BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011700
(479 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2
System From Rhodopseudomonas Palustris
Length = 404
Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 116/359 (32%), Positives = 179/359 (49%), Gaps = 23/359 (6%)
Query: 30 PGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTP-KWYNEHGIEL 88
PG + +I++E PY+RP LSK YL + N P K++ + IEL
Sbjct: 26 PGRIALINDEKHLPYQRPPLSKAYL-----------KSGGDPNSLMFRPEKFFQDQAIEL 74
Query: 89 VLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLA 148
+ R+ S D + L+ A+G I Y L++ATGAR L+ + + +V YLR L
Sbjct: 75 I-SDRMVSIDREGRKLLLASGTAIEYGHLVLATGARNRMLD---VPNASLPDVLYLRTLD 130
Query: 149 DANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIAS 208
++ L M + VVIG G+IG+E AA+ + V +V MAR+ TP+I+S
Sbjct: 131 ESEVLRQRMPDKK--HVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISS 188
Query: 209 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE 268
Y+ + + G++ G + + + +V V L DGN LP D+VVVG+G+ PN +
Sbjct: 189 YFHDRHSGAGIRMHYGVRATEIAAEGD-RVTGVVLSDGNTLPCDLVVVGVGVIPNVEIAA 247
Query: 269 GQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAI 328
GI V +L +S+ + A+GD A F GET R+E V +A A+ VAA
Sbjct: 248 AAGLPTAAGIIVDQQLLTSDPHISAIGDCALFESVRFGETMRVESVQNATDQAR-CVAAR 306
Query: 329 MEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGNFSGTTFGAYWVNKGRLVG 385
+ D +D P+F+S Q G G +VV G+ + +F A+ G+L+G
Sbjct: 307 LTGD-AKPYDGYPWFWSDQGDDKLQIVGLTAGFDQVVIRGSVAERSFSAFCYKAGKLIG 364
>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1R|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
Length = 431
Score = 157 bits (398), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 116/408 (28%), Positives = 197/408 (48%), Gaps = 17/408 (4%)
Query: 31 GELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEHGIELVL 90
G + ++ + V P+ P LSK YL +A A T P Y I+L+
Sbjct: 30 GNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRT----------PDAYAAQNIQLLG 79
Query: 91 GTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADA 150
GT+V + + R+ ++ + G + Y L++ATG R L + A N YLR L DA
Sbjct: 80 GTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDA 139
Query: 151 NRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYY 210
+ + + VVIGGGYIG+E AA+ + ++VT++ A + R+ P ++++Y
Sbjct: 140 ECIRRQL--IADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFY 197
Query: 211 EEYYKSKGVKFVKGTVLSSFDVDSNG-KVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG 269
E ++ GV GT + F++ ++ KV AV DG RLP D+V+ GIG+ PN L
Sbjct: 198 EHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELASA 257
Query: 270 QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 329
GI + +Q+S+ + AVGD A F +L R+E V +A + A+ +AAI+
Sbjct: 258 AGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARK-IAAIL 316
Query: 330 EPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGNFSGTTFGAYWVNKGRLVGSF 387
K + + P+F+S + + + G + G ++ G+ + F +++ R++
Sbjct: 317 -CGKVPRDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVLAVD 375
Query: 388 LEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALAVSQKPLPSTP 435
E ++ T PV +L E+ L +A ++ L S P
Sbjct: 376 TVNRPVEFNQSKQIITDRLPVEPNLLGDESVPLKEIIAAAKAELSSAP 423
>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
pdb|3LB8|B Chain B, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
Length = 436
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/358 (29%), Positives = 179/358 (50%), Gaps = 17/358 (4%)
Query: 31 GELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEHGIELVL 90
G + ++ + V P+ P LSK YL +A A T P Y I+L+
Sbjct: 29 GNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRT----------PDAYAAQNIQLLG 78
Query: 91 GTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADA 150
GT+V + + R+ ++ + G + Y L++ATG R L + A N YLR L DA
Sbjct: 79 GTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDA 138
Query: 151 NRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYY 210
+ + + VVIGGGYIG+E AA+ + ++VT++ A + R+ P ++++Y
Sbjct: 139 ECIRRQL--IADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFY 196
Query: 211 EEYYKSKGVKFVKGTVLSSFDVDSNG-KVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG 269
E ++ GV GT + F++ ++ KV AV DG RLP D+V+ GIG+ PN L
Sbjct: 197 EHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELASA 256
Query: 270 QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 329
GI + +Q+S+ + AVGD A F +L R+E V +A + A+ +AAI+
Sbjct: 257 AGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARK-IAAIL 315
Query: 330 EPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGNFSGTTFGAYWVNKGRLVG 385
K + + P+F+S + + + G + G ++ G+ + F +++ R++
Sbjct: 316 -CGKVPRDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVLA 372
>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From
Novosphingobium Aromaticivorans
Length = 415
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/358 (31%), Positives = 169/358 (47%), Gaps = 22/358 (6%)
Query: 31 GELCIISEEPVAPYERPALSKGYLLPEAPARLPSFH-TCVGANEERLTPKWYNEHGIELV 89
G + +I EP PYERP LSK YL AR +F C+ +++ + +E+
Sbjct: 35 GRVLVIGREPEIPYERPPLSKEYL-----AREKTFERICI------RPAQFWEDKAVEMK 83
Query: 90 LGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLAD 149
LG V S D T+ G I Y LI ATG +L G+D V +R D
Sbjct: 84 LGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRLS---CVGADLAGVHAVRTKED 140
Query: 150 ANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASY 209
A+RL+ + + NAVVIGGGYIG+E AA L +NVT++ +AR+ ++ +
Sbjct: 141 ADRLMAELDA-GAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEF 199
Query: 210 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG 269
Y+ +++ GV G + + D KV V ++DG+ +P D+V+VGIGI P
Sbjct: 200 YQAEHRAHGVDLRTGAAMDCIEGDGT-KVTGVRMQDGSVIPADIVIVGIGIVPCVGALIS 258
Query: 270 QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLL-GETRRLEHVDSARKSAKHAVAAI 328
G+ V ++S + VYA+GD AA G RLE V +A A A I
Sbjct: 259 AGASGGNGVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDI 318
Query: 329 MEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGE--VVHYGNFSGTTFGAYWVNKGRLV 384
+ P+F+S + L Q G + G V G+ + +F ++ G++V
Sbjct: 319 C--GAPVPYKATPWFWSNQYDLKLQTVGLSTGHDNAVLRGDPATRSFSVVYLKGGKVV 374
>pdb|3GD3|A Chain A, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
pdb|3GD3|B Chain B, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
pdb|3GD3|C Chain C, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
pdb|3GD3|D Chain D, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
Length = 535
Score = 115 bits (287), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 102/370 (27%), Positives = 171/370 (46%), Gaps = 38/370 (10%)
Query: 29 PPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEER----LTPKWY--- 81
P + I+SE+P PY RP LSK + P + +ER P +Y
Sbjct: 77 PGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQWNGKERSIYFQPPSFYVSA 136
Query: 82 ------NEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSG 135
G+ ++ G +V DVR + G I+++ +IATG L +G
Sbjct: 137 QDLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAG 196
Query: 136 SDAENVCYL-RDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASL----VINKINVTM 190
++ ++ L R + D L + + + VIGGG++G E A +L + I V
Sbjct: 197 AEVKSRTTLFRKIGDFRALEKISREVK--SITVIGGGFLGSELACALGRKSQASGIEVIQ 254
Query: 191 VFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLP 250
+FPE M ++ ++++ E K +GVK + ++ S V S G+++ + L+DG ++
Sbjct: 255 LFPEKGNMGKILPQYLSNWTMEKVKREGVKVMPNAIVQSVGV-SGGRLL-IKLKDGRKVE 312
Query: 251 TDMVVVGIGIRPNTSLFE-GQLTLEK--GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGE 307
TD +V +G+ PN L + G L ++ GG +V LQ + S+++ GD A F LG
Sbjct: 313 TDHIVTAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQ-ARSNIWVAGDAACFYDIKLGR 371
Query: 308 TRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-EVVHYG 366
RR+EH D A S + A + K P+++ +F W G +VG E +
Sbjct: 372 -RRVEHHDHAVVSGRLAGENMTGAAK-------PYWHQSMF---WSDLGPDVGYEAIGLV 420
Query: 367 NFSGTTFGAY 376
+ S T G +
Sbjct: 421 DSSLPTVGVF 430
>pdb|3GD4|A Chain A, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine
Apoptosis Inducing Factor
pdb|3GD4|B Chain B, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine
Apoptosis Inducing Factor
Length = 511
Score = 114 bits (286), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 102/370 (27%), Positives = 171/370 (46%), Gaps = 38/370 (10%)
Query: 29 PPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEER----LTPKWY--- 81
P + I+SE+P PY RP LSK + P + +ER P +Y
Sbjct: 53 PGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQWNGKERSIYFQPPSFYVSA 112
Query: 82 ------NEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSG 135
G+ ++ G +V DVR + G I+++ +IATG L +G
Sbjct: 113 QDLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAG 172
Query: 136 SDAENVCYL-RDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASL----VINKINVTM 190
++ ++ L R + D L + + + VIGGG++G E A +L + I V
Sbjct: 173 AEVKSRTTLFRKIGDFRALEKISREVK--SITVIGGGFLGSELACALGRKSQASGIEVIQ 230
Query: 191 VFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLP 250
+FPE M ++ ++++ E K +GVK + ++ S V S G+++ + L+DG ++
Sbjct: 231 LFPEKGNMGKILPQYLSNWTMEKVKREGVKVMPNAIVQSVGV-SGGRLL-IKLKDGRKVE 288
Query: 251 TDMVVVGIGIRPNTSLFE-GQLTLEK--GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGE 307
TD +V +G+ PN L + G L ++ GG +V LQ + S+++ GD A F LG
Sbjct: 289 TDHIVTAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQ-ARSNIWVAGDAACFYDIKLGR 347
Query: 308 TRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-EVVHYG 366
RR+EH D A S + A + K P+++ +F W G +VG E +
Sbjct: 348 -RRVEHHDHAVVSGRLAGENMTGAAK-------PYWHQSMF---WSDLGPDVGYEAIGLV 396
Query: 367 NFSGTTFGAY 376
+ S T G +
Sbjct: 397 DSSLPTVGVF 406
>pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif)
pdb|1GV4|B Chain B, Murine Apoptosis-Inducing Factor (Aif)
Length = 528
Score = 114 bits (286), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 102/370 (27%), Positives = 171/370 (46%), Gaps = 38/370 (10%)
Query: 29 PPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEER----LTPKWY--- 81
P + I+SE+P PY RP LSK + P + +ER P +Y
Sbjct: 72 PGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQWNGKERSIYFQPPSFYVSA 131
Query: 82 ------NEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSG 135
G+ ++ G +V DVR + G I+++ +IATG L +G
Sbjct: 132 QDLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAG 191
Query: 136 SDAENVCYL-RDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASL----VINKINVTM 190
++ ++ L R + D L + + + VIGGG++G E A +L + I V
Sbjct: 192 AEVKSRTTLFRKIGDFRALEKISREVK--SITVIGGGFLGSELACALGRKSQASGIEVIQ 249
Query: 191 VFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLP 250
+FPE M ++ ++++ E K +GVK + ++ S V S G+++ + L+DG ++
Sbjct: 250 LFPEKGNMGKILPQYLSNWTMEKVKREGVKVMPNAIVQSVGV-SGGRLL-IKLKDGRKVE 307
Query: 251 TDMVVVGIGIRPNTSLFE-GQLTLEK--GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGE 307
TD +V +G+ PN L + G L ++ GG +V LQ + S+++ GD A F LG
Sbjct: 308 TDHIVTAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQ-ARSNIWVAGDAACFYDIKLGR 366
Query: 308 TRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-EVVHYG 366
RR+EH D A S + A + K P+++ +F W G +VG E +
Sbjct: 367 -RRVEHHDHAVVSGRLAGENMTGAAK-------PYWHQSMF---WSDLGPDVGYEAIGLV 415
Query: 367 NFSGTTFGAY 376
+ S T G +
Sbjct: 416 DSSLPTVGVF 425
>pdb|4FDC|B Chain B, Crystal Structure Of The E493v Mutant Of Human Apoptosis
Inducing Factor (Aif)
Length = 514
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 98/355 (27%), Positives = 164/355 (46%), Gaps = 37/355 (10%)
Query: 29 PPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEER----LTPKWY--- 81
P + I+SE+P PY RP LSK + P + +ER P +Y
Sbjct: 53 PGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSA 112
Query: 82 ------NEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSG 135
G+ ++ G +V DVR + G I+Y+ +IATG L +G
Sbjct: 113 QDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAG 172
Query: 136 SDAENVCYL-RDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINK----INVTM 190
++ ++ L R + D L + + + +IGGG++G E A +L V
Sbjct: 173 AEVKSRTTLFRKIGDFRSLEKISREVK--SITIIGGGFLGSELACALGRKARALGTEVIQ 230
Query: 191 VFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLP 250
+FPE M ++ ++++ E + +GVK + ++ S V S+GK++ + L+DG ++
Sbjct: 231 LFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGV-SSGKLL-IKLKDGRKVE 288
Query: 251 TDMVVVGIGIRPNTSLFE-GQLTLEK--GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGE 307
TD +V +G+ PN L + G L ++ GG +V LQ + S+++ GD A F LG
Sbjct: 289 TDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQ-ARSNIWVAGDAACFYDIKLGR 347
Query: 308 TRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV 362
RR+EH D A S + A + K P+++ +F W G +VG V
Sbjct: 348 -RRVEHHDHAVVSGRLAGENMTGAAK-------PYWHQSMF---WSDLGPDVGYV 391
>pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif)
Length = 493
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/370 (27%), Positives = 170/370 (45%), Gaps = 38/370 (10%)
Query: 29 PPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEER----LTPKWY--- 81
P + I+SE+P PY RP LSK + P + +ER P +Y
Sbjct: 35 PGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSA 94
Query: 82 ------NEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSG 135
G+ ++ G +V DVR + G I+Y+ +IATG L +G
Sbjct: 95 QDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAG 154
Query: 136 SDAENVCYL-RDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINK----INVTM 190
++ ++ L R + D L + + + +IGGG++G E A +L V
Sbjct: 155 AEVKSRTTLFRKIGDFRSLEKISREVK--SITIIGGGFLGSELACALGRKARALGTEVIQ 212
Query: 191 VFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLP 250
+FPE M ++ ++++ E + +GVK + ++ S V S+GK++ + L+DG ++
Sbjct: 213 LFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGV-SSGKLL-IKLKDGRKVE 270
Query: 251 TDMVVVGIGIRPNTSLFE-GQLTLEK--GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGE 307
TD +V +G+ PN L + G L ++ GG +V LQ + S+++ GD A F LG
Sbjct: 271 TDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQ-ARSNIWVAGDAACFYDIKLGR 329
Query: 308 TRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-EVVHYG 366
RR+EH D A S + A + K P+++ +F W G +VG E +
Sbjct: 330 -RRVEHHDHAVVSGRLAGENMTGAAK-------PYWHQSMF---WSDLGPDVGYEAIGLV 378
Query: 367 NFSGTTFGAY 376
+ S T G +
Sbjct: 379 DSSLPTVGVF 388
>pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
Length = 408
Score = 111 bits (277), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 107/362 (29%), Positives = 164/362 (45%), Gaps = 35/362 (9%)
Query: 31 GELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEHGIELVL 90
G + ++ +E PY+RP LSK F A + RL K E +E +L
Sbjct: 33 GLITVVGDEAERPYDRPPLSK------------DFMAHGDAEKIRLDCKRAPE--VEWLL 78
Query: 91 GTRVKSADVRRKTLVTATGETISYKILIIATGA--RALKLEEFGLSGSDAENVCYLRDLA 148
G +S D + T+ + G T+ Y L++ATGA RAL L G+ V LR L
Sbjct: 79 GVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPT----LQGATMP-VHTLRTLE 133
Query: 149 DANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIAS 208
DA R+ ++ S +++GGG IG+E AA+ ++V++V + M+R +A
Sbjct: 134 DARRIQAGLRPQS--RLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLAD 191
Query: 209 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-RDGNRLPTDMVVVGIGIRPNTSLF 267
+ Y+ ++GV F+ G V V L DG R+ DMVVVGIG+ N +L
Sbjct: 192 FVARYHAAQGVDL-------RFERSVTGSVDGVVLLDDGTRIAADMVVVGIGVLANDALA 244
Query: 268 EGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAA 327
GI V +++ VYA+GDV L G R+E +A+
Sbjct: 245 RAAGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARH 304
Query: 328 IMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-EVVHYGNFS--GTTFGAYWVNKGRLV 384
+++P + LP+++S L Q G G E + G S F + KGR+V
Sbjct: 305 LVDP-TAPGYAELPWYFSDQGALRIQVAGLASGDEEIVRGEVSLDAPKFTLIELQKGRIV 363
Query: 385 GS 386
G+
Sbjct: 364 GA 365
>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase,
Bpha4
pdb|1F3P|A Chain A, Ferredoxin Reductase (Bpha4)-Nadh Complex
pdb|2GQW|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2GR0|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (oxidized
Form, Nad+ Complex)
pdb|2GR1|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Hydroquinone)
pdb|2GR2|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2YVF|A Chain A, Crystal Structure Of Ferredoxin Reductase Bpha4
(Hydroquinone)
pdb|2YVG|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Blue-Semiquinone)
pdb|2YVJ|A Chain A, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
pdb|2YVJ|P Chain P, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
Length = 408
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 107/362 (29%), Positives = 164/362 (45%), Gaps = 35/362 (9%)
Query: 31 GELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEHGIELVL 90
G + ++ +E PY+RP LSK F A + RL K E +E +L
Sbjct: 33 GLITVVGDEAERPYDRPPLSK------------DFMAHGDAEKIRLDCKRAPE--VEWLL 78
Query: 91 GTRVKSADVRRKTLVTATGETISYKILIIATGA--RALKLEEFGLSGSDAENVCYLRDLA 148
G +S D + T+ + G T+ Y L++ATGA RAL L G+ V LR L
Sbjct: 79 GVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPT----LQGATMP-VHTLRTLE 133
Query: 149 DANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIAS 208
DA R+ ++ S +++GGG IG+E AA+ ++V++V + M+R +A
Sbjct: 134 DARRIQAGLRPQS--RLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLAD 191
Query: 209 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-RDGNRLPTDMVVVGIGIRPNTSLF 267
+ Y+ ++GV F+ G V V L DG R+ DMVVVGIG+ N +L
Sbjct: 192 FVARYHAAQGVDL-------RFERSVTGSVDGVVLLDDGTRIAADMVVVGIGVLANDALA 244
Query: 268 EGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAA 327
GI V +++ VYA+GDV L G R+E +A+
Sbjct: 245 RAAGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARH 304
Query: 328 IMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-EVVHYGNFS--GTTFGAYWVNKGRLV 384
+++P + LP+++S L Q G G E + G S F + KGR+V
Sbjct: 305 LVDP-TAPGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDAPKFTLIELQKGRIV 363
Query: 385 GS 386
G+
Sbjct: 364 GA 365
>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase
pdb|4EMI|A Chain A, Toluene Dioxygenase Reductase In Reduced State In Complex
With Nad+
pdb|4EMJ|A Chain A, Complex Between The Reductase And Ferredoxin Components Of
Toluene Dioxygenase
Length = 410
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 92/328 (28%), Positives = 148/328 (45%), Gaps = 23/328 (7%)
Query: 31 GELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEHGIELVL 90
G + +I +EP PY+RP+LSK +L + R P WY E I+++
Sbjct: 28 GRISLIGDEPHLPYDRPSLSKA-VLDGSLERPPILAEA----------DWYGEARIDMLT 76
Query: 91 GTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADA 150
G V + DV+ +T+ G T+S ++IATG+RA L GS V LR D
Sbjct: 77 GPEVTALDVQTRTISLDDGTTLSADAIVIATGSRA---RTMALPGSQLPGVVTLRTYGDV 133
Query: 151 NRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYY 210
L + S + +++GGG IG E A + ++VT++ + R+ +I ++
Sbjct: 134 QVLRDSWTSAT--RLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWL 191
Query: 211 EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF-EG 269
GV+ GT + F G++ V DG D ++ +G P L +
Sbjct: 192 RGLLTELGVQVELGTGVVGF--SGEGQLEQVMASDGRSFVADSALICVGAEPADQLARQA 249
Query: 270 QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 329
L ++ G+ V + V+AVGDVA++PL+ G R LE +A++ A AAI+
Sbjct: 250 GLACDR-GVIVDHCGATLAKGVFAVGDVASWPLR-AGGRRSLETYMNAQRQAAAVAAAIL 307
Query: 330 EPDKTDKFDYLPFFYSRVFTLSWQFYGD 357
K LP ++ + Q GD
Sbjct: 308 --GKNVSAPQLPVSWTEIAGHRMQMAGD 333
>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGC|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGE|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGE|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 121/261 (46%), Gaps = 18/261 (6%)
Query: 49 LSKGYLLPEAPARLPSFHTCVGANEERLTPK----WYNEHGIELVLGTRVKSADVRRKTL 104
L KG + A LP + A+ E+L + + +++GI+ + V D +K +
Sbjct: 67 LEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHEVTKVDTEKKIV 126
Query: 105 VTATGET-----ISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKS 159
+T SY L+IATG R + E G D + V L+ + DA R++ +++
Sbjct: 127 YAEHTKTKDVFEFSYDRLLIATGVRPVMPE---WEGRDLQGVHLLKTIPDAERILKTLET 183
Query: 160 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV 219
+ +IGGG IG+E A + V V M+ H + ++ +A Y + +
Sbjct: 184 NKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDH-IGTIYDGDMAEYIYKEADKHHI 242
Query: 220 KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ--LTLEKGG 277
+ + + +F N +V AV G D+V+V +G++PNT EG T KG
Sbjct: 243 EILTNENVKAF--KGNERVEAVETDKGT-YKADLVLVSVGVKPNTDFLEGTNIRTNHKGA 299
Query: 278 IKVTGRLQSSNSSVYAVGDVA 298
I+V +Q++ VYA GD A
Sbjct: 300 IEVNAYMQTNVQDVYAAGDCA 320
>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid
pdb|1NPX|A Chain A, Structure Of Nadh Peroxidase From Streptococcus Faecalis
10c1 Refined At 2.16 Angstroms Resolution
pdb|2NPX|A Chain A, Nadh Binding Site And Catalysis Of Nadh Peroxidase
Length = 447
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 105/240 (43%), Gaps = 7/240 (2%)
Query: 95 KSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLV 154
K V K LV+ +Y LII+ GA +L+ + G D +N+ +R A +L
Sbjct: 85 KEHQVTVKDLVSGEERVENYDKLIISPGAVPFELD---IPGKDLDNIYLMRGRQWAIKLK 141
Query: 155 NVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYY 214
N VVIG GYIG+E A + VT++ + + E
Sbjct: 142 QKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEM 201
Query: 215 KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLE 274
++ + G + ++ D G+V V + D N D+VVV +G+RPNT+ +G L L
Sbjct: 202 EANNITIATGETVERYEGD--GRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELH 258
Query: 275 KGG-IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK 333
G IK +++S V+AVGD + +ARK + AV + EP K
Sbjct: 259 PNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPVK 318
>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 105/240 (43%), Gaps = 7/240 (2%)
Query: 95 KSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLV 154
K V K LV+ +Y LII+ GA +L+ + G D +N+ +R A +L
Sbjct: 85 KEHQVTVKDLVSGEERVENYDKLIISPGAVPFELD---IPGKDLDNIYLMRGRQWAIKLK 141
Query: 155 NVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYY 214
N VVIG GYIG+E A + VT++ + + E
Sbjct: 142 QKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEM 201
Query: 215 KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLE 274
++ + G + ++ D G+V V + D N D+VVV +G+RPNT+ +G L L
Sbjct: 202 EANNITIATGETVERYEGD--GRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELH 258
Query: 275 KGG-IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK 333
G IK +++S V+AVGD + +ARK + AV + EP K
Sbjct: 259 PNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPVK 318
>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 105/240 (43%), Gaps = 7/240 (2%)
Query: 95 KSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLV 154
K V K LV+ +Y LII+ GA +L+ + G D +N+ +R A +L
Sbjct: 85 KEHQVTVKDLVSGEERVENYDKLIISPGAVPFELD---IPGKDLDNIYLMRGRQWAIKLK 141
Query: 155 NVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYY 214
N VVIG GYIG+E A + VT++ + + E
Sbjct: 142 QKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEM 201
Query: 215 KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLE 274
++ + G + ++ D G+V V + D N D+VVV +G+RPNT+ +G L L
Sbjct: 202 EANNITIATGETVERYEGD--GRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELH 258
Query: 275 KGG-IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK 333
G IK +++S V+AVGD + +ARK + AV + EP K
Sbjct: 259 PNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPVK 318
>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 105/240 (43%), Gaps = 7/240 (2%)
Query: 95 KSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLV 154
K V K LV+ +Y LII+ GA +L+ + G D +N+ +R A +L
Sbjct: 85 KEHQVTVKDLVSGEERVENYDKLIISPGAVPFELD---IPGKDLDNIYLMRGRQWAIKLK 141
Query: 155 NVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYY 214
N VVIG GYIG+E A + VT++ + + E
Sbjct: 142 QKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEM 201
Query: 215 KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLE 274
++ + G + ++ D G+V V + D N D+VVV +G+RPNT+ +G L L
Sbjct: 202 EANNITIATGETVERYEGD--GRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELH 258
Query: 275 KGG-IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK 333
G IK +++S V+AVGD + +ARK + AV + EP K
Sbjct: 259 PNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPVK 318
>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 112/261 (42%), Gaps = 7/261 (2%)
Query: 74 ERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGL 133
E++ + N + + K V K LV+ +Y LII+ GA +L+ +
Sbjct: 64 EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELD---I 120
Query: 134 SGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFP 193
G D +N+ +R A +L N VVIG GYIG+E A + VT++
Sbjct: 121 PGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDI 180
Query: 194 EAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDM 253
+ + E ++ + G + ++ D G+V V + D N D+
Sbjct: 181 LDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD--GRVQKV-VTDKNAYDADL 237
Query: 254 VVVGIGIRPNTSLFEGQLTLEKGG-IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLE 312
VVV +G+RPNT+ +G L L G IK +++S V+AVGD +
Sbjct: 238 VVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIA 297
Query: 313 HVDSARKSAKHAVAAIMEPDK 333
+ARK + AV + EP K
Sbjct: 298 LATNARKQGRFAVKNLEEPVK 318
>pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGB|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 118/261 (45%), Gaps = 18/261 (6%)
Query: 49 LSKGYLLPEAPARLPSFHTCVGANEERLTPK----WYNEHGIELVLGTRVKSADVRRKTL 104
L KG + A LP + A+ E+L + + +++GI+ + V D +K +
Sbjct: 67 LEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHEVTKVDTEKKIV 126
Query: 105 VTATGET-----ISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKS 159
+T SY L+IATG R + E G D + V L+ + DA R++ +++
Sbjct: 127 YAEHTKTKDVFEFSYDRLLIATGVRPVXPE---WEGRDLQGVHLLKTIPDAERILKTLET 183
Query: 160 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV 219
+ +IGGG IG+E A + V V + H + ++ A Y + +
Sbjct: 184 NKVEDVTIIGGGAIGLEXAETFVELGKKVRXIERNDH-IGTIYDGDXAEYIYKEADKHHI 242
Query: 220 KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ--LTLEKGG 277
+ + + +F N +V AV G D+V+V +G++PNT EG T KG
Sbjct: 243 EILTNENVKAF--KGNERVEAVETDKGT-YKADLVLVSVGVKPNTDFLEGTNIRTNHKGA 299
Query: 278 IKVTGRLQSSNSSVYAVGDVA 298
I+V Q++ VYA GD A
Sbjct: 300 IEVNAYXQTNVQDVYAAGDCA 320
>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
pdb|2CDU|B Chain B, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
Length = 452
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 113/229 (49%), Gaps = 13/229 (5%)
Query: 77 TPKWYNEHGIELVLGTRVKSAD-----VRRKTLVTATGETISYKILIIATGARALKLEEF 131
+P+ + G + + +V + D ++ K L+T +T +Y LI+ TG++
Sbjct: 64 SPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPP-- 121
Query: 132 GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMV 191
+ G D+ V ++ DA +L ++ +IG GYIG E A + NV ++
Sbjct: 122 -IPGIDSSRVYLCKNYNDAKKLFE--EAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLI 178
Query: 192 FPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPT 251
+ + F + + Y++ GV V G+ +++F+ + + +++ L DG + +
Sbjct: 179 DGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFE-EVDDEIITKTL-DGKEIKS 236
Query: 252 DMVVVGIGIRPNTSLFEGQLT-LEKGGIKVTGRLQSSNSSVYAVGDVAA 299
D+ ++ IG RPNT L +G++ L+ G I + SSN ++A GD AA
Sbjct: 237 DIAILCIGFRPNTELLKGKVAMLDNGAIITDEYMHSSNRDIFAAGDSAA 285
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 104/240 (43%), Gaps = 7/240 (2%)
Query: 95 KSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLV 154
K V K LV+ +Y LII+ GA +L+ + G D +N+ +R A +L
Sbjct: 85 KEHQVTVKDLVSGEERVENYDKLIISPGAVPFELD---IPGKDLDNIYLMRGRQWAIKLK 141
Query: 155 NVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYY 214
N VVIG GYIG+E A + VT++ + + E
Sbjct: 142 QKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEM 201
Query: 215 KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLE 274
++ + G + ++ D G+V V + D N D+VVV +G+RPNT+ +G L L
Sbjct: 202 EANNITIATGETVERYEGD--GRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELH 258
Query: 275 KGG-IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK 333
G IK +++S V+AVGD + +A K + AV + EP K
Sbjct: 259 PNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNAMKQGRFAVKNLEEPVK 318
>pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas
Aeruginosa.
pdb|2V3B|A Chain A, Crystal Structure Of The Electron Transfer Complex
Rubredoxin - Rubredoxin Reductase From Pseudomonas
Aeruginosa
Length = 384
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 126/269 (46%), Gaps = 24/269 (8%)
Query: 33 LCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEHGIELVLGT 92
L +I+ + Y +P LS G+ + L GA E+L + ++ T
Sbjct: 32 LLMITADDGRSYSKPMLSTGFSKNKDADGLAMAEP--GAMAEQLNAR--------ILTHT 81
Query: 93 RVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCY-LRDLADAN 151
RV D + + E + Y+ L++A GA +++ G DA++ Y + DL D
Sbjct: 82 RVTGIDPGHQRIWIGE-EEVRYRDLVLAWGAEPIRVPVEG----DAQDALYPINDLEDYA 136
Query: 152 RLVNVMKSCSGGNAVVI-GGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYY 210
R ++ +G V++ G G IG E A L + +V P M L P A
Sbjct: 137 RF---RQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAV 193
Query: 211 EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL-FEG 269
+ + GV+F G VL+S G+ + +L DG +P D+VV +G+RP T L F
Sbjct: 194 QAGLEGLGVRFHLGPVLASLK--KAGEGLEAHLSDGEVIPCDLVVSAVGLRPRTELAFAA 251
Query: 270 QLTLEKGGIKVTGRLQSSNSSVYAVGDVA 298
L + + GI V L++S++++YA+GD A
Sbjct: 252 GLAVNR-GIVVDRSLRTSHANIYALGDCA 279
>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
pdb|3NTD|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
Length = 565
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 29/206 (14%)
Query: 113 SYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGY 172
SY L+++ GA + + G D LR++ D +R++ ++ + +A V+GGG+
Sbjct: 105 SYDTLLLSPGAAPIVPP---IPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGF 161
Query: 173 IGMECAASLVINKINVTMVFPEAHCMARLFTP---KIASYYEEYYKSKGVKFVKGTVLS- 228
IG+E SL I T++ ++ TP ++A + + + +GV GT LS
Sbjct: 162 IGLEMMESLHHLGIKTTLL----ELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSE 217
Query: 229 -SFDV------DSNGKVVA---------VNLRDGNRLPTDMVVVGIGIRPNTSLFE--GQ 270
S+ V D+ G+ A + L +G L TD++++ IG+RP T L G
Sbjct: 218 VSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGL 277
Query: 271 LTLEKGGIKVTGRLQSSNSSVYAVGD 296
E GGIKV +Q+S+ ++YAVGD
Sbjct: 278 AIGELGGIKVNAMMQTSDPAIYAVGD 303
>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICR|B Chain B, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICS|A Chain A, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICS|B Chain B, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICT|A Chain A, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
pdb|3ICT|B Chain B, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
Length = 588
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 107/197 (54%), Gaps = 9/197 (4%)
Query: 102 KTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCS 161
K + T +Y +LI++ GA+ + G+ +A+ + LR++ D +R+ +
Sbjct: 129 KNVTTNETYNEAYDVLILSPGAKPIVPSIPGIE--EAKALFTLRNVPDTDRIKAYIDEKK 186
Query: 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKF 221
+A VIGGG+IG+E +L I VT+V A+ + + A+Y E+ K+ V+
Sbjct: 187 PRHATVIGGGFIGVEXVENLRERGIEVTLV-EXANQVXPPIDYEXAAYVHEHXKNHDVEL 245
Query: 222 VKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKGGIK 279
V + + + NG V V L+ G+ + TD +++ IG++P +SL +G L L +G IK
Sbjct: 246 VFEDGVDAL--EENGAV--VRLKSGSVIQTDXLILAIGVQPESSLAKGAGLALGVRGTIK 301
Query: 280 VTGRLQSSNSSVYAVGD 296
V + Q+S+ +YA+GD
Sbjct: 302 VNEKFQTSDPHIYAIGD 318
>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
pdb|3NT6|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
Length = 574
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 101/206 (49%), Gaps = 29/206 (14%)
Query: 113 SYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGY 172
SY L+++ GA + + G D LR++ D +R++ ++ + +A V+GGG+
Sbjct: 105 SYDTLLLSPGAAPIVPP---IPGVDNPLTHSLRNIPDXDRILQTIQXNNVEHATVVGGGF 161
Query: 173 IGMECAASLVINKINVTMVFPEAHCMARLFTP---KIASYYEEYYKSKGVKFVKGTVLS- 228
IG+E SL I T++ ++ TP + A + + + +GV GT LS
Sbjct: 162 IGLEXXESLHHLGIKTTLL----ELADQVXTPVDREXAGFAHQAIRDQGVDLRLGTALSE 217
Query: 229 -SFDV------DSNGKVVA---------VNLRDGNRLPTDMVVVGIGIRPNTSLFE--GQ 270
S+ V D+ G+ A + L +G L TD+++ IG+RP T L G
Sbjct: 218 VSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIXAIGVRPETQLARDAGL 277
Query: 271 LTLEKGGIKVTGRLQSSNSSVYAVGD 296
E GGIKV Q+S+ ++YAVGD
Sbjct: 278 AIGELGGIKVNAXXQTSDPAIYAVGD 303
>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
pdb|3NTA|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
Length = 574
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 101/206 (49%), Gaps = 29/206 (14%)
Query: 113 SYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGY 172
SY L+++ GA + + G D LR++ D +R++ ++ + +A V+GGG+
Sbjct: 105 SYDTLLLSPGAAPIVPP---IPGVDNPLTHSLRNIPDXDRILQTIQXNNVEHATVVGGGF 161
Query: 173 IGMECAASLVINKINVTMVFPEAHCMARLFTP---KIASYYEEYYKSKGVKFVKGTVLS- 228
IG+E SL I T++ ++ TP + A + + + +GV GT LS
Sbjct: 162 IGLEXXESLHHLGIKTTLL----ELADQVXTPVDREXAGFAHQAIRDQGVDLRLGTALSE 217
Query: 229 -SFDV------DSNGKVVA---------VNLRDGNRLPTDMVVVGIGIRPNTSLFE--GQ 270
S+ V D+ G+ A + L +G L TD+++ IG+RP T L G
Sbjct: 218 VSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIXAIGVRPETQLARDAGL 277
Query: 271 LTLEKGGIKVTGRLQSSNSSVYAVGD 296
E GGIKV Q+S+ ++YAVGD
Sbjct: 278 AIGELGGIKVNAXXQTSDPAIYAVGD 303
>pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus
Pfu-1140779- 001
Length = 367
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 105/398 (26%), Positives = 180/398 (45%), Gaps = 59/398 (14%)
Query: 21 LEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTP-- 78
E K+ E+ +I +EPV Y +P LS Y+ P RL P
Sbjct: 21 FELAKQLSQTYEVTVIDKEPVPYYSKPMLSH-YIAGFIP-------------RNRLFPYS 66
Query: 79 -KWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSD 137
WY + GIE+ L K D RK ++T GE + Y L++ATGARA + + G
Sbjct: 67 LDWYRKRGIEIRLAEEAKLIDRGRKVVITEKGE-VPYDTLVLATGARAREPQIKG----- 120
Query: 138 AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 197
E + LR + DA+R+ +++ G A++IGGG+IG+E A +L +V ++ A
Sbjct: 121 KEYLLTLRTIFDADRIKESIENS--GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF 178
Query: 198 MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG 257
+ ++++ ++ + GVKF L+S +++N + V N + + +
Sbjct: 179 LG--LDEELSNMIKDMLEETGVKF----FLNSELLEANEEGVLTN---SGFIEGKVKICA 229
Query: 258 IGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSA 317
IGI PN L GI + ++S VYA+GD A + + G + +A
Sbjct: 230 IGIVPNVDLARRSGIHTGRGILIDDNFRTSAKDVYAIGDCAEYSGIIAGTAK------AA 283
Query: 318 RKSAKHAVAAIM--EPDKTD-KFDYLPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTTFG 374
+ A+ +A I+ EP + + KF F + + L G+ GE G +
Sbjct: 284 MEQAR-VLADILKGEPRRYNFKFRSTVFKFGK---LQIAIIGNTKGE----GKWIEDNTK 335
Query: 375 AYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDL 412
++ N G+++G+ + + I KAT+L+ + D
Sbjct: 336 VFYEN-GKIIGAVV-------FNDIRKATKLEKEILDF 365
>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
pdb|2BC0|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
Length = 490
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 108/228 (47%), Gaps = 15/228 (6%)
Query: 85 GIELVLGTRVKSADVRRKT---LVTATGETISYKILIIATGARAL-------KLEEFGLS 134
G ++ + + V+S D KT LV +Y LI ATG++ + +++E L
Sbjct: 106 GAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKGAEIKEGSLE 165
Query: 135 -GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFP 193
+ EN+ +++ ++ ++ +++ V+G GYIG+E A + V ++
Sbjct: 166 FEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDV 225
Query: 194 EAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDM 253
C+A + + + + G++ G + +V NGKV + + D N DM
Sbjct: 226 VDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVK--EVAGNGKVEKI-ITDKNEYDVDM 282
Query: 254 VVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAF 300
V++ +G RPNT+L G++ L G V R ++S VYA+GD A
Sbjct: 283 VILAVGFRPNTTLGNGKIDLFRNGAFLVNKRQETSIPGVYAIGDCATI 330
>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BC1|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BCP|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
pdb|2BCP|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
Length = 490
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 108/226 (47%), Gaps = 15/226 (6%)
Query: 85 GIELVLGTRVKSADVRRKT---LVTATGETISYKILIIATGARAL-------KLEEFGLS 134
G ++ + + V+S D KT LV +Y LI ATG++ + +++E L
Sbjct: 106 GAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKGAEIKEGSLE 165
Query: 135 -GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFP 193
+ EN+ +++ ++ ++ +++ V+G GYIG+E A + V ++
Sbjct: 166 FEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDV 225
Query: 194 EAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDM 253
C+A + + + + G++ G + +V NGKV + + D N DM
Sbjct: 226 VDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVK--EVAGNGKVEKI-ITDKNEYDVDM 282
Query: 254 VVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVA 298
V++ +G RPNT+L G++ L G V R ++S VYA+GD A
Sbjct: 283 VILAVGFRPNTTLGNGKIDLFRNGAFLVNKRQETSIPGVYAIGDCA 328
>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine
Nucleotide-Disulphide Oxidoreductase From Desulfovibrio
Vulgaris
Length = 472
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 113/239 (47%), Gaps = 14/239 (5%)
Query: 78 PKWYN-EHGIELVLGTRVKSAD-----VRRKTLVTATGETISYKILIIATGARALKLEEF 131
P+++ +E ++ TR + D V + L T T+ Y L++A G++A +
Sbjct: 72 PEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPP-- 129
Query: 132 GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLV-INKINVTM 190
+ G D V + +L +A + + + + AV++GGG+IG+E A SL + I+ T+
Sbjct: 130 -VEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTV 188
Query: 191 VFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLP 250
V M + ++ + V G + + NGKV V + D L
Sbjct: 189 VELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLE-GENGKVARV-ITDKRTLD 246
Query: 251 TDMVVVGIGIRPNTSLF-EGQLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGE 307
D+V++ G+ PNT L + L L+ +G I V R+++S+ ++A GD P + G+
Sbjct: 247 ADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIPNLVTGK 305
>pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MO9|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MOK|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|C Chain C, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|D Chain D, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|2C3D|A Chain A, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme M
Oxidoreductase Carboxylase With A Coenzyme M Disulfide
Bound At The Active Site
pdb|2C3D|B Chain B, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme M
Oxidoreductase Carboxylase With A Coenzyme M Disulfide
Bound At The Active Site
pdb|2C3C|A Chain A, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed Disulfide
Between Coenzyme M And Nadph-Dependent Oxidoreductase 2-
Ketopropyl Coenzyme M Carboxylase
pdb|2C3C|B Chain B, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed Disulfide
Between Coenzyme M And Nadph-Dependent Oxidoreductase 2-
Ketopropyl Coenzyme M Carboxylase
pdb|3Q6J|A Chain A, Structural Basis For Carbon Dioxide Binding By
2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE
pdb|3Q6J|B Chain B, Structural Basis For Carbon Dioxide Binding By
2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE
Length = 523
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 122/283 (43%), Gaps = 35/283 (12%)
Query: 86 IELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLR 145
+E +L K D V A G+ K LI+A GA L+ + G +A+ V
Sbjct: 150 LEYILNCPAKVID---NHTVEAAGKVFKAKNLILAVGAGPGTLD---VPGVNAKGVF--- 200
Query: 146 DLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASL-VINKINVTMVFPEAHCMARLFTP 204
D LV + G VV+GG +E + V +V E + +
Sbjct: 201 ---DHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP--LKLIKDN 255
Query: 205 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN---RLPTDMVVVGIGIR 261
+ +Y + K +G++ + G+ ++ + D+NG+V AV N R+ TD V +G+G +
Sbjct: 256 ETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQ 315
Query: 262 PNTSLFEGQLTLE---KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSAR 318
P ++ L L+ KG + V LQ+S +VYAVGD+ P+++ AR
Sbjct: 316 PRSAELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPMEMF----------KAR 365
Query: 319 KSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGE 361
KS +A +M +K Y P Y ++ +GE
Sbjct: 366 KSGCYAARNVM----GEKISYTPKNYPDFLHTHYEVSFLGMGE 404
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 96/203 (47%), Gaps = 26/203 (12%)
Query: 108 TGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVV 167
+ +T ++K IIATG+R ++L F S + D A L V KS VV
Sbjct: 128 SAQTYTFKNAIIATGSRPIELPNFKFSNR-------ILDSTGALNLGEVPKSL-----VV 175
Query: 168 IGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVL 227
IGGGYIG+E + VT++ ++ F ++A+ ++ K KGV+ V +
Sbjct: 176 IGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVEVVTNALA 234
Query: 228 SSFDVDSNGKVVAVNLR-DGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGR--- 283
+ +G V + + D V+V +G RPNT +L LE+ GIK+T R
Sbjct: 235 KGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTD----ELGLEQIGIKMTNRGLI 290
Query: 284 -----LQSSNSSVYAVGDVAAFP 301
++S +++A+GD+ P
Sbjct: 291 EVDQQCRTSVPNIFAIGDIVPGP 313
>pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide
Dehydrogenase Complexed With Nad+ At 2.45 Angstroms
Resolution
Length = 458
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 105/236 (44%), Gaps = 27/236 (11%)
Query: 74 ERLT---PKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEE 130
+RLT +HG+++V G A V V G+ I + L++ATG+ +++L
Sbjct: 96 DRLTTGVAALLKKHGVKVVHGW----AKVLDGKQVEVDGQRIQCEHLLLATGSSSVELPM 151
Query: 131 FGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTM 190
L G + L A LV V+GGGYIG+E + V++
Sbjct: 152 LPLGGPVISSTEALAPKALPQHLV------------VVGGGYIGLELGIAYRKLGAQVSV 199
Query: 191 VFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-RL 249
V + + ++ + E K G+ G + ++ NG ++A + + G RL
Sbjct: 200 VEARERILPT-YDSELTAPVAESLKKLGIALHLGHSVEGYE---NGCLLANDGKGGQLRL 255
Query: 250 PTDMVVVGIGIRPNTSLFEGQ---LTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPL 302
D V+V +G RP T F + L + I + R Q+S +V+A+GDVA P+
Sbjct: 256 EADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDERCQTSMHNVWAIGDVAGEPM 311
>pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQX|B Chain B, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 109/247 (44%), Gaps = 30/247 (12%)
Query: 77 TP-KWYNEHGIELVLGTRVKSADVRRKT---LVTATGETI--SYKILIIATGARALKLEE 130
TP K+Y+ I + V + + R+T L T E SY LI++ GA A L
Sbjct: 62 TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 131 FGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTM 190
G +++ LR+L D + + +K+ +V+G GY+ +E +L ++ T+
Sbjct: 120 ----GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTL 175
Query: 191 VFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLP 250
+ + + +L + + + + + +++ NG + + G
Sbjct: 176 IH-RSDKINKLMDADMNQPILDELDKREIPYRLNEEINAI----NGN--EITFKSGKVEH 228
Query: 251 TDMVVVGIGIRPNTSLFEG-QLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGET 308
DM++ G+G PN+ E + L+ KG I V + +++ ++YA+GD+A T
Sbjct: 229 YDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIA---------T 279
Query: 309 RRLEHVD 315
HVD
Sbjct: 280 SHYRHVD 286
>pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQS|B Chain B, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 109/247 (44%), Gaps = 30/247 (12%)
Query: 77 TP-KWYNEHGIELVLGTRVKSADVRRKT---LVTATGETI--SYKILIIATGARALKLEE 130
TP K+Y+ I + V + + R+T L T E SY LI++ GA A L
Sbjct: 62 TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 131 FGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTM 190
G +++ LR+L D + + +K+ +V+G GY+ +E +L ++ T+
Sbjct: 120 ----GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTL 175
Query: 191 VFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLP 250
+ + + +L + + + + + +++ NG + + G
Sbjct: 176 IH-RSDKINKLMDADMNQPILDELDKREIPYRLNEEINAI----NGN--EITFKSGKVEH 228
Query: 251 TDMVVVGIGIRPNTSLFEG-QLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGET 308
DM++ G+G PN+ E + L+ KG I V + +++ ++YA+GD+A T
Sbjct: 229 YDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIA---------T 279
Query: 309 RRLEHVD 315
HVD
Sbjct: 280 SHYRHVD 286
>pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQR|B Chain B, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 109/247 (44%), Gaps = 30/247 (12%)
Query: 77 TP-KWYNEHGIELVLGTRVKSADVRRKT---LVTATGETI--SYKILIIATGARALKLEE 130
TP K+Y+ I + V + + R+T L T E SY LI++ GA A L
Sbjct: 62 TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 131 FGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTM 190
G +++ LR+L D + + +K+ +V+G GY+ +E +L ++ T+
Sbjct: 120 ----GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTL 175
Query: 191 VFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLP 250
+ + + +L + + + + + +++ NG + + G
Sbjct: 176 IH-RSDKINKLMDADMNQPILDELDKREIPYRLNEEINAI----NGN--EITFKSGKVEH 228
Query: 251 TDMVVVGIGIRPNTSLFEG-QLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGET 308
DM++ G+G PN+ E + L+ KG I V + +++ ++YA+GD+A T
Sbjct: 229 YDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIA---------T 279
Query: 309 RRLEHVD 315
HVD
Sbjct: 280 SHYRHVD 286
>pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
pdb|4EQW|B Chain B, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
Length = 437
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 109/247 (44%), Gaps = 30/247 (12%)
Query: 77 TP-KWYNEHGIELVLGTRVKSADVRRKT---LVTATGETI--SYKILIIATGARALKLEE 130
TP K+Y+ I + V + + R+T L T E SY LI++ GA A L
Sbjct: 62 TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 131 FGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTM 190
G +++ LR+L D + + +K+ +V+G GY+ +E +L ++ T+
Sbjct: 120 ----GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTL 175
Query: 191 VFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLP 250
+ + + +L + + + + + +++ NG + + G
Sbjct: 176 IH-RSDKINKLMDADMNQPILDELDKREIPYRLNEEINAI----NGN--EITFKSGKVEH 228
Query: 251 TDMVVVGIGIRPNTSLFEG-QLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGET 308
DM++ G+G PN+ E + L+ KG I V + +++ ++YA+GD+A T
Sbjct: 229 YDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIA---------T 279
Query: 309 RRLEHVD 315
HVD
Sbjct: 280 SHYRHVD 286
>pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM3|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM4|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
pdb|4EM4|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
Length = 437
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 109/247 (44%), Gaps = 30/247 (12%)
Query: 77 TP-KWYNEHGIELVLGTRVKSADVRRKT---LVTATGETI--SYKILIIATGARALKLEE 130
TP K+Y+ I + V + + R+T L T E SY LI++ GA A L
Sbjct: 62 TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 131 FGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTM 190
G +++ LR+L D + + +K+ +V+G GY+ +E +L ++ T+
Sbjct: 120 ----GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTL 175
Query: 191 VFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLP 250
+ + + +L + + + + + +++ NG + + G
Sbjct: 176 IH-RSDKINKLMDADMNQPILDELDKREIPYRLNEEINAI----NGN--EITFKSGKVEH 228
Query: 251 TDMVVVGIGIRPNTSLFEG-QLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGET 308
DM++ G+G PN+ E + L+ KG I V + +++ ++YA+GD+A T
Sbjct: 229 YDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIA---------T 279
Query: 309 RRLEHVD 315
HVD
Sbjct: 280 SHYRHVD 286
>pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
pdb|4EMW|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
Length = 436
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 109/247 (44%), Gaps = 30/247 (12%)
Query: 77 TP-KWYNEHGIELVLGTRVKSADVRRKT---LVTATGETI--SYKILIIATGARALKLEE 130
TP K+Y+ I + V + + R+T L T E SY LI++ GA A L
Sbjct: 62 TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 131 FGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTM 190
G +++ LR+L D + + +K+ +V+G GY+ +E +L ++ T+
Sbjct: 120 ----GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTL 175
Query: 191 VFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLP 250
+ + + +L + + + + + +++ NG + + G
Sbjct: 176 IH-RSDKINKLMDADMNQPILDELDKREIPYRLNEEINAI----NGN--EITFKSGKVEH 228
Query: 251 TDMVVVGIGIRPNTSLFEG-QLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGET 308
DM++ G+G PN+ E + L+ KG I V + +++ ++YA+GD+A T
Sbjct: 229 YDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIA---------T 279
Query: 309 RRLEHVD 315
HVD
Sbjct: 280 SHYRHVD 286
>pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
pdb|1YQZ|B Chain B, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
Length = 438
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 109/247 (44%), Gaps = 30/247 (12%)
Query: 77 TP-KWYNEHGIELVLGTRVKSADVRRKT---LVTATGETI--SYKILIIATGARALKLEE 130
TP K+Y+ I + V + + R+T L T E SY LI++ GA A L
Sbjct: 63 TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 120
Query: 131 FGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTM 190
G +++ LR+L D + + +K+ +V+G GY+ +E +L ++ T+
Sbjct: 121 ----GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTL 176
Query: 191 VFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLP 250
+ + + +L + + + + + +++ NG + + G
Sbjct: 177 IH-RSDKINKLMDADMNQPILDELDKREIPYRLNEEINAI----NGN--EITFKSGKVEH 229
Query: 251 TDMVVVGIGIRPNTSLFEG-QLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGET 308
DM++ G+G PN+ E + L+ KG I V + +++ ++YA+GD+A T
Sbjct: 230 YDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIA---------T 280
Query: 309 RRLEHVD 315
HVD
Sbjct: 281 SHYRHVD 287
>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
Length = 455
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 93/213 (43%), Gaps = 32/213 (15%)
Query: 101 RKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSC 160
RK LV TGE + + ++IATG+ L D R+V ++
Sbjct: 117 RKVLVEETGEELEARYILIATGSAPL---------------IPPWAQVDYERVVTSTEAL 161
Query: 161 S----GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTP---KIASYYEEY 213
S +V+GGG IG+E +V +++ ++ E M R+ +++ E
Sbjct: 162 SFPEVPKRLIVVGGGVIGLEL--GVVWHRLGAEVIVLE--YMDRILPTMDLEVSRAAERV 217
Query: 214 YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE----G 269
+K +G+ G +++ ++ G V L G L D V+V +G RP T G
Sbjct: 218 FKKQGLTIRTGVRVTAVVPEAKG--ARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAG 275
Query: 270 QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPL 302
T E+G I V L++ +YA+GDV P+
Sbjct: 276 LSTDERGRIPVDEHLRTRVPHIYAIGDVVRGPM 308
>pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From
Clostridium Acetobutylicum
Length = 385
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 117/273 (42%), Gaps = 41/273 (15%)
Query: 32 ELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEHGIELVLG 91
++ +I+ E PY RP L+ E A+ S + + WY ++ I+++
Sbjct: 34 DITMINSEKYLPYYRPRLN------EIIAKNKSIDDILIKKND-----WYEKNNIKVITS 82
Query: 92 TRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADAN 151
S D K + +GE I Y+ LIIA+G+ A K++ A+ + L DA
Sbjct: 83 EFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANKIKV-----PHADEIFSLYSYDDAL 137
Query: 152 RLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN----KINVTMVFPEAHCMARLFTPKIA 207
++ + K + G A +IGGG +G+E A +++ + I + + +P + R
Sbjct: 138 KIKDECK--NKGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYP----LERQLDRDGG 191
Query: 208 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF 267
+ ++ G+K + G+ + + V+ +G++PN
Sbjct: 192 LFLKDKLDRLGIKIYTNSNFEEM---------------GDLIRSSCVITAVGVKPNLDFI 236
Query: 268 EGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAF 300
+ K GI V +++S +YA GDVA F
Sbjct: 237 KDTEIASKRGILVNDHMETSIKDIYACGDVAEF 269
>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
pdb|3O0H|B Chain B, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
Length = 484
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 96/202 (47%), Gaps = 29/202 (14%)
Query: 105 VTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGN 164
++ TGE IS + ++IATGA+ + + GSD +C +N + ++ K +
Sbjct: 146 LSVTGERISAEKILIATGAKIVS--NSAIKGSD---LCL-----TSNEIFDLEKLPK--S 193
Query: 165 AVVIGGGYIGMECAASLVINKINV-TMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK 223
V++GGGYIG+E A + + + V T + + R F + + +KG+ +
Sbjct: 194 IVIVGGGYIGVEFAN--IFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIY 251
Query: 224 GTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVT-- 281
+S V S V L +G + D V++ G PNT+ L LE+ G+KV
Sbjct: 252 EATVSQ--VQSTENCYNVVLTNGQTICADRVMLATGRVPNTT----GLGLERAGVKVNEF 305
Query: 282 ------GRLQSSNSSVYAVGDV 297
++ ++ S ++AVGDV
Sbjct: 306 GAVVVDEKMTTNVSHIWAVGDV 327
>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|B Chain B, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|C Chain C, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|D Chain D, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|E Chain E, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|F Chain F, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|G Chain G, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|H Chain H, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|I Chain I, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|J Chain J, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 474
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 8/145 (5%)
Query: 166 VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 225
VVIG G IG+E + +VT V H +I+ ++ + +G KF T
Sbjct: 182 VVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNT 241
Query: 226 VLSSFDVDSNGKV-VAVNLRDGNR---LPTDMVVVGIGIRP---NTSLFEGQLTLE-KGG 277
++ S+GK+ V++ G + + D+++V IG RP N L E + L+ +G
Sbjct: 242 KVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGR 301
Query: 278 IKVTGRLQSSNSSVYAVGDVAAFPL 302
I V R Q+ ++YA+GDV A P+
Sbjct: 302 IPVNTRFQTKIPNIYAIGDVVAGPM 326
>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMD|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|2F5Z|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|I Chain I, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|J Chain J, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
Length = 474
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 8/145 (5%)
Query: 166 VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 225
VVIG G IG+E + +VT V H +I+ ++ + +G KF T
Sbjct: 182 VVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNT 241
Query: 226 VLSSFDVDSNGKV-VAVNLRDGNR---LPTDMVVVGIGIRP---NTSLFEGQLTLE-KGG 277
++ S+GK+ V++ G + + D+++V IG RP N L E + L+ +G
Sbjct: 242 KVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGR 301
Query: 278 IKVTGRLQSSNSSVYAVGDVAAFPL 302
I V R Q+ ++YA+GDV A P+
Sbjct: 302 IPVNTRFQTKIPNIYAIGDVVAGPM 326
>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|B Chain B, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|C Chain C, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|D Chain D, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
Length = 495
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 8/145 (5%)
Query: 166 VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 225
VVIG G IG+E + +VT V H +I+ ++ + +G KF T
Sbjct: 203 VVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNT 262
Query: 226 VLSSFDVDSNGKV-VAVNLRDGNR---LPTDMVVVGIGIRP---NTSLFEGQLTLE-KGG 277
++ S+GK+ V++ G + + D+++V IG RP N L E + L+ +G
Sbjct: 263 KVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGR 322
Query: 278 IKVTGRLQSSNSSVYAVGDVAAFPL 302
I V R Q+ ++YA+GDV A P+
Sbjct: 323 IPVNTRFQTKIPNIYAIGDVVAGPM 347
>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GER|B Chain B, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GET|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GET|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 88/204 (43%), Gaps = 24/204 (11%)
Query: 99 VRRKTLVTATGETISYKILIIATGARALKLEEFGLS-GSDAENVCYLRDLADANRLVNVM 157
V KTL GETI+ ++IATG R + G+ G D++ L L +
Sbjct: 118 VDAKTL-EVNGETITADHILIATGGRPSHPDIPGVEYGIDSDGFFALPALPE-------- 168
Query: 158 KSCSGGNAVVIGGGYIGMECAASLVINKINV-TMVFPEAHCMARLFTPKIASYYEEYYKS 216
V+G GYI +E A VIN + T +F H R F P I+ E +
Sbjct: 169 ------RVAVVGAGYIAVELAG--VINGLGAKTHLFVRKHAPLRSFDPMISETLVEVMNA 220
Query: 217 KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP---NTSLFEGQLTL 273
+G + + + +++G + + L DG D ++ IG P N +L +
Sbjct: 221 EGPQLHTNAIPKAVVKNTDGSLT-LELEDGRSETVDCLIWAIGREPANDNINLEAAGVKT 279
Query: 274 EKGGIKVTGRLQSSN-SSVYAVGD 296
+ G V + Q++N +YAVGD
Sbjct: 280 NEKGYIVVDKYQNTNIEGIYAVGD 303
>pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From
Sinorhizobium Meliloti 1021
pdb|4DNA|B Chain B, Crystal Structure Of Putative Glutathione Reductase From
Sinorhizobium Meliloti 1021
Length = 463
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 97/218 (44%), Gaps = 29/218 (13%)
Query: 89 VLGTRVKSADVRRKTLVTATGETISYKILIIATGAR-----ALKLEEFGLSGSDAENVCY 143
+L TR + A L+ A+G+T++ + ++IA G AL E ++ ++A ++
Sbjct: 110 ILDTRAELAGPNTVKLL-ASGKTVTAERIVIAVGGHPSPHDALPGHELCITSNEAFDLPA 168
Query: 144 LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT 203
L + + ++ GGGYI +E A + T+++ ++R F
Sbjct: 169 LPE-----------------SILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSR-FD 210
Query: 204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 263
+ KG++ + ++ S D++G+ VA + G + D V + +G PN
Sbjct: 211 QDXRRGLHAAXEEKGIRILCEDIIQSVSADADGRRVATTXKHGE-IVADQVXLALGRXPN 269
Query: 264 TSLF----EGQLTLEKGGIKVTGRLQSSNSSVYAVGDV 297
T+ G T E G I V ++S +YA+GDV
Sbjct: 270 TNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGDV 307
>pdb|3OC4|A Chain A, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
pdb|3OC4|B Chain B, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
Length = 452
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 71/320 (22%), Positives = 135/320 (42%), Gaps = 28/320 (8%)
Query: 24 TKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEER-LTPKWYN 82
+++ P E+ +I ++ Y LS + HT +E R +T +
Sbjct: 21 SRKKYPQAEISLIDKQATVGYLSGGLSAYF-----------NHTINELHEARYITEEELR 69
Query: 83 EHGIELVLGTRVKSADVRRKTLVTATGET---ISYKILIIATGARALKLEEFGLSGSDAE 139
I+L+L V + DV + + E SY LI+ATGA + + GS E
Sbjct: 70 RQKIQLLLNREVVAXDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQ---IRGSQTE 126
Query: 140 NVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 199
+ + L+ A V ++++ VIG G IG E LV K V + + +
Sbjct: 127 KLLKYKFLSGALAAVPLLENSQ--TVAVIGAGPIGXEAIDFLVKXKKTVHVFESLENLLP 184
Query: 200 RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 259
+ F + + ++ + + V F + + +NG V+ + ++ + D + +
Sbjct: 185 KYFDKEXVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQE---ISCDSGIFALN 241
Query: 260 IRPNTSLFEG--QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSA 317
+ P + + Q L++ I V LQ+S +V+A+GD + + + ET V++A
Sbjct: 242 LHPQLAYLDKKIQRNLDQT-IAVDAYLQTSVPNVFAIGDCISVXNEPVAETFYAPLVNNA 300
Query: 318 RKSAKHAVAAIMEPDKTDKF 337
++ V A +KT +F
Sbjct: 301 VRTG--LVVANNLEEKTHRF 318
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 92/209 (44%), Gaps = 39/209 (18%)
Query: 111 TISYKILIIATGARALKLE-----EFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNA 165
TI+ +I+ATG R E E+G++ D ++ Y G
Sbjct: 247 TITGNKIILATGERPKYPEIPGAVEYGITSDDLFSLPYFP-----------------GKT 289
Query: 166 VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 225
+VIG Y+ +ECA L +VT++ + R F ++A +Y ++ GVKF K
Sbjct: 290 LVIGASYVALECAGFLASLGGDVTVMVRSI--LLRGFDQQMAEKVGDYMENHGVKFAKLC 347
Query: 226 V------LSSFDVDSNGK---VVAVNLRDGNRLPTDM--VVVGIGIRPNTSLFEGQ---L 271
V L D ++N +V + DG + + V+ +G P S + +
Sbjct: 348 VPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGV 407
Query: 272 TLEKGG-IKVTGRLQSSNSSVYAVGDVAA 299
L+K G + T Q++ S+VYA+GD+ A
Sbjct: 408 KLDKNGRVVCTDDEQTTVSNVYAIGDINA 436
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 92/209 (44%), Gaps = 39/209 (18%)
Query: 111 TISYKILIIATGARALKLE-----EFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNA 165
TI+ +I+ATG R E E+G++ D ++ Y G
Sbjct: 247 TITGNKIILATGERPKYPEIPGAVEYGITSDDLFSLPYFP-----------------GKT 289
Query: 166 VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 225
+VIG Y+ +ECA L +VT++ + R F ++A +Y ++ GVKF K
Sbjct: 290 LVIGASYVALECAGFLASLGGDVTVMVRSI--LLRGFDQQMAEKVGDYMENHGVKFAKLC 347
Query: 226 V------LSSFDVDSNGK---VVAVNLRDGNRLPTDM--VVVGIGIRPNTSLFEGQ---L 271
V L D ++N +V + DG + + V+ +G P S + +
Sbjct: 348 VPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGV 407
Query: 272 TLEKGG-IKVTGRLQSSNSSVYAVGDVAA 299
L+K G + T Q++ S+VYA+GD+ A
Sbjct: 408 KLDKNGRVVCTDDEQTTVSNVYAIGDINA 436
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 92/209 (44%), Gaps = 39/209 (18%)
Query: 111 TISYKILIIATGARALKLE-----EFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNA 165
TI+ +I+ATG R E E+G++ D ++ Y G
Sbjct: 247 TITGNKIILATGERPKYPEIPGAVEYGITSDDLFSLPYFP-----------------GKT 289
Query: 166 VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 225
+VIG Y+ +ECA L +VT++ + R F ++A +Y ++ GVKF K
Sbjct: 290 LVIGASYVALECAGFLASLGGDVTVMVRSI--LLRGFDQQMAEKVGDYMENHGVKFAKLC 347
Query: 226 V------LSSFDVDSNGK---VVAVNLRDGNRLPTDM--VVVGIGIRPNTSLFEGQ---L 271
V L D ++N +V + DG + + V+ +G P S + +
Sbjct: 348 VPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGV 407
Query: 272 TLEKGG-IKVTGRLQSSNSSVYAVGDVAA 299
L+K G + T Q++ S+VYA+GD+ A
Sbjct: 408 KLDKNGRVVCTDDEQTTVSNVYAIGDINA 436
>pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin
Reductase, C- Terminal 3-Residue Truncation
Length = 488
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 90/209 (43%), Gaps = 48/209 (22%)
Query: 112 ISYKILIIATGAR---------ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSG 162
+S + ++IATG R AL E+G++ D + +L++ S
Sbjct: 146 LSAEHIVIATGGRPRYPTQVKGAL---EYGITSDD---IFWLKE--------------SP 185
Query: 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
G +V+G Y+ +ECA L ++ T++ R F +++S E+ +S G +F+
Sbjct: 186 GKTLVVGASYVALECAGFLTGIGLDTTVMMRS--IPLRGFDQQMSSLVTEHMESHGTQFL 243
Query: 223 KGTVLSSF-DVDSNGKVVAVNLRDGNRLPT---DMVVVGIGIRPNTSLFEGQLTLEKGGI 278
KG V S + +N V + T D V+ IG P T L LEK GI
Sbjct: 244 KGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRT----LNLEKAGI 299
Query: 279 KVTGRLQ---------SSNSSVYAVGDVA 298
+ Q +S +YA+GDVA
Sbjct: 300 STNPKNQKIIVDAQEATSVPHIYAIGDVA 328
>pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila
Melanogaster
Length = 488
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 30/210 (14%)
Query: 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
G +V+G GYIG+ECA L T++ + R F ++A + +G+ F+
Sbjct: 188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMV--RSIVLRGFDQQMAELVAASMEERGIPFL 245
Query: 223 KGTVLSSFDVDSNGKVVA--VNLRDGNRLPT--DMVVVGI---GIRPNTSLFEGQLTLEK 275
+ TV S + +GK++ N+ G D V+ I G+ + +L +T++K
Sbjct: 246 RKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK 305
Query: 276 GGIKVTGRLQSSNSSVYAVGD----------VAAFPLKLL------GETRRLEHVDSAR- 318
I V + ++ +++YAVGD VA +LL G T+R+++ D A
Sbjct: 306 DKIPVDSQEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATT 365
Query: 319 --KSAKHAVAAIMEPDKTDKF--DYLPFFY 344
++A + E D +F D + F+
Sbjct: 366 VFTPLEYACVGLSEEDAVKQFGADEIEVFH 395
>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile
pdb|2R9Z|B Chain B, Glutathione Amide Reductase From Chromatium Gracile
pdb|2RAB|A Chain A, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
pdb|2RAB|B Chain B, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
Length = 463
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 16/140 (11%)
Query: 167 VIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTV 226
+IG GYIG+E A L VT+V E + + F P +++ E ++G++
Sbjct: 171 IIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ-FDPLLSATLAENMHAQGIETHLEFA 229
Query: 227 LSSFDVDSNGKVVAVNLRDGNRLPT-DMVVVGIGIRPNTSLFEGQLTLEKGGIKV----- 280
+++ + D+ G + +DG RL D V+ +G PNT L LE GI+V
Sbjct: 230 VAALERDAQGTTLVA--QDGTRLEGFDSVIWAVGRAPNTR----DLGLEAAGIEVQSNGM 283
Query: 281 --TGRLQSSN-SSVYAVGDV 297
T Q++N VYA+GD+
Sbjct: 284 VPTDAYQNTNVPGVYALGDI 303
>pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
pdb|3DH9|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
Length = 482
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 30/210 (14%)
Query: 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
G +V+G GYIG+ECA L T++ + R F ++A + +G+ F+
Sbjct: 184 GKTLVVGAGYIGLECAGFLKGLGYEPTVMV--RSIVLRGFDQQMAELVAASMEERGIPFL 241
Query: 223 KGTVLSSFDVDSNGKVVA--VNLRDGNRLPT--DMVVVGI---GIRPNTSLFEGQLTLEK 275
+ TV S + +GK++ N+ G D V+ I G+ + +L +T++K
Sbjct: 242 RKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK 301
Query: 276 GGIKVTGRLQSSNSSVYAVGD----------VAAFPLKLL------GETRRLEHVDSAR- 318
I V + ++ +++YAVGD VA +LL G T+R+++ D A
Sbjct: 302 DKIPVDSQEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATT 361
Query: 319 --KSAKHAVAAIMEPDKTDKF--DYLPFFY 344
++A + E D +F D + F+
Sbjct: 362 VFTPLEYACVGLSEEDAVKQFGADEIEVFH 391
>pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
pdb|3DGH|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
Length = 483
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 30/210 (14%)
Query: 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
G +V+G GYIG+ECA L T++ + R F ++A + +G+ F+
Sbjct: 188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMV--RSIVLRGFDQQMAELVAASMEERGIPFL 245
Query: 223 KGTVLSSFDVDSNGKVVA--VNLRDGNRLPT--DMVVVGI---GIRPNTSLFEGQLTLEK 275
+ TV S + +GK++ N+ G D V+ I G+ + +L +T++K
Sbjct: 246 RKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK 305
Query: 276 GGIKVTGRLQSSNSSVYAVGD----------VAAFPLKLL------GETRRLEHVDSAR- 318
I V + ++ +++YAVGD VA +LL G T+R+++ D A
Sbjct: 306 DKIPVDSQEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATT 365
Query: 319 --KSAKHAVAAIMEPDKTDKF--DYLPFFY 344
++A + E D +F D + F+
Sbjct: 366 VFTPLEYACVGLSEEDAVKQFGADEIEVFH 395
>pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
pdb|1ZKQ|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
Length = 517
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 90/209 (43%), Gaps = 48/209 (22%)
Query: 112 ISYKILIIATGAR---------ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSG 162
+S + ++IATG R AL E+G++ D + +L++ S
Sbjct: 172 LSAEHIVIATGGRPRYPTQVKGAL---EYGITSDD---IFWLKE--------------SP 211
Query: 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
G +V+G Y+ +ECA L ++ T++ R F +++S E+ +S G +F+
Sbjct: 212 GKTLVVGASYVALECAGFLTGIGLDTTVMMRSI--PLRGFDQQMSSLVTEHMESHGTQFL 269
Query: 223 KGTVLSSF-DVDSNGKVVAVNLRDGNRLPT---DMVVVGIGIRPNTSLFEGQLTLEKGGI 278
KG V S + +N V + T D V+ IG P T L LEK GI
Sbjct: 270 KGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETR----TLNLEKAGI 325
Query: 279 KVTGRLQ---------SSNSSVYAVGDVA 298
+ Q +S +YA+GDVA
Sbjct: 326 STNPKNQKIIVDAQEATSVPHIYAIGDVA 354
>pdb|3KD9|A Chain A, Crystal Structure Of Pyridine Nucleotide Disulfide
Oxidoreductase From Pyrococcus Horikoshii
pdb|3KD9|B Chain B, Crystal Structure Of Pyridine Nucleotide Disulfide
Oxidoreductase From Pyrococcus Horikoshii
pdb|3KD9|C Chain C, Crystal Structure Of Pyridine Nucleotide Disulfide
Oxidoreductase From Pyrococcus Horikoshii
Length = 449
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 106/244 (43%), Gaps = 27/244 (11%)
Query: 82 NEHGIELVLGTRVKSADVRRKTLVTATGE-TISYKILIIATGA--RALKLEEFGLSGSDA 138
+ GI+L L V D + GE + + L+ A GA + +E L G
Sbjct: 70 KKRGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQVPAIEGVNLKG--- 126
Query: 139 ENVCYLRDL-ADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 197
+ DL DA + M+ N V+IGGGYIG+E A + NVTM+
Sbjct: 127 ---VFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERV 183
Query: 198 MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG 257
+ R F ++ EE K K V + + ++ +V V + D ++V++
Sbjct: 184 LRRSFDKEVTDILEEKLK-KHVNLRLQEI--TMKIEGEERVEKV-VTDAGEYKAELVILA 239
Query: 258 IGIRPNTSLFE--GQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD 315
GI+PN L + G E G I ++Q+S +VYA GDVA ETR HV
Sbjct: 240 TGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVA--------ETR---HVI 288
Query: 316 SARK 319
+ R+
Sbjct: 289 TGRR 292
>pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
pdb|3AB1|B Chain B, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
Length = 360
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 92/207 (44%), Gaps = 20/207 (9%)
Query: 106 TATGETISYKILIIATGARAL---KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSG 162
T TG + ++IA G A KL + G N+ +L + V ++ G
Sbjct: 112 TNTGNVYRSRAVLIAAGLGAFEPRKLPQLG-------NIDHLTG-SSVYYAVKSVEDFKG 163
Query: 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
V++GGG ++ L+ N +VT+V K A E + +
Sbjct: 164 KRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGH---GKTAHEVERARANGTIDVY 220
Query: 223 KGTVLSSFDVDSNGKVVAVNLR--DGNR--LPTDMVVVGIGIRPNTS-LFEGQLTLEKGG 277
T ++S + +SNG + V+LR DG++ + D +++ IG + N L L L +
Sbjct: 221 LETEVASIE-ESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELYENA 279
Query: 278 IKVTGRLQSSNSSVYAVGDVAAFPLKL 304
+ V +++S +YA GD+A +P KL
Sbjct: 280 LVVDSHMKTSVDGLYAAGDIAYYPGKL 306
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 85/215 (39%), Gaps = 39/215 (18%)
Query: 106 TATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCS---- 161
TA+G + + +IIATGA+ + G + V Y C
Sbjct: 307 TASGAVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYC-------------PHCDGPLF 353
Query: 162 -GGNAVVIGGGYIGMECAASL--VINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKG 218
G VIGGG G+E A L ++ + + PE ++ K+ S K
Sbjct: 354 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA-DQVLQDKVRSL-------KN 405
Query: 219 VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDM-------VVVGIGIRPNTSLFEGQL 271
V + + D + KVV + RD R+ D+ + V IG+ PNT EG L
Sbjct: 406 VDIILNAQTTEVKGDGS-KVVGLEYRD--RVSGDIHSVALAGIFVQIGLLPNTHWLEGAL 462
Query: 272 TLEK-GGIKVTGRLQSSNSSVYAVGDVAAFPLKLL 305
+ G I + + ++S V+A GD P K +
Sbjct: 463 ERNRMGEIIIDAKCETSVKGVFAAGDCTTVPYKQI 497
>pdb|2A87|A Chain A, Crystal Structure Of M. Tuberculosis Thioredoxin Reductase
pdb|2A87|B Chain B, Crystal Structure Of M. Tuberculosis Thioredoxin Reductase
Length = 335
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 106/258 (41%), Gaps = 52/258 (20%)
Query: 102 KTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCS 161
K++VTA G+T + +I+A GA A L+ G + E + R V+ +C
Sbjct: 103 KSVVTADGQTHRARAVILAMGAAARYLQVPG----EQELL---------GRGVSSCATCD 149
Query: 162 G-----GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS 216
G + VIGGG ME A L +VT+V H KI + +
Sbjct: 150 GFFFRDQDIAVIGGGDSAMEEATFLTRFARSVTLV----HRRDEFRASKI--MLDRARNN 203
Query: 217 KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-----RLPTDMVVVGIGIRPNTSLFEGQL 271
++F+ + + D D+ V + +RD N LP V V IG P + L +
Sbjct: 204 DKIRFLTNHTVVAVDGDTT--VTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVREAI 261
Query: 272 TLEKGG-IKVTGRLQSSN-SSVYAVGDVAAFPLKLLGETRR----------LEHVDSARK 319
++ G + V GR S++ V+A GD L+ T R +D+ R
Sbjct: 262 DVDPDGYVLVQGRTTSTSLPGVFAAGD-------LVDRTYRQAVTAAGSGCAAAIDAERW 314
Query: 320 SAKHAVAAIMEPDKTDKF 337
A+H AA E D TD
Sbjct: 315 LAEH--AATGEADSTDAL 330
>pdb|1CL0|A Chain A, Crystal Structure Of Reduced Thioredoxin Reductase From
Escherichia Coli
Length = 320
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 81/202 (40%), Gaps = 43/202 (21%)
Query: 117 LIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSG-----GNAVVIGGG 171
LIIATGA A L GL +A R V+ +C G VIGGG
Sbjct: 108 LIIATGASARYL---GLPSEEAFK----------GRGVSACATCDGFFYRNQKVAVIGGG 154
Query: 172 YIGMECAASLVINKINVTMV-----FPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTV 226
+E A L V ++ F + + K+ + + ++ ++ V G
Sbjct: 155 NTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQ 214
Query: 227 LSSFDVDSNGKVVAVNLRDGNR------LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKV 280
+ V V LRD L + V IG PNT++FEGQL LE G IKV
Sbjct: 215 MG---------VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKV 265
Query: 281 TGRL-----QSSNSSVYAVGDV 297
+ Q+S V+A GDV
Sbjct: 266 QSGIHGNATQTSIPGVFAAGDV 287
>pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GES|B Chain B, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 86/204 (42%), Gaps = 24/204 (11%)
Query: 99 VRRKTLVTATGETISYKILIIATGARALKLEEFGLS-GSDAENVCYLRDLADANRLVNVM 157
V KTL GETI+ ++IATG R + G+ G D++ L L +
Sbjct: 118 VDAKTL-EVNGETITADHILIATGGRPSHPDIPGVEYGIDSDGFFALPALPE-------- 168
Query: 158 KSCSGGNAVVIGGGYIGMECAASLVINKINV-TMVFPEAHCMARLFTPKIASYYEEYYKS 216
V+G GYIG+E VIN + T +F F P I+ E +
Sbjct: 169 ------RVAVVGAGYIGVELGG--VINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNA 220
Query: 217 KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP---NTSLFEGQLTL 273
+G + + + +++G + + L DG D ++ IG P N +L +
Sbjct: 221 EGPQLHTNAIPKAVVKNTDGSLT-LELEDGRSETVDCLIWAIGREPANDNINLEAAGVKT 279
Query: 274 EKGGIKVTGRLQSSN-SSVYAVGD 296
+ G V + Q++N +YAVGD
Sbjct: 280 NEKGYIVVDKYQNTNIEGIYAVGD 303
>pdb|1F6M|A Chain A, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|B Chain B, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|E Chain E, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|F Chain F, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 320
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 81/202 (40%), Gaps = 43/202 (21%)
Query: 117 LIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSG-----GNAVVIGGG 171
LIIATGA A L GL +A R V+ +C G VIGGG
Sbjct: 108 LIIATGASARYL---GLPSEEAFK----------GRGVSASATCDGFFYRNQKVAVIGGG 154
Query: 172 YIGMECAASLVINKINVTMV-----FPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTV 226
+E A L V ++ F + + K+ + + ++ ++ V G
Sbjct: 155 NTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQ 214
Query: 227 LSSFDVDSNGKVVAVNLRDGNR------LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKV 280
+ V V LRD L + V IG PNT++FEGQL LE G IKV
Sbjct: 215 MG---------VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKV 265
Query: 281 TGRL-----QSSNSSVYAVGDV 297
+ Q+S V+A GDV
Sbjct: 266 QSGIHGNATQTSIPGVFAAGDV 287
>pdb|1TDE|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin
Reductase Refined At 2 Angstrom Resolution: Implications
For A Large Conformational Change During Catalysis
Length = 316
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 81/202 (40%), Gaps = 43/202 (21%)
Query: 117 LIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSG-----GNAVVIGGG 171
LIIATGA A L GL +A R V+ +C G VIGGG
Sbjct: 108 LIIATGASARYL---GLPSEEAFK----------GRGVSACATCDGFFYRNQKVAVIGGG 154
Query: 172 YIGMECAASLVINKINVTMV-----FPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTV 226
+E A L V ++ F + + K+ + + ++ ++ V G
Sbjct: 155 NTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQ 214
Query: 227 LSSFDVDSNGKVVAVNLRDGNR------LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKV 280
+ V V LRD L + V IG PNT++FEGQL LE G IKV
Sbjct: 215 MG---------VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKV 265
Query: 281 TGRL-----QSSNSSVYAVGDV 297
+ Q+S V+A GDV
Sbjct: 266 QSGIHGNATQTSIPGVFAAGDV 287
>pdb|1TDF|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin
Reductase Refined At 2 Angstrom Resolution: Implications
For A Large Conformational Change During Catalysis
Length = 316
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 238 VVAVNLRDGNR------LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRL-----QS 286
V V LRD L + V IG PNT++FEGQL LE G IKV + Q+
Sbjct: 217 VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQT 276
Query: 287 SNSSVYAVGDV 297
S V+A GDV
Sbjct: 277 SIPGVFAAGDV 287
>pdb|1TRB|A Chain A, Convergent Evolution Of Similar Function In Two
Structurally Divergent Enzymes
Length = 320
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 238 VVAVNLRDGNR------LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRL-----QS 286
V V LRD L + V IG PNT++FEGQL LE G IKV + Q+
Sbjct: 217 VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQT 276
Query: 287 SNSSVYAVGDV 297
S V+A GDV
Sbjct: 277 SIPGVFAAGDV 287
>pdb|2EQ6|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2EQ6|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2EQ8|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|D Chain D, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|E Chain E, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ9|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|D Chain D, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|E Chain E, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|G Chain G, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|H Chain H, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|J Chain J, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|K Chain K, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
Length = 464
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 93/211 (44%), Gaps = 31/211 (14%)
Query: 105 VTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGN 164
V GE K LI+ATG+ L+L+ F + D+ D+ R + V +
Sbjct: 123 VEVGGERYGAKSLILATGSEPLELKGF----------PFGEDVWDSTRALKVEEGLPK-R 171
Query: 165 AVVIGGGYIGMECAASLVINKINVTMV--FPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
+VIGGG +G+E VT++ PE P+ A+ + +G++
Sbjct: 172 LLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQG---DPETAALLRRALEKEGIRVR 228
Query: 223 KGTVLSSFDVDSNG---KVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIK 279
T ++ +G ++ +G + D V+V +G +P T EG L LEK G+K
Sbjct: 229 TKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRT---EG-LGLEKAGVK 284
Query: 280 V--------TGRLQSSNSSVYAVGDVAAFPL 302
V R+++S VYA+GD A PL
Sbjct: 285 VDERGFIRVNARMETSVPGVYAIGDAARPPL 315
>pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|B Chain B, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|C Chain C, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|D Chain D, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
Length = 470
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 65/145 (44%), Gaps = 10/145 (6%)
Query: 166 VVIGGGYIGMECAASLVINKINVTMVFPE-AHCMARLFTPKIASYYEEYYKSKGVKFVKG 224
VVIG GYIG+E + V +I + E A + +I ++ + +G+KF
Sbjct: 181 VVIGAGYIGLEMGS--VWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLK 238
Query: 225 TVLSSFDVDSNGKVVAVNLRDGNR---LPTDMVVVGIGIRPNTSLFE----GQLTLEKGG 277
T + D +G + V G + D+V+V G P TS G T + G
Sbjct: 239 TKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGR 298
Query: 278 IKVTGRLQSSNSSVYAVGDVAAFPL 302
I V R ++ S VYA+GDV P+
Sbjct: 299 ILVNERFSTNVSGVYAIGDVIPGPM 323
>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
pdb|1BZL|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
Length = 486
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 68/138 (49%), Gaps = 8/138 (5%)
Query: 166 VVIGGGYIGMECAASLVINKI---NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
+ +GGG+I +E A K VT+ + + R F + + + G++ +
Sbjct: 192 LTVGGGFISVEFAGIFNAYKPKDGQVTLCY-RGEMILRGFDHTLREELTKQLTANGIQIL 250
Query: 223 KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ---LTLEKGGIK 279
+ +++++G +V G ++ D+V++ IG P T + Q + ++ GG++
Sbjct: 251 TKENPAKVELNADGSK-SVTFESGKKMDFDLVMMAIGRSPRTKDLQLQNAGVMIKNGGVQ 309
Query: 280 VTGRLQSSNSSVYAVGDV 297
V +++ S++YA+GDV
Sbjct: 310 VDEYSRTNVSNIYAIGDV 327
>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|B Chain B, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|C Chain C, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|D Chain D, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
Length = 491
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 68/138 (49%), Gaps = 8/138 (5%)
Query: 166 VVIGGGYIGMECAASLVINKI---NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
+ +GGG+I +E A K VT+ + + R F + + + G++ +
Sbjct: 192 LTVGGGFISVEFAGIFNAYKPKDGQVTLCY-RGEMILRGFDHTLREELTKQLTANGIQIL 250
Query: 223 KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ---LTLEKGGIK 279
+ +++++G +V G ++ D+V++ IG P T + Q + ++ GG++
Sbjct: 251 TKENPAKVELNADGSK-SVTFESGKKMDFDLVMMAIGRSPRTKDLQLQNAGVMIKNGGVQ 309
Query: 280 VTGRLQSSNSSVYAVGDV 297
V +++ S++YA+GDV
Sbjct: 310 VDEYSRTNVSNIYAIGDV 327
>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
pdb|1AOG|B Chain B, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
Length = 485
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 68/138 (49%), Gaps = 8/138 (5%)
Query: 166 VVIGGGYIGMECAASLVINKI---NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
+ +GGG+I +E A K VT+ + + R F + + + G++ +
Sbjct: 191 LTVGGGFISVEFAGIFNAYKPKDGQVTLCY-RGEMILRGFDHTLREELTKQLTANGIQIL 249
Query: 223 KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ---LTLEKGGIK 279
+ +++++G +V G ++ D+V++ IG P T + Q + ++ GG++
Sbjct: 250 TKENPAKVELNADGSK-SVTFESGKKMDFDLVMMAIGRSPRTKDLQLQNAGVMIKNGGVQ 308
Query: 280 VTGRLQSSNSSVYAVGDV 297
V +++ S++YA+GDV
Sbjct: 309 VDEYSRTNVSNIYAIGDV 326
>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
pdb|1GXF|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
Length = 492
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 68/138 (49%), Gaps = 8/138 (5%)
Query: 166 VVIGGGYIGMECAASLVINKI---NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
+ +GGG+I +E A K VT+ + + R F + + + G++ +
Sbjct: 193 LTVGGGFISVEFAGIFNAYKPKDGQVTLCY-RGEMILRGFDHTLREELTKQLTANGIQIL 251
Query: 223 KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ---LTLEKGGIK 279
+ +++++G +V G ++ D+V++ IG P T + Q + ++ GG++
Sbjct: 252 TKENPAKVELNADGSK-SVTFESGKKMDFDLVMMAIGRSPRTKDLQLQNAGVMIKNGGVQ 310
Query: 280 VTGRLQSSNSSVYAVGDV 297
V +++ S++YA+GDV
Sbjct: 311 VDEYSRTNVSNIYAIGDV 328
>pdb|2QAE|A Chain A, Crystal Structure Analysis Of Trypanosoma Cruzi Lipoamide
Dehydrogenase
pdb|2QAE|B Chain B, Crystal Structure Analysis Of Trypanosoma Cruzi Lipoamide
Dehydrogenase
Length = 468
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 14/142 (9%)
Query: 166 VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 225
VVIGGG IG+E + VT+V C L + K++ +KF+ T
Sbjct: 178 VVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPTLDEDVTNALVGALAKNEKMKFMTST 237
Query: 226 VLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGIRPNTSLFEGQLTL--------EK 275
+ + + + V ++G R + + ++V +G RP F G L L E+
Sbjct: 238 KVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRP----FTGGLGLDKINVAKNER 293
Query: 276 GGIKVTGRLQSSNSSVYAVGDV 297
G +K+ ++S VYA+GDV
Sbjct: 294 GFVKIGDHFETSIPDVYAIGDV 315
>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide
Reductase Ahpf From E.Coli
Length = 310
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 86/215 (40%), Gaps = 39/215 (18%)
Query: 106 TATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSG--- 162
TA+G + + +I+ATGA+ + G + V Y C G
Sbjct: 96 TASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYC-------------PHCDGPLF 142
Query: 163 --GNAVVIGGGYIGMECAASL--VINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKG 218
VIGGG G+E A L ++ + + PE ++ K+ S K
Sbjct: 143 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA-DQVLQDKLRSL-------KN 194
Query: 219 VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDM-------VVVGIGIRPNTSLFEGQL 271
V + + D + KVV + RD R+ D+ + V IG+ PNT+ EG +
Sbjct: 195 VDIILNAQTTEVKGDGS-KVVGLEYRD--RVSGDIHNIELAGIFVQIGLLPNTNWLEGAV 251
Query: 272 TLEK-GGIKVTGRLQSSNSSVYAVGDVAAFPLKLL 305
+ G I + + +++ V+A GD P K +
Sbjct: 252 ERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYKQI 286
>pdb|1XDI|A Chain A, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
pdb|1XDI|B Chain B, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
Length = 499
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 109/261 (41%), Gaps = 42/261 (16%)
Query: 57 EAPARLPSFH----TCVGANEERLTPKWYNEHGIELVLGTRVKSAD-----VRRKTLVTA 107
+A LP H T A +T + + G++++ G R + D R + TA
Sbjct: 78 DAKISLPQIHARVKTLAAAQSADITAQLLS-MGVQVIAG-RGELIDSTPGLARHRIKATA 135
Query: 108 T-GETISYK--ILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGN 164
G T ++ ++++ATGA L + D E + R L D + L + +
Sbjct: 136 ADGSTSEHEADVVLVATGASPRILPS---AQPDGERILTWRQLYDLDALPD--------H 184
Query: 165 AVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKG 224
+V+G G G E + + VT+V + H + A EE + +GV+ K
Sbjct: 185 LIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLP-YEDADAALVLEESFAERGVRLFKN 243
Query: 225 TVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGR- 283
+S V G V V + DG + ++ IG PNTS L LE+ GI++ GR
Sbjct: 244 ARAAS--VTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNTS----GLGLERVGIQL-GRG 296
Query: 284 --------LQSSNSSVYAVGD 296
++ + +YA GD
Sbjct: 297 NYLTVDRVSRTLATGIYAAGD 317
>pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAO|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
Length = 499
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 70/154 (45%), Gaps = 14/154 (9%)
Query: 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
G +V+G Y+ +ECA L ++VT++ + R F +A+ E+ + G+KF+
Sbjct: 191 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSI--LLRGFDQDMANKIGEHMEEHGIKFI 248
Query: 223 KGTVLSSFDVDSNG-----KVVAVNLRDGNRLPTDMVVVGIGI-RPNTSLFEG------Q 270
+ V + + G KV A + + + V + + R + + G +
Sbjct: 249 RQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVGRDSCTRTIGLETVGVK 308
Query: 271 LTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 304
+ + G I VT Q++ +YA+GD+ L+L
Sbjct: 309 INEKTGKIPVTDEEQTNVPYIYAIGDILEGKLEL 342
>pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase
pdb|1H6V|B Chain B, Mammalian Thioredoxin Reductase
pdb|1H6V|C Chain C, Mammalian Thioredoxin Reductase
pdb|1H6V|D Chain D, Mammalian Thioredoxin Reductase
pdb|1H6V|E Chain E, Mammalian Thioredoxin Reductase
pdb|1H6V|F Chain F, Mammalian Thioredoxin Reductase
Length = 499
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 70/154 (45%), Gaps = 14/154 (9%)
Query: 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
G +V+G Y+ +ECA L ++VT++ + R F +A+ E+ + G+KF+
Sbjct: 191 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSI--LLRGFDQDMANKIGEHMEEHGIKFI 248
Query: 223 KGTVLSSFDVDSNG-----KVVAVNLRDGNRLPTDMVVVGIGI-RPNTSLFEG------Q 270
+ V + + G KV A + + + V + + R + + G +
Sbjct: 249 RQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVGRDSCTRTIGLETVGVK 308
Query: 271 LTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 304
+ + G I VT Q++ +YA+GD+ L+L
Sbjct: 309 INEKTGKIPVTDEEQTNVPYIYAIGDILEGKLEL 342
>pdb|1GSN|A Chain A, Human Glutathione Reductase Modified By
Dinitrosoglutathione
Length = 478
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 23/169 (13%)
Query: 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
G +V++G GYI +E A L +++ + R F I++ E ++ GV+ +
Sbjct: 188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNXTEELENAGVEVL 246
Query: 223 KGTVLSSFDVDSNGKVVAVNLRDGNRLP-------TDMVVVGIGIRPNTSLFEGQLTLEK 275
K + + +G V++ RLP D ++ IG PNT L+L K
Sbjct: 247 KFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDXLLWAIGRVPNTK----DLSLNK 302
Query: 276 GGIK-------VTGRLQSSN-SSVYAVGDVAAFPLKL---LGETRRLEH 313
GI+ + Q++N +YAVGDV L + R+L H
Sbjct: 303 LGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAH 351
>pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT
Length = 478
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 23/169 (13%)
Query: 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
G +V++G GYI +E A L +++ + R F I++ E ++ GV+ +
Sbjct: 188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVL 246
Query: 223 KGTVLSSFDVDSNGKVVAVNLRDGNRLP-------TDMVVVGIGIRPNTSLFEGQLTLEK 275
K + + +G V++ RLP D ++ IG PNT L+L K
Sbjct: 247 KFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTK----DLSLNK 302
Query: 276 GGIK-------VTGRLQSSN-SSVYAVGDVAAFPLKL---LGETRRLEH 313
GI+ + Q++N +YAVGDV L + R+L H
Sbjct: 303 LGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAH 351
>pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Glutathione Complex
pdb|3GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Trypanothione Complex
pdb|4GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Mixed
Disulfide Between Trypanothione And The Enzyme
pdb|5GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant,
Glutathionylspermidine Complex
Length = 461
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 23/169 (13%)
Query: 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
G +V++G GYI +E A L +++ + R F I++ E ++ GV+ +
Sbjct: 171 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVL 229
Query: 223 KGTVLSSFDVDSNGKVVAVNLRDGNRLP-------TDMVVVGIGIRPNTSLFEGQLTLEK 275
K + + +G V++ RLP D ++ IG PNT L+L K
Sbjct: 230 KFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTK----DLSLNK 285
Query: 276 GGIK-------VTGRLQSSN-SSVYAVGDVAAFPLKL---LGETRRLEH 313
GI+ + Q++N +YAVGDV L + R+L H
Sbjct: 286 LGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAH 334
>pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
Length = 478
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 23/169 (13%)
Query: 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
G +V++G GYI +E A L +++ + R F I++ E ++ GV+ +
Sbjct: 188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVL 246
Query: 223 KGTVLSSFDVDSNGKVVAVNLRDGNRLP-------TDMVVVGIGIRPNTSLFEGQLTLEK 275
K + + +G V++ RLP D ++ IG PNT L+L K
Sbjct: 247 KFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTK----DLSLNK 302
Query: 276 GGIK-------VTGRLQSSN-SSVYAVGDVAAFPLKL---LGETRRLEH 313
GI+ + Q++N +YAVGDV L + R+L H
Sbjct: 303 LGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAH 351
>pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By
Diglutathione-Dinitroso-Iron
Length = 478
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 23/169 (13%)
Query: 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
G +V++G GYI +E A L +++ + R F I++ E ++ GV+ +
Sbjct: 188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVL 246
Query: 223 KGTVLSSFDVDSNGKVVAVNLRDGNRLP-------TDMVVVGIGIRPNTSLFEGQLTLEK 275
K + + +G V++ RLP D ++ IG PNT L+L K
Sbjct: 247 KFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTK----DLSLNK 302
Query: 276 GGIK-------VTGRLQSSN-SSVYAVGDVAAFPLKL---LGETRRLEH 313
GI+ + Q++N +YAVGDV L + R+L H
Sbjct: 303 LGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAH 351
>pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
Length = 477
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 23/169 (13%)
Query: 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
G +V++G GYI +E A L +++ + R F I++ E ++ GV+ +
Sbjct: 187 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVL 245
Query: 223 KGTVLSSFDVDSNGKVVAVNLRDGNRLP-------TDMVVVGIGIRPNTSLFEGQLTLEK 275
K + + +G V++ RLP D ++ IG PNT L+L K
Sbjct: 246 KFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTK----DLSLNK 301
Query: 276 GGIK-------VTGRLQSSN-SSVYAVGDVAAFPLKL---LGETRRLEH 313
GI+ + Q++N +YAVGDV L + R+L H
Sbjct: 302 LGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAH 350
>pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Ajoene Inhibitor And Subversive Substrate
pdb|2GH5|A Chain A, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|2GH5|B Chain B, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|1GRA|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRB|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRE|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRF|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|3GRS|A Chain A, Refined Structure Of Glutathione Reductase At 1.54
Angstroms Resolution
pdb|4GR1|A Chain A, The Binding Of The Retro-analogue Of Glutathione Disulfide
To Glutathione Reductase
pdb|3DJJ|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK4|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK8|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK9|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|1GRH|A Chain A, Inhibition Of Human Glutathione Reductase By The
Nitrosourea Drugs 1, 3-Bis(2-Chloroethyl)-1-Nitrosourea
And 1-(2-Chloroethyl)-3-(2- Hydroxyethyl)-1-Nitrosourea
pdb|3SQP|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
pdb|3SQP|B Chain B, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
Length = 478
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 23/169 (13%)
Query: 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
G +V++G GYI +E A L +++ + R F I++ E ++ GV+ +
Sbjct: 188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVL 246
Query: 223 KGTVLSSFDVDSNGKVVAVNLRDGNRLP-------TDMVVVGIGIRPNTSLFEGQLTLEK 275
K + + +G V++ RLP D ++ IG PNT L+L K
Sbjct: 247 KFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTK----DLSLNK 302
Query: 276 GGIK-------VTGRLQSSN-SSVYAVGDVAAFPLKL---LGETRRLEH 313
GI+ + Q++N +YAVGDV L + R+L H
Sbjct: 303 LGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAH 351
>pdb|1K4Q|A Chain A, Human Glutathione Reductase Inactivated By Peroxynitrite
Length = 463
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 23/169 (13%)
Query: 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
G +V++G GYI +E A L +++ + R F I++ E ++ GV+ +
Sbjct: 173 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVL 231
Query: 223 KGTVLSSFDVDSNGKVVAVNLRDGNRLP-------TDMVVVGIGIRPNTSLFEGQLTLEK 275
K + + +G V++ RLP D ++ IG PNT L+L K
Sbjct: 232 KFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTK----DLSLNK 287
Query: 276 GGIK-------VTGRLQSSN-SSVYAVGDVAAFPLKL---LGETRRLEH 313
GI+ + Q++N +YAVGDV L + R+L H
Sbjct: 288 LGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAH 336
>pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene
Inhibitor
Length = 461
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 23/169 (13%)
Query: 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
G +V++G GYI +E A L +++ + R F I++ E ++ GV+ +
Sbjct: 171 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVL 229
Query: 223 KGTVLSSFDVDSNGKVVAVNLRDGNRLP-------TDMVVVGIGIRPNTSLFEGQLTLEK 275
K + + +G V++ RLP D ++ IG PNT L+L K
Sbjct: 230 KFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTK----DLSLNK 285
Query: 276 GGIK-------VTGRLQSSN-SSVYAVGDVAAFPLKL---LGETRRLEH 313
GI+ + Q++N +YAVGDV L + R+L H
Sbjct: 286 LGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAH 334
>pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione
Reductase, Complexed With Gopi
Length = 479
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 23/169 (13%)
Query: 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
G +V++G GYI +E A L +++ + R F I++ E ++ GV+ +
Sbjct: 189 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVL 247
Query: 223 KGTVLSSFDVDSNGKVVAVNLRDGNRLP-------TDMVVVGIGIRPNTSLFEGQLTLEK 275
K + + +G V++ RLP D ++ IG PNT L+L K
Sbjct: 248 KFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTK----DLSLNK 303
Query: 276 GGIK-------VTGRLQSSN-SSVYAVGDVAAFPLKL---LGETRRLEH 313
GI+ + Q++N +YAVGDV L + R+L H
Sbjct: 304 LGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAH 352
>pdb|3CTY|A Chain A, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
pdb|3CTY|B Chain B, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
Length = 319
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 19/147 (12%)
Query: 162 GGNAVVIGGGYIGMECAASLVINKINVTMV--FPEAHCMARLFTPKIASYYEEYYKSKGV 219
G V IGGG G A S+ NVT++ P+ C + Y + K + +
Sbjct: 155 GKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMC---------ENAYVQEIKKRNI 205
Query: 220 KFVKGTVLSSFDVDSNGKVVAVNLRDGNR-----LPTDMVVVGIGIRPNTSLFE--GQLT 272
++ ++ V KV V +D + TD V + +G+ P TS + G
Sbjct: 206 PYIMNAQVTEI-VGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVKL 264
Query: 273 LEKGGIKVTGRLQSSNSSVYAVGDVAA 299
E+G I V R ++S VYA GDV +
Sbjct: 265 DERGYIVVDSRQRTSVPGVYAAGDVTS 291
>pdb|2CFY|A Chain A, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|B Chain B, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|C Chain C, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|D Chain D, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|E Chain E, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|F Chain F, Crystal Structure Of Human Thioredoxin Reductase 1
Length = 521
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 75/158 (47%), Gaps = 22/158 (13%)
Query: 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
G +V+G Y+ +ECA L ++VT++ + R F +A+ E+ + G+KF+
Sbjct: 213 GKTLVVGASYVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFI 270
Query: 223 KGTV---LSSFDVDSNGKVVAV----NLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEK 275
+ V + + + G++ V N + + V++ IG T ++ LE
Sbjct: 271 RQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTR----KIGLET 326
Query: 276 GGIKV---TGRL------QSSNSSVYAVGDVAAFPLKL 304
G+K+ TG++ Q++ +YA+GD+ ++L
Sbjct: 327 VGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVEL 364
>pdb|3QFA|A Chain A, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|B Chain B, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|A Chain A, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|B Chain B, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 519
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 75/158 (47%), Gaps = 22/158 (13%)
Query: 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
G +V+G Y+ +ECA L ++VT++ + R F +A+ E+ + G+KF+
Sbjct: 211 GKTLVVGASYVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFI 268
Query: 223 KGTV---LSSFDVDSNGKVVAV----NLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEK 275
+ V + + + G++ V N + + V++ IG T ++ LE
Sbjct: 269 RQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTR----KIGLET 324
Query: 276 GGIKV---TGRL------QSSNSSVYAVGDVAAFPLKL 304
G+K+ TG++ Q++ +YA+GD+ ++L
Sbjct: 325 VGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVEL 362
>pdb|2ZZ0|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|B Chain B, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|C Chain C, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|D Chain D, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZB|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|B Chain B, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|C Chain C, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|D Chain D, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZC|A Chain A, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|B Chain B, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|C Chain C, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|D Chain D, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
Length = 513
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 75/158 (47%), Gaps = 22/158 (13%)
Query: 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
G +V+G Y+ +ECA L ++VT++ + R F +A+ E+ + G+KF+
Sbjct: 205 GKTLVVGASYVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFI 262
Query: 223 KGTV---LSSFDVDSNGKVVAV----NLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEK 275
+ V + + + G++ V N + + V++ IG T ++ LE
Sbjct: 263 RQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTR----KIGLET 318
Query: 276 GGIKV---TGRL------QSSNSSVYAVGDVAAFPLKL 304
G+K+ TG++ Q++ +YA+GD+ ++L
Sbjct: 319 VGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVEL 356
>pdb|2J3N|A Chain A, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|B Chain B, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|C Chain C, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|D Chain D, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|E Chain E, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|F Chain F, X-Ray Structure Of Human Thioredoxin Reductase 1
Length = 519
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 75/158 (47%), Gaps = 22/158 (13%)
Query: 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
G +V+G Y+ +ECA L ++VT++ + R F +A+ E+ + G+KF+
Sbjct: 211 GKTLVVGASYVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFI 268
Query: 223 KGTV---LSSFDVDSNGKVVAV----NLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEK 275
+ V + + + G++ V N + + V++ IG T ++ LE
Sbjct: 269 RQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTR----KIGLET 324
Query: 276 GGIKV---TGRL------QSSNSSVYAVGDVAAFPLKL 304
G+K+ TG++ Q++ +YA+GD+ ++L
Sbjct: 325 VGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVEL 362
>pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|B Chain B, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|C Chain C, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|D Chain D, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOV|A Chain A, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|B Chain B, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|C Chain C, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|D Chain D, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOW|A Chain A, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|B Chain B, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|C Chain C, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|D Chain D, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WP5|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP6|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WPC|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPE|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPF|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
Length = 495
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 9/139 (6%)
Query: 166 VVIGGGYIGMECAASLVINKI---NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
+ +GGG+I +E A K VT+ + + + R F I + + G++ +
Sbjct: 195 LTVGGGFISVEFAGIFNAYKPPGGKVTLCY-RNNLILRGFDETIREEVTKQLTANGIEIM 253
Query: 223 KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE----GQLTLEKGGI 278
+ ++++G V G L D+V++ IG P T+ + G KGG+
Sbjct: 254 TNENPAKVSLNTDGSK-HVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGV 312
Query: 279 KVTGRLQSSNSSVYAVGDV 297
+V +++ ++YA+GD+
Sbjct: 313 QVDEFSRTNVPNIYAIGDI 331
>pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei
pdb|2WBA|B Chain B, Properties Of Trypanothione Reductase From T. Brucei
Length = 492
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 9/139 (6%)
Query: 166 VVIGGGYIGMECAASLVINKI---NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
+ +GGG+I +E A K VT+ + + + R F I + + G++ +
Sbjct: 192 LTVGGGFISVEFAGIFNAYKPPGGKVTLCY-RNNLILRGFDETIREEVTKQLTANGIEIM 250
Query: 223 KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE----GQLTLEKGGI 278
+ ++++G V G L D+V++ IG P T+ + G KGG+
Sbjct: 251 TNENPAKVSLNTDGSK-HVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGV 309
Query: 279 KVTGRLQSSNSSVYAVGDV 297
+V +++ ++YA+GD+
Sbjct: 310 QVDEFSRTNVPNIYAIGDI 328
>pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
pdb|4B1B|B Chain B, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
Length = 542
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 84/197 (42%), Gaps = 26/197 (13%)
Query: 110 ETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIG 169
ET++ K ++IATG R ++V ++L+ + + +K G +V+G
Sbjct: 182 ETVTGKYILIATGCRP----------HIPDDVEGAKELSITSDDIFSLKK-DPGKTLVVG 230
Query: 170 GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTV--- 226
Y+ +EC+ L N + + + R F + A + Y + +GV F G +
Sbjct: 231 ASYVALECSGFL--NSLGYDVTVAVRSIVLRGFDQQCAVKVKLYMEEQGVMFKNGILPKK 288
Query: 227 LSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT---SLFEGQLTLEKGGIKVTG- 282
L+ D + V D D V+ IG + + +L + + K K+
Sbjct: 289 LTKMD-----DKILVEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIAD 343
Query: 283 RLQSSN-SSVYAVGDVA 298
L +N S++AVGDVA
Sbjct: 344 HLSCTNIPSIFAVGDVA 360
>pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
pdb|2X50|B Chain B, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
Length = 510
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 84/201 (41%), Gaps = 34/201 (16%)
Query: 110 ETISYKILIIATGARALKL----EEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNA 165
ET+ + ++IATG+ +L +EF ++ ++A YL D
Sbjct: 169 ETLDTEYILIATGSWPTRLGVPGDEFCITSNEA---FYLEDAPK--------------RM 211
Query: 166 VVIGGGYIGMECAASLVINKIN-----VTMVFPEAHCMARLFTPKIASYYEEYYKSKGVK 220
+ +GGGYI +E A + N V + + + R F ++ + + G++
Sbjct: 212 LCVGGGYIAVEFAG--IFNGYKPCGGYVDLCY-RGDLILRGFDTEVRKSLTKQLGANGIR 268
Query: 221 FVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE----GQLTLEKG 276
+ + +G V+ DG D V++ IG P + + G T + G
Sbjct: 269 VRTNLNPTKITKNEDGSN-HVHFNDGTEEDYDQVMLAIGRVPRSQALQLDKAGVRTGKNG 327
Query: 277 GIKVTGRLQSSNSSVYAVGDV 297
++V ++S ++YA+GDV
Sbjct: 328 AVQVDAYSKTSVDNIYAIGDV 348
>pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2JK6|B Chain B, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2W0H|A Chain A, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2W0H|B Chain B, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2YAU|A Chain A, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|2YAU|B Chain B, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|4ADW|A Chain A, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
pdb|4ADW|B Chain B, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
Length = 511
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 84/201 (41%), Gaps = 34/201 (16%)
Query: 110 ETISYKILIIATGARALKL----EEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNA 165
ET+ + ++IATG+ +L +EF ++ ++A YL D
Sbjct: 169 ETLDTEYILIATGSWPTRLGVPGDEFCITSNEA---FYLEDAPK--------------RM 211
Query: 166 VVIGGGYIGMECAASLVINKIN-----VTMVFPEAHCMARLFTPKIASYYEEYYKSKGVK 220
+ +GGGYI +E A + N V + + + R F ++ + + G++
Sbjct: 212 LCVGGGYIAVEFAG--IFNGYKPCGGYVDLCY-RGDLILRGFDTEVRKSLTKQLGANGIR 268
Query: 221 FVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE----GQLTLEKG 276
+ + +G V+ DG D V++ IG P + + G T + G
Sbjct: 269 VRTNLNPTKITKNEDGSN-HVHFNDGTEEDYDQVMLAIGRVPRSQALQLDKAGVRTGKNG 327
Query: 277 GIKVTGRLQSSNSSVYAVGDV 297
++V ++S ++YA+GDV
Sbjct: 328 AVQVDAYSKTSVDNIYAIGDV 348
>pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|C Chain C, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|D Chain D, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEB|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEB|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEC|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
pdb|1FEC|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
Length = 490
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 84/199 (42%), Gaps = 22/199 (11%)
Query: 106 TATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNA 165
+A ET+ + +++ATG+ + G+ G D +C + +A L K A
Sbjct: 144 SAVLETLDTEYILLATGSWP---QHLGIEGDD---LCITSN--EAFYLDEAPK-----RA 190
Query: 166 VVIGGGYIGMECAASLVINKI---NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
+ +GGGYI +E A K V + + + R F ++ E ++ G+
Sbjct: 191 LCVGGGYISIEFAGIFNAYKARGGQVDLAY-RGDMILRGFDSELRKQLTEQLRANGINVR 249
Query: 223 KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE----GQLTLEKGGI 278
+ +++G V G D+V++ IG P + + G + G I
Sbjct: 250 THENPAKVTKNADGTRHVV-FESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAI 308
Query: 279 KVTGRLQSSNSSVYAVGDV 297
KV +++ ++YA+GDV
Sbjct: 309 KVDAYSKTNVDNIYAIGDV 327
>pdb|1TYP|A Chain A, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
pdb|1TYP|B Chain B, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
Length = 487
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 84/199 (42%), Gaps = 22/199 (11%)
Query: 106 TATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNA 165
+A ET+ + +++ATG+ + G+ G D +C + +A L K A
Sbjct: 145 SAVLETLDTEYILLATGSWP---QHLGIEGDD---LCITSN--EAFYLDEAPK-----RA 191
Query: 166 VVIGGGYIGMECAASLVINKI---NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
+ +GGGYI +E A K V + + + R F ++ E ++ G+
Sbjct: 192 LCVGGGYISIEFAGIFNAYKARGGQVDLAY-RGDMILRGFDSELRKQLTEQLRANGINVR 250
Query: 223 KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE----GQLTLEKGGI 278
+ +++G V G D+V++ IG P + + G + G I
Sbjct: 251 THENPAKVTKNADGTRHVV-FESGAEADYDVVMLAIGRVPRSQTLQLDKAGVEVAKNGAI 309
Query: 279 KVTGRLQSSNSSVYAVGDV 297
KV +++ ++YA+GDV
Sbjct: 310 KVDAYSKTNVDNIYAIGDV 328
>pdb|2TPR|A Chain A, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
pdb|2TPR|B Chain B, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
Length = 490
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 84/199 (42%), Gaps = 22/199 (11%)
Query: 106 TATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNA 165
+A ET+ + +++ATG+ + G+ G D +C + +A L K A
Sbjct: 144 SAVLETLDTEYILLATGSWP---QHLGIEGDD---LCITSN--EAFYLDEAPK-----RA 190
Query: 166 VVIGGGYIGMECAASLVINKI---NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
+ +GGGYI +E A K V + + + R F ++ E ++ G+
Sbjct: 191 LCVGGGYISIEFAGIFNAYKARGGQVDLAY-RGDMILRGFDSELRKQLTEQLRANGINVR 249
Query: 223 KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE----GQLTLEKGGI 278
+ +++G V G D+V++ IG P + + G + G I
Sbjct: 250 THENPAKVTKNADGTRHVV-FESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAI 308
Query: 279 KVTGRLQSSNSSVYAVGDV 297
KV +++ ++YA+GDV
Sbjct: 309 KVDAYSKTNVDNIYAIGDV 327
>pdb|1TYT|A Chain A, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
pdb|1TYT|B Chain B, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
Length = 487
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 84/199 (42%), Gaps = 22/199 (11%)
Query: 106 TATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNA 165
+A ET+ + +++ATG+ + G+ G D +C + +A L K A
Sbjct: 145 SAVLETLDTEYILLATGSWP---QHLGIEGDD---LCITSN--EAFYLDEAPK-----RA 191
Query: 166 VVIGGGYIGMECAASLVINKI---NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
+ +GGGYI +E A K V + + + R F ++ E ++ G+
Sbjct: 192 LCVGGGYISIEFAGIFNAYKARGGQVDLAY-RGDMILRGFDSELRKQLTEQLRANGINVR 250
Query: 223 KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE----GQLTLEKGGI 278
+ +++G V G D+V++ IG P + + G + G I
Sbjct: 251 THENPAKVTKNADGTRHVV-FESGAEADYDVVMLAIGRVPRSQTLQLDKAGVEVAKNGAI 309
Query: 279 KVTGRLQSSNSSVYAVGDV 297
KV +++ ++YA+GDV
Sbjct: 310 KVDAYSKTNVDNIYAIGDV 328
>pdb|2ZBW|A Chain A, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
pdb|2ZBW|B Chain B, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
Length = 335
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 85/214 (39%), Gaps = 31/214 (14%)
Query: 104 LVTATGETISYKILIIATGARALKLEEFGLSGS---DAENVCYLRDLADANRLVNVMKSC 160
+ T+ G + K +IIA G A + G G + V Y V
Sbjct: 100 VTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYA---------VKSKAEF 150
Query: 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK-IASYYEEYYKSKGV 219
G +++GGG ++ A +L+ +T++ A + K + +EE
Sbjct: 151 QGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRAHEASVKELXKAHEEG------ 204
Query: 220 KFVKGTVLSSFD---VDSNGKVV-AVNLRDGNR----LPTDMVVVGIG-IRPNTSLFEGQ 270
+ VL+ ++ V+ + +V AV + + L D V++ G I L
Sbjct: 205 ---RLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWG 261
Query: 271 LTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 304
L LEK IKV +S VYA GD+ +P KL
Sbjct: 262 LALEKNKIKVDTTXATSIPGVYACGDIVTYPGKL 295
>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
pdb|3LAD|B Chain B, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
Length = 476
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 14/140 (10%)
Query: 167 VIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTP----KIASYYEEYYKSKGVKFV 222
VIG G IG+E + V ++ + EA M + F P ++A ++ +G+K +
Sbjct: 185 VIGAGVIGLELGS--VWARLGAEVTVLEA--MDK-FLPAVDEQVAKEAQKILTKQGLKIL 239
Query: 223 KGTVLSSFDVDSNGKVVAVNLRDGNRLPT-DMVVVGIGIRPNTSLF---EGQLTL-EKGG 277
G ++ +V + V +G + D ++V +G RP T+ + +TL E+G
Sbjct: 240 LGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGF 299
Query: 278 IKVTGRLQSSNSSVYAVGDV 297
I V +S VYA+GDV
Sbjct: 300 IYVDDYCATSVPGVYAIGDV 319
>pdb|3ITJ|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
pdb|3ITJ|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
pdb|3ITJ|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
pdb|3ITJ|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
Length = 338
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 86/201 (42%), Gaps = 32/201 (15%)
Query: 110 ETISYKILIIATGARALKL-----EEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGN 164
E ++ +I+ATGA A ++ E + G A VC + V + ++
Sbjct: 127 EPVTTDAIILATGASAKRMHLPGEETYWQKGISACAVC--------DGAVPIFRNKP--- 175
Query: 165 AVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKG 224
VIGGG E A L V M+ + H A K A K++ ++ +
Sbjct: 176 LAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRASTIMQKRAE------KNEKIEILYN 229
Query: 225 TVLSSFDVDSNGKVV-AVNLRDGNR-----LPTDMVVVGIGIRPNTSLFEGQL-TLEKGG 277
TV + + +GK++ A+ +++ + LP + IG P T + GQ+ T E G
Sbjct: 230 TV--ALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAGQVDTDEAGY 287
Query: 278 IK-VTGRLQSSNSSVYAVGDV 297
IK V G +S +A GDV
Sbjct: 288 IKTVPGSSLTSVPGFFAAGDV 308
>pdb|3UC1|A Chain A, Mycobacterium Tuberculosis Gyrase Type Iia Topoisomerase
C-Terminal Domain
Length = 327
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 221 FVKGTVLSSFDVDSNGKVVAVNLRDGNRL 249
VK + L+ FD + +G +VAVNLRD + L
Sbjct: 120 LVKKSKLTDFDSNRSGGIVAVNLRDNDEL 148
>pdb|3D8X|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nadph
Dependent Thioredoxin Reductase 1
pdb|3D8X|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Nadph
Dependent Thioredoxin Reductase 1
Length = 326
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 86/201 (42%), Gaps = 32/201 (15%)
Query: 110 ETISYKILIIATGARALKL-----EEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGN 164
E ++ +I+ATGA A ++ E + G A VC + V + ++
Sbjct: 115 EPVTTDAIILATGASAKRMHLPGEETYWQKGISACAVC--------DGAVPIFRNKP--- 163
Query: 165 AVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKG 224
VIGGG E A L V M+ + H A K A K++ ++ +
Sbjct: 164 LAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRASTIMQKRAE------KNEKIEILYN 217
Query: 225 TVLSSFDVDSNGKVV-AVNLRDGNR-----LPTDMVVVGIGIRPNTSLFEGQL-TLEKGG 277
TV + + +GK++ A+ +++ + LP + IG P T + GQ+ T E G
Sbjct: 218 TV--ALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAGQVDTDEAGY 275
Query: 278 IK-VTGRLQSSNSSVYAVGDV 297
IK V G +S +A GDV
Sbjct: 276 IKTVPGSSLTSVPGFFAAGDV 296
>pdb|3HYW|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
Length = 430
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Query: 76 LTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSG 135
L PK+ IE + + +S D T+ T +G+ I Y L+IATG + + FG G
Sbjct: 65 LLPKF----NIEFI-NEKAESIDPDANTVTTQSGKKIEYDYLVIATGPKLV----FGAEG 115
Query: 136 S--DAENVCYLRDLADANRLVNVMKSCSGGNAVVIGG 170
++ ++C + + + + + G VVIG
Sbjct: 116 QEENSTSICTAEHALETQKKLQELYANPG--PVVIGA 150
>pdb|3HYV|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYX|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
Length = 430
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Query: 76 LTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSG 135
L PK+ IE + + +S D T+ T +G+ I Y L+IATG + + FG G
Sbjct: 65 LLPKF----NIEFI-NEKAESIDPDANTVTTQSGKKIEYDYLVIATGPKLV----FGAEG 115
Query: 136 S--DAENVCYLRDLADANRLVNVMKSCSGGNAVVIGG 170
++ ++C + + + + + G VVIG
Sbjct: 116 QEENSTSICTAEHALETQKKLQELYANPG--PVVIGA 150
>pdb|1ZK7|A Chain A, Crystal Structure Of Tn501 Mera
pdb|1ZX9|A Chain A, Crystal Structure Of Tn501 Mera
Length = 467
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 29/149 (19%)
Query: 167 VIGGGYIGMECAASL--VINKINV----TMVFPEAHCMARLFTPKIASYYEEYYKSKGVK 220
VIG + +E A + + +K+ V T+ F E P I ++++G++
Sbjct: 181 VIGSSVVALELAQAFARLGSKVTVLARNTLFFRE--------DPAIGEAVTAAFRAEGIE 232
Query: 221 FVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKV 280
++ T S +G+ V L D ++V G PNT L L+ G+ V
Sbjct: 233 VLEHTQASQV-AHMDGEFVLTTTH--GELRADKLLVATGRTPNTR----SLALDAAGVTV 285
Query: 281 TGR--------LQSSNSSVYAVGDVAAFP 301
+ +++SN ++YA GD P
Sbjct: 286 NAQGAIVIDQGMRTSNPNIYAAGDCTDQP 314
>pdb|1OJT|A Chain A, Structure Of Dihydrolipoamide Dehydrogenase
Length = 482
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 252 DMVVVGIGIRPNTSLFE----GQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPL 302
D V+V G PN L G ++G I+V +++++ +YA+GD+ P+
Sbjct: 276 DAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPM 330
>pdb|1BHY|A Chain A, Low Temperature Middle Resolution Structure Of P64k From
Masc Data
Length = 482
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 252 DMVVVGIGIRPNTSLFE----GQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPL 302
D V+V G PN L G ++G I+V +++++ +YA+GD+ P+
Sbjct: 276 DAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPM 330
>pdb|3L8K|A Chain A, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
pdb|3L8K|B Chain B, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
Length = 466
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 10/139 (7%)
Query: 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK 223
+ V+IG GYIG+E A+ + + ++ + L I + K +KF
Sbjct: 174 DMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILKL-NIKF-N 231
Query: 224 GTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGIRPNTSLFEGQ----LTLEKGG 277
V + + V + +DG++ + T+ VV+ G RP + EG L++ K G
Sbjct: 232 SPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRP--VIPEGAREIGLSISKTG 289
Query: 278 IKVTGRLQSSNSSVYAVGD 296
I V ++++ +V+A GD
Sbjct: 290 IVVDETMKTNIPNVFATGD 308
>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
pdb|1LPF|B Chain B, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
Length = 477
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 18/142 (12%)
Query: 167 VIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTP----KIASYYEEYYKSKGVKFV 222
VIG G IG+E + V ++ + EA F P +IA + +G+
Sbjct: 185 VIGAGVIGLELGS--VWARLGAEVTVLEA---LDKFLPAADEQIAKEALKVLTKQGLNIR 239
Query: 223 KGTVLSSFDVDSNGKVVAVNLRDGN---RLPTDMVVVGIGIRPNTSLF---EGQLTL-EK 275
G +++ +V K V V D N + D ++V +G RP T+ + +TL E+
Sbjct: 240 LGARVTASEVKK--KQVTVTFTDANGEQKETFDKLIVAVGRRPVTTDLLAADSGVTLDER 297
Query: 276 GGIKVTGRLQSSNSSVYAVGDV 297
G I V ++S V+A+GDV
Sbjct: 298 GFIYVDDHCKTSVPGVFAIGDV 319
>pdb|2K9K|A Chain A, Molecular Characterization Of The Tonb2 Protein From
Vibrio Anguillarum
Length = 106
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 211 EEYYKSKGVKF-VKGTVLSSFDVDSNGKVVAVNLRDGN 247
E Y S+ +K V+G V SF +D+ GK V +N+ D N
Sbjct: 26 EPVYPSRALKRGVEGFVTLSFTIDTTGKAVDINVVDAN 63
>pdb|3V3N|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3O|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
Length = 378
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 157 MKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLF 202
M S N +IGGG +G+ A L N I+V++ + AR+F
Sbjct: 1 MNLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIF 46
>pdb|2XDO|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2Y6Q|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|4A6N|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A99|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
Length = 398
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 157 MKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLF 202
M S N +IGGG +G+ A L N I+V++ + AR+F
Sbjct: 21 MNLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIF 66
>pdb|4A6N|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
Length = 398
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 157 MKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLF 202
M S N +IGGG +G+ A L N I+V++ + AR+F
Sbjct: 21 MNLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIF 66
>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
Length = 398
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 157 MKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLF 202
M S N +IGGG +G+ A L N I+V++ + AR+F
Sbjct: 21 MNLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIF 66
>pdb|2QQP|A Chain A, Crystal Structure Of Authentic Providence Virus
pdb|2QQP|C Chain C, Crystal Structure Of Authentic Providence Virus
pdb|2QQP|E Chain E, Crystal Structure Of Authentic Providence Virus
pdb|2QQP|G Chain G, Crystal Structure Of Authentic Providence Virus
Length = 556
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 365 YGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQ 406
Y + GTT N G VG F G +EE E + A RLQ
Sbjct: 509 YDGWEGTT------NAGSTVGQFAHTGAEEEDEVVQLANRLQ 544
>pdb|3IC9|A Chain A, The Structure Of Dihydrolipoamide Dehydrogenase From
Colwellia Psychrerythraea 34h.
pdb|3IC9|B Chain B, The Structure Of Dihydrolipoamide Dehydrogenase From
Colwellia Psychrerythraea 34h.
pdb|3IC9|C Chain C, The Structure Of Dihydrolipoamide Dehydrogenase From
Colwellia Psychrerythraea 34h.
pdb|3IC9|D Chain D, The Structure Of Dihydrolipoamide Dehydrogenase From
Colwellia Psychrerythraea 34h
Length = 492
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 101/241 (41%), Gaps = 49/241 (20%)
Query: 79 KWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDA 138
K+ +EH +++ ++V + K +V ATG +Y + A G+R L
Sbjct: 120 KFLDEHTLQVDDHSQVIA-----KRIVIATGSRPNYPEFLAAAGSRLLT----------N 164
Query: 139 ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTM-VFPEAHC 197
+N+ L DL KS + V G G IG+E +L +++ V + VF +
Sbjct: 165 DNLFELNDLP---------KSVA-----VFGPGVIGLELGQAL--SRLGVIVKVFGRSGS 208
Query: 198 MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDM--VV 255
+A L + Y E+ + + K V+S+ + + +V+ + + G + V+
Sbjct: 209 VANLQDEEXKRYAEKTFNEEFYFDAKARVISTIEKEDAVEVIYFD-KSGQKTTESFQYVL 267
Query: 256 VGIGIRPNTSLFEGQLTLEKGGIKVTGR---------LQSSNSSVYAVGDVAAFPLKLLG 306
G + N +L LE I++ + LQ+S ++ GD A L LL
Sbjct: 268 AATGRKANVD----KLGLENTSIELDKKNSPLFDELTLQTSVDHIFVAGD-ANNTLTLLH 322
Query: 307 E 307
E
Sbjct: 323 E 323
>pdb|3LKV|A Chain A, Crystal Structure Of Conserved Domain Protein From Vibrio
Cholerae O1 Biovar Eltor Str. N16961
Length = 302
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 83 EHGIELVLGTRVKSADVRRKTLVTATGETISYKIL 117
+HGI+LV T +KSADV+ T A + Y ++
Sbjct: 167 KHGIKLVEATALKSADVQSATQAIAEKSDVIYALI 201
>pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3URH|B Chain B, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 491
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Query: 205 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA---VNLRDGNRLPTDMVVVGIGIR 261
++A + +G+ F G ++ +G V V + L ++V++ G +
Sbjct: 240 EVAKQLQRXLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRK 299
Query: 262 PNTS---LFEGQLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFP 301
P+T L + + L+ +G +++ Q+S + VYA+GDV P
Sbjct: 300 PSTDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGP 343
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,895,184
Number of Sequences: 62578
Number of extensions: 607086
Number of successful extensions: 1997
Number of sequences better than 100.0: 142
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 1754
Number of HSP's gapped (non-prelim): 177
length of query: 479
length of database: 14,973,337
effective HSP length: 103
effective length of query: 376
effective length of database: 8,527,803
effective search space: 3206453928
effective search space used: 3206453928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)