence 1111111111 33555666666553 333221222 23455666666655432110 1112234445555555553 22
Q ss_pred CHHHHHHhhCCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCC
Q 011699 217 TNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 289 (479)
Q Consensus 217 ~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~ 289 (479)
.......+..+++|+.|++++| .+.......+.++++|+.|++++|.+.......+.. +++|+.|++++|
T Consensus 273 ~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--l~~L~~L~L~~n 342 (968)
T PLN00113 273 SGPIPPSIFSLQKLISLDLSDN-SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS--LPRLQVLQLWSN 342 (968)
T ss_pred eccCchhHhhccCcCEEECcCC-eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhc--CCCCCEEECcCC
Confidence 2111122334555555555553 233222333444555555555555444332222222 455555555543
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.77 E-value=1.6e-18 Score=187.77 Aligned_cols=248 Identities=19% Similarity=0.103 Sum_probs=133.7
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccc
Q 011699 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 137 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 137 (479)
+++|++|+|+++.+...... ..+++|++|++++|. ++......++.+++|++|+++++ .
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~---------~~~~~p~~~~~l~~L~~L~L~~n---------~ 175 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNM---------LSGEIPNDIGSFSSLKVLDLGGN---------V 175 (968)
T ss_pred CCCCCEEECcCCccccccCc---cccCCCCEEECcCCc---------ccccCChHHhcCCCCCEEECccC---------c
Confidence 45666666665544332111 135566666666653 22222334566777777777542 1
Q ss_pred cchHHHHHHHHhCCCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCC
Q 011699 138 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 217 (479)
Q Consensus 138 ~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 217 (479)
+.......+ ..+++|+.|++++| .+....... ...+++|+.|+++++..... +......+++|++|++++| .+.
T Consensus 176 l~~~~p~~~-~~l~~L~~L~L~~n-~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n-~l~ 249 (968)
T PLN00113 176 LVGKIPNSL-TNLTSLEFLTLASN-QLVGQIPRE-LGQMKSLKWIYLGYNNLSGE--IPYEIGGLTSLNHLDLVYN-NLT 249 (968)
T ss_pred ccccCChhh-hhCcCCCeeeccCC-CCcCcCChH-HcCcCCccEEECcCCccCCc--CChhHhcCCCCCEEECcCc-eec
Confidence 111111112 34677777777774 443322222 24567777777776543211 1112345667788887774 333
Q ss_pred HHHHHHhhCCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCC--HH
Q 011699 218 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT--DK 295 (479)
Q Consensus 218 ~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~--~~ 295 (479)
......+..+++|+.|++++| .+.......+..+++|+.|++++|.+.......+.. +++|+.|+++++.... ..
T Consensus 250 ~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~--l~~L~~L~l~~n~~~~~~~~ 326 (968)
T PLN00113 250 GPIPSSLGNLKNLQYLFLYQN-KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ--LQNLEILHLFSNNFTGKIPV 326 (968)
T ss_pred cccChhHhCCCCCCEEECcCC-eeeccCchhHhhccCcCEEECcCCeeccCCChhHcC--CCCCcEEECCCCccCCcCCh
Confidence 333334567777888887774 444434445567778888888877665443333333 7788888887754221 12
Q ss_pred HHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEecCCC
Q 011699 296 CISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQC 343 (479)
Q Consensus 296 ~~~~l~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 343 (479)
.+.. +++|+.|++++| .+.......+ ..+++|+.|++++|
T Consensus 327 ~~~~------l~~L~~L~L~~n-~l~~~~p~~l-~~~~~L~~L~Ls~n 366 (968)
T PLN00113 327 ALTS------LPRLQVLQLWSN-KFSGEIPKNL-GKHNNLTVLDLSTN 366 (968)
T ss_pred hHhc------CCCCCEEECcCC-CCcCcCChHH-hCCCCCcEEECCCC
Confidence 2222 267788888774 4432211112 24667777777766
No 6
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=2.7e-16 Score=148.65 Aligned_cols=167 Identities=26% Similarity=0.249 Sum_probs=86.8
Q ss_pred CCCCEEecCCCCCCChHHH----HhhhcCCCCcEEEccCCCCchHHHHHHHh--hcCCCccEEecCCCCCCCHHHHHHHh
Q 011699 228 TGIKVLDLRDCKNLGDEAL----RAISSLPQLKILLLDGSDISDVGVSYLRL--TVITSLVKLSLRGCKRLTDKCISALF 301 (479)
Q Consensus 228 ~~L~~L~l~~~~~l~~~~~----~~l~~l~~L~~L~l~~~~l~~~~l~~l~~--~~~~~L~~L~l~~~~~l~~~~~~~l~ 301 (479)
++|+.|++++| .++.... ..+..+++|+.|++++|.+++.++..+.. ..+++|++|++++| .+++.+...+.
T Consensus 137 ~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~ 214 (319)
T cd00116 137 PALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALA 214 (319)
T ss_pred CCceEEEcCCC-cCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHH
Confidence 55666666554 3332221 22334556666666666665544443332 02346666666664 34444333322
Q ss_pred cc-CCCCCccEEecCCCCCCCHHHHHHHHhcC----CCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccC
Q 011699 302 DG-TSKLQLQELDLSNLPHLSDNGILTLATCR----VPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYN 376 (479)
Q Consensus 302 ~~-~~~~~L~~L~L~~~~~i~~~~~~~l~~~~----~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 376 (479)
.. ..+++|++|++++| .+++.++..+...+ +.|+.|++.+| .+++.+...+..... .+++|+.+++++
T Consensus 215 ~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~-----~~~~L~~l~l~~ 287 (319)
T cd00116 215 ETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLA-----EKESLLELDLRG 287 (319)
T ss_pred HHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHh-----cCCCccEEECCC
Confidence 11 11266777777764 56655555554443 56777777776 666555555544333 356677777777
Q ss_pred CCCCCHHHHHHhhcc--CC-CCccEEEecCC
Q 011699 377 CGGITQLAFRWLKKP--YF-PRLRWLGVTGS 404 (479)
Q Consensus 377 c~~i~~~~~~~l~~~--~~-~~L~~L~l~~~ 404 (479)
|. +++.+...+... .. +.|+.+++.++
T Consensus 288 N~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 288 NK-FGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred CC-CcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 76 665544333320 12 46666666554
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.76 E-value=1.8e-20 Score=175.35 Aligned_cols=342 Identities=18% Similarity=0.185 Sum_probs=221.2
Q ss_pred cccchhhHHHHHHhhhccceeecccccchhhhhccCC-------CCCCCCC--CCccCCCCCCCCcEEEeecCccChhHH
Q 011699 6 LFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSP-------NVEPHQS--PNQIRPSILPGIQKLCLSVDYITDAMV 76 (479)
Q Consensus 6 ~~~~~~~~~~~~~~p~~l~~L~l~~~~~~~~~~~~~~-------~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~~ 76 (479)
++.+-++. +|..+| +|+.+.+.+.-...++.+... .+.+... -.......++.|++|||+.|.+.....
T Consensus 89 kl~~id~~-~f~nl~-nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~ 166 (873)
T KOG4194|consen 89 KLSHIDFE-FFYNLP-NLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPK 166 (873)
T ss_pred ccccCcHH-HHhcCC-cceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccC
Confidence 45555655 667788 999999884322222222110 0000000 001123348999999999888776444
Q ss_pred HHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccccchHHHHHHHHhCCCCCEE
Q 011699 77 GTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESI 156 (479)
Q Consensus 77 ~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L 156 (479)
..+. .-+++++|+|++|. |+......+..+.+|..|.+++ +....++...+ +++++|+.|
T Consensus 167 ~sfp-~~~ni~~L~La~N~---------It~l~~~~F~~lnsL~tlkLsr------NrittLp~r~F----k~L~~L~~L 226 (873)
T KOG4194|consen 167 PSFP-AKVNIKKLNLASNR---------ITTLETGHFDSLNSLLTLKLSR------NRITTLPQRSF----KRLPKLESL 226 (873)
T ss_pred CCCC-CCCCceEEeecccc---------ccccccccccccchheeeeccc------CcccccCHHHh----hhcchhhhh
Confidence 3332 45689999999984 6666666777778999999976 23334443333 568899999
Q ss_pred EEcCCcccCHHHHHHHHHhCCCCceEEecCCCC--CCHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHhhCCCCCCEEe
Q 011699 157 CLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQ--LTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLD 234 (479)
Q Consensus 157 ~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 234 (479)
+|.. +.+.....-. ++++++|+.|.+..+.. +.+. .+..+.++++|+|.. +.+....-..+..+++|+.|+
T Consensus 227 dLnr-N~irive~lt-FqgL~Sl~nlklqrN~I~kL~DG----~Fy~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~ 299 (873)
T KOG4194|consen 227 DLNR-NRIRIVEGLT-FQGLPSLQNLKLQRNDISKLDDG----AFYGLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLD 299 (873)
T ss_pred hccc-cceeeehhhh-hcCchhhhhhhhhhcCcccccCc----ceeeecccceeeccc-chhhhhhcccccccchhhhhc
Confidence 9988 5654332222 36788999998887653 3332 233677999999988 566655555566889999999
Q ss_pred cCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCH---HHHHHHhccCCCCCccE
Q 011699 235 LRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD---KCISALFDGTSKLQLQE 311 (479)
Q Consensus 235 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~---~~~~~l~~~~~~~~L~~ 311 (479)
+|. +.+..........+++|+.|+|++|.++.-.-..+.. +..|+.|+++++ .+.. ..+..+ ++|++
T Consensus 300 lS~-NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~--L~~Le~LnLs~N-si~~l~e~af~~l------ssL~~ 369 (873)
T KOG4194|consen 300 LSY-NAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV--LSQLEELNLSHN-SIDHLAEGAFVGL------SSLHK 369 (873)
T ss_pred cch-hhhheeecchhhhcccceeEeccccccccCChhHHHH--HHHhhhhccccc-chHHHHhhHHHHh------hhhhh
Confidence 988 4666666666678899999999998766544444443 677999999883 3442 233333 78999
Q ss_pred EecCCCCCCC---HHHHHHHHhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccCCCCCCHHHHHHh
Q 011699 312 LDLSNLPHLS---DNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWL 388 (479)
Q Consensus 312 L~L~~~~~i~---~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l 388 (479)
|+|++ +.++ .++ ...+.++++|++|.+.+| ++....-.++. ++++|+.|++.+|. |......++
T Consensus 370 LdLr~-N~ls~~IEDa-a~~f~gl~~LrkL~l~gN-qlk~I~krAfs---------gl~~LE~LdL~~Na-iaSIq~nAF 436 (873)
T KOG4194|consen 370 LDLRS-NELSWCIEDA-AVAFNGLPSLRKLRLTGN-QLKSIPKRAFS---------GLEALEHLDLGDNA-IASIQPNAF 436 (873)
T ss_pred hcCcC-CeEEEEEecc-hhhhccchhhhheeecCc-eeeecchhhhc---------cCcccceecCCCCc-ceeeccccc
Confidence 99988 5554 222 233446899999999998 65554444444 58889999999887 544333444
Q ss_pred hccCCCCccEEEec
Q 011699 389 KKPYFPRLRWLGVT 402 (479)
Q Consensus 389 ~~~~~~~L~~L~l~ 402 (479)
.. + .|++|.+.
T Consensus 437 e~--m-~Lk~Lv~n 447 (873)
T KOG4194|consen 437 EP--M-ELKELVMN 447 (873)
T ss_pred cc--c-hhhhhhhc
Confidence 32 2 56666554
No 8
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=6.1e-17 Score=139.97 Aligned_cols=254 Identities=19% Similarity=0.253 Sum_probs=187.8
Q ss_pred CEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHH-HHHhcCCCccEEEcCCCCCCCHHHHHH-hhCCCCCC
Q 011699 154 ESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFH-DISATSLSLTHVCLRWCNLLTNHAIKS-LASNTGIK 231 (479)
Q Consensus 154 ~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~ 231 (479)
+.+++.+ ..+.......+.+ .....+.+.... +.+..+. .+.-.-..|++|+++. ..++...+.. +.+|.+|+
T Consensus 139 ~~lDl~~-r~i~p~~l~~l~~--rgV~v~Rlar~~-~~~prlae~~~~frsRlq~lDLS~-s~it~stl~~iLs~C~kLk 213 (419)
T KOG2120|consen 139 QTLDLTG-RNIHPDVLGRLLS--RGVIVFRLARSF-MDQPRLAEHFSPFRSRLQHLDLSN-SVITVSTLHGILSQCSKLK 213 (419)
T ss_pred eeeccCC-CccChhHHHHHHh--CCeEEEEcchhh-hcCchhhhhhhhhhhhhHHhhcch-hheeHHHHHHHHHHHHhhh
Confidence 4566666 4555544444432 344444443211 1111111 1112234688899988 5666555443 55899999
Q ss_pred EEecCCCCCCChHHHHhhhcCCCCcEEEccCC-CCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCcc
Q 011699 232 VLDLRDCKNLGDEALRAISSLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQ 310 (479)
Q Consensus 232 ~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~-~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~ 310 (479)
.|++.| ..+.+.....++...+|++|+++.| .++..++..+.. +|..|..|++++|...++. +..+... ..++|+
T Consensus 214 ~lSlEg-~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~-scs~L~~LNlsWc~l~~~~-Vtv~V~h-ise~l~ 289 (419)
T KOG2120|consen 214 NLSLEG-LRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLS-SCSRLDELNLSWCFLFTEK-VTVAVAH-ISETLT 289 (419)
T ss_pred hccccc-cccCcHHHHHHhccccceeeccccccccchhHHHHHHH-hhhhHhhcCchHhhccchh-hhHHHhh-hchhhh
Confidence 999988 4788888888888899999999987 788888888888 8999999999999766554 3332222 128999
Q ss_pred EEecCCC-CCCCHHHHHHHHhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccCCCCCCHHHHHHhh
Q 011699 311 ELDLSNL-PHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLK 389 (479)
Q Consensus 311 ~L~L~~~-~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~ 389 (479)
.|++++| .++....+..+...||+|..|+++.|..+++..+..+.+ ++.|++|.++.|..+....+..+.
T Consensus 290 ~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k---------f~~L~~lSlsRCY~i~p~~~~~l~ 360 (419)
T KOG2120|consen 290 QLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK---------FNYLQHLSLSRCYDIIPETLLELN 360 (419)
T ss_pred hhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh---------cchheeeehhhhcCCChHHeeeec
Confidence 9999998 345566788888999999999999998899866666664 899999999999988887777776
Q ss_pred ccCCCCccEEEecCCCCHHHHHHHHhcCCCceeeccCc
Q 011699 390 KPYFPRLRWLGVTGSVNRDILDALARSRPFLNVACRGE 427 (479)
Q Consensus 390 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~l~~~~~~~ 427 (479)
. .|+|.+|++.||......+-+.+..|++++.+...
T Consensus 361 s--~psl~yLdv~g~vsdt~mel~~e~~~~lkin~q~~ 396 (419)
T KOG2120|consen 361 S--KPSLVYLDVFGCVSDTTMELLKEMLSHLKINCQHF 396 (419)
T ss_pred c--CcceEEEEeccccCchHHHHHHHhCccccccceee
Confidence 5 89999999999998889999999999998877653
No 9
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.8e-17 Score=143.18 Aligned_cols=250 Identities=22% Similarity=0.276 Sum_probs=159.2
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHH-hhh-cCCCccEEecccccccccccc
Q 011699 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQ-QIN-QHGKLKHLSLIRSQEFLITYF 135 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~-~l~-~~~~L~~L~l~~~~~~~~~~~ 135 (479)
-...+.+|+.+..+....+..+.+ .....+.+... .+.+..+. .+. .-..|++|++++
T Consensus 135 e~lW~~lDl~~r~i~p~~l~~l~~--rgV~v~Rlar~---------~~~~prlae~~~~frsRlq~lDLS~--------- 194 (419)
T KOG2120|consen 135 ESLWQTLDLTGRNIHPDVLGRLLS--RGVIVFRLARS---------FMDQPRLAEHFSPFRSRLQHLDLSN--------- 194 (419)
T ss_pred ccceeeeccCCCccChhHHHHHHh--CCeEEEEcchh---------hhcCchhhhhhhhhhhhhHHhhcch---------
Confidence 346678888888888887877764 34555555542 12222122 111 123589999974
Q ss_pred cccchHHHHHHHHhCCCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCC
Q 011699 136 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNL 215 (479)
Q Consensus 136 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 215 (479)
..++...+..+.+.|++|+.|.+.+ ..+.+.....++ .-.+|+.|+++.+..++..++..+...|..|.+|++++|..
T Consensus 195 s~it~stl~~iLs~C~kLk~lSlEg-~~LdD~I~~~iA-kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 195 SVITVSTLHGILSQCSKLKNLSLEG-LRLDDPIVNTIA-KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFL 272 (419)
T ss_pred hheeHHHHHHHHHHHHhhhhccccc-cccCcHHHHHHh-ccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhc
Confidence 6788888888888899999999999 688887666654 47789999999999999999998999999999999999876
Q ss_pred CCHHHHHHhh-CCCCCCEEecCCCCC-CChHHHHhhh-cCCCCcEEEccCC-CCchHHHHHHHhhcCCCccEEecCCCCC
Q 011699 216 LTNHAIKSLA-SNTGIKVLDLRDCKN-LGDEALRAIS-SLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGCKR 291 (479)
Q Consensus 216 ~~~~~~~~l~-~~~~L~~L~l~~~~~-l~~~~~~~l~-~l~~L~~L~l~~~-~l~~~~l~~l~~~~~~~L~~L~l~~~~~ 291 (479)
.++..-..++ --++|+.|+++||.. +....+..+. ++|+|..|++++| .+++..+..+.+ ++-|++|.++.|..
T Consensus 273 ~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k--f~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 273 FTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK--FNYLQHLSLSRCYD 350 (419)
T ss_pred cchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh--cchheeeehhhhcC
Confidence 6655333333 246778888887643 2223333332 5666666666655 455544454544 56666666666655
Q ss_pred CCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCC
Q 011699 292 LTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPIS 336 (479)
Q Consensus 292 l~~~~~~~l~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~~~~~L~ 336 (479)
+.++.+..+. ..|.|.+|++.+| +++..+..+...+++|+
T Consensus 351 i~p~~~~~l~---s~psl~yLdv~g~--vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 351 IIPETLLELN---SKPSLVYLDVFGC--VSDTTMELLKEMLSHLK 390 (419)
T ss_pred CChHHeeeec---cCcceEEEEeccc--cCchHHHHHHHhCcccc
Confidence 5554444332 2255566655553 34444444444444443
No 10
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.67 E-value=4.9e-16 Score=137.53 Aligned_cols=256 Identities=23% Similarity=0.311 Sum_probs=161.7
Q ss_pred CCCCCEEEEcCCcccCHHHHHHHHHhC---CCCceEEecCCCC--CCHH------HHHHHHhcCCCccEEEcCCCCCCCH
Q 011699 150 CASMESICLGGFCRVTDTGFKTILHSC---SNLYKLRVSHGTQ--LTDL------VFHDISATSLSLTHVCLRWCNLLTN 218 (479)
Q Consensus 150 ~~~L~~L~l~~~~~l~~~~~~~l~~~~---~~L~~L~l~~~~~--~~~~------~~~~~~~~~~~L~~L~l~~~~~~~~ 218 (479)
...++.+++++ +.++....+.+...+ ++|+..++++... ..+. .+......+|+|+.|+|+. +-++.
T Consensus 29 ~~s~~~l~lsg-nt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD-NA~G~ 106 (382)
T KOG1909|consen 29 MDSLTKLDLSG-NTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD-NAFGP 106 (382)
T ss_pred cCceEEEeccC-CchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc-cccCc
Confidence 45566666666 455555444444333 3344444432211 0011 0111223456777777776 45555
Q ss_pred HHHHHh----hCCCCCCEEecCCCCCCChHHHHhh-------------hcCCCCcEEEccCCCCchHHHHHHHh--hcCC
Q 011699 219 HAIKSL----ASNTGIKVLDLRDCKNLGDEALRAI-------------SSLPQLKILLLDGSDISDVGVSYLRL--TVIT 279 (479)
Q Consensus 219 ~~~~~l----~~~~~L~~L~l~~~~~l~~~~~~~l-------------~~l~~L~~L~l~~~~l~~~~l~~l~~--~~~~ 279 (479)
.++..+ .++..|++|.+.+| .++..+-..+ +.-++|+.+....|.+.+.+...+.. ..++
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 444433 36677777777665 5554433322 24578888888888777766544433 2567
Q ss_pred CccEEecCCCCCCCHHHHHHH---hccCCCCCccEEecCCCCCCCHHHHHHHH---hcCCCCCEEecCCCCCCCHHHHHH
Q 011699 280 SLVKLSLRGCKRLTDKCISAL---FDGTSKLQLQELDLSNLPHLSDNGILTLA---TCRVPISELRVRQCPLIGDTSVIA 353 (479)
Q Consensus 280 ~L~~L~l~~~~~l~~~~~~~l---~~~~~~~~L~~L~L~~~~~i~~~~~~~l~---~~~~~L~~L~l~~~~~l~~~~~~~ 353 (479)
.|+.+.+.. +.+..+++..+ +..| ++|+.|+|.. +.++..+-.+++ ..+++|+.|+++.| .+.+.|..+
T Consensus 186 ~leevr~~q-N~I~~eG~~al~eal~~~--~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a 260 (382)
T KOG1909|consen 186 TLEEVRLSQ-NGIRPEGVTALAEALEHC--PHLEVLDLRD-NTFTLEGSVALAKALSSWPHLRELNLGDC-LLENEGAIA 260 (382)
T ss_pred ccceEEEec-ccccCchhHHHHHHHHhC--Ccceeeeccc-chhhhHHHHHHHHHhcccchheeeccccc-ccccccHHH
Confidence 888888877 44665555333 2345 8999999998 677766655443 45678999999999 888888888
Q ss_pred HHhccccCCCCCCCCccEEEccCCCCCCHHHHHHhhc--cCCCCccEEEecCCC---CHHHHHHHHhcCC
Q 011699 354 LASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK--PYFPRLRWLGVTGSV---NRDILDALARSRP 418 (479)
Q Consensus 354 l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~--~~~~~L~~L~l~~~~---~~~~~~~~~~~~p 418 (479)
+..++.. ..|+|+.|.+.+|. |+..+...+.. +.-|.|+.|++.+|. ....+..++..++
T Consensus 261 ~~~al~~----~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~~~~~ 325 (382)
T KOG1909|consen 261 FVDALKE----SAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIASKFD 325 (382)
T ss_pred HHHHHhc----cCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHHHHhcc
Confidence 8887766 68899999999998 88877665543 237899999999997 3455666665554
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.67 E-value=2.2e-14 Score=135.62 Aligned_cols=259 Identities=23% Similarity=0.218 Sum_probs=173.5
Q ss_pred cccchHHHHHHHHhCCCCCEEEEcCCcccCHHHHHH---HHHhCCCCceEEecCCCCCC-HHHH---HHHHhcCCCccEE
Q 011699 136 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKT---ILHSCSNLYKLRVSHGTQLT-DLVF---HDISATSLSLTHV 208 (479)
Q Consensus 136 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~---l~~~~~~L~~L~l~~~~~~~-~~~~---~~~~~~~~~L~~L 208 (479)
..++......+...+++|+.|++++| .+++.+... .....++|++|+++++.... ...+ ......+++|++|
T Consensus 8 ~~l~~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L 86 (319)
T cd00116 8 ELLKTERATELLPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQEL 86 (319)
T ss_pred CcccccchHHHHHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEE
Confidence 34443334444455677999999985 665544333 34456778999888765321 2222 2233457799999
Q ss_pred EcCCCCCCCHHHHHHhhCC---CCCCEEecCCCCCCChHHHH----hhhcC-CCCcEEEccCCCCchHHHHHHHh--hcC
Q 011699 209 CLRWCNLLTNHAIKSLASN---TGIKVLDLRDCKNLGDEALR----AISSL-PQLKILLLDGSDISDVGVSYLRL--TVI 278 (479)
Q Consensus 209 ~l~~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~l~~~~~~----~l~~l-~~L~~L~l~~~~l~~~~l~~l~~--~~~ 278 (479)
++++|. +.......+..+ ++|++|++++| .+.+.+.. .+..+ ++|+.|++++|.++..+...+.. ..+
T Consensus 87 ~l~~~~-~~~~~~~~~~~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 164 (319)
T cd00116 87 DLSDNA-LGPDGCGVLESLLRSSSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRAN 164 (319)
T ss_pred EccCCC-CChhHHHHHHHHhccCcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhC
Confidence 999964 332233333333 55999999986 56654443 34466 89999999999988554443332 146
Q ss_pred CCccEEecCCCCCCCHHHHHHHhccC-CCCCccEEecCCCCCCCHHHHHHH---HhcCCCCCEEecCCCCCCCHHHHHHH
Q 011699 279 TSLVKLSLRGCKRLTDKCISALFDGT-SKLQLQELDLSNLPHLSDNGILTL---ATCRVPISELRVRQCPLIGDTSVIAL 354 (479)
Q Consensus 279 ~~L~~L~l~~~~~l~~~~~~~l~~~~-~~~~L~~L~L~~~~~i~~~~~~~l---~~~~~~L~~L~l~~~~~l~~~~~~~l 354 (479)
++|++|++++| .+++.++..++... .+++|++|++++| .+++.+...+ ...+++|++|++++| .+++.++..+
T Consensus 165 ~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l 241 (319)
T cd00116 165 RDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAAL 241 (319)
T ss_pred CCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHH
Confidence 78999999996 46665555443221 2269999999996 7776665543 345789999999999 7898888887
Q ss_pred HhccccCCCCCCCCccEEEccCCCCCCHHHHHHhhc--cCCCCccEEEecCCC
Q 011699 355 ASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK--PYFPRLRWLGVTGSV 405 (479)
Q Consensus 355 ~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~--~~~~~L~~L~l~~~~ 405 (479)
+..... ..+.|+.|++++|. +++.+...+.. +.+++|+.+++++|.
T Consensus 242 ~~~~~~----~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 242 ASALLS----PNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHhc----cCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 763321 24799999999998 87655544433 246899999999987
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.61 E-value=3.3e-15 Score=162.57 Aligned_cols=125 Identities=14% Similarity=0.177 Sum_probs=62.7
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccc
Q 011699 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 137 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 137 (479)
+.+|+.|++..+.+..- ... ...+++|+.|+|+++..+. .++.+..+++|++|++.+|. .
T Consensus 610 ~~~L~~L~L~~s~l~~L-~~~-~~~l~~Lk~L~Ls~~~~l~----------~ip~ls~l~~Le~L~L~~c~--------~ 669 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKL-WDG-VHSLTGLRNIDLRGSKNLK----------EIPDLSMATNLETLKLSDCS--------S 669 (1153)
T ss_pred ccCCcEEECcCcccccc-ccc-cccCCCCCEEECCCCCCcC----------cCCccccCCcccEEEecCCC--------C
Confidence 45677777776554431 111 2356777777777664321 12234556677777775431 1
Q ss_pred cchHHHHHHHHhCCCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCC
Q 011699 138 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRW 212 (479)
Q Consensus 138 ~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 212 (479)
+.. +......+++|+.|++++|..+..... . ..+++|+.|++++|..+... .....+|+.|++.+
T Consensus 670 L~~--lp~si~~L~~L~~L~L~~c~~L~~Lp~-~--i~l~sL~~L~Lsgc~~L~~~-----p~~~~nL~~L~L~~ 734 (1153)
T PLN03210 670 LVE--LPSSIQYLNKLEDLDMSRCENLEILPT-G--INLKSLYRLNLSGCSRLKSF-----PDISTNISWLDLDE 734 (1153)
T ss_pred ccc--cchhhhccCCCCEEeCCCCCCcCccCC-c--CCCCCCCEEeCCCCCCcccc-----ccccCCcCeeecCC
Confidence 111 111123466677777777655543211 1 14566777777666543221 11233555555555
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.58 E-value=2.8e-17 Score=155.50 Aligned_cols=338 Identities=19% Similarity=0.184 Sum_probs=154.6
Q ss_pred cccccchhhHHHHHHhhhccceeecccccchhhhhccCCCCCCCCCCCccCCCCCCCCcEEEeecCccChhHHHHHHHcC
Q 011699 4 ISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGL 83 (479)
Q Consensus 4 ~~~~~~~~~~~~~~~~p~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 83 (479)
+-+|+...|..-.+.+. .++.|.+.......++.- ...+.+|++|.+..|.+.. ....+ ..+
T Consensus 16 gNDFsg~~FP~~v~qMt-~~~WLkLnrt~L~~vPeE---------------L~~lqkLEHLs~~HN~L~~-vhGEL-s~L 77 (1255)
T KOG0444|consen 16 GNDFSGDRFPHDVEQMT-QMTWLKLNRTKLEQVPEE---------------LSRLQKLEHLSMAHNQLIS-VHGEL-SDL 77 (1255)
T ss_pred CCcCCCCcCchhHHHhh-heeEEEechhhhhhChHH---------------HHHHhhhhhhhhhhhhhHh-hhhhh-ccc
Confidence 33444444444455555 677777764332222222 2335667777666555432 12222 256
Q ss_pred CCccEEeccCCCCCCCccccccchHHHH-hhhcCCCccEEecccccccccccccccchHHHHHHHHhCCCCCEEEEcCCc
Q 011699 84 VSLTHLDLRDAPLIEPRITFDLTNSGLQ-QINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFC 162 (479)
Q Consensus 84 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 162 (479)
|.|+.++++.|+ +...+++ .|..+..|+.|++++++ +..++ ..+ ...+++-.|+|++ +
T Consensus 78 p~LRsv~~R~N~---------LKnsGiP~diF~l~dLt~lDLShNq------L~EvP-~~L----E~AKn~iVLNLS~-N 136 (1255)
T KOG0444|consen 78 PRLRSVIVRDNN---------LKNSGIPTDIFRLKDLTILDLSHNQ------LREVP-TNL----EYAKNSIVLNLSY-N 136 (1255)
T ss_pred hhhHHHhhhccc---------cccCCCCchhcccccceeeecchhh------hhhcc-hhh----hhhcCcEEEEccc-C
Confidence 677777776653 3333333 45566666666665421 11111 011 1234455556655 3
Q ss_pred ccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHhhCCCCCCEEecCCCCCCC
Q 011699 163 RVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLG 242 (479)
Q Consensus 163 ~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 242 (479)
++... +..++-++..|-.|+++++.. ..+..-.+.+..|+.|.|++ +.+....+..+..+++|+.|.+++.....
T Consensus 137 ~IetI-Pn~lfinLtDLLfLDLS~NrL---e~LPPQ~RRL~~LqtL~Ls~-NPL~hfQLrQLPsmtsL~vLhms~TqRTl 211 (1255)
T KOG0444|consen 137 NIETI-PNSLFINLTDLLFLDLSNNRL---EMLPPQIRRLSMLQTLKLSN-NPLNHFQLRQLPSMTSLSVLHMSNTQRTL 211 (1255)
T ss_pred ccccC-CchHHHhhHhHhhhccccchh---hhcCHHHHHHhhhhhhhcCC-ChhhHHHHhcCccchhhhhhhcccccchh
Confidence 44332 223333444555555554431 11111222334555555555 33333334444444455555555432222
Q ss_pred hHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCH--HHHHHH----------------h-cc
Q 011699 243 DEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD--KCISAL----------------F-DG 303 (479)
Q Consensus 243 ~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~--~~~~~l----------------~-~~ 303 (479)
+.....+..+.+|..++++.|.+.. ....+.. +++|+.|++++ +.++. .+...+ . ..
T Consensus 212 ~N~Ptsld~l~NL~dvDlS~N~Lp~-vPecly~--l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~av 287 (1255)
T KOG0444|consen 212 DNIPTSLDDLHNLRDVDLSENNLPI-VPECLYK--LRNLRRLNLSG-NKITELNMTEGEWENLETLNLSRNQLTVLPDAV 287 (1255)
T ss_pred hcCCCchhhhhhhhhccccccCCCc-chHHHhh--hhhhheeccCc-CceeeeeccHHHHhhhhhhccccchhccchHHH
Confidence 2222333344455555555554331 1112222 44555555554 22331 111122 0 00
Q ss_pred CCCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccCCCCCCHH
Q 011699 304 TSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQL 383 (479)
Q Consensus 304 ~~~~~L~~L~L~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~ 383 (479)
|++++|+.|.+.+ +.++-+++..-...+.+|+.+...+| .+. ...+.++ +|..|+.|.++.|..|+-.
T Consensus 288 cKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aanN-~LE-lVPEglc---------RC~kL~kL~L~~NrLiTLP 355 (1255)
T KOG0444|consen 288 CKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAANN-KLE-LVPEGLC---------RCVKLQKLKLDHNRLITLP 355 (1255)
T ss_pred hhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhcc-ccc-cCchhhh---------hhHHHHHhcccccceeech
Confidence 1224444444444 33332222111112334444444444 211 1112222 5899999999999877753
Q ss_pred HHHHhhccCCCCccEEEecCCC
Q 011699 384 AFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 384 ~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
...++ +|.|+.|++..|+
T Consensus 356 eaIHl----L~~l~vLDlreNp 373 (1255)
T KOG0444|consen 356 EAIHL----LPDLKVLDLRENP 373 (1255)
T ss_pred hhhhh----cCCcceeeccCCc
Confidence 33333 7899999999987
No 14
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.56 E-value=2.3e-14 Score=127.04 Aligned_cols=217 Identities=21% Similarity=0.256 Sum_probs=139.4
Q ss_pred hCCCCCEEEEcCCcccCHHH---HHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHhh
Q 011699 149 KCASMESICLGGFCRVTDTG---FKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLA 225 (479)
Q Consensus 149 ~~~~L~~L~l~~~~~l~~~~---~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 225 (479)
.+|+|+.|+||. +.++..+ +..+++.+..|++|.+.+|.. ...+-..+... |.+|.. ....+
T Consensus 90 ~~~~L~~ldLSD-NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl-g~~ag~~l~~a---l~~l~~----------~kk~~ 154 (382)
T KOG1909|consen 90 GCPKLQKLDLSD-NAFGPKGIRGLEELLSSCTDLEELYLNNCGL-GPEAGGRLGRA---LFELAV----------NKKAA 154 (382)
T ss_pred cCCceeEeeccc-cccCccchHHHHHHHHhccCHHHHhhhcCCC-ChhHHHHHHHH---HHHHHH----------HhccC
Confidence 466777777777 4555433 444556677777777776653 32222222221 111110 11223
Q ss_pred CCCCCCEEecCCCCCCChHHHHhh----hcCCCCcEEEccCCCCchHHHHHHHh--hcCCCccEEecCCCCCCCHHHHHH
Q 011699 226 SNTGIKVLDLRDCKNLGDEALRAI----SSLPQLKILLLDGSDISDVGVSYLRL--TVITSLVKLSLRGCKRLTDKCISA 299 (479)
Q Consensus 226 ~~~~L~~L~l~~~~~l~~~~~~~l----~~l~~L~~L~l~~~~l~~~~l~~l~~--~~~~~L~~L~l~~~~~l~~~~~~~ 299 (479)
.-+.|+.+.... +.+.+.+...+ ...+.|+.+++..|.|...+...+.. ..|++|+.|++.++ .++..+-..
T Consensus 155 ~~~~Lrv~i~~r-Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~ 232 (382)
T KOG1909|consen 155 SKPKLRVFICGR-NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVA 232 (382)
T ss_pred CCcceEEEEeec-cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHH
Confidence 567788888776 45665554433 35678888888888777766533322 35888888888884 456555444
Q ss_pred Hhcc-CCCCCccEEecCCCCCCCHHHHHH----HHhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEc
Q 011699 300 LFDG-TSKLQLQELDLSNLPHLSDNGILT----LATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDL 374 (479)
Q Consensus 300 l~~~-~~~~~L~~L~L~~~~~i~~~~~~~----l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l 374 (479)
++.. +.+++|+.|++++| .+.+.|..+ +....|+|+.|.+.+| .|+..+...++.... ..|.|+.|+|
T Consensus 233 LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~-----ek~dL~kLnL 305 (382)
T KOG1909|consen 233 LAKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMA-----EKPDLEKLNL 305 (382)
T ss_pred HHHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHh-----cchhhHHhcC
Confidence 4432 33478999999998 666555554 4455689999999999 788777766665544 4788999999
Q ss_pred cCCCCC--CHHHHHHhhc
Q 011699 375 YNCGGI--TQLAFRWLKK 390 (479)
Q Consensus 375 ~~c~~i--~~~~~~~l~~ 390 (479)
++|. + .+.++..+..
T Consensus 306 ngN~-l~e~de~i~ei~~ 322 (382)
T KOG1909|consen 306 NGNR-LGEKDEGIDEIAS 322 (382)
T ss_pred Cccc-ccccchhHHHHHH
Confidence 9998 7 5666766655
No 15
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.48 E-value=3.1e-13 Score=135.52 Aligned_cols=255 Identities=28% Similarity=0.391 Sum_probs=186.2
Q ss_pred ccchHHHHHHHHhCCCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCC-CCCCH--HHHHHHHhcCCCccEEEcCCC
Q 011699 137 RVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHG-TQLTD--LVFHDISATSLSLTHVCLRWC 213 (479)
Q Consensus 137 ~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~-~~~~~--~~~~~~~~~~~~L~~L~l~~~ 213 (479)
.........+...++.|+.|.+..|..+++.....+...+++|+.|+++++ ..... .....+...+++|+.|++++|
T Consensus 174 ~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~ 253 (482)
T KOG1947|consen 174 LLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGC 253 (482)
T ss_pred cccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhh
Confidence 444555566666688899998888888887777777788889999988762 22222 223346667788899999988
Q ss_pred CCCCHHHHHHhh-CCCCCCEEecCCCCCCChHHHHhhh-cCCCCcEEEccCC-CCchHHHHHHHhhcCCCccEEecCCC-
Q 011699 214 NLLTNHAIKSLA-SNTGIKVLDLRDCKNLGDEALRAIS-SLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGC- 289 (479)
Q Consensus 214 ~~~~~~~~~~l~-~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~-~l~~~~l~~l~~~~~~~L~~L~l~~~- 289 (479)
..+++.++..++ .|++|+.|.+.+|..+++.++..++ .+++|++|++++| .+++.++..+.. .+++|+.|.+..+
T Consensus 254 ~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~-~c~~l~~l~~~~~~ 332 (482)
T KOG1947|consen 254 GLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLK-NCPNLRELKLLSLN 332 (482)
T ss_pred hccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHH-hCcchhhhhhhhcC
Confidence 778888888777 4888999988888778888887776 6888999999887 566777877766 5888777665543
Q ss_pred --CCCCHHHHHHHhccCCCC-CccEEecCCCCCCCHHHHHHHHhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCC
Q 011699 290 --KRLTDKCISALFDGTSKL-QLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYG 366 (479)
Q Consensus 290 --~~l~~~~~~~l~~~~~~~-~L~~L~L~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~ 366 (479)
..+++.++....... . .+..+.+.+|+.+++..+.... .......+.+.+|+.++ .++..... .+
T Consensus 333 ~c~~l~~~~l~~~~~~~--~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~-~~l~~~~~--------~~ 400 (482)
T KOG1947|consen 333 GCPSLTDLSLSGLLTLT--SDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLT-ESLELRLC--------RS 400 (482)
T ss_pred CCccHHHHHHHHhhccC--chhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccc-hHHHHHhc--------cC
Confidence 446666666654333 2 6777777778777777776554 22223357778888887 66666665 45
Q ss_pred CCccEEEccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011699 367 SSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 367 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
..++.|+++.|..+++..+..... .+.+++.+++.+|.
T Consensus 401 ~~l~~L~l~~~~~~t~~~l~~~~~-~~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 401 DSLRVLNLSDCRLVTDKGLRCLAD-SCSNLKDLDLSGCR 438 (482)
T ss_pred CccceEecccCccccccchHHHhh-hhhccccCCccCcc
Confidence 559999999999888888887765 37788899998887
No 16
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.48 E-value=1.4e-15 Score=144.19 Aligned_cols=201 Identities=18% Similarity=0.190 Sum_probs=121.4
Q ss_pred HhCCCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHhhCC
Q 011699 148 DKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASN 227 (479)
Q Consensus 148 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 227 (479)
..+.+|++|.|++ +.+....++++ ..+.+|..|.+++.. -+...+......+.+|..++++. +.++.. ..++-.+
T Consensus 170 RRL~~LqtL~Ls~-NPL~hfQLrQL-PsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS~-N~Lp~v-Pecly~l 244 (1255)
T KOG0444|consen 170 RRLSMLQTLKLSN-NPLNHFQLRQL-PSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLSE-NNLPIV-PECLYKL 244 (1255)
T ss_pred HHHhhhhhhhcCC-ChhhHHHHhcC-ccchhhhhhhccccc-chhhcCCCchhhhhhhhhccccc-cCCCcc-hHHHhhh
Confidence 3456677777777 44554444443 234555666665432 22222222333455777777776 455433 2345577
Q ss_pred CCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCC----HHHHHHHhcc
Q 011699 228 TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT----DKCISALFDG 303 (479)
Q Consensus 228 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~----~~~~~~l~~~ 303 (479)
++|+.|++|++ .++.... ......+|++|+++.|+++. ....+.+ +++|+.|.+.+ +.++ +.|+..+
T Consensus 245 ~~LrrLNLS~N-~iteL~~-~~~~W~~lEtLNlSrNQLt~-LP~avcK--L~kL~kLy~n~-NkL~FeGiPSGIGKL--- 315 (1255)
T KOG0444|consen 245 RNLRRLNLSGN-KITELNM-TEGEWENLETLNLSRNQLTV-LPDAVCK--LTKLTKLYANN-NKLTFEGIPSGIGKL--- 315 (1255)
T ss_pred hhhheeccCcC-ceeeeec-cHHHHhhhhhhccccchhcc-chHHHhh--hHHHHHHHhcc-CcccccCCccchhhh---
Confidence 88888888873 4443221 12234578888888887763 2233444 67788887766 3454 3444444
Q ss_pred CCCCCccEEecCCCCCCC--HHHHHHHHhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccCCCCCC
Q 011699 304 TSKLQLQELDLSNLPHLS--DNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGIT 381 (479)
Q Consensus 304 ~~~~~L~~L~L~~~~~i~--~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~ 381 (479)
.+|+.+..++ +.+. ++++. .|+.|+.|.++.|..|+-. .+++ -++.|+.|++..|+++-
T Consensus 316 ---~~Levf~aan-N~LElVPEglc----RC~kL~kL~L~~NrLiTLP------eaIH-----lL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 316 ---IQLEVFHAAN-NKLELVPEGLC----RCVKLQKLKLDHNRLITLP------EAIH-----LLPDLKVLDLRENPNLV 376 (1255)
T ss_pred ---hhhHHHHhhc-cccccCchhhh----hhHHHHHhcccccceeech------hhhh-----hcCCcceeeccCCcCcc
Confidence 6788888887 4543 66665 6999999999988555421 2221 47889999999998754
No 17
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.47 E-value=3.3e-13 Score=135.34 Aligned_cols=246 Identities=27% Similarity=0.360 Sum_probs=185.3
Q ss_pred HHHhCCCCCEEEEcCCcc-cCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCC-CCCCCHHH---
Q 011699 146 MADKCASMESICLGGFCR-VTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRW-CNLLTNHA--- 220 (479)
Q Consensus 146 l~~~~~~L~~L~l~~~~~-l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~--- 220 (479)
+...+..++.+.+..+.. ........+...++.|+.|.+.++..+.+.++..+...++.|+.|++++ |......+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 235 (482)
T KOG1947|consen 156 LSRGLANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLL 235 (482)
T ss_pred HHHHHHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHh
Confidence 334455666666665543 3444456666678999999999999988888888899999999999987 33333333
Q ss_pred HHHhhCCCCCCEEecCCCCCCChHHHHhhh-cCCCCcEEEccCCC-CchHHHHHHHhhcCCCccEEecCCCCCCCHHHHH
Q 011699 221 IKSLASNTGIKVLDLRDCKNLGDEALRAIS-SLPQLKILLLDGSD-ISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCIS 298 (479)
Q Consensus 221 ~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~-l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~ 298 (479)
......+++|+.|+++.|..+++.++..++ .+++|+.|.+..|. +++.++..+.. .+++|++|++++|..+++.++.
T Consensus 236 ~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~-~~~~L~~L~l~~c~~~~d~~l~ 314 (482)
T KOG1947|consen 236 LLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAE-RCPSLRELDLSGCHGLTDSGLE 314 (482)
T ss_pred hhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHH-hcCcccEEeeecCccchHHHHH
Confidence 222337899999999998779999999888 58999999988886 89999999999 8999999999999999999888
Q ss_pred HHhccCCCCCccEEecCC---CCCCCHHHHHHHHhcCC-CCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEc
Q 011699 299 ALFDGTSKLQLQELDLSN---LPHLSDNGILTLATCRV-PISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDL 374 (479)
Q Consensus 299 ~l~~~~~~~~L~~L~L~~---~~~i~~~~~~~l~~~~~-~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l 374 (479)
.+...| ++|+.|.+.. |..+++..+..+..... .+..+.+.+|+.+++..+..... ......+.+
T Consensus 315 ~~~~~c--~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~---------~~~~~~~~l 383 (482)
T KOG1947|consen 315 ALLKNC--PNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGI---------SDLGLELSL 383 (482)
T ss_pred HHHHhC--cchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhc---------cCcchHHHh
Confidence 887766 7776665544 44577777766655443 67788888888888777766553 111225778
Q ss_pred cCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011699 375 YNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 375 ~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
.+|+.++ ..+..... .+.+++.|+++.|.
T Consensus 384 ~gc~~l~-~~l~~~~~-~~~~l~~L~l~~~~ 412 (482)
T KOG1947|consen 384 RGCPNLT-ESLELRLC-RSDSLRVLNLSDCR 412 (482)
T ss_pred cCCcccc-hHHHHHhc-cCCccceEecccCc
Confidence 8888887 66666554 45569999999987
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.46 E-value=3.6e-13 Score=146.81 Aligned_cols=308 Identities=17% Similarity=0.168 Sum_probs=190.0
Q ss_pred HHHhhhccceeecccccchhhhhccC------CCC---CCCCCCCccCCCCCCCCcEEEeecCc-cChhHHHHHHHcCCC
Q 011699 16 WALASEKLTSLEIGYISSVMVTELLS------PNV---EPHQSPNQIRPSILPGIQKLCLSVDY-ITDAMVGTISQGLVS 85 (479)
Q Consensus 16 ~~~~p~~l~~L~l~~~~~~~~~~~~~------~~~---~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~ 85 (479)
|..+|..|+.|.+...|...++..+. +.+ .....|.. ...+++|+.|+|+.+. +.. ++.+ ..+++
T Consensus 584 ~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~--~~~l~~Lk~L~Ls~~~~l~~--ip~l-s~l~~ 658 (1153)
T PLN03210 584 FDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG--VHSLTGLRNIDLRGSKNLKE--IPDL-SMATN 658 (1153)
T ss_pred hhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc--cccCCCCCEEECCCCCCcCc--CCcc-ccCCc
Confidence 55667789999988554433322111 111 11123332 2348899999998542 322 2333 36899
Q ss_pred ccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccccchHHHHHHHHhCCCCCEEEEcCCcccC
Q 011699 86 LTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVT 165 (479)
Q Consensus 86 L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~ 165 (479)
|++|+|++|..+... ...+..+++|+.|++.+|.. ...++.. ..+++|+.|++++|..+.
T Consensus 659 Le~L~L~~c~~L~~l---------p~si~~L~~L~~L~L~~c~~-----L~~Lp~~------i~l~sL~~L~Lsgc~~L~ 718 (1153)
T PLN03210 659 LETLKLSDCSSLVEL---------PSSIQYLNKLEDLDMSRCEN-----LEILPTG------INLKSLYRLNLSGCSRLK 718 (1153)
T ss_pred ccEEEecCCCCcccc---------chhhhccCCCCEEeCCCCCC-----cCccCCc------CCCCCCCEEeCCCCCCcc
Confidence 999999999654321 23567889999999976421 1122111 147899999999986554
Q ss_pred HHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCCH------HHHHHhhCCCCCCEEecCCCC
Q 011699 166 DTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTN------HAIKSLASNTGIKVLDLRDCK 239 (479)
Q Consensus 166 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------~~~~~l~~~~~L~~L~l~~~~ 239 (479)
.. .....+|+.|+++++.. ... ... ..+++|++|.+.++....- ........+++|+.|++++|.
T Consensus 719 ~~-----p~~~~nL~~L~L~~n~i-~~l--P~~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~ 789 (1153)
T PLN03210 719 SF-----PDISTNISWLDLDETAI-EEF--PSN-LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP 789 (1153)
T ss_pred cc-----ccccCCcCeeecCCCcc-ccc--ccc-ccccccccccccccchhhccccccccchhhhhccccchheeCCCCC
Confidence 32 12356899999987652 221 111 1456888888876432100 000011245789999999875
Q ss_pred CCChHHHHhhhcCCCCcEEEccCCC-CchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCC
Q 011699 240 NLGDEALRAISSLPQLKILLLDGSD-ISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLP 318 (479)
Q Consensus 240 ~l~~~~~~~l~~l~~L~~L~l~~~~-l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~L~~~~ 318 (479)
.+... ...+.++++|+.|++++|. +.. ++... .+++|+.|++++|..+... ... .++|+.|+|++ +
T Consensus 790 ~l~~l-P~si~~L~~L~~L~Ls~C~~L~~--LP~~~--~L~sL~~L~Ls~c~~L~~~--p~~-----~~nL~~L~Ls~-n 856 (1153)
T PLN03210 790 SLVEL-PSSIQNLHKLEHLEIENCINLET--LPTGI--NLESLESLDLSGCSRLRTF--PDI-----STNISDLNLSR-T 856 (1153)
T ss_pred Ccccc-ChhhhCCCCCCEEECCCCCCcCe--eCCCC--CccccCEEECCCCCccccc--ccc-----ccccCEeECCC-C
Confidence 54432 3457789999999999873 332 11111 3788999999999776421 111 16899999998 4
Q ss_pred CCCHHHHHHHHhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccCCCCCCH
Q 011699 319 HLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQ 382 (479)
Q Consensus 319 ~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~ 382 (479)
.++.... . ...+++|+.|++.+|+.+..... ... .+++|+.+++++|.+++.
T Consensus 857 ~i~~iP~-s-i~~l~~L~~L~L~~C~~L~~l~~--~~~--------~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 857 GIEEVPW-W-IEKFSNLSFLDMNGCNNLQRVSL--NIS--------KLKHLETVDFSDCGALTE 908 (1153)
T ss_pred CCccChH-H-HhcCCCCCEEECCCCCCcCccCc--ccc--------cccCCCeeecCCCccccc
Confidence 6653211 1 23688999999999977764222 122 578899999999987764
No 19
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.21 E-value=1.6e-10 Score=99.37 Aligned_cols=90 Identities=17% Similarity=0.178 Sum_probs=46.6
Q ss_pred CCccEEecCCCCCCCHHHHHHH----HhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccCCCCCCH
Q 011699 307 LQLQELDLSNLPHLSDNGILTL----ATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQ 382 (479)
Q Consensus 307 ~~L~~L~L~~~~~i~~~~~~~l----~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~ 382 (479)
.+|+++.+.. +.|.+.++..+ ...+.+|+.|++..| .++..+-..++.++. .++.|+.|.+..|- ++.
T Consensus 185 ~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~-----~W~~lrEL~lnDCl-ls~ 256 (388)
T COG5238 185 ENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALC-----EWNLLRELRLNDCL-LSN 256 (388)
T ss_pred cCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhc-----ccchhhhccccchh-hcc
Confidence 4566666655 45655554433 123456666666666 555555555555554 34556666666665 443
Q ss_pred HHHHHhh----ccCCCCccEEEecCC
Q 011699 383 LAFRWLK----KPYFPRLRWLGVTGS 404 (479)
Q Consensus 383 ~~~~~l~----~~~~~~L~~L~l~~~ 404 (479)
.+...+. .-..|+|..|....+
T Consensus 257 ~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 257 EGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred ccHHHHHHHhhhhcCCCccccccchh
Confidence 3332222 123455665555544
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.18 E-value=2.1e-12 Score=128.25 Aligned_cols=127 Identities=22% Similarity=0.251 Sum_probs=58.0
Q ss_pred CCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCC--CCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHh
Q 011699 253 PQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC--KRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLAT 330 (479)
Q Consensus 253 ~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~--~~l~~~~~~~l~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~ 330 (479)
+.|+.|++.+|.+++..++.+.. +++|+.|+++++ +.+.+..+..+ ..|++|+|++ +.++... ..++
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~--~~hLKVLhLsyNrL~~fpas~~~kl------e~LeeL~LSG-NkL~~Lp-~tva- 427 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVN--FKHLKVLHLSYNRLNSFPASKLRKL------EELEELNLSG-NKLTTLP-DTVA- 427 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhcc--ccceeeeeecccccccCCHHHHhch------HHhHHHhccc-chhhhhh-HHHH-
Confidence 34555555555555555554444 555555555553 22333333333 4555555555 3443222 1111
Q ss_pred cCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011699 331 CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 331 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
.|+.|++|...+| .+.. ++.++ .++.|+.+|++.|. ++...+..... .|+|++|+++||.
T Consensus 428 ~~~~L~tL~ahsN-~l~~--fPe~~---------~l~qL~~lDlS~N~-L~~~~l~~~~p--~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 428 NLGRLHTLRAHSN-QLLS--FPELA---------QLPQLKVLDLSCNN-LSEVTLPEALP--SPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhhHHHhhcCC-ceee--chhhh---------hcCcceEEecccch-hhhhhhhhhCC--CcccceeeccCCc
Confidence 3455555555444 2221 22333 24555555555444 44433333322 2555555555554
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.10 E-value=8.9e-12 Score=123.90 Aligned_cols=128 Identities=21% Similarity=0.276 Sum_probs=65.6
Q ss_pred CCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHH--HHHHhccC
Q 011699 227 NTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKC--ISALFDGT 304 (479)
Q Consensus 227 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~--~~~l~~~~ 304 (479)
.+.|+.|.+.+ +.+++..+..+.+..+|+.|+|++|.+.......+.+ ++.|+.|+++|+ .++... +...
T Consensus 358 ~~~Lq~Lylan-N~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~k--le~LeeL~LSGN-kL~~Lp~tva~~---- 429 (1081)
T KOG0618|consen 358 HAALQELYLAN-NHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRK--LEELEELNLSGN-KLTTLPDTVANL---- 429 (1081)
T ss_pred hHHHHHHHHhc-CcccccchhhhccccceeeeeecccccccCCHHHHhc--hHHhHHHhcccc-hhhhhhHHHHhh----
Confidence 34455555555 3566666666666666666666666554433333333 555666666662 333221 1112
Q ss_pred CCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccCCC
Q 011699 305 SKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 378 (479)
Q Consensus 305 ~~~~L~~L~L~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 378 (479)
+.|++|...+ +.+..-. .+. .++.|+.++++.| .++...+..... .++|++|++++|.
T Consensus 430 --~~L~tL~ahs-N~l~~fP--e~~-~l~qL~~lDlS~N-~L~~~~l~~~~p---------~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 430 --GRLHTLRAHS-NQLLSFP--ELA-QLPQLKVLDLSCN-NLSEVTLPEALP---------SPNLKYLDLSGNT 487 (1081)
T ss_pred --hhhHHHhhcC-Cceeech--hhh-hcCcceEEecccc-hhhhhhhhhhCC---------CcccceeeccCCc
Confidence 4566665555 3332111 111 3566666666555 555444444332 2566666666665
No 22
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=2.6e-11 Score=110.96 Aligned_cols=209 Identities=17% Similarity=0.170 Sum_probs=126.7
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccc
Q 011699 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 137 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 137 (479)
+.+|+...|..+.+........++.||+++.|+|++|-.. -.......+..+|+|+.|+++.+. +..
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~-------nw~~v~~i~eqLp~Le~LNls~Nr------l~~ 186 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH-------NWFPVLKIAEQLPSLENLNLSSNR------LSN 186 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHH-------hHHHHHHHHHhcccchhccccccc------ccC
Confidence 7788888888777777665566678888888888886310 011122233478888888886421 111
Q ss_pred cchHHHHHHHHhCCCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCC
Q 011699 138 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 217 (479)
Q Consensus 138 ~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 217 (479)
...... ...+++|+.|.|+.| .++...+..++..+|+|+.|.++.+..+..... -......|++|+|++.+.++
T Consensus 187 ~~~s~~---~~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~--~~~i~~~L~~LdLs~N~li~ 260 (505)
T KOG3207|consen 187 FISSNT---TLLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKAT--STKILQTLQELDLSNNNLID 260 (505)
T ss_pred Cccccc---hhhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecc--hhhhhhHHhhccccCCcccc
Confidence 111111 123567888888887 677777777778888888888887742211111 11233477888888865555
Q ss_pred HHHHHHhhCCCCCCEEecCCCCCCChHHHHhh------hcCCCCcEEEccCCCCchH-HHHHHHhhcCCCccEEecCC
Q 011699 218 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAI------SSLPQLKILLLDGSDISDV-GVSYLRLTVITSLVKLSLRG 288 (479)
Q Consensus 218 ~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l------~~l~~L~~L~l~~~~l~~~-~l~~l~~~~~~~L~~L~l~~ 288 (479)
......++.+|.|+.|.++.| .+.+...... ..+++|+.|++..|.+.+. .+..+.. +++|+.|.+..
T Consensus 261 ~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~--l~nlk~l~~~~ 335 (505)
T KOG3207|consen 261 FDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRT--LENLKHLRITL 335 (505)
T ss_pred cccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchhhc--cchhhhhhccc
Confidence 544555667888888887764 4444332222 3567888888888776442 2233333 56666666554
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=3.8e-11 Score=109.85 Aligned_cols=161 Identities=19% Similarity=0.140 Sum_probs=79.0
Q ss_pred cCCCccEEecccccccccccccccchHHHHHHHHhCCCCCEEEEcCCcccC-HHHHHHHHHhCCCCceEEecCCCCCCHH
Q 011699 115 QHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVT-DTGFKTILHSCSNLYKLRVSHGTQLTDL 193 (479)
Q Consensus 115 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~-~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 193 (479)
++.+|+.+.+.+ ..+...+.....+.|++++.|+|+. +-+. -..+..+++.+|+|+.|+++.+......
T Consensus 119 n~kkL~~IsLdn---------~~V~~~~~~~~~k~~~~v~~LdLS~-NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~ 188 (505)
T KOG3207|consen 119 NLKKLREISLDN---------YRVEDAGIEEYSKILPNVRDLDLSR-NLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI 188 (505)
T ss_pred hHHhhhheeecC---------ccccccchhhhhhhCCcceeecchh-hhHHhHHHHHHHHHhcccchhcccccccccCCc
Confidence 556666666653 3334333334456677777777776 2222 2334566667777777777665431110
Q ss_pred HHHHHHhcCCCccEEEcCCCCCCCHHHHHHhhCCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHH-HHH
Q 011699 194 VFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVG-VSY 272 (479)
Q Consensus 194 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~-l~~ 272 (479)
+ .......+.|+.|.++.|..-.......+..+|+|+.|.+..++.+.. ......-+..|++|+|++|.+-+.. +..
T Consensus 189 ~-s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~-~~~~~~i~~~L~~LdLs~N~li~~~~~~~ 266 (505)
T KOG3207|consen 189 S-SNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI-KATSTKILQTLQELDLSNNNLIDFDQGYK 266 (505)
T ss_pred c-ccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce-ecchhhhhhHHhhccccCCcccccccccc
Confidence 0 001113456666666666333222222333666666666666432111 1111123455666666666443322 222
Q ss_pred HHhhcCCCccEEecCCC
Q 011699 273 LRLTVITSLVKLSLRGC 289 (479)
Q Consensus 273 l~~~~~~~L~~L~l~~~ 289 (479)
.+ .+|.|..|+++.|
T Consensus 267 ~~--~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 267 VG--TLPGLNQLNLSST 281 (505)
T ss_pred cc--cccchhhhhcccc
Confidence 22 2566666666553
No 24
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.94 E-value=4.6e-08 Score=84.52 Aligned_cols=92 Identities=22% Similarity=0.227 Sum_probs=67.8
Q ss_pred CCccEEecCCCCCCCH---HHHHHHHhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccCCCCCCHH
Q 011699 307 LQLQELDLSNLPHLSD---NGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQL 383 (479)
Q Consensus 307 ~~L~~L~L~~~~~i~~---~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~ 383 (479)
|.|+++.... +.+.. .-..+..+.-.+|+.+.+..| .|.+.|+..++..... .+++|+.|++..|. ++..
T Consensus 157 p~Le~vicgr-NRlengs~~~~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~----y~~~LevLDlqDNt-ft~~ 229 (388)
T COG5238 157 PKLEVVICGR-NRLENGSKELSAALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLF----YSHSLEVLDLQDNT-FTLE 229 (388)
T ss_pred CCceEEEecc-chhccCcHHHHHHHHHhhcCceeEEeeec-CcCcchhHHHHHHHHH----HhCcceeeeccccc-hhhh
Confidence 8899999887 45442 223334443468999999999 8898887766542221 68999999999998 8877
Q ss_pred HHHHhhcc--CCCCccEEEecCCC
Q 011699 384 AFRWLKKP--YFPRLRWLGVTGSV 405 (479)
Q Consensus 384 ~~~~l~~~--~~~~L~~L~l~~~~ 405 (479)
+-..++.+ .++.|+.|.+.+|.
T Consensus 230 gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 230 GSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred hHHHHHHHhcccchhhhccccchh
Confidence 76666542 36789999999997
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.87 E-value=4.7e-09 Score=107.27 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=16.3
Q ss_pred CCCcEEEeecCccChhHHHHHHHcCCCccEEeccCC
Q 011699 59 PGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDA 94 (479)
Q Consensus 59 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 94 (479)
++|+.|++..|.++. + ....++|++|++++|
T Consensus 222 ~~L~~L~L~~N~Lt~--L---P~lp~~Lk~LdLs~N 252 (788)
T PRK15387 222 AHITTLVIPDNNLTS--L---PALPPELRTLEVSGN 252 (788)
T ss_pred cCCCEEEccCCcCCC--C---CCCCCCCcEEEecCC
Confidence 456666666555543 1 113456666666665
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.86 E-value=2.7e-09 Score=109.01 Aligned_cols=224 Identities=17% Similarity=0.170 Sum_probs=113.2
Q ss_pred CCCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEeccccccccccccc
Q 011699 57 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFR 136 (479)
Q Consensus 57 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~ 136 (479)
..++|++|++++|.+.. ++ ...++|+.|++.+|. ++. ++. ...+|+.|++.++ .+.
T Consensus 240 lp~~Lk~LdLs~N~Lts--LP---~lp~sL~~L~Ls~N~---------L~~--Lp~--lp~~L~~L~Ls~N------~Lt 295 (788)
T PRK15387 240 LPPELRTLEVSGNQLTS--LP---VLPPGLLELSIFSNP---------LTH--LPA--LPSGLCKLWIFGN------QLT 295 (788)
T ss_pred CCCCCcEEEecCCccCc--cc---CcccccceeeccCCc---------hhh--hhh--chhhcCEEECcCC------ccc
Confidence 36899999999988774 22 245789999999884 221 222 1346777887641 122
Q ss_pred ccchHHHHHHHHhCCCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCC
Q 011699 137 RVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLL 216 (479)
Q Consensus 137 ~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 216 (479)
.+. ...++|+.|++++ +.+... . ....+|+.|.+++|.. +.. .....+|+.|++++ +.+
T Consensus 296 ~LP--------~~p~~L~~LdLS~-N~L~~L--p---~lp~~L~~L~Ls~N~L-~~L-----P~lp~~Lq~LdLS~-N~L 354 (788)
T PRK15387 296 SLP--------VLPPGLQELSVSD-NQLASL--P---ALPSELCKLWAYNNQL-TSL-----PTLPSGLQELSVSD-NQL 354 (788)
T ss_pred ccc--------ccccccceeECCC-CccccC--C---CCcccccccccccCcc-ccc-----cccccccceEecCC-Ccc
Confidence 221 1246788888887 355432 1 1123566777665542 211 11123677777776 344
Q ss_pred CHHHHHHhhCCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHH
Q 011699 217 TNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKC 296 (479)
Q Consensus 217 ~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~ 296 (479)
...+. ..++|+.|+++++ .+... .. ..++|+.|++++|.++... . ..++|+.|+++++. ++.
T Consensus 355 s~LP~----lp~~L~~L~Ls~N-~L~~L--P~--l~~~L~~LdLs~N~Lt~LP-----~-l~s~L~~LdLS~N~-Lss-- 416 (788)
T PRK15387 355 ASLPT----LPSELYKLWAYNN-RLTSL--PA--LPSGLKELIVSGNRLTSLP-----V-LPSELKELMVSGNR-LTS-- 416 (788)
T ss_pred CCCCC----CCcccceehhhcc-ccccC--cc--cccccceEEecCCcccCCC-----C-cccCCCEEEccCCc-CCC--
Confidence 43211 1245666666653 34321 11 1245666777666655211 1 13456666666632 321
Q ss_pred HHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEecCCCCCCCHHHHH
Q 011699 297 ISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVI 352 (479)
Q Consensus 297 ~~~l~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~ 352 (479)
+..+. .+|+.|++++ +.++... ..+. .+++|+.|++++| .++...+.
T Consensus 417 IP~l~-----~~L~~L~Ls~-NqLt~LP-~sl~-~L~~L~~LdLs~N-~Ls~~~~~ 463 (788)
T PRK15387 417 LPMLP-----SGLLSLSVYR-NQLTRLP-ESLI-HLSSETTVNLEGN-PLSERTLQ 463 (788)
T ss_pred CCcch-----hhhhhhhhcc-CcccccC-hHHh-hccCCCeEECCCC-CCCchHHH
Confidence 00110 3455566655 3444211 0111 3556666666666 44444333
No 27
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=3.3e-09 Score=92.60 Aligned_cols=232 Identities=19% Similarity=0.144 Sum_probs=135.9
Q ss_pred CCEEEEcCCcccC-HHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHh-hCCCCC
Q 011699 153 MESICLGGFCRVT-DTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSL-ASNTGI 230 (479)
Q Consensus 153 L~~L~l~~~~~l~-~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L 230 (479)
++-|.+.+| .+. ...+..+...+..++.+++.++..-....+..+...+|.|+.|+++. +.+.. .+..+ ....+|
T Consensus 47 ~ellvln~~-~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~-N~L~s-~I~~lp~p~~nl 123 (418)
T KOG2982|consen 47 LELLVLNGS-IIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSC-NSLSS-DIKSLPLPLKNL 123 (418)
T ss_pred hhhheecCC-CCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccC-CcCCC-ccccCcccccce
Confidence 344455554 333 22344555666777777777766555666667777777777777776 33322 12223 255677
Q ss_pred CEEecCCCCCCChHHHHh-hhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCc
Q 011699 231 KVLDLRDCKNLGDEALRA-ISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQL 309 (479)
Q Consensus 231 ~~L~l~~~~~l~~~~~~~-l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L 309 (479)
+.|.+.| ..+....... +..+|.+++|+++.|.+. .+++ .++....+. +.+
T Consensus 124 ~~lVLNg-T~L~w~~~~s~l~~lP~vtelHmS~N~~r----------------q~n~------Dd~c~e~~s-----~~v 175 (418)
T KOG2982|consen 124 RVLVLNG-TGLSWTQSTSSLDDLPKVTELHMSDNSLR----------------QLNL------DDNCIEDWS-----TEV 175 (418)
T ss_pred EEEEEcC-CCCChhhhhhhhhcchhhhhhhhccchhh----------------hhcc------ccccccccc-----hhh
Confidence 7777766 3554444333 335666677766655221 1111 112222221 567
Q ss_pred cEEecCCCCCCCHHHHHHHHhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccCCCCCCHHHHHHhh
Q 011699 310 QELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLK 389 (479)
Q Consensus 310 ~~L~L~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~ 389 (479)
++|++..|....+.....+.+.+|++..+.+..|| +.+...+.-.. .+|.+-.|+++.++--+..++..+.
T Consensus 176 ~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se--------~~p~~~~LnL~~~~idswasvD~Ln 246 (418)
T KOG2982|consen 176 LTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSE--------PFPSLSCLNLGANNIDSWASVDALN 246 (418)
T ss_pred hhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcccCC--------CCCcchhhhhcccccccHHHHHHHc
Confidence 77777777555566666677778888888888884 33333333333 5677778888877744557777776
Q ss_pred ccCCCCccEEEecCCCCHHHHHH------HHhcCCCceeeccC
Q 011699 390 KPYFPRLRWLGVTGSVNRDILDA------LARSRPFLNVACRG 426 (479)
Q Consensus 390 ~~~~~~L~~L~l~~~~~~~~~~~------~~~~~p~l~~~~~~ 426 (479)
. +|.|..|.+.+++..+.++. +..+.|++++...+
T Consensus 247 ~--f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 247 G--FPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred C--CchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 5 88888888888874333322 23355666666554
No 28
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.79 E-value=3.2e-08 Score=100.72 Aligned_cols=214 Identities=19% Similarity=0.181 Sum_probs=148.7
Q ss_pred CCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccc--cchH-HHHh-hh--cCCCccEEeccccccccc
Q 011699 59 PGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFD--LTNS-GLQQ-IN--QHGKLKHLSLIRSQEFLI 132 (479)
Q Consensus 59 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~--~~~~-~l~~-l~--~~~~L~~L~l~~~~~~~~ 132 (479)
-++...++.+.......+..+.+ ..|++|.+.+......+.... +... .+.. +. .-.+|++|++++
T Consensus 60 f~ltki~l~~~~~~~~~~~~l~~--~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G------ 131 (699)
T KOG3665|consen 60 FNLTKIDLKNVTLQHQTLEMLRK--QDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISG------ 131 (699)
T ss_pred heeEEeeccceecchhHHHHHhh--ccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccc------
Confidence 36777777777777777766653 339999988765443332221 1100 1111 11 446899999954
Q ss_pred ccccccchHHHHHHHHhCCCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCC
Q 011699 133 TYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRW 212 (479)
Q Consensus 133 ~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 212 (479)
...+...+...+...+|+|++|.+.+ ..+....+..+...+|+|..|++++...-.-. -...+++|+.|.+.+
T Consensus 132 --~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~----GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 132 --SELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTNISNLS----GISRLKNLQVLSMRN 204 (699)
T ss_pred --cchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCCccCcH----HHhccccHHHHhccC
Confidence 45667777888888999999999999 45655558888899999999999986532222 234677999999888
Q ss_pred CCCCCHHHHHHhhCCCCCCEEecCCCCCCChH--H---HHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecC
Q 011699 213 CNLLTNHAIKSLASNTGIKVLDLRDCKNLGDE--A---LRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLR 287 (479)
Q Consensus 213 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~--~---~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~ 287 (479)
-...+...+..+..+++|+.||+|........ . ++.-..+|+|+.|+.+++.++...+..+.. ..|+|+.+..-
T Consensus 205 Le~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~-sH~~L~~i~~~ 283 (699)
T KOG3665|consen 205 LEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN-SHPNLQQIAAL 283 (699)
T ss_pred CCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH-hCccHhhhhhh
Confidence 65555566777889999999999974443333 1 111126899999999999999988888887 67777766654
Q ss_pred C
Q 011699 288 G 288 (479)
Q Consensus 288 ~ 288 (479)
+
T Consensus 284 ~ 284 (699)
T KOG3665|consen 284 D 284 (699)
T ss_pred h
Confidence 3
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.73 E-value=1e-09 Score=99.43 Aligned_cols=147 Identities=14% Similarity=0.119 Sum_probs=83.3
Q ss_pred ccchhhHHHHHHhhhccceeecccccchhhhhccCCCCCCCCCCCccCCCCCCCCcEEEeecCccChhHHHHHHHcCCCc
Q 011699 7 FLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSL 86 (479)
Q Consensus 7 ~~~~~~~~~~~~~p~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L 86 (479)
.....+..++..+|++...+.+.......++.-. ...+++||+|+|+.|.|+.....++. .+++|
T Consensus 53 Cr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~a--------------F~~l~~LRrLdLS~N~Is~I~p~AF~-GL~~l 117 (498)
T KOG4237|consen 53 CRGKGLTEVPANLPPETVEIRLDQNQISSIPPGA--------------FKTLHRLRRLDLSKNNISFIAPDAFK-GLASL 117 (498)
T ss_pred ccCCCcccCcccCCCcceEEEeccCCcccCChhh--------------ccchhhhceecccccchhhcChHhhh-hhHhh
Confidence 3455677788888888888877632211111110 24488999999999988887766664 88899
Q ss_pred cEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccccchHHHHHHHHhCCCCCEEEEcCCcccCH
Q 011699 87 THLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTD 166 (479)
Q Consensus 87 ~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~ 166 (479)
.+|.+.+++ +|++..-..++.+..|+.|.+..+ .+.-+....+ ..+++|..|.+.. +.+..
T Consensus 118 ~~Lvlyg~N--------kI~~l~k~~F~gL~slqrLllNan------~i~Cir~~al----~dL~~l~lLslyD-n~~q~ 178 (498)
T KOG4237|consen 118 LSLVLYGNN--------KITDLPKGAFGGLSSLQRLLLNAN------HINCIRQDAL----RDLPSLSLLSLYD-NKIQS 178 (498)
T ss_pred hHHHhhcCC--------chhhhhhhHhhhHHHHHHHhcChh------hhcchhHHHH----HHhhhcchhcccc-hhhhh
Confidence 998888854 354433334556666666666431 1222222222 3455666666655 22221
Q ss_pred HHHHHHHHhCCCCceEEecCCC
Q 011699 167 TGFKTILHSCSNLYKLRVSHGT 188 (479)
Q Consensus 167 ~~~~~l~~~~~~L~~L~l~~~~ 188 (479)
. ...-++.+..++.+.+..+.
T Consensus 179 i-~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 179 I-CKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred h-ccccccchhccchHhhhcCc
Confidence 1 11112334455555554444
No 30
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.72 E-value=1.1e-07 Score=97.05 Aligned_cols=158 Identities=19% Similarity=0.185 Sum_probs=78.3
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHhhCCCCCCEEecCCCCCCChHHHHhhhcCCCCc
Q 011699 177 SNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLK 256 (479)
Q Consensus 177 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 256 (479)
.+|++|+++|...+.......+...+|+|+.|.+++-....+.......++|+|..|+||++ ++++. ..++++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl--~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL--SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc--HHHhccccHH
Confidence 35666666655444444444555566666666666532222222222335666666666664 33332 4455566666
Q ss_pred EEEccCCCCch-HHHHHHHhhcCCCccEEecCCCCCCCHH-HHH-HHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCC
Q 011699 257 ILLLDGSDISD-VGVSYLRLTVITSLVKLSLRGCKRLTDK-CIS-ALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRV 333 (479)
Q Consensus 257 ~L~l~~~~l~~-~~l~~l~~~~~~~L~~L~l~~~~~l~~~-~~~-~l~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~~~~ 333 (479)
.|.+.+-.+.. ..+..+.. +.+|+.|+++.-...... .+. .+.-+..+|.|+.||.++ ..++...+..+...-|
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~--L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg-Tdi~~~~le~ll~sH~ 275 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFN--LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG-TDINEEILEELLNSHP 275 (699)
T ss_pred HHhccCCCCCchhhHHHHhc--ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC-cchhHHHHHHHHHhCc
Confidence 66655554443 33444444 666666666653333222 111 111112236666666666 4555555555555445
Q ss_pred CCCEEec
Q 011699 334 PISELRV 340 (479)
Q Consensus 334 ~L~~L~l 340 (479)
+|+.+.+
T Consensus 276 ~L~~i~~ 282 (699)
T KOG3665|consen 276 NLQQIAA 282 (699)
T ss_pred cHhhhhh
Confidence 5554443
No 31
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.58 E-value=7.9e-10 Score=100.31 Aligned_cols=84 Identities=24% Similarity=0.271 Sum_probs=49.3
Q ss_pred HhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHhhCCCCCCEEecCCCCCCChHHHHhhhcCC
Q 011699 174 HSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLP 253 (479)
Q Consensus 174 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~ 253 (479)
.+|..|++|++..+. +.. -.....+.+++|..|++.. +++...+. .+..+.+|.+|+++++ .++.-. ..++++
T Consensus 225 ~gcs~L~Elh~g~N~-i~~-lpae~~~~L~~l~vLDLRd-Nklke~Pd-e~clLrsL~rLDlSNN-~is~Lp-~sLgnl- 297 (565)
T KOG0472|consen 225 PGCSLLKELHVGENQ-IEM-LPAEHLKHLNSLLVLDLRD-NKLKEVPD-EICLLRSLERLDLSNN-DISSLP-YSLGNL- 297 (565)
T ss_pred CccHHHHHHHhcccH-HHh-hHHHHhcccccceeeeccc-cccccCch-HHHHhhhhhhhcccCC-ccccCC-cccccc-
Confidence 345566666665432 211 1223555778888888887 56665544 3446778888888873 443222 234455
Q ss_pred CCcEEEccCCC
Q 011699 254 QLKILLLDGSD 264 (479)
Q Consensus 254 ~L~~L~l~~~~ 264 (479)
+|+.|.+.+|.
T Consensus 298 hL~~L~leGNP 308 (565)
T KOG0472|consen 298 HLKFLALEGNP 308 (565)
T ss_pred eeeehhhcCCc
Confidence 66666666663
No 32
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.58 E-value=3.2e-07 Score=94.51 Aligned_cols=34 Identities=12% Similarity=0.004 Sum_probs=20.5
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCC
Q 011699 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAP 95 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 95 (479)
.++|+.|+|++|.+.. ++.- .+++|++|++++|.
T Consensus 198 p~~L~~L~Ls~N~Lts--LP~~--l~~nL~~L~Ls~N~ 231 (754)
T PRK15370 198 PEQITTLILDNNELKS--LPEN--LQGNIKTLYANSNQ 231 (754)
T ss_pred ccCCcEEEecCCCCCc--CChh--hccCCCEEECCCCc
Confidence 3467777777766653 2111 23577777777763
No 33
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.53 E-value=4.7e-07 Score=93.33 Aligned_cols=205 Identities=14% Similarity=0.144 Sum_probs=95.7
Q ss_pred CCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHhhCCCCC
Q 011699 151 ASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGI 230 (479)
Q Consensus 151 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 230 (479)
++|+.|+++++ .+... ...+ .++|+.|++++|.. ...+.. + ..+|+.|++++ +.+...+- . -.++|
T Consensus 220 ~nL~~L~Ls~N-~LtsL-P~~l---~~~L~~L~Ls~N~L-~~LP~~-l---~s~L~~L~Ls~-N~L~~LP~-~--l~~sL 285 (754)
T PRK15370 220 GNIKTLYANSN-QLTSI-PATL---PDTIQEMELSINRI-TELPER-L---PSALQSLDLFH-NKISCLPE-N--LPEEL 285 (754)
T ss_pred cCCCEEECCCC-ccccC-Chhh---hccccEEECcCCcc-CcCChh-H---hCCCCEEECcC-CccCcccc-c--cCCCC
Confidence 45666666663 44321 1111 23566666665542 211110 1 13566666665 34432211 1 12467
Q ss_pred CEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCcc
Q 011699 231 KVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQ 310 (479)
Q Consensus 231 ~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~ 310 (479)
+.|++++| .++.... .+ .++|+.|++++|.++..... ..++|+.|.+++|. ++... ..+ .++|+
T Consensus 286 ~~L~Ls~N-~Lt~LP~-~l--p~sL~~L~Ls~N~Lt~LP~~-----l~~sL~~L~Ls~N~-Lt~LP-~~l-----~~sL~ 349 (754)
T PRK15370 286 RYLSVYDN-SIRTLPA-HL--PSGITHLNVQSNSLTALPET-----LPPGLKTLEAGENA-LTSLP-ASL-----PPELQ 349 (754)
T ss_pred cEEECCCC-ccccCcc-cc--hhhHHHHHhcCCccccCCcc-----ccccceeccccCCc-cccCC-hhh-----cCccc
Confidence 77777664 3432110 01 13566666766655531110 13567777776643 22110 011 15677
Q ss_pred EEecCCCCCCCHHHHHHHHhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccCCCCCCHH--HHHHh
Q 011699 311 ELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQL--AFRWL 388 (479)
Q Consensus 311 ~L~L~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~--~~~~l 388 (479)
.|++++| .++.... . ..++|+.|++++| .++... ..+ .+.|+.|++++|. ++.. .+..+
T Consensus 350 ~L~Ls~N-~L~~LP~-~---lp~~L~~LdLs~N-~Lt~LP-~~l-----------~~sL~~LdLs~N~-L~~LP~sl~~~ 410 (754)
T PRK15370 350 VLDVSKN-QITVLPE-T---LPPTITTLDVSRN-ALTNLP-ENL-----------PAALQIMQASRNN-LVRLPESLPHF 410 (754)
T ss_pred EEECCCC-CCCcCCh-h---hcCCcCEEECCCC-cCCCCC-HhH-----------HHHHHHHhhccCC-cccCchhHHHH
Confidence 7777774 4442111 1 1256777777777 444211 111 1246677777766 4421 22222
Q ss_pred hccCCCCccEEEecCCC
Q 011699 389 KKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 389 ~~~~~~~L~~L~l~~~~ 405 (479)
.. .+|++..|++.+|+
T Consensus 411 ~~-~~~~l~~L~L~~Np 426 (754)
T PRK15370 411 RG-EGPQPTRIIVEYNP 426 (754)
T ss_pred hh-cCCCccEEEeeCCC
Confidence 22 35677777777766
No 34
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.46 E-value=8.1e-09 Score=93.90 Aligned_cols=103 Identities=23% Similarity=0.273 Sum_probs=62.8
Q ss_pred cCCCccEEecCCCCCCCH--HHHHHHhccCCCCCccEEecCCCCCCC--HHHHHHHHhcCCCCCEEecCCCCCCCHHHHH
Q 011699 277 VITSLVKLSLRGCKRLTD--KCISALFDGTSKLQLQELDLSNLPHLS--DNGILTLATCRVPISELRVRQCPLIGDTSVI 352 (479)
Q Consensus 277 ~~~~L~~L~l~~~~~l~~--~~~~~l~~~~~~~~L~~L~L~~~~~i~--~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~ 352 (479)
.+++|..|++++.. +.+ ..+..+ ..|+.|+++. +.+. +..+.. ...|+.+-.+++ .+......
T Consensus 433 ~l~kLt~L~L~NN~-Ln~LP~e~~~l------v~Lq~LnlS~-NrFr~lP~~~y~----lq~lEtllas~n-qi~~vd~~ 499 (565)
T KOG0472|consen 433 QLQKLTFLDLSNNL-LNDLPEEMGSL------VRLQTLNLSF-NRFRMLPECLYE----LQTLETLLASNN-QIGSVDPS 499 (565)
T ss_pred hhhcceeeecccch-hhhcchhhhhh------hhhheecccc-cccccchHHHhh----HHHHHHHHhccc-cccccChH
Confidence 58899999998832 332 233333 5699999998 4554 333332 223555555545 44433333
Q ss_pred HHHhccccCCCCCCCCccEEEccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011699 353 ALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 353 ~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
.+. .+.+|.+|++.++. +.. +..... .|.+|++|.+.|++
T Consensus 500 ~l~---------nm~nL~tLDL~nNd-lq~--IPp~Lg-nmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 500 GLK---------NMRNLTTLDLQNND-LQQ--IPPILG-NMTNLRHLELDGNP 539 (565)
T ss_pred Hhh---------hhhhcceeccCCCc-hhh--CChhhc-cccceeEEEecCCc
Confidence 333 35679999999887 322 222222 58999999999997
No 35
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.41 E-value=7.3e-08 Score=87.67 Aligned_cols=84 Identities=20% Similarity=0.195 Sum_probs=53.5
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccCCCCCCHHHHH
Q 011699 307 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFR 386 (479)
Q Consensus 307 ~~L~~L~L~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~ 386 (479)
++|++|+|++ +.++...-.++. ....++.|.+..| ++. .+....++ .+..|+.|++.+|+ |+-....
T Consensus 274 ~~L~~lnlsn-N~i~~i~~~aFe-~~a~l~eL~L~~N-~l~-----~v~~~~f~----~ls~L~tL~L~~N~-it~~~~~ 340 (498)
T KOG4237|consen 274 PNLRKLNLSN-NKITRIEDGAFE-GAAELQELYLTRN-KLE-----FVSSGMFQ----GLSGLKTLSLYDNQ-ITTVAPG 340 (498)
T ss_pred ccceEeccCC-Cccchhhhhhhc-chhhhhhhhcCcc-hHH-----HHHHHhhh----ccccceeeeecCCe-eEEEecc
Confidence 7888888888 566643333322 4667888888777 432 22222222 57888999999888 6654444
Q ss_pred HhhccCCCCccEEEecCCC
Q 011699 387 WLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 387 ~l~~~~~~~L~~L~l~~~~ 405 (479)
.+.. ..+|..|.+-.|+
T Consensus 341 aF~~--~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 341 AFQT--LFSLSTLNLLSNP 357 (498)
T ss_pred cccc--cceeeeeehccCc
Confidence 4433 6688888877665
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.41 E-value=2.9e-08 Score=82.92 Aligned_cols=85 Identities=24% Similarity=0.251 Sum_probs=29.8
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCEEecCCCCCCCHHH-HHHHHhccccCCCCCCCCccEEEccCCCCCCH-HH
Q 011699 307 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTS-VIALASMLVDDDRWYGSSIRLLDLYNCGGITQ-LA 384 (479)
Q Consensus 307 ~~L~~L~L~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~-~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~-~~ 384 (479)
++|++|++++ +.++..+- .+...+|+|+.|.+++| .|.+.. +..+. .+++|+.|++.+|+ ++. ..
T Consensus 64 ~~L~~L~L~~-N~I~~i~~-~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~---------~l~~L~~L~L~~NP-v~~~~~ 130 (175)
T PF14580_consen 64 PRLKTLDLSN-NRISSISE-GLDKNLPNLQELYLSNN-KISDLNELEPLS---------SLPKLRVLSLEGNP-VCEKKN 130 (175)
T ss_dssp TT--EEE--S-S---S-CH-HHHHH-TT--EEE-TTS----SCCCCGGGG---------G-TT--EEE-TT-G-GGGSTT
T ss_pred hhhhhcccCC-CCCCcccc-chHHhCCcCCEEECcCC-cCCChHHhHHHH---------cCCCcceeeccCCc-ccchhh
Confidence 6667777766 45553321 12234667777777666 443321 12222 36677777777776 432 22
Q ss_pred HHHhhccCCCCccEEEecCC
Q 011699 385 FRWLKKPYFPRLRWLGVTGS 404 (479)
Q Consensus 385 ~~~l~~~~~~~L~~L~l~~~ 404 (479)
.+...-..+|+|+.||-...
T Consensus 131 YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 131 YRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp HHHHHHHH-TT-SEETTEET
T ss_pred HHHHHHHHcChhheeCCEEc
Confidence 22222223677777765443
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.30 E-value=4.6e-07 Score=75.77 Aligned_cols=128 Identities=18% Similarity=0.219 Sum_probs=32.7
Q ss_pred CCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHhhCCCCCC
Q 011699 152 SMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIK 231 (479)
Q Consensus 152 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 231 (479)
++++|+|.+ +.++. ++.+...+.+|+.|++++|....-.++. .+++|+.|++++ +.++..+-.....+|+|+
T Consensus 20 ~~~~L~L~~-n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~----~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 20 KLRELNLRG-NQIST--IENLGATLDKLEVLDLSNNQITKLEGLP----GLPRLKTLDLSN-NRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT--------TT--EEE--S-S---S-CHHHHHH-TT--
T ss_pred ccccccccc-ccccc--ccchhhhhcCCCEEECCCCCCccccCcc----ChhhhhhcccCC-CCCCccccchHHhCCcCC
Confidence 455555555 23332 1222223445555555554422111111 234555555555 344332111112456666
Q ss_pred EEecCCCCCCCh-HHHHhhhcCCCCcEEEccCCCCchHH-HHHHHhhcCCCccEEecCC
Q 011699 232 VLDLRDCKNLGD-EALRAISSLPQLKILLLDGSDISDVG-VSYLRLTVITSLVKLSLRG 288 (479)
Q Consensus 232 ~L~l~~~~~l~~-~~~~~l~~l~~L~~L~l~~~~l~~~~-l~~l~~~~~~~L~~L~l~~ 288 (479)
.|.++++ .+.+ ..+..++.+++|+.|++.+|.+++.. .....-+.+|+|+.|+-..
T Consensus 92 ~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 92 ELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred EEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 6666553 3332 22344556666666666666554321 1111111456666665443
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.21 E-value=8.9e-07 Score=77.84 Aligned_cols=145 Identities=23% Similarity=0.198 Sum_probs=94.4
Q ss_pred cCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHh
Q 011699 251 SLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLAT 330 (479)
Q Consensus 251 ~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~ 330 (479)
....|+++++++|.|+... .-.. -.|.++.|+++.+.-..-..+..+ ++|+.|+|++ +.++... ..-.
T Consensus 282 TWq~LtelDLS~N~I~~iD--ESvK-L~Pkir~L~lS~N~i~~v~nLa~L------~~L~~LDLS~-N~Ls~~~--Gwh~ 349 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQID--ESVK-LAPKLRRLILSQNRIRTVQNLAEL------PQLQLLDLSG-NLLAECV--GWHL 349 (490)
T ss_pred hHhhhhhccccccchhhhh--hhhh-hccceeEEeccccceeeehhhhhc------ccceEeeccc-chhHhhh--hhHh
Confidence 3467899999999765422 1122 478899999998543334445555 8999999999 4554221 1122
Q ss_pred cCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccCCCCCCH-HHHHHhhccCCCCccEEEecCCC----
Q 011699 331 CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQ-LAFRWLKKPYFPRLRWLGVTGSV---- 405 (479)
Q Consensus 331 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~-~~~~~l~~~~~~~L~~L~l~~~~---- 405 (479)
.+-+++.|.+.+| .+.+ +..+. .+-+|..|++++|+ |.. ..+..+. .+|.|+.+.+.+|+
T Consensus 350 KLGNIKtL~La~N-~iE~--LSGL~---------KLYSLvnLDl~~N~-Ie~ldeV~~IG--~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 350 KLGNIKTLKLAQN-KIET--LSGLR---------KLYSLVNLDLSSNQ-IEELDEVNHIG--NLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhcCEeeeehhhh-hHhh--hhhhH---------hhhhheeccccccc-hhhHHHhcccc--cccHHHHHhhcCCCcccc
Confidence 4678999999988 4332 22222 24569999999998 543 4445554 49999999999998
Q ss_pred ---CHHHHHHHHhcCCCcee
Q 011699 406 ---NRDILDALARSRPFLNV 422 (479)
Q Consensus 406 ---~~~~~~~~~~~~p~l~~ 422 (479)
..+.++.+.++...+..
T Consensus 415 vdYRTKVLa~FGERaSE~~L 434 (490)
T KOG1259|consen 415 VDYRTKVLARFGERASEISL 434 (490)
T ss_pred chHHHHHHHHHhhhhhheec
Confidence 24455556555554443
No 39
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=2.1e-06 Score=71.30 Aligned_cols=102 Identities=24% Similarity=0.320 Sum_probs=54.2
Q ss_pred ccEEecCCCCCCCHHHHHHHHhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccCCCCCCHHHHHHh
Q 011699 309 LQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWL 388 (479)
Q Consensus 309 L~~L~L~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l 388 (479)
++.++-+++ .|..+|+..+. .++.++.|.+.+|..+.|.++..+.. ..++|+.|+|++|+.||+.++..+
T Consensus 103 IeaVDAsds-~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~--------~~~~L~~L~lsgC~rIT~~GL~~L 172 (221)
T KOG3864|consen 103 IEAVDASDS-SIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGG--------LAPSLQDLDLSGCPRITDGGLACL 172 (221)
T ss_pred EEEEecCCc-hHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcc--------cccchheeeccCCCeechhHHHHH
Confidence 455555552 44455554443 35555555666665556655555555 445566666666666666666655
Q ss_pred hccCCCCccEEEecCCC---CHH-HHHHHHhcCCCcee
Q 011699 389 KKPYFPRLRWLGVTGSV---NRD-ILDALARSRPFLNV 422 (479)
Q Consensus 389 ~~~~~~~L~~L~l~~~~---~~~-~~~~~~~~~p~l~~ 422 (479)
.+ +++|+.|.+.+-+ ..+ +...+....|+..+
T Consensus 173 ~~--lknLr~L~l~~l~~v~~~e~~~~~Le~aLP~c~I 208 (221)
T KOG3864|consen 173 LK--LKNLRRLHLYDLPYVANLELVQRQLEEALPKCDI 208 (221)
T ss_pred HH--hhhhHHHHhcCchhhhchHHHHHHHHHhCcccce
Confidence 54 5666666555543 222 23334445565544
No 40
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=5.8e-06 Score=72.81 Aligned_cols=194 Identities=16% Similarity=0.142 Sum_probs=117.0
Q ss_pred hHHHHHHHHhCCCCCEEEEcCCcccCHH-HHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCCH
Q 011699 140 DLGILLMADKCASMESICLGGFCRVTDT-GFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTN 218 (479)
Q Consensus 140 ~~~l~~l~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 218 (479)
...+..+...++.++.++|.+ +.+.+. .+..+.+.+|.|+.|+++.+...++. ........+|+.|.+.+ ..+.-
T Consensus 60 ~gd~~~~~~~~~~v~elDL~~-N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I--~~lp~p~~nl~~lVLNg-T~L~w 135 (418)
T KOG2982|consen 60 EGDVMLFGSSVTDVKELDLTG-NLISDWSEIGAILEQLPALTTLNLSCNSLSSDI--KSLPLPLKNLRVLVLNG-TGLSW 135 (418)
T ss_pred chhHHHHHHHhhhhhhhhccc-chhccHHHHHHHHhcCccceEeeccCCcCCCcc--ccCcccccceEEEEEcC-CCCCh
Confidence 344666778899999999999 567653 46778899999999999987643322 22212345899999988 45433
Q ss_pred HHH-HHhhCCCCCCEEecCCCCC----CChHHHHhhhcCCCCcEEEccCCCCch-HHHHHHHhhcCCCccEEecCCCCCC
Q 011699 219 HAI-KSLASNTGIKVLDLRDCKN----LGDEALRAISSLPQLKILLLDGSDISD-VGVSYLRLTVITSLVKLSLRGCKRL 292 (479)
Q Consensus 219 ~~~-~~l~~~~~L~~L~l~~~~~----l~~~~~~~l~~l~~L~~L~l~~~~l~~-~~l~~l~~~~~~~L~~L~l~~~~~l 292 (479)
... ..+..+|.++.|.++.++. +.+..... -.+.+++|++..|.... .....+.+ .+|++..+-+..|+ +
T Consensus 136 ~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~--~s~~v~tlh~~~c~~~~w~~~~~l~r-~Fpnv~sv~v~e~P-l 211 (418)
T KOG2982|consen 136 TQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED--WSTEVLTLHQLPCLEQLWLNKNKLSR-IFPNVNSVFVCEGP-L 211 (418)
T ss_pred hhhhhhhhcchhhhhhhhccchhhhhccccccccc--cchhhhhhhcCCcHHHHHHHHHhHHh-hcccchheeeecCc-c
Confidence 222 2344678888888876411 11111111 12356666666653221 11223444 67888888887765 2
Q ss_pred CHHHHHHHhccCCCCCccEEecCCCCCCC-HHHHHHHHhcCCCCCEEecCCCCC
Q 011699 293 TDKCISALFDGTSKLQLQELDLSNLPHLS-DNGILTLATCRVPISELRVRQCPL 345 (479)
Q Consensus 293 ~~~~~~~l~~~~~~~~L~~L~L~~~~~i~-~~~~~~l~~~~~~L~~L~l~~~~~ 345 (479)
.+..-..-+. ++|.+-.|+|+. +++. +..+.++. .+|.|..|+++++|-
T Consensus 212 K~~s~ek~se--~~p~~~~LnL~~-~~idswasvD~Ln-~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 212 KTESSEKGSE--PFPSLSCLNLGA-NNIDSWASVDALN-GFPQLVDLRVSENPL 261 (418)
T ss_pred cchhhcccCC--CCCcchhhhhcc-cccccHHHHHHHc-CCchhheeeccCCcc
Confidence 2221111111 227777888887 4554 55555555 588888888888864
No 41
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=3.3e-06 Score=70.17 Aligned_cols=89 Identities=29% Similarity=0.437 Sum_probs=65.2
Q ss_pred CCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCC
Q 011699 254 QLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRV 333 (479)
Q Consensus 254 ~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~~~~ 333 (479)
.++.++-+++.|...|+.++.. ++.++.|.+..|..+.+.++..+... .++|+.|+|++|+.|++.++..+.. ++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~--l~~i~~l~l~~ck~~dD~~L~~l~~~--~~~L~~L~lsgC~rIT~~GL~~L~~-lk 176 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRD--LRSIKSLSLANCKYFDDWCLERLGGL--APSLQDLDLSGCPRITDGGLACLLK-LK 176 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhc--cchhhhheeccccchhhHHHHHhccc--ccchheeeccCCCeechhHHHHHHH-hh
Confidence 4667777777888888887776 78888888888877777777777653 3778888888777777777776664 77
Q ss_pred CCCEEecCCCCCCC
Q 011699 334 PISELRVRQCPLIG 347 (479)
Q Consensus 334 ~L~~L~l~~~~~l~ 347 (479)
+|+.|.+.+-+.+.
T Consensus 177 nLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 177 NLRRLHLYDLPYVA 190 (221)
T ss_pred hhHHHHhcCchhhh
Confidence 77777776655443
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.05 E-value=1.8e-06 Score=75.93 Aligned_cols=126 Identities=17% Similarity=0.160 Sum_probs=55.3
Q ss_pred CCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCC
Q 011699 227 NTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSK 306 (479)
Q Consensus 227 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 306 (479)
++.|+.++++++ .++. .-.++.-.|.++.|++++|.+...+- +.. +++|+.|+++++..-.-+|+.. ++
T Consensus 283 Wq~LtelDLS~N-~I~~-iDESvKL~Pkir~L~lS~N~i~~v~n--La~--L~~L~~LDLS~N~Ls~~~Gwh~-----KL 351 (490)
T KOG1259|consen 283 WQELTELDLSGN-LITQ-IDESVKLAPKLRRLILSQNRIRTVQN--LAE--LPQLQLLDLSGNLLAECVGWHL-----KL 351 (490)
T ss_pred Hhhhhhcccccc-chhh-hhhhhhhccceeEEeccccceeeehh--hhh--cccceEeecccchhHhhhhhHh-----hh
Confidence 445555555552 2221 11223344556666666655443221 222 5556666665532111222221 11
Q ss_pred CCccEEecCCCCCCCH-HHHHHHHhcCCCCCEEecCCCCCCCHHH-HHHHHhccccCCCCCCCCccEEEccCCC
Q 011699 307 LQLQELDLSNLPHLSD-NGILTLATCRVPISELRVRQCPLIGDTS-VIALASMLVDDDRWYGSSIRLLDLYNCG 378 (479)
Q Consensus 307 ~~L~~L~L~~~~~i~~-~~~~~l~~~~~~L~~L~l~~~~~l~~~~-~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 378 (479)
.++++|.|+. +.+.+ .|+. .+-+|..|++++| .|.... +..+. .+|.|+.+.+.+|+
T Consensus 352 GNIKtL~La~-N~iE~LSGL~----KLYSLvnLDl~~N-~Ie~ldeV~~IG---------~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 352 GNIKTLKLAQ-NKIETLSGLR----KLYSLVNLDLSSN-QIEELDEVNHIG---------NLPCLETLRLTGNP 410 (490)
T ss_pred cCEeeeehhh-hhHhhhhhhH----hhhhheecccccc-chhhHHHhcccc---------cccHHHHHhhcCCC
Confidence 4566666655 23321 1222 2344566666665 333221 11222 35666666666665
No 43
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.80 E-value=2.1e-05 Score=77.06 Aligned_cols=315 Identities=22% Similarity=0.270 Sum_probs=168.6
Q ss_pred CcEEEeecCccChhHHHHHHH---cCCCccEEeccCCCCCCCccccccchHHHHhhh----cC-CCccEEeccccccccc
Q 011699 61 IQKLCLSVDYITDAMVGTISQ---GLVSLTHLDLRDAPLIEPRITFDLTNSGLQQIN----QH-GKLKHLSLIRSQEFLI 132 (479)
Q Consensus 61 L~~L~L~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~----~~-~~L~~L~l~~~~~~~~ 132 (479)
+.+|.|..+.+.+.....+.+ ..+.|+.|++++|. +.+.+...+. .. ..|++|.+..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~---------l~~~g~~~l~~~l~~~~~~l~~L~l~~------ 153 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNN---------LGDEGARLLCEGLRLPQCLLQTLELVS------ 153 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCC---------CccHhHHHHHhhcccchHHHHHHHhhc------
Confidence 788888877777777666666 55688999999984 5566666554 22 3466666643
Q ss_pred ccccccchHHHHHH---HHhCCCCCEEEEcCCcccCHHHHHHHHH-------hCCCCceEEecCCCCCCHH--HHHHHHh
Q 011699 133 TYFRRVNDLGILLM---ADKCASMESICLGGFCRVTDTGFKTILH-------SCSNLYKLRVSHGTQLTDL--VFHDISA 200 (479)
Q Consensus 133 ~~~~~~~~~~l~~l---~~~~~~L~~L~l~~~~~l~~~~~~~l~~-------~~~~L~~L~l~~~~~~~~~--~~~~~~~ 200 (479)
..++..+...+ ...+..++.++++.+ .+...+...+.+ ...++++|.+.+|...... .+.....
T Consensus 154 ---c~l~~~g~~~l~~~L~~~~~l~~l~l~~n-~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~ 229 (478)
T KOG4308|consen 154 ---CSLTSEGAAPLAAVLEKNEHLTELDLSLN-GLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLA 229 (478)
T ss_pred ---ccccccchHHHHHHHhcccchhHHHHHhc-ccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHh
Confidence 22333222222 223667777888774 443333222222 2446777888776543221 1222223
Q ss_pred cCCC-ccEEEcCCCCCCCHHHHHHhh----CC-CCCCEEecCCCCCCChHHHHhh----hcCCCCcEEEccCCCCchHHH
Q 011699 201 TSLS-LTHVCLRWCNLLTNHAIKSLA----SN-TGIKVLDLRDCKNLGDEALRAI----SSLPQLKILLLDGSDISDVGV 270 (479)
Q Consensus 201 ~~~~-L~~L~l~~~~~~~~~~~~~l~----~~-~~L~~L~l~~~~~l~~~~~~~l----~~l~~L~~L~l~~~~l~~~~l 270 (479)
..+. +.+|++.. +.+.+.++..+. .+ +.++.++++.| .++..+...+ ..++.++.+.+..|.+.+.+.
T Consensus 230 ~~~~~~~el~l~~-n~l~d~g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~ 307 (478)
T KOG4308|consen 230 SGESLLRELDLAS-NKLGDVGVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGV 307 (478)
T ss_pred ccchhhHHHHHHh-cCcchHHHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCccccHHH
Confidence 3334 66677776 566666655443 23 56678888775 5555554443 356788888888887777665
Q ss_pred HHHHhh--cCCCccEEecCCCCCCCHHHHHHHhccCCCCCccE-EecCCCCCCCHHHHHHHHhc----CCCCCEEecCCC
Q 011699 271 SYLRLT--VITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQE-LDLSNLPHLSDNGILTLATC----RVPISELRVRQC 343 (479)
Q Consensus 271 ~~l~~~--~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~-L~L~~~~~i~~~~~~~l~~~----~~~L~~L~l~~~ 343 (479)
..+... ....+..+.+.++...+..+...+........+.. ..+++ +...+.....+... -+.+..+++..+
T Consensus 308 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 386 (478)
T KOG4308|consen 308 ELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGISG-NRVGEEGLALLVLAKSNPKSELLRLSLNSQ 386 (478)
T ss_pred HHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhhhHHHHhhh-ccchHHHHHHHhhhhcccCcccchhhhhcc
Confidence 544441 23445555555443333222111111100022222 22333 34444444333221 123556666666
Q ss_pred CCCCHHHHHHHHhccccCCCCCCCCccEEEccCCCCCCHHHHHHhhc---cCCCCccEEEecCCC
Q 011699 344 PLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK---PYFPRLRWLGVTGSV 405 (479)
Q Consensus 344 ~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~---~~~~~L~~L~l~~~~ 405 (479)
.+...+...++.... ..+.++.++++.+. ..+.+...+.. ... .++.++++.++
T Consensus 387 -~~~~~~~~~l~~~~~-----~~~~l~~~~l~~n~-~~~~~~~~l~~~~~~~~-~~~~~~l~~~~ 443 (478)
T KOG4308|consen 387 -VIEGRGALRLAAQLA-----SNEKLEILDLSLNS-LHDEGAEVLTEQLSRNG-SLKALRLSRNP 443 (478)
T ss_pred -ccccHHHHHhhhhhh-----hcchhhhhhhhcCc-cchhhHHHHHHhhhhcc-cchhhhhccCh
Confidence 444444444444333 57788888888876 34333332222 134 78888887765
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.59 E-value=1.4e-05 Score=54.57 Aligned_cols=59 Identities=29% Similarity=0.347 Sum_probs=28.7
Q ss_pred CccEEEcCCCCCCCHHHHHHhhCCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCC
Q 011699 204 SLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSD 264 (479)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 264 (479)
+|++|+++++ .+...+...+..+++|++|++++ +.+.......+..+++|+.|++++|.
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4455555553 33333333344555555555554 24444444445555555555555543
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.57 E-value=3.5e-05 Score=81.09 Aligned_cols=236 Identities=16% Similarity=0.137 Sum_probs=109.4
Q ss_pred hCCCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHhhCCC
Q 011699 149 KCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNT 228 (479)
Q Consensus 149 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 228 (479)
.+++|++|-+......-......++..+|.|+.|++++|..+.. ++.....+-+|+.|++++ ..+...+ ..+..+.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~--LP~~I~~Li~LryL~L~~-t~I~~LP-~~l~~Lk 618 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK--LPSSIGELVHLRYLDLSD-TGISHLP-SGLGNLK 618 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc--CChHHhhhhhhhcccccC-CCccccc-hHHHHHH
Confidence 35667777776632101112233346678888888877554332 222333445777777777 3554332 2455677
Q ss_pred CCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCC--CchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCC
Q 011699 229 GIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSD--ISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSK 306 (479)
Q Consensus 229 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 306 (479)
.|.+|++..+..+... ......+++|+.|.+.... .+...+..+. .+.+|+.+.+..+....-..+..+.+-.
T Consensus 619 ~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~--~Le~L~~ls~~~~s~~~~e~l~~~~~L~-- 693 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELE--NLEHLENLSITISSVLLLEDLLGMTRLR-- 693 (889)
T ss_pred hhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhh--cccchhhheeecchhHhHhhhhhhHHHH--
Confidence 7777777664333222 2223347778877776542 2222233332 2555555555432210001111110000
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCC-CCCccEEEccCCCCCCHHHH
Q 011699 307 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWY-GSSIRLLDLYNCGGITQLAF 385 (479)
Q Consensus 307 ~~L~~L~L~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~-~~~L~~L~l~~c~~i~~~~~ 385 (479)
...+.+.+.+|... ........+.+|+.|.+.+| .+.+..+........ .. ++++..+.+.+|....+...
T Consensus 694 ~~~~~l~~~~~~~~---~~~~~~~~l~~L~~L~i~~~-~~~e~~~~~~~~~~~----~~~f~~l~~~~~~~~~~~r~l~~ 765 (889)
T KOG4658|consen 694 SLLQSLSIEGCSKR---TLISSLGSLGNLEELSILDC-GISEIVIEWEESLIV----LLCFPNLSKVSILNCHMLRDLTW 765 (889)
T ss_pred HHhHhhhhcccccc---eeecccccccCcceEEEEcC-CCchhhcccccccch----hhhHHHHHHHHhhccccccccch
Confidence 11122222221111 11111224667788888777 443322211100000 01 34555566666654443222
Q ss_pred HHhhccCCCCccEEEecCCC
Q 011699 386 RWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 386 ~~l~~~~~~~L~~L~l~~~~ 405 (479)
.. ..|+|+.|.+..|.
T Consensus 766 ~~----f~~~L~~l~l~~~~ 781 (889)
T KOG4658|consen 766 LL----FAPHLTSLSLVSCR 781 (889)
T ss_pred hh----ccCcccEEEEeccc
Confidence 22 36788888888776
No 46
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.57 E-value=9.5e-07 Score=71.20 Aligned_cols=148 Identities=24% Similarity=0.263 Sum_probs=63.4
Q ss_pred CCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHhhCCCCC
Q 011699 151 ASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGI 230 (479)
Q Consensus 151 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 230 (479)
++++.|.+++ +.++.. ...+ ..+.+|+.|++.++. +.+ +....+.+++|+.|+++- +.+.. ....++.+|.|
T Consensus 33 s~ITrLtLSH-NKl~~v-ppni-a~l~nlevln~~nnq-ie~--lp~~issl~klr~lnvgm-nrl~~-lprgfgs~p~l 104 (264)
T KOG0617|consen 33 SNITRLTLSH-NKLTVV-PPNI-AELKNLEVLNLSNNQ-IEE--LPTSISSLPKLRILNVGM-NRLNI-LPRGFGSFPAL 104 (264)
T ss_pred hhhhhhhccc-Cceeec-CCcH-HHhhhhhhhhcccch-hhh--cChhhhhchhhhheecch-hhhhc-CccccCCCchh
Confidence 3455566666 454432 1222 335566666665433 211 122233445555555543 22211 11234455666
Q ss_pred CEEecCCCCCCChHHH-HhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCC-HHHHHHHhccCCCCC
Q 011699 231 KVLDLRDCKNLGDEAL-RAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT-DKCISALFDGTSKLQ 308 (479)
Q Consensus 231 ~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~-~~~~~~l~~~~~~~~ 308 (479)
+.|+++.+ ++....+ ..+-.+..|+.|++++|.+.- ....+++ +.+|+.|.+.+...++ +..+..+ ..
T Consensus 105 evldltyn-nl~e~~lpgnff~m~tlralyl~dndfe~-lp~dvg~--lt~lqil~lrdndll~lpkeig~l------t~ 174 (264)
T KOG0617|consen 105 EVLDLTYN-NLNENSLPGNFFYMTTLRALYLGDNDFEI-LPPDVGK--LTNLQILSLRDNDLLSLPKEIGDL------TR 174 (264)
T ss_pred hhhhcccc-ccccccCCcchhHHHHHHHHHhcCCCccc-CChhhhh--hcceeEEeeccCchhhCcHHHHHH------HH
Confidence 66666553 3322211 122233445555555554331 1122333 4555555555543333 2333333 44
Q ss_pred ccEEecCC
Q 011699 309 LQELDLSN 316 (479)
Q Consensus 309 L~~L~L~~ 316 (479)
|++|++.+
T Consensus 175 lrelhiqg 182 (264)
T KOG0617|consen 175 LRELHIQG 182 (264)
T ss_pred HHHHhccc
Confidence 55555554
No 47
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.54 E-value=9.8e-05 Score=77.81 Aligned_cols=107 Identities=19% Similarity=0.173 Sum_probs=54.4
Q ss_pred CCCCcEEEeecCc--cChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccc
Q 011699 58 LPGIQKLCLSVDY--ITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYF 135 (479)
Q Consensus 58 ~~~L~~L~L~~~~--~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 135 (479)
+++|+.|-+..+. +... ...+...+|.|++||+++|..+.. -...|+.+-+|++|+++.
T Consensus 544 ~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~---------LP~~I~~Li~LryL~L~~--------- 604 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSK---------LPSSIGELVHLRYLDLSD--------- 604 (889)
T ss_pred CCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCc---------CChHHhhhhhhhcccccC---------
Confidence 4567777666543 2221 222234677777777777643211 122455666777777753
Q ss_pred cccchHHHHHHHHhCCCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCC
Q 011699 136 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHG 187 (479)
Q Consensus 136 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 187 (479)
..+. .++.-...+..|.+|++.....+... ..+...+++|+.|.+...
T Consensus 605 t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 605 TGIS--HLPSGLGNLKKLIYLNLEVTGRLESI--PGILLELQSLRVLRLPRS 652 (889)
T ss_pred CCcc--ccchHHHHHHhhheeccccccccccc--cchhhhcccccEEEeecc
Confidence 2222 11111233556777777664332222 233344677777776543
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.52 E-value=1.4e-05 Score=78.80 Aligned_cols=108 Identities=22% Similarity=0.221 Sum_probs=56.5
Q ss_pred HhCCCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHhhCC
Q 011699 148 DKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASN 227 (479)
Q Consensus 148 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 227 (479)
+-++.|+.|+|++ +.+..-. .++.|+.|++|++++|..-....+. ...| +|+.|.+.+ +.++ .+..+.++
T Consensus 184 qll~ale~LnLsh-Nk~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~--~~gc-~L~~L~lrn-N~l~--tL~gie~L 253 (1096)
T KOG1859|consen 184 QLLPALESLNLSH-NKFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLS--MVGC-KLQLLNLRN-NALT--TLRGIENL 253 (1096)
T ss_pred HHHHHhhhhccch-hhhhhhH---HHHhcccccccccccchhccccccc--hhhh-hheeeeecc-cHHH--hhhhHHhh
Confidence 3456677777777 4555432 3466777777777765521111011 1123 466666666 3332 23344466
Q ss_pred CCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCC
Q 011699 228 TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDI 265 (479)
Q Consensus 228 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l 265 (479)
.+|+.|+++.+--.....+..+..+..|+.|.|.+|.+
T Consensus 254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 66777777663222222334444555666666766643
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.48 E-value=2.9e-05 Score=52.94 Aligned_cols=59 Identities=22% Similarity=0.341 Sum_probs=43.4
Q ss_pred CCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCC
Q 011699 228 TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 289 (479)
Q Consensus 228 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~ 289 (479)
|+|++|++++| .+.......+..+++|+.|++++|.+.......+.. +++|+.|+++++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~--l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSN--LPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTT--STTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcC--CCCCCEEeCcCC
Confidence 57888888885 677666677778888888888888776544444443 778888888775
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.44 E-value=1.1e-05 Score=79.54 Aligned_cols=106 Identities=25% Similarity=0.220 Sum_probs=56.6
Q ss_pred CCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCC
Q 011699 226 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTS 305 (479)
Q Consensus 226 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 305 (479)
-++.|+.|+++.+ ++++. ..+..+++|++|+|++|.+.. ++.+...+| +|+.|.++++.--+-.++..+
T Consensus 185 ll~ale~LnLshN-k~~~v--~~Lr~l~~LkhLDlsyN~L~~--vp~l~~~gc-~L~~L~lrnN~l~tL~gie~L----- 253 (1096)
T KOG1859|consen 185 LLPALESLNLSHN-KFTKV--DNLRRLPKLKHLDLSYNCLRH--VPQLSMVGC-KLQLLNLRNNALTTLRGIENL----- 253 (1096)
T ss_pred HHHHhhhhccchh-hhhhh--HHHHhcccccccccccchhcc--ccccchhhh-hheeeeecccHHHhhhhHHhh-----
Confidence 4566777777763 44333 356677777777777775543 222222123 377777776432233455555
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEecCCCC
Q 011699 306 KLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCP 344 (479)
Q Consensus 306 ~~~L~~L~L~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 344 (479)
.+|+.||+++ +-+.+-.--...-.+..|+.|.|.+||
T Consensus 254 -ksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 254 -KSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred -hhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 6777777776 333321111111134456677777665
No 51
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.25 E-value=6.8e-05 Score=73.52 Aligned_cols=218 Identities=23% Similarity=0.223 Sum_probs=106.3
Q ss_pred CCEEEEcCCcccCHHHHHHHHHh---CCCCceEEecCCCCCCHHHHHHHHhcC----CCccEEEcCCCCCCCHHHHHH--
Q 011699 153 MESICLGGFCRVTDTGFKTILHS---CSNLYKLRVSHGTQLTDLVFHDISATS----LSLTHVCLRWCNLLTNHAIKS-- 223 (479)
Q Consensus 153 L~~L~l~~~~~l~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~~-- 223 (479)
+..|.+.+| .+.+.++..+.+. .+.|..|+++++.. .+.+...+.... ..|+.|.+..| .++..+...
T Consensus 89 l~~L~L~~~-~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l-~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~ 165 (478)
T KOG4308|consen 89 LLHLSLANN-RLGDRGAEELAQALKTLPTLGQLDLSGNNL-GDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLA 165 (478)
T ss_pred HHHhhhhhC-ccccchHHHHHHHhcccccHhHhhcccCCC-ccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHH
Confidence 666777774 5555555554443 35667777776553 344444443322 24555666665 233333222
Q ss_pred --hhCCCCCCEEecCCCCCCChHHHHhh--------hcCCCCcEEEccCCCCchHHHHHHHh--hcCCC-ccEEecCCCC
Q 011699 224 --LASNTGIKVLDLRDCKNLGDEALRAI--------SSLPQLKILLLDGSDISDVGVSYLRL--TVITS-LVKLSLRGCK 290 (479)
Q Consensus 224 --l~~~~~L~~L~l~~~~~l~~~~~~~l--------~~l~~L~~L~l~~~~l~~~~l~~l~~--~~~~~-L~~L~l~~~~ 290 (479)
+...+.++.++++.|. +...+...+ ....++++|++.+|.++......+.. ...++ +..|++.. +
T Consensus 166 ~~L~~~~~l~~l~l~~n~-l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~-n 243 (478)
T KOG4308|consen 166 AVLEKNEHLTELDLSLNG-LIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLAS-N 243 (478)
T ss_pred HHHhcccchhHHHHHhcc-cchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHh-c
Confidence 2245666666666542 222222111 13456666666666666555443333 01222 34455544 3
Q ss_pred CCCHHHHHHHhccCCC--CCccEEecCCCCCCCHHHHHH---HHhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCC
Q 011699 291 RLTDKCISALFDGTSK--LQLQELDLSNLPHLSDNGILT---LATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWY 365 (479)
Q Consensus 291 ~l~~~~~~~l~~~~~~--~~L~~L~L~~~~~i~~~~~~~---l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~ 365 (479)
.+.+.++..+...... +.+++++++.| .+++.+... ....++.++.+.+..+ .+++.+...+...+. .
T Consensus 244 ~l~d~g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n-~l~~~~~~~~~~~l~-----~ 316 (478)
T KOG4308|consen 244 KLGDVGVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNN-PLTDYGVELLLEALE-----R 316 (478)
T ss_pred CcchHHHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccC-ccccHHHHHHHHHhh-----h
Confidence 4555555544433211 34566666663 444333332 2334456666666655 555555555554443 2
Q ss_pred CCCccEEEccCCCCCCH
Q 011699 366 GSSIRLLDLYNCGGITQ 382 (479)
Q Consensus 366 ~~~L~~L~l~~c~~i~~ 382 (479)
...+..+-+.++...+.
T Consensus 317 ~~~~~~~~l~~~~~~~~ 333 (478)
T KOG4308|consen 317 KTPLLHLVLGGTGKGTR 333 (478)
T ss_pred cccchhhhccccCccch
Confidence 34455555554443444
No 52
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.21 E-value=1.3e-06 Score=70.41 Aligned_cols=37 Identities=32% Similarity=0.503 Sum_probs=16.1
Q ss_pred hCCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCC
Q 011699 225 ASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGS 263 (479)
Q Consensus 225 ~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 263 (479)
+.+.+|+.|.+++ +.+.. ....++.+++|+.|+++-|
T Consensus 53 a~l~nlevln~~n-nqie~-lp~~issl~klr~lnvgmn 89 (264)
T KOG0617|consen 53 AELKNLEVLNLSN-NQIEE-LPTSISSLPKLRILNVGMN 89 (264)
T ss_pred HHhhhhhhhhccc-chhhh-cChhhhhchhhhheecchh
Confidence 3444555555544 23221 1223444555555555444
No 53
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.89 E-value=0.00037 Score=60.75 Aligned_cols=109 Identities=21% Similarity=0.241 Sum_probs=58.2
Q ss_pred CCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEecCCCCCCCH-HHHHHHHh
Q 011699 278 ITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGD-TSVIALAS 356 (479)
Q Consensus 278 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~-~~~~~l~~ 356 (479)
+..|+.|++.++...+-.++. .+|+|++|.++........++..++..+|+|++|.+++| ++.+ ..+..+.
T Consensus 42 ~~~le~ls~~n~gltt~~~~P------~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~- 113 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFP------KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLK- 113 (260)
T ss_pred ccchhhhhhhccceeecccCC------CcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhh-
Confidence 455666665554332222222 337788888876322334455556666788888888877 5553 2222333
Q ss_pred ccccCCCCCCCCccEEEccCCCCCC--HHHHHHhhccCCCCccEEEecCC
Q 011699 357 MLVDDDRWYGSSIRLLDLYNCGGIT--QLAFRWLKKPYFPRLRWLGVTGS 404 (479)
Q Consensus 357 ~~~~~~~~~~~~L~~L~l~~c~~i~--~~~~~~l~~~~~~~L~~L~l~~~ 404 (479)
.+++|..|++.+|.... +.--..+. .+|+|+.|+-..+
T Consensus 114 --------~l~nL~~Ldl~n~~~~~l~dyre~vf~--ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 114 --------ELENLKSLDLFNCSVTNLDDYREKVFL--LLPSLKYLDGCDV 153 (260)
T ss_pred --------hhcchhhhhcccCCccccccHHHHHHH--Hhhhhcccccccc
Confidence 36667777777776221 11111222 2566666665443
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.74 E-value=9.9e-05 Score=64.23 Aligned_cols=63 Identities=22% Similarity=0.258 Sum_probs=27.0
Q ss_pred CCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEecCCC
Q 011699 278 ITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQC 343 (479)
Q Consensus 278 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 343 (479)
+|+|+.|.++....-...++..++..+ |+|+++++++ +.+.+..-..-...+++|..|++.+|
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~--P~l~~l~ls~-Nki~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKA--PNLKVLNLSG-NKIKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhC--CceeEEeecC-CccccccccchhhhhcchhhhhcccC
Confidence 445555555543222233333444333 5555555555 34442111111223445555555555
No 55
>PLN03150 hypothetical protein; Provisional
Probab=96.60 E-value=0.0042 Score=63.98 Aligned_cols=105 Identities=24% Similarity=0.175 Sum_probs=64.5
Q ss_pred CCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCC---HHHHHHHhccCCC
Q 011699 230 IKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT---DKCISALFDGTSK 306 (479)
Q Consensus 230 L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~---~~~~~~l~~~~~~ 306 (479)
++.|+|+++ .+.......+..+++|+.|+|++|.+.......+.. +++|+.|+++++. ++ +..+..+
T Consensus 420 v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~--l~~L~~LdLs~N~-lsg~iP~~l~~L------ 489 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS--ITSLEVLDLSYNS-FNGSIPESLGQL------ 489 (623)
T ss_pred EEEEECCCC-CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhC--CCCCCEEECCCCC-CCCCCchHHhcC------
Confidence 667777774 555444556777888888888888776443334444 7888888888753 33 2333333
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCEEecCCCCC
Q 011699 307 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPL 345 (479)
Q Consensus 307 ~~L~~L~L~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~ 345 (479)
++|+.|+|+++ .++......+.....++..+.+.+|+.
T Consensus 490 ~~L~~L~Ls~N-~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 490 TSLRILNLNGN-SLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCCCEEECcCC-cccccCChHHhhccccCceEEecCCcc
Confidence 78888888874 454222222322334567777777743
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.58 E-value=0.0064 Score=57.81 Aligned_cols=57 Identities=11% Similarity=0.140 Sum_probs=28.2
Q ss_pred CCCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCC
Q 011699 150 CASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLL 216 (479)
Q Consensus 150 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 216 (479)
|++++.|++++| .+.... ...++|++|.+.+|..+....- ...++|+.|.+++|..+
T Consensus 51 ~~~l~~L~Is~c-~L~sLP-----~LP~sLtsL~Lsnc~nLtsLP~----~LP~nLe~L~Ls~Cs~L 107 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLP-----VLPNELTEITIENCNNLTTLPG----SIPEGLEKLTVCHCPEI 107 (426)
T ss_pred hcCCCEEEeCCC-CCcccC-----CCCCCCcEEEccCCCCcccCCc----hhhhhhhheEccCcccc
Confidence 566777777775 443321 1123566666666554322110 01235666666665443
No 57
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.55 E-value=0.0035 Score=34.01 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=10.3
Q ss_pred CCCCEEecCCCCCCCHHHHHHH
Q 011699 333 VPISELRVRQCPLIGDTSVIAL 354 (479)
Q Consensus 333 ~~L~~L~l~~~~~l~~~~~~~l 354 (479)
++|+.|+|++|+.++|.++..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 4444444444444444444444
No 58
>PLN03150 hypothetical protein; Provisional
Probab=96.55 E-value=0.0051 Score=63.33 Aligned_cols=106 Identities=15% Similarity=0.132 Sum_probs=69.4
Q ss_pred CCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCC---HHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHh
Q 011699 254 QLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT---DKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLAT 330 (479)
Q Consensus 254 ~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~---~~~~~~l~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~ 330 (479)
.++.|+|+++.+.......+.. +++|+.|+++++. +. +..+..+ ++|+.|+|+++ .++......+.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~--L~~L~~L~Ls~N~-l~g~iP~~~~~l------~~L~~LdLs~N-~lsg~iP~~l~- 487 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISK--LRHLQSINLSGNS-IRGNIPPSLGSI------TSLEVLDLSYN-SFNGSIPESLG- 487 (623)
T ss_pred EEEEEECCCCCccccCCHHHhC--CCCCCEEECCCCc-ccCcCChHHhCC------CCCCEEECCCC-CCCCCCchHHh-
Confidence 4788999998776544445555 8999999999854 33 2223323 89999999984 65532222232
Q ss_pred cCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccCCCC
Q 011699 331 CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGG 379 (479)
Q Consensus 331 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 379 (479)
.+++|+.|++++| .++......+.. ...++..+++.+|..
T Consensus 488 ~L~~L~~L~Ls~N-~l~g~iP~~l~~--------~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 488 QLTSLRILNLNGN-SLSGRVPAALGG--------RLLHRASFNFTDNAG 527 (623)
T ss_pred cCCCCCEEECcCC-cccccCChHHhh--------ccccCceEEecCCcc
Confidence 6899999999998 555443333333 234567788887764
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.31 E-value=0.0071 Score=37.69 Aligned_cols=38 Identities=34% Similarity=0.506 Sum_probs=20.6
Q ss_pred CCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCch
Q 011699 228 TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISD 267 (479)
Q Consensus 228 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~ 267 (479)
++|++|+++++ .+++... .++++++|+.|++++|.+++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~-~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPP-ELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSS-S-SSHGG-HGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCC-CCcccCc-hHhCCCCCCEEEecCCCCCC
Confidence 35666666663 4543321 25666666666666666553
No 60
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.30 E-value=0.0048 Score=33.48 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=22.1
Q ss_pred CCCccEEEccCCCCCCHHHHHHhhc
Q 011699 366 GSSIRLLDLYNCGGITQLAFRWLKK 390 (479)
Q Consensus 366 ~~~L~~L~l~~c~~i~~~~~~~l~~ 390 (479)
|++|+.|+|++|+.+++.++..+..
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 5789999999999999999988754
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.15 E-value=0.0013 Score=57.78 Aligned_cols=103 Identities=21% Similarity=0.243 Sum_probs=52.6
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccc
Q 011699 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 137 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 137 (479)
+.+.+.|++.++.++|..+ .+.+|.|++|.|+-|+ |+ .+..+..|.+|+.|.|.. +.
T Consensus 18 l~~vkKLNcwg~~L~DIsi---c~kMp~lEVLsLSvNk---------Is--sL~pl~rCtrLkElYLRk---------N~ 74 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI---CEKMPLLEVLSLSVNK---------IS--SLAPLQRCTRLKELYLRK---------NC 74 (388)
T ss_pred HHHhhhhcccCCCccHHHH---HHhcccceeEEeeccc---------cc--cchhHHHHHHHHHHHHHh---------cc
Confidence 4456666666666666322 3466777777776653 22 244455666666666643 22
Q ss_pred cchHHHHHHHHhCCCCCEEEEcCCcccCHHH---HHHHHHhCCCCceEE
Q 011699 138 VNDLGILLMADKCASMESICLGGFCRVTDTG---FKTILHSCSNLYKLR 183 (479)
Q Consensus 138 ~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~---~~~l~~~~~~L~~L~ 183 (479)
|.+-.-....+.+|+|+.|.|..++.....+ -...+..+|+|+.|+
T Consensus 75 I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 75 IESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 2222222223456666666665533322221 122345566666665
No 62
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.11 E-value=0.0048 Score=60.15 Aligned_cols=172 Identities=25% Similarity=0.310 Sum_probs=96.2
Q ss_pred cCCCccEEeccCCCCCCCccccccchHHHHhh-hcC-CCccEEecccccccccccccccchHHHHHHHHhCCCCCEEEEc
Q 011699 82 GLVSLTHLDLRDAPLIEPRITFDLTNSGLQQI-NQH-GKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLG 159 (479)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l-~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~ 159 (479)
.++.++.|++..+. ++. ++.. ... ++|+.|+++. ..+... ..-...+++|+.|+++
T Consensus 114 ~~~~l~~L~l~~n~---------i~~--i~~~~~~~~~nL~~L~l~~---------N~i~~l--~~~~~~l~~L~~L~l~ 171 (394)
T COG4886 114 ELTNLTSLDLDNNN---------ITD--IPPLIGLLKSNLKELDLSD---------NKIESL--PSPLRNLPNLKNLDLS 171 (394)
T ss_pred cccceeEEecCCcc---------ccc--Cccccccchhhcccccccc---------cchhhh--hhhhhccccccccccC
Confidence 45678888887764 222 2222 223 2677777753 222211 0112457888888888
Q ss_pred CCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHhhCCCCCCEEecCCCC
Q 011699 160 GFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCK 239 (479)
Q Consensus 160 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 239 (479)
++ .+.+... .....+.|+.|+++++.. ... .........|++|.+++...+. ....+..+.++..+.+.++
T Consensus 172 ~N-~l~~l~~--~~~~~~~L~~L~ls~N~i-~~l--~~~~~~~~~L~~l~~~~N~~~~--~~~~~~~~~~l~~l~l~~n- 242 (394)
T COG4886 172 FN-DLSDLPK--LLSNLSNLNNLDLSGNKI-SDL--PPEIELLSALEELDLSNNSIIE--LLSSLSNLKNLSGLELSNN- 242 (394)
T ss_pred Cc-hhhhhhh--hhhhhhhhhheeccCCcc-ccC--chhhhhhhhhhhhhhcCCccee--cchhhhhcccccccccCCc-
Confidence 83 5554422 112567888888877653 111 1111233357778777732221 1223446666666665553
Q ss_pred CCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCC
Q 011699 240 NLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 289 (479)
Q Consensus 240 ~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~ 289 (479)
.+.+. ...+..+++++.|++++|.+++... +.. ..+++.|++++.
T Consensus 243 ~~~~~-~~~~~~l~~l~~L~~s~n~i~~i~~--~~~--~~~l~~L~~s~n 287 (394)
T COG4886 243 KLEDL-PESIGNLSNLETLDLSNNQISSISS--LGS--LTNLRELDLSGN 287 (394)
T ss_pred eeeec-cchhccccccceecccccccccccc--ccc--cCccCEEeccCc
Confidence 33221 3455677778888888887776443 333 778888888774
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.09 E-value=0.014 Score=55.52 Aligned_cols=139 Identities=16% Similarity=0.196 Sum_probs=83.1
Q ss_pred hcCCCccEEEcCCCCCCCHHHHHHhhCCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCC-CCchHHHHHHHhhcC
Q 011699 200 ATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGS-DISDVGVSYLRLTVI 278 (479)
Q Consensus 200 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~-~l~~~~l~~l~~~~~ 278 (479)
..+++++.|++++| .+...+ . -.++|+.|.+++|..++... ..+ .++|+.|++++| .+.. ..
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP--~--LP~sLtsL~Lsnc~nLtsLP-~~L--P~nLe~L~Ls~Cs~L~s---------LP 111 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLP--V--LPNELTEITIENCNNLTTLP-GSI--PEGLEKLTVCHCPEISG---------LP 111 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccC--C--CCCCCcEEEccCCCCcccCC-chh--hhhhhheEccCcccccc---------cc
Confidence 34689999999998 554433 1 23479999999987764322 112 258999999988 4431 23
Q ss_pred CCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEecCCCCCCCHHHHHHHHhcc
Q 011699 279 TSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASML 358 (479)
Q Consensus 279 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 358 (479)
++|+.|.+.+ .... .+..+. ++|+.|.+.+........+.. ...++|+.|.+++|..+. +...
T Consensus 112 ~sLe~L~L~~-n~~~--~L~~LP-----ssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~------LP~~- 174 (426)
T PRK15386 112 ESVRSLEIKG-SATD--SIKNVP-----NGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNII------LPEK- 174 (426)
T ss_pred cccceEEeCC-CCCc--ccccCc-----chHhheecccccccccccccc--ccCCcccEEEecCCCccc------Cccc-
Confidence 5688888864 2222 123332 678888886532111111110 112589999999995431 1111
Q ss_pred ccCCCCCCCCccEEEccCCC
Q 011699 359 VDDDRWYGSSIRLLDLYNCG 378 (479)
Q Consensus 359 ~~~~~~~~~~L~~L~l~~c~ 378 (479)
-..+|+.|+++.+.
T Consensus 175 ------LP~SLk~L~ls~n~ 188 (426)
T PRK15386 175 ------LPESLQSITLHIEQ 188 (426)
T ss_pred ------ccccCcEEEecccc
Confidence 23579999988753
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.03 E-value=0.0044 Score=52.03 Aligned_cols=86 Identities=20% Similarity=0.171 Sum_probs=50.7
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCEEecCCCCCCCHHH-HHHHHhccccCCCCCCCCccEEEccCCCCCCHH-H
Q 011699 307 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTS-VIALASMLVDDDRWYGSSIRLLDLYNCGGITQL-A 384 (479)
Q Consensus 307 ~~L~~L~L~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~-~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~-~ 384 (479)
+.|.+|.+++ +.|+...-. +...+|+|..|.+.+| .+...+ +..++ .||+|++|.+-+++ ++.. .
T Consensus 64 ~rL~tLll~n-NrIt~I~p~-L~~~~p~l~~L~LtnN-si~~l~dl~pLa---------~~p~L~~Ltll~Np-v~~k~~ 130 (233)
T KOG1644|consen 64 PRLHTLLLNN-NRITRIDPD-LDTFLPNLKTLILTNN-SIQELGDLDPLA---------SCPKLEYLTLLGNP-VEHKKN 130 (233)
T ss_pred cccceEEecC-Ccceeeccc-hhhhccccceEEecCc-chhhhhhcchhc---------cCCccceeeecCCc-hhcccC
Confidence 6777777777 455532111 2234677888888777 444332 33333 48888888888887 4432 2
Q ss_pred HHHhhccCCCCccEEEecCCC
Q 011699 385 FRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 385 ~~~l~~~~~~~L~~L~l~~~~ 405 (479)
.....--.+|+|+.|++++..
T Consensus 131 YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 131 YRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ceeEEEEecCcceEeehhhhh
Confidence 221111137888888888765
No 65
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.84 E-value=0.0091 Score=58.17 Aligned_cols=60 Identities=32% Similarity=0.338 Sum_probs=27.8
Q ss_pred CccEEEcCCCCCCCHHHHHHhhCCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCch
Q 011699 204 SLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISD 267 (479)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~ 267 (479)
+|+.|++++ +.+.... ..+..+++|+.|+++++ .+.+... .....++|+.|++++|.+.+
T Consensus 141 nL~~L~l~~-N~i~~l~-~~~~~l~~L~~L~l~~N-~l~~l~~-~~~~~~~L~~L~ls~N~i~~ 200 (394)
T COG4886 141 NLKELDLSD-NKIESLP-SPLRNLPNLKNLDLSFN-DLSDLPK-LLSNLSNLNNLDLSGNKISD 200 (394)
T ss_pred hcccccccc-cchhhhh-hhhhccccccccccCCc-hhhhhhh-hhhhhhhhhheeccCCcccc
Confidence 566666655 3333221 23345566666666553 3322211 11144555666666655443
No 66
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.82 E-value=0.008 Score=50.53 Aligned_cols=10 Identities=10% Similarity=0.142 Sum_probs=5.1
Q ss_pred CCCCCEEecC
Q 011699 332 RVPISELRVR 341 (479)
Q Consensus 332 ~~~L~~L~l~ 341 (479)
+|+|+.|++.
T Consensus 139 lp~l~~LDF~ 148 (233)
T KOG1644|consen 139 LPSLRTLDFQ 148 (233)
T ss_pred cCcceEeehh
Confidence 4555555554
No 67
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.54 E-value=0.013 Score=36.48 Aligned_cols=35 Identities=31% Similarity=0.423 Sum_probs=22.6
Q ss_pred CCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCC
Q 011699 59 PGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAP 95 (479)
Q Consensus 59 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 95 (479)
++|++|+++++.+.+ ++.....+++|+.|++++|+
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence 467788888777775 34423477888888888774
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.20 E-value=0.0082 Score=53.00 Aligned_cols=117 Identities=22% Similarity=0.221 Sum_probs=71.7
Q ss_pred CCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEecCCCCCCCHHHHHHHHhc
Q 011699 278 ITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASM 357 (479)
Q Consensus 278 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 357 (479)
+.+.++|+..+|. ++|..+-.- ++.|+.|.|+- +.|+.. .. +..|++|++|+|..| .|.+..-.....
T Consensus 18 l~~vkKLNcwg~~-L~DIsic~k-----Mp~lEVLsLSv-NkIssL--~p-l~rCtrLkElYLRkN-~I~sldEL~YLk- 85 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDISICEK-----MPLLEVLSLSV-NKISSL--AP-LQRCTRLKELYLRKN-CIESLDELEYLK- 85 (388)
T ss_pred HHHhhhhcccCCC-ccHHHHHHh-----cccceeEEeec-cccccc--hh-HHHHHHHHHHHHHhc-ccccHHHHHHHh-
Confidence 4577888888875 665544322 28899999987 566532 11 226889999999888 565543333333
Q ss_pred cccCCCCCCCCccEEEccCCCCCCHHHH----HHhhccCCCCccEEEecCCCCHHHHHHHHh
Q 011699 358 LVDDDRWYGSSIRLLDLYNCGGITQLAF----RWLKKPYFPRLRWLGVTGSVNRDILDALAR 415 (479)
Q Consensus 358 ~~~~~~~~~~~L~~L~l~~c~~i~~~~~----~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~ 415 (479)
.+|+|++|-|..|+-....+- ..+. .+|+|++|+=......+.-+++..
T Consensus 86 -------nlpsLr~LWL~ENPCc~~ag~nYR~~VLR--~LPnLkKLDnv~VteeEle~ALr~ 138 (388)
T KOG2123|consen 86 -------NLPSLRTLWLDENPCCGEAGQNYRRKVLR--VLPNLKKLDNVPVTEEELEEALRD 138 (388)
T ss_pred -------cCchhhhHhhccCCcccccchhHHHHHHH--HcccchhccCccccHHHHHHHHhc
Confidence 688899998888774433221 1222 378888887544333334444443
No 69
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.42 E-value=0.012 Score=46.32 Aligned_cols=63 Identities=24% Similarity=0.275 Sum_probs=33.6
Q ss_pred HhhCCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCC
Q 011699 223 SLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 289 (479)
Q Consensus 223 ~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~ 289 (479)
.+.....|+..+|++ +.+.+.........|.++.|++++|.+.+.... ++. ++.|+.|+++.+
T Consensus 48 ~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aa--m~aLr~lNl~~N 110 (177)
T KOG4579|consen 48 MLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAA--MPALRSLNLRFN 110 (177)
T ss_pred HHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcchhhhhhchHH-Hhh--hHHhhhcccccC
Confidence 344555566666666 244433333333455666666666666544333 333 566666666653
No 70
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.36 E-value=0.0062 Score=59.63 Aligned_cols=107 Identities=27% Similarity=0.256 Sum_probs=54.7
Q ss_pred HhCCCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHhhCC
Q 011699 148 DKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASN 227 (479)
Q Consensus 148 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 227 (479)
..+++|+.|++.+ +.+... ......+++|++|+++++....-.++. .++.|+.|++.+ +.+... ..+..+
T Consensus 92 ~~~~~l~~l~l~~-n~i~~i--~~~l~~~~~L~~L~ls~N~I~~i~~l~----~l~~L~~L~l~~-N~i~~~--~~~~~l 161 (414)
T KOG0531|consen 92 SKLKSLEALDLYD-NKIEKI--ENLLSSLVNLQVLDLSFNKITKLEGLS----TLTLLKELNLSG-NLISDI--SGLESL 161 (414)
T ss_pred ccccceeeeeccc-cchhhc--ccchhhhhcchheeccccccccccchh----hccchhhheecc-Ccchhc--cCCccc
Confidence 3456677777766 344322 221245677777777765533222222 233466676666 333322 223345
Q ss_pred CCCCEEecCCCCCCChHHH-HhhhcCCCCcEEEccCCCCc
Q 011699 228 TGIKVLDLRDCKNLGDEAL-RAISSLPQLKILLLDGSDIS 266 (479)
Q Consensus 228 ~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~l~ 266 (479)
+.|+.++++++ .+..... . +..+.+++.+.+.+|.+.
T Consensus 162 ~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 162 KSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred hhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCchh
Confidence 66666666663 3322222 1 355666666666666444
No 71
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.83 E-value=0.064 Score=28.27 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=11.8
Q ss_pred CCCcEEEccCCCCchHHHHHHH
Q 011699 253 PQLKILLLDGSDISDVGVSYLR 274 (479)
Q Consensus 253 ~~L~~L~l~~~~l~~~~l~~l~ 274 (479)
++|+.|+|++|.+++.++..+.
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 4566666666666666655443
No 72
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.72 E-value=0.051 Score=28.66 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=6.9
Q ss_pred CCCEEecCCCCCCCHHHHHH
Q 011699 334 PISELRVRQCPLIGDTSVIA 353 (479)
Q Consensus 334 ~L~~L~l~~~~~l~~~~~~~ 353 (479)
+|+.|+|++| .+++.++.+
T Consensus 3 ~L~~L~l~~n-~i~~~g~~~ 21 (24)
T PF13516_consen 3 NLETLDLSNN-QITDEGASA 21 (24)
T ss_dssp T-SEEE-TSS-BEHHHHHHH
T ss_pred CCCEEEccCC-cCCHHHHHH
Confidence 3444444444 344444333
No 73
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=93.07 E-value=0.018 Score=45.39 Aligned_cols=112 Identities=18% Similarity=0.168 Sum_probs=62.3
Q ss_pred CCEEEEcCCcccC-HHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHhhCCCCCC
Q 011699 153 MESICLGGFCRVT-DTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIK 231 (479)
Q Consensus 153 L~~L~l~~~~~l~-~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 231 (479)
+..++|+.|.-.. ...+.. ......|+..+++++.. ... ...+....+.++.|++.+ +.+.+.+.+ ++.++.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~-l~~~~el~~i~ls~N~f-k~f-p~kft~kf~t~t~lNl~~-neisdvPeE-~Aam~aLr 103 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYM-LSKGYELTKISLSDNGF-KKF-PKKFTIKFPTATTLNLAN-NEISDVPEE-LAAMPALR 103 (177)
T ss_pred hhhcccccchhhHHHHHHHH-HhCCceEEEEecccchh-hhC-CHHHhhccchhhhhhcch-hhhhhchHH-HhhhHHhh
Confidence 5566777763221 111222 23345666677776542 111 123444556777777777 566666655 77788888
Q ss_pred EEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHH
Q 011699 232 VLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVS 271 (479)
Q Consensus 232 ~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~ 271 (479)
.|+++.+ .+. .....+..+.++-.|+..++.+......
T Consensus 104 ~lNl~~N-~l~-~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 104 SLNLRFN-PLN-AEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred hcccccC-ccc-cchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 8888764 232 2334455566667777776654443333
No 74
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=91.82 E-value=0.051 Score=53.27 Aligned_cols=100 Identities=34% Similarity=0.372 Sum_probs=56.1
Q ss_pred cCCCccEEEcCCCCCCCHHHHHH-hhCCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCC
Q 011699 201 TSLSLTHVCLRWCNLLTNHAIKS-LASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVIT 279 (479)
Q Consensus 201 ~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~ 279 (479)
.+.+|+.|++.+ +.+.. +.. +..+++|++|+++++ .++. +..+..++.|+.|++.+|.+.... .+. .++
T Consensus 93 ~~~~l~~l~l~~-n~i~~--i~~~l~~~~~L~~L~ls~N-~I~~--i~~l~~l~~L~~L~l~~N~i~~~~--~~~--~l~ 162 (414)
T KOG0531|consen 93 KLKSLEALDLYD-NKIEK--IENLLSSLVNLQVLDLSFN-KITK--LEGLSTLTLLKELNLSGNLISDIS--GLE--SLK 162 (414)
T ss_pred cccceeeeeccc-cchhh--cccchhhhhcchheecccc-cccc--ccchhhccchhhheeccCcchhcc--CCc--cch
Confidence 455777777776 34432 223 456778888888773 4433 234455566788888887665422 111 155
Q ss_pred CccEEecCCCCCCCHHH--HHHHhccCCCCCccEEecCC
Q 011699 280 SLVKLSLRGCKRLTDKC--ISALFDGTSKLQLQELDLSN 316 (479)
Q Consensus 280 ~L~~L~l~~~~~l~~~~--~~~l~~~~~~~~L~~L~L~~ 316 (479)
.|+.++++++....-+. ...+ .+++.+.+.+
T Consensus 163 ~L~~l~l~~n~i~~ie~~~~~~~------~~l~~l~l~~ 195 (414)
T KOG0531|consen 163 SLKLLDLSYNRIVDIENDELSEL------ISLEELDLGG 195 (414)
T ss_pred hhhcccCCcchhhhhhhhhhhhc------cchHHHhccC
Confidence 66667776643222222 1222 6677777776
No 75
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=90.86 E-value=0.016 Score=56.32 Aligned_cols=127 Identities=16% Similarity=0.180 Sum_probs=70.8
Q ss_pred CCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHhhCCCCCC
Q 011699 152 SMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIK 231 (479)
Q Consensus 152 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 231 (479)
-|+.|.+++ ++++.. ...+. ..+.|..|+.+.|...+ +..-...+.+|+.|++.. +.+...+- .+. .-.|.
T Consensus 144 pLkvli~sN-Nkl~~l-p~~ig-~~~tl~~ld~s~nei~s---lpsql~~l~slr~l~vrR-n~l~~lp~-El~-~LpLi 214 (722)
T KOG0532|consen 144 PLKVLIVSN-NKLTSL-PEEIG-LLPTLAHLDVSKNEIQS---LPSQLGYLTSLRDLNVRR-NHLEDLPE-ELC-SLPLI 214 (722)
T ss_pred cceeEEEec-CccccC-Ccccc-cchhHHHhhhhhhhhhh---chHHhhhHHHHHHHHHhh-hhhhhCCH-HHh-CCcee
Confidence 478888887 566543 23332 56777788877765321 111122334666666665 34333322 233 33577
Q ss_pred EEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCC
Q 011699 232 VLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 289 (479)
Q Consensus 232 ~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~ 289 (479)
.|+++. +++....+ .+..+..|+.|.|.+|.+.........+....-.+.|++..|
T Consensus 215 ~lDfSc-Nkis~iPv-~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 215 RLDFSC-NKISYLPV-DFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeccc-Cceeecch-hhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 888875 46554433 456788888888888877765554444311223445555555
No 76
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=88.96 E-value=0.62 Score=25.58 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=16.1
Q ss_pred CCCcEEEccCCCCchHHHHHHHh
Q 011699 253 PQLKILLLDGSDISDVGVSYLRL 275 (479)
Q Consensus 253 ~~L~~L~l~~~~l~~~~l~~l~~ 275 (479)
++|+.|+|++|.+.+.|...+..
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 46777777777777777766654
No 77
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=88.21 E-value=0.85 Score=25.03 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=13.4
Q ss_pred CCCCEEecCCCCCCCHHHHHHHHh
Q 011699 333 VPISELRVRQCPLIGDTSVIALAS 356 (479)
Q Consensus 333 ~~L~~L~l~~~~~l~~~~~~~l~~ 356 (479)
++|++|+|++| .+++.|...++.
T Consensus 2 ~~L~~LdL~~N-~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNN-KLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCC-CCCHHHHHHHHH
Confidence 34566666666 556666655554
No 78
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=87.11 E-value=1.3 Score=43.59 Aligned_cols=86 Identities=17% Similarity=0.111 Sum_probs=48.4
Q ss_pred HHhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccCCCC-CC-HHHHHHhhccCCCCccEEEecCCC
Q 011699 328 LATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGG-IT-QLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 328 l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~-i~-~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
+....|.+..+.|++|.-..-.++..++. ..|+|+.|+|++|.. +. ...+..+ ....|++|.+.||+
T Consensus 213 ~~~n~p~i~sl~lsnNrL~~Ld~~sslsq--------~apklk~L~LS~N~~~~~~~~el~K~---k~l~Leel~l~GNP 281 (585)
T KOG3763|consen 213 IEENFPEILSLSLSNNRLYHLDALSSLSQ--------IAPKLKTLDLSHNHSKISSESELDKL---KGLPLEELVLEGNP 281 (585)
T ss_pred hhcCCcceeeeecccchhhchhhhhHHHH--------hcchhheeecccchhhhcchhhhhhh---cCCCHHHeeecCCc
Confidence 34455666667776664333444555555 567777777777621 11 1122222 35567777777776
Q ss_pred -------CHHHHHHHHhcCCCceeec
Q 011699 406 -------NRDILDALARSRPFLNVAC 424 (479)
Q Consensus 406 -------~~~~~~~~~~~~p~l~~~~ 424 (479)
...-+.++.+.+|++....
T Consensus 282 lc~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 282 LCTTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred cccchhhhHHHHHHHHHhcchheeec
Confidence 2334556667788776543
No 79
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=86.72 E-value=0.078 Score=51.85 Aligned_cols=153 Identities=16% Similarity=0.236 Sum_probs=74.3
Q ss_pred hhCCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCC-HHHHHHHhc
Q 011699 224 LASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT-DKCISALFD 302 (479)
Q Consensus 224 l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~-~~~~~~l~~ 302 (479)
++.+..|..|+++.+ .+.... ..+.. --|+.|-+++|.++..... +. ..++|..|+.+.|.-.+ ...+..+
T Consensus 117 i~~L~~lt~l~ls~N-qlS~lp-~~lC~-lpLkvli~sNNkl~~lp~~-ig--~~~tl~~ld~s~nei~slpsql~~l-- 188 (722)
T KOG0532|consen 117 ICNLEALTFLDLSSN-QLSHLP-DGLCD-LPLKVLIVSNNKLTSLPEE-IG--LLPTLAHLDVSKNEIQSLPSQLGYL-- 188 (722)
T ss_pred hhhhhHHHHhhhccc-hhhcCC-hhhhc-CcceeEEEecCccccCCcc-cc--cchhHHHhhhhhhhhhhchHHhhhH--
Confidence 445666777777653 332111 11222 2467777777765532211 22 24566666666643222 1222222
Q ss_pred cCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccCCCCCCH
Q 011699 303 GTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQ 382 (479)
Q Consensus 303 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~ 382 (479)
.+|+.|.+.. +.+....- .++ +-.|..|+++.| ++....+.. . .++.|++|-|.+|+ +..
T Consensus 189 ----~slr~l~vrR-n~l~~lp~-El~--~LpLi~lDfScN-kis~iPv~f-r---------~m~~Lq~l~LenNP-LqS 248 (722)
T KOG0532|consen 189 ----TSLRDLNVRR-NHLEDLPE-ELC--SLPLIRLDFSCN-KISYLPVDF-R---------KMRHLQVLQLENNP-LQS 248 (722)
T ss_pred ----HHHHHHHHhh-hhhhhCCH-HHh--CCceeeeecccC-ceeecchhh-h---------hhhhheeeeeccCC-CCC
Confidence 5566666665 33322111 121 234777788766 555433222 1 35678888888777 554
Q ss_pred HHHHHhhccCCCCccEEEecCC
Q 011699 383 LAFRWLKKPYFPRLRWLGVTGS 404 (479)
Q Consensus 383 ~~~~~l~~~~~~~L~~L~l~~~ 404 (479)
-...-..++...=.|+|+...|
T Consensus 249 PPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 249 PPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ChHHHHhccceeeeeeecchhc
Confidence 3333332222334556666656
No 80
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=83.18 E-value=0.4 Score=38.01 Aligned_cols=11 Identities=36% Similarity=0.712 Sum_probs=4.1
Q ss_pred CCCCCEEEEcC
Q 011699 150 CASMESICLGG 160 (479)
Q Consensus 150 ~~~L~~L~l~~ 160 (479)
+++|+.+.+..
T Consensus 34 ~~~l~~i~~~~ 44 (129)
T PF13306_consen 34 CTSLKSINFPN 44 (129)
T ss_dssp -TT-SEEEESS
T ss_pred ccccccccccc
Confidence 34444444443
No 81
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=82.25 E-value=1.1 Score=21.34 Aligned_cols=12 Identities=25% Similarity=0.421 Sum_probs=4.6
Q ss_pred CCcEEEccCCCC
Q 011699 254 QLKILLLDGSDI 265 (479)
Q Consensus 254 ~L~~L~l~~~~l 265 (479)
+|+.|++++|.+
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 445555555543
No 82
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=79.31 E-value=0.5 Score=37.42 Aligned_cols=9 Identities=22% Similarity=0.486 Sum_probs=2.8
Q ss_pred CCCCCEEec
Q 011699 227 NTGIKVLDL 235 (479)
Q Consensus 227 ~~~L~~L~l 235 (479)
+++|+.+.+
T Consensus 34 ~~~l~~i~~ 42 (129)
T PF13306_consen 34 CTSLKSINF 42 (129)
T ss_dssp -TT-SEEEE
T ss_pred ccccccccc
Confidence 333444443
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=75.13 E-value=4.1 Score=40.25 Aligned_cols=87 Identities=24% Similarity=0.247 Sum_probs=46.5
Q ss_pred cCCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCC-CCC-HHHHHHHHhcCCCCCEEecCCCCCCCHH-----
Q 011699 277 VITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLP-HLS-DNGILTLATCRVPISELRVRQCPLIGDT----- 349 (479)
Q Consensus 277 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~L~~~~-~i~-~~~~~~l~~~~~~L~~L~l~~~~~l~~~----- 349 (479)
..|.+..++++++....-+++..+++.. |+|+.|+|++.. .+. ...+..+ ....|++|-+.+||-.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~a--pklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf~~~s~ 291 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIA--PKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTTFSDRSE 291 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhc--chhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccchhhhHH
Confidence 5677777777775444445555555544 777777777731 222 2222222 2345777777777543322
Q ss_pred HHHHHHhccccCCCCCCCCccEEEcc
Q 011699 350 SVIALASMLVDDDRWYGSSIRLLDLY 375 (479)
Q Consensus 350 ~~~~l~~~~~~~~~~~~~~L~~L~l~ 375 (479)
-+.++.. .+|+|..||=.
T Consensus 292 yv~~i~~--------~FPKL~~LDG~ 309 (585)
T KOG3763|consen 292 YVSAIRE--------LFPKLLRLDGV 309 (585)
T ss_pred HHHHHHH--------hcchheeecCc
Confidence 2333333 56666666543
No 84
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=56.80 E-value=5.8 Score=20.13 Aligned_cols=13 Identities=31% Similarity=0.608 Sum_probs=7.6
Q ss_pred CCcEEEccCCCCc
Q 011699 254 QLKILLLDGSDIS 266 (479)
Q Consensus 254 ~L~~L~l~~~~l~ 266 (479)
+|+.|++++|.++
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 3566666666554
No 85
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=55.03 E-value=11 Score=19.93 Aligned_cols=15 Identities=33% Similarity=0.545 Sum_probs=9.6
Q ss_pred CCCcEEEccCCCCch
Q 011699 253 PQLKILLLDGSDISD 267 (479)
Q Consensus 253 ~~L~~L~l~~~~l~~ 267 (479)
++|+.|++++|.+..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 566777777765543
No 86
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=55.03 E-value=11 Score=19.93 Aligned_cols=15 Identities=33% Similarity=0.545 Sum_probs=9.6
Q ss_pred CCCcEEEccCCCCch
Q 011699 253 PQLKILLLDGSDISD 267 (479)
Q Consensus 253 ~~L~~L~l~~~~l~~ 267 (479)
++|+.|++++|.+..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 566777777765543
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=53.87 E-value=20 Score=34.96 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=10.8
Q ss_pred CCCCccEEEccCCCCCCHHH
Q 011699 365 YGSSIRLLDLYNCGGITQLA 384 (479)
Q Consensus 365 ~~~~L~~L~l~~c~~i~~~~ 384 (479)
.-+.+..|+++++. +.+.+
T Consensus 438 stqtl~kldisgn~-mgd~g 456 (553)
T KOG4242|consen 438 STQTLAKLDISGNG-MGDGG 456 (553)
T ss_pred cCcccccccccCCC-cccCC
Confidence 34566666666665 44433
No 88
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=51.74 E-value=11 Score=20.18 Aligned_cols=8 Identities=38% Similarity=0.634 Sum_probs=3.8
Q ss_pred ccEEecCC
Q 011699 309 LQELDLSN 316 (479)
Q Consensus 309 L~~L~L~~ 316 (479)
|++|.|..
T Consensus 2 LKtL~L~~ 9 (26)
T PF07723_consen 2 LKTLHLDS 9 (26)
T ss_pred CeEEEeeE
Confidence 44444444
No 89
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=50.67 E-value=36 Score=31.62 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=15.3
Q ss_pred HhcCCCCCEEecCCCCCCCHHHHHHHHhc
Q 011699 329 ATCRVPISELRVRQCPLIGDTSVIALASM 357 (479)
Q Consensus 329 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 357 (479)
...++.|++|++.+| .|+..++.++..+
T Consensus 251 l~~n~sl~slnvesn-FItg~gi~a~~~a 278 (353)
T KOG3735|consen 251 LKENKSLTSLNVESN-FITGLGIMALLRA 278 (353)
T ss_pred Hhhcchhhheecccc-ccccHHHHHHHHH
Confidence 344455666666555 5555555555543
No 90
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=41.66 E-value=73 Score=29.72 Aligned_cols=100 Identities=17% Similarity=0.177 Sum_probs=62.6
Q ss_pred HHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCC---CCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccE
Q 011699 295 KCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRV---PISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRL 371 (479)
Q Consensus 295 ~~~~~l~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~~~~---~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~ 371 (479)
..+..+-... +.++.+++.+...+....+..+...+. ..+...+.+- ...+....+++.++. .++.|++
T Consensus 188 ~~leri~~nd--~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~t-r~~d~vA~a~a~ml~-----~n~sl~s 259 (353)
T KOG3735|consen 188 SSLERIKEND--TGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANT-RSSDPVAFAIAEMLK-----ENKSLTS 259 (353)
T ss_pred HHHHHHhcCC--CCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcc-cCCchhHHHHHHHHh-----hcchhhh
Confidence 3444443333 889999998877777776666655443 3444444443 444444444444444 6899999
Q ss_pred EEccCCCCCCHHHHHHhhcc--CCCCccEEEecC
Q 011699 372 LDLYNCGGITQLAFRWLKKP--YFPRLRWLGVTG 403 (479)
Q Consensus 372 L~l~~c~~i~~~~~~~l~~~--~~~~L~~L~l~~ 403 (479)
|+++++. ||..++-.+..+ .-.+|..+.+.+
T Consensus 260 lnvesnF-Itg~gi~a~~~al~~n~tl~el~~dn 292 (353)
T KOG3735|consen 260 LNVESNF-ITGLGIMALLRALQSNKSLTELKNDN 292 (353)
T ss_pred eeccccc-cccHHHHHHHHHHhccchhhHhhhhh
Confidence 9999998 998887766541 124666666543
No 91
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=38.46 E-value=30 Score=18.61 Aligned_cols=14 Identities=29% Similarity=0.294 Sum_probs=9.3
Q ss_pred CCCcEEEccCCCCc
Q 011699 253 PQLKILLLDGSDIS 266 (479)
Q Consensus 253 ~~L~~L~l~~~~l~ 266 (479)
.+|+.|+++.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 46777777777654
No 92
>PHA02608 67 prohead core protein; Provisional
Probab=31.41 E-value=34 Score=23.85 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=8.4
Q ss_pred HHHHHHhcCCCCC
Q 011699 450 ELEQWLMEGEDES 462 (479)
Q Consensus 450 ~l~~~~~~~~~~~ 462 (479)
--+.++.+||..+
T Consensus 39 IA~sv~iEGEe~e 51 (80)
T PHA02608 39 IARSVMIEGEEPE 51 (80)
T ss_pred HHHHHhhcCCCCc
Confidence 3456778887644
No 93
>PF05756 S-antigen: S-antigen protein; InterPro: IPR008825 S-antigens are heat stable proteins that are found in the blood of individuals infected with malaria [].
Probab=22.16 E-value=52 Score=22.84 Aligned_cols=14 Identities=29% Similarity=0.283 Sum_probs=6.8
Q ss_pred HHHHHHHhcCCCCC
Q 011699 449 DELEQWLMEGEDES 462 (479)
Q Consensus 449 ~~l~~~~~~~~~~~ 462 (479)
+..+++..++|-+.
T Consensus 55 ~ky~dleee~egen 68 (94)
T PF05756_consen 55 QKYEDLEEEKEGEN 68 (94)
T ss_pred cchhhHHHhccCCC
Confidence 34455555555443
No 94
>COG5129 MAK16 Nuclear protein with HMG-like acidic region [General function prediction only]
Probab=21.80 E-value=45 Score=28.64 Aligned_cols=12 Identities=33% Similarity=0.745 Sum_probs=8.2
Q ss_pred chHHHHHHHhcC
Q 011699 447 EVDELEQWLMEG 458 (479)
Q Consensus 447 ~~~~l~~~~~~~ 458 (479)
+.+.+++|+-.+
T Consensus 227 ~~~dlekWl~~~ 238 (303)
T COG5129 227 KKKDLEKWLGSD 238 (303)
T ss_pred hHHHHHHHhccc
Confidence 356799999433
No 95
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=21.17 E-value=60 Score=17.53 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=9.3
Q ss_pred CCCcEEEccCCCCc
Q 011699 253 PQLKILLLDGSDIS 266 (479)
Q Consensus 253 ~~L~~L~l~~~~l~ 266 (479)
++|+.|++++|.++
T Consensus 2 ~~L~~L~vs~N~Lt 15 (26)
T smart00364 2 PSLKELNVSNNQLT 15 (26)
T ss_pred cccceeecCCCccc
Confidence 35677777777655
Done!