Query 011700
Match_columns 479
No_of_seqs 483 out of 3405
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 04:16:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011700.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011700hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09754 phenylpropionate diox 100.0 5.9E-54 1.3E-58 433.8 49.7 388 3-416 2-391 (396)
2 COG1249 Lpd Pyruvate/2-oxoglut 100.0 2.2E-55 4.8E-60 440.6 31.6 394 1-428 1-452 (454)
3 KOG1336 Monodehydroascorbate/f 100.0 1.4E-53 3.1E-58 412.2 34.5 398 5-423 75-473 (478)
4 PRK13512 coenzyme A disulfide 100.0 3.8E-52 8.3E-57 425.2 43.0 396 5-428 2-425 (438)
5 KOG4716 Thioredoxin reductase 100.0 1.3E-54 2.8E-59 398.1 18.6 416 3-445 18-503 (503)
6 PRK09564 coenzyme A disulfide 100.0 3.8E-51 8.3E-56 420.3 43.0 403 6-429 2-432 (444)
7 PRK06370 mercuric reductase; V 100.0 2.7E-51 5.8E-56 422.7 32.5 398 1-429 2-452 (463)
8 PRK06467 dihydrolipoamide dehy 100.0 5.2E-51 1.1E-55 420.0 31.2 397 1-428 1-453 (471)
9 TIGR01421 gluta_reduc_1 glutat 100.0 8.8E-51 1.9E-55 416.0 32.5 392 3-428 1-448 (450)
10 PRK06116 glutathione reductase 100.0 1.7E-50 3.7E-55 415.5 32.0 394 1-428 1-448 (450)
11 PRK14989 nitrite reductase sub 100.0 2.4E-48 5.2E-53 419.9 49.2 385 1-411 1-395 (847)
12 TIGR01424 gluta_reduc_2 glutat 100.0 5.1E-50 1.1E-54 410.8 34.3 392 4-428 2-444 (446)
13 PRK05249 soluble pyridine nucl 100.0 3.2E-50 6.9E-55 415.1 32.8 397 2-428 3-451 (461)
14 PLN02507 glutathione reductase 100.0 2.9E-49 6.2E-54 408.6 37.8 394 4-429 25-482 (499)
15 PRK14694 putative mercuric red 100.0 7.1E-50 1.5E-54 412.2 33.2 396 1-428 1-451 (468)
16 PTZ00058 glutathione reductase 100.0 2E-49 4.4E-54 411.0 34.9 402 4-429 48-556 (561)
17 PRK08010 pyridine nucleotide-d 100.0 2.1E-49 4.6E-54 406.4 33.6 392 3-428 2-435 (441)
18 PRK06416 dihydrolipoamide dehy 100.0 1.3E-49 2.9E-54 410.4 31.6 396 3-428 3-450 (462)
19 TIGR01423 trypano_reduc trypan 100.0 2.2E-49 4.8E-54 406.9 31.9 396 2-430 1-471 (486)
20 TIGR01438 TGR thioredoxin and 100.0 6.3E-49 1.4E-53 404.5 33.7 410 4-446 2-484 (484)
21 PRK05976 dihydrolipoamide dehy 100.0 5.1E-49 1.1E-53 406.5 33.0 401 1-429 1-461 (472)
22 TIGR02374 nitri_red_nirB nitri 100.0 1.6E-47 3.6E-52 414.2 46.2 383 7-416 1-389 (785)
23 TIGR02053 MerA mercuric reduct 100.0 6.6E-49 1.4E-53 405.2 33.6 393 5-429 1-447 (463)
24 PRK07845 flavoprotein disulfid 100.0 7.5E-49 1.6E-53 403.8 32.7 393 5-427 2-453 (466)
25 PTZ00052 thioredoxin reductase 100.0 8.5E-49 1.8E-53 405.4 32.9 414 1-448 2-497 (499)
26 PRK06115 dihydrolipoamide dehy 100.0 1E-48 2.2E-53 402.8 32.9 398 3-429 2-455 (466)
27 PRK07818 dihydrolipoamide dehy 100.0 1.2E-48 2.5E-53 403.2 33.1 395 1-429 1-455 (466)
28 PLN02546 glutathione reductase 100.0 1.4E-48 3.1E-53 405.0 33.8 392 4-429 79-531 (558)
29 PRK07251 pyridine nucleotide-d 100.0 7.7E-49 1.7E-53 401.8 30.8 392 3-428 2-434 (438)
30 PRK07846 mycothione reductase; 100.0 3.8E-48 8.3E-53 396.3 34.3 389 4-427 1-443 (451)
31 PRK04965 NADH:flavorubredoxin 100.0 1.3E-46 2.7E-51 378.2 42.8 362 1-394 1-366 (377)
32 PTZ00153 lipoamide dehydrogena 100.0 1.8E-47 3.9E-52 401.1 38.0 395 4-428 116-648 (659)
33 PRK13748 putative mercuric red 100.0 7.8E-48 1.7E-52 406.7 34.6 395 3-429 97-545 (561)
34 PRK06912 acoL dihydrolipoamide 100.0 5.7E-48 1.2E-52 397.0 32.1 392 6-428 2-446 (458)
35 PRK06327 dihydrolipoamide dehy 100.0 1.5E-47 3.3E-52 395.4 33.5 399 1-429 1-464 (475)
36 PRK14727 putative mercuric red 100.0 3.9E-47 8.5E-52 392.4 36.0 394 4-429 16-463 (479)
37 TIGR03452 mycothione_red mycot 100.0 5.6E-47 1.2E-51 388.2 35.9 390 3-427 1-446 (452)
38 KOG0405 Pyridine nucleotide-di 100.0 8.9E-48 1.9E-52 354.6 24.0 394 3-429 19-471 (478)
39 PRK06292 dihydrolipoamide dehy 100.0 6.8E-47 1.5E-51 390.2 32.3 394 3-428 2-448 (460)
40 TIGR03385 CoA_CoA_reduc CoA-di 100.0 1.5E-45 3.2E-50 376.7 39.4 389 18-429 1-419 (427)
41 TIGR01350 lipoamide_DH dihydro 100.0 4.8E-46 1E-50 384.2 32.9 394 5-427 2-448 (461)
42 COG1251 NirB NAD(P)H-nitrite r 100.0 1.7E-45 3.6E-50 371.4 33.9 388 3-416 2-394 (793)
43 KOG1335 Dihydrolipoamide dehyd 100.0 7.3E-46 1.6E-50 346.1 23.1 398 3-429 38-494 (506)
44 COG1252 Ndh NADH dehydrogenase 100.0 5.8E-41 1.2E-45 328.3 28.1 301 4-333 3-332 (405)
45 PTZ00318 NADH dehydrogenase-li 100.0 9.6E-40 2.1E-44 332.5 29.6 298 3-332 9-347 (424)
46 TIGR03169 Nterm_to_SelD pyridi 100.0 1.4E-37 3.1E-42 311.5 30.6 297 6-332 1-310 (364)
47 PRK10262 thioredoxin reductase 100.0 1.8E-36 3.9E-41 298.2 26.0 294 3-329 5-311 (321)
48 TIGR01292 TRX_reduct thioredox 100.0 1.4E-35 3.1E-40 289.1 29.4 285 5-330 1-298 (300)
49 TIGR03140 AhpF alkyl hydropero 100.0 4.9E-36 1.1E-40 312.0 25.6 290 4-330 212-510 (515)
50 COG0492 TrxB Thioredoxin reduc 100.0 9.2E-35 2E-39 278.7 26.3 287 3-329 2-297 (305)
51 TIGR03143 AhpF_homolog putativ 100.0 9.6E-35 2.1E-39 304.5 28.6 291 1-329 1-305 (555)
52 PRK15317 alkyl hydroperoxide r 100.0 8.7E-35 1.9E-39 303.0 26.7 290 4-330 211-509 (517)
53 TIGR01316 gltA glutamate synth 100.0 3.4E-34 7.3E-39 293.3 24.1 285 3-329 132-446 (449)
54 KOG1346 Programmed cell death 100.0 3.6E-34 7.8E-39 270.0 21.7 403 4-416 178-652 (659)
55 PRK12831 putative oxidoreducta 100.0 1.2E-33 2.7E-38 289.6 25.7 287 3-330 139-458 (464)
56 COG0446 HcaD Uncharacterized N 100.0 1.6E-31 3.5E-36 272.3 39.5 385 7-415 1-409 (415)
57 PRK12778 putative bifunctional 100.0 6E-32 1.3E-36 293.3 25.0 286 3-330 430-747 (752)
58 PRK09853 putative selenate red 100.0 1.1E-31 2.5E-36 288.4 26.8 295 4-348 539-856 (1019)
59 PRK11749 dihydropyrimidine deh 100.0 4.1E-31 8.8E-36 271.9 25.0 283 4-330 140-449 (457)
60 PRK12779 putative bifunctional 100.0 6.9E-31 1.5E-35 286.9 27.0 285 4-330 306-624 (944)
61 PRK12770 putative glutamate sy 100.0 4.5E-31 9.8E-36 262.7 22.1 288 4-330 18-347 (352)
62 PRK12775 putative trifunctiona 100.0 4.8E-30 1E-34 282.8 23.9 284 4-329 430-751 (1006)
63 KOG2495 NADH-dehydrogenase (ub 100.0 5.2E-30 1.1E-34 244.1 19.9 295 3-329 54-393 (491)
64 PRK12810 gltD glutamate syntha 100.0 1E-29 2.2E-34 262.0 23.2 289 4-330 143-462 (471)
65 TIGR03315 Se_ygfK putative sel 100.0 3.5E-29 7.7E-34 270.7 23.7 280 4-332 537-839 (1012)
66 TIGR01318 gltD_gamma_fam gluta 100.0 1.8E-28 3.8E-33 252.0 25.5 284 4-330 141-463 (467)
67 PRK12814 putative NADPH-depend 100.0 1.8E-28 3.9E-33 261.1 23.3 282 4-331 193-499 (652)
68 PRK13984 putative oxidoreducta 100.0 3.5E-28 7.7E-33 258.5 25.0 280 4-330 283-599 (604)
69 PRK12769 putative oxidoreducta 100.0 7.8E-28 1.7E-32 257.3 27.4 284 4-330 327-649 (654)
70 TIGR01317 GOGAT_sm_gam glutama 100.0 8E-28 1.7E-32 248.1 24.3 290 4-330 143-476 (485)
71 KOG0404 Thioredoxin reductase 100.0 2.4E-28 5.1E-33 213.2 16.4 281 3-301 7-296 (322)
72 TIGR01372 soxA sarcosine oxida 100.0 9.1E-27 2E-31 258.4 29.4 278 4-329 163-468 (985)
73 PLN02852 ferredoxin-NADP+ redu 100.0 5.7E-27 1.2E-31 238.2 23.5 291 4-331 26-420 (491)
74 COG3634 AhpF Alkyl hydroperoxi 100.0 2.4E-28 5.3E-33 226.0 12.0 271 4-302 211-493 (520)
75 PRK12809 putative oxidoreducta 100.0 1.4E-26 3.1E-31 246.6 25.3 284 4-330 310-632 (639)
76 PRK12771 putative glutamate sy 99.9 3.7E-25 8E-30 233.2 24.4 281 4-330 137-441 (564)
77 PLN02172 flavin-containing mon 99.9 8.7E-24 1.9E-28 215.7 23.8 289 1-332 7-352 (461)
78 KOG3851 Sulfide:quinone oxidor 99.9 5.8E-22 1.2E-26 182.1 16.4 298 3-329 38-357 (446)
79 KOG2755 Oxidoreductase [Genera 99.9 3.7E-21 8E-26 172.3 13.2 266 6-301 1-323 (334)
80 PF00743 FMO-like: Flavin-bind 99.9 1.3E-20 2.8E-25 194.9 17.5 299 5-332 2-396 (531)
81 COG0493 GltD NADPH-dependent g 99.8 1.4E-20 3E-25 189.8 13.9 288 4-329 123-447 (457)
82 PRK06567 putative bifunctional 99.8 3E-19 6.6E-24 190.4 20.1 273 4-329 383-766 (1028)
83 PF07992 Pyr_redox_2: Pyridine 99.8 2.1E-21 4.5E-26 177.9 1.7 148 6-169 1-159 (201)
84 PF13738 Pyr_redox_3: Pyridine 99.7 6.5E-18 1.4E-22 155.0 11.0 174 8-196 1-201 (203)
85 PF13434 K_oxygenase: L-lysine 99.7 6.3E-17 1.4E-21 159.0 14.5 248 4-261 2-340 (341)
86 PRK05329 anaerobic glycerol-3- 99.7 3.8E-16 8.2E-21 157.0 19.0 160 163-330 216-418 (422)
87 COG3486 IucD Lysine/ornithine 99.7 5.8E-15 1.3E-19 141.5 25.7 316 1-332 2-414 (436)
88 KOG0399 Glutamate synthase [Am 99.7 5.1E-17 1.1E-21 169.4 11.7 285 4-329 1785-2116(2142)
89 COG2072 TrkA Predicted flavopr 99.7 7.9E-16 1.7E-20 156.7 16.0 184 2-197 6-210 (443)
90 COG1148 HdrA Heterodisulfide r 99.6 1.1E-14 2.5E-19 141.4 18.9 197 111-327 298-539 (622)
91 PTZ00188 adrenodoxin reductase 99.6 1.7E-14 3.8E-19 144.8 18.0 272 4-304 39-420 (506)
92 KOG1800 Ferredoxin/adrenodoxin 99.6 6.6E-15 1.4E-19 139.1 13.4 153 4-183 20-180 (468)
93 KOG1399 Flavin-containing mono 99.6 1.2E-14 2.5E-19 146.2 16.1 240 2-270 4-277 (448)
94 PF00070 Pyr_redox: Pyridine n 99.5 2.1E-13 4.5E-18 105.0 11.1 80 164-246 1-80 (80)
95 COG4529 Uncharacterized protei 99.3 1.3E-09 2.8E-14 108.0 23.3 309 5-329 2-459 (474)
96 COG2081 Predicted flavoprotein 99.2 3.5E-10 7.5E-15 109.3 15.4 86 175-263 82-170 (408)
97 TIGR03378 glycerol3P_GlpB glyc 99.2 4.2E-09 9.1E-14 105.0 21.9 123 202-329 261-419 (419)
98 PRK09897 hypothetical protein; 99.2 1.3E-08 2.8E-13 105.6 26.3 167 5-184 2-213 (534)
99 COG0029 NadB Aspartate oxidase 99.1 7.6E-10 1.6E-14 109.4 11.8 223 84-332 147-397 (518)
100 PRK08401 L-aspartate oxidase; 99.1 5.9E-10 1.3E-14 115.2 10.7 54 274-330 309-364 (466)
101 PRK07804 L-aspartate oxidase; 99.1 4E-09 8.7E-14 110.9 16.8 35 4-41 16-50 (541)
102 PLN02463 lycopene beta cyclase 99.1 1.8E-08 3.9E-13 102.8 21.0 120 4-127 28-171 (447)
103 TIGR00551 nadB L-aspartate oxi 99.1 1.3E-09 2.7E-14 113.4 12.5 54 274-330 332-387 (488)
104 COG3075 GlpB Anaerobic glycero 99.0 3.2E-09 6.9E-14 99.3 12.8 124 202-330 256-415 (421)
105 PRK08071 L-aspartate oxidase; 99.0 3E-09 6.4E-14 111.0 11.9 55 274-330 331-386 (510)
106 PF03486 HI0933_like: HI0933-l 99.0 9.2E-10 2E-14 110.7 6.6 118 5-125 1-166 (409)
107 PRK08275 putative oxidoreducta 99.0 1.2E-08 2.6E-13 107.8 15.1 37 4-41 9-45 (554)
108 TIGR01790 carotene-cycl lycope 98.9 3.6E-08 7.7E-13 99.8 16.7 116 6-125 1-141 (388)
109 PRK06854 adenylylsulfate reduc 98.9 1.4E-08 3E-13 108.1 13.4 35 4-41 11-47 (608)
110 TIGR01176 fum_red_Fp fumarate 98.9 2.1E-08 4.6E-13 106.0 13.4 55 274-330 356-411 (580)
111 PRK13800 putative oxidoreducta 98.9 2.5E-08 5.5E-13 110.8 14.4 35 4-41 13-47 (897)
112 PRK06847 hypothetical protein; 98.9 1.5E-08 3.2E-13 102.0 11.4 124 1-127 1-165 (375)
113 PRK06452 sdhA succinate dehydr 98.9 7.4E-08 1.6E-12 101.8 17.0 35 4-41 5-39 (566)
114 PRK09231 fumarate reductase fl 98.8 4.5E-08 9.7E-13 103.7 14.9 70 259-330 340-412 (582)
115 TIGR01812 sdhA_frdA_Gneg succi 98.8 5.3E-08 1.2E-12 103.3 15.4 33 6-41 1-33 (566)
116 PRK12842 putative succinate de 98.8 5.9E-09 1.3E-13 110.6 8.1 103 161-264 156-277 (574)
117 PRK06263 sdhA succinate dehydr 98.8 3.4E-08 7.3E-13 104.1 13.7 54 274-330 347-401 (543)
118 COG0579 Predicted dehydrogenas 98.8 1.7E-07 3.7E-12 93.6 17.7 60 204-264 153-213 (429)
119 PRK10157 putative oxidoreducta 98.8 2.8E-08 6E-13 101.7 12.0 126 1-129 1-168 (428)
120 PRK09077 L-aspartate oxidase; 98.8 2.1E-08 4.6E-13 105.3 11.3 56 274-331 352-408 (536)
121 PRK07843 3-ketosteroid-delta-1 98.8 2.4E-08 5.3E-13 105.3 11.3 107 161-269 159-277 (557)
122 PRK07512 L-aspartate oxidase; 98.8 3.3E-08 7.2E-13 103.3 11.9 55 274-330 340-395 (513)
123 PRK11728 hydroxyglutarate oxid 98.8 1.9E-07 4.2E-12 94.6 17.1 58 203-263 148-205 (393)
124 PRK06069 sdhA succinate dehydr 98.8 3.3E-08 7.2E-13 104.9 11.9 35 4-41 5-42 (577)
125 PRK07395 L-aspartate oxidase; 98.8 2.6E-08 5.7E-13 104.7 10.9 35 3-41 8-42 (553)
126 PRK06834 hypothetical protein; 98.8 5E-08 1.1E-12 101.3 12.4 125 3-130 2-161 (488)
127 PLN02815 L-aspartate oxidase 98.8 2.4E-07 5.2E-12 98.0 17.0 54 274-329 376-430 (594)
128 PRK10015 oxidoreductase; Provi 98.8 7E-08 1.5E-12 98.6 12.2 124 1-127 1-166 (429)
129 PRK08641 sdhA succinate dehydr 98.8 8.1E-08 1.8E-12 101.9 13.1 37 2-41 1-37 (589)
130 TIGR02032 GG-red-SF geranylger 98.7 4.4E-08 9.5E-13 94.9 10.1 120 5-127 1-150 (295)
131 TIGR01292 TRX_reduct thioredox 98.7 1.5E-07 3.2E-12 91.5 13.2 99 164-265 2-115 (300)
132 PRK06184 hypothetical protein; 98.7 6.3E-08 1.4E-12 101.3 11.3 124 2-128 1-171 (502)
133 COG0644 FixC Dehydrogenases (f 98.7 4.5E-08 9.9E-13 99.2 9.8 124 4-130 3-157 (396)
134 PF01266 DAO: FAD dependent ox 98.7 8.6E-08 1.9E-12 95.4 11.5 60 203-264 146-205 (358)
135 PRK07251 pyridine nucleotide-d 98.7 4E-08 8.7E-13 101.0 9.2 99 4-128 157-256 (438)
136 PRK04176 ribulose-1,5-biphosph 98.7 5.8E-08 1.3E-12 91.9 9.2 117 4-125 25-173 (257)
137 TIGR02061 aprA adenosine phosp 98.7 1.6E-07 3.5E-12 99.4 13.5 33 6-41 1-37 (614)
138 PRK07190 hypothetical protein; 98.7 9.5E-08 2.1E-12 99.1 11.3 126 1-129 1-169 (487)
139 PRK09126 hypothetical protein; 98.7 1.6E-07 3.5E-12 95.1 11.6 126 1-130 1-172 (392)
140 PRK08773 2-octaprenyl-3-methyl 98.7 9.4E-08 2E-12 96.9 9.9 124 3-129 5-173 (392)
141 COG1053 SdhA Succinate dehydro 98.6 1.9E-07 4.2E-12 97.4 11.9 37 2-41 4-40 (562)
142 PF02852 Pyr_redox_dim: Pyridi 98.6 1.3E-08 2.9E-13 83.3 2.5 83 345-427 4-107 (110)
143 PRK05192 tRNA uridine 5-carbox 98.6 1.8E-07 4E-12 97.3 10.5 121 1-125 1-157 (618)
144 PRK08244 hypothetical protein; 98.6 1.8E-07 4E-12 97.7 10.6 121 5-128 3-162 (493)
145 PRK07333 2-octaprenyl-6-methox 98.6 2.1E-07 4.5E-12 94.6 10.6 123 5-130 2-172 (403)
146 TIGR00292 thiazole biosynthesi 98.6 2.8E-07 6.2E-12 87.0 10.6 116 4-124 21-169 (254)
147 TIGR01811 sdhA_Bsu succinate d 98.6 6.4E-07 1.4E-11 95.3 14.5 31 7-40 1-31 (603)
148 PRK06134 putative FAD-binding 98.6 2.4E-07 5.1E-12 98.4 11.2 101 162-263 161-279 (581)
149 TIGR01350 lipoamide_DH dihydro 98.6 3.7E-07 8E-12 94.6 12.4 99 4-128 170-272 (461)
150 PRK08850 2-octaprenyl-6-methox 98.6 2.3E-07 4.9E-12 94.5 9.6 125 1-128 1-171 (405)
151 COG2509 Uncharacterized FAD-de 98.6 1.3E-06 2.7E-11 86.0 14.0 87 180-267 149-235 (486)
152 PRK08013 oxidoreductase; Provi 98.5 2.2E-07 4.8E-12 94.4 9.0 123 3-128 2-171 (400)
153 PRK08849 2-octaprenyl-3-methyl 98.5 2.8E-07 6.1E-12 93.1 9.3 124 3-129 2-171 (384)
154 PRK07494 2-octaprenyl-6-methox 98.5 3.8E-07 8.3E-12 92.3 10.2 37 2-41 5-41 (388)
155 PRK04176 ribulose-1,5-biphosph 98.5 5.3E-06 1.1E-10 78.6 16.9 171 157-331 20-253 (257)
156 PRK08274 tricarballylate dehyd 98.5 4E-06 8.6E-11 87.0 17.1 64 204-268 131-199 (466)
157 PRK08163 salicylate hydroxylas 98.5 3.8E-07 8.2E-12 92.5 9.2 124 1-127 1-168 (396)
158 PTZ00363 rab-GDP dissociation 98.5 3.7E-06 7.9E-11 85.7 16.2 61 203-263 231-291 (443)
159 PRK07045 putative monooxygenas 98.5 4.1E-07 9E-12 92.0 9.4 123 1-126 1-166 (388)
160 PRK13977 myosin-cross-reactive 98.5 1.1E-06 2.4E-11 90.7 12.3 90 172-261 192-292 (576)
161 PRK00711 D-amino acid dehydrog 98.5 5.1E-06 1.1E-10 84.9 17.2 57 204-262 201-257 (416)
162 PRK08020 ubiF 2-octaprenyl-3-m 98.5 7.5E-07 1.6E-11 90.2 10.7 122 3-127 4-171 (391)
163 PRK06185 hypothetical protein; 98.5 5.6E-07 1.2E-11 91.6 9.6 36 3-41 5-40 (407)
164 PRK07364 2-octaprenyl-6-methox 98.5 5.9E-07 1.3E-11 91.7 9.7 36 3-41 17-52 (415)
165 PLN02697 lycopene epsilon cycl 98.5 5.7E-07 1.2E-11 93.5 9.5 116 4-125 108-248 (529)
166 PRK07236 hypothetical protein; 98.5 1.1E-06 2.3E-11 89.0 11.2 121 3-127 5-156 (386)
167 PRK05714 2-octaprenyl-3-methyl 98.5 6.8E-07 1.5E-11 91.0 9.7 122 5-129 3-172 (405)
168 PF03486 HI0933_like: HI0933-l 98.4 1.4E-06 3E-11 87.9 11.3 98 164-262 2-166 (409)
169 TIGR00292 thiazole biosynthesi 98.4 1.8E-05 3.9E-10 74.8 18.0 167 161-330 20-251 (254)
170 PRK08132 FAD-dependent oxidore 98.4 9.9E-07 2.2E-11 93.3 10.6 35 4-41 23-57 (547)
171 PF05834 Lycopene_cycl: Lycope 98.4 1.1E-06 2.4E-11 88.4 10.3 116 6-126 1-143 (374)
172 PF13454 NAD_binding_9: FAD-NA 98.4 2.3E-06 5E-11 74.7 10.8 34 8-41 1-36 (156)
173 TIGR01377 soxA_mon sarcosine o 98.4 1.3E-05 2.9E-10 80.7 18.0 57 203-262 144-200 (380)
174 PRK07608 ubiquinone biosynthes 98.4 8E-07 1.7E-11 89.9 9.0 122 4-129 5-171 (388)
175 PRK06183 mhpA 3-(3-hydroxyphen 98.4 1.4E-06 3.1E-11 91.9 11.2 35 4-41 10-44 (538)
176 PRK15317 alkyl hydroperoxide r 98.4 6.6E-06 1.4E-10 86.3 15.8 101 162-264 211-324 (517)
177 PRK05732 2-octaprenyl-6-methox 98.4 8.8E-07 1.9E-11 89.8 9.0 44 84-127 126-171 (395)
178 TIGR02023 BchP-ChlP geranylger 98.4 1.4E-06 3E-11 88.2 10.1 32 5-39 1-32 (388)
179 PRK11445 putative oxidoreducta 98.4 1.9E-06 4.2E-11 85.9 10.9 119 5-127 2-159 (351)
180 TIGR00275 flavoprotein, HI0933 98.4 5.1E-06 1.1E-10 84.3 14.0 84 175-262 76-160 (400)
181 PF01134 GIDA: Glucose inhibit 98.4 8.3E-07 1.8E-11 87.8 7.8 114 6-123 1-150 (392)
182 PRK09754 phenylpropionate diox 98.4 2.2E-06 4.8E-11 86.9 11.2 99 162-264 3-114 (396)
183 TIGR03385 CoA_CoA_reduc CoA-di 98.4 1.6E-06 3.4E-11 89.0 10.1 100 4-128 137-236 (427)
184 PF00070 Pyr_redox: Pyridine n 98.4 7.6E-07 1.6E-11 68.3 5.9 78 6-109 1-80 (80)
185 COG1233 Phytoene dehydrogenase 98.4 6.7E-07 1.4E-11 92.9 7.3 57 203-260 223-279 (487)
186 TIGR03140 AhpF alkyl hydropero 98.4 5.1E-06 1.1E-10 87.1 13.8 102 161-264 211-325 (515)
187 PRK06126 hypothetical protein; 98.4 1.8E-06 3.8E-11 91.5 10.5 35 4-41 7-41 (545)
188 PF01494 FAD_binding_3: FAD bi 98.4 5.3E-07 1.1E-11 89.6 6.0 35 4-41 1-35 (356)
189 PRK07588 hypothetical protein; 98.4 2.5E-06 5.4E-11 86.4 10.9 120 5-127 1-160 (391)
190 TIGR02734 crtI_fam phytoene de 98.4 2.7E-06 5.8E-11 89.2 11.5 58 204-262 219-276 (502)
191 PRK12409 D-amino acid dehydrog 98.4 9.6E-06 2.1E-10 82.7 15.3 57 204-262 197-258 (410)
192 PF13738 Pyr_redox_3: Pyridine 98.4 3.8E-06 8.1E-11 76.7 11.0 98 166-265 1-143 (203)
193 COG0654 UbiH 2-polyprenyl-6-me 98.4 1.6E-06 3.5E-11 87.6 9.4 120 4-126 2-163 (387)
194 TIGR01984 UbiH 2-polyprenyl-6- 98.3 1.3E-06 2.7E-11 88.2 8.6 119 6-127 1-164 (382)
195 PRK06175 L-aspartate oxidase; 98.3 2.3E-06 5E-11 87.6 10.5 54 274-330 330-385 (433)
196 TIGR03364 HpnW_proposed FAD de 98.3 1.2E-05 2.7E-10 80.6 15.5 54 203-263 144-198 (365)
197 TIGR01789 lycopene_cycl lycope 98.3 3.1E-06 6.7E-11 84.8 11.1 116 6-126 1-139 (370)
198 TIGR02028 ChlP geranylgeranyl 98.3 2E-06 4.4E-11 87.2 9.8 33 5-40 1-33 (398)
199 PRK05945 sdhA succinate dehydr 98.3 2E-06 4.3E-11 91.3 9.9 38 3-41 2-39 (575)
200 PLN02612 phytoene desaturase 98.3 9.5E-06 2E-10 85.9 14.9 56 204-259 308-363 (567)
201 PF12831 FAD_oxidored: FAD dep 98.3 4.6E-07 1E-11 92.7 4.6 115 6-123 1-148 (428)
202 COG0665 DadA Glycine/D-amino a 98.3 2.3E-05 4.9E-10 79.2 16.8 58 203-263 155-213 (387)
203 TIGR02731 phytoene_desat phyto 98.3 1.2E-05 2.7E-10 83.0 15.2 58 203-260 212-274 (453)
204 PLN00093 geranylgeranyl diphos 98.3 3E-06 6.4E-11 87.0 10.4 34 4-40 39-72 (450)
205 PRK09564 coenzyme A disulfide 98.3 3.5E-06 7.7E-11 86.8 11.1 101 163-265 1-118 (444)
206 PLN02172 flavin-containing mon 98.3 1.6E-05 3.4E-10 81.9 15.6 103 161-265 9-178 (461)
207 PRK11259 solA N-methyltryptoph 98.3 3.3E-06 7.1E-11 85.0 10.4 34 4-40 3-36 (376)
208 PRK04965 NADH:flavorubredoxin 98.3 2.9E-06 6.2E-11 85.5 9.8 99 4-127 141-241 (377)
209 TIGR03329 Phn_aa_oxid putative 98.3 1.1E-05 2.3E-10 83.6 14.3 55 203-261 182-236 (460)
210 PRK05868 hypothetical protein; 98.3 3.8E-06 8.3E-11 84.4 10.6 119 5-126 2-161 (372)
211 TIGR01988 Ubi-OHases Ubiquinon 98.3 2.5E-06 5.5E-11 86.1 9.3 119 6-127 1-165 (385)
212 PRK06912 acoL dihydrolipoamide 98.3 3.6E-06 7.8E-11 87.1 10.0 98 5-128 171-271 (458)
213 PRK01747 mnmC bifunctional tRN 98.3 1.2E-05 2.5E-10 87.1 14.4 58 203-263 407-464 (662)
214 TIGR01373 soxB sarcosine oxida 98.3 4.5E-05 9.8E-10 77.7 17.8 57 204-261 183-239 (407)
215 PRK07233 hypothetical protein; 98.3 4.3E-06 9.3E-11 85.8 10.3 56 204-261 198-253 (434)
216 COG1635 THI4 Ribulose 1,5-bisp 98.3 1.3E-06 2.7E-11 77.8 5.4 35 4-41 30-64 (262)
217 PRK06753 hypothetical protein; 98.3 6.9E-06 1.5E-10 82.6 11.6 119 5-126 1-153 (373)
218 PRK12266 glpD glycerol-3-phosp 98.3 2.7E-06 5.8E-11 89.0 8.7 38 1-41 3-40 (508)
219 PRK06481 fumarate reductase fl 98.3 5.4E-06 1.2E-10 86.7 10.9 36 3-41 60-95 (506)
220 TIGR01989 COQ6 Ubiquinone bios 98.3 3.7E-06 8.1E-11 86.4 9.5 45 85-129 134-187 (437)
221 PRK06617 2-octaprenyl-6-methox 98.2 3.5E-06 7.6E-11 84.8 9.0 33 5-40 2-34 (374)
222 PRK14694 putative mercuric red 98.2 5E-06 1.1E-10 86.3 10.2 98 4-128 178-276 (468)
223 PRK06847 hypothetical protein; 98.2 1.5E-05 3.3E-10 80.1 13.4 102 162-265 4-166 (375)
224 PRK05976 dihydrolipoamide dehy 98.2 5.7E-06 1.2E-10 86.0 10.4 99 4-128 180-284 (472)
225 PF07992 Pyr_redox_2: Pyridine 98.2 2.6E-06 5.6E-11 77.6 6.9 137 164-301 1-200 (201)
226 PRK06416 dihydrolipoamide dehy 98.2 5.8E-06 1.3E-10 85.7 10.1 98 5-128 173-275 (462)
227 PRK13369 glycerol-3-phosphate 98.2 4.2E-06 9.1E-11 87.5 9.0 38 1-41 3-40 (502)
228 PTZ00383 malate:quinone oxidor 98.2 4.3E-05 9.4E-10 79.1 16.1 58 204-263 211-274 (497)
229 PLN02661 Putative thiazole syn 98.2 8.3E-06 1.8E-10 79.5 10.0 35 4-41 92-127 (357)
230 TIGR03169 Nterm_to_SelD pyridi 98.2 7.3E-06 1.6E-10 82.1 10.1 97 164-265 1-110 (364)
231 PRK11101 glpA sn-glycerol-3-ph 98.2 4E-06 8.6E-11 88.4 8.5 35 4-41 6-40 (546)
232 PRK06116 glutathione reductase 98.2 7.1E-06 1.5E-10 84.7 10.2 99 4-128 167-268 (450)
233 PTZ00318 NADH dehydrogenase-li 98.2 9.4E-06 2E-10 83.1 11.0 102 161-265 9-128 (424)
234 PF01946 Thi4: Thi4 family; PD 98.2 1.8E-06 3.8E-11 77.4 4.7 35 4-41 17-51 (230)
235 TIGR01424 gluta_reduc_2 glutat 98.2 7.5E-06 1.6E-10 84.4 10.1 98 4-127 166-265 (446)
236 PRK13512 coenzyme A disulfide 98.2 7.7E-06 1.7E-10 84.1 10.2 95 5-127 149-243 (438)
237 KOG2820 FAD-dependent oxidored 98.2 4.7E-06 1E-10 78.8 7.5 47 78-124 160-211 (399)
238 COG1249 Lpd Pyruvate/2-oxoglut 98.2 1E-05 2.2E-10 82.4 10.4 100 4-129 173-276 (454)
239 PRK05249 soluble pyridine nucl 98.2 9.8E-06 2.1E-10 84.0 10.4 99 4-128 175-275 (461)
240 PRK06996 hypothetical protein; 98.1 8.6E-06 1.9E-10 82.7 9.5 119 4-123 11-172 (398)
241 COG0445 GidA Flavin-dependent 98.1 2.4E-06 5.3E-11 85.8 5.2 120 1-124 1-157 (621)
242 PRK07573 sdhA succinate dehydr 98.1 1.5E-05 3.2E-10 85.5 11.6 34 4-40 35-68 (640)
243 PRK07538 hypothetical protein; 98.1 9.5E-06 2.1E-10 82.8 9.7 34 5-41 1-34 (413)
244 TIGR02374 nitri_red_nirB nitri 98.1 8E-06 1.7E-10 89.7 9.7 97 165-265 1-111 (785)
245 PRK08294 phenol 2-monooxygenas 98.1 1.7E-05 3.6E-10 85.1 11.7 38 1-41 29-67 (634)
246 TIGR01813 flavo_cyto_c flavocy 98.1 1.4E-05 3E-10 82.3 10.8 33 6-41 1-34 (439)
247 TIGR02053 MerA mercuric reduct 98.1 1.1E-05 2.4E-10 83.6 10.1 98 5-128 167-269 (463)
248 PRK06370 mercuric reductase; V 98.1 1.2E-05 2.6E-10 83.3 10.3 99 4-128 171-274 (463)
249 PRK12770 putative glutamate sy 98.1 7.6E-06 1.6E-10 81.6 8.3 103 161-263 17-132 (352)
250 TIGR02360 pbenz_hydroxyl 4-hyd 98.1 1E-05 2.2E-10 81.9 9.2 34 5-41 3-36 (390)
251 PRK07803 sdhA succinate dehydr 98.1 9.3E-06 2E-10 86.9 9.2 35 4-41 8-42 (626)
252 PRK08243 4-hydroxybenzoate 3-m 98.1 1.6E-05 3.5E-10 80.5 10.6 35 4-41 2-36 (392)
253 PRK08205 sdhA succinate dehydr 98.1 1.4E-05 3E-10 85.0 10.3 37 1-41 1-38 (583)
254 PRK07846 mycothione reductase; 98.1 1.7E-05 3.7E-10 81.7 10.6 98 4-128 166-265 (451)
255 PRK07121 hypothetical protein; 98.1 8.2E-05 1.8E-09 77.7 15.7 66 203-268 176-246 (492)
256 PRK06327 dihydrolipoamide dehy 98.1 1.4E-05 3.1E-10 83.0 9.9 99 4-128 183-287 (475)
257 PRK07818 dihydrolipoamide dehy 98.1 1.5E-05 3.3E-10 82.6 10.1 99 4-128 172-276 (466)
258 PRK07236 hypothetical protein; 98.1 2.1E-05 4.5E-10 79.6 10.8 103 161-265 5-157 (386)
259 PF00890 FAD_binding_2: FAD bi 98.1 4.7E-06 1E-10 85.2 6.2 33 6-41 1-33 (417)
260 PRK14989 nitrite reductase sub 98.1 1.7E-05 3.6E-10 87.4 10.7 100 162-265 3-116 (847)
261 TIGR01421 gluta_reduc_1 glutat 98.1 1.7E-05 3.6E-10 81.8 10.2 99 4-128 166-268 (450)
262 COG1252 Ndh NADH dehydrogenase 98.1 1.7E-05 3.6E-10 79.0 9.6 99 162-265 3-114 (405)
263 PRK09078 sdhA succinate dehydr 98.1 1.6E-05 3.5E-10 84.7 10.2 35 4-41 12-46 (598)
264 PRK12779 putative bifunctional 98.1 1.2E-05 2.5E-10 89.5 9.4 93 161-263 305-406 (944)
265 PRK11749 dihydropyrimidine deh 98.1 1E-05 2.2E-10 83.7 8.3 90 161-261 139-236 (457)
266 PRK10262 thioredoxin reductase 98.1 0.00011 2.3E-09 72.4 15.2 101 161-265 5-120 (321)
267 TIGR02032 GG-red-SF geranylger 98.1 5.3E-05 1.2E-09 73.2 12.7 98 164-263 2-149 (295)
268 PRK09853 putative selenate red 98.1 2.2E-05 4.8E-10 86.4 11.0 92 161-264 538-637 (1019)
269 PRK07845 flavoprotein disulfid 98.1 2E-05 4.4E-10 81.6 10.3 98 5-128 178-277 (466)
270 PF01134 GIDA: Glucose inhibit 98.0 4.2E-05 9.2E-10 75.8 11.8 95 164-260 1-150 (392)
271 PRK06475 salicylate hydroxylas 98.0 2.1E-05 4.5E-10 80.0 9.9 34 5-41 3-36 (400)
272 COG0446 HcaD Uncharacterized N 98.0 1.6E-05 3.4E-10 80.9 9.1 97 5-126 137-238 (415)
273 PLN02507 glutathione reductase 98.0 2.4E-05 5.3E-10 81.6 10.4 99 4-128 203-303 (499)
274 COG1635 THI4 Ribulose 1,5-bisp 98.0 0.00026 5.5E-09 63.4 15.1 167 161-331 29-258 (262)
275 PRK06115 dihydrolipoamide dehy 98.0 2.3E-05 4.9E-10 81.3 10.0 98 4-127 174-278 (466)
276 PRK07057 sdhA succinate dehydr 98.0 2.3E-05 4.9E-10 83.5 10.1 35 4-41 12-46 (591)
277 TIGR03219 salicylate_mono sali 98.0 4.4E-05 9.5E-10 78.0 11.9 33 6-41 2-35 (414)
278 PTZ00052 thioredoxin reductase 98.0 2.5E-05 5.3E-10 81.6 10.1 97 5-128 183-281 (499)
279 PTZ00139 Succinate dehydrogena 98.0 2.3E-05 5E-10 83.7 10.0 35 4-41 29-63 (617)
280 TIGR02732 zeta_caro_desat caro 98.0 0.00014 3.1E-09 75.4 15.5 65 203-267 218-289 (474)
281 PLN02487 zeta-carotene desatur 98.0 6E-05 1.3E-09 79.2 12.7 60 202-261 293-359 (569)
282 PRK13748 putative mercuric red 98.0 2.3E-05 5.1E-10 83.3 9.7 98 4-128 270-368 (561)
283 TIGR00136 gidA glucose-inhibit 98.0 2.4E-05 5.2E-10 81.6 9.4 33 5-40 1-33 (617)
284 PLN00128 Succinate dehydrogena 98.0 3.2E-05 7E-10 82.7 10.5 35 4-41 50-84 (635)
285 PRK08010 pyridine nucleotide-d 98.0 3.5E-05 7.5E-10 79.4 10.2 98 4-127 158-256 (441)
286 TIGR01423 trypano_reduc trypan 98.0 3.2E-05 6.9E-10 80.3 9.8 98 4-127 187-290 (486)
287 TIGR03452 mycothione_red mycot 98.0 3.8E-05 8.2E-10 79.3 10.2 97 4-127 169-267 (452)
288 COG3380 Predicted NAD/FAD-depe 98.0 2.3E-05 5.1E-10 72.0 7.5 34 5-41 2-35 (331)
289 PRK14727 putative mercuric red 98.0 3.1E-05 6.7E-10 80.5 9.6 96 5-128 189-286 (479)
290 TIGR01438 TGR thioredoxin and 98.0 3.4E-05 7.4E-10 80.2 9.8 96 5-127 181-281 (484)
291 COG1232 HemY Protoporphyrinoge 98.0 4.2E-05 9.1E-10 77.3 10.1 35 6-41 2-36 (444)
292 PLN02661 Putative thiazole syn 98.0 0.00047 1E-08 67.4 16.8 167 161-331 91-326 (357)
293 TIGR01320 mal_quin_oxido malat 97.9 0.0003 6.6E-09 73.0 16.4 60 203-263 177-241 (483)
294 PRK08958 sdhA succinate dehydr 97.9 4.2E-05 9E-10 81.4 10.2 35 4-41 7-41 (588)
295 PRK06834 hypothetical protein; 97.9 0.00012 2.5E-09 76.3 13.3 101 163-265 4-159 (488)
296 PF04820 Trp_halogenase: Trypt 97.9 3.2E-05 7E-10 79.6 8.9 36 6-41 1-36 (454)
297 TIGR03143 AhpF_homolog putativ 97.9 0.00012 2.6E-09 77.5 13.2 99 163-265 5-117 (555)
298 PRK07045 putative monooxygenas 97.9 0.00014 2.9E-09 73.7 13.1 103 163-265 6-168 (388)
299 TIGR01316 gltA glutamate synth 97.9 2.6E-05 5.5E-10 80.4 7.8 93 161-264 132-233 (449)
300 PRK08244 hypothetical protein; 97.9 0.00013 2.8E-09 76.3 13.2 103 163-265 3-162 (493)
301 PTZ00058 glutathione reductase 97.9 5.7E-05 1.2E-09 79.5 10.3 98 4-127 237-338 (561)
302 PRK06292 dihydrolipoamide dehy 97.9 5.2E-05 1.1E-09 78.6 9.9 98 4-128 169-271 (460)
303 PRK08773 2-octaprenyl-3-methyl 97.9 0.00015 3.3E-09 73.4 13.0 101 162-264 6-171 (392)
304 PLN02464 glycerol-3-phosphate 97.9 4E-05 8.7E-10 82.0 9.0 36 3-41 70-105 (627)
305 PRK13339 malate:quinone oxidor 97.9 0.0005 1.1E-08 71.1 16.7 60 204-264 184-249 (497)
306 PLN02463 lycopene beta cyclase 97.9 0.00014 3E-09 74.6 12.4 98 163-263 29-170 (447)
307 PRK08163 salicylate hydroxylas 97.9 0.00014 3.1E-09 73.7 12.5 101 162-264 4-168 (396)
308 TIGR01318 gltD_gamma_fam gluta 97.9 3.9E-05 8.5E-10 79.4 8.5 93 161-264 140-240 (467)
309 PRK08626 fumarate reductase fl 97.9 6E-05 1.3E-09 81.1 10.0 35 4-41 5-39 (657)
310 PRK12831 putative oxidoreducta 97.9 3.4E-05 7.4E-10 79.7 7.7 94 161-264 139-243 (464)
311 PF13450 NAD_binding_8: NAD(P) 97.8 1.9E-05 4.1E-10 58.3 4.0 30 9-41 1-30 (68)
312 COG0654 UbiH 2-polyprenyl-6-me 97.8 0.00022 4.8E-09 72.1 13.0 100 163-264 3-164 (387)
313 TIGR01317 GOGAT_sm_gam glutama 97.8 4.9E-05 1.1E-09 79.0 8.1 90 161-261 142-239 (485)
314 PLN02852 ferredoxin-NADP+ redu 97.8 5.9E-05 1.3E-09 77.7 8.4 92 161-263 25-127 (491)
315 PRK05714 2-octaprenyl-3-methyl 97.8 0.00028 6E-09 71.9 12.9 100 163-264 3-170 (405)
316 COG0493 GltD NADPH-dependent g 97.8 4.6E-05 1E-09 77.7 7.0 123 108-262 90-220 (457)
317 KOG2415 Electron transfer flav 97.8 0.00033 7.1E-09 68.3 12.3 59 206-264 185-258 (621)
318 PRK07208 hypothetical protein; 97.8 2.7E-05 5.8E-10 81.2 5.5 58 204-261 218-279 (479)
319 KOG1336 Monodehydroascorbate/f 97.8 8.2E-05 1.8E-09 74.0 8.4 101 5-130 214-318 (478)
320 PRK06467 dihydrolipoamide dehy 97.8 0.00012 2.7E-09 75.9 10.1 97 5-128 175-277 (471)
321 PF00743 FMO-like: Flavin-bind 97.8 0.00044 9.5E-09 72.4 14.1 137 163-299 2-194 (531)
322 PRK07333 2-octaprenyl-6-methox 97.8 0.0003 6.5E-09 71.5 12.7 99 164-264 3-169 (403)
323 PLN02985 squalene monooxygenas 97.8 0.00013 2.7E-09 76.4 9.9 35 4-41 43-77 (514)
324 PRK01438 murD UDP-N-acetylmura 97.8 0.00012 2.5E-09 76.4 9.7 82 161-268 15-96 (480)
325 PRK06184 hypothetical protein; 97.8 0.00031 6.8E-09 73.6 13.0 100 163-264 4-170 (502)
326 COG0492 TrxB Thioredoxin reduc 97.8 0.00037 8.1E-09 67.5 12.4 99 163-265 4-118 (305)
327 COG0578 GlpA Glycerol-3-phosph 97.7 6.9E-05 1.5E-09 76.9 7.5 59 203-263 163-226 (532)
328 PRK10157 putative oxidoreducta 97.7 0.00039 8.4E-09 71.3 13.0 98 163-262 6-164 (428)
329 PRK07588 hypothetical protein; 97.7 0.00035 7.5E-09 70.8 12.4 99 164-265 2-161 (391)
330 PRK12778 putative bifunctional 97.7 8E-05 1.7E-09 81.8 8.3 94 161-264 430-532 (752)
331 TIGR03315 Se_ygfK putative sel 97.7 0.00012 2.7E-09 81.0 9.6 91 162-264 537-635 (1012)
332 PRK12810 gltD glutamate syntha 97.7 9.8E-05 2.1E-09 76.6 7.7 90 162-262 143-240 (471)
333 PRK08132 FAD-dependent oxidore 97.7 0.00071 1.5E-08 71.7 14.3 103 162-264 23-187 (547)
334 PLN02546 glutathione reductase 97.7 0.00019 4.2E-09 75.6 9.8 99 4-128 252-353 (558)
335 PF01494 FAD_binding_3: FAD bi 97.7 0.00035 7.6E-09 69.3 11.3 102 164-265 3-175 (356)
336 PRK05868 hypothetical protein; 97.7 0.00032 6.9E-09 70.5 11.0 101 163-265 2-163 (372)
337 PRK07364 2-octaprenyl-6-methox 97.7 0.00049 1.1E-08 70.2 12.6 102 162-265 18-184 (415)
338 PLN02697 lycopene epsilon cycl 97.7 0.00045 9.8E-09 72.1 12.3 98 163-262 109-248 (529)
339 PRK12809 putative oxidoreducta 97.7 0.00011 2.3E-09 79.2 7.9 92 161-263 309-408 (639)
340 TIGR01984 UbiH 2-polyprenyl-6- 97.7 0.00063 1.4E-08 68.6 13.2 98 164-263 1-163 (382)
341 PRK07608 ubiquinone biosynthes 97.6 0.00071 1.5E-08 68.4 13.3 99 163-264 6-169 (388)
342 PRK09126 hypothetical protein; 97.6 0.00062 1.3E-08 68.9 12.8 101 163-265 4-170 (392)
343 PRK12775 putative trifunctiona 97.6 0.00013 2.8E-09 82.1 8.3 92 162-263 430-531 (1006)
344 TIGR01790 carotene-cycl lycope 97.6 0.00067 1.4E-08 68.6 12.8 97 164-262 1-141 (388)
345 PTZ00153 lipoamide dehydrogena 97.6 0.00022 4.8E-09 76.3 9.5 98 5-128 313-430 (659)
346 PF04820 Trp_halogenase: Trypt 97.6 0.00059 1.3E-08 70.3 12.4 58 205-263 155-212 (454)
347 PRK08013 oxidoreductase; Provi 97.6 0.00068 1.5E-08 68.9 12.6 101 163-265 4-171 (400)
348 PF14759 Reductase_C: Reductas 97.6 0.00094 2E-08 51.6 10.3 74 342-417 1-76 (85)
349 PRK06183 mhpA 3-(3-hydroxyphen 97.6 0.00075 1.6E-08 71.4 13.1 102 162-265 10-177 (538)
350 PRK08849 2-octaprenyl-3-methyl 97.6 0.00074 1.6E-08 68.2 12.6 101 163-265 4-170 (384)
351 PRK12843 putative FAD-binding 97.6 0.00024 5.2E-09 75.6 9.3 65 203-268 220-289 (578)
352 PRK06753 hypothetical protein; 97.6 0.00043 9.4E-09 69.6 10.7 100 164-265 2-155 (373)
353 PRK05192 tRNA uridine 5-carbox 97.6 0.00059 1.3E-08 71.6 11.8 95 164-260 6-155 (618)
354 TIGR01988 Ubi-OHases Ubiquinon 97.6 0.00087 1.9E-08 67.5 12.9 99 164-264 1-165 (385)
355 COG1231 Monoamine oxidase [Ami 97.6 0.00058 1.3E-08 67.9 10.9 37 3-42 6-42 (450)
356 PRK12769 putative oxidoreducta 97.6 0.00018 3.8E-09 77.8 8.0 92 161-263 326-425 (654)
357 PRK08255 salicylyl-CoA 5-hydro 97.6 5.8E-05 1.3E-09 82.8 4.2 33 6-41 2-36 (765)
358 COG3573 Predicted oxidoreducta 97.6 0.00044 9.6E-09 65.5 9.4 35 4-41 5-39 (552)
359 PRK07190 hypothetical protein; 97.5 0.00087 1.9E-08 69.8 12.5 100 163-264 6-167 (487)
360 KOG1399 Flavin-containing mono 97.5 0.0016 3.5E-08 66.2 13.9 136 162-298 6-196 (448)
361 COG2072 TrkA Predicted flavopr 97.5 0.0019 4.1E-08 66.3 14.6 99 162-260 8-142 (443)
362 PRK08020 ubiF 2-octaprenyl-3-m 97.5 0.0012 2.6E-08 66.8 12.9 100 163-264 6-171 (391)
363 PRK10015 oxidoreductase; Provi 97.5 0.0012 2.6E-08 67.7 12.8 98 163-262 6-164 (429)
364 PRK08850 2-octaprenyl-6-methox 97.5 0.0011 2.4E-08 67.5 12.5 101 162-264 4-170 (405)
365 PRK12814 putative NADPH-depend 97.5 0.00025 5.5E-09 76.4 7.9 92 161-263 192-291 (652)
366 PTZ00188 adrenodoxin reductase 97.5 0.00049 1.1E-08 70.2 9.1 92 161-263 38-139 (506)
367 PF01946 Thi4: Thi4 family; PD 97.5 0.0022 4.8E-08 57.8 12.0 104 161-264 16-167 (230)
368 KOG2665 Predicted FAD-dependen 97.5 0.0015 3.3E-08 61.6 11.3 63 208-270 200-265 (453)
369 KOG0029 Amine oxidase [Seconda 97.4 0.00015 3.2E-09 75.0 5.1 36 3-41 14-49 (501)
370 PRK06617 2-octaprenyl-6-methox 97.4 0.0014 3E-08 65.9 12.1 99 164-265 3-163 (374)
371 KOG1335 Dihydrolipoamide dehyd 97.4 0.00035 7.5E-09 67.5 6.7 98 4-127 211-316 (506)
372 PRK07494 2-octaprenyl-6-methox 97.4 0.0017 3.8E-08 65.6 12.4 100 162-264 7-169 (388)
373 COG2907 Predicted NAD/FAD-bind 97.4 0.0091 2E-07 57.3 15.9 57 202-260 215-271 (447)
374 COG0644 FixC Dehydrogenases (f 97.4 0.0017 3.8E-08 65.8 12.3 101 163-264 4-154 (396)
375 PRK06185 hypothetical protein; 97.4 0.0021 4.5E-08 65.5 12.8 101 162-263 6-170 (407)
376 TIGR00136 gidA glucose-inhibit 97.4 0.0017 3.7E-08 68.1 12.1 98 164-262 2-154 (617)
377 PRK05732 2-octaprenyl-6-methox 97.4 0.0021 4.5E-08 65.1 12.7 100 163-264 4-171 (395)
378 PRK05335 tRNA (uracil-5-)-meth 97.4 0.0002 4.3E-09 71.8 5.1 34 5-41 3-36 (436)
379 TIGR01372 soxA sarcosine oxida 97.4 0.0017 3.7E-08 73.4 13.0 102 162-265 163-289 (985)
380 TIGR02485 CobZ_N-term precorri 97.4 0.00058 1.3E-08 70.1 8.5 30 9-41 1-30 (432)
381 PRK09897 hypothetical protein; 97.4 0.0029 6.3E-08 66.1 13.4 99 163-263 2-167 (534)
382 PRK12834 putative FAD-binding 97.3 0.00021 4.6E-09 75.6 5.1 37 1-40 1-37 (549)
383 PRK06475 salicylate hydroxylas 97.3 0.0024 5.2E-08 64.9 12.6 100 163-264 3-169 (400)
384 KOG0399 Glutamate synthase [Am 97.3 0.00052 1.1E-08 74.2 7.5 94 161-265 1784-1885(2142)
385 KOG4254 Phytoene desaturase [C 97.3 0.0011 2.4E-08 65.4 9.2 55 204-259 264-318 (561)
386 KOG2311 NAD/FAD-utilizing prot 97.3 0.00039 8.5E-09 68.9 5.9 36 3-41 27-62 (679)
387 PRK13984 putative oxidoreducta 97.3 0.00058 1.3E-08 73.3 7.9 91 161-262 282-380 (604)
388 TIGR00137 gid_trmFO tRNA:m(5)U 97.3 0.00065 1.4E-08 68.6 7.6 34 164-197 2-35 (433)
389 TIGR03219 salicylate_mono sali 97.3 0.0015 3.3E-08 66.7 10.4 99 164-264 2-161 (414)
390 PF12831 FAD_oxidored: FAD dep 97.3 0.00021 4.5E-09 73.3 4.0 95 165-260 2-148 (428)
391 PRK06481 fumarate reductase fl 97.3 0.004 8.6E-08 65.3 13.6 106 163-269 62-259 (506)
392 PRK11883 protoporphyrinogen ox 97.3 0.00029 6.2E-09 72.8 5.1 34 5-41 1-36 (451)
393 PLN02568 polyamine oxidase 97.3 0.00031 6.7E-09 73.8 5.3 41 1-41 2-44 (539)
394 TIGR01789 lycopene_cycl lycope 97.3 0.0015 3.4E-08 65.4 10.1 95 164-264 1-140 (370)
395 TIGR01989 COQ6 Ubiquinone bios 97.2 0.0036 7.8E-08 64.4 12.7 102 164-265 2-186 (437)
396 PRK08243 4-hydroxybenzoate 3-m 97.2 0.0035 7.5E-08 63.5 12.4 102 163-265 3-166 (392)
397 PRK12771 putative glutamate sy 97.2 0.00075 1.6E-08 71.7 7.9 91 161-263 136-235 (564)
398 PRK06126 hypothetical protein; 97.2 0.0036 7.9E-08 66.3 12.9 101 162-264 7-190 (545)
399 TIGR01813 flavo_cyto_c flavocy 97.2 0.0048 1E-07 63.5 13.3 63 206-268 132-199 (439)
400 PRK01438 murD UDP-N-acetylmura 97.2 0.0018 3.9E-08 67.5 10.3 79 4-129 16-94 (480)
401 TIGR00031 UDP-GALP_mutase UDP- 97.2 0.00039 8.5E-09 69.4 4.9 34 5-41 2-35 (377)
402 PTZ00367 squalene epoxidase; P 97.2 0.00038 8.2E-09 73.4 4.8 34 4-40 33-66 (567)
403 PRK06996 hypothetical protein; 97.2 0.0043 9.3E-08 63.0 12.2 98 162-261 11-173 (398)
404 PLN02927 antheraxanthin epoxid 97.2 0.00044 9.6E-09 73.6 5.0 35 3-40 80-114 (668)
405 TIGR02733 desat_CrtD C-3',4' d 97.1 0.00048 1E-08 72.0 5.1 58 203-261 231-293 (492)
406 PLN02576 protoporphyrinogen ox 97.1 0.00051 1.1E-08 71.9 5.1 35 4-41 12-47 (496)
407 KOG2844 Dimethylglycine dehydr 97.1 0.0013 2.8E-08 67.9 7.5 73 185-262 171-243 (856)
408 KOG0404 Thioredoxin reductase 97.1 0.0037 8E-08 56.1 9.4 99 162-264 8-126 (322)
409 PF05834 Lycopene_cycl: Lycope 97.1 0.0054 1.2E-07 61.7 12.0 96 165-263 2-143 (374)
410 TIGR02730 carot_isom carotene 97.1 0.00055 1.2E-08 71.6 5.0 58 204-262 229-286 (493)
411 TIGR00562 proto_IX_ox protopor 97.1 0.00057 1.2E-08 70.9 5.0 34 5-41 3-40 (462)
412 PRK11259 solA N-methyltryptoph 97.1 0.0074 1.6E-07 60.6 12.9 46 214-262 159-204 (376)
413 PLN02268 probable polyamine ox 97.1 0.00061 1.3E-08 70.0 4.9 35 5-42 1-35 (435)
414 KOG2404 Fumarate reductase, fl 97.1 0.0024 5.2E-08 60.4 8.2 75 185-262 122-206 (477)
415 PRK07538 hypothetical protein; 97.1 0.0054 1.2E-07 62.6 11.7 99 164-264 2-167 (413)
416 PF00732 GMC_oxred_N: GMC oxid 97.0 0.00051 1.1E-08 66.6 3.8 66 206-271 195-268 (296)
417 PRK06567 putative bifunctional 97.0 0.0013 2.9E-08 72.1 7.1 34 161-194 382-415 (1028)
418 COG3349 Uncharacterized conser 97.0 0.00072 1.6E-08 68.4 4.8 34 5-41 1-34 (485)
419 PRK12835 3-ketosteroid-delta-1 97.0 0.00077 1.7E-08 71.7 5.2 66 203-268 212-282 (584)
420 PRK11101 glpA sn-glycerol-3-ph 97.0 0.0072 1.6E-07 63.9 12.4 32 163-194 7-38 (546)
421 TIGR02360 pbenz_hydroxyl 4-hyd 97.0 0.0077 1.7E-07 61.0 12.0 101 163-264 3-165 (390)
422 PRK12837 3-ketosteroid-delta-1 97.0 0.00083 1.8E-08 70.5 4.9 64 204-268 173-242 (513)
423 PRK12416 protoporphyrinogen ox 97.0 0.00083 1.8E-08 69.7 4.9 51 205-259 227-277 (463)
424 PF13454 NAD_binding_9: FAD-NA 96.9 0.0091 2E-07 52.0 10.5 41 218-260 114-155 (156)
425 PF00890 FAD_binding_2: FAD bi 96.9 0.0096 2.1E-07 60.8 12.3 58 205-263 142-204 (417)
426 TIGR02023 BchP-ChlP geranylger 96.9 0.011 2.4E-07 59.7 12.3 98 164-264 2-157 (388)
427 PRK11445 putative oxidoreducta 96.9 0.015 3.4E-07 57.8 13.0 98 164-264 3-159 (351)
428 PRK02106 choline dehydrogenase 96.9 0.0011 2.5E-08 70.3 5.1 61 210-271 207-272 (560)
429 KOG2495 NADH-dehydrogenase (ub 96.9 0.0068 1.5E-07 59.7 9.8 103 161-265 54-173 (491)
430 TIGR02028 ChlP geranylgeranyl 96.9 0.014 3E-07 59.3 12.5 100 164-264 2-162 (398)
431 PRK05257 malate:quinone oxidor 96.8 0.0013 2.8E-08 68.4 4.9 59 204-263 183-247 (494)
432 TIGR00137 gid_trmFO tRNA:m(5)U 96.8 0.0014 3.1E-08 66.1 4.8 34 5-41 1-34 (433)
433 PRK08401 L-aspartate oxidase; 96.8 0.015 3.4E-07 60.2 12.6 97 163-262 2-175 (466)
434 COG1251 NirB NAD(P)H-nitrite r 96.8 0.0062 1.3E-07 64.0 9.2 102 162-267 3-118 (793)
435 PLN02464 glycerol-3-phosphate 96.8 0.019 4.1E-07 61.7 13.4 33 162-194 71-103 (627)
436 KOG0685 Flavin-containing amin 96.8 0.0018 3.8E-08 64.7 5.0 36 4-41 21-56 (498)
437 PRK12844 3-ketosteroid-delta-1 96.7 0.0018 3.8E-08 68.7 5.2 65 203-268 207-276 (557)
438 COG1148 HdrA Heterodisulfide r 96.7 0.004 8.6E-08 62.2 7.1 71 162-232 124-206 (622)
439 PLN02676 polyamine oxidase 96.7 0.0021 4.6E-08 66.9 5.5 36 4-41 26-61 (487)
440 COG0445 GidA Flavin-dependent 96.7 0.0053 1.2E-07 62.4 7.9 96 163-260 5-156 (621)
441 COG3634 AhpF Alkyl hydroperoxi 96.7 0.012 2.6E-07 56.4 9.5 101 161-261 210-324 (520)
442 PRK07804 L-aspartate oxidase; 96.6 0.023 5E-07 60.1 12.8 98 163-260 17-208 (541)
443 KOG1298 Squalene monooxygenase 96.6 0.0033 7.1E-08 61.0 5.7 35 4-41 45-79 (509)
444 KOG2820 FAD-dependent oxidored 96.6 0.025 5.3E-07 54.2 11.3 57 207-263 156-213 (399)
445 PRK12839 hypothetical protein; 96.6 0.0026 5.6E-08 67.6 5.2 66 203-268 213-283 (572)
446 PLN02529 lysine-specific histo 96.6 0.0026 5.7E-08 68.7 5.2 35 4-41 160-194 (738)
447 PLN02985 squalene monooxygenas 96.6 0.031 6.8E-07 58.6 13.0 102 162-265 43-211 (514)
448 TIGR01812 sdhA_frdA_Gneg succi 96.5 0.031 6.6E-07 59.6 12.9 50 211-261 136-190 (566)
449 PRK12845 3-ketosteroid-delta-1 96.5 0.0029 6.3E-08 67.0 5.0 65 203-268 216-285 (564)
450 PLN00093 geranylgeranyl diphos 96.5 0.033 7.1E-07 57.4 12.4 101 163-264 40-201 (450)
451 COG3380 Predicted NAD/FAD-depe 96.5 0.017 3.6E-07 53.7 8.8 100 164-267 3-165 (331)
452 PTZ00306 NADH-dependent fumara 96.5 0.0031 6.8E-08 72.5 5.1 35 4-41 409-443 (1167)
453 PLN02927 antheraxanthin epoxid 96.4 0.032 6.9E-07 59.8 12.0 35 161-195 80-114 (668)
454 TIGR02485 CobZ_N-term precorri 96.4 0.038 8.2E-07 56.8 12.3 64 205-268 124-190 (432)
455 TIGR02462 pyranose_ox pyranose 96.4 0.0037 8E-08 65.3 4.6 56 212-267 222-284 (544)
456 PLN02328 lysine-specific histo 96.4 0.0042 9.1E-08 67.6 5.0 35 4-41 238-272 (808)
457 KOG2614 Kynurenine 3-monooxyge 96.3 0.0044 9.5E-08 61.0 4.6 35 4-41 2-36 (420)
458 PRK08294 phenol 2-monooxygenas 96.3 0.045 9.7E-07 59.0 12.6 104 162-265 32-213 (634)
459 KOG1276 Protoporphyrinogen oxi 96.3 0.0075 1.6E-07 59.4 5.8 38 4-42 11-48 (491)
460 PRK08275 putative oxidoreducta 96.3 0.061 1.3E-06 57.1 13.1 56 207-262 140-200 (554)
461 PRK06175 L-aspartate oxidase; 96.2 0.051 1.1E-06 55.8 12.1 55 206-261 130-188 (433)
462 PRK13369 glycerol-3-phosphate 96.2 0.052 1.1E-06 56.9 12.3 32 163-194 7-38 (502)
463 COG0562 Glf UDP-galactopyranos 96.2 0.0068 1.5E-07 57.6 5.0 35 5-42 2-36 (374)
464 TIGR00551 nadB L-aspartate oxi 96.2 0.044 9.5E-07 57.2 11.6 56 206-262 130-189 (488)
465 PRK09078 sdhA succinate dehydr 96.2 0.059 1.3E-06 57.7 12.7 52 209-260 154-210 (598)
466 PRK06452 sdhA succinate dehydr 96.2 0.05 1.1E-06 57.8 12.1 51 209-260 141-196 (566)
467 TIGR01811 sdhA_Bsu succinate d 96.1 0.06 1.3E-06 57.7 12.4 43 218-260 147-194 (603)
468 PTZ00139 Succinate dehydrogena 96.1 0.071 1.5E-06 57.3 12.9 32 163-194 30-61 (617)
469 PRK07573 sdhA succinate dehydr 96.1 0.063 1.4E-06 57.9 12.5 47 213-260 179-230 (640)
470 PF13450 NAD_binding_8: NAD(P) 96.1 0.011 2.3E-07 43.5 4.6 33 167-199 1-33 (68)
471 PRK12266 glpD glycerol-3-phosp 96.1 0.066 1.4E-06 56.2 12.2 32 163-194 7-38 (508)
472 PRK14106 murD UDP-N-acetylmura 96.1 0.025 5.4E-07 58.5 8.9 82 161-267 4-85 (450)
473 COG2303 BetA Choline dehydroge 96.1 0.0056 1.2E-07 64.5 4.1 38 1-41 4-41 (542)
474 PRK06854 adenylylsulfate reduc 96.1 0.086 1.9E-06 56.6 13.1 32 163-194 12-45 (608)
475 PRK05945 sdhA succinate dehydr 96.0 0.089 1.9E-06 56.1 12.8 53 208-261 139-196 (575)
476 PRK08958 sdhA succinate dehydr 96.0 0.096 2.1E-06 56.0 12.9 51 210-260 149-204 (588)
477 KOG2311 NAD/FAD-utilizing prot 95.9 0.039 8.4E-07 55.2 8.6 32 163-194 29-60 (679)
478 PRK06263 sdhA succinate dehydr 95.8 0.11 2.3E-06 55.1 12.6 54 208-261 138-196 (543)
479 KOG1346 Programmed cell death 95.8 0.012 2.6E-07 57.6 4.7 101 4-127 347-451 (659)
480 PRK07803 sdhA succinate dehydr 95.8 0.11 2.3E-06 56.0 12.3 32 163-194 9-40 (626)
481 PRK07057 sdhA succinate dehydr 95.7 0.15 3.3E-06 54.5 13.3 32 163-194 13-44 (591)
482 PRK12835 3-ketosteroid-delta-1 95.7 0.13 2.7E-06 55.0 12.4 34 163-196 12-45 (584)
483 PF06100 Strep_67kDa_ant: Stre 95.7 0.093 2E-06 53.4 10.6 86 172-261 173-273 (500)
484 PLN00128 Succinate dehydrogena 95.7 0.13 2.9E-06 55.3 12.5 32 163-194 51-82 (635)
485 COG4529 Uncharacterized protei 95.6 0.1 2.3E-06 52.7 10.6 102 163-265 2-167 (474)
486 TIGR01810 betA choline dehydro 95.6 0.01 2.2E-07 62.7 3.8 58 209-267 199-260 (532)
487 PRK08255 salicylyl-CoA 5-hydro 95.6 0.034 7.3E-07 61.3 7.9 33 164-196 2-36 (765)
488 PRK06069 sdhA succinate dehydr 95.6 0.15 3.2E-06 54.4 12.5 31 164-194 7-40 (577)
489 PRK08205 sdhA succinate dehydr 95.5 0.19 4.2E-06 53.6 13.2 57 206-262 142-206 (583)
490 PLN03000 amine oxidase 95.5 0.017 3.7E-07 63.1 5.1 35 4-41 184-218 (881)
491 KOG2755 Oxidoreductase [Genera 95.4 0.018 4E-07 53.1 4.3 94 164-265 1-107 (334)
492 PF02558 ApbA: Ketopantoate re 95.4 0.057 1.2E-06 46.5 7.3 83 165-268 1-85 (151)
493 PLN02785 Protein HOTHEAD 95.4 0.017 3.7E-07 61.5 4.6 34 4-41 55-88 (587)
494 PRK08071 L-aspartate oxidase; 95.4 0.12 2.5E-06 54.4 10.7 31 163-194 4-34 (510)
495 KOG2960 Protein involved in th 95.4 0.004 8.8E-08 55.4 -0.1 35 5-40 77-111 (328)
496 KOG2614 Kynurenine 3-monooxyge 95.3 0.11 2.4E-06 51.3 9.5 34 163-196 3-36 (420)
497 PLN02976 amine oxidase 95.3 0.022 4.7E-07 64.9 5.0 35 4-41 693-727 (1713)
498 PRK14106 murD UDP-N-acetylmura 95.2 0.03 6.4E-07 57.9 5.7 35 3-40 4-38 (450)
499 PRK08641 sdhA succinate dehydr 95.2 0.21 4.5E-06 53.4 12.2 33 162-194 3-35 (589)
500 PRK05335 tRNA (uracil-5-)-meth 95.2 0.026 5.6E-07 56.9 4.9 35 163-197 3-37 (436)
No 1
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=5.9e-54 Score=433.77 Aligned_cols=388 Identities=30% Similarity=0.435 Sum_probs=325.0
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN 82 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (479)
++.+|||||||+||++||..|++++. ..+|+||++++..+|.+|.+++.++........ .....+++.
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~-~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~-----------~~~~~~~~~ 69 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGF-TGELHLFSDERHLPYERPPLSKSMLLEDSPQLQ-----------QVLPANWWQ 69 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCC-CCCEEEeCCCCCCCCCCCCCCHHHHCCCCcccc-----------ccCCHHHHH
Confidence 55789999999999999999999875 567999999999999999888766543221110 123456788
Q ss_pred HcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCC
Q 011700 83 EHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSG 162 (479)
Q Consensus 83 ~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~ 162 (479)
+.+++++.++.|..++++++++.+.+|+++.||+||||||++|+.++. ++...+++++++++.++.++.+.+. .+
T Consensus 70 ~~~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p~---~~~~~~~v~~~~~~~da~~l~~~~~--~~ 144 (396)
T PRK09754 70 ENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLPL---LDALGERCFTLRHAGDAARLREVLQ--PE 144 (396)
T ss_pred HCCCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCCCCCC---CCcCCCCEEecCCHHHHHHHHHHhh--cC
Confidence 899999999899999999999999889899999999999999987765 4445577999999999988887665 47
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEE
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN 242 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~ 242 (479)
++++|||+|++|+|+|..|.+.|.+||++++.++++++.+++++.+.+.+.++++||++++++.+++++. ++. ..+.
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~-~~v~ 221 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD--GEK-VELT 221 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc--CCE-EEEE
Confidence 8999999999999999999999999999999999988777899999999999999999999999999975 232 3577
Q ss_pred eCCCcEEeccEEEEecCCCCChhhhhc-ccccccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHH
Q 011700 243 LRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSA 321 (479)
Q Consensus 243 ~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g 321 (479)
+.+|+++++|.|++++|.+||+.+++. ++.. +++|.||+++||++|+|||+|||+..+.. +|...+.++|..|..||
T Consensus 222 l~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~-~~gi~vd~~~~ts~~~IyA~GD~a~~~~~-~g~~~~~~~~~~A~~qg 299 (396)
T PRK09754 222 LQSGETLQADVVIYGIGISANDQLAREANLDT-ANGIVIDEACRTCDPAIFAGGDVAITRLD-NGALHRCESWENANNQA 299 (396)
T ss_pred ECCCCEEECCEEEECCCCChhhHHHHhcCCCc-CCCEEECCCCccCCCCEEEccceEeeeCC-CCCEEEECcHHHHHHHH
Confidence 889999999999999999999987653 4444 46799999999999999999999987766 67777789999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceE-EEEccCCCCceEEEEccCCEEEEEEEeCCCHHHHHHHH
Q 011700 322 KHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV-VHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIA 400 (479)
Q Consensus 322 ~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~i~G~~~~g~~~~e~~~~~ 400 (479)
++||+||++.. ..|..+|++|+.+|+++++++|....+. +..++.....|..++.++|+|+|+..+|+ ..++..+.
T Consensus 300 ~~aa~ni~g~~--~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~ 376 (396)
T PRK09754 300 QIAAAAMLGLP--LPLLPPPWFWSDQYSDNLQFIGDMRGDDWLCRGNPETQKAIWFNLQNGVLIGAVTLNQ-GREIRPIR 376 (396)
T ss_pred HHHHHHhcCCC--CCCCCCCceEEEeCCccEEEeeCCCCCEEEEecCCCCceEEEEEeeCCEEEEEEEECC-HHHHHHHH
Confidence 99999999865 5678899999999999999999755443 34555555556667778999999999995 56777778
Q ss_pred HHHHcCCCcCcHHHHh
Q 011700 401 KATRLQPVVEDLAELE 416 (479)
Q Consensus 401 ~~i~~~~~~~dl~~~~ 416 (479)
.+|+.+.++. .+.+.
T Consensus 377 ~~~~~~~~~~-~~~~~ 391 (396)
T PRK09754 377 KWIQSGKTFD-AKLLI 391 (396)
T ss_pred HHHHCCCCCC-HHHhc
Confidence 8899888763 44444
No 2
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=2.2e-55 Score=440.63 Aligned_cols=394 Identities=24% Similarity=0.323 Sum_probs=301.6
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcc------cccccCCCCC----CCCC-Cccccc
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPAL------SKGYLLPEAP----ARLP-SFHTCV 69 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l------~~~~~~~~~~----~~~~-~~~~~~ 69 (479)
|+.+||+||||+||||..||.++++.|.+ +.+||+.+ .+...|+ +|.++..... .... .+....
T Consensus 1 ~~~~yDvvVIG~GpaG~~aA~raa~~G~k---valvE~~~--~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~ 75 (454)
T COG1249 1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLK---VALVEKGE--RLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISA 75 (454)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCC---EEEEeecC--CcCceEEeeCccccHHHHHHHHHHHHHhhcccccceec
Confidence 67789999999999999999999999987 99999995 2233333 2222221100 0000 011000
Q ss_pred CC-----------------cccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCC--CcEEEeceEEeecCCCcccccc
Q 011700 70 GA-----------------NEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTAT--GETISYKILIIATGARALKLEE 130 (479)
Q Consensus 70 ~~-----------------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~--g~~~~~d~lviAtG~~~~~~~~ 130 (479)
.. ........+++.++|+++.++..+ .+.++|.+.+ .++++++++|||||++|..||.
T Consensus 76 ~~~~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f---~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~ 152 (454)
T COG1249 76 EVPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARF---VDPHTVEVTGEDKETITADNIIIATGSRPRIPPG 152 (454)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEE---CCCCEEEEcCCCceEEEeCEEEEcCCCCCcCCCC
Confidence 00 011123344566799999985433 3467777766 4789999999999999999998
Q ss_pred cCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHH
Q 011700 131 FGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYY 210 (479)
Q Consensus 131 ~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~ 210 (479)
+++ +...+++.++.....+ .|++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++++.+
T Consensus 153 ~~~---~~~~~~~s~~~l~~~~--------lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~-~D~ei~~~~ 220 (454)
T COG1249 153 PGI---DGARILDSSDALFLLE--------LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG-EDPEISKEL 220 (454)
T ss_pred CCC---CCCeEEechhhccccc--------CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc-CCHHHHHHH
Confidence 444 4344554444222111 4899999999999999999999999999999999999996 899999999
Q ss_pred HHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCc--EEeccEEEEecCCCCChh---hhhccccc-ccCcEEEcCcc
Q 011700 211 EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTS---LFEGQLTL-EKGGIKVTGRL 284 (479)
Q Consensus 211 ~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~Vi~a~G~~p~~~---l~~~~~~~-~~g~i~Vd~~l 284 (479)
.+.|++.|+++++++.+++++..+++ ..+.+++++ ++++|.|++|+||+||++ +.+.++.. ++|+|.||+++
T Consensus 221 ~~~l~~~gv~i~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~ 298 (454)
T COG1249 221 TKQLEKGGVKILLNTKVTAVEKKDDG--VLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQM 298 (454)
T ss_pred HHHHHhCCeEEEccceEEEEEecCCe--EEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCcc
Confidence 99999999999999999999874444 467777776 799999999999999998 34557887 55899999888
Q ss_pred cCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC-CCCCCCCCCCCeEEEeecCcceEeecCCCceEE
Q 011700 285 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME-PDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV 363 (479)
Q Consensus 285 ~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~-~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~ 363 (479)
|||+|||||+|||++.++ +.+.|..||++|++||++ .....+|..+|+ ..+.+.+++.+|+++.++.
T Consensus 299 ~Tnvp~IyA~GDV~~~~~----------Lah~A~~eg~iaa~~i~g~~~~~~d~~~iP~--~ift~Peia~VGlte~ea~ 366 (454)
T COG1249 299 TTNVPGIYAIGDVIGGPM----------LAHVAMAEGRIAAENIAGGKRTPIDYRLIPS--VVFTDPEIASVGLTEEEAK 366 (454)
T ss_pred ccCCCCEEEeeccCCCcc----------cHhHHHHHHHHHHHHHhCCCCCcCcccCCCE--EEECCCcceeeeCCHHHHH
Confidence 889999999999998775 366789999999999997 333357888997 4456778899999876653
Q ss_pred EEc--------cC----------CCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCc
Q 011700 364 HYG--------NF----------SGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGF 422 (479)
Q Consensus 364 ~~~--------~~----------~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~ 422 (479)
..+ .. ....|.++.+ ++++|||+|++|++++|+ +.++.||+.+++.+|+..++..||++
T Consensus 367 ~~g~~~~~~~~~f~~~~ra~~~~~~~G~~Klv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i~~HPT~ 446 (454)
T COG1249 367 EAGIDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTL 446 (454)
T ss_pred hcCCceEEEEeecccchhHHhccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCCCCCCCh
Confidence 211 00 0135666554 679999999999999998 55899999999999999999999999
Q ss_pred ccccCC
Q 011700 423 ALAVSQ 428 (479)
Q Consensus 423 a~~~~~ 428 (479)
+|.+.+
T Consensus 447 sE~~~~ 452 (454)
T COG1249 447 SEALKE 452 (454)
T ss_pred HHHHHH
Confidence 987754
No 3
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=100.00 E-value=1.4e-53 Score=412.25 Aligned_cols=398 Identities=49% Similarity=0.827 Sum_probs=357.7
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH 84 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (479)
..++|||+|++|..|+.+++..+. ...++++.++.++||.++.+++.+. +.+.+...+.++||+++
T Consensus 75 r~fvivGgG~~g~vaie~~r~~g~-~~ri~l~~~~~~~pydr~~Ls~~~~-------------~~~~~~a~r~~e~Yke~ 140 (478)
T KOG1336|consen 75 RHFVIVGGGPGGAVAIETLRQVGF-TERIALVKREYLLPYDRARLSKFLL-------------TVGEGLAKRTPEFYKEK 140 (478)
T ss_pred ceEEEEcCCchhhhhHhhHHhhCC-CcceEEEeccccCcccchhccccee-------------eccccccccChhhHhhc
Confidence 579999999999999999998876 4678999989889998877765433 33445557788899999
Q ss_pred CcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCC
Q 011700 85 GIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGN 164 (479)
Q Consensus 85 gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~ 164 (479)
++++++++.|+.+|...+++...+|+.+.|++|+||||+.++.|++ ||.+.+++++++++++++.+...+.. .++
T Consensus 141 gIe~~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~~---pG~~~~nv~~ireieda~~l~~~~~~--~~~ 215 (478)
T KOG1336|consen 141 GIELILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAKTLDI---PGVELKNVFYLREIEDANRLVAAIQL--GGK 215 (478)
T ss_pred CceEEEcceeEEeeccccEEEeCCCceeecceEEEeecCccccCCC---CCccccceeeeccHHHHHHHHHHhcc--Cce
Confidence 9999999999999999999999999999999999999999999998 77778999999999999998887764 678
Q ss_pred EEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC
Q 011700 165 AVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 244 (479)
Q Consensus 165 vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~ 244 (479)
++++|+|++|+|++..|...+.+||++++.+.++++.|.+.+++.++++++++||++++++.+.+++.+.+|++..|.+.
T Consensus 216 vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~ 295 (478)
T KOG1336|consen 216 VVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLK 295 (478)
T ss_pred EEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred CCcEEeccEEEEecCCCCChhhhhcc-cccccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHH
Q 011700 245 DGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKH 323 (479)
Q Consensus 245 ~g~~i~~D~Vi~a~G~~p~~~l~~~~-~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~ 323 (479)
|++++++|.|++.+|.+|++.+++.+ ....+|+|.||+++||++|||||+|||+.+|...++..++++|+..|+.+|+.
T Consensus 296 dg~~l~adlvv~GiG~~p~t~~~~~g~~~~~~G~i~V~~~f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~ 375 (478)
T KOG1336|consen 296 DGKTLEADLVVVGIGIKPNTSFLEKGILLDSKGGIKVDEFFQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQ 375 (478)
T ss_pred cCCEeccCeEEEeeccccccccccccceecccCCEeehhceeeccCCcccccceeecccccccccccchHHHHHHHHHHh
Confidence 99999999999999999999998854 33478999999999999999999999999998888777779999999999998
Q ss_pred HHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEEEEccCCCCceEEEEccCCEEEEEEEeCCCHHHHHHHHHHH
Q 011700 324 AVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKAT 403 (479)
Q Consensus 324 aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~g~~~~e~~~~~~~i 403 (479)
+...+..... ..++++|+||+.+|++.|.+.|...++.+.+|+.+...|..||++ ++.+++..-+...++.+.++..+
T Consensus 376 av~ai~~~~~-~~~~~lPyf~t~~f~~~~~~~G~g~~~~v~~G~~e~~~f~ay~~k-~~~v~a~~~~g~~~~~~~~a~l~ 453 (478)
T KOG1336|consen 376 AVKAIKMAPQ-DAYDYLPYFYTRFFSLSWRFAGDGVGDVVLFGDLEPGSFGAYWIK-GDKVGAVAEGGRDEEVSQFAKLA 453 (478)
T ss_pred hhhhhhccCc-ccccccchHHHHHhhhhccccCcCccceeeecccccccceeeEee-ccEEEEEeccCCChHHHHHHHHH
Confidence 8777765443 238899999999999999999999999999999887789999999 99999999998888899999999
Q ss_pred HcCCCcCcHHHHhhcCCCcc
Q 011700 404 RLQPVVEDLAELETQGLGFA 423 (479)
Q Consensus 404 ~~~~~~~dl~~~~~~~~~~a 423 (479)
+.++.+..+..+...+..++
T Consensus 454 ~~~~~v~~~~~~~~~~~~~~ 473 (478)
T KOG1336|consen 454 RQGPEVTSLKLLSKSGDSFW 473 (478)
T ss_pred hcCCcchhhhhccccchhhH
Confidence 99999987776665555444
No 4
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=3.8e-52 Score=425.23 Aligned_cols=396 Identities=19% Similarity=0.294 Sum_probs=306.0
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCC-HhHHHH
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLT-PKWYNE 83 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 83 (479)
++|||||||+||++||.+|++++ +..+|+|||+++.+.|.++.++.... .. .+.. ....... ..++++
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~-~~~~I~li~~~~~~~~~~~~lp~~~~--~~---~~~~-----~~~~~~~~~~~~~~ 70 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLD-KESDIIIFEKDRDMSFANCALPYYIG--EV---VEDR-----KYALAYTPEKFYDR 70 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhC-CCCCEEEEECCCCcccccCCcchhhc--Cc---cCCH-----HHcccCCHHHHHHh
Confidence 48999999999999999998864 45779999999987777544432110 00 0000 0001112 344567
Q ss_pred cCcEEEeCceEEEEECCCcEEEeCCC---c--EEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHh
Q 011700 84 HGIELVLGTRVKSADVRRKTLVTATG---E--TISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMK 158 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~~~g---~--~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~ 158 (479)
.+++++.+++|..||+++++|.+.++ + +++||+||||||++|+.|+. +.+++++++++.++..+.+.+.
T Consensus 71 ~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~------~~~~~~~~~~~~~~~~l~~~l~ 144 (438)
T PRK13512 71 KQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGF------ESDITFTLRNLEDTDAIDQFIK 144 (438)
T ss_pred CCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCC------CCCCeEEecCHHHHHHHHHHHh
Confidence 89999998899999999999887543 2 47899999999999976653 3367888999999988887776
Q ss_pred cCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcE
Q 011700 159 SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV 238 (479)
Q Consensus 159 ~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v 238 (479)
...+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+.+.+.|+++||++++++++++++. +
T Consensus 145 ~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~-~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~--- 218 (438)
T PRK13512 145 ANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELDKREIPYRLNEEIDAING--N--- 218 (438)
T ss_pred hcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh-cCHHHHHHHHHHHHhcCCEEEECCeEEEEeC--C---
Confidence 656899999999999999999999999999999999988875 8999999999999999999999999999963 1
Q ss_pred EEEEeCCCcEEeccEEEEecCCCCChhhhhc-cccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHH
Q 011700 239 VAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS 316 (479)
Q Consensus 239 ~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~ 316 (479)
.+.+.+|+++++|.|++++|++||+++++. ++.. ++|+|.||+++||++|+|||+|||+..+....+.+...+.+..
T Consensus 219 -~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~ 297 (438)
T PRK13512 219 -EVTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWG 297 (438)
T ss_pred -EEEECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCcccCCCCEEEeeeeEEeeeccCCCceecccchH
Confidence 466778889999999999999999987764 4555 5688999999999999999999999754433343334466777
Q ss_pred HHHHHHHHHHHHcCCCCCCCC-CCCCeEEEeecCcceEeecCCCceEEEEc-------c--C------CCCceEEEEc--
Q 011700 317 ARKSAKHAVAAIMEPDKTDKF-DYLPFFYSRVFTLSWQFYGDNVGEVVHYG-------N--F------SGTTFGAYWV-- 378 (479)
Q Consensus 317 A~~~g~~aa~~i~~~~~~~~~-~~~p~~~~~~~~~~~~~~G~~~~~~~~~~-------~--~------~~~~~~~~~~-- 378 (479)
|.+||+++++||++... ..+ ++.+..+..+++++++.+|+++.++...+ . . ....|.++.+
T Consensus 298 A~~~a~~~a~ni~g~~~-~~~~~~~~~~~~~~~~~~ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~ 376 (438)
T PRK13512 298 AHRAASIVAEQIAGNDT-IEFKGFLGNNIVKFFDYTFASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRVYYDT 376 (438)
T ss_pred HHHHHHHHHHHhcCCCc-cccCCcccceEEEEcCceEEeecCCHHHHccCCcEEEEEecCCcCCCcCCCceEEEEEEEEC
Confidence 89999999999997532 223 33444457788999999999886553221 0 0 0133555544
Q ss_pred cCCEEEEEEEeCCC-HHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCC
Q 011700 379 NKGRLVGSFLEGGT-KEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQ 428 (479)
Q Consensus 379 ~~~~i~G~~~~g~~-~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~ 428 (479)
++++|||+|++|++ ++|+ +.++.+|+.++|++||.++. +.|+|+|++
T Consensus 377 ~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~---~~~~P~~~~ 425 (438)
T PRK13512 377 SNRKILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFE---VAYAPPYSH 425 (438)
T ss_pred CCCeEEEEEEEccccHHHHHHHHHHHHHcCCcHHHHhhcc---cccCCCCCc
Confidence 58999999999986 7776 66899999999999998873 355555543
No 5
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-54 Score=398.14 Aligned_cols=416 Identities=19% Similarity=0.232 Sum_probs=301.6
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-C-------CCCcccccccCC-----CCCCCCCCccccc
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP-Y-------ERPALSKGYLLP-----EAPARLPSFHTCV 69 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~-~-------~~~~l~~~~~~~-----~~~~~~~~~~~~~ 69 (479)
.+||++|||||.+||+||.+++..|.++..+..+.+.|... | +-.++++.++.. +..++-..+.+..
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW~~ 97 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGWNV 97 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 36999999999999999999999999854455555665421 1 112223322221 1111111111111
Q ss_pred CCc-ccCCCHhH------------------HHHcCcEEEeCceEEEEECCCcEEEeCCC--cEEEeceEEeecCCCcccc
Q 011700 70 GAN-EERLTPKW------------------YNEHGIELVLGTRVKSADVRRKTLVTATG--ETISYKILIIATGARALKL 128 (479)
Q Consensus 70 ~~~-~~~~~~~~------------------~~~~gv~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~~~~~ 128 (479)
.+. ....+..+ +++..|+++.. --.-+++..-..+..++ +.++++.++||||.+|+.|
T Consensus 98 ~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~Ns-ygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RPrYp 176 (503)
T KOG4716|consen 98 DEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINS-YGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPRYP 176 (503)
T ss_pred ccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeec-ceeecccceEEEecCCCceEEeecceEEEEecCCCCCC
Confidence 110 11111111 11222222221 11122222222222333 4689999999999999999
Q ss_pred cccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHH
Q 011700 129 EEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIAS 208 (479)
Q Consensus 129 ~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~ 208 (479)
.+ ||. .+...+.+++....+ .|.+.+|||+||+++|||.+|+.+|.+||++.|+ ++-+.||+++++
T Consensus 177 ~I---pG~-~Ey~ITSDDlFsl~~--------~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRS--I~LrGFDqdmae 242 (503)
T KOG4716|consen 177 DI---PGA-KEYGITSDDLFSLPY--------EPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRS--ILLRGFDQDMAE 242 (503)
T ss_pred CC---CCc-eeeeecccccccccC--------CCCceEEEccceeeeehhhhHhhcCCCcEEEEEE--eecccccHHHHH
Confidence 88 663 233445555544332 4788999999999999999999999999999998 555569999999
Q ss_pred HHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC---C--cEEeccEEEEecCCCCChhhh---hccccc--ccCcE
Q 011700 209 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---G--NRLPTDMVVVGIGIRPNTSLF---EGQLTL--EKGGI 278 (479)
Q Consensus 209 ~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~---g--~~i~~D~Vi~a~G~~p~~~l~---~~~~~~--~~g~i 278 (479)
.+.+.|+++||+|...+.+.+++..++++. .|...+ + -+-++|.|+||+|+.++++-+ ..++.. ..|.|
T Consensus 243 ~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI 321 (503)
T KOG4716|consen 243 LVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKI 321 (503)
T ss_pred HHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccCCcc
Confidence 999999999999999999999988677764 233322 2 245799999999999998743 345665 56889
Q ss_pred EEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCC-CCCCCCCeEEEeecCcceEeecC
Q 011700 279 KVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSWQFYGD 357 (479)
Q Consensus 279 ~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~p~~~~~~~~~~~~~~G~ 357 (479)
.||+.-+||+|+|||+||+..... ++.+.|++.|+..|+++++.... .+|+.+|+ +.|.++++.++|+
T Consensus 322 ~v~~~e~t~vp~vyAvGDIl~~kp---------ELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~T--TVFTPLEy~c~Gl 390 (503)
T KOG4716|consen 322 PVDDEEATNVPYVYAVGDILEDKP---------ELTPVAIQSGRLLARRLFAGSTQLMDYDDVAT--TVFTPLEYGCVGL 390 (503)
T ss_pred ccChHHhcCCCceEEecceecCCc---------ccchhhhhhchHHHHHHhcCcceeeeccCCce--eeecchhccccCC
Confidence 999999999999999999997643 67788999999999999987654 68888997 6677899999999
Q ss_pred CCceEEE-EccCC--------------------CCceEEEEc---cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcH
Q 011700 358 NVGEVVH-YGNFS--------------------GTTFGAYWV---NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDL 412 (479)
Q Consensus 358 ~~~~~~~-~~~~~--------------------~~~~~~~~~---~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl 412 (479)
++++++. +|..+ +..|.+... ++.||+|.|++||+|+|+ +.++.|++.|+|+.||
T Consensus 391 sEE~Ai~k~g~dnievfH~~f~P~E~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPnAgEV~QGfaaAlk~glt~~~l 470 (503)
T KOG4716|consen 391 SEEDAIEKYGEDNIEVFHSYFKPLEYTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPNAGEVIQGFAAALKCGLTKKDL 470 (503)
T ss_pred CHHHHHHHhCcccEEEeeccccceEEEcccccCCceEEEEeecccCCceEEEEEEecCchhHHHHHHHHHHHhcccHHHH
Confidence 9987642 33221 122333332 688999999999999998 7799999999999999
Q ss_pred HHHhhcCCCcccccCCCCCCCCCCCCCcccccc
Q 011700 413 AELETQGLGFALAVSQKPLPSTPVDGKTVPGLV 445 (479)
Q Consensus 413 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 445 (479)
.+++++||+.|+.|+++.++|+||.|+++.+||
T Consensus 471 ~ntigIHPt~aE~Ft~L~itKrsG~d~~~as~C 503 (503)
T KOG4716|consen 471 DNTIGIHPTTAEEFTTLSITKRSGLDPTQASCC 503 (503)
T ss_pred hhcccccccchhheeEEEEEecCCCCcccccCC
Confidence 999999999999999999999999999988776
No 6
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=3.8e-51 Score=420.33 Aligned_cols=403 Identities=22% Similarity=0.269 Sum_probs=312.9
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHcC
Q 011700 6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEHG 85 (479)
Q Consensus 6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 85 (479)
+|||||||+||+++|..|++++. ..+|+|||+++...|..+.+.. +.... ...+ ........+.+++.+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~-~~~Vtli~~~~~~~~~~~~~~~-~~~~~--~~~~-------~~~~~~~~~~~~~~g 70 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNK-ELEITVYEKTDIVSFGACGLPY-FVGGF--FDDP-------NTMIARTPEEFIKSG 70 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCC-CCcEEEEECCCcceeecCCCce-Eeccc--cCCH-------HHhhcCCHHHHHHCC
Confidence 79999999999999999998753 4579999999876665333321 11000 0000 011234556788889
Q ss_pred cEEEeCceEEEEECCCcEEEeCC---CcEEE--eceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcC
Q 011700 86 IELVLGTRVKSADVRRKTLVTAT---GETIS--YKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSC 160 (479)
Q Consensus 86 v~~~~~~~v~~i~~~~~~v~~~~---g~~~~--~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~ 160 (479)
++++.+++|++++++++.+.+.+ +.++. ||+||||||++|..|++ +|.+.+++++++++.++.++++.+.+.
T Consensus 71 v~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i---~g~~~~~v~~~~~~~~~~~l~~~l~~~ 147 (444)
T PRK09564 71 IDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPI---KNINLENVYTLKSMEDGLALKELLKDE 147 (444)
T ss_pred CeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCC---CCcCCCCEEEECCHHHHHHHHHHHhhc
Confidence 99998889999999999888754 55666 99999999999988876 666667899999988888888877665
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 240 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~ 240 (479)
.+++++|||+|++|+|+|..|.+.|.+|+++++.+++++..+++++.+.+.+.++++||++++++++.+++. ++.+..
T Consensus 148 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~ 225 (444)
T PRK09564 148 EIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEG 225 (444)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEE
Confidence 679999999999999999999999999999999998887668999999999999999999999999999964 344444
Q ss_pred EEeCCCcEEeccEEEEecCCCCChhhhhc-cccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHH
Q 011700 241 VNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSAR 318 (479)
Q Consensus 241 v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~ 318 (479)
+.+. +.++++|.+++|+|++|++++++. ++.. ++|+|.||+++||++|||||+|||+..+....+.....+++..|.
T Consensus 226 v~~~-~~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~ 304 (444)
T PRK09564 226 VVTD-KGEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTAN 304 (444)
T ss_pred EEeC-CCEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHH
Confidence 5444 457999999999999999987764 4665 568899999999999999999999997665555555567888999
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEEEEc---------cCC--------CCceEEEEc--c
Q 011700 319 KSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG---------NFS--------GTTFGAYWV--N 379 (479)
Q Consensus 319 ~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~---------~~~--------~~~~~~~~~--~ 379 (479)
+||+++|+||++.....+. ..+.....+++++++++|++++++...| ... ...|.++.. +
T Consensus 305 ~qg~~~a~ni~g~~~~~~~-~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~klv~~~~ 383 (444)
T PRK09564 305 KLGRMVGENLAGRHVSFKG-TLGSACIKVLDLEAARTGLTEEEAKKLGIDYKTVFIKDKNHTNYYPGQEDLYVKLIYEAD 383 (444)
T ss_pred HHHHHHHHHhcCCCCCCCC-cccceEEEECCEEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEEECC
Confidence 9999999999986432221 2333334578899999999876542111 111 134555554 6
Q ss_pred CCEEEEEEEeCCC-HHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCCC
Q 011700 380 KGRLVGSFLEGGT-KEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQK 429 (479)
Q Consensus 380 ~~~i~G~~~~g~~-~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~~ 429 (479)
+++|+|+|++|+. +.++ +.++.||++++|++|+.++. +.|.|+|++.
T Consensus 384 ~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~~~~---~~~~p~~~~~ 432 (444)
T PRK09564 384 TKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELGMMD---FCYAPPFART 432 (444)
T ss_pred CCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHhhcc---cccCCCCCCC
Confidence 8999999999986 7676 66899999999999998877 4555555543
No 7
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=2.7e-51 Score=422.71 Aligned_cols=398 Identities=19% Similarity=0.244 Sum_probs=291.7
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCCcc-cccccCCC------CCCCCCCcc-----
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PYERPAL-SKGYLLPE------APARLPSFH----- 66 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~~l-~~~~~~~~------~~~~~~~~~----- 66 (479)
||++||||||||||||++||..|+++|++ |+|||+.+.. +.++.|. +|.++... .....+++.
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~---v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~ 78 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMK---VALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPV 78 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCe---EEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccC
Confidence 77889999999999999999999999987 9999987431 1122222 11111000 000000000
Q ss_pred ---c--ccC------CcccCCCHhHHHHc-CcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCC
Q 011700 67 ---T--CVG------ANEERLTPKWYNEH-GIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLS 134 (479)
Q Consensus 67 ---~--~~~------~~~~~~~~~~~~~~-gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~ 134 (479)
. ... .........++++. |++++.++.+. .+.+++.+ +++++.||+||||||++|+.|++ +
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~---~~~~~v~v-~~~~~~~d~lViATGs~p~~p~i---~ 151 (463)
T PRK06370 79 SVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARF---ESPNTVRV-GGETLRAKRIFINTGARAAIPPI---P 151 (463)
T ss_pred ccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEE---ccCCEEEE-CcEEEEeCEEEEcCCCCCCCCCC---C
Confidence 0 000 00011233455666 99999986543 45677776 45689999999999999998887 6
Q ss_pred CCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHH
Q 011700 135 GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYY 214 (479)
Q Consensus 135 g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l 214 (479)
|.+...+++.++..+.. ..+++++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++.+.+.+.|
T Consensus 152 G~~~~~~~~~~~~~~~~--------~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~~~~~~~~l~~~l 222 (463)
T PRK06370 152 GLDEVGYLTNETIFSLD--------ELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-EDEDVAAAVREIL 222 (463)
T ss_pred CCCcCceEcchHhhCcc--------ccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-cCHHHHHHHHHHH
Confidence 65545555443332211 14799999999999999999999999999999999999886 7999999999999
Q ss_pred HhCCcEEEcCCceEEEEEcCCCcEEEEEeC-CCcEEeccEEEEecCCCCChh-h-h-hccccc-ccCcEEEcCcccCCCC
Q 011700 215 KSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DGNRLPTDMVVVGIGIRPNTS-L-F-EGQLTL-EKGGIKVTGRLQSSNS 289 (479)
Q Consensus 215 ~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~-~g~~i~~D~Vi~a~G~~p~~~-l-~-~~~~~~-~~g~i~Vd~~l~t~~~ 289 (479)
+++||++++++.+.+++..+++....+... +++++++|.|++|+|++|+++ + + +.++.. ++|+|.||++|||++|
T Consensus 223 ~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~~ 302 (463)
T PRK06370 223 EREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTNP 302 (463)
T ss_pred HhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcCCCC
Confidence 999999999999999987433322223333 345799999999999999998 3 2 334555 5688999999999999
Q ss_pred CeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCC-CCCCCCCCCCeEEEeecCcceEeecCCCceEEEEc--
Q 011700 290 SVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP-DKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-- 366 (479)
Q Consensus 290 ~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~-~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~-- 366 (479)
+|||+|||+..+ .....|..||+.|++||++. ....++..+|+ ..+++.+++++|+++.++...|
T Consensus 303 ~IyAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~--~~~~~p~ia~vG~te~~a~~~g~~ 370 (463)
T PRK06370 303 GIYAAGDCNGRG----------AFTHTAYNDARIVAANLLDGGRRKVSDRIVPY--ATYTDPPLARVGMTEAEARKSGRR 370 (463)
T ss_pred CEEEeeecCCCc----------ccHHHHHHHHHHHHHHHhCCCCCCcccccCCe--EEEcCCCcEeeeCCHHHHHHcCCC
Confidence 999999998764 34668999999999999975 32234555665 4477889999999876442111
Q ss_pred ---------c-------CCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccC
Q 011700 367 ---------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVS 427 (479)
Q Consensus 367 ---------~-------~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~ 427 (479)
+ .....|.++.+ ++++|||+|++|+++.|+ +.++.||+.++|++||.+++.+||+++|.+.
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~ 450 (463)
T PRK06370 371 VLVGTRPMTRVGRAVEKGETQGFMKVVVDADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAIHIHPTVSELIP 450 (463)
T ss_pred eEEEEEecCcchhHHhcCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCChHHHHH
Confidence 1 01134555554 589999999999999998 5689999999999999999999999988765
Q ss_pred CC
Q 011700 428 QK 429 (479)
Q Consensus 428 ~~ 429 (479)
+.
T Consensus 451 ~a 452 (463)
T PRK06370 451 TL 452 (463)
T ss_pred HH
Confidence 43
No 8
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=5.2e-51 Score=420.03 Aligned_cols=397 Identities=18% Similarity=0.212 Sum_probs=286.4
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC---CCCCCccc-ccccCCCC----CCCCCCcccccCC-
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA---PYERPALS-KGYLLPEA----PARLPSFHTCVGA- 71 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~---~~~~~~l~-~~~~~~~~----~~~~~~~~~~~~~- 71 (479)
|+.+||++||||||||++||..|+++|.+ |+|||+.+.. +.++.|++ +.++.... ......+......
T Consensus 1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~---V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~ 77 (471)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLE---TVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEP 77 (471)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCC
Confidence 78889999999999999999999999987 9999986421 22222222 21111000 0000000000000
Q ss_pred ----------------cccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCC--cEEEeceEEeecCCCcccccccCC
Q 011700 72 ----------------NEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATG--ETISYKILIIATGARALKLEEFGL 133 (479)
Q Consensus 72 ----------------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~~~~~~~~g~ 133 (479)
.........+++.||+++.++ +..++.....+...+| .+++||+||||||++|+.+|. +
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~-a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~--~ 154 (471)
T PRK06467 78 KIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGL-GKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPF--I 154 (471)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCC--C
Confidence 000112234567799999984 4444432223333455 479999999999999975443 2
Q ss_pred CCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHH
Q 011700 134 SGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEY 213 (479)
Q Consensus 134 ~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~ 213 (479)
++ +.+++++. .++..+ .. .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++++.+.+.
T Consensus 155 ~~-~~~~v~~~---~~~~~~----~~-~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~-~d~~~~~~~~~~ 224 (471)
T PRK06467 155 PH-DDPRIWDS---TDALEL----KE-VPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA-ADKDIVKVFTKR 224 (471)
T ss_pred CC-CCCcEECh---HHhhcc----cc-CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc-CCHHHHHHHHHH
Confidence 33 23344432 222222 11 4799999999999999999999999999999999999986 899999999999
Q ss_pred HHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC--C--cEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcCccc
Q 011700 214 YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD--G--NRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRLQ 285 (479)
Q Consensus 214 l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~--g--~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~l~ 285 (479)
|+++ |++++++.+++++..+++ + .+.+.+ + +++++|.|++++|++||++++ ..++.. ++|+|.||+++|
T Consensus 225 l~~~-v~i~~~~~v~~i~~~~~~-~-~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~ 301 (471)
T PRK06467 225 IKKQ-FNIMLETKVTAVEAKEDG-I-YVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCR 301 (471)
T ss_pred Hhhc-eEEEcCCEEEEEEEcCCE-E-EEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcc
Confidence 9988 999999999999863333 2 344433 2 469999999999999999854 334665 578899999999
Q ss_pred CCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEEEE
Q 011700 286 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHY 365 (479)
Q Consensus 286 t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~ 365 (479)
|++|+|||+|||++.+ ..+..|.+||+.|+.+|++.....++..+|+. .+++++++++|+++.++...
T Consensus 302 t~~p~VyAiGDv~~~~----------~la~~A~~eG~~aa~~i~g~~~~~~~~~~p~~--~~~~p~ia~vGlte~ea~~~ 369 (471)
T PRK06467 302 TNVPHIFAIGDIVGQP----------MLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSI--AYTEPEVAWVGLTEKEAKEE 369 (471)
T ss_pred cCCCCEEEehhhcCCc----------ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeE--EECCCceeEEECCHHHHHhc
Confidence 9999999999999754 35778999999999999986544566678864 47889999999987654321
Q ss_pred c-----------cC-------CCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCccc
Q 011700 366 G-----------NF-------SGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFAL 424 (479)
Q Consensus 366 ~-----------~~-------~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~ 424 (479)
| +. ....|.++.+ ++++|||+|++|+++.|+ +.++.||+.++|++||.++...||++++
T Consensus 370 g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~~~~~~hPt~~e 449 (471)
T PRK06467 370 GIEYETATFPWAASGRAIASDCADGMTKLIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPTLHE 449 (471)
T ss_pred CCCeEEEEEecCcchhhhhCCCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHH
Confidence 1 10 0134555544 579999999999999998 5689999999999999999888888887
Q ss_pred ccCC
Q 011700 425 AVSQ 428 (479)
Q Consensus 425 ~~~~ 428 (479)
.+..
T Consensus 450 ~~~~ 453 (471)
T PRK06467 450 SVGL 453 (471)
T ss_pred HHHH
Confidence 6644
No 9
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=8.8e-51 Score=416.02 Aligned_cols=392 Identities=17% Similarity=0.219 Sum_probs=287.1
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCCcc-cccccCCC----CCCCCCCcccccC--C--
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PYERPAL-SKGYLLPE----APARLPSFHTCVG--A-- 71 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~~l-~~~~~~~~----~~~~~~~~~~~~~--~-- 71 (479)
++|||+||||||||++||..|+++|++ |+|||++... +.++.|+ +|.++... .....+.+..... .
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~---V~liE~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 77 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAK---ALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTF 77 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCc---EEEecccccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCcc
Confidence 469999999999999999999999987 9999986431 1112222 11111000 0000011100000 0
Q ss_pred --------------cccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccc-cccCCCCC
Q 011700 72 --------------NEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKL-EEFGLSGS 136 (479)
Q Consensus 72 --------------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~-~~~g~~g~ 136 (479)
.........+++.||+++.++.+. .+.+++.+ +++.++||+||||||++|+.| ++ ||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~---~~~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~i---~g~ 150 (450)
T TIGR01421 78 NWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARF---TKDGTVEV-NGRDYTAPHILIATGGKPSFPENI---PGA 150 (450)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCC---CCC
Confidence 000112334566799999986543 34566766 566799999999999999887 55 554
Q ss_pred CCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHh
Q 011700 137 DAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS 216 (479)
Q Consensus 137 ~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~ 216 (479)
+ ..+ +.++... +.. .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++++.+.+.|++
T Consensus 151 ~--~~~---~~~~~~~----~~~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~-~d~~~~~~~~~~l~~ 219 (450)
T TIGR01421 151 E--LGT---DSDGFFA----LEE-LPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS-FDSMISETITEEYEK 219 (450)
T ss_pred c--eeE---cHHHhhC----ccc-cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc-cCHHHHHHHHHHHHH
Confidence 3 111 1122111 111 4799999999999999999999999999999999999875 899999999999999
Q ss_pred CCcEEEcCCceEEEEEcCCCcEEEEEeCCC-cEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcCcccCCCCCe
Q 011700 217 KGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRLQSSNSSV 291 (479)
Q Consensus 217 ~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g-~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~l~t~~~~I 291 (479)
+||++++++.+++++.+.++. ..+.+.++ +++++|.|++++|++||++++ ..++.. ++|+|.||+++||++|+|
T Consensus 220 ~gI~i~~~~~v~~i~~~~~~~-~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~I 298 (450)
T TIGR01421 220 EGINVHKLSKPVKVEKTVEGK-LVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGI 298 (450)
T ss_pred cCCEEEcCCEEEEEEEeCCce-EEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCE
Confidence 999999999999998633332 35667777 579999999999999999853 345655 568899999999999999
Q ss_pred EEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCC--CCCCCCCCeEEEeecCcceEeecCCCceEEEE-cc-
Q 011700 292 YAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK--TDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHY-GN- 367 (479)
Q Consensus 292 yA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~--~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~-~~- 367 (479)
||+|||++.+ ..+..|.+||+.+++||++... ..++..+|. ..+++.+++++|+++.++... +.
T Consensus 299 yAiGD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~--~~f~~p~ia~vGlte~~a~~~~g~~ 366 (450)
T TIGR01421 299 YALGDVVGKV----------ELTPVAIAAGRKLSERLFNGKTDDKLDYNNVPT--VVFSHPPIGTIGLTEKEAIEKYGKE 366 (450)
T ss_pred EEEEecCCCc----------ccHHHHHHHHHHHHHHHhcCCCCCccCcccCCe--EEeCCCceEEEeCCHHHHHhhcCCC
Confidence 9999999755 3467899999999999996432 235667775 446677899999988654321 10
Q ss_pred ------------------CCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCccccc
Q 011700 368 ------------------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAV 426 (479)
Q Consensus 368 ------------------~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~ 426 (479)
.....|.++.+ ++++|||+|++|+++.|+ +.++.||++++|++||.+++..||+++|.+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~ 446 (450)
T TIGR01421 367 NIKVYNSSFTPMYYAMTSEKQKCRMKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSSEEL 446 (450)
T ss_pred CEEEEEEEcChhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHH
Confidence 01134555444 689999999999999998 568999999999999999999999998866
Q ss_pred CC
Q 011700 427 SQ 428 (479)
Q Consensus 427 ~~ 428 (479)
.+
T Consensus 447 ~~ 448 (450)
T TIGR01421 447 VT 448 (450)
T ss_pred hh
Confidence 54
No 10
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=1.7e-50 Score=415.49 Aligned_cols=394 Identities=19% Similarity=0.222 Sum_probs=290.1
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCCcc-cccccCCCC----CC----------CCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PYERPAL-SKGYLLPEA----PA----------RLP 63 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~~l-~~~~~~~~~----~~----------~~~ 63 (479)
|+.+|||+||||||||++||..|+++|++ |+|||++... +.+..|+ ++.++.... .. ..+
T Consensus 1 m~~~~DvvVIG~GpaG~~aA~~~a~~G~~---V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~ 77 (450)
T PRK06116 1 MTKDYDLIVIGGGSGGIASANRAAMYGAK---VALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTEN 77 (450)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCC
Confidence 77789999999999999999999999987 9999987321 1222222 111111000 00 000
Q ss_pred Ccccc--cC------CcccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCC
Q 011700 64 SFHTC--VG------ANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSG 135 (479)
Q Consensus 64 ~~~~~--~~------~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g 135 (479)
.+.+. .. ........+.+.+.+++++.+ ++..++ .+++.+ ++++++||+||||||++|+.|++ +|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~v~--~~~v~~-~g~~~~~d~lViATGs~p~~p~i---~g 150 (450)
T PRK06116 78 KFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEG-FARFVD--AHTVEV-NGERYTADHILIATGGRPSIPDI---PG 150 (450)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEcc--CCEEEE-CCEEEEeCEEEEecCCCCCCCCC---CC
Confidence 00000 00 000011223455689999998 566555 467777 67789999999999999988876 55
Q ss_pred CCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHH
Q 011700 136 SDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYK 215 (479)
Q Consensus 136 ~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~ 215 (479)
.+ .+++..+ ... +.. .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.|+
T Consensus 151 ~~--~~~~~~~---~~~----~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~L~ 219 (450)
T PRK06116 151 AE--YGITSDG---FFA----LEE-LPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRG-FDPDIRETLVEEME 219 (450)
T ss_pred cc--eeEchhH---hhC----ccc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccc-cCHHHHHHHHHHHH
Confidence 42 2322222 111 111 4789999999999999999999999999999999988875 89999999999999
Q ss_pred hCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhh---hhccccc-ccCcEEEcCcccCCCCCe
Q 011700 216 SKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL---FEGQLTL-EKGGIKVTGRLQSSNSSV 291 (479)
Q Consensus 216 ~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l---~~~~~~~-~~g~i~Vd~~l~t~~~~I 291 (479)
++||+++++++|.+++.++++.+ .+.+.+|+++++|.|++++|++|+++. ...++.. ++|+|.||+++||++|+|
T Consensus 220 ~~GV~i~~~~~V~~i~~~~~g~~-~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~I 298 (450)
T PRK06116 220 KKGIRLHTNAVPKAVEKNADGSL-TLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGI 298 (450)
T ss_pred HCCcEEECCCEEEEEEEcCCceE-EEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCE
Confidence 99999999999999987444433 467788889999999999999999984 2345655 578899999999999999
Q ss_pred EEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCC--CCCCCCCCeEEEeecCcceEeecCCCceEEEEcc--
Q 011700 292 YAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK--TDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYGN-- 367 (479)
Q Consensus 292 yA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~--~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~-- 367 (479)
||+|||+..+ .++..|..||+.||+||++... ..+|..+|+.. +...+++++|+++.++...+.
T Consensus 299 yA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~i--f~~p~~a~vGlte~~a~~~~~~~ 366 (450)
T PRK06116 299 YAVGDVTGRV----------ELTPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVV--FSHPPIGTVGLTEEEAREQYGED 366 (450)
T ss_pred EEEeecCCCc----------CcHHHHHHHHHHHHHHHhCCCCCCcCCcCCCCeEE--eCCCccEEeeCCHHHHHHhCCCC
Confidence 9999998653 4577899999999999997543 24667788533 333588999998754322110
Q ss_pred ------------------CCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCccccc
Q 011700 368 ------------------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAV 426 (479)
Q Consensus 368 ------------------~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~ 426 (479)
.....|.++.+ ++++|||+|++|++++|+ +.++.||+.++|++||.+++..||+++|.+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~ 446 (450)
T PRK06116 367 NVKVYRSSFTPMYTALTGHRQPCLMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAEEF 446 (450)
T ss_pred cEEEEEEecchhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHH
Confidence 01234565554 589999999999999998 568999999999999999998999998876
Q ss_pred CC
Q 011700 427 SQ 428 (479)
Q Consensus 427 ~~ 428 (479)
..
T Consensus 447 ~~ 448 (450)
T PRK06116 447 VT 448 (450)
T ss_pred hh
Confidence 54
No 11
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=2.4e-48 Score=419.94 Aligned_cols=385 Identities=21% Similarity=0.335 Sum_probs=307.4
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCC-CCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHh
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGV-PPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPK 79 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~-~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (479)
|+ ++++||||+|+||+.+|.+|++++. +..+|+||++++.++|.++.++..+.. ... ........+
T Consensus 1 m~-~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~-~~~-----------~~l~~~~~~ 67 (847)
T PRK14989 1 MS-KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSH-HTA-----------EELSLVREG 67 (847)
T ss_pred CC-CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcC-CCH-----------HHccCCCHH
Confidence 55 4589999999999999999987643 345799999999999998877653321 110 112234577
Q ss_pred HHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhc
Q 011700 80 WYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKS 159 (479)
Q Consensus 80 ~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~ 159 (479)
++++++++++.+++|+.+|++.+.|.+.+|++++||+||||||++|+.|++ ||.+.++++.+++++++..++..+.
T Consensus 68 ~~~~~gI~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~i---pG~~~~~v~~~rt~~d~~~l~~~~~- 143 (847)
T PRK14989 68 FYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPI---KGSETQDCFVYRTIEDLNAIEACAR- 143 (847)
T ss_pred HHHhCCCEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcCCCCC---CCCCCCCeEEECCHHHHHHHHHHHh-
Confidence 889999999999999999999999999889899999999999999998887 7777778999999999998877665
Q ss_pred CCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEE
Q 011700 160 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV 239 (479)
Q Consensus 160 ~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~ 239 (479)
.+++++|||+|++|+|+|..|.++|.+|+++++.++++++.++++.++.+.+.|+++||++++++.+++|..++++...
T Consensus 144 -~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~ 222 (847)
T PRK14989 144 -RSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARK 222 (847)
T ss_pred -cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceE
Confidence 4789999999999999999999999999999999999987789999999999999999999999999999763334455
Q ss_pred EEEeCCCcEEeccEEEEecCCCCChhhhhc-cccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHH
Q 011700 240 AVNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSA 317 (479)
Q Consensus 240 ~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A 317 (479)
.+.+.||+++++|.|++++|++||+++++. ++.. ++|+|.||++|||++|+|||+|||+..+...+ .++..|
T Consensus 223 ~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l~Ts~p~IYAiGD~a~~~~~~~------gl~~~a 296 (847)
T PRK14989 223 TMRFADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVF------GLVAPG 296 (847)
T ss_pred EEEECCCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCCCcCCCCCEEEeecceeEcCccc------ccHHHH
Confidence 688899999999999999999999998754 5666 57899999999999999999999998765433 467889
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCce-----EEEEccCCCCceEEEEc--cCCEEEEEEEeC
Q 011700 318 RKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGE-----VVHYGNFSGTTFGAYWV--NKGRLVGSFLEG 390 (479)
Q Consensus 318 ~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~-----~~~~~~~~~~~~~~~~~--~~~~i~G~~~~g 390 (479)
..||++||.||++..........| ...+.+++.+.+.|...+. +..+.+.....|.++.+ ++++|+|++++|
T Consensus 297 ~~~a~vaa~~i~g~~~~~~g~~~~-~~lk~~G~~v~s~G~~~~~~~~~~~~~~~~~~~~~y~Klv~~~~~~~LlGa~lvG 375 (847)
T PRK14989 297 YKMAQVAVDHLLGSENAFEGADLS-AKLKLLGVDVGGIGDAHGRTPGARSYVYLDESKEIYKRLIVSEDNKTLLGAVLVG 375 (847)
T ss_pred HHHHHHHHHHhcCCCcCCCCcccc-eEEEECCcceEecccccCCCCCceeEEEEcCCCCEEEEEEEECCCCEEEEEEEEC
Confidence 999999999999875322222223 3445677788888854332 33333333356777665 567999999999
Q ss_pred CCHHHHHHHHHHHHcCCCcCc
Q 011700 391 GTKEEYEAIAKATRLQPVVED 411 (479)
Q Consensus 391 ~~~~e~~~~~~~i~~~~~~~d 411 (479)
+.+ +...+...+..+.++.+
T Consensus 376 d~~-~~~~l~~~~~~~~~l~~ 395 (847)
T PRK14989 376 DTS-DYGNLLQLVLNAIELPE 395 (847)
T ss_pred CHH-HHHHHHHHHHcCCCCcc
Confidence 755 33333344556666654
No 12
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=5.1e-50 Score=410.76 Aligned_cols=392 Identities=20% Similarity=0.243 Sum_probs=287.4
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCCcc-cccccCCC----CCCCCCCcccccCC-----
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PYERPAL-SKGYLLPE----APARLPSFHTCVGA----- 71 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~~l-~~~~~~~~----~~~~~~~~~~~~~~----- 71 (479)
+||++||||||||++||..++++|++ |+|+|++... +.++.|+ +|.++... .....+.+......
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~---V~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 78 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAK---VAIAEEPRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDW 78 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCc---EEEEecCccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCH
Confidence 59999999999999999999999998 9999986321 1111222 22111100 00001111100000
Q ss_pred ------------cccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCC
Q 011700 72 ------------NEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAE 139 (479)
Q Consensus 72 ------------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~ 139 (479)
.........+++.|++++.+ ++..++++...+. .++++++||+||||||++|..|++ ||.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~~~v~v~-~~g~~~~~d~lIiATGs~p~~p~i---~G~~-- 151 (446)
T TIGR01424 79 KKLLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGPNTVEVL-QDGTTYTAKKILIAVGGRPQKPNL---PGHE-- 151 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEe-cCCeEEEcCEEEEecCCcCCCCCC---CCcc--
Confidence 00112334566789999988 7777776533332 456789999999999999988876 5543
Q ss_pred CeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCc
Q 011700 140 NVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV 219 (479)
Q Consensus 140 ~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV 219 (479)
...+ ..++..+ .. .+++++|||+|++|+|+|..|++.|.+|+++++.+.+++. +++++.+.+.+.|+++||
T Consensus 152 ~~~~---~~~~~~l----~~-~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV 222 (446)
T TIGR01424 152 LGIT---SNEAFHL----PT-LPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG-FDDDMRALLARNMEGRGI 222 (446)
T ss_pred ceec---hHHhhcc----cc-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc-cCHHHHHHHHHHHHHCCC
Confidence 1221 2222221 11 4789999999999999999999999999999999998886 899999999999999999
Q ss_pred EEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcCcccCCCCCeEEEe
Q 011700 220 KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRLQSSNSSVYAVG 295 (479)
Q Consensus 220 ~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~l~t~~~~IyA~G 295 (479)
++++++.+.+++..+++ ..+.+.+++++++|.|++|+|++|+++.+ ..++.. ++|+|.||+++||++|+|||+|
T Consensus 223 ~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~G 300 (446)
T TIGR01424 223 RIHPQTSLTSITKTDDG--LKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVG 300 (446)
T ss_pred EEEeCCEEEEEEEcCCe--EEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEee
Confidence 99999999999863333 34667788899999999999999999843 335655 5688999999999999999999
Q ss_pred eeccccccccCceeecccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEeecCcceEeecCCCceEEEEc-c------
Q 011700 296 DVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-N------ 367 (479)
Q Consensus 296 D~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~-~------ 367 (479)
||+..+ ..+..|.+||+.|++||++... ..++..+|+.+ +...+++++|+++.++...+ .
T Consensus 301 D~~~~~----------~l~~~A~~~g~~~a~~i~~~~~~~~~~~~~p~~i--f~~p~ia~vG~te~~a~~~~~~~~~~~~ 368 (446)
T TIGR01424 301 DVTDRI----------NLTPVAIMEATCFANTEFGNNPTKFDHDLIATAV--FSQPPLGTVGLTEEEAREKFTGDILVYR 368 (446)
T ss_pred ccCCCc----------cchhHHHHHHHHHHHHHhcCCCCccCcCCCCeEE--eCCchhEEEECCHHHHHhhcCCCEEEEE
Confidence 999754 4567899999999999997542 24556778533 23457899999875443221 0
Q ss_pred ----C--------CCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCC
Q 011700 368 ----F--------SGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQ 428 (479)
Q Consensus 368 ----~--------~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~ 428 (479)
. ....|.++.+ ++++|||+|++|++++|+ +.++.||+.++|++||.+++..||+++|.+..
T Consensus 369 ~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~ 444 (446)
T TIGR01424 369 AGFRPMKNTFSGRQEKTLMKLVVDEKDDKVLGAHMVGPDAAEIIQGIAIALKMGATKADFDSTVGIHPSSAEEFVT 444 (446)
T ss_pred EecCchHhHhhcCCCceEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCChHHHHhh
Confidence 0 0134555554 689999999999999998 56899999999999999999999999887654
No 13
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=3.2e-50 Score=415.13 Aligned_cols=397 Identities=17% Similarity=0.227 Sum_probs=290.6
Q ss_pred CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC---CCCCcc-cccccCC-------CCCCCCCCcccc--
Q 011700 2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP---YERPAL-SKGYLLP-------EAPARLPSFHTC-- 68 (479)
Q Consensus 2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~---~~~~~l-~~~~~~~-------~~~~~~~~~~~~-- 68 (479)
|++|||+||||||||++||.+|+++|++ |+|||+.+... .+..+. ++.+... .....+..+...
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~---v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~ 79 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKR---VAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLR 79 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCE---EEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCc
Confidence 3579999999999999999999999987 99999864321 111111 1111000 000000000000
Q ss_pred c-CCc-----------ccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCc--EEEeceEEeecCCCcccccccCCC
Q 011700 69 V-GAN-----------EERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGE--TISYKILIIATGARALKLEEFGLS 134 (479)
Q Consensus 69 ~-~~~-----------~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~--~~~~d~lviAtG~~~~~~~~~g~~ 134 (479)
. ... ......+++++.+++++.+ .+..++....++...+++ +++||+||||||++|..|+. +
T Consensus 80 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~---~ 155 (461)
T PRK05249 80 ITFADLLARADHVINKQVEVRRGQYERNRVDLIQG-RARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPD---V 155 (461)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCC---C
Confidence 0 000 0011234556789999988 566666655555555554 79999999999999998876 3
Q ss_pred CCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHH
Q 011700 135 GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYY 214 (479)
Q Consensus 135 g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l 214 (479)
+.+.+++++..++.+. .. .+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+.+
T Consensus 156 ~~~~~~v~~~~~~~~~-------~~-~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~l 226 (461)
T PRK05249 156 DFDHPRIYDSDSILSL-------DH-LPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF-LDDEISDALSYHL 226 (461)
T ss_pred CCCCCeEEcHHHhhch-------hh-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc-CCHHHHHHHHHHH
Confidence 3343445443322211 11 4799999999999999999999999999999999999886 8999999999999
Q ss_pred HhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcCcccCCCCC
Q 011700 215 KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRLQSSNSS 290 (479)
Q Consensus 215 ~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~l~t~~~~ 290 (479)
+++||++++++.+++++.+++ .+ .+.+.+|+++++|.|++|+|++|++.++ ..++.. ++|+|.||+++||+.|+
T Consensus 227 ~~~gI~v~~~~~v~~i~~~~~-~~-~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~ 304 (461)
T PRK05249 227 RDSGVTIRHNEEVEKVEGGDD-GV-IVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPH 304 (461)
T ss_pred HHcCCEEEECCEEEEEEEeCC-eE-EEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCCCC
Confidence 999999999999999986333 32 4567788899999999999999999853 335555 56889999999999999
Q ss_pred eEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEEEEc----
Q 011700 291 VYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG---- 366 (479)
Q Consensus 291 IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~---- 366 (479)
|||+|||++.+ ..+..|..||+.||.||++.....++..+|... +...+++++|+++.++...|
T Consensus 305 IyAiGD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~i--~~~p~ia~vG~te~~a~~~g~~~~ 372 (461)
T PRK05249 305 IYAVGDVIGFP----------SLASASMDQGRIAAQHAVGEATAHLIEDIPTGI--YTIPEISSVGKTEQELTAAKVPYE 372 (461)
T ss_pred EEEeeecCCCc----------ccHhHHHHHHHHHHHHHcCCCcccccCCCCeEE--ECCCcceEecCCHHHHHHcCCCeE
Confidence 99999999754 346789999999999999765445667788644 33457899999875432111
Q ss_pred -------cC-------CCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCC
Q 011700 367 -------NF-------SGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQ 428 (479)
Q Consensus 367 -------~~-------~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~ 428 (479)
+. ....|.++.+ ++++|||+|++|++++|+ +.++.||+.++|++||.+++..||+++|.+..
T Consensus 373 ~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~ 451 (461)
T PRK05249 373 VGRARFKELARAQIAGDNVGMLKILFHRETLEILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNTTFNYPTMAEAYRV 451 (461)
T ss_pred EEEEccccccceeecCCCCcEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHH
Confidence 10 1134555544 689999999999999998 56899999999999999999999998876643
No 14
>PLN02507 glutathione reductase
Probab=100.00 E-value=2.9e-49 Score=408.57 Aligned_cols=394 Identities=18% Similarity=0.212 Sum_probs=290.0
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC-------CCCCCCCccc------ccccCCCC----CCCCCCcc
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP-------VAPYERPALS------KGYLLPEA----PARLPSFH 66 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~-------~~~~~~~~l~------~~~~~~~~----~~~~~~~~ 66 (479)
+||++||||||||+.||..|+++|.+ |+|||+.. ...+...|+. |.++.... ......+.
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~---V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G 101 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAK---VGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYG 101 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcC
Confidence 48999999999999999999999988 99999621 0112222222 22211000 00000000
Q ss_pred cccCCc------------------ccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCc--EEEeceEEeecCCCcc
Q 011700 67 TCVGAN------------------EERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGE--TISYKILIIATGARAL 126 (479)
Q Consensus 67 ~~~~~~------------------~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~--~~~~d~lviAtG~~~~ 126 (479)
...... ........+.+.+|+++.+ ++..+++....+...+|+ ++.||+||||||++|.
T Consensus 102 ~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~ 180 (499)
T PLN02507 102 WEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQ 180 (499)
T ss_pred cccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCC
Confidence 000000 0011223455689999998 777888877777777775 5889999999999998
Q ss_pred cccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHH
Q 011700 127 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 206 (479)
Q Consensus 127 ~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~ 206 (479)
.|++ ||.+ ... +..++..+. . .+++++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++
T Consensus 181 ~p~i---pG~~--~~~---~~~~~~~l~----~-~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~ 246 (499)
T PLN02507 181 RPNI---PGKE--LAI---TSDEALSLE----E-LPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG-FDDEM 246 (499)
T ss_pred CCCC---CCcc--cee---chHHhhhhh----h-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc-cCHHH
Confidence 8876 5532 122 223333221 2 3789999999999999999999999999999999988876 89999
Q ss_pred HHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcC
Q 011700 207 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTG 282 (479)
Q Consensus 207 ~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~ 282 (479)
.+.+.+.|+++||++++++.+++++.. ++.+ .+.+.+|+++++|.|++++|++|++.++ ..++.. ++|+|.||+
T Consensus 247 ~~~l~~~l~~~GI~i~~~~~V~~i~~~-~~~~-~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~ 324 (499)
T PLN02507 247 RAVVARNLEGRGINLHPRTNLTQLTKT-EGGI-KVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDE 324 (499)
T ss_pred HHHHHHHHHhCCCEEEeCCEEEEEEEe-CCeE-EEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCC
Confidence 999999999999999999999999863 3333 4667788899999999999999999863 334655 568899999
Q ss_pred cccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCC-CCCCCCCeEEEeecCcceEeecCCCce
Q 011700 283 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSWQFYGDNVGE 361 (479)
Q Consensus 283 ~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~p~~~~~~~~~~~~~~G~~~~~ 361 (479)
++||++|||||+|||+..+ ..++.|..||+++++||++.... ..+..+|. ..+...+++++|+++.+
T Consensus 325 ~~~Ts~p~IyAiGDv~~~~----------~l~~~A~~qg~~aa~ni~g~~~~~~~~~~~p~--~if~~p~ia~vGlte~e 392 (499)
T PLN02507 325 YSRTNIPSIWAIGDVTNRI----------NLTPVALMEGTCFAKTVFGGQPTKPDYENVAC--AVFCIPPLSVVGLSEEE 392 (499)
T ss_pred CCcCCCCCEEEeeEcCCCC----------ccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCe--EEECCCccEEEeCCHHH
Confidence 9999999999999999754 35678999999999999875432 35556674 22334478999998754
Q ss_pred EEEE-c--------cC----------CCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcC
Q 011700 362 VVHY-G--------NF----------SGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQG 419 (479)
Q Consensus 362 ~~~~-~--------~~----------~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~ 419 (479)
+... + .. ....|.++.+ ++++|||+|++|+++.|+ +.++.||+.++|++||.+++..|
T Consensus 393 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~h 472 (499)
T PLN02507 393 AVEQAKGDILVFTSSFNPMKNTISGRQEKTVMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDSTVGIH 472 (499)
T ss_pred HHhccCCCEEEEEeecCccccccccCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcCcCC
Confidence 4321 1 00 0124555544 589999999999999887 56899999999999999999999
Q ss_pred CCcccccCCC
Q 011700 420 LGFALAVSQK 429 (479)
Q Consensus 420 ~~~a~~~~~~ 429 (479)
|+++|.+...
T Consensus 473 Pt~~E~~~~~ 482 (499)
T PLN02507 473 PSAAEEFVTM 482 (499)
T ss_pred CChHHHHHHH
Confidence 9999887654
No 15
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=7.1e-50 Score=412.16 Aligned_cols=396 Identities=21% Similarity=0.276 Sum_probs=291.3
Q ss_pred CCC--cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCCcc-cccccCC-------CC-C--CCC---
Q 011700 1 MGR--AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PYERPAL-SKGYLLP-------EA-P--ARL--- 62 (479)
Q Consensus 1 M~~--~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~~l-~~~~~~~-------~~-~--~~~--- 62 (479)
||+ +|||+||||||||++||..|+++|.+ |+|||++... +.++.|+ ++.++.. .. . ..+
T Consensus 1 ~~~~~~~dviVIGaG~aG~~aA~~l~~~g~~---v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~ 77 (468)
T PRK14694 1 MMSDNNLHIAVIGSGGSAMAAALKATERGAR---VTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQ 77 (468)
T ss_pred CCCCCcCCEEEECCCHHHHHHHHHHHhCCCc---EEEEEccccccceecCCccccHHHHHHHHHHHHHhhccccCCcccC
Confidence 553 69999999999999999999999987 9999987531 1222222 1111100 00 0 000
Q ss_pred -CCccc--ccC--Ccc----c-CCCHhHHHHc-CcEEEeCceEEEEECCCcEEEeCCC--cEEEeceEEeecCCCccccc
Q 011700 63 -PSFHT--CVG--ANE----E-RLTPKWYNEH-GIELVLGTRVKSADVRRKTLVTATG--ETISYKILIIATGARALKLE 129 (479)
Q Consensus 63 -~~~~~--~~~--~~~----~-~~~~~~~~~~-gv~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~~~~~~ 129 (479)
+.+.. ... ... . ......++++ +++++.+ ++..++.+.+.|.+.++ ++++||+||||||++|+.|+
T Consensus 78 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~ 156 (468)
T PRK14694 78 APVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNG-EARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPP 156 (468)
T ss_pred CCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCC
Confidence 00000 000 000 0 0112223333 8999998 78889988888888776 47999999999999999888
Q ss_pred ccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHH
Q 011700 130 EFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASY 209 (479)
Q Consensus 130 ~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~ 209 (479)
+ ||.+...+++. .+...+ .. .+++++|||+|++|+|+|..|+++|.+|+++++ +++++. +++++.+.
T Consensus 157 i---~G~~~~~~~~~---~~~~~l----~~-~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~-~~~l~~-~~~~~~~~ 223 (468)
T PRK14694 157 V---PGLAETPYLTS---TSALEL----DH-IPERLLVIGASVVALELAQAFARLGSRVTVLAR-SRVLSQ-EDPAVGEA 223 (468)
T ss_pred C---CCCCCCceEcc---hhhhch----hc-CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEC-CCCCCC-CCHHHHHH
Confidence 7 55443333322 222222 11 478999999999999999999999999999986 467775 79999999
Q ss_pred HHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhh---cccccccCcEEEcCcccC
Q 011700 210 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE---GQLTLEKGGIKVTGRLQS 286 (479)
Q Consensus 210 ~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~---~~~~~~~g~i~Vd~~l~t 286 (479)
+++.|+++||++++++.+.+++.+ ++. ..+.+.+ .++++|.|++++|++|++.++. .++..++|+|.||+++||
T Consensus 224 l~~~l~~~GI~v~~~~~v~~i~~~-~~~-~~v~~~~-~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~~~T 300 (468)
T PRK14694 224 IEAAFRREGIEVLKQTQASEVDYN-GRE-FILETNA-GTLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEHLQT 300 (468)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEc-CCE-EEEEECC-CEEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCCccc
Confidence 999999999999999999999863 332 2355444 4799999999999999998652 345556788999999999
Q ss_pred CCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEEEEc
Q 011700 287 SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG 366 (479)
Q Consensus 287 ~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~ 366 (479)
++|+|||+|||+..+. .+..|..||+.||.||++.....++..+|. ..+++++++++|+++.++...|
T Consensus 301 s~~~IyA~GD~~~~~~----------~~~~A~~~G~~aa~~i~~~~~~~~~~~~p~--~~~~~p~~a~vGlte~~a~~~g 368 (468)
T PRK14694 301 TVSGIYAAGDCTDQPQ----------FVYVAAAGGSRAAINMTGGDASLDLSAMPE--VIFTDPQVATVGLSEAEAQAQG 368 (468)
T ss_pred CCCCEEEEeecCCCcc----------cHHHHHHHHHHHHHHhcCCCcccccCCCCe--EEECCCCeEEeeCCHHHHHHcC
Confidence 9999999999997653 466789999999999997654455666776 4578899999999876442111
Q ss_pred -----------c-------CCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccc
Q 011700 367 -----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALA 425 (479)
Q Consensus 367 -----------~-------~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~ 425 (479)
. .....|.++.+ ++++|||+|++|+++.|+ +.++.||+.++|++||.++...||+++|.
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~ 448 (468)
T PRK14694 369 YDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADELFPYLTMVEG 448 (468)
T ss_pred CceEEEEEecccchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCchHHH
Confidence 0 01234666554 689999999999999998 56899999999999999999999999987
Q ss_pred cCC
Q 011700 426 VSQ 428 (479)
Q Consensus 426 ~~~ 428 (479)
+..
T Consensus 449 ~~~ 451 (468)
T PRK14694 449 LKL 451 (468)
T ss_pred HHH
Confidence 654
No 16
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=2e-49 Score=411.05 Aligned_cols=402 Identities=16% Similarity=0.201 Sum_probs=288.3
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCCcc-cccccCCCCCCC----CCCcccccCC--c--
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PYERPAL-SKGYLLPEAPAR----LPSFHTCVGA--N-- 72 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~~l-~~~~~~~~~~~~----~~~~~~~~~~--~-- 72 (479)
+||++||||||||++||..+++.|.+ |+|||++... +-++.|+ +|.++....... ...+...... +
T Consensus 48 ~yDvvVIG~G~aG~~aA~~aa~~G~~---ValIEk~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~ 124 (561)
T PTZ00058 48 VYDLIVIGGGSGGMAAARRAARNKAK---VALVEKDYLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLP 124 (561)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCe---EEEEecccccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHH
Confidence 58999999999999999999999987 9999987431 2222233 222222111000 0000000000 0
Q ss_pred ------------ccCCCHhHHHHcCcEEEeCceEEEEECCCcEEE----------------------------eCCCcEE
Q 011700 73 ------------EERLTPKWYNEHGIELVLGTRVKSADVRRKTLV----------------------------TATGETI 112 (479)
Q Consensus 73 ------------~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~----------------------------~~~g~~~ 112 (479)
......+.+++.||+++.++..+ + +.++|. ..+++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f-~--~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i 201 (561)
T PTZ00058 125 LLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSL-L--SENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVI 201 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEE-e--cCCEEEeeccccccccccccccccceeeeccceecCCCcEE
Confidence 01112344567899999985422 1 222221 2356789
Q ss_pred EeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEe
Q 011700 113 SYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 192 (479)
Q Consensus 113 ~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~ 192 (479)
+||+||||||++|+.|++ +|.+ .+++. ++... +. .+++++|||+|++|+|+|..|.++|.+||+++
T Consensus 202 ~ad~lVIATGS~P~~P~I---pG~~--~v~ts---~~~~~----l~--~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~ 267 (561)
T PTZ00058 202 EGKNILIAVGNKPIFPDV---KGKE--FTISS---DDFFK----IK--EAKRIGIAGSGYIAVELINVVNRLGAESYIFA 267 (561)
T ss_pred ECCEEEEecCCCCCCCCC---CCce--eEEEH---HHHhh----cc--CCCEEEEECCcHHHHHHHHHHHHcCCcEEEEE
Confidence 999999999999988876 5543 23322 22211 22 37999999999999999999999999999999
Q ss_pred ecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC-CcEEeccEEEEecCCCCChhhhhc--
Q 011700 193 PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-GNRLPTDMVVVGIGIRPNTSLFEG-- 269 (479)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~-g~~i~~D~Vi~a~G~~p~~~l~~~-- 269 (479)
+.+++++. +|+++.+.+.+.|+++||++++++.+.+++..+++.+ .+.+.+ ++++++|.|++++|++|+++++..
T Consensus 268 ~~~~il~~-~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v-~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~ 345 (561)
T PTZ00058 268 RGNRLLRK-FDETIINELENDMKKNNINIITHANVEEIEKVKEKNL-TIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKA 345 (561)
T ss_pred eccccccc-CCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcE-EEEECCCCEEEECCEEEECcCCCCCccccCccc
Confidence 99998875 8999999999999999999999999999986433333 234444 457999999999999999987643
Q ss_pred -ccccccCcEEEcCcccCCCCCeEEEeeecccccc-----------------------ccCcee-ecccHHHHHHHHHHH
Q 011700 270 -QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLK-----------------------LLGETR-RLEHVDSARKSAKHA 324 (479)
Q Consensus 270 -~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~-----------------------~~g~~~-~~~~~~~A~~~g~~a 324 (479)
++..++|+|.||+++||++|+|||+|||+..+.. .++++. ..+++..|.+||+++
T Consensus 346 ~~~~~~~G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~a 425 (561)
T PTZ00058 346 LNIKTPKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLL 425 (561)
T ss_pred cceecCCCeEEECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHH
Confidence 2333678899999999999999999999984321 223332 357788999999999
Q ss_pred HHHHcCCCC-CCCCCCCCeEEEeecCcceEeecCCCceEEEE-c---------cC--------------CCCceEEEEc-
Q 011700 325 VAAIMEPDK-TDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHY-G---------NF--------------SGTTFGAYWV- 378 (479)
Q Consensus 325 a~~i~~~~~-~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~-~---------~~--------------~~~~~~~~~~- 378 (479)
+.||++... ..++..+|+. .+.+.+++++|+++.++... + .. ....|.++.+
T Consensus 426 a~ni~g~~~~~~~~~~ip~~--vft~peiA~vGlte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~ 503 (561)
T PTZ00058 426 ADRLFGPFSRTTNYKLIPSV--IFSHPPIGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKLVCV 503 (561)
T ss_pred HHHHhCCCCcccCCCCCCeE--EeCCchheeeeCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEEEEEEE
Confidence 999997532 2456677853 23446899999987654321 1 00 0123555544
Q ss_pred -cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCCC
Q 011700 379 -NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQK 429 (479)
Q Consensus 379 -~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~~ 429 (479)
++++|+|+|++|+++.|+ +.++.||+.++|++||.+++..||+++|.+...
T Consensus 504 ~~t~~ILG~~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPt~~e~~~~~ 556 (561)
T PTZ00058 504 GKEELIKGLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAEEFVTM 556 (561)
T ss_pred CCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCChHHHHHHh
Confidence 689999999999999998 568999999999999999999999999877654
No 17
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=2.1e-49 Score=406.35 Aligned_cols=392 Identities=18% Similarity=0.239 Sum_probs=286.3
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccc------cCCCCCCCCCCcccccC--Cc--
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGY------LLPEAPARLPSFHTCVG--AN-- 72 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~~~~--~~-- 72 (479)
++||||||||||||++||.+|+++|++ |+|||+++.. +...++..++ +.... ....+..... ..
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~---V~lie~~~~~-~GG~~~~~gcip~k~l~~~~~--~~~~~~~~~~~~~~~~ 75 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWR---VALIEQSNAM-YGGTCINIGCIPTKTLVHDAQ--QHTDFVRAIQRKNEVV 75 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCe---EEEEcCCCCc-cceeEeeccccchHHHHHHhc--cCCCHHHHHHHHHHHH
Confidence 569999999999999999999999987 9999987531 1112221111 11100 0001100000 00
Q ss_pred --ccC-CCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCc-EEEeceEEeecCCCcccccccCCCCCC-CCCeEEecCH
Q 011700 73 --EER-LTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGE-TISYKILIIATGARALKLEEFGLSGSD-AENVCYLRDL 147 (479)
Q Consensus 73 --~~~-~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~-~~~~d~lviAtG~~~~~~~~~g~~g~~-~~~v~~~~~~ 147 (479)
... ......+..+++++.+ ++..++.....+...++. ++.||+||||||++|..|++ ||.+ .+++++...+
T Consensus 76 ~~~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i---~G~~~~~~v~~~~~~ 151 (441)
T PRK08010 76 NFLRNKNFHNLADMPNIDVIDG-QAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPI---PGITTTPGVYDSTGL 151 (441)
T ss_pred HHHHHhHHHHHhhcCCcEEEEE-EEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCC---CCccCCCCEEChhHh
Confidence 000 0111222348999987 677777765666666664 69999999999999998887 5542 2445543322
Q ss_pred HHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCce
Q 011700 148 ADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVL 227 (479)
Q Consensus 148 ~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v 227 (479)
.+ +.. .+++++|||+|++|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.|+++||++++++.+
T Consensus 152 ~~-------~~~-~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~gV~v~~~~~v 222 (441)
T PRK08010 152 LN-------LKE-LPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR-EDRDIADNIATILRDQGVDIILNAHV 222 (441)
T ss_pred hc-------ccc-cCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC-cCHHHHHHHHHHHHhCCCEEEeCCEE
Confidence 21 111 4789999999999999999999999999999999999886 69999999999999999999999999
Q ss_pred EEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcCcccCCCCCeEEEeeecccccc
Q 011700 228 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLK 303 (479)
Q Consensus 228 ~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~ 303 (479)
.+++.+ ++.+ .+...++ ++++|.|++++|++||++++ ..++.. ++|+|.||+++||++|+|||+|||++.++
T Consensus 223 ~~i~~~-~~~v-~v~~~~g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~- 298 (441)
T PRK08010 223 ERISHH-ENQV-QVHSEHA-QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTGGLQ- 298 (441)
T ss_pred EEEEEc-CCEE-EEEEcCC-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc-
Confidence 999863 3333 3454454 68999999999999999753 334655 56889999999999999999999998653
Q ss_pred ccCceeecccHHHHHHHHHHHHHHHcCCCCC--CCCCCCCeEEEeecCcceEeecCCCceEEEEc-----------cCC-
Q 011700 304 LLGETRRLEHVDSARKSAKHAVAAIMEPDKT--DKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-----------NFS- 369 (479)
Q Consensus 304 ~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~--~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~-----------~~~- 369 (479)
....|..+|+.+++||++.... ..+..+|. ..+++++++++|+++.++...| +..
T Consensus 299 ---------~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~p~--~~~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~ 367 (441)
T PRK08010 299 ---------FTYISLDDYRIVRDELLGEGKRSTDDRKNVPY--SVFMTPPLSRVGMTEEQARESGADIQVVTLPVAAIPR 367 (441)
T ss_pred ---------chhHHHHHHHHHHHHHcCCCCcccCccCCCCE--EEECCCCceeeeCCHHHHHHcCCCeEEEEEecCcChh
Confidence 3556888999999999974221 34556774 4578899999999886543211 100
Q ss_pred ------CCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCC
Q 011700 370 ------GTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQ 428 (479)
Q Consensus 370 ------~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~ 428 (479)
...|.++.+ ++++|||+|++|+++.|+ +.++.||++++|++||.++...||++++.+..
T Consensus 368 ~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~ 435 (441)
T PRK08010 368 ARVMNDTRGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLND 435 (441)
T ss_pred hhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhccccCCchHHHHHH
Confidence 123555544 689999999999999998 56899999999999999999888888886644
No 18
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.3e-49 Score=410.42 Aligned_cols=396 Identities=22% Similarity=0.297 Sum_probs=286.9
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCCcc-cccccCCCCC----CCCCCcccccCC----
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PYERPAL-SKGYLLPEAP----ARLPSFHTCVGA---- 71 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~~l-~~~~~~~~~~----~~~~~~~~~~~~---- 71 (479)
.+||++||||||||++||..|+++|++ |+|||+++.. +.+..++ ++.++..... ...+.+......
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~---V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLK---VAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGID 79 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCc---EEEEeccccccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccC
Confidence 469999999999999999999999987 9999998631 1122222 2221111000 000001000000
Q ss_pred -------------cccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCC-CcEEEeceEEeecCCCcccccccCCCCCC
Q 011700 72 -------------NEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTAT-GETISYKILIIATGARALKLEEFGLSGSD 137 (479)
Q Consensus 72 -------------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~-g~~~~~d~lviAtG~~~~~~~~~g~~g~~ 137 (479)
.....+...+++.|++++.+ .+..+++...++...+ ++++.||+||||||++|..|+. ++ .+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~pg--~~-~~ 155 (462)
T PRK06416 80 FKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRG-EAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELPG--IE-ID 155 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCCCC--CC-CC
Confidence 00011233456789999998 5666665544454323 3689999999999999976532 21 11
Q ss_pred CCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhC
Q 011700 138 AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSK 217 (479)
Q Consensus 138 ~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~ 217 (479)
...+++ ..++..+. . .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+.+.+.++++
T Consensus 156 ~~~v~~---~~~~~~~~----~-~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~ 226 (462)
T PRK06416 156 GRVIWT---SDEALNLD----E-VPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG-EDKEISKLAERALKKR 226 (462)
T ss_pred CCeEEc---chHhhCcc----c-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc-CCHHHHHHHHHHHHHc
Confidence 122333 23332221 1 4789999999999999999999999999999999999886 8999999999999999
Q ss_pred CcEEEcCCceEEEEEcCCCcEEEEEeCCC---cEEeccEEEEecCCCCChhhh---hcccccccCcEEEcCcccCCCCCe
Q 011700 218 GVKFVKGTVLSSFDVDSNGKVVAVNLRDG---NRLPTDMVVVGIGIRPNTSLF---EGQLTLEKGGIKVTGRLQSSNSSV 291 (479)
Q Consensus 218 GV~i~~~~~v~~i~~~~~g~v~~v~~~~g---~~i~~D~Vi~a~G~~p~~~l~---~~~~~~~~g~i~Vd~~l~t~~~~I 291 (479)
||++++++++.+++.+ ++.+ .+.+.++ +++++|.|++++|++|++.++ +.++..++|+|.||+++||++|+|
T Consensus 227 gV~i~~~~~V~~i~~~-~~~v-~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i~vd~~~~t~~~~V 304 (462)
T PRK06416 227 GIKIKTGAKAKKVEQT-DDGV-TVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQLRTNVPNI 304 (462)
T ss_pred CCEEEeCCEEEEEEEe-CCEE-EEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeecCCEEeECCCCccCCCCE
Confidence 9999999999999873 3333 4555555 679999999999999999865 334555678899999999999999
Q ss_pred EEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEEEEc-----
Q 011700 292 YAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG----- 366 (479)
Q Consensus 292 yA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~----- 366 (479)
||+|||+..+ ..+..|..||+.+|.||++.....++..+|. ..+++++++++|+++.++...|
T Consensus 305 yAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~~--~~~~~~~~a~vG~te~~a~~~g~~~~~ 372 (462)
T PRK06416 305 YAIGDIVGGP----------MLAHKASAEGIIAAEAIAGNPHPIDYRGIPA--VTYTHPEVASVGLTEAKAKEEGFDVKV 372 (462)
T ss_pred EEeeecCCCc----------chHHHHHHHHHHHHHHHcCCCCCCCCCCCCe--EEECCCceEEEeCCHHHHHhcCCCeEE
Confidence 9999999754 4577899999999999998543334444554 5678999999999876542211
Q ss_pred ------cC-------CCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCC
Q 011700 367 ------NF-------SGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQ 428 (479)
Q Consensus 367 ------~~-------~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~ 428 (479)
.. ....|.++.+ ++++|||+|++|+++.|+ +.++.||+.++|++||.++...||++++.+..
T Consensus 373 ~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~ 450 (462)
T PRK06416 373 VKFPFAGNGKALALGETDGFVKLIFDKKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTIHPHPTLSEALGE 450 (462)
T ss_pred EEEecCcChHhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHHHH
Confidence 00 1133555444 689999999999999998 66899999999999999998889998876643
No 19
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=2.2e-49 Score=406.91 Aligned_cols=396 Identities=16% Similarity=0.221 Sum_probs=286.9
Q ss_pred CCcCeEEEECCchHHHHHHHHHHHc-CCCCCcEEEEcCC-----C-CCCCCCCcccccccC------CCC----CCCCCC
Q 011700 2 GRAFVYVIVGGGVAAGYAALEFTKR-GVPPGELCIISEE-----P-VAPYERPALSKGYLL------PEA----PARLPS 64 (479)
Q Consensus 2 ~~~~dvvIIGgG~aGl~aA~~l~~~-g~~~~~V~lie~~-----~-~~~~~~~~l~~~~~~------~~~----~~~~~~ 64 (479)
+++||++||||||||+.||..++++ |.+ |+|||++ + ...+...|+..++.. ... ......
T Consensus 1 ~~~~DviVIG~G~~G~~aA~~aa~~~g~~---V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~ 77 (486)
T TIGR01423 1 SKAFDLVVIGAGSGGLEAGWNAATLYKKR---VAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAG 77 (486)
T ss_pred CCccCEEEECCChHHHHHHHHHHHhcCCE---EEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhc
Confidence 3679999999999999999999996 777 9999974 0 011223333222221 100 000011
Q ss_pred cccccC--C---c--------------ccCCCHhHHHH-cCcEEEeCceEEEEECCCcEEEeCC--------CcEEEece
Q 011700 65 FHTCVG--A---N--------------EERLTPKWYNE-HGIELVLGTRVKSADVRRKTLVTAT--------GETISYKI 116 (479)
Q Consensus 65 ~~~~~~--~---~--------------~~~~~~~~~~~-~gv~~~~~~~v~~i~~~~~~v~~~~--------g~~~~~d~ 116 (479)
+..... . + ......+++++ .+++++.+.. .- .+.++|.+.+ .++++||+
T Consensus 78 ~gi~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a-~f--~~~~~v~V~~~~~~~~~~~~~~~~d~ 154 (486)
T TIGR01423 78 FGWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWG-AL--EDKNVVLVRESADPKSAVKERLQAEH 154 (486)
T ss_pred cCeeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEE-EE--ccCCEEEEeeccCCCCCcceEEECCE
Confidence 100000 0 0 00112233455 4899999853 32 4456666531 24799999
Q ss_pred EEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhC---CCeEEEEee
Q 011700 117 LIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN---KINVTMVFP 193 (479)
Q Consensus 117 lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~---g~~Vtlv~~ 193 (479)
||||||++|..|++ +|.+ .+++. .++.. +.. .+++++|||+|++|+|+|..|..+ |.+||++++
T Consensus 155 lIIATGs~p~~p~i---~G~~--~~~~~---~~~~~----~~~-~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~ 221 (486)
T TIGR01423 155 ILLATGSWPQMLGI---PGIE--HCISS---NEAFY----LDE-PPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYR 221 (486)
T ss_pred EEEecCCCCCCCCC---CChh--heech---hhhhc----ccc-CCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEec
Confidence 99999999988876 5543 23322 22221 112 479999999999999999877665 999999999
Q ss_pred cCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhh---cc
Q 011700 194 EAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE---GQ 270 (479)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~---~~ 270 (479)
.+++++. +|+++++.+.+.|+++||++++++.+++++..+++ ...+.+.+++++++|.|++++|++|++.++. .+
T Consensus 222 ~~~il~~-~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~-~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~g 299 (486)
T TIGR01423 222 NNMILRG-FDSTLRKELTKQLRANGINIMTNENPAKVTLNADG-SKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVG 299 (486)
T ss_pred CCccccc-cCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCc-eEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhC
Confidence 9999885 89999999999999999999999999999864333 2356677888999999999999999998642 45
Q ss_pred ccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEeec
Q 011700 271 LTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVF 348 (479)
Q Consensus 271 ~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~p~~~~~~~ 348 (479)
+.. ++|+|.||+++||++|||||+|||++.+ ..++.|..||++|++||++... ..++..+|+.. +.
T Consensus 300 l~~~~~G~I~Vd~~l~Ts~~~IyA~GDv~~~~----------~l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~~v--ft 367 (486)
T TIGR01423 300 VELTKKGAIQVDEFSRTNVPNIYAIGDVTDRV----------MLTPVAINEGAAFVDTVFGNKPRKTDHTRVASAV--FS 367 (486)
T ss_pred ceECCCCCEecCCCCcCCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHhCCCCcccCCCCCCEEE--eC
Confidence 665 5688999999999999999999999765 3466799999999999997542 24556678533 33
Q ss_pred CcceEeecCCCceEEEEccC-------------------CCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcC
Q 011700 349 TLSWQFYGDNVGEVVHYGNF-------------------SGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQ 406 (479)
Q Consensus 349 ~~~~~~~G~~~~~~~~~~~~-------------------~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~ 406 (479)
.++++++|+++.++...++. ....|.++.+ ++++|||+|++|++++|+ +.++.||+.+
T Consensus 368 ~peia~vGlte~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI~~~~~ai~~~ 447 (486)
T TIGR01423 368 IPPIGTCGLVEEDAAKKFEKVAVYESSFTPLMHNISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKLN 447 (486)
T ss_pred CCceEEeeCCHHHHHhcCCceEEEEEeeCchhhhhccCccCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcC
Confidence 45789999987654322110 0123555554 689999999999999998 5689999999
Q ss_pred CCcCcHHHHhhcCCCcccccCCCC
Q 011700 407 PVVEDLAELETQGLGFALAVSQKP 430 (479)
Q Consensus 407 ~~~~dl~~~~~~~~~~a~~~~~~~ 430 (479)
+|++||.+++.+||+++|.+....
T Consensus 448 ~t~~dl~~~~~~hPt~sE~~~~~~ 471 (486)
T TIGR01423 448 AKISDFYNTIGVHPTSAEELCSMR 471 (486)
T ss_pred CCHHHHhhcccCCCCcHHHHHhhc
Confidence 999999999999999999887773
No 20
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=6.3e-49 Score=404.54 Aligned_cols=410 Identities=19% Similarity=0.209 Sum_probs=292.5
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC---C---CCCCCcccccccCCC------C----CCCCCCccc
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV---A---PYERPALSKGYLLPE------A----PARLPSFHT 67 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~---~---~~~~~~l~~~~~~~~------~----~~~~~~~~~ 67 (479)
+||+||||+||||+.||..+++.|.+ |++||+... . .....|+..++.... . ......+..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~---v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~ 78 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAK---VMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGW 78 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCc
Confidence 58999999999999999999999987 999997310 0 122222222221100 0 000011100
Q ss_pred ccCC----c--------------ccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeC--CC--cEEEeceEEeecCCCc
Q 011700 68 CVGA----N--------------EERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTA--TG--ETISYKILIIATGARA 125 (479)
Q Consensus 68 ~~~~----~--------------~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~--~g--~~~~~d~lviAtG~~~ 125 (479)
.... + ........++..+|+++.+.. .-++ .+++.+. ++ ++++||+||||||++|
T Consensus 79 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a-~f~~--~~~v~v~~~~g~~~~~~~d~lVIATGs~p 155 (484)
T TIGR01438 79 NVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYA-EFVD--KHRIKATNKKGKEKIYSAERFLIATGERP 155 (484)
T ss_pred ccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEE-EEcC--CCEEEEeccCCCceEEEeCEEEEecCCCC
Confidence 0000 0 001223346678999999843 4344 4455542 33 4799999999999999
Q ss_pred ccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHH
Q 011700 126 LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK 205 (479)
Q Consensus 126 ~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~ 205 (479)
+.|++ ||.+ +..++. .++..+ .. .+++++|||+|++|+|+|..|+++|.+||++.+ +.+++. +|++
T Consensus 156 ~~p~i---pG~~-~~~~~~---~~~~~~----~~-~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~~-~d~~ 221 (484)
T TIGR01438 156 RYPGI---PGAK-ELCITS---DDLFSL----PY-CPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRG-FDQD 221 (484)
T ss_pred CCCCC---CCcc-ceeecH---HHhhcc----cc-cCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-cccccc-cCHH
Confidence 88876 5542 122222 222211 11 478999999999999999999999999999997 467764 8999
Q ss_pred HHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC---cEEeccEEEEecCCCCChhhh---hcccccc--cCc
Q 011700 206 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG---NRLPTDMVVVGIGIRPNTSLF---EGQLTLE--KGG 277 (479)
Q Consensus 206 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g---~~i~~D~Vi~a~G~~p~~~l~---~~~~~~~--~g~ 277 (479)
+++.+++.|+++||++++++.+.+++.. ++. ..+.+.++ +++++|.|++++|++||++++ ..++..+ +|+
T Consensus 222 ~~~~l~~~L~~~gV~i~~~~~v~~v~~~-~~~-~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~ 299 (484)
T TIGR01438 222 CANKVGEHMEEHGVKFKRQFVPIKVEQI-EAK-VKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGK 299 (484)
T ss_pred HHHHHHHHHHHcCCEEEeCceEEEEEEc-CCe-EEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCe
Confidence 9999999999999999999999999863 333 24555555 379999999999999999864 3345553 478
Q ss_pred EEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCC-CCCCCCCeEEEeecCcceEeec
Q 011700 278 IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSWQFYG 356 (479)
Q Consensus 278 i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~p~~~~~~~~~~~~~~G 356 (479)
|.||+++||++|+|||+|||+.... .+...|..||+.+++||++.... .++..+|. ..+++++++++|
T Consensus 300 I~Vd~~~~Ts~p~IyA~GDv~~~~~---------~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~--~i~~~p~ia~vG 368 (484)
T TIGR01438 300 IPADEEEQTNVPYIYAVGDILEDKQ---------ELTPVAIQAGRLLAQRLFSGSTVICDYENVPT--TVFTPLEYGACG 368 (484)
T ss_pred EecCCCcccCCCCEEEEEEecCCCc---------cchHHHHHHHHHHHHHHhcCCCcccccccCCe--EEeCCCceeeec
Confidence 9999999999999999999996322 34677999999999999975422 45667786 346778899999
Q ss_pred CCCceEEEE-cc---------C----------C--CCceEEEEc---cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcC
Q 011700 357 DNVGEVVHY-GN---------F----------S--GTTFGAYWV---NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVE 410 (479)
Q Consensus 357 ~~~~~~~~~-~~---------~----------~--~~~~~~~~~---~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~ 410 (479)
+++.++... +. . . ...|.++.+ ++++|||+|++|+++.|+ +.++.||++++|++
T Consensus 369 lte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~~t~~ 448 (484)
T TIGR01438 369 LSEEKAVEKFGEENIEVFHSYFWPLEWTIPSRDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCGLTKK 448 (484)
T ss_pred CCHHHHHHhcCCCcEEEEEeecchhhhHhhCCCccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHH
Confidence 987644211 10 0 0 124555543 479999999999999998 56899999999999
Q ss_pred cHHHHhhcCCCcccccCCCCCCCCCCCCCccccccc
Q 011700 411 DLAELETQGLGFALAVSQKPLPSTPVDGKTVPGLVL 446 (479)
Q Consensus 411 dl~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 446 (479)
||.++...||++++.+.+.-.+++...+..+.+||+
T Consensus 449 dl~~~~~~hPt~sE~~~~~~~~~~~~~~~~~~~~~~ 484 (484)
T TIGR01438 449 DLDNTIGIHPVCAEVFTTLSVTKRSGQDILQQGCCG 484 (484)
T ss_pred HHhhhhcCCCChHHHHHHhhhhhhcCCCchhcccCC
Confidence 999999999999999888766655555555677875
No 21
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=5.1e-49 Score=406.52 Aligned_cols=401 Identities=22% Similarity=0.288 Sum_probs=287.9
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCCcc-cccccCCCC----CCCCCCcccccCC--
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PYERPAL-SKGYLLPEA----PARLPSFHTCVGA-- 71 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~~l-~~~~~~~~~----~~~~~~~~~~~~~-- 71 (479)
|.+.||++||||||||++||.+|+++|++ |+|||++... +-++.|+ ++.++.... ....+.+......
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~---v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~ 77 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLK---TALVEKGKLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPA 77 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCe---EEEEEccCCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCc
Confidence 77789999999999999999999999987 9999986421 1111222 111111000 0000000000000
Q ss_pred -c--------------ccCCCHhHHHHcCcEEEeCceEEEEECC-------CcEEEeCCC--cEEEeceEEeecCCCccc
Q 011700 72 -N--------------EERLTPKWYNEHGIELVLGTRVKSADVR-------RKTLVTATG--ETISYKILIIATGARALK 127 (479)
Q Consensus 72 -~--------------~~~~~~~~~~~~gv~~~~~~~v~~i~~~-------~~~v~~~~g--~~~~~d~lviAtG~~~~~ 127 (479)
+ ......+.+++.+++++.+ .+..+++. ..++.+.+| +++.||+||||||++|..
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~ 156 (472)
T PRK05976 78 LDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVE 156 (472)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCC
Confidence 0 0011224456779999998 67778776 445555566 579999999999999975
Q ss_pred ccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHH
Q 011700 128 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIA 207 (479)
Q Consensus 128 ~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~ 207 (479)
++.. + .+...+++. .++..+ .. .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.
T Consensus 157 ~p~~--~-~~~~~~~~~---~~~~~~----~~-~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~-~~~~~~ 224 (472)
T PRK05976 157 LPGL--P-FDGEYVISS---DEALSL----ET-LPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT-EDAELS 224 (472)
T ss_pred CCCC--C-CCCceEEcc---hHhhCc----cc-cCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc-CCHHHH
Confidence 5431 1 222223322 222221 11 3789999999999999999999999999999999999886 799999
Q ss_pred HHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC--cEEeccEEEEecCCCCChhhhh---cccccccCcEEEcC
Q 011700 208 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTSLFE---GQLTLEKGGIKVTG 282 (479)
Q Consensus 208 ~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~Vi~a~G~~p~~~l~~---~~~~~~~g~i~Vd~ 282 (479)
+.+.+.|+++||++++++.+.+++..+++.+..+.+.+| +++++|.|++++|++|+++.+. .++..++|+|.||+
T Consensus 225 ~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd~ 304 (472)
T PRK05976 225 KEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDD 304 (472)
T ss_pred HHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEECC
Confidence 999999999999999999999997522333434445566 3699999999999999997542 23334568899999
Q ss_pred cccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCC-CCCCCCCCCeEEEeecCcceEeecCCCce
Q 011700 283 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD-KTDKFDYLPFFYSRVFTLSWQFYGDNVGE 361 (479)
Q Consensus 283 ~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~~~~G~~~~~ 361 (479)
++||+.|+|||+|||+..+ +.+..|..||+.|++||.+.. ...++..+|. ..+++.+++.+|+++.+
T Consensus 305 ~l~ts~~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~p~~a~vG~te~~ 372 (472)
T PRK05976 305 FCQTKERHIYAIGDVIGEP----------QLAHVAMAEGEMAAEHIAGKKPRPFDYAAIPA--CCYTDPEVASVGLTEEE 372 (472)
T ss_pred CcccCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCE--EEECcCceEEEeCCHHH
Confidence 9999999999999998654 457789999999999998764 2234445564 55788999999998754
Q ss_pred EEEEc-----------cC-------CCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCC
Q 011700 362 VVHYG-----------NF-------SGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGL 420 (479)
Q Consensus 362 ~~~~~-----------~~-------~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~ 420 (479)
+...| .. ....|.++.+ ++++|||+|++|++++|+ +.++.||+.++|++||.++...||
T Consensus 373 a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hP 452 (472)
T PRK05976 373 AKEAGYDVKVGKFPFAANGKALTYGESDGFVKVVADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTIHPHP 452 (472)
T ss_pred HHHcCCCEEEEEEECCcchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCC
Confidence 32111 00 0134555544 579999999999999998 568999999999999999999999
Q ss_pred CcccccCCC
Q 011700 421 GFALAVSQK 429 (479)
Q Consensus 421 ~~a~~~~~~ 429 (479)
+++|.+...
T Consensus 453 t~~e~~~~~ 461 (472)
T PRK05976 453 TLSEAIQEA 461 (472)
T ss_pred ChHHHHHHH
Confidence 998876543
No 22
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=1.6e-47 Score=414.22 Aligned_cols=383 Identities=25% Similarity=0.370 Sum_probs=313.7
Q ss_pred EEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHcCc
Q 011700 7 YVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEHGI 86 (479)
Q Consensus 7 vvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv 86 (479)
|||||||+||+++|.+|++++.+..+|+||++++..+|.++.++.. +.... .. .+......++++++++
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~-l~g~~--~~--------~~l~~~~~~~~~~~gv 69 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSV-LQGEA--DL--------DDITLNSKDWYEKHGI 69 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHH-HCCCC--CH--------HHccCCCHHHHHHCCC
Confidence 6899999999999999998764456899999999999998877652 21111 10 1112446788999999
Q ss_pred EEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEE
Q 011700 87 ELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAV 166 (479)
Q Consensus 87 ~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vv 166 (479)
+++.+++|+.||+++++|.+.+|+++.||+||||||+.|+.|++ ||.+.++++.++++++++.+++.+. .+++++
T Consensus 70 ~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~i---pG~~~~~v~~~rt~~d~~~i~~~~~--~~k~vv 144 (785)
T TIGR02374 70 TLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPFILPI---PGADKKGVYVFRTIEDLDAIMAMAQ--RFKKAA 144 (785)
T ss_pred EEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcCCCCC---CCCCCCCEEEeCCHHHHHHHHHHhh--cCCeEE
Confidence 99999999999999999999999999999999999999998887 7777788999999999998887665 478999
Q ss_pred EECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC
Q 011700 167 VIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG 246 (479)
Q Consensus 167 VIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g 246 (479)
|||+|++|+|+|..|+++|.+|+++++.++++++.+++++.+.+.+.++++||++++++.++++.. ++.+..+.+.||
T Consensus 145 VVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG 222 (785)
T TIGR02374 145 VIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDG 222 (785)
T ss_pred EECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCC
Confidence 999999999999999999999999999999988778999999999999999999999999999975 445667889999
Q ss_pred cEEeccEEEEecCCCCChhhhhc-ccccccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHH
Q 011700 247 NRLPTDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAV 325 (479)
Q Consensus 247 ~~i~~D~Vi~a~G~~p~~~l~~~-~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa 325 (479)
+++++|.|++++|.+|++++++. ++..+ ++|.||++|||++|+|||+|||+..+...+ ..+..|..||+++|
T Consensus 223 ~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~-ggI~Vd~~~~Ts~p~IyA~GD~a~~~~~~~------gl~~~a~~qa~vaA 295 (785)
T TIGR02374 223 SSLEADLIVMAAGIRPNDELAVSAGIKVN-RGIIVNDSMQTSDPDIYAVGECAEHNGRVY------GLVAPLYEQAKVLA 295 (785)
T ss_pred CEEEcCEEEECCCCCcCcHHHHhcCCccC-CCEEECCCcccCCCCEEEeeecceeCCccc------ccHHHHHHHHHHHH
Confidence 99999999999999999998754 45554 789999999999999999999998765433 35778999999999
Q ss_pred HHHcCCCCCCCCCCC-CeEEEeecCcceEeecCCCc----eEEEEccCCCCceEEEEccCCEEEEEEEeCCCHHHHHHHH
Q 011700 326 AAIMEPDKTDKFDYL-PFFYSRVFTLSWQFYGDNVG----EVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIA 400 (479)
Q Consensus 326 ~~i~~~~~~~~~~~~-p~~~~~~~~~~~~~~G~~~~----~~~~~~~~~~~~~~~~~~~~~~i~G~~~~g~~~~e~~~~~ 400 (479)
.||++... ..|... ......++++.+.+.|.... +.+.+.+.....|.++++++++|+|++++|+. .+...+.
T Consensus 296 ~ni~g~~~-~~~~~~~~~~~lk~~g~~v~s~G~~~~~~~~~~~~~~d~~~~~y~kl~~~~~rLlGavlvgd~-~~~~~L~ 373 (785)
T TIGR02374 296 DHICGVEC-EEYEGSDLSAKLKLLGVDVWSAGDAQETERTTSIKIYDEQKGIYKKLVLSDDKLLGAVLFGDT-SDYGRLL 373 (785)
T ss_pred HHhcCCCC-cCCCCCccceEEEECCcceEecccCCCCCCcEEEEEEcCCCCEEEEEEEECCEEEEEEEECCH-HHHHHHH
Confidence 99998652 234433 33455678888888886432 23334444445688888889999999999964 4677777
Q ss_pred HHHHcCCCcCcHHHHh
Q 011700 401 KATRLQPVVEDLAELE 416 (479)
Q Consensus 401 ~~i~~~~~~~dl~~~~ 416 (479)
.+++.+..+.+...|+
T Consensus 374 ~li~~~~~l~~~~~ll 389 (785)
T TIGR02374 374 DMVLKQADISEDPAII 389 (785)
T ss_pred HHHHcCCCCCcChhhh
Confidence 8888887776544544
No 23
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=6.6e-49 Score=405.18 Aligned_cols=393 Identities=23% Similarity=0.275 Sum_probs=286.7
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCCcc-cccccCCC------CCCCC--------CCccc
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PYERPAL-SKGYLLPE------APARL--------PSFHT 67 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~~l-~~~~~~~~------~~~~~--------~~~~~ 67 (479)
||+|||||||||++||..|+++|++ |+|||+++.. +.++.|. ++.++... ....+ ..+..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~---v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 77 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGAS---VAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGE 77 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCcccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHH
Confidence 7999999999999999999999987 9999987531 1111111 11111000 00000 00000
Q ss_pred cc-C-Cc----c-cCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCC-cEEEeceEEeecCCCcccccccCCCCCCCC
Q 011700 68 CV-G-AN----E-ERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATG-ETISYKILIIATGARALKLEEFGLSGSDAE 139 (479)
Q Consensus 68 ~~-~-~~----~-~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g-~~~~~d~lviAtG~~~~~~~~~g~~g~~~~ 139 (479)
.. . .. . .......+++.+++++.++ +.. .+.+++.+.++ +.+.||+||||||++|+.|++ ||.+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~--~~~~~v~v~~g~~~~~~~~lIiATGs~p~~p~i---~G~~~~ 151 (463)
T TIGR02053 78 LLEGKREVVEELRHEKYEDVLSSYGVDYLRGR-ARF--KDPKTVKVDLGREVRGAKRFLIATGARPAIPPI---PGLKEA 151 (463)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEE-EEE--ccCCEEEEcCCeEEEEeCEEEEcCCCCCCCCCC---CCcccC
Confidence 00 0 00 0 0113355677899999884 443 34677877665 468999999999999998877 555444
Q ss_pred CeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCc
Q 011700 140 NVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV 219 (479)
Q Consensus 140 ~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV 219 (479)
++++..+..+ + .. .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+.+.+.+++.||
T Consensus 152 ~~~~~~~~~~---~----~~-~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV 222 (463)
T TIGR02053 152 GYLTSEEALA---L----DR-IPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR-EEPEISAAVEEALAEEGI 222 (463)
T ss_pred ceECchhhhC---c----cc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc-cCHHHHHHHHHHHHHcCC
Confidence 4444332211 1 11 3689999999999999999999999999999999999886 799999999999999999
Q ss_pred EEEcCCceEEEEEcCCCcEEEEEeC---CCcEEeccEEEEecCCCCChh-h-h-hccccc-ccCcEEEcCcccCCCCCeE
Q 011700 220 KFVKGTVLSSFDVDSNGKVVAVNLR---DGNRLPTDMVVVGIGIRPNTS-L-F-EGQLTL-EKGGIKVTGRLQSSNSSVY 292 (479)
Q Consensus 220 ~i~~~~~v~~i~~~~~g~v~~v~~~---~g~~i~~D~Vi~a~G~~p~~~-l-~-~~~~~~-~~g~i~Vd~~l~t~~~~Iy 292 (479)
+++++++|++++.++++ ..+.+. +++++++|.|++|+|++|+++ + + ..++.. ++|+|.||++|||+.|+||
T Consensus 223 ~i~~~~~V~~i~~~~~~--~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~Vy 300 (463)
T TIGR02053 223 EVVTSAQVKAVSVRGGG--KIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIY 300 (463)
T ss_pred EEEcCcEEEEEEEcCCE--EEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEE
Confidence 99999999999873322 233332 236899999999999999998 3 2 334555 5788999999999999999
Q ss_pred EEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCC-CCCCCCCCCCeEEEeecCcceEeecCCCceEEEEc-----
Q 011700 293 AVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP-DKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG----- 366 (479)
Q Consensus 293 A~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~-~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~----- 366 (479)
|+|||+..+ ..+..|..||+.||.||++. ....++..+|. ..+++++++++|+++.++...|
T Consensus 301 AiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~--~~~~~p~~a~vGlte~~a~~~g~~~~~ 368 (463)
T TIGR02053 301 AAGDVTGGL----------QLEYVAAKEGVVAAENALGGANAKLDLLVIPR--VVFTDPAVASVGLTEAEAQKAGIECDC 368 (463)
T ss_pred EeeecCCCc----------ccHhHHHHHHHHHHHHhcCCCCCccCcCCCCe--EEeccCceEEEeCCHHHHHhcCCCeEE
Confidence 999999864 45778999999999999975 33344555674 5677899999999876542111
Q ss_pred ------c-------CCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCCC
Q 011700 367 ------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQK 429 (479)
Q Consensus 367 ------~-------~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~~ 429 (479)
. .....|.++.+ ++++|||+|++|+++.|+ +.++.||+.++|++||.++..+||++.+.+..+
T Consensus 369 ~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~pt~~e~~~~a 447 (463)
T TIGR02053 369 RTLPLTNVPRARINRDTRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTLHPFPTMAEGLKLA 447 (463)
T ss_pred EEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHHHHH
Confidence 1 01134665554 589999999999999998 568999999999999999998899888766443
No 24
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=7.5e-49 Score=403.81 Aligned_cols=393 Identities=21% Similarity=0.256 Sum_probs=287.6
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCCcc-cccccCCCC----CCCCCCcccccC-------
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PYERPAL-SKGYLLPEA----PARLPSFHTCVG------- 70 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~~l-~~~~~~~~~----~~~~~~~~~~~~------- 70 (479)
+|++|||+||+|+.||..++++|.+ |+|||+++.. +.+..|+ +|.++.... ....+.+.....
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~---v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 78 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGAD---VTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARV 78 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCe---EEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCccccc
Confidence 5899999999999999999999887 9999987531 1111222 222221100 000000000000
Q ss_pred -------------CcccCCCHhHHHHcCcEEEeCceEEEEE--CCCcE--EEeCCCc--EEEeceEEeecCCCccccccc
Q 011700 71 -------------ANEERLTPKWYNEHGIELVLGTRVKSAD--VRRKT--LVTATGE--TISYKILIIATGARALKLEEF 131 (479)
Q Consensus 71 -------------~~~~~~~~~~~~~~gv~~~~~~~v~~i~--~~~~~--v~~~~g~--~~~~d~lviAtG~~~~~~~~~ 131 (479)
........+.+++++++++.+ ++..++ .+.++ +...+|+ ++.||+||||||++|..||.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~- 156 (466)
T PRK07845 79 DLPAVNARVKALAAAQSADIRARLEREGVRVIAG-RGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPT- 156 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCC-
Confidence 000112334566789999998 555533 33444 4445564 79999999999999987654
Q ss_pred CCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHH
Q 011700 132 GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYE 211 (479)
Q Consensus 132 g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~ 211 (479)
++.+.+.+++.+++.+... .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+.+.
T Consensus 157 --~~~~~~~v~~~~~~~~~~~--------~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~ 225 (466)
T PRK07845 157 --AEPDGERILTWRQLYDLDE--------LPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG-EDADAAEVLE 225 (466)
T ss_pred --CCCCCceEEeehhhhcccc--------cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC-CCHHHHHHHH
Confidence 3334455666555433221 3689999999999999999999999999999999999987 7999999999
Q ss_pred HHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhh---hhccccc-ccCcEEEcCcccCC
Q 011700 212 EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL---FEGQLTL-EKGGIKVTGRLQSS 287 (479)
Q Consensus 212 ~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l---~~~~~~~-~~g~i~Vd~~l~t~ 287 (479)
+.|+++||++++++++.+++.++ +.+ .+.+.+|+++++|.|++++|++||+.+ .+.++.. ++|+|.||+++||+
T Consensus 226 ~~L~~~gV~i~~~~~v~~v~~~~-~~~-~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts 303 (466)
T PRK07845 226 EVFARRGMTVLKRSRAESVERTG-DGV-VVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTS 303 (466)
T ss_pred HHHHHCCcEEEcCCEEEEEEEeC-CEE-EEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcccC
Confidence 99999999999999999998633 333 466778889999999999999999985 3345666 56889999999999
Q ss_pred CCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEeecCcceEeecCCCceEEE--
Q 011700 288 NSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTLSWQFYGDNVGEVVH-- 364 (479)
Q Consensus 288 ~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~-- 364 (479)
+|+|||+|||+..+ +++..|..||+.|+.|+++... ...+..+|. ..+.+++++++|+++.++..
T Consensus 304 ~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~vf~~p~~a~vGlte~~a~~~g 371 (466)
T PRK07845 304 VPGIYAAGDCTGVL----------PLASVAAMQGRIAMYHALGEAVSPLRLKTVAS--NVFTRPEIATVGVSQAAIDSGE 371 (466)
T ss_pred CCCEEEEeeccCCc----------cchhHHHHHHHHHHHHHcCCCCCcCCCCCCCE--EEeCCCcceeecCCHHHHHhCC
Confidence 99999999999754 4577899999999999997542 235556774 33346889999998753321
Q ss_pred ---------EccCC-------CCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccc
Q 011700 365 ---------YGNFS-------GTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALA 425 (479)
Q Consensus 365 ---------~~~~~-------~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~ 425 (479)
+.+.. ...|.++.+ ++++|||+|++|+++.|+ +.++.||++++|++||.++...||++++.
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~ 451 (466)
T PRK07845 372 VPARTVMLPLATNPRAKMSGLRDGFVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQTFTVYPSLSGS 451 (466)
T ss_pred CceEEEEEecccCchhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCcCCCCCHHHH
Confidence 11110 134555554 689999999999999998 56899999999999999998888888775
Q ss_pred cC
Q 011700 426 VS 427 (479)
Q Consensus 426 ~~ 427 (479)
+.
T Consensus 452 ~~ 453 (466)
T PRK07845 452 IT 453 (466)
T ss_pred HH
Confidence 53
No 25
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=8.5e-49 Score=405.44 Aligned_cols=414 Identities=19% Similarity=0.215 Sum_probs=294.3
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC----CC--CCCCCcccccccCCCC----------C-CCCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP----VA--PYERPALSKGYLLPEA----------P-ARLP 63 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~----~~--~~~~~~l~~~~~~~~~----------~-~~~~ 63 (479)
|..+||++||||||||++||.+|+++|.+ |+|||+++ .. .+...|+..++..... . ....
T Consensus 2 ~~~~yDviVIG~GpaG~~AA~~aa~~G~~---V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~ 78 (499)
T PTZ00052 2 LTFMYDLVVIGGGSGGMAAAKEAAAHGKK---VALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQ 78 (499)
T ss_pred CccccCEEEECCCHHHHHHHHHHHhCCCe---EEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHh
Confidence 44469999999999999999999999987 99999632 10 1222222221111000 0 0000
Q ss_pred CcccccC-----Cccc-----------CCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCC---CcEEEeceEEeecCCC
Q 011700 64 SFHTCVG-----ANEE-----------RLTPKWYNEHGIELVLGTRVKSADVRRKTLVTAT---GETISYKILIIATGAR 124 (479)
Q Consensus 64 ~~~~~~~-----~~~~-----------~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~---g~~~~~d~lviAtG~~ 124 (479)
.+..... .... ......++..+|+++.+. +.. .+.++|.+.+ ++.++||+||||||++
T Consensus 79 ~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~-a~~--~~~~~v~v~~~~~~~~i~~d~lIIATGs~ 155 (499)
T PTZ00052 79 MYGWKTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGL-AKL--KDEHTVSYGDNSQEETITAKYILIATGGR 155 (499)
T ss_pred cCCCCCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEE-EEE--ccCCEEEEeeCCCceEEECCEEEEecCCC
Confidence 0000000 0000 011122334678888773 333 3456666532 3579999999999999
Q ss_pred ccccc-ccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCC
Q 011700 125 ALKLE-EFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT 203 (479)
Q Consensus 125 ~~~~~-~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~ 203 (479)
|+.|+ + +|.+. ..+ +..+...+ .. .+++++|||+|++|+|+|..|+++|.+||++.+. .+++. ++
T Consensus 156 p~~p~~i---~G~~~-~~~---~~~~~~~~----~~-~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~~-~d 221 (499)
T PTZ00052 156 PSIPEDV---PGAKE-YSI---TSDDIFSL----SK-DPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPLRG-FD 221 (499)
T ss_pred CCCCCCC---CCccc-eee---cHHHHhhh----hc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-ccccc-CC
Confidence 98774 4 55431 122 22222221 11 4789999999999999999999999999999874 56664 89
Q ss_pred HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhh---ccccc-ccCcEE
Q 011700 204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE---GQLTL-EKGGIK 279 (479)
Q Consensus 204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~---~~~~~-~~g~i~ 279 (479)
+++++.+.+.|+++||++++++.+.+++..+ +. ..+.+.+|+++++|.|++++|++||++++. .++.. ++|++.
T Consensus 222 ~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~-~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii 299 (499)
T PTZ00052 222 RQCSEKVVEYMKEQGTLFLEGVVPINIEKMD-DK-IKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKII 299 (499)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC-Ce-EEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEe
Confidence 9999999999999999999999999998633 33 346777888999999999999999998753 34555 467777
Q ss_pred EcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCC-CCCCCCCeEEEeecCcceEeecCC
Q 011700 280 VTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSWQFYGDN 358 (479)
Q Consensus 280 Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~p~~~~~~~~~~~~~~G~~ 358 (479)
+++. ||++|+|||+|||+.... .++..|.+||+.+++||++.... .++..+|+.. +++++++++|++
T Consensus 300 ~~~~-~Ts~p~IyAiGDv~~~~~---------~l~~~A~~~g~~aa~ni~g~~~~~~~~~~~p~~i--ft~p~ia~vGlt 367 (499)
T PTZ00052 300 APND-CTNIPNIFAVGDVVEGRP---------ELTPVAIKAGILLARRLFKQSNEFIDYTFIPTTI--FTPIEYGACGYS 367 (499)
T ss_pred eCCC-cCCCCCEEEEEEecCCCc---------ccHHHHHHHHHHHHHHHhCCCCCcCccccCCeEE--ecCCcceeecCC
Confidence 7777 999999999999996321 45778999999999999975432 4566678633 567889999988
Q ss_pred CceEEEE-cc---------C-------------------------CCCceEEEEc--c-CCEEEEEEEeCCCHHHH-HHH
Q 011700 359 VGEVVHY-GN---------F-------------------------SGTTFGAYWV--N-KGRLVGSFLEGGTKEEY-EAI 399 (479)
Q Consensus 359 ~~~~~~~-~~---------~-------------------------~~~~~~~~~~--~-~~~i~G~~~~g~~~~e~-~~~ 399 (479)
+.++... +. . ....|.++.+ + +++|||+|++|++|+|+ +.+
T Consensus 368 e~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~~ 447 (499)
T PTZ00052 368 SEAAIAKYGEDDIEEYLQEFNTLEIAAVHREKHERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGF 447 (499)
T ss_pred HHHHHHhcCCCCEEEEEeecccchhhccccccccccccccccccccCCceEEEEEecCCCCEEEEEEEECCCHHHHHHHH
Confidence 7644311 10 0 0134666544 2 69999999999999998 568
Q ss_pred HHHHHcCCCcCcHHHHhhcCCCcccccCCCCCCCCCCCCCc-ccccccCC
Q 011700 400 AKATRLQPVVEDLAELETQGLGFALAVSQKPLPSTPVDGKT-VPGLVLGK 448 (479)
Q Consensus 400 ~~~i~~~~~~~dl~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~ 448 (479)
+.||+.++|++||.+++..||+++|.+..+.++.+||.... ..||-++|
T Consensus 448 ~~ai~~~~t~~~l~~~~~~hPt~sE~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (499)
T PTZ00052 448 SLALKLGAKKSDFDSMIGIHPTDAEVFMNLSVTRRSGESFAAKGGCGGGK 497 (499)
T ss_pred HHHHHCCCCHHHHhcccccCCCCchhhEEEEeeccCCCChhhcccccccc
Confidence 99999999999999999999999999999989999987777 55774443
No 26
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1e-48 Score=402.80 Aligned_cols=398 Identities=19% Similarity=0.217 Sum_probs=279.7
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC---CCCCCcc-cccccCCCCC----C--CCCCcccccCC-
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA---PYERPAL-SKGYLLPEAP----A--RLPSFHTCVGA- 71 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~---~~~~~~l-~~~~~~~~~~----~--~~~~~~~~~~~- 71 (479)
++||++||||||||++||..++++|++ |+|||+.... +.++.|+ +|.++..... . ..+.+......
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~---V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~ 78 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGLK---VACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPT 78 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCc
Confidence 459999999999999999999999987 9999974211 1222222 2221111000 0 00111000000
Q ss_pred -cc--------------cCCCHhHHHHcCcEEEeCceEEEEECCCc-EEEeCCCc--EEEeceEEeecCCCcccccccCC
Q 011700 72 -NE--------------ERLTPKWYNEHGIELVLGTRVKSADVRRK-TLVTATGE--TISYKILIIATGARALKLEEFGL 133 (479)
Q Consensus 72 -~~--------------~~~~~~~~~~~gv~~~~~~~v~~i~~~~~-~v~~~~g~--~~~~d~lviAtG~~~~~~~~~g~ 133 (479)
+. ......++++.+++++.+. . .++.+.+ .+...+++ +++||+||||||++|.. +
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a-~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~--i--- 151 (466)
T PRK06115 79 LNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGW-G-RLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTP--L--- 151 (466)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-E-EEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCC--C---
Confidence 00 0011233456689999874 2 3333322 23334553 69999999999999853 3
Q ss_pred CCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHH
Q 011700 134 SGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEY 213 (479)
Q Consensus 134 ~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~ 213 (479)
||.+.++...+++ .++.. +. ..+++++|||+|++|+|+|..|.++|.+||++++.+++++. +++++.+.+.+.
T Consensus 152 pg~~~~~~~~~~~-~~~~~----~~-~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~-~d~~~~~~l~~~ 224 (466)
T PRK06115 152 PGVTIDNQRIIDS-TGALS----LP-EVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG-TDTETAKTLQKA 224 (466)
T ss_pred CCCCCCCCeEECH-HHHhC----Cc-cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-CCHHHHHHHHHH
Confidence 4433333333322 22211 11 14799999999999999999999999999999999999986 899999999999
Q ss_pred HHhCCcEEEcCCceEEEEEcCCCcEEEEEe-CC--CcEEeccEEEEecCCCCChhhhh---cccccccCcEEEcCcccCC
Q 011700 214 YKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-RD--GNRLPTDMVVVGIGIRPNTSLFE---GQLTLEKGGIKVTGRLQSS 287 (479)
Q Consensus 214 l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~-~~--g~~i~~D~Vi~a~G~~p~~~l~~---~~~~~~~g~i~Vd~~l~t~ 287 (479)
|++.||++++++.+++++.++++....+.. .+ ++++++|.|++++|++||++.+. .++..+++++.||+++||+
T Consensus 225 l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~vd~~~~Ts 304 (466)
T PRK06115 225 LTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLANDHHRTS 304 (466)
T ss_pred HHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCEEECCCeecC
Confidence 999999999999999998633332222322 12 35799999999999999998542 2455544558899999999
Q ss_pred CCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEEEE--
Q 011700 288 NSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHY-- 365 (479)
Q Consensus 288 ~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~-- 365 (479)
+|+|||+|||+..+ .++..|.+||+.+++||++.....++..+|... +.+++++++|+++.++...
T Consensus 305 ~~~IyA~GD~~~~~----------~la~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~--~t~p~ia~vGlte~~a~~~g~ 372 (466)
T PRK06115 305 VPGVWVIGDVTSGP----------MLAHKAEDEAVACIERIAGKAGEVNYGLIPGVI--YTRPEVATVGKTEEQLKAEGR 372 (466)
T ss_pred CCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEE--ECCcccEEeeCCHHHHHHCCC
Confidence 99999999999764 357789999999999999865445667788643 4567899999987644211
Q ss_pred ---------ccC-------CCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCccccc
Q 011700 366 ---------GNF-------SGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAV 426 (479)
Q Consensus 366 ---------~~~-------~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~ 426 (479)
.+. ....|.++.+ ++++|||+|++|+++.|+ +.++.||+.++|++||.++..+||+++|.+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~dl~~~~~~hPt~~e~~ 452 (466)
T PRK06115 373 AYKVGKFPFTANSRAKINHETEGFAKILADARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRSEAL 452 (466)
T ss_pred CEEEEEEecccChhhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCccCCCChHHHH
Confidence 110 1134555544 689999999999999998 568999999999999999999999998866
Q ss_pred CCC
Q 011700 427 SQK 429 (479)
Q Consensus 427 ~~~ 429 (479)
...
T Consensus 453 ~~a 455 (466)
T PRK06115 453 RQA 455 (466)
T ss_pred HHH
Confidence 443
No 27
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.2e-48 Score=403.17 Aligned_cols=395 Identities=23% Similarity=0.289 Sum_probs=280.4
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCCcc-cccccCCCCCC-----CCCCcccccCCc
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PYERPAL-SKGYLLPEAPA-----RLPSFHTCVGAN 72 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~~l-~~~~~~~~~~~-----~~~~~~~~~~~~ 72 (479)
||++||++||||||||++||.+|+++|.+ |+|||++... +.+..++ ++.++...... ....+.......
T Consensus 1 ~~~~~DvvIIG~GpaG~~AA~~aa~~G~~---V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~ 77 (466)
T PRK07818 1 MMTHYDVVVLGAGPGGYVAAIRAAQLGLK---TAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVT 77 (466)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcc
Confidence 77789999999999999999999999987 9999987421 1122222 11111100000 000000000000
Q ss_pred c----------------cCCCHhHHHHcCcEEEeCceEEEEECCCcEEEe--CCC--cEEEeceEEeecCCCcccccccC
Q 011700 73 E----------------ERLTPKWYNEHGIELVLGTRVKSADVRRKTLVT--ATG--ETISYKILIIATGARALKLEEFG 132 (479)
Q Consensus 73 ~----------------~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~--~~g--~~~~~d~lviAtG~~~~~~~~~g 132 (479)
. .......++..+|+.+.+. ... .+.+++.+ .+| ++++||+||||||++|+.||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~-~~~--~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p--- 151 (466)
T PRK07818 78 FDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGY-GTF--TDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLP--- 151 (466)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEE--cCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCCC---
Confidence 0 0001112234577777663 222 33444443 344 47999999999999997643
Q ss_pred CCCCC-CCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHH
Q 011700 133 LSGSD-AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYE 211 (479)
Q Consensus 133 ~~g~~-~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~ 211 (479)
|.+ ...+++..+ . + .....+++++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++.+.+.
T Consensus 152 --g~~~~~~v~~~~~---~--~---~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~l~ 220 (466)
T PRK07818 152 --GTSLSENVVTYEE---Q--I---LSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN-EDAEVSKEIA 220 (466)
T ss_pred --CCCCCCcEEchHH---H--h---ccccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc-cCHHHHHHHH
Confidence 322 123443221 1 1 11124799999999999999999999999999999999999987 7999999999
Q ss_pred HHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC--CC--cEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcCc
Q 011700 212 EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--DG--NRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGR 283 (479)
Q Consensus 212 ~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~--~g--~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~ 283 (479)
+.|+++||+++++++|++++.+ ++.+ .+.+. +| +++++|.|++++|++|+++++ ..++.. ++|+|.||++
T Consensus 221 ~~l~~~gV~i~~~~~v~~i~~~-~~~~-~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~ 298 (466)
T PRK07818 221 KQYKKLGVKILTGTKVESIDDN-GSKV-TVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDY 298 (466)
T ss_pred HHHHHCCCEEEECCEEEEEEEe-CCeE-EEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCC
Confidence 9999999999999999999863 3322 34433 56 479999999999999999843 345655 5678999999
Q ss_pred ccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCC-C-CCCCCCeEEEeecCcceEeecCCCce
Q 011700 284 LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT-D-KFDYLPFFYSRVFTLSWQFYGDNVGE 361 (479)
Q Consensus 284 l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~-~-~~~~~p~~~~~~~~~~~~~~G~~~~~ 361 (479)
+||++|+|||+|||+..+ +++..|..||+.||.||++.... . ++..+|. ..+++++++++|+++.+
T Consensus 299 ~~Ts~p~IyAiGD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~--~~~~~p~~a~vGlte~~ 366 (466)
T PRK07818 299 MRTNVPHIYAIGDVTAKL----------QLAHVAEAQGVVAAETIAGAETLELGDYRMMPR--ATFCQPQVASFGLTEEQ 366 (466)
T ss_pred cccCCCCEEEEeecCCCc----------ccHhHHHHHHHHHHHHHcCCCCCccCccCCCCe--EEECCCCeEEEeCCHHH
Confidence 999999999999999753 45778999999999999976432 2 5666775 45678899999998765
Q ss_pred EEEEc-----------cC-------CCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCC
Q 011700 362 VVHYG-----------NF-------SGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGL 420 (479)
Q Consensus 362 ~~~~~-----------~~-------~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~ 420 (479)
+...| +. ....|.++.+ ++++|||+|++|++++|+ +.++.||+.++|++||.++...||
T Consensus 367 a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hP 446 (466)
T PRK07818 367 AREEGYDVKVAKFPFTANGKAHGLGDPTGFVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNVHTHP 446 (466)
T ss_pred HHhCCCcEEEEEEECCccchhhhcCCCCeEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCccCCC
Confidence 42211 10 1134555544 689999999999999998 568999999999999999998999
Q ss_pred CcccccCCC
Q 011700 421 GFALAVSQK 429 (479)
Q Consensus 421 ~~a~~~~~~ 429 (479)
+++|.+.+.
T Consensus 447 t~~e~~~~~ 455 (466)
T PRK07818 447 TLSEALKEA 455 (466)
T ss_pred chHHHHHHH
Confidence 998876543
No 28
>PLN02546 glutathione reductase
Probab=100.00 E-value=1.4e-48 Score=404.98 Aligned_cols=392 Identities=17% Similarity=0.210 Sum_probs=287.9
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC-------CCCCCCCccccccc------CC----CCCCCCCCcc
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP-------VAPYERPALSKGYL------LP----EAPARLPSFH 66 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~-------~~~~~~~~l~~~~~------~~----~~~~~~~~~~ 66 (479)
+|||+|||+||||+.||..|+++|.+ |+|||+.. ...+...|+..++. .. ........+.
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~---V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g 155 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGAS---AAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFG 155 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcC
Confidence 58999999999999999999999998 99999620 11222333322221 10 0000001111
Q ss_pred cccCC------------------cccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccc
Q 011700 67 TCVGA------------------NEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKL 128 (479)
Q Consensus 67 ~~~~~------------------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~ 128 (479)
..... .....+...+++.|++++.+ ++..+++ +++.+ +|+++.||+||||||++|..|
T Consensus 156 ~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G-~a~~vd~--~~V~v-~G~~~~~D~LVIATGs~p~~P 231 (558)
T PLN02546 156 WKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEG-RGKIVDP--HTVDV-DGKLYTARNILIAVGGRPFIP 231 (558)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEccC--CEEEE-CCEEEECCEEEEeCCCCCCCC
Confidence 00000 00112334456789999998 5666665 45655 577899999999999999988
Q ss_pred cccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHH
Q 011700 129 EEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIAS 208 (479)
Q Consensus 129 ~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~ 208 (479)
++ ||.+ .++ +..++..+ . ..+++++|||+|++|+|+|..|.++|.+|+++++.+++++. +++++.+
T Consensus 232 ~I---pG~~--~v~---~~~~~l~~----~-~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~-~d~~~~~ 297 (558)
T PLN02546 232 DI---PGIE--HAI---DSDAALDL----P-SKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG-FDEEVRD 297 (558)
T ss_pred CC---CChh--hcc---CHHHHHhc----c-ccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc-cCHHHHH
Confidence 77 5532 222 22222211 1 14789999999999999999999999999999999998885 8999999
Q ss_pred HHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcCcc
Q 011700 209 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRL 284 (479)
Q Consensus 209 ~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~l 284 (479)
.+.+.|+++||++++++.+.+++..+++.+ .+.+.+++...+|.|++++|++||++++ +.++.. ++|+|.||+++
T Consensus 298 ~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l 376 (558)
T PLN02546 298 FVAEQMSLRGIEFHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYS 376 (558)
T ss_pred HHHHHHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCc
Confidence 999999999999999999999986444433 4555555555689999999999999853 345666 56889999999
Q ss_pred cCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEeecCcceEeecCCCceEE
Q 011700 285 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTLSWQFYGDNVGEVV 363 (479)
Q Consensus 285 ~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~ 363 (479)
||++|+|||+|||+..+ .+++.|..||+.+++||++... ..+|..+|+. .+...+++++|+++.++.
T Consensus 377 ~Ts~p~IYAaGDv~~~~----------~l~~~A~~~g~~~a~~i~g~~~~~~~~~~vp~~--vft~Peia~VGlte~eA~ 444 (558)
T PLN02546 377 RTSVPSIWAVGDVTDRI----------NLTPVALMEGGALAKTLFGNEPTKPDYRAVPSA--VFSQPPIGQVGLTEEQAI 444 (558)
T ss_pred eeCCCCEEEeeccCCCc----------ccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEE--EeCCchHhhccCCHHHHH
Confidence 99999999999999754 3567899999999999998543 2467778852 233457899999887543
Q ss_pred EEcc-----------C-------CCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCc
Q 011700 364 HYGN-----------F-------SGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGF 422 (479)
Q Consensus 364 ~~~~-----------~-------~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~ 422 (479)
..+. . ....|.++.+ ++++|||+|++|+++.|+ +.++.||++++|++||.+++..||++
T Consensus 445 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ILGa~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPT~ 524 (558)
T PLN02546 445 EEYGDVDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATVGIHPTA 524 (558)
T ss_pred HcCCCeEEEEEecccchhhhhCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCh
Confidence 2110 0 1134665554 689999999999999998 56899999999999999999999999
Q ss_pred ccccCCC
Q 011700 423 ALAVSQK 429 (479)
Q Consensus 423 a~~~~~~ 429 (479)
+|.+...
T Consensus 525 ~E~~~~~ 531 (558)
T PLN02546 525 AEEFVTM 531 (558)
T ss_pred HHHHHHH
Confidence 9877655
No 29
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=7.7e-49 Score=401.83 Aligned_cols=392 Identities=18% Similarity=0.219 Sum_probs=284.4
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccc------cCCCCC-CCCCCccccc---CCc
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGY------LLPEAP-ARLPSFHTCV---GAN 72 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~------~~~~~~-~~~~~~~~~~---~~~ 72 (479)
++||||||||||||++||..|+++|++ |+|||+++.. +...|+..++ +..... .++....... ...
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~---V~liE~~~~~-~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKK---VALVEESKAM-YGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSR 77 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCE---EEEEecCCcc-cceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHH
Confidence 469999999999999999999999987 9999998632 2222221111 110000 0000000000 000
Q ss_pred ccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCC---CcEEEeceEEeecCCCcccccccCCCCCC-CCCeEEecCHH
Q 011700 73 EERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTAT---GETISYKILIIATGARALKLEEFGLSGSD-AENVCYLRDLA 148 (479)
Q Consensus 73 ~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~---g~~~~~d~lviAtG~~~~~~~~~g~~g~~-~~~v~~~~~~~ 148 (479)
......+.+.+.+|+++.++ +.. .+++++.+.+ ..++.||+||||||++|+.|++ ||.+ ..++++..++.
T Consensus 78 ~~~~~~~~~~~~gV~~~~g~-~~~--~~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i---~G~~~~~~v~~~~~~~ 151 (438)
T PRK07251 78 LRGKNYAMLAGSGVDLYDAE-AHF--VSNKVIEVQAGDEKIELTAETIVINTGAVSNVLPI---PGLADSKHVYDSTGIQ 151 (438)
T ss_pred HHHHHHHHHHhCCCEEEEEE-EEE--ccCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCC---CCcCCCCcEEchHHHh
Confidence 01112345667899999874 332 3566666543 2479999999999999998887 5542 34455433222
Q ss_pred HHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceE
Q 011700 149 DANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLS 228 (479)
Q Consensus 149 ~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~ 228 (479)
.+ .. .+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+.++++||+++++++++
T Consensus 152 ---~~----~~-~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~GI~i~~~~~V~ 222 (438)
T PRK07251 152 ---SL----ET-LPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR-EEPSVAALAKQYMEEDGITFLLNAHTT 222 (438)
T ss_pred ---cc----hh-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-CCHHHHHHHHHHHHHcCCEEEcCCEEE
Confidence 21 11 4789999999999999999999999999999999999886 689999999999999999999999999
Q ss_pred EEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhh---ccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccc
Q 011700 229 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE---GQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 304 (479)
Q Consensus 229 ~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~---~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~ 304 (479)
+++. +++.+ .+. .+++++++|.|++|+|++|+++.+. .++.. ++|+|.||+++||+.|+|||+|||++.+.
T Consensus 223 ~i~~-~~~~v-~v~-~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~~~~~-- 297 (438)
T PRK07251 223 EVKN-DGDQV-LVV-TEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVNGGPQ-- 297 (438)
T ss_pred EEEe-cCCEE-EEE-ECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc--
Confidence 9986 33333 233 4567899999999999999987543 34444 56889999999999999999999997653
Q ss_pred cCceeecccHHHHHHHHHHHHHHHcCCCC--CCCCCCCCeEEEeecCcceEeecCCCceEEEEc-----------cCC--
Q 011700 305 LGETRRLEHVDSARKSAKHAVAAIMEPDK--TDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-----------NFS-- 369 (479)
Q Consensus 305 ~g~~~~~~~~~~A~~~g~~aa~~i~~~~~--~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~-----------~~~-- 369 (479)
....|..+|+.++.++++... ...+..+|+ ..+++.+++.+|+++.++...| ...
T Consensus 298 --------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~ 367 (438)
T PRK07251 298 --------FTYISLDDFRIVFGYLTGDGSYTLEDRGNVPT--TMFITPPLSQVGLTEKEAKEAGLPYAVKELLVAAMPRA 367 (438)
T ss_pred --------cHhHHHHHHHHHHHHHcCCCCccccccCCCCE--EEECCCceEeeeCCHHHHHhcCCCeEEEEEECCcchhh
Confidence 355678899999999987532 134456775 3568999999999876543221 000
Q ss_pred -----CCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCC
Q 011700 370 -----GTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQ 428 (479)
Q Consensus 370 -----~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~ 428 (479)
...|.++.+ ++++|||+|++|+++.|+ +.++.||++++|++||.++...||+++|.+.+
T Consensus 368 ~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~ 434 (438)
T PRK07251 368 HVNNDLRGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQIFTHPTMAENLND 434 (438)
T ss_pred hhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHHH
Confidence 123555544 689999999999999998 56899999999999999999889998876543
No 30
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=3.8e-48 Score=396.32 Aligned_cols=389 Identities=20% Similarity=0.251 Sum_probs=282.3
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCCcc-cccccCCC------------CCC-CCCCccc
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PYERPAL-SKGYLLPE------------APA-RLPSFHT 67 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~~l-~~~~~~~~------------~~~-~~~~~~~ 67 (479)
+||+|||||||||..||..+ .|.+ |+|||++... +.++.|+ +|.++... ... ..+.+.+
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~--~G~~---V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 75 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--ADKR---IAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRW 75 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH--CCCe---EEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCH
Confidence 48999999999999988663 4776 9999987531 2233232 22211100 000 0000000
Q ss_pred -----cc---CCcccC-CCHhH-HHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCC
Q 011700 68 -----CV---GANEER-LTPKW-YNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSD 137 (479)
Q Consensus 68 -----~~---~~~~~~-~~~~~-~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~ 137 (479)
.. -..... ....+ ++..|++++.+.... + ++++|.+.++++++||+||||||++|+.|++ +|.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~-~--~~~~V~v~~g~~~~~d~lViATGs~p~~p~i---~g~~ 149 (451)
T PRK07846 76 PDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARF-I--GPKTLRTGDGEEITADQVVIAAGSRPVIPPV---IADS 149 (451)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEE-e--cCCEEEECCCCEEEeCEEEEcCCCCCCCCCC---CCcC
Confidence 00 000001 12233 567899999984433 3 5788888878889999999999999998887 5543
Q ss_pred CCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhC
Q 011700 138 AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSK 217 (479)
Q Consensus 138 ~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~ 217 (479)
...+++ .+++..+. . .+++++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++.+.+.+.+ +.
T Consensus 150 ~~~~~~---~~~~~~l~----~-~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~~~~l~~l~-~~ 219 (451)
T PRK07846 150 GVRYHT---SDTIMRLP----E-LPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH-LDDDISERFTELA-SK 219 (451)
T ss_pred CccEEc---hHHHhhhh----h-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHHH-hc
Confidence 333333 33333221 1 3799999999999999999999999999999999998875 8999998887655 56
Q ss_pred CcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhh---ccccc-ccCcEEEcCcccCCCCCeEE
Q 011700 218 GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE---GQLTL-EKGGIKVTGRLQSSNSSVYA 293 (479)
Q Consensus 218 GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~---~~~~~-~~g~i~Vd~~l~t~~~~IyA 293 (479)
+|++++++++++++.+ ++.+ .+.+.+|+++++|.|++++|++|+++++. .++.. ++|+|.||+++||++|+|||
T Consensus 220 ~v~i~~~~~v~~i~~~-~~~v-~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA 297 (451)
T PRK07846 220 RWDVRLGRNVVGVSQD-GSGV-TLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFA 297 (451)
T ss_pred CeEEEeCCEEEEEEEc-CCEE-EEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcccCCCCEEE
Confidence 8999999999999863 3333 46677888999999999999999998753 35666 57889999999999999999
Q ss_pred EeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCC--CCCCCCCCeEEEeecCcceEeecCCCceEEEEc-----
Q 011700 294 VGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK--TDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG----- 366 (479)
Q Consensus 294 ~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~--~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~----- 366 (479)
+|||+..+ ++...|.+||+++++||++... ..++..+|.. .+.+++++++|+++.++...|
T Consensus 298 ~GD~~~~~----------~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~--if~~p~ia~vGlte~~a~~~g~~~~~ 365 (451)
T PRK07846 298 LGDVSSPY----------QLKHVANHEARVVQHNLLHPDDLIASDHRFVPAA--VFTHPQIASVGLTENEARAAGLDITV 365 (451)
T ss_pred EeecCCCc----------cChhHHHHHHHHHHHHHcCCCCccccCCCCCCeE--EECCCCcEeEeCCHHHHHhcCCCEEE
Confidence 99999864 3456789999999999997532 2466778864 345788999999886543211
Q ss_pred ------c-------CCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHh-hcCCCcccccC
Q 011700 367 ------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELE-TQGLGFALAVS 427 (479)
Q Consensus 367 ------~-------~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~-~~~~~~a~~~~ 427 (479)
+ .....|.++.+ +++||||+|++|+++.|+ +.++.||++++|++||.++. ..||++++.+.
T Consensus 366 ~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~ 443 (451)
T PRK07846 366 KVQNYGDVAYGWAMEDTTGFVKLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMARGQYWIHPALPEVVE 443 (451)
T ss_pred EEEecCcchhhhhCCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCCccCCcHHHHHH
Confidence 1 01134555544 689999999999999998 66899999999999999865 57888877553
No 31
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=1.3e-46 Score=378.21 Aligned_cols=362 Identities=22% Similarity=0.313 Sum_probs=287.4
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhH
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKW 80 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (479)
|+ +++||||||+||+++|..|++++ +..+|+||++++..+|++|.++..+........+ ......++
T Consensus 1 m~--~~vvIiG~G~AG~~~a~~lr~~~-~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~----------~~~~~~~~ 67 (377)
T PRK04965 1 MS--NGIVIIGSGFAARQLVKNIRKQD-AHIPITLITADSGDEYNKPDLSHVFSQGQRADDL----------TRQSAGEF 67 (377)
T ss_pred CC--CCEEEECCcHHHHHHHHHHHhhC-cCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHh----------hcCCHHHH
Confidence 64 69999999999999999998864 4578999999998899888775433211111000 01124567
Q ss_pred HHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcC
Q 011700 81 YNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSC 160 (479)
Q Consensus 81 ~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~ 160 (479)
+++++++++.+++|.+++++++++.+ ++.++.||+||||||++|..|++ +|.+. ++.++++.++..+...+.
T Consensus 68 ~~~~gv~~~~~~~V~~id~~~~~v~~-~~~~~~yd~LVlATG~~~~~p~i---~G~~~--v~~~~~~~~~~~~~~~~~-- 139 (377)
T PRK04965 68 AEQFNLRLFPHTWVTDIDAEAQVVKS-QGNQWQYDKLVLATGASAFVPPI---PGREL--MLTLNSQQEYRAAETQLR-- 139 (377)
T ss_pred HHhCCCEEECCCEEEEEECCCCEEEE-CCeEEeCCEEEECCCCCCCCCCC---CCCce--EEEECCHHHHHHHHHHhh--
Confidence 78899999999899999999888886 56689999999999999988876 66443 888889888887776664
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 240 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~ 240 (479)
.+++++|||+|++|+|+|..|.+.|.+|+++++.++++++.+++++.+.+.+.+++.||++++++.+.+++.+ ++ ...
T Consensus 140 ~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~-~~~ 217 (377)
T PRK04965 140 DAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKT-DS-GIR 217 (377)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEcc-CC-EEE
Confidence 4789999999999999999999999999999999999887779999999999999999999999999999863 22 235
Q ss_pred EEeCCCcEEeccEEEEecCCCCChhhhhc-ccccccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHH
Q 011700 241 VNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARK 319 (479)
Q Consensus 241 v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~ 319 (479)
+.+.+|+++++|.|++|+|.+|++.+++. ++..++ +|.||++|||++|+|||+|||+..+.. ..+.+..|..
T Consensus 218 v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~~-gi~vd~~l~ts~~~VyA~GD~a~~~~~------~~~~~~~a~~ 290 (377)
T PRK04965 218 ATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVNR-GIVVDSYLQTSAPDIYALGDCAEINGQ------VLPFLQPIQL 290 (377)
T ss_pred EEEcCCcEEECCEEEECcCCCcchHHHHHCCCCcCC-CEEECCCcccCCCCEEEeeecEeECCc------eeehHHHHHH
Confidence 77889999999999999999999988754 455554 599999999999999999999986532 1245677899
Q ss_pred HHHHHHHHHcCCCCCCCCCCCC-eEEEeecCcceEeecCCCceE--EEEccCCCCceEEEEccCCEEEEEEEeCCCHH
Q 011700 320 SAKHAVAAIMEPDKTDKFDYLP-FFYSRVFTLSWQFYGDNVGEV--VHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKE 394 (479)
Q Consensus 320 ~g~~aa~~i~~~~~~~~~~~~p-~~~~~~~~~~~~~~G~~~~~~--~~~~~~~~~~~~~~~~~~~~i~G~~~~g~~~~ 394 (479)
||+.+|+||++... .|...+ .....++++++.++|...++. ....+.....|.+++.++|+|+|+.++|+...
T Consensus 291 ~g~~~a~n~~g~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~g~~~~ 366 (377)
T PRK04965 291 SAMALAKNLLGQNT--PLKLPAMLVKVKTPELPLQLAGETQRQDLRWQINAESQGMVAKGVDEAGQLRAFVVSEDRMK 366 (377)
T ss_pred HHHHHHHHhcCCCc--ccccCCccEEEecCceeeEECCCCCCCCceEEEEeCCCCeEEEEEccCCcEEEEEEEChhHH
Confidence 99999999998763 444433 234467788899999764321 11122333568888889999999999997653
No 32
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=1.8e-47 Score=401.14 Aligned_cols=395 Identities=19% Similarity=0.233 Sum_probs=281.9
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC--C--CCCCCCcc-cccccCCCC-------CCCCCCcccc---
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP--V--APYERPAL-SKGYLLPEA-------PARLPSFHTC--- 68 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~--~--~~~~~~~l-~~~~~~~~~-------~~~~~~~~~~--- 68 (479)
+||++|||+||||+.||..++++|.+ |+|||+.. . .+.++.|+ +|.++.... ....+.+...
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~k---V~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~ 192 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLK---VIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNA 192 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeecc
Confidence 68999999999999999999999998 99999752 1 11222222 222211100 0000011000
Q ss_pred --------------c-CC---c--------------ccCCCHhHHHHcC-------cEEEeCceEEEEECCCcEEEe-CC
Q 011700 69 --------------V-GA---N--------------EERLTPKWYNEHG-------IELVLGTRVKSADVRRKTLVT-AT 108 (479)
Q Consensus 69 --------------~-~~---~--------------~~~~~~~~~~~~g-------v~~~~~~~v~~i~~~~~~v~~-~~ 108 (479)
. .. + ........+++.+ ++++.+...+ .+.+++.+ .+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f---~~~~~v~v~~~ 269 (659)
T PTZ00153 193 FKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHI---VDKNTIKSEKS 269 (659)
T ss_pred ccccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEE---ecCCeEEEccC
Confidence 0 00 0 0011222344443 7777774322 23455555 35
Q ss_pred CcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeE
Q 011700 109 GETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINV 188 (479)
Q Consensus 109 g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~V 188 (479)
++++.||+||||||++|..|+. ++.+..++++..+ +..+. . .+++++|||+|++|+|+|..|.++|.+|
T Consensus 270 g~~i~ad~lIIATGS~P~~P~~---~~~~~~~V~ts~d---~~~l~----~-lpk~VvIVGgG~iGvE~A~~l~~~G~eV 338 (659)
T PTZ00153 270 GKEFKVKNIIIATGSTPNIPDN---IEVDQKSVFTSDT---AVKLE----G-LQNYMGIVGMGIIGLEFMDIYTALGSEV 338 (659)
T ss_pred CEEEECCEEEEcCCCCCCCCCC---CCCCCCcEEehHH---hhhhh----h-cCCceEEECCCHHHHHHHHHHHhCCCeE
Confidence 6789999999999999988775 3344455665433 33221 1 3789999999999999999999999999
Q ss_pred EEEeecCccccccCCHHHHHHHHHHH-HhCCcEEEcCCceEEEEEcCCCcEEEEEeCC-------C--------cEEecc
Q 011700 189 TMVFPEAHCMARLFTPKIASYYEEYY-KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-------G--------NRLPTD 252 (479)
Q Consensus 189 tlv~~~~~~l~~~~~~~~~~~~~~~l-~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~-------g--------~~i~~D 252 (479)
|++++.+++++. +++++.+.+.+.+ +++||++++++.|.+++..+++....+.+.+ + +++++|
T Consensus 339 TLIe~~~~ll~~-~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD 417 (659)
T PTZ00153 339 VSFEYSPQLLPL-LDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVD 417 (659)
T ss_pred EEEeccCccccc-CCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcC
Confidence 999999999986 8999999998875 6799999999999999874333323343321 1 379999
Q ss_pred EEEEecCCCCChhhh---hcccccccCcEEEcCcccCC------CCCeEEEeeeccccccccCceeecccHHHHHHHHHH
Q 011700 253 MVVVGIGIRPNTSLF---EGQLTLEKGGIKVTGRLQSS------NSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKH 323 (479)
Q Consensus 253 ~Vi~a~G~~p~~~l~---~~~~~~~~g~i~Vd~~l~t~------~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~ 323 (479)
.|++|+|++||++.+ ..++..++|+|.||++|||+ +|+|||+|||++.+ .++..|..||+.
T Consensus 418 ~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~----------~La~~A~~qg~~ 487 (659)
T PTZ00153 418 SCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQ----------MLAHTASHQALK 487 (659)
T ss_pred EEEEEECcccCCccCCchhcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEecCCCc----------cCHHHHHHHHHH
Confidence 999999999999864 23455566889999999997 69999999998654 457789999999
Q ss_pred HHHHHcCC-------------CCCCCCCCCCeEEEeecCcceEeecCCCceEEEEc-------------cCC--------
Q 011700 324 AVAAIMEP-------------DKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-------------NFS-------- 369 (479)
Q Consensus 324 aa~~i~~~-------------~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~-------------~~~-------- 369 (479)
+++||++. ....+|..+|. ..+++++++++|+++.++...+ ...
T Consensus 488 aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~--~ift~PeiA~VGlTE~eA~~~g~~~~v~v~~~~~~~~~ra~~~~~~ 565 (659)
T PTZ00153 488 VVDWIEGKGKENVNINVENWASKPIIYKNIPS--VCYTTPELAFIGLTEKEAKELYPPDNVGVEISFYKANSKVLCENNI 565 (659)
T ss_pred HHHHHcCCCccccccccccccccccccCcCCE--EEECcCceEEeeCCHHHHHhcCCCcceEEEEEEecccchhhhcccc
Confidence 99999975 22234566774 5567888999999876443221 000
Q ss_pred ---------------------CCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccc
Q 011700 370 ---------------------GTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALA 425 (479)
Q Consensus 370 ---------------------~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~ 425 (479)
...|.++.+ ++++|||+|++|++++|+ +.++.||+.++|++||.++...||+++|.
T Consensus 566 ~~p~~~~~~~y~~g~~~~~~~~~G~vKli~d~~t~rILGa~ivG~~A~elI~~~a~aI~~~~tv~dl~~~~~~hPT~sE~ 645 (659)
T PTZ00153 566 SFPNNSKNNSYNKGKYNTVDNTEGMVKIVYLKDTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLAHMVHSHPTISEV 645 (659)
T ss_pred ccccccccccccccccccccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCChHHH
Confidence 234555544 689999999999999998 55899999999999999999899998886
Q ss_pred cCC
Q 011700 426 VSQ 428 (479)
Q Consensus 426 ~~~ 428 (479)
+..
T Consensus 646 ~~~ 648 (659)
T PTZ00153 646 LDA 648 (659)
T ss_pred HHH
Confidence 644
No 33
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=7.8e-48 Score=406.68 Aligned_cols=395 Identities=20% Similarity=0.245 Sum_probs=285.6
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCCcc-cccccCCC------CCCCC-CCcccccCCc
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PYERPAL-SKGYLLPE------APARL-PSFHTCVGAN 72 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~~l-~~~~~~~~------~~~~~-~~~~~~~~~~ 72 (479)
.+||||||||||||++||..|++.|.+ |+|||++... +.++.|+ ++.++... ....+ +++.......
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~---v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 173 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGAR---VTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTI 173 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCe---EEEEecCcceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCcc
Confidence 359999999999999999999999987 9999987421 1222222 22111000 00000 0110000000
Q ss_pred ----c-----------c-CCCHhHHHHc-CcEEEeCceEEEEECCCcEEEeCCC--cEEEeceEEeecCCCcccccccCC
Q 011700 73 ----E-----------E-RLTPKWYNEH-GIELVLGTRVKSADVRRKTLVTATG--ETISYKILIIATGARALKLEEFGL 133 (479)
Q Consensus 73 ----~-----------~-~~~~~~~~~~-gv~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~~~~~~~~g~ 133 (479)
. . ......+++. +|+++.+ ++..++.....+...+| ++++||+||||||++|..|++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i--- 249 (561)
T PRK13748 174 DRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHG-EARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPI--- 249 (561)
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCC---
Confidence 0 0 0112234444 7999988 67767765555655555 369999999999999998887
Q ss_pred CCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHH
Q 011700 134 SGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEY 213 (479)
Q Consensus 134 ~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~ 213 (479)
+|.+...+ +.+.+ .+. ....+++++|||+|++|+|+|..|+++|.+|+++++. .+++. +++++++.+.+.
T Consensus 250 ~g~~~~~~--~~~~~---~~~---~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~l~~-~d~~~~~~l~~~ 319 (561)
T PRK13748 250 PGLKETPY--WTSTE---ALV---SDTIPERLAVIGSSVVALELAQAFARLGSKVTILARS-TLFFR-EDPAIGEAVTAA 319 (561)
T ss_pred CCCCccce--EccHH---Hhh---cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-ccccc-cCHHHHHHHHHH
Confidence 55432222 22221 111 1124799999999999999999999999999999985 56665 799999999999
Q ss_pred HHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcCcccCCCC
Q 011700 214 YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRLQSSNS 289 (479)
Q Consensus 214 l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~l~t~~~ 289 (479)
|++.||++++++.+++++.+ ++.+ .+.+.++ ++++|.|++++|++||+.++ +.++.. ++|+|.||+++||++|
T Consensus 320 l~~~gI~i~~~~~v~~i~~~-~~~~-~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~ 396 (561)
T PRK13748 320 FRAEGIEVLEHTQASQVAHV-DGEF-VLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVP 396 (561)
T ss_pred HHHCCCEEEcCCEEEEEEec-CCEE-EEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCC
Confidence 99999999999999999863 3332 3555554 79999999999999999853 345666 5688999999999999
Q ss_pred CeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEEEEc---
Q 011700 290 SVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG--- 366 (479)
Q Consensus 290 ~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~--- 366 (479)
||||+|||+..+. .+..|..||++|+.||++.....++..+|. ..+++++++++|+++.++...|
T Consensus 397 ~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~~~~p~~a~vGlte~~a~~~g~~~ 464 (561)
T PRK13748 397 HIYAAGDCTDQPQ----------FVYVAAAAGTRAAINMTGGDAALDLTAMPA--VVFTDPQVATVGYSEAEAHHDGIET 464 (561)
T ss_pred CEEEeeecCCCcc----------chhHHHHHHHHHHHHHcCCCcccCCCCCCe--EEEccCCceeeeCCHHHHHHcCCCe
Confidence 9999999998653 356788999999999997654345566774 4578899999999875432111
Q ss_pred --------c-------CCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCC
Q 011700 367 --------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQ 428 (479)
Q Consensus 367 --------~-------~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~ 428 (479)
+ .....|.++.+ ++++|||+|++|+++.|+ +.++.||+.++|++||.++...||+++|.+.+
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~ 544 (561)
T PRK13748 465 DSRTLTLDNVPRALANFDTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKL 544 (561)
T ss_pred EEEEEecccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcccccCCchHHHHHH
Confidence 1 01234666555 589999999999999998 56899999999999999999999999987655
Q ss_pred C
Q 011700 429 K 429 (479)
Q Consensus 429 ~ 429 (479)
.
T Consensus 545 ~ 545 (561)
T PRK13748 545 A 545 (561)
T ss_pred H
Confidence 3
No 34
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=5.7e-48 Score=396.95 Aligned_cols=392 Identities=18% Similarity=0.212 Sum_probs=282.0
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCCcc-cccccCCC---------CCCCCC--------Cc
Q 011700 6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PYERPAL-SKGYLLPE---------APARLP--------SF 65 (479)
Q Consensus 6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~~l-~~~~~~~~---------~~~~~~--------~~ 65 (479)
++|||||||||++||..|++.|.+ |+|||+++.. +.++.|+ +|.++... ....++ .+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~---V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 78 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKN---VTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDW 78 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc---EEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCH
Confidence 899999999999999999999987 9999997542 1222222 22221100 000000 00
Q ss_pred ccccC------CcccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCC-cEEEeceEEeecCCCcccccccCCCCCCC
Q 011700 66 HTCVG------ANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATG-ETISYKILIIATGARALKLEEFGLSGSDA 138 (479)
Q Consensus 66 ~~~~~------~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g-~~~~~d~lviAtG~~~~~~~~~g~~g~~~ 138 (479)
..... ..........+++.+++++.+ ++..++.....+...++ ++++||+||||||++|+.|++ ++.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~---~~~~~ 154 (458)
T PRK06912 79 KQMQARKSQIVTQLVQGIQYLMKKNKIKVIQG-KASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPF---APFDG 154 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCC---CCCCC
Confidence 00000 000011223455679999988 55555544444444444 479999999999999987776 44443
Q ss_pred CCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCC
Q 011700 139 ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKG 218 (479)
Q Consensus 139 ~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~G 218 (479)
..+++..+ +..+ .. .+++++|||+|++|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.|+++|
T Consensus 155 ~~v~~~~~---~~~~----~~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~-~d~e~~~~l~~~L~~~G 225 (458)
T PRK06912 155 KWIINSKH---AMSL----PS-IPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG-EDEDIAHILREKLENDG 225 (458)
T ss_pred CeEEcchH---HhCc----cc-cCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc-ccHHHHHHHHHHHHHCC
Confidence 44443322 2221 11 4789999999999999999999999999999999999886 79999999999999999
Q ss_pred cEEEcCCceEEEEEcCCCcEEEEEeCCC--cEEeccEEEEecCCCCChhhh---hcccccccCcEEEcCcccCCCCCeEE
Q 011700 219 VKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTSLF---EGQLTLEKGGIKVTGRLQSSNSSVYA 293 (479)
Q Consensus 219 V~i~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~Vi~a~G~~p~~~l~---~~~~~~~~g~i~Vd~~l~t~~~~IyA 293 (479)
|++++++++++++.+ +.. ..+.. ++ +++++|.|++++|++|+++.+ ..++..++++|.||+++||+.|+|||
T Consensus 226 I~i~~~~~V~~i~~~-~~~-v~~~~-~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~gi~Vd~~~~ts~~~VyA 302 (458)
T PRK06912 226 VKIFTGAALKGLNSY-KKQ-ALFEY-EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVNEHMQTNVPHIYA 302 (458)
T ss_pred CEEEECCEEEEEEEc-CCE-EEEEE-CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCCEEeCCCeecCCCCEEE
Confidence 999999999999762 322 22332 34 369999999999999999753 23455545569999999999999999
Q ss_pred EeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEEEEc-------
Q 011700 294 VGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG------- 366 (479)
Q Consensus 294 ~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~------- 366 (479)
+|||+..+ +.+..|..||+.|+.++.+.....++..+|... +++.+++.+|+++.++...+
T Consensus 303 ~GD~~~~~----------~la~~A~~~g~~aa~~~~g~~~~~~~~~~p~~v--~~~p~~a~vGlte~~a~~~g~~~~~~~ 370 (458)
T PRK06912 303 CGDVIGGI----------QLAHVAFHEGTTAALHASGEDVKVNYHAVPRCI--YTSPEIASVGLTEKQAREQYGDIRIGE 370 (458)
T ss_pred EeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCCCCcCCCCeEE--ecCchhEEeeCCHHHHHHCCCCeEEEE
Confidence 99999754 457789999999999999765434567788633 56888999999876442111
Q ss_pred ----cC-------CCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCC
Q 011700 367 ----NF-------SGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQ 428 (479)
Q Consensus 367 ----~~-------~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~ 428 (479)
.. ....|.++.+ ++++|||+|++|+++.|+ +.++.||+.++|++||.+++..||++++.+.+
T Consensus 371 ~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~ 446 (458)
T PRK06912 371 FPFTANGKALIIGEQTGKVKVIVEPKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFIAAHPTLSEAIHE 446 (458)
T ss_pred EecCcchhHhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCCHHHHHHH
Confidence 00 0133555554 689999999999999998 56899999999999999999889998886654
No 35
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.5e-47 Score=395.35 Aligned_cols=399 Identities=19% Similarity=0.238 Sum_probs=285.6
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcC-------CCC--CCCCCCccc-ccccCCCC----CCCC-CCc
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISE-------EPV--APYERPALS-KGYLLPEA----PARL-PSF 65 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~-------~~~--~~~~~~~l~-~~~~~~~~----~~~~-~~~ 65 (479)
|+++||++||||||||++||.++++.|.+ |+|||+ ... .+.+..+++ +.++.... .... ..+
T Consensus 1 ~~~~~DviIIG~G~aG~~aA~~~~~~g~~---v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~ 77 (475)
T PRK06327 1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLK---VACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADH 77 (475)
T ss_pred CCcceeEEEECCCHHHHHHHHHHHhCCCe---EEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhc
Confidence 77789999999999999999999999987 899998 211 011112211 11110000 0000 000
Q ss_pred ccccCC-----------------cccCCCHhHHHHcCcEEEeCceEEEEEC--CCcEEEeC--CCcEEEeceEEeecCCC
Q 011700 66 HTCVGA-----------------NEERLTPKWYNEHGIELVLGTRVKSADV--RRKTLVTA--TGETISYKILIIATGAR 124 (479)
Q Consensus 66 ~~~~~~-----------------~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~~~~v~~~--~g~~~~~d~lviAtG~~ 124 (479)
...... ........+++..+++++.+ ++..++. +.++|.+. ++++++||+||||||++
T Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~ 156 (475)
T PRK06327 78 GIHVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKG-RGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSE 156 (475)
T ss_pred CccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCC
Confidence 000000 00011233455679999987 4555552 35667664 34589999999999999
Q ss_pred cccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCH
Q 011700 125 ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTP 204 (479)
Q Consensus 125 ~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~ 204 (479)
|+.+|.. + .+...+++.. +...+ . ..+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++
T Consensus 157 p~~~p~~--~-~~~~~~~~~~---~~~~~----~-~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~ 224 (475)
T PRK06327 157 PRHLPGV--P-FDNKIILDNT---GALNF----T-EVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA-ADE 224 (475)
T ss_pred CCCCCCC--C-CCCceEECcH---HHhcc----c-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc-CCH
Confidence 9765432 2 2222333222 22111 1 14799999999999999999999999999999999998886 799
Q ss_pred HHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC--C--cEEeccEEEEecCCCCChhhh---hccccc-ccC
Q 011700 205 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD--G--NRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKG 276 (479)
Q Consensus 205 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~--g--~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g 276 (479)
++.+.+.+.|+++||++++++.|.+++.+ ++.+ .+.+.+ | +++++|.|++++|++|+++++ ..++.. ++|
T Consensus 225 ~~~~~~~~~l~~~gi~i~~~~~v~~i~~~-~~~v-~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G 302 (475)
T PRK06327 225 QVAKEAAKAFTKQGLDIHLGVKIGEIKTG-GKGV-SVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERG 302 (475)
T ss_pred HHHHHHHHHHHHcCcEEEeCcEEEEEEEc-CCEE-EEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCC
Confidence 99999999999999999999999999873 3333 344443 3 479999999999999999843 234555 568
Q ss_pred cEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeec
Q 011700 277 GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYG 356 (479)
Q Consensus 277 ~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G 356 (479)
+|.||+++||+.|+|||+|||+..+ ..+..|..||+.||+||++.....++..+|... +++.+++.+|
T Consensus 303 ~i~vd~~~~Ts~~~VyA~GD~~~~~----------~~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~--~~~pe~a~vG 370 (475)
T PRK06327 303 FIPVDDHCRTNVPNVYAIGDVVRGP----------MLAHKAEEEGVAVAERIAGQKGHIDYNTIPWVI--YTSPEIAWVG 370 (475)
T ss_pred eEeECCCCccCCCCEEEEEeccCCc----------chHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEE--eCCcceEEEe
Confidence 8999999999999999999999754 346789999999999999765445677788744 5788999999
Q ss_pred CCCceEEEEc-----------cC-------CCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHH
Q 011700 357 DNVGEVVHYG-----------NF-------SGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAEL 415 (479)
Q Consensus 357 ~~~~~~~~~~-----------~~-------~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~ 415 (479)
+++.++...| +. ....|.++.+ ++++|||+|++|+++.|+ +.++.||+.++|++||.++
T Consensus 371 lte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~ 450 (475)
T PRK06327 371 KTEQQLKAEGVEYKAGKFPFMANGRALAMGEPDGFVKIIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIARI 450 (475)
T ss_pred CCHHHHHHcCCCEEEEEEcccccchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcC
Confidence 9876542111 00 1134555554 589999999999999988 5689999999999999999
Q ss_pred hhcCCCcccccCCC
Q 011700 416 ETQGLGFALAVSQK 429 (479)
Q Consensus 416 ~~~~~~~a~~~~~~ 429 (479)
+..||++++.+...
T Consensus 451 ~~~hPt~~e~~~~~ 464 (475)
T PRK06327 451 CHAHPTLSEVWHEA 464 (475)
T ss_pred CcCCCChHHHHHHH
Confidence 98999998876543
No 36
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=3.9e-47 Score=392.36 Aligned_cols=394 Identities=18% Similarity=0.182 Sum_probs=281.7
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC---CCCCCcc-cccccCC--------C-CCCC----CCCcc
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA---PYERPAL-SKGYLLP--------E-APAR----LPSFH 66 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~---~~~~~~l-~~~~~~~--------~-~~~~----~~~~~ 66 (479)
++|++|||+||||+++|..|+++|.+ |++||+++.. +.++.|. ++.++.. . .... .|.+.
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~g~~---v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 92 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEHGAR---VTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSID 92 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCe---EEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccC
Confidence 58999999999999999999999987 9999987321 1122222 2211110 0 0000 01100
Q ss_pred cc--cC------Cccc-CCCHhHHHHc-CcEEEeCceEEEEECCCcEEEeCCC--cEEEeceEEeecCCCcccccccCCC
Q 011700 67 TC--VG------ANEE-RLTPKWYNEH-GIELVLGTRVKSADVRRKTLVTATG--ETISYKILIIATGARALKLEEFGLS 134 (479)
Q Consensus 67 ~~--~~------~~~~-~~~~~~~~~~-gv~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~~~~~~~~g~~ 134 (479)
.. .. .... ......++.. +++++.+. ..-++.....|...++ +++.||+||||||++|+.|++ +
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~-a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i---~ 168 (479)
T PRK14727 93 RGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGY-ARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPI---P 168 (479)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEE-EEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCC---C
Confidence 00 00 0000 0122333433 89999884 4444443334444555 369999999999999998887 5
Q ss_pred CCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHH
Q 011700 135 GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYY 214 (479)
Q Consensus 135 g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l 214 (479)
|.+....+. + .+ .+.. ...+++++|||+|++|+|+|..|.++|.+||++.+. ++++. +++++.+.+.+.|
T Consensus 169 G~~~~~~~~--~-~~--~l~~---~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~~-~d~~~~~~l~~~L 238 (479)
T PRK14727 169 GLMDTPYWT--S-TE--ALFS---DELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLLFR-EDPLLGETLTACF 238 (479)
T ss_pred CcCccceec--c-hH--Hhcc---ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCCc-chHHHHHHHHHHH
Confidence 543222222 1 11 1111 124799999999999999999999999999999875 66775 7999999999999
Q ss_pred HhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcCcccCCCCC
Q 011700 215 KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRLQSSNSS 290 (479)
Q Consensus 215 ~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~l~t~~~~ 290 (479)
++.||++++++++++++.++ +. ..+.+.++ ++++|.|++++|++||+.++ ..++.. ++|+|.||+++||++|+
T Consensus 239 ~~~GV~i~~~~~V~~i~~~~-~~-~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~~ 315 (479)
T PRK14727 239 EKEGIEVLNNTQASLVEHDD-NG-FVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPD 315 (479)
T ss_pred HhCCCEEEcCcEEEEEEEeC-CE-EEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCCCC
Confidence 99999999999999998633 32 23555554 69999999999999999853 235655 56889999999999999
Q ss_pred eEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEEEE-----
Q 011700 291 VYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHY----- 365 (479)
Q Consensus 291 IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~----- 365 (479)
|||+|||+..+. .+..|..||+.|+.||++.....++..+|+ ..+++++++++|+++.++...
T Consensus 316 IyA~GD~~~~~~----------~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~--~~~~~p~ia~vGlte~~a~~~g~~~~ 383 (479)
T PRK14727 316 IYAAGDCSDLPQ----------FVYVAAAAGSRAGINMTGGNATLDLSAMPA--VIFTDPQVATVGLSEAKAHLSGIETI 383 (479)
T ss_pred EEEeeecCCcch----------hhhHHHHHHHHHHHHHcCCCcccccccCCc--EEEecCceeeeeCCHHHHHHcCCceE
Confidence 999999998653 356788999999999998654455666775 457889999999987654211
Q ss_pred ------ccC-------CCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCCC
Q 011700 366 ------GNF-------SGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQK 429 (479)
Q Consensus 366 ------~~~-------~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~~ 429 (479)
.+. ....|.++.+ ++++|||+|++|+++.|+ +.++.||+.++|++||.++...||+++|.+.+.
T Consensus 384 ~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~~ 463 (479)
T PRK14727 384 SRVLTMENVPRALANFETDGFIKLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQLFPYLTMVEGLKLC 463 (479)
T ss_pred EEEEEcccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCCccCCChHHHHHHH
Confidence 110 0134566554 689999999999999998 568999999999999999999999999876544
No 37
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=5.6e-47 Score=388.16 Aligned_cols=390 Identities=20% Similarity=0.260 Sum_probs=281.4
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCCcc-cccccCCCC----CCCCCCccc--------
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PYERPAL-SKGYLLPEA----PARLPSFHT-------- 67 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~~l-~~~~~~~~~----~~~~~~~~~-------- 67 (479)
++||+||||+||||..||.. ..|.+ |+|||++... +-++.|+ +|.++.... ......+..
T Consensus 1 ~~yD~vvIG~G~~g~~aa~~--~~g~~---V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d 75 (452)
T TIGR03452 1 RHYDLIIIGTGSGNSIPDPR--FADKR---IAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVR 75 (452)
T ss_pred CCcCEEEECCCHHHHHHHHH--HCCCe---EEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccC
Confidence 46999999999999998654 35777 9999987531 2222222 222221000 000000100
Q ss_pred ------ccCC----cccCCCHhHH---HHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCC
Q 011700 68 ------CVGA----NEERLTPKWY---NEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLS 134 (479)
Q Consensus 68 ------~~~~----~~~~~~~~~~---~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~ 134 (479)
.... ........+. ++.|++++.++.++. +.++|.+.++++++||+||||||++|..|+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~---~~~~V~~~~g~~~~~d~lIiATGs~p~~p~~~--- 149 (452)
T TIGR03452 76 WPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV---GPRTLRTGDGEEITGDQIVIAAGSRPYIPPAI--- 149 (452)
T ss_pred HHHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe---cCCEEEECCCcEEEeCEEEEEECCCCCCCCCC---
Confidence 0000 0000011121 237999999865553 67888887888899999999999999887642
Q ss_pred CCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHH
Q 011700 135 GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYY 214 (479)
Q Consensus 135 g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l 214 (479)
+.+ ++. +.+..++..+.. .+++++|||+|++|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.+
T Consensus 150 ~~~--~~~-~~~~~~~~~l~~-----~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~~~~l~~~~ 220 (452)
T TIGR03452 150 ADS--GVR-YHTNEDIMRLPE-----LPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH-LDEDISDRFTEIA 220 (452)
T ss_pred CCC--CCE-EEcHHHHHhhhh-----cCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-cCHHHHHHHHHHH
Confidence 211 222 234445544322 3799999999999999999999999999999999988875 7999998887755
Q ss_pred HhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhh---ccccc-ccCcEEEcCcccCCCCC
Q 011700 215 KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE---GQLTL-EKGGIKVTGRLQSSNSS 290 (479)
Q Consensus 215 ~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~---~~~~~-~~g~i~Vd~~l~t~~~~ 290 (479)
+.+|++++++.+++++.+ ++.+ .+.+.+|+++++|.|++++|++|+++++. .++.. ++|+|.||+++||++|+
T Consensus 221 -~~gI~i~~~~~V~~i~~~-~~~v-~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~ 297 (452)
T TIGR03452 221 -KKKWDIRLGRNVTAVEQD-GDGV-TLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARG 297 (452)
T ss_pred -hcCCEEEeCCEEEEEEEc-CCeE-EEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCC
Confidence 468999999999999863 3333 46677888999999999999999998753 35666 56889999999999999
Q ss_pred eEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCC--CCCCCCCCeEEEeecCcceEeecCCCceEEEEc--
Q 011700 291 VYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK--TDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-- 366 (479)
Q Consensus 291 IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~--~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~-- 366 (479)
|||+|||+..+ +....|.+||+++++||++... ..++..+|.. .+++++++++|+++.++...|
T Consensus 298 IyA~GD~~~~~----------~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~--i~t~p~ia~vGlte~ea~~~g~~ 365 (452)
T TIGR03452 298 VWALGDVSSPY----------QLKHVANAEARVVKHNLLHPNDLRKMPHDFVPSA--VFTHPQIATVGLTEQEAREAGHD 365 (452)
T ss_pred EEEeecccCcc----------cChhHHHHHHHHHHHHhcCCCCcccCCCCCCCeE--EECCCCeeeeeCCHHHHHhcCCC
Confidence 99999999854 3456789999999999997642 3566678864 457889999999886552211
Q ss_pred ------c----------CCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHH-hhcCCCccccc
Q 011700 367 ------N----------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAEL-ETQGLGFALAV 426 (479)
Q Consensus 367 ------~----------~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~-~~~~~~~a~~~ 426 (479)
. .....|.++.+ ++++|||+|++|+++.|+ +.++.||+.++|++||.++ ...||+++|.+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~ 445 (452)
T TIGR03452 366 ITVKIQNYGDVAYGWAMEDTTGFCKLIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPEVV 445 (452)
T ss_pred eEEEEecCCchhhHhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCcccCCchHHHH
Confidence 0 01134555554 689999999999999988 5689999999999999986 56788887654
Q ss_pred C
Q 011700 427 S 427 (479)
Q Consensus 427 ~ 427 (479)
.
T Consensus 446 ~ 446 (452)
T TIGR03452 446 E 446 (452)
T ss_pred H
Confidence 3
No 38
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.9e-48 Score=354.58 Aligned_cols=394 Identities=19% Similarity=0.232 Sum_probs=294.2
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC---CCCCCCcccccccCCCC-----C-----C-----CCCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV---APYERPALSKGYLLPEA-----P-----A-----RLPS 64 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~---~~~~~~~l~~~~~~~~~-----~-----~-----~~~~ 64 (479)
++||++|||||.+|+.+|+.+++.|.+ +.|+|..-. .+-++.|.++..++... . . ..+.
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAk---v~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~ 95 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAK---VALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGS 95 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCce---EEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccC
Confidence 369999999999999999999999988 788887621 12233344433332110 0 0 1111
Q ss_pred cccccCCc----ccCC----CHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCc--EEEeceEEeecCCCcccccccCCC
Q 011700 65 FHTCVGAN----EERL----TPKWYNEHGIELVLGTRVKSADVRRKTLVTATGE--TISYKILIIATGARALKLEEFGLS 134 (479)
Q Consensus 65 ~~~~~~~~----~~~~----~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~--~~~~d~lviAtG~~~~~~~~~g~~ 134 (479)
|.+..-.+ ...+ ++..+.+.+|+++.+ ...-+++.+-.|...++. .+++.+++||||++|..|.+||.+
T Consensus 96 fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G-~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIpG~E 174 (478)
T KOG0405|consen 96 FDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEG-RARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNIPGAE 174 (478)
T ss_pred CcHHHHHhhhhHHHHHHHHHHHhhccccceeEEee-eEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCCCCCchh
Confidence 11110000 0011 122234568999988 444455666667776763 378999999999999999874322
Q ss_pred -CCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHH
Q 011700 135 -GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEY 213 (479)
Q Consensus 135 -g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~ 213 (479)
|.+++..| ++++ .|+|++|||+||+++|+|..|+.+|.+++++.|.+.+|.. ||+.+++.+.+.
T Consensus 175 ~gidSDgff------~Lee--------~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~-FD~~i~~~v~~~ 239 (478)
T KOG0405|consen 175 LGIDSDGFF------DLEE--------QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRG-FDEMISDLVTEH 239 (478)
T ss_pred hcccccccc------chhh--------cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcc-hhHHHHHHHHHH
Confidence 23333333 2222 4899999999999999999999999999999999999886 999999999999
Q ss_pred HHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcCcccCCCC
Q 011700 214 YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRLQSSNS 289 (479)
Q Consensus 214 l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~l~t~~~ 289 (479)
|+.+||++|.++.++++....++... +....++...+|.++||+|+.|++.-+ +.++.+ .+|.|.||+|.+||+|
T Consensus 240 ~~~~ginvh~~s~~~~v~K~~~g~~~-~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp 318 (478)
T KOG0405|consen 240 LEGRGINVHKNSSVTKVIKTDDGLEL-VITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVP 318 (478)
T ss_pred hhhcceeecccccceeeeecCCCceE-EEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCC
Confidence 99999999999999999886566443 444556556699999999999999743 456777 6899999999999999
Q ss_pred CeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCC--CCCCCCCCCeEEEeecC-cceEeecCCCceEEE-E
Q 011700 290 SVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD--KTDKFDYLPFFYSRVFT-LSWQFYGDNVGEVVH-Y 365 (479)
Q Consensus 290 ~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~--~~~~~~~~p~~~~~~~~-~~~~~~G~~~~~~~~-~ 365 (479)
+||++||+++.- .+.+.|+.+|+..++.+++.. ...+|..+|. .+|. .++..+|++++|++. +
T Consensus 319 ~I~avGDv~gk~----------~LTPVAiaagr~la~rlF~~~~~~kldY~nVp~---vVFshP~igtVGLtE~EAieky 385 (478)
T KOG0405|consen 319 SIWAVGDVTGKI----------NLTPVAIAAGRKLANRLFGGGKDTKLDYENVPC---VVFSHPPIGTVGLTEEEAIEKY 385 (478)
T ss_pred ceEEeccccCcE----------ecchHHHhhhhhHHHHhhcCCCCCccccccCce---EEEecCCcccccCCHHHHHHHh
Confidence 999999999854 456788999999999999843 3368889995 4444 457899999987753 2
Q ss_pred ccCC-------------------CCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcc
Q 011700 366 GNFS-------------------GTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFA 423 (479)
Q Consensus 366 ~~~~-------------------~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a 423 (479)
|..+ .+.+.++.+ ++.+++|+|++|+...|+ +.++.|+++|+|..|++.+..+||+-|
T Consensus 386 g~~~i~vy~s~F~pm~~a~~~~k~kt~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKmGaTKadFD~tVaIHPTSA 465 (478)
T KOG0405|consen 386 GKGDIKVYTSKFNPMKYAMSGRKEKTLMKLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKMGATKADFDSTVAIHPTSA 465 (478)
T ss_pred CccceEEEecCCchhHhHhhcCCcceEEEEEEecCCCcEEEEEEecCCcHHHHhhhhhheecCcchhhhccceeecCCCH
Confidence 2111 122334444 799999999999988887 789999999999999999999999999
Q ss_pred cccCCC
Q 011700 424 LAVSQK 429 (479)
Q Consensus 424 ~~~~~~ 429 (479)
|+|-+.
T Consensus 466 EElVTm 471 (478)
T KOG0405|consen 466 EELVTM 471 (478)
T ss_pred HHheec
Confidence 998665
No 39
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=6.8e-47 Score=390.24 Aligned_cols=394 Identities=22% Similarity=0.254 Sum_probs=277.9
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCCcc-cccccCCC----CCCCCCCcccc------c
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PYERPAL-SKGYLLPE----APARLPSFHTC------V 69 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~~l-~~~~~~~~----~~~~~~~~~~~------~ 69 (479)
++||+|||||||||++||.+|++.|.+ |+|||++... +.++.|+ ++.++... .....+.+... .
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~ 78 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKK---VALIEKGPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKID 78 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccC
Confidence 569999999999999999999999987 9999995321 1111111 11111100 00000111000 0
Q ss_pred CCcc-----------cCCC-HhHHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCC
Q 011700 70 GANE-----------ERLT-PKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSD 137 (479)
Q Consensus 70 ~~~~-----------~~~~-~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~ 137 (479)
.... .... ...++..+++++.+ .+..++ .+++.+ ++++++||+||||||++ .|+++|.....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~--~~~v~v-~~~~~~~d~lIiATGs~--~p~ipg~~~~~ 152 (460)
T PRK06292 79 FKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKG-TARFVD--PNTVEV-NGERIEAKNIVIATGSR--VPPIPGVWLIL 152 (460)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEE-EEEEcc--CCEEEE-CcEEEEeCEEEEeCCCC--CCCCCCCcccC
Confidence 0000 0111 22345568888876 344333 345555 66789999999999999 34443322112
Q ss_pred CCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhC
Q 011700 138 AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSK 217 (479)
Q Consensus 138 ~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~ 217 (479)
...+++.. +...+ .. .+++++|||+|++|+|+|..|.++|.+|+++++.+++++. +++++.+.+++.|+++
T Consensus 153 ~~~~~~~~---~~~~~----~~-~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~~ 223 (460)
T PRK06292 153 GDRLLTSD---DAFEL----DK-LPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL-EDPEVSKQAQKILSKE 223 (460)
T ss_pred CCcEECch---HHhCc----cc-cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-hhHHHHHHHHHHHhhc
Confidence 23344332 22211 11 4799999999999999999999999999999999998885 8999999999999999
Q ss_pred CcEEEcCCceEEEEEcCCCcEEEEEeCCC--cEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcCcccCCCCCe
Q 011700 218 GVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRLQSSNSSV 291 (479)
Q Consensus 218 GV~i~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~l~t~~~~I 291 (479)
|++++++.+.+++.+++..+ .+.+.++ +++++|.|++++|++|+++++ ..++.. ++|.|.||+++||++|+|
T Consensus 224 -I~i~~~~~v~~i~~~~~~~v-~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~I 301 (460)
T PRK06292 224 -FKIKLGAKVTSVEKSGDEKV-EELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGI 301 (460)
T ss_pred -cEEEcCCEEEEEEEcCCceE-EEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCE
Confidence 99999999999986322122 2333333 579999999999999999843 335555 568899999999999999
Q ss_pred EEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCC-CCCCCCCCCCeEEEeecCcceEeecCCCceEEEEc----
Q 011700 292 YAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP-DKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG---- 366 (479)
Q Consensus 292 yA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~-~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~---- 366 (479)
||+|||+..+ ..+..|..||+.||.||++. .....+..+|+ ..+++++++++|+++.++...|
T Consensus 302 yA~GD~~~~~----------~~~~~A~~qg~~aa~~i~~~~~~~~~~~~~p~--~~~~~~~~a~vG~te~~a~~~g~~~~ 369 (460)
T PRK06292 302 YAAGDVNGKP----------PLLHEAADEGRIAAENAAGDVAGGVRYHPIPS--VVFTDPQIASVGLTEEELKAAGIDYV 369 (460)
T ss_pred EEEEecCCCc----------cchhHHHHHHHHHHHHhcCCCCCCcCCCCCCe--EEECCCccEEeECCHHHHHhcCCCeE
Confidence 9999999754 34678999999999999974 32345566775 4466888999999876542211
Q ss_pred -------cC-------CCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCC
Q 011700 367 -------NF-------SGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQ 428 (479)
Q Consensus 367 -------~~-------~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~ 428 (479)
.. ....|.++.+ ++++|||+|++|+++.|+ +.++.||++++|++||.++...||++++.+.+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~ 448 (460)
T PRK06292 370 VGEVPFEAQGRARVMGKNDGFVKVYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLSEGLRT 448 (460)
T ss_pred EEEEecccchHHHhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHHHH
Confidence 00 1134555554 579999999999999998 66899999999999999999889998887654
No 40
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00 E-value=1.5e-45 Score=376.71 Aligned_cols=389 Identities=23% Similarity=0.306 Sum_probs=301.8
Q ss_pred HHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCC-HhHHHHcCcEEEeCceEEE
Q 011700 18 YAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLT-PKWYNEHGIELVLGTRVKS 96 (479)
Q Consensus 18 ~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gv~~~~~~~v~~ 96 (479)
+||.+|+++. +..+|+|||+++.+.|....++. +..... ..+ ....... ..++.+.|++++.+++|+.
T Consensus 1 saA~~l~~~~-~~~~Vtlid~~~~~~~~~~~l~~-~~~g~~--~~~-------~~~~~~~~~~~~~~~gv~~~~~~~V~~ 69 (427)
T TIGR03385 1 SAASRVRRLD-KESDIIVFEKTEDVSFANCGLPY-VIGGVI--DDR-------NKLLAYTPEVFIKKRGIDVKTNHEVIE 69 (427)
T ss_pred CHHHHHHhhC-CCCcEEEEEcCCceeEEcCCCCe-Eecccc--CCH-------HHcccCCHHHHHHhcCCeEEecCEEEE
Confidence 4788998864 45679999999876554322211 110000 000 0001222 3455888999988889999
Q ss_pred EECCCcEEEeCC---CcEEE--eceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCC
Q 011700 97 ADVRRKTLVTAT---GETIS--YKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGG 171 (479)
Q Consensus 97 i~~~~~~v~~~~---g~~~~--~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG 171 (479)
++++++++.+.+ ++++. ||+||||||++|..|++ +|.+.+++++.+++.++..++..+....+++++|||+|
T Consensus 70 id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~~~~i---~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG 146 (427)
T TIGR03385 70 VNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPNI---EGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGG 146 (427)
T ss_pred EECCCCEEEEEECCCCCEEecCCCEEEECCCCCCCCCCC---CCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCC
Confidence 999988887753 35677 99999999999988876 66666778999999998888887755568999999999
Q ss_pred hHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEec
Q 011700 172 YIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPT 251 (479)
Q Consensus 172 ~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~ 251 (479)
++|+|+|..|++.|.+|+++++.+.++...+++++.+.+.+.|+++||++++++.+.+++. ++.+ +.+.+|+++++
T Consensus 147 ~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~~~--v~~~~g~~i~~ 222 (427)
T TIGR03385 147 YIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEG--EERV--KVFTSGGVYQA 222 (427)
T ss_pred HHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEec--CCCE--EEEcCCCEEEe
Confidence 9999999999999999999999988854458899999999999999999999999999975 3333 45678889999
Q ss_pred cEEEEecCCCCChhhhhc-cccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHc
Q 011700 252 DMVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 329 (479)
Q Consensus 252 D~Vi~a~G~~p~~~l~~~-~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 329 (479)
|.+++++|++|++++++. ++.. ++|+|.||+++||+.|+|||+|||+..+....+.+...+++..|.+||+++|+||.
T Consensus 223 D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~ 302 (427)
T TIGR03385 223 DMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIA 302 (427)
T ss_pred CEEEECCCccCCHHHHHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhc
Confidence 999999999999987764 5665 56889999999999999999999998876655555455688899999999999999
Q ss_pred CCCCCCCCC-CCCeEEEeecCcceEeecCCCceEEEEc---------cCC--------CCceEEEEc--cCCEEEEEEEe
Q 011700 330 EPDKTDKFD-YLPFFYSRVFTLSWQFYGDNVGEVVHYG---------NFS--------GTTFGAYWV--NKGRLVGSFLE 389 (479)
Q Consensus 330 ~~~~~~~~~-~~p~~~~~~~~~~~~~~G~~~~~~~~~~---------~~~--------~~~~~~~~~--~~~~i~G~~~~ 389 (479)
+.. ..+. ..+...+.+++++++++|+++.++...| ... ...|.++.+ ++++|||+|++
T Consensus 303 g~~--~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~ 380 (427)
T TIGR03385 303 GND--IEFKGVLGTNITKFFDLTIASTGVTENEAKKLNIDYKTVFVKAKTHANYYPGNSPLHLKLIYEKDTRRILGAQAV 380 (427)
T ss_pred CCC--CCCCCcceeeEEEEcCeEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCeEEEEEEE
Confidence 864 3443 2345567788999999999775432111 010 123555554 57999999999
Q ss_pred CCC-HHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCCC
Q 011700 390 GGT-KEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQK 429 (479)
Q Consensus 390 g~~-~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~~ 429 (479)
|++ +.|+ +.++.||++++|++||.++. +.|.|+|.+.
T Consensus 381 g~~~a~e~i~~~~~ai~~~~t~~~l~~~~---~~~~p~~~~~ 419 (427)
T TIGR03385 381 GKEGADKRIDVLAAAIMAGLTVKDLFFFE---LAYAPPYSRV 419 (427)
T ss_pred ccccHHHHHHHHHHHHHCCCCHHHHhhcc---cccCCCCCCc
Confidence 999 8887 66899999999999999887 7788888754
No 41
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=4.8e-46 Score=384.22 Aligned_cols=394 Identities=22% Similarity=0.279 Sum_probs=279.6
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCCcc-cccccCCCCC-C---CCCCcccccCC------
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PYERPAL-SKGYLLPEAP-A---RLPSFHTCVGA------ 71 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~~l-~~~~~~~~~~-~---~~~~~~~~~~~------ 71 (479)
|||+||||||||++||.+|+++|.+ |+|||+.... +.+..+. ++.++..... . ....+......
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~---v~lie~~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 78 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLK---VALVEKEYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWE 78 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHH
Confidence 8999999999999999999999987 9999984321 1122222 1111110000 0 00000000000
Q ss_pred -----------cccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCC-cEEEeceEEeecCCCcccccccCCCCCCCC
Q 011700 72 -----------NEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATG-ETISYKILIIATGARALKLEEFGLSGSDAE 139 (479)
Q Consensus 72 -----------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g-~~~~~d~lviAtG~~~~~~~~~g~~g~~~~ 139 (479)
........++++.+++++.+ ++..++.....+...++ .+++||+||||||++|+.|+++ + +.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~-~-~~~~~ 155 (461)
T TIGR01350 79 KMQKRKNKVVKKLVGGVKGLLKKNKVTVIKG-EAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLPGP-F-DFDGE 155 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCC-C-CCCCc
Confidence 00011123455678999988 45555544334443343 4799999999999999887762 0 22222
Q ss_pred CeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCc
Q 011700 140 NVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV 219 (479)
Q Consensus 140 ~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV 219 (479)
.++ +..+...+ .. .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.||
T Consensus 156 ~~~---~~~~~~~~----~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~gi 226 (461)
T TIGR01350 156 VVI---TSTGALNL----KE-VPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG-EDAEVSKVVAKALKKKGV 226 (461)
T ss_pred eEE---cchHHhcc----cc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC-CCHHHHHHHHHHHHHcCC
Confidence 233 33333222 11 4789999999999999999999999999999999998885 899999999999999999
Q ss_pred EEEcCCceEEEEEcCCCcEEEEEeCCC--cEEeccEEEEecCCCCChh--hhh-ccccc-ccCcEEEcCcccCCCCCeEE
Q 011700 220 KFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTS--LFE-GQLTL-EKGGIKVTGRLQSSNSSVYA 293 (479)
Q Consensus 220 ~i~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~Vi~a~G~~p~~~--l~~-~~~~~-~~g~i~Vd~~l~t~~~~IyA 293 (479)
++++++.+.+++.+ ++.+ .+.+.+| +++++|.|++++|++|++. +++ .++.. .+|.|.||+++||+.|+|||
T Consensus 227 ~i~~~~~v~~i~~~-~~~v-~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~Iya 304 (461)
T TIGR01350 227 KILTNTKVTAVEKN-DDQV-VYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGIYA 304 (461)
T ss_pred EEEeCCEEEEEEEe-CCEE-EEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCEEE
Confidence 99999999999863 3433 3555666 5799999999999999998 333 34555 56889999999999999999
Q ss_pred EeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEeecCcceEeecCCCceEEEE-------
Q 011700 294 VGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHY------- 365 (479)
Q Consensus 294 ~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~------- 365 (479)
+|||+..+ ..+..|..||+.+|+||.+... ..++...|. ..+++.+++.+|+++.++...
T Consensus 305 iGD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~--~~~~~~~~a~vG~~~~~a~~~g~~~~~~ 372 (461)
T TIGR01350 305 IGDVIGGP----------MLAHVASHEGIVAAENIAGKEPAPIDYDAVPS--CIYTDPEVASVGLTEEQAKEAGYDVKIG 372 (461)
T ss_pred eeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCe--EEecCCceEEEeCCHHHHHhCCCCeEEE
Confidence 99999754 4577899999999999997653 234445564 556788899999876543211
Q ss_pred ----ccC-------CCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccC
Q 011700 366 ----GNF-------SGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVS 427 (479)
Q Consensus 366 ----~~~-------~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~ 427 (479)
.+. ....|.++.+ ++++|||+|++|+++.|+ +.++.||++++|++||.++...||++++.+.
T Consensus 373 ~~~~~~~~~~~~~~~~~g~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~ 448 (461)
T TIGR01350 373 KFPFAANGKALALGETDGFVKIIADKKTGEILGAHIIGPHATELISEAVLAMELELTVEELAKTIHPHPTLSEAIK 448 (461)
T ss_pred EEeCccchHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCCHHHHHH
Confidence 110 1134555444 589999999999999887 6689999999999999998877777776543
No 42
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=100.00 E-value=1.7e-45 Score=371.36 Aligned_cols=388 Identities=25% Similarity=0.352 Sum_probs=324.5
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN 82 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (479)
.+.++||||.|++|..+..++.+...+...|+++-.+++..|+|.+++..+....... +......+|++
T Consensus 2 ~k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~e-----------di~l~~~dwy~ 70 (793)
T COG1251 2 KKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAE-----------DISLNRNDWYE 70 (793)
T ss_pred CceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHH-----------HHhccchhhHH
Confidence 3478999999999999999999955445679999999999999999876543322221 12245678999
Q ss_pred HcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCC
Q 011700 83 EHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSG 162 (479)
Q Consensus 83 ~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~ 162 (479)
+++|+++.+.+|+.||++++.|+++.|+++.||+||+||||.|++||+ ||.+.+.++..++++|...+.+..+ ..
T Consensus 71 ~~~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~Pi---PG~~~~~v~~~R~i~D~~am~~~ar--~~ 145 (793)
T COG1251 71 ENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILPI---PGSDLPGVFVYRTIDDVEAMLDCAR--NK 145 (793)
T ss_pred HcCcEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCccccccCC---CCCCCCCeeEEecHHHHHHHHHHHh--cc
Confidence 999999999999999999999999999999999999999999999997 8999999999999999999988744 35
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEE
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN 242 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~ 242 (479)
++.+|||+|..|+|+|..|...|.++++++..+.++.+.+|+...+.+++.++++|++++++....++.. ++++..+.
T Consensus 146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr 223 (793)
T COG1251 146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVR 223 (793)
T ss_pred CCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhc--CcceeeEe
Confidence 6789999999999999999999999999999999999989999999999999999999999988888865 67788999
Q ss_pred eCCCcEEeccEEEEecCCCCChhhhhcc-cccccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHH
Q 011700 243 LRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSA 321 (479)
Q Consensus 243 ~~~g~~i~~D~Vi~a~G~~p~~~l~~~~-~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g 321 (479)
++||+.+++|.|++|+|.+||+.+.... +..+. +|.||++||||+|+|||+|+|+.+....+ .++..+.+|+
T Consensus 224 ~~DG~~i~ad~VV~a~GIrPn~ela~~aGlavnr-GIvvnd~mqTsdpdIYAvGEcae~~g~~y------GLVaP~yeq~ 296 (793)
T COG1251 224 FADGTEIPADLVVMAVGIRPNDELAKEAGLAVNR-GIVVNDYMQTSDPDIYAVGECAEHRGKVY------GLVAPLYEQA 296 (793)
T ss_pred ecCCCcccceeEEEecccccccHhHHhcCcCcCC-CeeecccccccCCCeeehhhHHHhcCccc------eehhHHHHHH
Confidence 9999999999999999999999998764 44444 89999999999999999999999876544 5677889999
Q ss_pred HHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCC----ceEEEEccCCCCceEEEEccCCEEEEEEEeCCCHHHHH
Q 011700 322 KHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNV----GEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYE 397 (479)
Q Consensus 322 ~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~----~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~g~~~~e~~ 397 (479)
+++|.++.+......-..++...-.+....+.+.|... .+.+.+.|.....|.++.+++++|+|+.++|+. .+-.
T Consensus 297 ~v~a~hl~~~~~~~y~gsv~stkLKv~Gvdl~S~GD~~e~~~~~~iv~~D~~~~iYKrlvL~dd~IvgavL~GDt-~d~~ 375 (793)
T COG1251 297 KVLADHLCGGEAEAYEGSVTSTKLKVSGVDVFSAGDFQETEGAESIVFRDEQRGIYKKLVLKDDKIVGAVLYGDT-SDGG 375 (793)
T ss_pred HHHHHHhccCcccccccccchhhhcccccceeeccchhhcCCCceEEEecccccceeEEEEeCCeEEEEEEEeec-ccch
Confidence 99999999876432222233333344455555566432 345666676667899999999999999999964 4456
Q ss_pred HHHHHHHcCCCcCcHHHHh
Q 011700 398 AIAKATRLQPVVEDLAELE 416 (479)
Q Consensus 398 ~~~~~i~~~~~~~dl~~~~ 416 (479)
.+..+|..+..++++.+..
T Consensus 376 ~l~~li~~~~~~se~r~~l 394 (793)
T COG1251 376 WLLDLILKGADISEIRDTL 394 (793)
T ss_pred HHHHHHhcCCCccccchhh
Confidence 6778899999998877654
No 43
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=7.3e-46 Score=346.10 Aligned_cols=398 Identities=21% Similarity=0.272 Sum_probs=292.4
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC---CCCCCcc-cccccCCCCCC------CCCCcccccCC-
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA---PYERPAL-SKGYLLPEAPA------RLPSFHTCVGA- 71 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~---~~~~~~l-~~~~~~~~~~~------~~~~~~~~~~~- 71 (479)
.+||++|||+||+|..||+.++++|++ .+.||++... +.+..|+ ++.++...... .+..+......
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlk---TacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~ 114 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLK---TACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSV 114 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcce---eEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccce
Confidence 369999999999999999999999999 5888886542 1222222 33333221100 00000000000
Q ss_pred ----------------cccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCC--cEEEeceEEeecCCCcccccccCC
Q 011700 72 ----------------NEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATG--ETISYKILIIATGARALKLEEFGL 133 (479)
Q Consensus 72 ----------------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~~~~~~~~g~ 133 (479)
.....+...+++.+|+++.+.. .-+++..-.+.-.+| ..+.++++|||||+.-. +.||+
T Consensus 115 ~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~g-sf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~--~~PGI 191 (506)
T KOG1335|consen 115 SLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFG-SFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVT--PFPGI 191 (506)
T ss_pred ecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeE-eecCCceEEEeccCCCceEEeeeeEEEEeCCccC--CCCCe
Confidence 0011233456778899998843 334444333444444 57899999999999532 33222
Q ss_pred CCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHH
Q 011700 134 SGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEY 213 (479)
Q Consensus 134 ~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~ 213 (479)
. .|.+.+.+.+....+.+ -|++++|||+|++|+|++..+.++|.+||+++-.+.+.+. +|.+++..+++.
T Consensus 192 ~-IDekkIVSStgALsL~~--------vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~-mD~Eisk~~qr~ 261 (506)
T KOG1335|consen 192 T-IDEKKIVSSTGALSLKE--------VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV-MDGEISKAFQRV 261 (506)
T ss_pred E-ecCceEEecCCccchhh--------CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc-cCHHHHHHHHHH
Confidence 2 23445555554444333 4899999999999999999999999999999999999886 899999999999
Q ss_pred HHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC---C--cEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcCcc
Q 011700 214 YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---G--NRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRL 284 (479)
Q Consensus 214 l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~---g--~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~l 284 (479)
|+++|++|++++++...+.+.||.+ .+++.+ + ++++||.+++++||+|.+.-+ +-++.. ..+.|.||.++
T Consensus 262 L~kQgikF~l~tkv~~a~~~~dg~v-~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f 340 (506)
T KOG1335|consen 262 LQKQGIKFKLGTKVTSATRNGDGPV-EIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRF 340 (506)
T ss_pred HHhcCceeEeccEEEEeeccCCCce-EEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccc
Confidence 9999999999999999998777744 455543 2 479999999999999999743 345555 57889999999
Q ss_pred cCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEEE
Q 011700 285 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVH 364 (479)
Q Consensus 285 ~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~ 364 (479)
+|.+|+||++|||...|+. +..|..||..+.+.|.+.....+|..+|...+ ...+++.+|.+++++..
T Consensus 341 ~t~vP~i~~IGDv~~gpML----------AhkAeeegI~~VE~i~g~~~hv~ynciP~v~y--thPEvawVG~TEeqlke 408 (506)
T KOG1335|consen 341 QTKVPHIYAIGDVTLGPML----------AHKAEEEGIAAVEGIAGGHGHVDYNCIPSVVY--THPEVAWVGKTEEQLKE 408 (506)
T ss_pred cccCCceEEecccCCcchh----------hhhhhhhchhheeeecccCcccccCCCCceee--cccceeeeccchhhHHh
Confidence 9999999999999999864 55788899999999998876678888995432 23446778988765321
Q ss_pred ------Ec------------cCCCCceEEEE--ccCCEEEEEEEeCCCHHHHHH-HHHHHHcCCCcCcHHHHhhcCCCcc
Q 011700 365 ------YG------------NFSGTTFGAYW--VNKGRLVGSFLEGGTKEEYEA-IAKATRLQPVVEDLAELETQGLGFA 423 (479)
Q Consensus 365 ------~~------------~~~~~~~~~~~--~~~~~i~G~~~~g~~~~e~~~-~~~~i~~~~~~~dl~~~~~~~~~~a 423 (479)
.| +.+...|.+.. .+++||||+||+||+|+|+++ ...||..|.+.+|+++....||++.
T Consensus 409 egi~y~vgkfpF~aNsRaktn~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvarvchaHPTlS 488 (506)
T KOG1335|consen 409 EGIKYKVGKFPFSANSRAKTNNDTEGFVKVLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVARVCHAHPTLS 488 (506)
T ss_pred cCcceEeeeccccccchhhccCCccceeEEEecCCCCcEEEEEEecCCHHHHHHHHHHHHHhCccHHHHhhccCCCCcHH
Confidence 11 11124455543 389999999999999999955 7899999999999999999999999
Q ss_pred cccCCC
Q 011700 424 LAVSQK 429 (479)
Q Consensus 424 ~~~~~~ 429 (479)
|.|.++
T Consensus 489 Ea~kEa 494 (506)
T KOG1335|consen 489 EAFKEA 494 (506)
T ss_pred HHHHHH
Confidence 998876
No 44
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=5.8e-41 Score=328.26 Aligned_cols=301 Identities=25% Similarity=0.350 Sum_probs=243.2
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
++++||||||.+|+.+|..|.+.. ++.+|++||+.+++.|. |.+..-.. ..++. ......+...+++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~-~~~~itLVd~~~~hl~~-plL~eva~-----g~l~~------~~i~~p~~~~~~~ 69 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL-PDVEITLVDRRDYHLFT-PLLYEVAT-----GTLSE------SEIAIPLRALLRK 69 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC-CCCcEEEEeCCCccccc-hhhhhhhc-----CCCCh------hheeccHHHHhcc
Confidence 479999999999999999999975 35679999999987764 33321111 00000 1112345666774
Q ss_pred c-CcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhc---
Q 011700 84 H-GIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKS--- 159 (479)
Q Consensus 84 ~-gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~--- 159 (479)
. +++++++ +|++||+++++|.+.+++.+.||+||||+|+.+..+.+ ||.. ++.+.+++++|+.++++.+..
T Consensus 70 ~~~v~~~~~-~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fgi---~G~~-E~a~~lks~edA~~ir~~l~~~fe 144 (405)
T COG1252 70 SGNVQFVQG-EVTDIDRDAKKVTLADLGEISYDYLVVALGSETNYFGI---PGAA-EYAFGLKTLEDALRLRRHLLEAFE 144 (405)
T ss_pred cCceEEEEE-EEEEEcccCCEEEeCCCccccccEEEEecCCcCCcCCC---CCHH-HhCCCCCCHHHHHHHHHHHHHHHH
Confidence 4 4999998 89999999999999998889999999999999876655 7743 678899999999998887751
Q ss_pred ----CCC----CCEEEECCChHHHHHHHHHhhC-------------CCeEEEEeecCccccccCCHHHHHHHHHHHHhCC
Q 011700 160 ----CSG----GNAVVIGGGYIGMECAASLVIN-------------KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKG 218 (479)
Q Consensus 160 ----~~~----~~vvVIGgG~~g~E~A~~l~~~-------------g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~G 218 (479)
.+. .+++|+|+|++|+|+|.+|.++ ..+|+++++.+++||. +++++++..++.|+++|
T Consensus 145 ~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~-~~~~l~~~a~~~L~~~G 223 (405)
T COG1252 145 KASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPM-FPPKLSKYAERALEKLG 223 (405)
T ss_pred HhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccC-CCHHHHHHHHHHHHHCC
Confidence 112 2699999999999999998753 1389999999999996 89999999999999999
Q ss_pred cEEEcCCceEEEEEcCCCcEEEEEeCCCc-EEeccEEEEecCCCCChhhhh-ccccc-ccCcEEEcCcccC-CCCCeEEE
Q 011700 219 VKFVKGTVLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIGIRPNTSLFE-GQLTL-EKGGIKVTGRLQS-SNSSVYAV 294 (479)
Q Consensus 219 V~i~~~~~v~~i~~~~~g~v~~v~~~~g~-~i~~D~Vi~a~G~~p~~~l~~-~~~~~-~~g~i~Vd~~l~t-~~~~IyA~ 294 (479)
|++++++.|+++++ + .|.+++|. +|++|.++|++|.+++....+ .+.+. ..|++.||++||+ ++|+|||+
T Consensus 224 V~v~l~~~Vt~v~~--~----~v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~ 297 (405)
T COG1252 224 VEVLLGTPVTEVTP--D----GVTLKDGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAA 297 (405)
T ss_pred CEEEcCCceEEECC--C----cEEEccCCeeEecCEEEEcCCCcCChhhhhcChhhhccCCCEEeCCCcccCCCCCeEEE
Confidence 99999999999976 3 47788887 599999999999999987665 35554 4699999999998 89999999
Q ss_pred eeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCC
Q 011700 295 GDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK 333 (479)
Q Consensus 295 GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~ 333 (479)
|||+..+.. .+.++.++.|.+||..+++||.....
T Consensus 298 GD~A~~~~~----~p~P~tAQ~A~Qqg~~~a~ni~~~l~ 332 (405)
T COG1252 298 GDCAAVIDP----RPVPPTAQAAHQQGEYAAKNIKARLK 332 (405)
T ss_pred eccccCCCC----CCCCChhHHHHHHHHHHHHHHHHHhc
Confidence 999987753 22347789999999999999986543
No 45
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=9.6e-40 Score=332.49 Aligned_cols=298 Identities=20% Similarity=0.276 Sum_probs=232.3
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN 82 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (479)
++++|||||||+||+.+|..|.+.+ .+|+|||+++++.|. |.++. +..... .. ......+...++
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~---~~ItlI~~~~~~~~~-~~l~~-~~~g~~--~~--------~~~~~~~~~~~~ 73 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKK---YNITVISPRNHMLFT-PLLPQ-TTTGTL--EF--------RSICEPVRPALA 73 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCC---CeEEEEcCCCCcchh-hhHHH-hcccCC--Ch--------HHhHHHHHHHhc
Confidence 4579999999999999999886533 459999999877663 44332 111100 00 000112344456
Q ss_pred HcCcEEEeCceEEEEECCCcEEEe----------CCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHH
Q 011700 83 EHGIELVLGTRVKSADVRRKTLVT----------ATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANR 152 (479)
Q Consensus 83 ~~gv~~~~~~~v~~i~~~~~~v~~----------~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~ 152 (479)
.++++++.+ +|++||++++++.+ .++.+++||+||||||++|..+++ ||.+ ++++.++++.++.+
T Consensus 74 ~~~~~~i~~-~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~i---pG~~-e~~~~~~~~~~a~~ 148 (424)
T PTZ00318 74 KLPNRYLRA-VVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNI---PGVE-ERAFFLKEVNHARG 148 (424)
T ss_pred cCCeEEEEE-EEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCCC---CCHH-HcCCCCCCHHHHHH
Confidence 678999886 89999999999887 456789999999999999987776 6654 36778888888888
Q ss_pred HHHHHhcC---------------CCCCEEEECCChHHHHHHHHHhh--------------CCCeEEEEeecCccccccCC
Q 011700 153 LVNVMKSC---------------SGGNAVVIGGGYIGMECAASLVI--------------NKINVTMVFPEAHCMARLFT 203 (479)
Q Consensus 153 l~~~l~~~---------------~~~~vvVIGgG~~g~E~A~~l~~--------------~g~~Vtlv~~~~~~l~~~~~ 203 (479)
+++.+.++ ..++++|||+|++|+|+|..|.. .+.+|+++++.+++++. ++
T Consensus 149 ~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~-~~ 227 (424)
T PTZ00318 149 IRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS-FD 227 (424)
T ss_pred HHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc-CC
Confidence 77655321 12489999999999999999875 37899999999999985 89
Q ss_pred HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhhccccc-ccCcEEEcC
Q 011700 204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTG 282 (479)
Q Consensus 204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd~ 282 (479)
+++.+.+++.|+++||+++++++|++++. + .+.+++|+++++|.+++++|.+|+..+...++.. ++|+|.||+
T Consensus 228 ~~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~----~v~~~~g~~i~~d~vi~~~G~~~~~~~~~~~l~~~~~G~I~Vd~ 301 (424)
T PTZ00318 228 QALRKYGQRRLRRLGVDIRTKTAVKEVLD--K----EVVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRISVDD 301 (424)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEEEEeC--C----EEEECCCCEEEccEEEEccCCCCcchhhhcCCcccCCCcEEeCC
Confidence 99999999999999999999999999964 2 3668899999999999999999985433445555 578999999
Q ss_pred ccc-CCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCC
Q 011700 283 RLQ-SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD 332 (479)
Q Consensus 283 ~l~-t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~ 332 (479)
+|| |++|||||+|||+..+.. ...+.+..|.+||+.+|+||....
T Consensus 302 ~l~~~~~~~IfAiGD~a~~~~~-----~~~~~~~~A~~qg~~~A~ni~~~l 347 (424)
T PTZ00318 302 HLRVKPIPNVFALGDCAANEER-----PLPTLAQVASQQGVYLAKEFNNEL 347 (424)
T ss_pred CcccCCCCCEEEEeccccCCCC-----CCCCchHHHHHHHHHHHHHHHHHh
Confidence 999 599999999999986431 112567889999999999997653
No 46
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=1.4e-37 Score=311.53 Aligned_cols=297 Identities=22% Similarity=0.295 Sum_probs=232.5
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHcC
Q 011700 6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEHG 85 (479)
Q Consensus 6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 85 (479)
+|||||||+||+.+|.+|+++..+..+|+|||+++.++|.. .++ .++.... + ..+......+++++++
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~-~~~-~~~~g~~----~------~~~~~~~~~~~~~~~g 68 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSG-MLP-GMIAGHY----S------LDEIRIDLRRLARQAG 68 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccc-hhh-HHHheeC----C------HHHhcccHHHHHHhcC
Confidence 58999999999999999976544566899999998877653 221 1111000 0 0111233456777889
Q ss_pred cEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhc-----C
Q 011700 86 IELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKS-----C 160 (479)
Q Consensus 86 v~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~-----~ 160 (479)
++++.+ +|..+|+++++|.+.++++++||+||||||++|..|++ || ..++++.+++++++....+.+.. .
T Consensus 69 v~~~~~-~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i---~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (364)
T TIGR03169 69 ARFVIA-EATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGV---EG-AADLAVPVKPIENFLARWEALLESADAPP 143 (364)
T ss_pred CEEEEE-EEEEEecccCEEEECCCCcccccEEEEccCCCCCCCCC---Cc-ccccccccCCHHHHHHHHHHHHHHHhcCC
Confidence 999987 89999999999999999899999999999999998877 66 34677788888777664333321 1
Q ss_pred CCCCEEEECCChHHHHHHHHHhh----CC--CeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcC
Q 011700 161 SGGNAVVIGGGYIGMECAASLVI----NK--INVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDS 234 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~----~g--~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~ 234 (479)
.+++++|||+|++|+|+|..|.+ .| .+|+++ +.+.+++. +++++.+.+.+.|+++||++++++.+++++.
T Consensus 144 ~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~-- 219 (364)
T TIGR03169 144 GTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPG-FPAKVRRLVLRLLARRGIEVHEGAPVTRGPD-- 219 (364)
T ss_pred CCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccccc-CCHHHHHHHHHHHHHCCCEEEeCCeeEEEcC--
Confidence 35799999999999999999975 34 589999 66677765 7899999999999999999999999998853
Q ss_pred CCcEEEEEeCCCcEEeccEEEEecCCCCChhhhhccccc-ccCcEEEcCcccC-CCCCeEEEeeeccccccccCceeecc
Q 011700 235 NGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQS-SNSSVYAVGDVAAFPLKLLGETRRLE 312 (479)
Q Consensus 235 ~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd~~l~t-~~~~IyA~GD~~~~~~~~~g~~~~~~ 312 (479)
+ .+.+.+|+++++|.+++++|.+|+..+...++.. ++|+|.||+++|| ++|+|||+|||+..+... ..+
T Consensus 220 ~----~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~-----~~~ 290 (364)
T TIGR03169 220 G----ALILADGRTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAP-----RPK 290 (364)
T ss_pred C----eEEeCCCCEEecCEEEEccCCChhhHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCC-----CCC
Confidence 2 4667888999999999999999998776666665 5789999999998 999999999999764321 114
Q ss_pred cHHHHHHHHHHHHHHHcCCC
Q 011700 313 HVDSARKSAKHAVAAIMEPD 332 (479)
Q Consensus 313 ~~~~A~~~g~~aa~~i~~~~ 332 (479)
....|.+||+.+|+||....
T Consensus 291 ~~~~A~~~g~~~a~ni~~~l 310 (364)
T TIGR03169 291 AGVYAVRQAPILAANLRASL 310 (364)
T ss_pred chHHHHHhHHHHHHHHHHHh
Confidence 56779999999999997543
No 47
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=1.8e-36 Score=298.16 Aligned_cols=294 Identities=21% Similarity=0.213 Sum_probs=208.5
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCccc-ccCCcccCCCHhHH
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT-CVGANEERLTPKWY 81 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 81 (479)
+.+||+||||||||++||..|+++|++ +++||....... + ........+|.... ..+......+.+..
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~---~~~ie~~~~gg~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQ---PVLITGMEKGGQ----L----TTTTEVENWPGDPNDLTGPLLMERMHEHA 73 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCC---eEEEEeecCCCc----e----ecCceECCCCCCCCCCCHHHHHHHHHHHH
Confidence 568999999999999999999999987 788885432110 0 00001112222111 00111112334455
Q ss_pred HHcCcEEEeCceEEEEECCCcEEEeC-CCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcC
Q 011700 82 NEHGIELVLGTRVKSADVRRKTLVTA-TGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSC 160 (479)
Q Consensus 82 ~~~gv~~~~~~~v~~i~~~~~~v~~~-~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~ 160 (479)
..++++++.+ .+..++...+.+.+. +...+.||+||||||+.|+.|+++|........++++..+.... .
T Consensus 74 ~~~~~~~~~~-~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~~~~i~g~~~~~~~~v~~~~~~~~~~--------~ 144 (321)
T PRK10262 74 TKFETEIIFD-HINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFF--------Y 144 (321)
T ss_pred HHCCCEEEee-EEEEEEecCCeEEEEecCCEEEECEEEECCCCCCCCCCCCCHHHcCCCcEEEeecCCHHH--------c
Confidence 5677787776 677788766664442 23478999999999999988877332211223444443332211 1
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 240 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~ 240 (479)
.+++++|||+|++|+|+|..|++.+.+|+++++.+.+. .++.+.+.+.+.|++.||++++++.+++++. +++.+..
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~---~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~-~~~~~~~ 220 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTG-DQMGVTG 220 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC---CCHHHHHHHHhhccCCCeEEEeCCEEEEEEc-CCccEEE
Confidence 58999999999999999999999999999999987652 3677888889999999999999999999986 3334445
Q ss_pred EEeCCC------cEEeccEEEEecCCCCChhhhhcccccccCcEEEcC-----cccCCCCCeEEEeeeccccccccCcee
Q 011700 241 VNLRDG------NRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTG-----RLQSSNSSVYAVGDVAAFPLKLLGETR 309 (479)
Q Consensus 241 v~~~~g------~~i~~D~Vi~a~G~~p~~~l~~~~~~~~~g~i~Vd~-----~l~t~~~~IyA~GD~~~~~~~~~g~~~ 309 (479)
+.+.++ +++++|.|++++|++|++.+++.++..++|+|.||+ ++||++|+|||+|||+..+.
T Consensus 221 v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~~l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~------- 293 (321)
T PRK10262 221 VRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIY------- 293 (321)
T ss_pred EEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhccccccCCEEEECCCCcccccccCCCCEEECeeccCCCc-------
Confidence 555432 379999999999999999988766666778999997 78999999999999997543
Q ss_pred ecccHHHHHHHHHHHHHHHc
Q 011700 310 RLEHVDSARKSAKHAVAAIM 329 (479)
Q Consensus 310 ~~~~~~~A~~~g~~aa~~i~ 329 (479)
..+..|+.+|..||..|.
T Consensus 294 --~~~~~A~~~g~~Aa~~~~ 311 (321)
T PRK10262 294 --RQAITSAGTGCMAALDAE 311 (321)
T ss_pred --ceEEEEehhHHHHHHHHH
Confidence 223346677777777664
No 48
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=1.4e-35 Score=289.14 Aligned_cols=285 Identities=25% Similarity=0.308 Sum_probs=208.5
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCccc-ccCCcccCCCHhHHHH
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT-CVGANEERLTPKWYNE 83 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 83 (479)
|||+|||||+||++||..|+++|++ |+|||+++.. . .+........+|.+.. ..+......+.+.+++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~g--g------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 69 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLK---TLIIEGMEPG--G------QLTTTTEVENYPGFPEGISGPELMEKMKEQAVK 69 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCC---EEEEeccCCC--c------ceeecccccccCCCCCCCChHHHHHHHHHHHHH
Confidence 6999999999999999999999887 9999987521 0 0111111112232211 1111222345566778
Q ss_pred cCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCcccccccCCCCCC---CCCeEEecCHHHHHHHHHHHh
Q 011700 84 HGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALKLEEFGLSGSD---AENVCYLRDLADANRLVNVMK 158 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~---~~~v~~~~~~~~~~~l~~~l~ 158 (479)
++++++. ++|.+++++++ .+.+.++.++.||+||+|||+.|..|++ ||.+ ...+++...... .
T Consensus 70 ~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i---~g~~~~~~~~~~~~~~~~~-~------- 137 (300)
T TIGR01292 70 FGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGI---PGEDEFLGRGVSYCATCDG-P------- 137 (300)
T ss_pred cCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCC---CChhhcCCccEEEeeecCh-h-------
Confidence 8999998 68999988765 4556677889999999999999887766 4432 233433332221 0
Q ss_pred cCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhC-CcEEEcCCceEEEEEcCCCc
Q 011700 159 SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGK 237 (479)
Q Consensus 159 ~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~g~ 237 (479)
...+++++|||+|++|+|+|..|.+.+.+|+++.+.+.+.. .+ .+.+.++++ ||++++++.+++++. ++.
T Consensus 138 ~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~---~~----~~~~~l~~~~gv~~~~~~~v~~i~~--~~~ 208 (300)
T TIGR01292 138 FFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA---EK----ILLDRLRKNPNIEFLWNSTVKEIVG--DNK 208 (300)
T ss_pred hcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc---CH----HHHHHHHhCCCeEEEeccEEEEEEc--cCc
Confidence 11478999999999999999999999999999999876532 33 345566666 999999999999986 334
Q ss_pred EEEEEeC---CC--cEEeccEEEEecCCCCChhhhhccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeec
Q 011700 238 VVAVNLR---DG--NRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL 311 (479)
Q Consensus 238 v~~v~~~---~g--~~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~ 311 (479)
+..+.+. ++ +++++|.+++++|++|+.++++..+.. ++|++.||+++||++|+|||+|||+....
T Consensus 209 ~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~~~~~~~g~i~v~~~~~t~~~~vya~GD~~~~~~--------- 279 (300)
T TIGR01292 209 VEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGLLELDEGGYIVTDEGMRTSVPGVFAAGDVRDKGY--------- 279 (300)
T ss_pred EEEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHhheecCCCcEEECCCCccCCCCEEEeecccCcch---------
Confidence 4445442 23 579999999999999999877655444 56899999999999999999999997321
Q ss_pred ccHHHHHHHHHHHHHHHcC
Q 011700 312 EHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 312 ~~~~~A~~~g~~aa~~i~~ 330 (479)
..+..|+.||+.||.+|..
T Consensus 280 ~~~~~A~~~g~~aa~~i~~ 298 (300)
T TIGR01292 280 RQAVTAAGDGCIAALSAER 298 (300)
T ss_pred hhhhhhhhhHHHHHHHHHh
Confidence 4577899999999999863
No 49
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=4.9e-36 Score=312.02 Aligned_cols=290 Identities=24% Similarity=0.326 Sum_probs=209.7
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
.+||+||||||||++||.+|++.|++ |+||++.... .+... ....+++......+......+.+++++
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~---v~li~~~~GG---~~~~~------~~~~~~~~~~~~~~~~l~~~l~~~l~~ 279 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLR---TAMVAERIGG---QVKDT------VGIENLISVPYTTGSQLAANLEEHIKQ 279 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCC---ccccC------cCcccccccCCCCHHHHHHHHHHHHHH
Confidence 48999999999999999999999988 8899753211 00000 001111111111112222344566777
Q ss_pred cCcEEEeCceEEEEECCC--cEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCC
Q 011700 84 HGIELVLGTRVKSADVRR--KTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCS 161 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~--~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~ 161 (479)
++++++.+++|..++.+. ..+.+.+++.+.||++|+|||++|+.|+++|........++++...... + ..
T Consensus 280 ~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~ipG~~~~~~~~v~~~~~~~~~------~--~~ 351 (515)
T TIGR03140 280 YPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHCDGP------F--FK 351 (515)
T ss_pred hCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCCCCCCCHHHcCCCeEEEeeccChh------h--cC
Confidence 899999998999998765 4556677788999999999999988777633211122345444332211 1 14
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEE
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVA 240 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~ 240 (479)
+++++|||+|++|+|+|..|++.+.+||++++.+.+.. ...+.+.+++ +||++++++.+++++. +++++..
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~-------~~~l~~~l~~~~gV~i~~~~~v~~i~~-~~~~v~~ 423 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA-------DKVLQDKLKSLPNVDILTSAQTTEIVG-DGDKVTG 423 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh-------hHHHHHHHhcCCCCEEEECCeeEEEEc-CCCEEEE
Confidence 78999999999999999999999999999998876532 2345666665 6999999999999986 3456666
Q ss_pred EEeCC---C--cEEeccEEEEecCCCCChhhhhccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccH
Q 011700 241 VNLRD---G--NRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHV 314 (479)
Q Consensus 241 v~~~~---g--~~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~ 314 (479)
+.+.+ + +++++|.|++++|++|++++++..+.. ++|+|.||+++||++|+|||+|||+..+. ..+
T Consensus 424 v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~~~~~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~---------~~~ 494 (515)
T TIGR03140 424 IRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDAVELNRRGEIVIDERGRTSVPGIFAAGDVTTVPY---------KQI 494 (515)
T ss_pred EEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhhcccCCCCeEEECCCCCCCCCCEEEcccccCCcc---------ceE
Confidence 76643 2 469999999999999999988755555 56889999999999999999999998654 223
Q ss_pred HHHHHHHHHHHHHHcC
Q 011700 315 DSARKSAKHAVAAIME 330 (479)
Q Consensus 315 ~~A~~~g~~aa~~i~~ 330 (479)
..|+.+|..||.+|..
T Consensus 495 ~~A~~~G~~Aa~~i~~ 510 (515)
T TIGR03140 495 IIAMGEGAKAALSAFD 510 (515)
T ss_pred EEEEccHHHHHHHHHH
Confidence 4577888888888754
No 50
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-35 Score=278.66 Aligned_cols=287 Identities=27% Similarity=0.324 Sum_probs=216.2
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCccc-ccCCcccCCCHhHH
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT-CVGANEERLTPKWY 81 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 81 (479)
+.+||+|||||||||+||.+++|.+++. ++|+|+.....+ +.......++|++.. ..+........++.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~--~li~~~~~~gg~--------~~~~~~venypg~~~~~~g~~L~~~~~~~a 71 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKV--VLILEGGEPGGQ--------LTKTTDVENYPGFPGGILGPELMEQMKEQA 71 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCc--EEEEecCCcCCc--------cccceeecCCCCCccCCchHHHHHHHHHHH
Confidence 4699999999999999999999998774 566666533211 111113556666654 44444445556666
Q ss_pred HHcCcEEEeCceEEEEECCC--cEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhc
Q 011700 82 NEHGIELVLGTRVKSADVRR--KTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKS 159 (479)
Q Consensus 82 ~~~gv~~~~~~~v~~i~~~~--~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~ 159 (479)
...++++.. ..|..++... ..|.+.++. +++++||||||..++.|..++-+.....+++++..++. .+
T Consensus 72 ~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg--~~------ 141 (305)
T COG0492 72 EKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG--FF------ 141 (305)
T ss_pred hhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCc--cc------
Confidence 678999988 4788888764 566777776 99999999999999988764322223456777777544 11
Q ss_pred CCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhC-CcEEEcCCceEEEEEcCCCcE
Q 011700 160 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKV 238 (479)
Q Consensus 160 ~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~g~v 238 (479)
.+++++|||+|.+++|.|..|.+.+.+||+++|++.+.. .+.+ .+.++++ +|+++.++.+.++..+ + +
T Consensus 142 -~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra---~~~~----~~~l~~~~~i~~~~~~~i~ei~G~--~-v 210 (305)
T COG0492 142 -KGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA---EEIL----VERLKKNVKIEVLTNTVVKEILGD--D-V 210 (305)
T ss_pred -cCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc---CHHH----HHHHHhcCCeEEEeCCceeEEecC--c-c
Confidence 578999999999999999999999999999999988654 3333 4444444 8999999999999863 2 5
Q ss_pred EEEEeCCC----cEEeccEEEEecCCCCChhhhhccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeeccc
Q 011700 239 VAVNLRDG----NRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEH 313 (479)
Q Consensus 239 ~~v~~~~g----~~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~ 313 (479)
..+.+.+. +.+++|.+++++|..|++.+++....+ ++|+|.||+.++||+|+|||+|||+..+. .+
T Consensus 211 ~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~~~~~TsvpGifAaGDv~~~~~---------rq 281 (305)
T COG0492 211 EGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEEMETSVPGIFAAGDVADKNG---------RQ 281 (305)
T ss_pred ceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccccCCCCcEEcCCCcccCCCCEEEeEeeccCcc---------cE
Confidence 56666653 378999999999999999988765444 78999999999999999999999998764 23
Q ss_pred HHHHHHHHHHHHHHHc
Q 011700 314 VDSARKSAKHAVAAIM 329 (479)
Q Consensus 314 ~~~A~~~g~~aa~~i~ 329 (479)
+..|..+|..||.++.
T Consensus 282 i~ta~~~G~~Aa~~a~ 297 (305)
T COG0492 282 IATAAGDGAIAALSAE 297 (305)
T ss_pred EeehhhhHHHHHHHHH
Confidence 4456667777776654
No 51
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=9.6e-35 Score=304.49 Aligned_cols=291 Identities=23% Similarity=0.292 Sum_probs=204.6
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhH
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKW 80 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (479)
|.+.|||+||||||||++||.+|+++|++ |+|||++.... . +........+|++....+......+.+.
T Consensus 1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~---V~liE~~~~GG---~-----~~~~~~i~~~pg~~~~~~~~l~~~l~~~ 69 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLD---TLIIEKDDFGG---Q-----ITITSEVVNYPGILNTTGPELMQEMRQQ 69 (555)
T ss_pred CCCcCcEEEECCCHHHHHHHHHHHHCCCC---EEEEecCCCCc---e-----EEeccccccCCCCcCCCHHHHHHHHHHH
Confidence 66779999999999999999999999887 99999875311 0 0000111122222111111122233445
Q ss_pred HHHcCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHh
Q 011700 81 YNEHGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMK 158 (479)
Q Consensus 81 ~~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~ 158 (479)
+++.+++++. ++|..++.+++ .+.+.++ .+.+++||||||++|+.|+++|........++++......
T Consensus 70 ~~~~gv~~~~-~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~~~~-------- 139 (555)
T TIGR03143 70 AQDFGVKFLQ-AEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDGE-------- 139 (555)
T ss_pred HHHcCCEEec-cEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeecChh--------
Confidence 6678999874 58888887653 4445444 6899999999999999888743222223445554433221
Q ss_pred cCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcE
Q 011700 159 SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV 238 (479)
Q Consensus 159 ~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v 238 (479)
...+++++|||+|++|+|+|..|.++|.+|+++++.+.+.. ..... .+.++++||++++++.|+++.. ++.+
T Consensus 140 ~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~---~~~~~---~~~~~~~gV~i~~~~~V~~i~~--~~~v 211 (555)
T TIGR03143 140 FFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC---AKLIA---EKVKNHPKIEVKFNTELKEATG--DDGL 211 (555)
T ss_pred hcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc---CHHHH---HHHHhCCCcEEEeCCEEEEEEc--CCcE
Confidence 11589999999999999999999999999999999876532 33333 2334557999999999999975 3333
Q ss_pred EEEE---eCCCcEE----eccE----EEEecCCCCChhhhhccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccC
Q 011700 239 VAVN---LRDGNRL----PTDM----VVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLG 306 (479)
Q Consensus 239 ~~v~---~~~g~~i----~~D~----Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g 306 (479)
..+. ..+|++. ++|. |++++|++|++.+++..+.. ++|+|.||+++||++|+|||+|||+....
T Consensus 212 ~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~~l~l~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~---- 287 (555)
T TIGR03143 212 RYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKGVVELDKRGYIPTNEDMETNVPGVYAAGDLRPKEL---- 287 (555)
T ss_pred EEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhhhcccCCCCeEEeCCccccCCCCEEEceeccCCCc----
Confidence 3332 2456532 3676 99999999999998876666 46889999999999999999999975321
Q ss_pred ceeecccHHHHHHHHHHHHHHHc
Q 011700 307 ETRRLEHVDSARKSAKHAVAAIM 329 (479)
Q Consensus 307 ~~~~~~~~~~A~~~g~~aa~~i~ 329 (479)
..+..|..||+.||.+|.
T Consensus 288 -----~~v~~A~~~G~~Aa~~i~ 305 (555)
T TIGR03143 288 -----RQVVTAVADGAIAATSAE 305 (555)
T ss_pred -----chheeHHhhHHHHHHHHH
Confidence 345578999999998874
No 52
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=8.7e-35 Score=303.03 Aligned_cols=290 Identities=23% Similarity=0.300 Sum_probs=211.9
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
.|||+||||||||++||.+|++.|++ ++||++....... .......++.+....+......+.+.+++
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~---v~li~~~~GG~~~---------~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 278 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIR---TGIVAERFGGQVL---------DTMGIENFISVPETEGPKLAAALEEHVKE 278 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCeee---------ccCcccccCCCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999998 8898764211100 00011122222222222233445566778
Q ss_pred cCcEEEeCceEEEEECC--CcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCC
Q 011700 84 HGIELVLGTRVKSADVR--RKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCS 161 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~--~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~ 161 (479)
++++++.+++|.+++.. ...+.+.++.++.||+||+|||++|+.|++++........+++....... ..+
T Consensus 279 ~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~~~--------~~~ 350 (517)
T PRK15317 279 YDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGP--------LFK 350 (517)
T ss_pred CCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeeccCch--------hcC
Confidence 89999999899999876 34566677888999999999999998877633221222344444332211 115
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEE
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVA 240 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~ 240 (479)
+++++|||+|++|+|+|..|+..+.+|+++++.+.+.. + +.+.+.+.+ .||++++++.+.+++. +++++..
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~---~----~~l~~~l~~~~gI~i~~~~~v~~i~~-~~g~v~~ 422 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA---D----QVLQDKLRSLPNVTIITNAQTTEVTG-DGDKVTG 422 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc---c----HHHHHHHhcCCCcEEEECcEEEEEEc-CCCcEEE
Confidence 78999999999999999999999999999998876532 2 234555554 6999999999999986 3466666
Q ss_pred EEeCC---C--cEEeccEEEEecCCCCChhhhhccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccH
Q 011700 241 VNLRD---G--NRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHV 314 (479)
Q Consensus 241 v~~~~---g--~~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~ 314 (479)
+.+.+ + +++++|.+++++|++|++++++..+.. ++|+|.||+++||++|+|||+|||+..+. ..+
T Consensus 423 v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~v~~~~~g~i~vd~~l~Ts~p~IyAaGDv~~~~~---------k~~ 493 (517)
T PRK15317 423 LTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGTVELNRRGEIIVDARGATSVPGVFAAGDCTTVPY---------KQI 493 (517)
T ss_pred EEEEECCCCcEEEEEcCEEEEeECCccCchHHhhheeeCCCCcEEECcCCCCCCCCEEECccccCCCC---------CEE
Confidence 66543 3 369999999999999999988755555 56889999999999999999999998653 234
Q ss_pred HHHHHHHHHHHHHHcC
Q 011700 315 DSARKSAKHAVAAIME 330 (479)
Q Consensus 315 ~~A~~~g~~aa~~i~~ 330 (479)
..|+.+|..||.++..
T Consensus 494 ~~A~~eG~~Aa~~~~~ 509 (517)
T PRK15317 494 IIAMGEGAKAALSAFD 509 (517)
T ss_pred EEhhhhHHHHHHHHHH
Confidence 5678888888887754
No 53
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=100.00 E-value=3.4e-34 Score=293.30 Aligned_cols=285 Identities=24% Similarity=0.249 Sum_probs=204.9
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN 82 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (479)
+.++|+||||||||++||..|+++|++ |+|+|+++... +.+.. .+|.+.. .........+.++
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~---V~vie~~~~~G--------G~l~~----gip~~~~--~~~~~~~~~~~l~ 194 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHS---VTVFEALHKPG--------GVVTY----GIPEFRL--PKEIVVTEIKTLK 194 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCc---EEEEecCCCCC--------cEeee----cCCCccC--CHHHHHHHHHHHH
Confidence 357999999999999999999999887 99999985321 11100 0111100 0011122335577
Q ss_pred HcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCC-CcccccccCCCCCCCCCeEEecCHHHHHHHHHHHh---
Q 011700 83 EHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGA-RALKLEEFGLSGSDAENVCYLRDLADANRLVNVMK--- 158 (479)
Q Consensus 83 ~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~-~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~--- 158 (479)
+.|++++.++.+ .+.+.+.+. ...||+||||||+ .|+.|++ ||.+.+++++..++.+...+.....
T Consensus 195 ~~gv~~~~~~~v------~~~v~~~~~-~~~yd~viiAtGa~~p~~~~i---pG~~~~gv~~~~~~l~~~~~~~~~~~~~ 264 (449)
T TIGR01316 195 KLGVTFRMNFLV------GKTATLEEL-FSQYDAVFIGTGAGLPKLMNI---PGEELCGVYSANDFLTRANLMKAYEFPH 264 (449)
T ss_pred hCCcEEEeCCcc------CCcCCHHHH-HhhCCEEEEeCCCCCCCcCCC---CCCCCCCcEEHHHHHHHHhhcccccccc
Confidence 889999998643 233444332 3479999999998 6877766 7777777877665543322211110
Q ss_pred ----cCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcC
Q 011700 159 ----SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDS 234 (479)
Q Consensus 159 ----~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~ 234 (479)
...+++++|||+|++|+|+|..+.++|.+||++.+.++.... .. ....+.+++.||++++++.+.++..++
T Consensus 265 ~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~-~~----~~~~~~l~~~GV~~~~~~~~~~i~~~~ 339 (449)
T TIGR01316 265 ADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMT-AR----VEEIAHAEEEGVKFHFLCQPVEIIGDE 339 (449)
T ss_pred cCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCC-CC----HHHHHHHHhCCCEEEeccCcEEEEEcC
Confidence 124689999999999999999999999999999987652111 11 222355778999999999999998655
Q ss_pred CCcEEEEEeC---------CC-----------cEEeccEEEEecCCCCChhhhhc-cccc-ccCcEEEcCcccCCCCCeE
Q 011700 235 NGKVVAVNLR---------DG-----------NRLPTDMVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVY 292 (479)
Q Consensus 235 ~g~v~~v~~~---------~g-----------~~i~~D~Vi~a~G~~p~~~l~~~-~~~~-~~g~i~Vd~~l~t~~~~Iy 292 (479)
++++..+.+. +| +++++|.|++++|+.|++.+++. ++.. .+|+|.||+++||+.|+||
T Consensus 340 ~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~~Ts~~~Vf 419 (449)
T TIGR01316 340 EGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVF 419 (449)
T ss_pred CCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCCCccCCCCEE
Confidence 6766666543 22 26999999999999999987764 4665 5688999999999999999
Q ss_pred EEeeeccccccccCceeecccHHHHHHHHHHHHHHHc
Q 011700 293 AVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 329 (479)
Q Consensus 293 A~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 329 (479)
|+|||+..+ .++..|+.+|+.||.+|.
T Consensus 420 A~GD~~~g~----------~~v~~Ai~~G~~AA~~I~ 446 (449)
T TIGR01316 420 AGGDIILGA----------ATVIRAMGQGKRAAKSIN 446 (449)
T ss_pred EecCCCCCc----------HHHHHHHHHHHHHHHHHH
Confidence 999998654 357789999999999985
No 54
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-34 Score=269.97 Aligned_cols=403 Identities=27% Similarity=0.414 Sum_probs=302.2
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCC--cccccCCcccC--C---
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPS--FHTCVGANEER--L--- 76 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~--~--- 76 (479)
+.-.+|||+|.+..+++..... ....+.+.+|..++..||.||++++.+++..+...... |....|..... .
T Consensus 178 hvp~liigggtaAfaa~rai~s-~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~ 256 (659)
T KOG1346|consen 178 HVPYLIIGGGTAAFAAFRAIKS-NDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDG 256 (659)
T ss_pred cCceeEEcCCchhhhccccccc-CCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCc
Confidence 3468999999887776655544 44567899999999999999999999887655432221 22222222111 1
Q ss_pred ---CHhHH---HHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCC-CCCCeEEecCHHH
Q 011700 77 ---TPKWY---NEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGS-DAENVCYLRDLAD 149 (479)
Q Consensus 77 ---~~~~~---~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~-~~~~v~~~~~~~~ 149 (479)
..+.+ ..-||-+..|..|..|+.+.+.|.+.||.++.||+++||||.+|+.++.+.-.+. -...+.+++...|
T Consensus 257 FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~D 336 (659)
T KOG1346|consen 257 FFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPAD 336 (659)
T ss_pred ceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecchH
Confidence 11222 2347999999999999999999999999999999999999999988766322221 1356788889999
Q ss_pred HHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhh----CCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCC
Q 011700 150 ANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVI----NKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 225 (479)
Q Consensus 150 ~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~----~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~ 225 (479)
..++.+.+.+ .+++.|||+|++|-|+|..|.+ .|.+|+-+.....-+...+++.++++-.+.+++.||.++.+.
T Consensus 337 F~rlek~~ae--k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna 414 (659)
T KOG1346|consen 337 FKRLEKGLAE--KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNA 414 (659)
T ss_pred HHHHHHhhhh--cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccch
Confidence 9999888775 4899999999999999999976 478999888877777777888899999999999999999999
Q ss_pred ceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhhc-cccc--ccCcEEEcCcccCCCCCeEEEeeeccccc
Q 011700 226 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTL--EKGGIKVTGRLQSSNSSVYAVGDVAAFPL 302 (479)
Q Consensus 226 ~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~--~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~ 302 (479)
.|.++..+ .+. ..+.++||.++..|.|++|+|-.||+++.+. ++.. .=|++.||..|+. -.|||++||++.+..
T Consensus 415 ~v~sv~~~-~~n-l~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~a-r~NvwvAGdaacF~D 491 (659)
T KOG1346|consen 415 KVESVRKC-CKN-LVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKA-RENVWVAGDAACFED 491 (659)
T ss_pred hhhhhhhh-ccc-eEEEecCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheeec-ccceeeecchhhhhc
Confidence 99988763 233 3588999999999999999999999999875 4665 4589999999987 489999999999988
Q ss_pred cccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeec-CcceEeecCCCc------------------eEE
Q 011700 303 KLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVF-TLSWQFYGDNVG------------------EVV 363 (479)
Q Consensus 303 ~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~-~~~~~~~G~~~~------------------~~~ 363 (479)
...|. ++++|+.+|.-.|+.|.+||.+.. .+|....+||+... ++.+..+|+-.. ++.
T Consensus 492 ~~LGr-RRVehhdhavvSGRLAGENMtgAa--kpy~hqsmFWsdlgP~igyeaIGlvDSSLpTVgVfA~p~s~~~~~~~s 568 (659)
T KOG1346|consen 492 GVLGR-RRVEHHDHAVVSGRLAGENMTGAA--KPYKHQSMFWSDLGPEIGYEAIGLVDSSLPTVGVFALPSSATRVDQLS 568 (659)
T ss_pred ccccc-eeccccccceeeceeccccccccc--CCccccceeeeccCcccccceeeecccCCCcceeeeccccccchhhhh
Confidence 77665 456889999999999999998865 46666667776543 122333332100 000
Q ss_pred EEccC----------------------------C-CCceE---EEEccCCEEEEEEEeCCCHHHHHHHHHHHHcCCCcCc
Q 011700 364 HYGNF----------------------------S-GTTFG---AYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVED 411 (479)
Q Consensus 364 ~~~~~----------------------------~-~~~~~---~~~~~~~~i~G~~~~g~~~~e~~~~~~~i~~~~~~~d 411 (479)
...++ . ...|+ .|+.+|+.|+|..+++- -..+.....+|..+...+|
T Consensus 569 e~sdt~v~~~s~s~s~ss~~~~~~s~~~v~~~P~e~~~ygKgViFYl~d~~iVGilLwN~-Fnr~~~AR~II~d~kk~dd 647 (659)
T KOG1346|consen 569 ESSDTDVPETSTSSSQSSKSDAGASQDGVTCDPDEAGNYGKGVIFYLKDDKIVGILLWNL-FNRIGLARTIINDNKKYDD 647 (659)
T ss_pred hccCCCCccccccccccccccCCcCCCCCccCcccccccCceEEEEecCCcEEEEEehhh-hccchhhHHHhccccchhh
Confidence 00000 0 12243 46779999999999872 2256667788999999999
Q ss_pred HHHHh
Q 011700 412 LAELE 416 (479)
Q Consensus 412 l~~~~ 416 (479)
+.+..
T Consensus 648 lnEvA 652 (659)
T KOG1346|consen 648 LNEVA 652 (659)
T ss_pred HHHHH
Confidence 87764
No 55
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.2e-33 Score=289.63 Aligned_cols=287 Identities=22% Similarity=0.260 Sum_probs=205.1
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN 82 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (479)
+.+||+||||||||++||.+|+++|++ |+|+|+.+... +.+. ..+|.+... .........++++
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~---V~v~e~~~~~G--------G~l~----~gip~~~l~-~~~~~~~~~~~~~ 202 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYD---VTIFEALHEPG--------GVLV----YGIPEFRLP-KETVVKKEIENIK 202 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCe---EEEEecCCCCC--------Ceee----ecCCCccCC-ccHHHHHHHHHHH
Confidence 357999999999999999999999987 99999875311 1110 011221110 0101122345678
Q ss_pred HcCcEEEeCceEEEEECCCcEEEeCCC-cEEEeceEEeecCC-CcccccccCCCCCCCCCeEEecCHHHHHHHHHHH---
Q 011700 83 EHGIELVLGTRVKSADVRRKTLVTATG-ETISYKILIIATGA-RALKLEEFGLSGSDAENVCYLRDLADANRLVNVM--- 157 (479)
Q Consensus 83 ~~gv~~~~~~~v~~i~~~~~~v~~~~g-~~~~~d~lviAtG~-~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l--- 157 (479)
+.|++++.++.+. +.+.+.+. +.+.||+||||||+ .|+.+++ ||.+.+++++..++.+...+....
T Consensus 203 ~~gv~i~~~~~v~------~~v~~~~~~~~~~~d~viiAtGa~~~~~l~i---pG~~~~gV~~~~~~l~~~~~~~~~~~~ 273 (464)
T PRK12831 203 KLGVKIETNVVVG------KTVTIDELLEEEGFDAVFIGSGAGLPKFMGI---PGENLNGVFSANEFLTRVNLMKAYKPE 273 (464)
T ss_pred HcCCEEEcCCEEC------CcCCHHHHHhccCCCEEEEeCCCCCCCCCCC---CCcCCcCcEEHHHHHHHHHhccccccc
Confidence 8899999987542 22333332 34579999999998 5877776 777778888776654433221110
Q ss_pred ---hcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc-cccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEc
Q 011700 158 ---KSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH-CMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVD 233 (479)
Q Consensus 158 ---~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~ 233 (479)
....+++|+|||+|++|+|+|..+.++|.+||++.+.+. -++. .. ..+ +.+++.||++++++.+.++..+
T Consensus 274 ~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a----~~-~e~-~~a~~eGV~i~~~~~~~~i~~~ 347 (464)
T PRK12831 274 YDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPA----RV-EEV-HHAKEEGVIFDLLTNPVEILGD 347 (464)
T ss_pred ccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCC----CH-HHH-HHHHHcCCEEEecccceEEEec
Confidence 012579999999999999999999999999999998653 2222 11 111 2356789999999999999865
Q ss_pred CCCcEEEEEeC------------------CCc--EEeccEEEEecCCCCChhhhhc--cccc-ccCcEEEcCc-ccCCCC
Q 011700 234 SNGKVVAVNLR------------------DGN--RLPTDMVVVGIGIRPNTSLFEG--QLTL-EKGGIKVTGR-LQSSNS 289 (479)
Q Consensus 234 ~~g~v~~v~~~------------------~g~--~i~~D~Vi~a~G~~p~~~l~~~--~~~~-~~g~i~Vd~~-l~t~~~ 289 (479)
+++++..+++. +|+ ++++|.|++|+|+.|++.++.. ++.. ++|.|.||++ ++||.|
T Consensus 348 ~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~p 427 (464)
T PRK12831 348 ENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKE 427 (464)
T ss_pred CCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCccCCC
Confidence 56766655542 222 6999999999999999987754 4555 5688999998 999999
Q ss_pred CeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700 290 SVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 290 ~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~ 330 (479)
+|||+|||+..+ ..+..|+.+|+.||.+|..
T Consensus 428 gVfAaGD~~~g~----------~~v~~Ai~~G~~AA~~I~~ 458 (464)
T PRK12831 428 GVFAGGDAVTGA----------ATVILAMGAGKKAAKAIDE 458 (464)
T ss_pred CEEEeCCCCCCc----------hHHHHHHHHHHHHHHHHHH
Confidence 999999998754 3467899999999999854
No 56
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=100.00 E-value=1.6e-31 Score=272.26 Aligned_cols=385 Identities=29% Similarity=0.313 Sum_probs=294.5
Q ss_pred EEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHcCc
Q 011700 7 YVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEHGI 86 (479)
Q Consensus 7 vvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv 86 (479)
++|||+|++|+++|..+++.. +..+++++..++..+|.++.++............. ..... +..+.++
T Consensus 1 ivivG~g~aG~~aa~~l~~~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~-~~~~~~i 68 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLL-LAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDL----------RYPPR-FNRATGI 68 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcC-CCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHh----------cccch-hHHhhCC
Confidence 589999999999999988854 46779989888888887777655443322111100 01111 2346789
Q ss_pred EEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEE
Q 011700 87 ELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAV 166 (479)
Q Consensus 87 ~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vv 166 (479)
++..+++|..+|+.++++.+.++ ++.||+|++|||++|..++ +.....+++++...++..+...... .++++
T Consensus 69 ~~~~~~~v~~id~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~ 140 (415)
T COG0446 69 DVRTGTEVTSIDPENKVVLLDDG-EIEYDYLVLATGARPRPPP-----ISDWEGVVTLRLREDAEALKGGAEP--PKDVV 140 (415)
T ss_pred EEeeCCEEEEecCCCCEEEECCC-cccccEEEEcCCCcccCCC-----ccccCceEEECCHHHHHHHHHHHhc--cCeEE
Confidence 99999999999999999999888 8999999999999998775 3445678999999999888776653 58999
Q ss_pred EECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE--EEeC
Q 011700 167 VIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA--VNLR 244 (479)
Q Consensus 167 VIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~--v~~~ 244 (479)
|+|+|++|+|+|..+.+.|.+|++++..+++++..+.+++.+.+.+.++++||+++++..+.+++... +.... +...
T Consensus 141 vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~-~~~~~~~~~~~ 219 (415)
T COG0446 141 VVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKG-NTLVVERVVGI 219 (415)
T ss_pred EECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEccc-CcceeeEEEEe
Confidence 99999999999999999999999999999998873228999999999999999999999999998733 22222 5677
Q ss_pred CCcEEeccEEEEecCCCCChhhhhccc--cc-ccCcEEEcCcccCC-CCCeEEEeeeccccccccCceeecccHHHHHHH
Q 011700 245 DGNRLPTDMVVVGIGIRPNTSLFEGQL--TL-EKGGIKVTGRLQSS-NSSVYAVGDVAAFPLKLLGETRRLEHVDSARKS 320 (479)
Q Consensus 245 ~g~~i~~D~Vi~a~G~~p~~~l~~~~~--~~-~~g~i~Vd~~l~t~-~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~ 320 (479)
++..+++|.+++++|.+||+.+.+... .. .+|+|.||++++|+ .++|||+|||+..+....+.....+++..|..+
T Consensus 220 ~~~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~ 299 (415)
T COG0446 220 DGEEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAA 299 (415)
T ss_pred CCcEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhh
Confidence 888999999999999999988887654 33 67789999999997 999999999999877654455567889999999
Q ss_pred HHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCc-eE-------EEEccCC------CC---ce-EEEEccCCE
Q 011700 321 AKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-EV-------VHYGNFS------GT---TF-GAYWVNKGR 382 (479)
Q Consensus 321 g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~-~~-------~~~~~~~------~~---~~-~~~~~~~~~ 382 (479)
++.++.++.+. ......+++.+...+++.....|.+.. +. ...+... .. .. ..+..++++
T Consensus 300 ~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (415)
T COG0446 300 GRIAAENIAGA--LRIPGLLGTVISDVGDLCAASTGLTEGKERGIDVVLVVSGGKDPRAHLYPGAELVGIKLVGDADTGR 377 (415)
T ss_pred hHHHHHHhccc--cccccccCceEEEEcCeEEEEecCCcccccceeeeEEEeccCcccccccCCCCeEEEEEEEcCcccc
Confidence 99999999876 233455788888999998888888764 11 1111110 00 11 112336778
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHcCCCcCcHHHH
Q 011700 383 LVGSFLEGGTKEEYEAIAKATRLQPVVEDLAEL 415 (479)
Q Consensus 383 i~G~~~~g~~~~e~~~~~~~i~~~~~~~dl~~~ 415 (479)
++|++. -.....+..+..++..+.++.++..+
T Consensus 378 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (415)
T COG0446 378 ILGGQE-LEVLKRIGALALAIGLGDTVAELDAL 409 (415)
T ss_pred eehhhh-HHHHhhhhhhhhhhhhcCchhhhhhc
Confidence 888877 22223345567777777777766543
No 57
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=6e-32 Score=293.32 Aligned_cols=286 Identities=25% Similarity=0.291 Sum_probs=205.2
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN 82 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (479)
+.+||+||||||||++||.+|+++|++ |+|+|+.+... +.+. ..+|.+... ........+++.
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~---V~v~e~~~~~G--------G~l~----~gip~~rlp--~~~~~~~~~~l~ 492 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYD---VTVFEALHEIG--------GVLK----YGIPEFRLP--KKIVDVEIENLK 492 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCe---EEEEecCCCCC--------Ceee----ecCCCCCCC--HHHHHHHHHHHH
Confidence 357999999999999999999999987 99999874311 1111 011221110 011122345677
Q ss_pred HcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCC-CcccccccCCCCCCCCCeEEecCHHHHHHHHHHH----
Q 011700 83 EHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGA-RALKLEEFGLSGSDAENVCYLRDLADANRLVNVM---- 157 (479)
Q Consensus 83 ~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~-~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l---- 157 (479)
+.|++++.++.+ ++.+.+++.+...||+||||||+ .|+.+++ ||.+.+++++..++.....+....
T Consensus 493 ~~gv~~~~~~~v------~~~v~~~~l~~~~ydavvlAtGa~~~~~l~i---pG~~~~gV~~~~~~l~~~~~~~~~~~~~ 563 (752)
T PRK12778 493 KLGVKFETDVIV------GKTITIEELEEEGFKGIFIASGAGLPNFMNI---PGENSNGVMSSNEYLTRVNLMDAASPDS 563 (752)
T ss_pred HCCCEEECCCEE------CCcCCHHHHhhcCCCEEEEeCCCCCCCCCCC---CCCCCCCcEEHHHHHHHHhhcccccccc
Confidence 889999988643 23344444445679999999998 4777766 777778888766554432221110
Q ss_pred --hcCCCCCEEEECCChHHHHHHHHHhhCCCe-EEEEeecCc-cccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEc
Q 011700 158 --KSCSGGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAH-CMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVD 233 (479)
Q Consensus 158 --~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~-Vtlv~~~~~-~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~ 233 (479)
....+++|+|||+|++|+|+|..+.++|.+ ||++.+.+. .++. ...+ .+.+++.||++++++.+.++..+
T Consensus 564 ~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~-~~~e-----~~~~~~~GV~i~~~~~~~~i~~~ 637 (752)
T PRK12778 564 DTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPA-RLEE-----VKHAKEEGIEFLTLHNPIEYLAD 637 (752)
T ss_pred cCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHHH-----HHHHHHcCCEEEecCcceEEEEC
Confidence 012468999999999999999999999987 999998754 2332 1111 13467889999999999999875
Q ss_pred CCCcEEEEEeC---------CC-----------cEEeccEEEEecCCCCChhhhhc--cccc-ccCcEEEcCcccCCCCC
Q 011700 234 SNGKVVAVNLR---------DG-----------NRLPTDMVVVGIGIRPNTSLFEG--QLTL-EKGGIKVTGRLQSSNSS 290 (479)
Q Consensus 234 ~~g~v~~v~~~---------~g-----------~~i~~D~Vi~a~G~~p~~~l~~~--~~~~-~~g~i~Vd~~l~t~~~~ 290 (479)
+++++..+.+. +| +++++|.|++|+|++|+..+... ++.. .+|.|.||++++|+.|+
T Consensus 638 ~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~g 717 (752)
T PRK12778 638 EKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPG 717 (752)
T ss_pred CCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCCCCCCCC
Confidence 56776666542 22 25999999999999999876543 4555 56889999999999999
Q ss_pred eEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700 291 VYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 291 IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~ 330 (479)
|||+|||+..+ ..+..|+.+|+.||.+|..
T Consensus 718 VfA~GD~~~g~----------~~vv~Av~~G~~AA~~I~~ 747 (752)
T PRK12778 718 IYAGGDIVRGG----------ATVILAMGDGKRAAAAIDE 747 (752)
T ss_pred EEEeCCccCCc----------HHHHHHHHHHHHHHHHHHH
Confidence 99999999754 3467899999999999864
No 58
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=100.00 E-value=1.1e-31 Score=288.43 Aligned_cols=295 Identities=24% Similarity=0.335 Sum_probs=200.5
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
.++|+||||||||++||.+|+++|++ |+|+|+.+.. + +.+. ..+|.+... ........+++.+
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~---VtV~Ek~~~~-G-------G~lr----~~IP~~Rlp--~evL~~die~l~~ 601 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHP---VTVFEREENA-G-------GVVK----NIIPQFRIP--AELIQHDIEFVKA 601 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCe---EEEEeccccc-C-------ccee----eeccccccc--HHHHHHHHHHHHH
Confidence 47899999999999999999999987 9999998642 1 1111 012222110 0111223356778
Q ss_pred cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCc-ccccccCCCCCCCCCeEEecC-HHHHHHHHHHHhcCC
Q 011700 84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARA-LKLEEFGLSGSDAENVCYLRD-LADANRLVNVMKSCS 161 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~-~~~~~~g~~g~~~~~v~~~~~-~~~~~~l~~~l~~~~ 161 (479)
.|++++.++.+ .++. .+.+...||+||||||+++ ..+++ +|.+ +++++..+ +.+.......+ ..
T Consensus 602 ~GVe~~~gt~V-di~l-------e~L~~~gYDaVILATGA~~~~~l~I---pG~~-~gV~saldfL~~~k~~~~~~--~~ 667 (1019)
T PRK09853 602 HGVKFEFGCSP-DLTV-------EQLKNEGYDYVVVAIGADKNGGLKL---EGGN-QNVIKALPFLEEYKNKGTAL--KL 667 (1019)
T ss_pred cCCEEEeCcee-EEEh-------hhheeccCCEEEECcCCCCCCCCCC---CCcc-CCceehHHHHHHHhhhcccc--cC
Confidence 89999999765 2222 2334456999999999985 33343 6543 34443211 11111111111 14
Q ss_pred CCCEEEECCChHHHHHHHHHhhC-C-CeEEEEeecCc-cccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcE
Q 011700 162 GGNAVVIGGGYIGMECAASLVIN-K-INVTMVFPEAH-CMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV 238 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~-g-~~Vtlv~~~~~-~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v 238 (479)
+++|+|||+|++|+|+|..+.+. | .+|+++.|++. .++. .++++ .+.+ +.||+++..+.+.+++. ++++
T Consensus 668 GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA-~~eEl----e~Al-eeGVe~~~~~~p~~I~~--dG~l 739 (1019)
T PRK09853 668 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPA-WREEY----EEAL-EDGVEFKELLNPESFDA--DGTL 739 (1019)
T ss_pred CCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccc-cHHHH----HHHH-HcCCEEEeCCceEEEEc--CCcE
Confidence 79999999999999999998887 4 48999998763 4443 33333 3333 46999999998888863 3322
Q ss_pred E----------------EEEeCCCcEEeccEEEEecCCCCChhhhhc-cccc-ccCcEEEcCcccCCCCCeEEEeeeccc
Q 011700 239 V----------------AVNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAF 300 (479)
Q Consensus 239 ~----------------~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~ 300 (479)
. .+...++.++++|.||+|+|.+|++++++. ++.. .+|+|.||+++||+.|+|||+|||+..
T Consensus 740 ~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G~I~VDetlqTs~pgVFAaGD~a~G 819 (1019)
T PRK09853 740 TCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRG 819 (1019)
T ss_pred EEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhcCccccCCCCEEeCCCcccCCCCEEEEeccccC
Confidence 1 122233468999999999999999998754 4655 568899999999999999999999865
Q ss_pred cccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeec
Q 011700 301 PLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVF 348 (479)
Q Consensus 301 ~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~ 348 (479)
+ ..+..|+.+|+.||++|.+... ..+...|.+++..+
T Consensus 820 p----------~tvv~Ai~qGr~AA~nI~~~~~-~~~~~~~~~~~~~~ 856 (1019)
T PRK09853 820 P----------STIVAAIADARRAADAILSREG-IRSHQNDKYWNNVE 856 (1019)
T ss_pred c----------hHHHHHHHHHHHHHHHHhhhcC-CCcccccccccccc
Confidence 5 3567899999999999987543 34555565555444
No 59
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.98 E-value=4.1e-31 Score=271.94 Aligned_cols=283 Identities=25% Similarity=0.278 Sum_probs=196.7
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
.++|+||||||||+++|..|+++|++ |+|+|+++... +++.. .+|.+.. .........+++++
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~---V~lie~~~~~g--------G~l~~----gip~~~~--~~~~~~~~~~~l~~ 202 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYD---VTIFEARDKAG--------GLLRY----GIPEFRL--PKDIVDREVERLLK 202 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCe---EEEEccCCCCC--------cEeec----cCCCccC--CHHHHHHHHHHHHH
Confidence 47999999999999999999999876 99999986421 11100 1111110 01111233456778
Q ss_pred cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCC-cccccccCCCCCCCCCeEEecCHHHHHHHHHHHhc-CC
Q 011700 84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGAR-ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKS-CS 161 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~-~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~-~~ 161 (479)
.|++++.++.+. +.+.+.+. .+.||+||||||+. |..+++ +|.+.+++++..++............ ..
T Consensus 203 ~gv~~~~~~~v~------~~v~~~~~-~~~~d~vvlAtGa~~~~~~~i---~G~~~~gv~~~~~~l~~~~~~~~~~~~~~ 272 (457)
T PRK11749 203 LGVEIRTNTEVG------RDITLDEL-RAGYDAVFIGTGAGLPRFLGI---PGENLGGVYSAVDFLTRVNQAVADYDLPV 272 (457)
T ss_pred cCCEEEeCCEEC------CccCHHHH-HhhCCEEEEccCCCCCCCCCC---CCccCCCcEEHHHHHHHHhhccccccCCC
Confidence 899999986542 22223222 37899999999986 555555 66666666654433222111000011 14
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCC-eEEEEeecCc-cccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEE
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAH-CMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV 239 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~-~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~ 239 (479)
+++++|||+|++|+|+|..+.+.|. +|+++.+.+. .++. ... ..+.+++.||++++++.+.++..+ ++.+.
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~--~~~----~~~~~~~~GV~i~~~~~v~~i~~~-~~~~~ 345 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPA--SEE----EVEHAKEEGVEFEWLAAPVEILGD-EGRVT 345 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC--CHH----HHHHHHHCCCEEEecCCcEEEEec-CCceE
Confidence 7999999999999999999999987 8999998754 3332 222 245678899999999999999863 33322
Q ss_pred EEEeC-------------------CCcEEeccEEEEecCCCCChhhhhc--cccc-ccCcEEEcC-cccCCCCCeEEEee
Q 011700 240 AVNLR-------------------DGNRLPTDMVVVGIGIRPNTSLFEG--QLTL-EKGGIKVTG-RLQSSNSSVYAVGD 296 (479)
Q Consensus 240 ~v~~~-------------------~g~~i~~D~Vi~a~G~~p~~~l~~~--~~~~-~~g~i~Vd~-~l~t~~~~IyA~GD 296 (479)
.+.+. +++++++|.|++++|++|+..++.. ++.. ++|+|.||+ +++|+.|+|||+||
T Consensus 346 ~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD 425 (457)
T PRK11749 346 GVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGD 425 (457)
T ss_pred EEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCC
Confidence 33321 2347999999999999999887643 3555 578899998 89999999999999
Q ss_pred eccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700 297 VAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 297 ~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~ 330 (479)
|+..+ ..+..|+.+|+.||.+|..
T Consensus 426 ~~~~~----------~~~~~A~~~G~~aA~~I~~ 449 (457)
T PRK11749 426 IVTGA----------ATVVWAVGDGKDAAEAIHE 449 (457)
T ss_pred cCCCc----------hHHHHHHHHHHHHHHHHHH
Confidence 99543 3577899999999999864
No 60
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.98 E-value=6.9e-31 Score=286.90 Aligned_cols=285 Identities=21% Similarity=0.221 Sum_probs=203.3
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
.++|+|||||||||+||.+|+++|++ |+|+|+.+.. .+++. ..+|.+... ........+.+++
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~---VtVfE~~~~~--------GG~l~----yGIP~~rlp--~~vi~~~i~~l~~ 368 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFP---VTVFEAFHDL--------GGVLR----YGIPEFRLP--NQLIDDVVEKIKL 368 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCe---EEEEeeCCCC--------CceEE----ccCCCCcCh--HHHHHHHHHHHHh
Confidence 57999999999999999999999997 9999998531 12221 113332210 1111223456778
Q ss_pred cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCC-cccccccCCCCCCCCCeEEecCHHHHHHHHHHH-----
Q 011700 84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGAR-ALKLEEFGLSGSDAENVCYLRDLADANRLVNVM----- 157 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~-~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l----- 157 (479)
.|++++.++.+ ++.+.+++.....||+|+||||+. |+.+++ ||.+.++|++..++..........
T Consensus 369 ~Gv~f~~n~~v------G~dit~~~l~~~~yDAV~LAtGA~~pr~l~I---pG~dl~GV~~a~dfL~~~~~~~~~~~~~~ 439 (944)
T PRK12779 369 LGGRFVKNFVV------GKTATLEDLKAAGFWKIFVGTGAGLPTFMNV---PGEHLLGVMSANEFLTRVNLMRGLDDDYE 439 (944)
T ss_pred hcCeEEEeEEe------ccEEeHHHhccccCCEEEEeCCCCCCCcCCC---CCCcCcCcEEHHHHHHHHHhhcccccccc
Confidence 89999988543 344555555556799999999995 777766 887888888766654433221111
Q ss_pred ---hcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc-cccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEc
Q 011700 158 ---KSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH-CMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVD 233 (479)
Q Consensus 158 ---~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~ 233 (479)
....+++|+|||||++|+|+|..+.+.|.+|+++.+++. .++. ..+.+.+ ..+.||+++.+..+.+|..+
T Consensus 440 ~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa-----~~~e~~~-a~eeGV~~~~~~~p~~i~~d 513 (944)
T PRK12779 440 TPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPA-----RVEELHH-ALEEGINLAVLRAPREFIGD 513 (944)
T ss_pred ccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccc-----cHHHHHH-HHHCCCEEEeCcceEEEEec
Confidence 112478999999999999999999999999999988753 2221 1122333 34679999999999999764
Q ss_pred CC-CcEEEEEe---------C--------CC--cEEeccEEEEecCCCCChhhhhc--cccc-ccCcEEEcC-cccCCCC
Q 011700 234 SN-GKVVAVNL---------R--------DG--NRLPTDMVVVGIGIRPNTSLFEG--QLTL-EKGGIKVTG-RLQSSNS 289 (479)
Q Consensus 234 ~~-g~v~~v~~---------~--------~g--~~i~~D~Vi~a~G~~p~~~l~~~--~~~~-~~g~i~Vd~-~l~t~~~ 289 (479)
++ +++..+.+ . +| .++++|.||+|+|+.|+..+... ++.. ++|.|.||+ +++||.|
T Consensus 514 ~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~p 593 (944)
T PRK12779 514 DHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIK 593 (944)
T ss_pred CCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCccCCC
Confidence 33 34544432 1 12 36999999999999999865443 3554 568899996 5899999
Q ss_pred CeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700 290 SVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 290 ~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~ 330 (479)
+|||+|||+..+ .++..|+.+|+.||.+|..
T Consensus 594 gVFAaGD~~~G~----------~~vv~Ai~eGr~AA~~I~~ 624 (944)
T PRK12779 594 GVYSGGDAARGG----------STAIRAAGDGQAAAKEIVG 624 (944)
T ss_pred CEEEEEcCCCCh----------HHHHHHHHHHHHHHHHHHH
Confidence 999999999754 3577899999999999864
No 61
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.98 E-value=4.5e-31 Score=262.72 Aligned_cols=288 Identities=25% Similarity=0.294 Sum_probs=196.1
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
.++|+|||+|++|+++|..|++.|++ |+++|+.+... +.+... .+.+.. .........+.+.+
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~~g--------g~~~~~----~~~~~~--~~~~~~~~~~~l~~ 80 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYE---VHVYDKLPEPG--------GLMLFG----IPEFRI--PIERVREGVKELEE 80 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCc---EEEEeCCCCCC--------ceeeec----Cccccc--CHHHHHHHHHHHHh
Confidence 47999999999999999999998876 99999986421 111000 010000 00001122344556
Q ss_pred cCcEEEeCceEEEEEC----CCcEE--Ee--CCCcEEEeceEEeecCCC-cccccccCCCCCCCCCeEEecCHHHHHHHH
Q 011700 84 HGIELVLGTRVKSADV----RRKTL--VT--ATGETISYKILIIATGAR-ALKLEEFGLSGSDAENVCYLRDLADANRLV 154 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~----~~~~v--~~--~~g~~~~~d~lviAtG~~-~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~ 154 (479)
.+++++.++.+..++. +.... .. .++..+.||+||||||+. |+.|++ ||.+.+++++..+ ....+.
T Consensus 81 ~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~~~~i---pg~~~~~v~~~~~--~~~~~~ 155 (352)
T PRK12770 81 AGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSRKLGI---PGEDLPGVYSALE--YLFRIR 155 (352)
T ss_pred CCeEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCCCCCcCCC---CCccccCceeHHH--HHHHhh
Confidence 7999999877754432 01111 11 112247899999999994 666666 6666666665322 222211
Q ss_pred HH------Hh---cCCCCCEEEECCChHHHHHHHHHhhCCCe-EEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcC
Q 011700 155 NV------MK---SCSGGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKG 224 (479)
Q Consensus 155 ~~------l~---~~~~~~vvVIGgG~~g~E~A~~l~~~g~~-Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~ 224 (479)
.. .. ...+++++|||+|++|+|+|..|...|.+ |+++.+.+..... .. ....+.|+++||+++++
T Consensus 156 ~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~-~~----~~~~~~l~~~gi~i~~~ 230 (352)
T PRK12770 156 AAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAP-AG----KYEIERLIARGVEFLEL 230 (352)
T ss_pred hccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCC-CC----HHHHHHHHHcCCEEeec
Confidence 10 00 11258999999999999999999999987 9999887543211 11 33445688999999999
Q ss_pred CceEEEEEcCCCcEEEEEe--------------------CCCcEEeccEEEEecCCCCChhhhhc--cccc-ccCcEEEc
Q 011700 225 TVLSSFDVDSNGKVVAVNL--------------------RDGNRLPTDMVVVGIGIRPNTSLFEG--QLTL-EKGGIKVT 281 (479)
Q Consensus 225 ~~v~~i~~~~~g~v~~v~~--------------------~~g~~i~~D~Vi~a~G~~p~~~l~~~--~~~~-~~g~i~Vd 281 (479)
+.+.+++. ++++..+.+ .+++++++|.|++++|++|++.+... ++.. .+|+|.||
T Consensus 231 ~~v~~i~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~vd 308 (352)
T PRK12770 231 VTPVRIIG--EGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIVVD 308 (352)
T ss_pred cCceeeec--CCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEeeC
Confidence 99999975 233333332 12357999999999999999987663 4555 56789999
Q ss_pred CcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700 282 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 282 ~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~ 330 (479)
++++|+.|+|||+|||+..+ ..+..|+.+|+.||.+|..
T Consensus 309 ~~~~t~~~~vyaiGD~~~~~----------~~~~~A~~~g~~aa~~i~~ 347 (352)
T PRK12770 309 EKHMTSREGVFAAGDVVTGP----------SKIGKAIKSGLRAAQSIHE 347 (352)
T ss_pred CCcccCCCCEEEEcccccCc----------chHHHHHHHHHHHHHHHHH
Confidence 99999999999999999754 3467899999999999864
No 62
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.97 E-value=4.8e-30 Score=282.77 Aligned_cols=284 Identities=21% Similarity=0.245 Sum_probs=199.1
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
.++|+|||||||||+||.+|+++|++ |+|+|+.+... +++. ..+|.+.. ..+......+++.+
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~---VtV~E~~~~~G--------G~l~----~gip~~rl--~~e~~~~~~~~l~~ 492 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVD---VTVYEALHVVG--------GVLQ----YGIPSFRL--PRDIIDREVQRLVD 492 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCCc--------ceee----ccCCccCC--CHHHHHHHHHHHHH
Confidence 47999999999999999999999987 99999875421 1111 11222210 01112234566778
Q ss_pred cCcEEEeCceEEEEECCCcEEEeCCCc-EEEeceEEeecCCC-cccccccCCCCCCCCCeEEecCHHHHHHHHHHH----
Q 011700 84 HGIELVLGTRVKSADVRRKTLVTATGE-TISYKILIIATGAR-ALKLEEFGLSGSDAENVCYLRDLADANRLVNVM---- 157 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~-~~~~d~lviAtG~~-~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l---- 157 (479)
.|++++.++.+ . +.+.+.+-. ...||+||||||+. |+.+++ ||.+.+++++..++.....+....
T Consensus 493 ~Gv~~~~~~~v-g-----~~~~~~~l~~~~~yDaViIATGa~~pr~l~I---pG~~l~gV~~a~~fL~~~~~~~~~~~~~ 563 (1006)
T PRK12775 493 IGVKIETNKVI-G-----KTFTVPQLMNDKGFDAVFLGVGAGAPTFLGI---PGEFAGQVYSANEFLTRVNLMGGDKFPF 563 (1006)
T ss_pred CCCEEEeCCcc-C-----CccCHHHHhhccCCCEEEEecCCCCCCCCCC---CCcCCCCcEEHHHHHHHHHhcCcccccc
Confidence 99999998533 1 222221111 24699999999995 777776 777777887765544332221000
Q ss_pred ---hcCCCCCEEEECCChHHHHHHHHHhhCCC-eEEEEeecCcc-ccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEE
Q 011700 158 ---KSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHC-MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 232 (479)
Q Consensus 158 ---~~~~~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~ 232 (479)
....+++|+|||+|++|+++|..+.++|. .|+++.+.... ++. .++ . .+.+++.||++++++.+.++..
T Consensus 564 ~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a--~~~---e-~~~a~eeGI~~~~~~~p~~i~~ 637 (1006)
T PRK12775 564 LDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPA--RIE---E-IRHAKEEGIDFFFLHSPVEIYV 637 (1006)
T ss_pred ccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCC--CHH---H-HHHHHhCCCEEEecCCcEEEEe
Confidence 01257999999999999999999999987 48888765432 221 111 1 2346778999999999999986
Q ss_pred cCCCcEEEEEeC-----------------CC--cEEeccEEEEecCCCCChhhhhc--cccc-ccCcEEEcC-----ccc
Q 011700 233 DSNGKVVAVNLR-----------------DG--NRLPTDMVVVGIGIRPNTSLFEG--QLTL-EKGGIKVTG-----RLQ 285 (479)
Q Consensus 233 ~~~g~v~~v~~~-----------------~g--~~i~~D~Vi~a~G~~p~~~l~~~--~~~~-~~g~i~Vd~-----~l~ 285 (479)
+++|++..+.+. +| .++++|.|++|+|+.|++.+... ++.. .+|.|.+|+ +++
T Consensus 638 ~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~ 717 (1006)
T PRK12775 638 DAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQS 717 (1006)
T ss_pred CCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcC
Confidence 567777666542 12 26999999999999999886543 4555 567899996 789
Q ss_pred CCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHc
Q 011700 286 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 329 (479)
Q Consensus 286 t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 329 (479)
||+|+|||+|||+..+ .++..|+.+|+.||.+|.
T Consensus 718 Ts~pgVFAaGDv~~G~----------~~vv~Ai~~Gr~AA~~I~ 751 (1006)
T PRK12775 718 TNLPGVFAGGDIVTGG----------ATVILAMGAGRRAARSIA 751 (1006)
T ss_pred CCCCCEEEecCcCCCc----------cHHHHHHHHHHHHHHHHH
Confidence 9999999999998754 356789999999999875
No 63
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.97 E-value=5.2e-30 Score=244.11 Aligned_cols=295 Identities=21% Similarity=0.295 Sum_probs=216.0
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN 82 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (479)
++++|||+|.|.+|.+....|-...+ +|++|++..++.|. |.++.... ...++... .+......+
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~Y---dV~vVSPRnyFlFT-PLLpS~~v---GTve~rSI--------vEPIr~i~r 118 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLY---DVTVVSPRNYFLFT-PLLPSTTV---GTVELRSI--------VEPIRAIAR 118 (491)
T ss_pred CCceEEEEcCchHHHHHHHhcccccc---ceEEeccccceEEe-eccCCccc---cceeehhh--------hhhHHHHhh
Confidence 46799999999999999888766444 49999999876553 22111000 00011110 122233333
Q ss_pred Hc--CcEEEeCceEEEEECCCcEEEe----CCC----cEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHH
Q 011700 83 EH--GIELVLGTRVKSADVRRKTLVT----ATG----ETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANR 152 (479)
Q Consensus 83 ~~--gv~~~~~~~v~~i~~~~~~v~~----~~g----~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~ 152 (479)
.. ++.++.. +.+.+|+++++|+. .++ ..+.||+||+|+|+.+..+.+ ||.. ++.+.++..+++++
T Consensus 119 ~k~~~~~y~eA-ec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgi---pGV~-e~~~FLKEv~dAqe 193 (491)
T KOG2495|consen 119 KKNGEVKYLEA-ECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGI---PGVE-ENAHFLKEVEDAQE 193 (491)
T ss_pred ccCCCceEEec-ccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCC---Cchh-hchhhhhhhhHHHH
Confidence 33 5777765 77889999998875 233 468999999999999877666 6643 67788999999998
Q ss_pred HHHHHhcC---------------CCCCEEEECCChHHHHHHHHHhhC--------------CCeEEEEeecCccccccCC
Q 011700 153 LVNVMKSC---------------SGGNAVVIGGGYIGMECAASLVIN--------------KINVTMVFPEAHCMARLFT 203 (479)
Q Consensus 153 l~~~l~~~---------------~~~~vvVIGgG~~g~E~A~~l~~~--------------g~~Vtlv~~~~~~l~~~~~ 203 (479)
++..+-.+ +--++||||||+.|+|+|.+|+.+ -.+||+++..|++|+. ||
T Consensus 194 IR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~m-Fd 272 (491)
T KOG2495|consen 194 IRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNM-FD 272 (491)
T ss_pred HHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHH-HH
Confidence 86654321 123689999999999999999752 4689999999999995 99
Q ss_pred HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC--cEEeccEEEEecCCCCChhhh--hccccc-ccCcE
Q 011700 204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTSLF--EGQLTL-EKGGI 278 (479)
Q Consensus 204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~Vi~a~G~~p~~~l~--~~~~~~-~~g~i 278 (479)
..+.++.++.+.+.||++.+++.|..++. .. ..+...|| ++|++.+++|+||..|..-.- ...+.. .+.++
T Consensus 273 krl~~yae~~f~~~~I~~~~~t~Vk~V~~---~~-I~~~~~~g~~~~iPYG~lVWatG~~~rp~~k~lm~~i~e~~rr~L 348 (491)
T KOG2495|consen 273 KRLVEYAENQFVRDGIDLDTGTMVKKVTE---KT-IHAKTKDGEIEEIPYGLLVWATGNGPRPVIKDLMKQIDEQGRRGL 348 (491)
T ss_pred HHHHHHHHHHhhhccceeecccEEEeecC---cE-EEEEcCCCceeeecceEEEecCCCCCchhhhhHhhcCCccCceee
Confidence 99999999999999999999999998864 22 23444455 579999999999988765422 112222 24489
Q ss_pred EEcCcccC-CCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHc
Q 011700 279 KVTGRLQS-SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 329 (479)
Q Consensus 279 ~Vd~~l~t-~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 329 (479)
.||++||. +.+||||+|||+..+.. .++++.|.+||.++|+++-
T Consensus 349 ~vDE~LrV~G~~nvfAiGDca~~~~~-------~~tAQVA~QqG~yLAk~fn 393 (491)
T KOG2495|consen 349 AVDEWLRVKGVKNVFAIGDCADQRGL-------KPTAQVAEQQGAYLAKNFN 393 (491)
T ss_pred eeeceeeccCcCceEEeccccccccC-------ccHHHHHHHHHHHHHHHHH
Confidence 99999998 89999999999944322 2578899999999999874
No 64
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.97 E-value=1e-29 Score=261.98 Aligned_cols=289 Identities=25% Similarity=0.322 Sum_probs=195.6
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
.++|+|||+||||++||..|+++|++ |+|+|+++... +++. ..+|.+.. .........+++.+
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~---V~vie~~~~~G--------G~l~----~gip~~~~--~~~~~~~~~~~~~~ 205 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHK---VTVFERADRIG--------GLLR----YGIPDFKL--EKEVIDRRIELMEA 205 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCc---EEEEecCCCCC--------ceee----ecCCcccC--CHHHHHHHHHHHHh
Confidence 47999999999999999999999987 99999986421 1111 01121110 00111223456778
Q ss_pred cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCC-cccccccCCCCCCCCCeEEecCHHHHH--HHHHH----
Q 011700 84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGAR-ALKLEEFGLSGSDAENVCYLRDLADAN--RLVNV---- 156 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~-~~~~~~~g~~g~~~~~v~~~~~~~~~~--~l~~~---- 156 (479)
.|++++.++.+. .+... +.....||+||+|||+. |+.+++ +|.+..++++..++.... .+...
T Consensus 206 ~gv~~~~~~~v~-~~~~~------~~~~~~~d~vvlAtGa~~~~~l~i---pG~~~~gV~~~~~~l~~~~~~~~~~~~~~ 275 (471)
T PRK12810 206 EGIEFRTNVEVG-KDITA------EELLAEYDAVFLGTGAYKPRDLGI---PGRDLDGVHFAMDFLIQNTRRVLGDETEP 275 (471)
T ss_pred CCcEEEeCCEEC-CcCCH------HHHHhhCCEEEEecCCCCCCcCCC---CCccCCCcEEHHHHHHHHHhhhccccccc
Confidence 899999986542 22111 11235799999999997 666665 777777777643321110 00000
Q ss_pred HhcCCCCCEEEECCChHHHHHHHHHhhCCC-eEEEEeecCccccccCC----HHHH-HHHHHHHHhCCcEEEcCCceEEE
Q 011700 157 MKSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMARLFT----PKIA-SYYEEYYKSKGVKFVKGTVLSSF 230 (479)
Q Consensus 157 l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~l~~~~~----~~~~-~~~~~~l~~~GV~i~~~~~v~~i 230 (479)
.....+++++|||+|++|+|+|..+.+.|. +|+++++.+......++ +... ....+.+++.||++++++.+++|
T Consensus 276 ~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i 355 (471)
T PRK12810 276 FISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEF 355 (471)
T ss_pred cccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEE
Confidence 011257899999999999999998888875 78976655432221101 0011 11345567889999999999999
Q ss_pred EEcCCCcEEEEEeC-----CC---------cEEeccEEEEecCCCCChh-hhhc-cccc-ccCcEEEc-CcccCCCCCeE
Q 011700 231 DVDSNGKVVAVNLR-----DG---------NRLPTDMVVVGIGIRPNTS-LFEG-QLTL-EKGGIKVT-GRLQSSNSSVY 292 (479)
Q Consensus 231 ~~~~~g~v~~v~~~-----~g---------~~i~~D~Vi~a~G~~p~~~-l~~~-~~~~-~~g~i~Vd-~~l~t~~~~Iy 292 (479)
.. +++++..|++. +| +++++|.||+|+|++|+.. +++. ++.. ++|.+.+| ++++|+.|+||
T Consensus 356 ~~-~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVf 434 (471)
T PRK12810 356 EG-ENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVF 434 (471)
T ss_pred Ec-cCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEE
Confidence 75 46776655432 22 4799999999999999853 5543 4555 46889998 79999999999
Q ss_pred EEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700 293 AVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 293 A~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~ 330 (479)
|+|||+..+ ..+..|+.+|+.||.+|..
T Consensus 435 a~GD~~~g~----------~~~~~Av~~G~~AA~~i~~ 462 (471)
T PRK12810 435 AAGDMRRGQ----------SLVVWAIAEGRQAARAIDA 462 (471)
T ss_pred EccccCCCc----------hhHHHHHHHHHHHHHHHHH
Confidence 999999753 3467899999999999864
No 65
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.97 E-value=3.5e-29 Score=270.67 Aligned_cols=280 Identities=24% Similarity=0.344 Sum_probs=187.3
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
.+||+||||||||++||.+|+++|++ |+|+|+++.. + +.+.. .+|.+... ........+++.+
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~---VTV~Ek~~~l-G-------G~l~~----~IP~~rlp--~e~l~~~ie~l~~ 599 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHP---VTVFEKKEKP-G-------GVVKN----IIPEFRIS--AESIQKDIELVKF 599 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCe---EEEEeccccc-C-------ceeee----cccccCCC--HHHHHHHHHHHHh
Confidence 47999999999999999999999987 9999998642 1 11100 01221100 0111223356677
Q ss_pred cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHH-hcCCC
Q 011700 84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVM-KSCSG 162 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l-~~~~~ 162 (479)
.||+++.++.. .+.+.+.+...||+||||||+++..+. +++|.+ ++++. ..+.+..+.... ....+
T Consensus 600 ~GVe~~~g~~~--------d~~ve~l~~~gYDaVIIATGA~~~~~l--~I~G~~-~~v~~--avefL~~~~~~~~~~~~G 666 (1012)
T TIGR03315 600 HGVEFKYGCSP--------DLTVAELKNQGYKYVILAIGAWKHGPL--RLEGGG-ERVLK--SLEFLRAFKEGPTINPLG 666 (1012)
T ss_pred cCcEEEEeccc--------ceEhhhhhcccccEEEECCCCCCCCCC--CcCCCC-cceee--HHHHHHHhhccccccccC
Confidence 89999887421 112223334679999999999853321 235533 33432 222222221110 01258
Q ss_pred CCEEEECCChHHHHHHHHHhhC-CC-eEEEEeecCc-cccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEE
Q 011700 163 GNAVVIGGGYIGMECAASLVIN-KI-NVTMVFPEAH-CMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV 239 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~-g~-~Vtlv~~~~~-~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~ 239 (479)
++|+|||+|++|+|+|..+.+. |. +|+++.|.+. .++. .++++ .+.+ +.||+++++..+.+++ ++++.
T Consensus 667 K~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa-~~eEl----~~al-eeGVe~~~~~~p~~I~---~g~l~ 737 (1012)
T TIGR03315 667 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPA-SREEL----EEAL-EDGVDFKELLSPESFE---DGTLT 737 (1012)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCcccccc-CHHHH----HHHH-HcCCEEEeCCceEEEE---CCeEE
Confidence 9999999999999999998876 74 8999998763 3443 33333 3333 4799999998888886 12221
Q ss_pred EE--------------EeCCC--cEEeccEEEEecCCCCChhhhhc-cccc-ccCcEEEcCc-ccCCCCCeEEEeeeccc
Q 011700 240 AV--------------NLRDG--NRLPTDMVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGR-LQSSNSSVYAVGDVAAF 300 (479)
Q Consensus 240 ~v--------------~~~~g--~~i~~D~Vi~a~G~~p~~~l~~~-~~~~-~~g~i~Vd~~-l~t~~~~IyA~GD~~~~ 300 (479)
.. ...+| .++++|.||+|+|.+|++.+++. ++.. .+|+|.||++ ++|+.|+|||+|||+..
T Consensus 738 v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~G 817 (1012)
T TIGR03315 738 CEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRG 817 (1012)
T ss_pred EEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCC
Confidence 11 11123 36899999999999999998754 4555 5688999986 89999999999999865
Q ss_pred cccccCceeecccHHHHHHHHHHHHHHHcCCC
Q 011700 301 PLKLLGETRRLEHVDSARKSAKHAVAAIMEPD 332 (479)
Q Consensus 301 ~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~ 332 (479)
+ ..+..|+.+|+.||.+|++..
T Consensus 818 P----------~tVv~AIaqGr~AA~nIl~~~ 839 (1012)
T TIGR03315 818 P----------ATIVEAIADGRKAANAILSRE 839 (1012)
T ss_pred c----------cHHHHHHHHHHHHHHHHhccc
Confidence 4 357789999999999998654
No 66
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.96 E-value=1.8e-28 Score=252.00 Aligned_cols=284 Identities=23% Similarity=0.355 Sum_probs=197.0
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
.++|+|||+||+|+++|..|+++|++ |+++|+.+.. .+++. ..+|.+.. .........+++++
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~---V~i~e~~~~~--------gG~l~----~gip~~~~--~~~~~~~~~~~~~~ 203 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQ---VVVFDRHPEI--------GGLLT----FGIPSFKL--DKAVLSRRREIFTA 203 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCC--------Cceee----ecCccccC--CHHHHHHHHHHHHH
Confidence 47899999999999999999999886 9999988642 11111 01222211 01111233467788
Q ss_pred cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcc-cccccCCCCCCCCCeEEecCHHHH--HHHHHH----
Q 011700 84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARAL-KLEEFGLSGSDAENVCYLRDLADA--NRLVNV---- 156 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~-~~~~~g~~g~~~~~v~~~~~~~~~--~~l~~~---- 156 (479)
.|++++.++.+.. .+.+.+ ....||+||+|||+.+. .+++ +|.+.+++++..++... ..+...
T Consensus 204 ~Gv~~~~~~~v~~------~~~~~~-~~~~~D~vilAtGa~~~~~~~i---~g~~~~gV~~a~~~l~~~~~~~~~~~~~~ 273 (467)
T TIGR01318 204 MGIEFHLNCEVGR------DISLDD-LLEDYDAVFLGVGTYRSMRGGL---PGEDAPGVLQALPFLIANTRQLMGLPESP 273 (467)
T ss_pred CCCEEECCCEeCC------ccCHHH-HHhcCCEEEEEeCCCCCCcCCC---CCcCCCCcEEHHHHHHHHHHHhcCCCccc
Confidence 9999999876521 111111 12479999999999874 3454 77777787764432211 111000
Q ss_pred ---HhcCCCCCEEEECCChHHHHHHHHHhhCCC-eEEEEeecCcc-ccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEE
Q 011700 157 ---MKSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHC-MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFD 231 (479)
Q Consensus 157 ---l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~ 231 (479)
+....+++++|||+|++|+|+|..+.++|. +||++++.+.. ++. .+.++ +.+++.||++++++.+.++.
T Consensus 274 ~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~-~~~e~-----~~~~~~GV~~~~~~~~~~i~ 347 (467)
T TIGR01318 274 EEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPG-SRREV-----ANAREEGVEFLFNVQPVYIE 347 (467)
T ss_pred cccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCC-CHHHH-----HHHHhcCCEEEecCCcEEEE
Confidence 001246899999999999999999999985 79999987653 443 23322 34567899999999999997
Q ss_pred EcCCCcEEEEEeC---------CC-----------cEEeccEEEEecCCCCCh-hhhh-ccccc-ccCcEEEc----Ccc
Q 011700 232 VDSNGKVVAVNLR---------DG-----------NRLPTDMVVVGIGIRPNT-SLFE-GQLTL-EKGGIKVT----GRL 284 (479)
Q Consensus 232 ~~~~g~v~~v~~~---------~g-----------~~i~~D~Vi~a~G~~p~~-~l~~-~~~~~-~~g~i~Vd----~~l 284 (479)
.++++++..+++. +| +++++|.||+++|++|+. .+++ .++.. ++|+|.|| +++
T Consensus 348 ~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~ 427 (467)
T TIGR01318 348 CDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPY 427 (467)
T ss_pred ECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCc
Confidence 6556666555431 11 369999999999999985 3433 34555 56889999 689
Q ss_pred cCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700 285 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 285 ~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~ 330 (479)
+|+.|+|||+|||+..+ ..+..|+.+|+.||.+|..
T Consensus 428 ~T~~~gVfa~GD~~~~~----------~~~~~Ai~~G~~aA~~i~~ 463 (467)
T TIGR01318 428 QTTNPKIFAGGDAVRGA----------DLVVTAVAEGRQAAQGILD 463 (467)
T ss_pred cCCCCCEEEECCcCCCc----------cHHHHHHHHHHHHHHHHHH
Confidence 99999999999998754 3466899999999999863
No 67
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.96 E-value=1.8e-28 Score=261.13 Aligned_cols=282 Identities=23% Similarity=0.285 Sum_probs=191.0
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
.++|+||||||||++||..|++.|++ |+|+|+++... +.+.. .+|.+.. .........+.+.+
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~---Vtv~e~~~~~G--------G~l~~----gip~~~~--~~~~~~~~~~~l~~ 255 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHD---VTIFDANEQAG--------GMMRY----GIPRFRL--PESVIDADIAPLRA 255 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCC--------ceeee----cCCCCCC--CHHHHHHHHHHHHH
Confidence 47999999999999999999999987 99999986421 11110 1121110 00111122345677
Q ss_pred cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCc-ccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCC
Q 011700 84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARA-LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSG 162 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~-~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~ 162 (479)
.|++++.++.+ .++ +.+.+. ...||+||||||+.+ ..+++ ||.+.++++...++... ....-....+
T Consensus 256 ~Gv~i~~~~~v-~~d-----v~~~~~-~~~~DaVilAtGa~~~~~~~i---pG~~~~gv~~~~~~l~~--~~~~~~~~~g 323 (652)
T PRK12814 256 MGAEFRFNTVF-GRD-----ITLEEL-QKEFDAVLLAVGAQKASKMGI---PGEELPGVISGIDFLRN--VALGTALHPG 323 (652)
T ss_pred cCCEEEeCCcc-cCc-----cCHHHH-HhhcCEEEEEcCCCCCCCCCC---CCcCcCCcEeHHHHHHH--hhcCCcccCC
Confidence 89999988643 221 112111 235999999999985 34454 77666666643222111 1000011257
Q ss_pred CCEEEECCChHHHHHHHHHhhCCC-eEEEEeecCc-cccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcE--
Q 011700 163 GNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAH-CMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV-- 238 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~-~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v-- 238 (479)
++++|||+|++|+|+|..+.+.|. +||++.+.++ .++. .+.++ .+. .+.||+|++++.+.++..+ ++.+
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa-~~~ei----~~a-~~eGV~i~~~~~~~~i~~~-~~~~~v 396 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPA-NRAEI----EEA-LAEGVSLRELAAPVSIERS-EGGLEL 396 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHHHH----HHH-HHcCCcEEeccCcEEEEec-CCeEEE
Confidence 999999999999999999999986 6999998764 3443 23333 222 3579999999999999763 3332
Q ss_pred EEEEeC---------------CCc--EEeccEEEEecCCCCChhhhhc-cccc-ccCcEEEcC-cccCCCCCeEEEeeec
Q 011700 239 VAVNLR---------------DGN--RLPTDMVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTG-RLQSSNSSVYAVGDVA 298 (479)
Q Consensus 239 ~~v~~~---------------~g~--~i~~D~Vi~a~G~~p~~~l~~~-~~~~-~~g~i~Vd~-~l~t~~~~IyA~GD~~ 298 (479)
..+.+. +|+ ++++|.||+++|+.|++.+++. ++.. .+|+|.||+ +++|+.|+|||+|||+
T Consensus 397 ~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~ 476 (652)
T PRK12814 397 TAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCV 476 (652)
T ss_pred EEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcC
Confidence 222111 122 5999999999999999987754 4555 468899997 6899999999999998
Q ss_pred cccccccCceeecccHHHHHHHHHHHHHHHcCC
Q 011700 299 AFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP 331 (479)
Q Consensus 299 ~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~ 331 (479)
..+ .++..|+.+|+.||.+|...
T Consensus 477 ~g~----------~~v~~Ai~~G~~AA~~I~~~ 499 (652)
T PRK12814 477 TGA----------DIAINAVEQGKRAAHAIDLF 499 (652)
T ss_pred CCc----------hHHHHHHHHHHHHHHHHHHH
Confidence 754 34678999999999998643
No 68
>PRK13984 putative oxidoreductase; Provisional
Probab=99.96 E-value=3.5e-28 Score=258.48 Aligned_cols=280 Identities=23% Similarity=0.238 Sum_probs=190.8
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
.++|+|||+|+||+++|..|+++|++ |+|+|+++... +.+. ..+|.+.. .........+++++
T Consensus 283 ~~~v~IIGaG~aGl~aA~~L~~~G~~---v~vie~~~~~g--------G~~~----~~i~~~~~--~~~~~~~~~~~~~~ 345 (604)
T PRK13984 283 NKKVAIVGSGPAGLSAAYFLATMGYE---VTVYESLSKPG--------GVMR----YGIPSYRL--PDEALDKDIAFIEA 345 (604)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCC--------ceEe----ecCCcccC--CHHHHHHHHHHHHH
Confidence 57899999999999999999999987 99999886421 1110 01111100 00111223456788
Q ss_pred cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCC-cccccccCCCCCCCCCeEEecCHHHHHHHHHHHhc---
Q 011700 84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGAR-ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKS--- 159 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~-~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~--- 159 (479)
.|++++.++.|.. + +... .....||+||+|||+. |+.+++ +|.+..++++. ...+..+...+..
T Consensus 346 ~gv~~~~~~~v~~-~-----~~~~-~~~~~yD~vilAtGa~~~r~l~i---~G~~~~gv~~a--~~~l~~~~~~~~~~~~ 413 (604)
T PRK13984 346 LGVKIHLNTRVGK-D-----IPLE-ELREKHDAVFLSTGFTLGRSTRI---PGTDHPDVIQA--LPLLREIRDYLRGEGP 413 (604)
T ss_pred CCcEEECCCEeCC-c-----CCHH-HHHhcCCEEEEEcCcCCCccCCC---CCcCCcCeEeH--HHHHHHHHhhhccCCC
Confidence 9999999876631 1 1111 1235799999999987 566665 77666666642 2233333322211
Q ss_pred --CCCCCEEEECCChHHHHHHHHHhhCCC------eEEEEeec--CccccccCCHHHHHHHHHHHHhCCcEEEcCCceEE
Q 011700 160 --CSGGNAVVIGGGYIGMECAASLVINKI------NVTMVFPE--AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSS 229 (479)
Q Consensus 160 --~~~~~vvVIGgG~~g~E~A~~l~~~g~------~Vtlv~~~--~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~ 229 (479)
..+++++|||||++|+|+|..+.+++. +|+++... ...++. ... .+.+ +.+.||++++++.+.+
T Consensus 414 ~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~----~~~-e~~~-~~~~GV~i~~~~~~~~ 487 (604)
T PRK13984 414 KPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPA----DME-EIEE-GLEEGVVIYPGWGPME 487 (604)
T ss_pred cCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCC----CHH-HHHH-HHHcCCEEEeCCCCEE
Confidence 136899999999999999999998753 78886432 222222 211 1222 3457999999998988
Q ss_pred EEEcCCCcEEEEEeC--------C-----------CcEEeccEEEEecCCCCChhhhhc----ccccccCcEEEcCcccC
Q 011700 230 FDVDSNGKVVAVNLR--------D-----------GNRLPTDMVVVGIGIRPNTSLFEG----QLTLEKGGIKVTGRLQS 286 (479)
Q Consensus 230 i~~~~~g~v~~v~~~--------~-----------g~~i~~D~Vi~a~G~~p~~~l~~~----~~~~~~g~i~Vd~~l~t 286 (479)
+.. +++++..+++. + .+++++|.|++++|++|++.++.. .+..++|.|.||+++||
T Consensus 488 i~~-~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd~~~~T 566 (604)
T PRK13984 488 VVI-ENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRILTNEYGQT 566 (604)
T ss_pred EEc-cCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccccCCeEEeCCCCcc
Confidence 865 45666555442 1 236999999999999999987653 24346788999999999
Q ss_pred CCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700 287 SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 287 ~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~ 330 (479)
++|+|||+|||+..+. +..|+.+|+.||.+|..
T Consensus 567 s~~gVfAaGD~~~~~~-----------~v~Ai~~G~~AA~~I~~ 599 (604)
T PRK13984 567 SIPWLFAGGDIVHGPD-----------IIHGVADGYWAAEGIDM 599 (604)
T ss_pred CCCCEEEecCcCCchH-----------HHHHHHHHHHHHHHHHH
Confidence 9999999999997642 35689999999999853
No 69
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.96 E-value=7.8e-28 Score=257.35 Aligned_cols=284 Identities=22% Similarity=0.351 Sum_probs=194.5
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
.++|+|||+|||||+||..|++.|++ |+|+|+.+.. ++++.. .+|.+.. .........+++++
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~---V~V~E~~~~~--------GG~l~~----gip~~~l--~~~~~~~~~~~~~~ 389 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVA---VTVYDRHPEI--------GGLLTF----GIPAFKL--DKSLLARRREIFSA 389 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCC--------Cceeee----cCCCccC--CHHHHHHHHHHHHH
Confidence 57999999999999999999999987 9999987542 111111 1222211 01111223456778
Q ss_pred cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcc-cccccCCCCCCCCCeEEecCHH--HHHHHHHH----
Q 011700 84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARAL-KLEEFGLSGSDAENVCYLRDLA--DANRLVNV---- 156 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~-~~~~~g~~g~~~~~v~~~~~~~--~~~~l~~~---- 156 (479)
.|++++.++.+.. .+...+ ....||+|++|||+... .+++ +|.+..+++...++. ....+...
T Consensus 390 ~Gv~~~~~~~v~~------~i~~~~-~~~~~DavilAtGa~~~~~l~i---~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~ 459 (654)
T PRK12769 390 MGIEFELNCEVGK------DISLES-LLEDYDAVFVGVGTYRSMKAGL---PNEDAPGVYDALPFLIANTKQVMGLEELP 459 (654)
T ss_pred CCeEEECCCEeCC------cCCHHH-HHhcCCEEEEeCCCCCCCCCCC---CCCCCCCeEEhHHHHHHHHhhhccCcccc
Confidence 8999998875521 111111 12369999999998643 3444 777777776432211 00010000
Q ss_pred ---HhcCCCCCEEEECCChHHHHHHHHHhhCCC-eEEEEeecCcc-ccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEE
Q 011700 157 ---MKSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHC-MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFD 231 (479)
Q Consensus 157 ---l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~ 231 (479)
.....+++++|||+|++|+|+|..+.++|. +||++.+.+.. ++. .+.+ .+.+++.||++++++.+.++.
T Consensus 460 ~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~-~~~e-----~~~~~~~Gv~~~~~~~~~~i~ 533 (654)
T PRK12769 460 EEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPG-SKKE-----VKNAREEGANFEFNVQPVALE 533 (654)
T ss_pred ccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCC-CHHH-----HHHHHHcCCeEEeccCcEEEE
Confidence 001246899999999999999999989886 79999987653 332 2222 345778899999999999997
Q ss_pred EcCCCcEEEEEeC---------CC-----------cEEeccEEEEecCCCCCh-hhhh-ccccc-ccCcEEEcC----cc
Q 011700 232 VDSNGKVVAVNLR---------DG-----------NRLPTDMVVVGIGIRPNT-SLFE-GQLTL-EKGGIKVTG----RL 284 (479)
Q Consensus 232 ~~~~g~v~~v~~~---------~g-----------~~i~~D~Vi~a~G~~p~~-~l~~-~~~~~-~~g~i~Vd~----~l 284 (479)
.++++++..+++. +| .++++|.||+|+|+.|+. .+++ .++.+ .+|.|.||+ ++
T Consensus 534 ~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~ 613 (654)
T PRK12769 534 LNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRY 613 (654)
T ss_pred ECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCc
Confidence 6556777666541 22 259999999999999986 3443 34665 568899986 58
Q ss_pred cCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700 285 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 285 ~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~ 330 (479)
||+.|+|||+|||+..+ .++..|+.+|+.||.+|..
T Consensus 614 ~Ts~~gVfAaGD~~~g~----------~~vv~Ai~~Gr~AA~~I~~ 649 (654)
T PRK12769 614 QTSNPKIFAGGDAVRGA----------DLVVTAMAEGRHAAQGIID 649 (654)
T ss_pred ccCCCCEEEcCCcCCCC----------cHHHHHHHHHHHHHHHHHH
Confidence 99999999999998764 3567899999999999864
No 70
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.96 E-value=8e-28 Score=248.07 Aligned_cols=290 Identities=21% Similarity=0.298 Sum_probs=193.3
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
.++|+|||+|++|++||..|+++|++ |+|+|+.+... +++. ..+|.+.. .........+++++
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~---V~v~e~~~~~g--------G~l~----~gip~~~~--~~~~~~~~~~~~~~ 205 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHT---VTVFEREDRCG--------GLLM----YGIPNMKL--DKAIVDRRIDLLSA 205 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCe---EEEEecCCCCC--------ceee----ccCCCccC--CHHHHHHHHHHHHh
Confidence 37999999999999999999999886 99999986421 1110 01121110 00111223466788
Q ss_pred cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCC-cccccccCCCCCCCCCeEEecCH-HHHHHHHH--HH--
Q 011700 84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGAR-ALKLEEFGLSGSDAENVCYLRDL-ADANRLVN--VM-- 157 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~-~~~~~~~g~~g~~~~~v~~~~~~-~~~~~l~~--~l-- 157 (479)
.|++++.++.+. .+... +.....||+|++|||+. |+.+++ +|.+.+++++..++ .+...... ..
T Consensus 206 ~Gv~~~~~~~v~-~~~~~------~~~~~~~d~VilAtGa~~~~~l~i---~G~~~~gV~~~~~~l~~~~~~~~~~~~~~ 275 (485)
T TIGR01317 206 EGIDFVTNTEIG-VDISA------DELKEQFDAVVLAGGATKPRDLPI---PGRELKGIHYAMEFLPSATKALLGKDFKD 275 (485)
T ss_pred CCCEEECCCEeC-CccCH------HHHHhhCCEEEEccCCCCCCcCCC---CCcCCCCcEeHHHHHHHHhhhhccccccc
Confidence 999999987653 11111 11235799999999998 777776 77777788765432 22211110 00
Q ss_pred ---hcCCCCCEEEECCChHHHHHHHHHhhCC-CeEEEEeecCccccccCC----H------HHHHHHHHHHHhCCcEE-E
Q 011700 158 ---KSCSGGNAVVIGGGYIGMECAASLVINK-INVTMVFPEAHCMARLFT----P------KIASYYEEYYKSKGVKF-V 222 (479)
Q Consensus 158 ---~~~~~~~vvVIGgG~~g~E~A~~l~~~g-~~Vtlv~~~~~~l~~~~~----~------~~~~~~~~~l~~~GV~i-~ 222 (479)
....+++|+|||+|++|+|+|..+.+++ .+|+++++.+..+..... + ++....++..+..||++ +
T Consensus 276 ~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~ 355 (485)
T TIGR01317 276 IIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPRE 355 (485)
T ss_pred cccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceE
Confidence 0125799999999999999987777776 589999887765432110 0 12223344444467654 4
Q ss_pred cCCceEEEEEcCCCcEEEEEe--------CCC-----------cEEeccEEEEecCCC-CChhhhhc-cccc-ccCcEE-
Q 011700 223 KGTVLSSFDVDSNGKVVAVNL--------RDG-----------NRLPTDMVVVGIGIR-PNTSLFEG-QLTL-EKGGIK- 279 (479)
Q Consensus 223 ~~~~v~~i~~~~~g~v~~v~~--------~~g-----------~~i~~D~Vi~a~G~~-p~~~l~~~-~~~~-~~g~i~- 279 (479)
+++.+.+|..++++++..+.+ .+| .++++|.|++++|.. |++.+++. ++.. .+|.+.
T Consensus 356 ~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~ 435 (485)
T TIGR01317 356 YSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISA 435 (485)
T ss_pred EecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEe
Confidence 677788887644466666553 133 269999999999986 88877654 4554 467775
Q ss_pred EcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700 280 VTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 280 Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~ 330 (479)
+|++++|+.|+|||+|||+..+ ..+..|+.+|+.||.+|..
T Consensus 436 ~~~~~~Ts~~gVfAaGD~~~g~----------~~~~~Av~~G~~AA~~i~~ 476 (485)
T TIGR01317 436 GYDDYSTSIPGVFAAGDCRRGQ----------SLIVWAINEGRKAAAAVDR 476 (485)
T ss_pred cCCCceECCCCEEEeeccCCCc----------HHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999998754 3466799999999999854
No 71
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.4e-28 Score=213.18 Aligned_cols=281 Identities=23% Similarity=0.265 Sum_probs=198.3
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccc-cCCcccCCCHhHH
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTC-VGANEERLTPKWY 81 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 81 (479)
.+.+|+|||.|||+.+||++++|.-++. +|+|--.. +.......+.......++|+|+.. .|.+..+.+.++.
T Consensus 7 h~e~v~IiGSGPAa~tAAiYaaraelkP---llfEG~~~---~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs 80 (322)
T KOG0404|consen 7 HNENVVIIGSGPAAHTAAIYAARAELKP---LLFEGMMA---NGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQS 80 (322)
T ss_pred eeeeEEEEccCchHHHHHHHHhhcccCc---eEEeeeec---cCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHH
Confidence 3458999999999999999999987773 77765421 111112233334456778888753 3444445566666
Q ss_pred HHcCcEEEeCceEEEEECCCcEEEe-CCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcC
Q 011700 82 NEHGIELVLGTRVKSADVRRKTLVT-ATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSC 160 (479)
Q Consensus 82 ~~~gv~~~~~~~v~~i~~~~~~v~~-~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~ 160 (479)
.++|.+++.. .|..++...+-..+ .+.+.+.+|.+|+|||+..+.+.. ||.. +.-|+.+.+....-+.....-+
T Consensus 81 ~r~Gt~i~tE-tVskv~~sskpF~l~td~~~v~~~avI~atGAsAkRl~~---pg~g-e~~fWqrGiSaCAVCDGaapif 155 (322)
T KOG0404|consen 81 ERFGTEIITE-TVSKVDLSSKPFKLWTDARPVTADAVILATGASAKRLHL---PGEG-EGEFWQRGISACAVCDGAAPIF 155 (322)
T ss_pred Hhhcceeeee-ehhhccccCCCeEEEecCCceeeeeEEEecccceeeeec---CCCC-cchHHhcccchhhcccCcchhh
Confidence 7789999986 78888877664333 356789999999999999888776 4431 1112222222111111111112
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 240 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~ 240 (479)
+.|.++|||||.+++|-|.+|.+.+.+|++++|++++.. ...|.+ +..+..+|+++.++.+.+...+ .+.+..
T Consensus 156 rnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRA---s~~Mq~---ra~~npnI~v~~nt~~~ea~gd-~~~l~~ 228 (322)
T KOG0404|consen 156 RNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRA---SKIMQQ---RAEKNPNIEVLYNTVAVEALGD-GKLLNG 228 (322)
T ss_pred cCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhH---HHHHHH---HHhcCCCeEEEechhhhhhccC-cccccc
Confidence 578899999999999999999999999999999988654 233332 3345678999999987777652 222222
Q ss_pred -----EEeCCCcEEeccEEEEecCCCCChhhhhccccc-ccCcEEEc-CcccCCCCCeEEEeeecccc
Q 011700 241 -----VNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVT-GRLQSSNSSVYAVGDVAAFP 301 (479)
Q Consensus 241 -----v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd-~~l~t~~~~IyA~GD~~~~~ 301 (479)
+.+.+-+.++.+-+++++|..|++.+++.++++ ++|+|++- ..-.||+|++||+||+....
T Consensus 229 l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~gqve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~k 296 (322)
T KOG0404|consen 229 LRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKGQVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKK 296 (322)
T ss_pred eEEEecccCcccccccceeEEEecCCchhhHhcCceeeccCceEEeccCcccccccceeeccccchHH
Confidence 333334579999999999999999999998888 68898887 56788999999999998754
No 72
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.96 E-value=9.1e-27 Score=258.38 Aligned_cols=278 Identities=19% Similarity=0.172 Sum_probs=192.4
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
.+||+|||||||||+||.+|++.|++ |+|+|+++.... .+.... ..+++.. .........+.+..
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~---V~liD~~~~~GG-------~~~~~~--~~~~g~~---~~~~~~~~~~~l~~ 227 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGAR---VILVDEQPEAGG-------SLLSEA--ETIDGKP---AADWAAATVAELTA 227 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCCCCC-------eeeccc--cccCCcc---HHHHHHHHHHHHhc
Confidence 57999999999999999999999987 999999864210 011000 0111100 00000112233444
Q ss_pred c-CcEEEeCceEEEEECCCcEEEeC----------C----C--cEEEeceEEeecCCCcccccccCCCCCCCCCeEEecC
Q 011700 84 H-GIELVLGTRVKSADVRRKTLVTA----------T----G--ETISYKILIIATGARALKLEEFGLSGSDAENVCYLRD 146 (479)
Q Consensus 84 ~-gv~~~~~~~v~~i~~~~~~v~~~----------~----g--~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~ 146 (479)
. +++++.++.|..++..+...... + + .++.||+||||||+.++.|++ +|.+.+++++...
T Consensus 228 ~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pi---pG~~~pgV~~~~~ 304 (985)
T TIGR01372 228 MPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVF---ANNDRPGVMLAGA 304 (985)
T ss_pred CCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCC---CCCCCCCcEEchH
Confidence 4 59999998998886543211110 1 1 268999999999999988887 7777788887654
Q ss_pred HHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCC-eEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCC
Q 011700 147 LADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 225 (479)
Q Consensus 147 ~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~ 225 (479)
.... .......++++++|||+|++++|+|..|.+.|. .|+++++.+.+ ...+.+.+++.||++++++
T Consensus 305 ~~~~---l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~---------~~~l~~~L~~~GV~i~~~~ 372 (985)
T TIGR01372 305 ARTY---LNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV---------SPEARAEARELGIEVLTGH 372 (985)
T ss_pred HHHH---HHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch---------hHHHHHHHHHcCCEEEcCC
Confidence 4322 111111257999999999999999999999995 57888766433 2235567889999999999
Q ss_pred ceEEEEEcCCCcEEEEEeC----CCcEEeccEEEEecCCCCChhhhhc-ccccccCcEEEcCcc-----cCCCCCeEEEe
Q 011700 226 VLSSFDVDSNGKVVAVNLR----DGNRLPTDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRL-----QSSNSSVYAVG 295 (479)
Q Consensus 226 ~v~~i~~~~~g~v~~v~~~----~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~~~g~i~Vd~~l-----~t~~~~IyA~G 295 (479)
.+.+++. ++.+..|++. +++++++|.|+++.|++||+++... +.. +..|+.. .|+.|+||++|
T Consensus 373 ~v~~i~g--~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~-----~~~~~~~~~~~~~t~v~gVyaaG 445 (985)
T TIGR01372 373 VVAATEG--GKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGK-----LAWDAAIAAFLPGDAVQGCILAG 445 (985)
T ss_pred eEEEEec--CCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCC-----eeeccccCceecCCCCCCeEEee
Confidence 9999975 3444455543 4568999999999999999998753 221 2222221 37899999999
Q ss_pred eeccccccccCceeecccHHHHHHHHHHHHHHHc
Q 011700 296 DVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 329 (479)
Q Consensus 296 D~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 329 (479)
||++.. .+..|..+|+.|+..++
T Consensus 446 D~~g~~-----------~~~~A~~eG~~Aa~~i~ 468 (985)
T TIGR01372 446 AANGLF-----------GLAAALADGAAAGAAAA 468 (985)
T ss_pred ccCCcc-----------CHHHHHHHHHHHHHHHH
Confidence 999753 35678999999998875
No 73
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.95 E-value=5.7e-27 Score=238.23 Aligned_cols=291 Identities=22% Similarity=0.302 Sum_probs=189.1
Q ss_pred cCeEEEECCchHHHHHHHHHHH--cCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTK--RGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWY 81 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~--~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (479)
.++|+||||||||++||..|++ .|++ |+|+|+.+. +|. ++........+.. ......+..++
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~---Vtv~E~~p~-pgG-------lvr~gvaP~~~~~-----k~v~~~~~~~~ 89 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGAR---VDIIERLPT-PFG-------LVRSGVAPDHPET-----KNVTNQFSRVA 89 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCe---EEEEecCCC-Ccc-------eEeeccCCCcchh-----HHHHHHHHHHH
Confidence 4789999999999999999987 4555 999999974 332 2211110111100 00112234456
Q ss_pred HHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCc-ccccccCCCCCCCCCeEEecCHHH-------HHHH
Q 011700 82 NEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARA-LKLEEFGLSGSDAENVCYLRDLAD-------ANRL 153 (479)
Q Consensus 82 ~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~-~~~~~~g~~g~~~~~v~~~~~~~~-------~~~l 153 (479)
...+++++.+..+ ++.+.+++- ...||+||||||+.+ +.+++ ||.+.++++...++.. ...+
T Consensus 90 ~~~~v~~~~nv~v------g~dvtl~~L-~~~yDaVIlAtGa~~~~~l~I---pG~d~~gV~~a~~fl~~~ng~~d~~~~ 159 (491)
T PLN02852 90 TDDRVSFFGNVTL------GRDVSLSEL-RDLYHVVVLAYGAESDRRLGI---PGEDLPGVLSAREFVWWYNGHPDCVHL 159 (491)
T ss_pred HHCCeEEEcCEEE------CccccHHHH-hhhCCEEEEecCCCCCCCCCC---CCCCCCCeEEHHHHHHHhhcchhhhhh
Confidence 6778998876443 222333332 247999999999985 55555 7877788887655421 1111
Q ss_pred HHHHhcCCCCCEEEECCChHHHHHHHHHhhC--------------------C-CeEEEEeecCccccccCCHHHH-----
Q 011700 154 VNVMKSCSGGNAVVIGGGYIGMECAASLVIN--------------------K-INVTMVFPEAHCMARLFTPKIA----- 207 (479)
Q Consensus 154 ~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~--------------------g-~~Vtlv~~~~~~l~~~~~~~~~----- 207 (479)
...+ ..+++++|||+|++|+|+|..|.+. + .+|+++.|+...-..+-..|+.
T Consensus 160 ~~~~--~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l 237 (491)
T PLN02852 160 PPDL--KSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGL 237 (491)
T ss_pred hhcc--cCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhcc
Confidence 0001 1478999999999999999998775 5 4699998876321111111111
Q ss_pred --------------------------------HHHHHHHHh---------CCcEEEcCCceEEEEEc--CCCcEEEEEeC
Q 011700 208 --------------------------------SYYEEYYKS---------KGVKFVKGTVLSSFDVD--SNGKVVAVNLR 244 (479)
Q Consensus 208 --------------------------------~~~~~~l~~---------~GV~i~~~~~v~~i~~~--~~g~v~~v~~~ 244 (479)
+.+.+...+ ++|.|++...+.+|..+ +++++..+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~ 317 (491)
T PLN02852 238 KNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLE 317 (491)
T ss_pred CCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEE
Confidence 122222222 57999999999999742 23567666653
Q ss_pred -----------------CC--cEEeccEEEEecCCC--CChhh-hhc--ccc-cccCcEEEcCcccCCCCCeEEEeeecc
Q 011700 245 -----------------DG--NRLPTDMVVVGIGIR--PNTSL-FEG--QLT-LEKGGIKVTGRLQSSNSSVYAVGDVAA 299 (479)
Q Consensus 245 -----------------~g--~~i~~D~Vi~a~G~~--p~~~l-~~~--~~~-~~~g~i~Vd~~l~t~~~~IyA~GD~~~ 299 (479)
+| +++++|.||.++|++ |...+ +.. ++. ..+|.|.+|+.++|+.|+|||+|||..
T Consensus 318 ~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T~ipGvyAaGDi~~ 397 (491)
T PLN02852 318 RTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGADTEPGLYVVGWLKR 397 (491)
T ss_pred EeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCccCCCCEEEeeeEec
Confidence 12 258999999999998 55553 222 233 357899999888999999999999998
Q ss_pred ccccccCceeecccHHHHHHHHHHHHHHHcCC
Q 011700 300 FPLKLLGETRRLEHVDSARKSAKHAVAAIMEP 331 (479)
Q Consensus 300 ~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~ 331 (479)
.|. ..+..++.+|+.++++|...
T Consensus 398 Gp~---------gvI~t~~~dA~~ta~~i~~d 420 (491)
T PLN02852 398 GPT---------GIIGTNLTCAEETVASIAED 420 (491)
T ss_pred CCC---------CeeeecHhhHHHHHHHHHHH
Confidence 765 24556777888888888643
No 74
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.4e-28 Score=226.05 Aligned_cols=271 Identities=23% Similarity=0.313 Sum_probs=198.4
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
.|||+||||||||-+||.+.+|.|.+.+-+ -|+- . ...+..-...++.......|......+++..++
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~--aerf-----G-----GQvldT~~IENfIsv~~teGpkl~~ale~Hv~~ 278 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLV--AERF-----G-----GQVLDTMGIENFISVPETEGPKLAAALEAHVKQ 278 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhh--hhhh-----C-----CeeccccchhheeccccccchHHHHHHHHHHhh
Confidence 589999999999999999999999874211 1111 1 001111112222222222233333445666778
Q ss_pred cCcEEEeCceEEEEECC-----CcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHh
Q 011700 84 HGIELVLGTRVKSADVR-----RKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMK 158 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~-----~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~ 158 (479)
+.|+++...++..+.+. ...|.+.+|..+.++.+|||||++.+...+||-......+|.++.+++...
T Consensus 279 Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGPL------- 351 (520)
T COG3634 279 YDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPL------- 351 (520)
T ss_pred cCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCcc-------
Confidence 88998877777777663 356888999999999999999999988777433333356788887765432
Q ss_pred cCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCc
Q 011700 159 SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGK 237 (479)
Q Consensus 159 ~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~ 237 (479)
+.+|+|.|||||++|+|.|..|+..-.+||+++-.+.+- .-+.+++.++. .+++++++..-++|.. +..+
T Consensus 352 -F~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLk-------AD~VLq~kl~sl~Nv~ii~na~Ttei~G-dg~k 422 (520)
T COG3634 352 -FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELK-------ADAVLQDKLRSLPNVTIITNAQTTEVKG-DGDK 422 (520)
T ss_pred -cCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhh-------hHHHHHHHHhcCCCcEEEecceeeEEec-CCce
Confidence 268999999999999999999999989999987443321 12345555554 5799999999999986 3356
Q ss_pred EEEEEeCC---Cc--EEeccEEEEecCCCCChhhhhccccc-ccCcEEEcCcccCCCCCeEEEeeeccccc
Q 011700 238 VVAVNLRD---GN--RLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPL 302 (479)
Q Consensus 238 v~~v~~~~---g~--~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~ 302 (479)
++.+...| |+ .++-+-|++-+|..||+++++..+.. ..|-|.||.+..||+|+|||+|||+..+.
T Consensus 423 V~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~vel~~rGEIivD~~g~TsvpGvFAAGD~T~~~y 493 (520)
T COG3634 423 VTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGAVELNRRGEIIVDARGETNVPGVFAAGDCTTVPY 493 (520)
T ss_pred ecceEEEeccCCceeEEEeeeeEEEEecccChhHhhchhhcCcCccEEEecCCCcCCCceeecCcccCCcc
Confidence 66666644 32 46778899999999999999988877 67889999999999999999999998765
No 75
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.95 E-value=1.4e-26 Score=246.56 Aligned_cols=284 Identities=21% Similarity=0.349 Sum_probs=193.8
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
.++|+|||+||+||++|..|++.|++ |+++|+.+.. .+++. ..+|.+... ........+++++
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~---Vtv~e~~~~~--------GG~l~----~gip~~~l~--~~~~~~~~~~~~~ 372 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQ---VDVFDRHPEI--------GGMLT----FGIPPFKLD--KTVLSQRREIFTA 372 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCc---EEEEeCCCCC--------CCeee----ccCCcccCC--HHHHHHHHHHHHH
Confidence 57999999999999999999999987 9999998642 11111 112222110 1111223466788
Q ss_pred cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcc-cccccCCCCCCCCCeEEecCHHHH--HHHHHH----
Q 011700 84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARAL-KLEEFGLSGSDAENVCYLRDLADA--NRLVNV---- 156 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~-~~~~~g~~g~~~~~v~~~~~~~~~--~~l~~~---- 156 (479)
.|++++.++.+.. .+.+.+ ....||+|++|||+.+. .+++ +|.+..++++..++... ..+...
T Consensus 373 ~Gv~~~~~~~v~~------~~~~~~-l~~~~DaV~latGa~~~~~~~i---~g~~~~gv~~a~~~l~~~~~~~~~~~~~~ 442 (639)
T PRK12809 373 MGIDFHLNCEIGR------DITFSD-LTSEYDAVFIGVGTYGMMRADL---PHEDAPGVIQALPFLTAHTRQLMGLPESE 442 (639)
T ss_pred CCeEEEcCCccCC------cCCHHH-HHhcCCEEEEeCCCCCCCCCCC---CCCccCCcEeHHHHHHHHHHhhccCcccc
Confidence 9999999875521 111211 23469999999998743 3444 77776777653221110 001000
Q ss_pred ---HhcCCCCCEEEECCChHHHHHHHHHhhCCC-eEEEEeecCcc-ccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEE
Q 011700 157 ---MKSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHC-MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFD 231 (479)
Q Consensus 157 ---l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~ 231 (479)
+....+++++|||+|++++++|..+.++|. +||++.+++.. ++. .+.++. .+++.||+|++++.+.+|.
T Consensus 443 ~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~-~~~e~~-----~a~~eGv~~~~~~~~~~i~ 516 (639)
T PRK12809 443 EYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPG-SRKEVV-----NAREEGVEFQFNVQPQYIA 516 (639)
T ss_pred ccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHHHHH-----HHHHcCCeEEeccCCEEEE
Confidence 011246899999999999999999888884 89999987654 442 222222 3467899999999999998
Q ss_pred EcCCCcEEEEEe---C------CC-----------cEEeccEEEEecCCCCCh-hhhhc-cccc-ccCcEEEcC----cc
Q 011700 232 VDSNGKVVAVNL---R------DG-----------NRLPTDMVVVGIGIRPNT-SLFEG-QLTL-EKGGIKVTG----RL 284 (479)
Q Consensus 232 ~~~~g~v~~v~~---~------~g-----------~~i~~D~Vi~a~G~~p~~-~l~~~-~~~~-~~g~i~Vd~----~l 284 (479)
.++++++..+.+ . +| .++++|.||+|+|++|+. .+++. ++.. .+|.|.||+ ++
T Consensus 517 ~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~ 596 (639)
T PRK12809 517 CDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPT 596 (639)
T ss_pred ECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCc
Confidence 655676665532 1 12 368999999999999975 34443 4555 467899985 48
Q ss_pred cCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700 285 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 285 ~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~ 330 (479)
||+.|+|||+|||...+ .++..|+.+|+.||.+|..
T Consensus 597 ~Ts~~gVfA~GD~~~g~----------~~vv~Ai~~Gr~AA~~i~~ 632 (639)
T PRK12809 597 QTHLKKVFAGGDAVHGA----------DLVVTAMAAGRQAARDMLT 632 (639)
T ss_pred ccCCCCEEEcCCCCCCc----------hHHHHHHHHHHHHHHHHHH
Confidence 99999999999998764 3567899999999999864
No 76
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.94 E-value=3.7e-25 Score=233.22 Aligned_cols=281 Identities=24% Similarity=0.327 Sum_probs=188.0
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+|+|||+||+||++|..|+++|++ |+++|+.+... +++. ..+|.+... ........+.+.+
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~---V~v~e~~~~~G--------G~l~----~gip~~~~~--~~~~~~~l~~~~~ 199 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHA---VTIFEAGPKLG--------GMMR----YGIPAYRLP--REVLDAEIQRILD 199 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCC--------Ceee----ecCCCccCC--HHHHHHHHHHHHH
Confidence 46899999999999999999999986 99999886421 1111 112222110 0011122345667
Q ss_pred cCcEEEeCceE-EEEECCCcEEEeCCCcEEEeceEEeecCCCcc-cccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCC
Q 011700 84 HGIELVLGTRV-KSADVRRKTLVTATGETISYKILIIATGARAL-KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCS 161 (479)
Q Consensus 84 ~gv~~~~~~~v-~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~-~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~ 161 (479)
.|+++..++.+ ..+..+. ....||++|+|||+.+. .+. +++.+..+++..-.+. ...........
T Consensus 200 ~Gv~~~~~~~~~~~~~~~~--------~~~~~D~Vi~AtG~~~~~~~~---i~g~~~~gv~~~~~~l--~~~~~~~~~~~ 266 (564)
T PRK12771 200 LGVEVRLGVRVGEDITLEQ--------LEGEFDAVFVAIGAQLGKRLP---IPGEDAAGVLDAVDFL--RAVGEGEPPFL 266 (564)
T ss_pred CCCEEEeCCEECCcCCHHH--------HHhhCCEEEEeeCCCCCCcCC---CCCCccCCcEEHHHHH--HHhhccCCcCC
Confidence 89998888654 2211110 11258999999998753 333 3665555554332221 11110001224
Q ss_pred CCCEEEECCChHHHHHHHHHhhCC-CeEEEEeecCcc-ccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcE-
Q 011700 162 GGNAVVIGGGYIGMECAASLVINK-INVTMVFPEAHC-MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV- 238 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g-~~Vtlv~~~~~~-l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v- 238 (479)
+++++|+|+|..+++++..+.+++ .+|+++.+.+.. ++. ...++ +.+.+.||+++++..+.+++.++++.+
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~-~~~~~-----~~a~~~GVki~~~~~~~~i~~~~~~~~~ 340 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPA-HDEEI-----EEALREGVEINWLRTPVEIEGDENGATG 340 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCC-CHHHH-----HHHHHcCCEEEecCCcEEEEcCCCCEEE
Confidence 789999999999999999998888 679999887542 222 22222 224567999999999999986444432
Q ss_pred ---EEEEe----CCC---------cEEeccEEEEecCCCCChhhhhc--ccccccCcEEEcC-cccCCCCCeEEEeeecc
Q 011700 239 ---VAVNL----RDG---------NRLPTDMVVVGIGIRPNTSLFEG--QLTLEKGGIKVTG-RLQSSNSSVYAVGDVAA 299 (479)
Q Consensus 239 ---~~v~~----~~g---------~~i~~D~Vi~a~G~~p~~~l~~~--~~~~~~g~i~Vd~-~l~t~~~~IyA~GD~~~ 299 (479)
..+.. .+| .++++|.||+|+|..|++.+++. ++..++|.|.||+ +++|+.|+|||+|||+.
T Consensus 341 v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~~ 420 (564)
T PRK12771 341 LRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVP 420 (564)
T ss_pred EEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhccCcccCCCCEEeCCCCccCCCCCEEeccCcCC
Confidence 12222 122 37999999999999999887763 4444678899998 78999999999999987
Q ss_pred ccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700 300 FPLKLLGETRRLEHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 300 ~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~ 330 (479)
.+ .++..|+.+|+.||.+|..
T Consensus 421 g~----------~~v~~Av~~G~~aA~~i~~ 441 (564)
T PRK12771 421 GP----------RTVTTAIGHGKKAARNIDA 441 (564)
T ss_pred Cc----------hHHHHHHHHHHHHHHHHHH
Confidence 54 4577899999999999853
No 77
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.92 E-value=8.7e-24 Score=215.74 Aligned_cols=289 Identities=13% Similarity=0.125 Sum_probs=185.2
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCC-Ccc---------------cc---ccc--CCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YER-PAL---------------SK---GYL--LPE 57 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~~-~~l---------------~~---~~~--~~~ 57 (479)
|++.++|+|||||+|||+||++|++.|++ ++++|+++... |.. +.. +. .+. .+.
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G~~---v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~ 83 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRREGHT---VVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPR 83 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhcCCe---EEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCH
Confidence 34568999999999999999999999986 99999987531 110 000 00 000 000
Q ss_pred CCCCCCCcccc--------------cCCcccCCCHhHHHHcCcE--EEeCceEEEEECCCc--EEEeCCC----cEEEec
Q 011700 58 APARLPSFHTC--------------VGANEERLTPKWYNEHGIE--LVLGTRVKSADVRRK--TLVTATG----ETISYK 115 (479)
Q Consensus 58 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~gv~--~~~~~~v~~i~~~~~--~v~~~~g----~~~~~d 115 (479)
....++.|... ...+...++..+.++++++ ++.+++|+++++.++ .|.+.++ .+..||
T Consensus 84 ~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d 163 (461)
T PLN02172 84 ECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFD 163 (461)
T ss_pred hhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcC
Confidence 00111111110 1111222344555567877 788999999987654 3444322 246799
Q ss_pred eEEeecC--CCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEee
Q 011700 116 ILIIATG--ARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFP 193 (479)
Q Consensus 116 ~lviAtG--~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~ 193 (479)
+||+||| +.|+.|+++|+..... ..++.+++.+.+. +.+|+|+|||+|.+|+|+|..|++.+.+|+++.|
T Consensus 164 ~VIvAtG~~~~P~~P~ipG~~~f~G-~~iHs~~yr~~~~-------~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r 235 (461)
T PLN02172 164 AVVVCNGHYTEPNVAHIPGIKSWPG-KQIHSHNYRVPDP-------FKNEVVVVIGNFASGADISRDIAKVAKEVHIASR 235 (461)
T ss_pred EEEEeccCCCCCcCCCCCCcccCCc-eEEEecccCCccc-------cCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEe
Confidence 9999999 6788888744432221 2334444433322 2689999999999999999999999999999998
Q ss_pred cCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhhccccc
Q 011700 194 EAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL 273 (479)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~~~~~ 273 (479)
...+.. .+.+.....++..+..|..+.. ++ .|.+.||+.+++|.||+|||++|+.++++.
T Consensus 236 ~~~~~~-----------~~~~~~~~~~v~~~~~I~~~~~--~g---~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~---- 295 (461)
T PLN02172 236 ASESDT-----------YEKLPVPQNNLWMHSEIDTAHE--DG---SIVFKNGKVVYADTIVHCTGYKYHFPFLET---- 295 (461)
T ss_pred eccccc-----------cccCcCCCCceEECCcccceec--CC---eEEECCCCCccCCEEEECCcCCccccccCc----
Confidence 754211 0011112234455666666543 34 478899999999999999999999998763
Q ss_pred ccCcEEEcCc------ccC---C-CCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCC
Q 011700 274 EKGGIKVTGR------LQS---S-NSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD 332 (479)
Q Consensus 274 ~~g~i~Vd~~------l~t---~-~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~ 332 (479)
.+.+.+|++ .++ . .|+++.+|=.... .....+..|++.+|+.+.|..
T Consensus 296 -~~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~-----------~~f~~~E~Qa~~~a~v~sG~~ 352 (461)
T PLN02172 296 -NGYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMG-----------IQFVMFEIQSKWVAAVLSGRV 352 (461)
T ss_pred -ccceeeCCCcchhhHHhhcCCCCCCcEEEEeccccc-----------cCchhHHHHHHHHHHHHcCCC
Confidence 233444432 121 2 4899999965322 234567889999999888764
No 78
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.88 E-value=5.8e-22 Score=182.06 Aligned_cols=298 Identities=20% Similarity=0.287 Sum_probs=203.6
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcc---cccccCCCCCCCCCCcccccCCcccCCCHh
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPAL---SKGYLLPEAPARLPSFHTCVGANEERLTPK 79 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (479)
++++|+|||||.+|+..|..+.+. +..++|.++|+.+.+.|+ |.. ..++...+...+ . ..
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rk-l~~g~vgIvep~e~HyYQ-PgfTLvGgGl~~l~~srr--------------~-~a 100 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRK-LGSGSVGIVEPAEDHYYQ-PGFTLVGGGLKSLDSSRR--------------K-QA 100 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhh-cCCCceEEecchhhcccC-cceEEeccchhhhhhccC--------------c-cc
Confidence 468999999999999999999874 556789999999987765 321 122211111000 0 00
Q ss_pred HHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCC-CCCCCCCeEEecCHHHHHHHHHHHh
Q 011700 80 WYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGL-SGSDAENVCYLRDLADANRLVNVMK 158 (479)
Q Consensus 80 ~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~-~g~~~~~v~~~~~~~~~~~l~~~l~ 158 (479)
-+--.+...+. ..|.+.++++++|.+.+|++++||++|||+|..-..-.+.|+ ++.+.++|.+..+..-++.....+.
T Consensus 101 ~liP~~a~wi~-ekv~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~ 179 (446)
T KOG3851|consen 101 SLIPKGATWIK-EKVKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELM 179 (446)
T ss_pred ccccCCcHHHH-HHHHhcCCCcCeEEccCCcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHH
Confidence 01112333333 367788899999999999999999999999988666666554 3456788988888888888888777
Q ss_pred cCCCCCEEE---------ECCChHHHHHHH-HHhhCCC--eEEEEeecCccccccCC-HHHHHHHHHHHHhCCcEEEcCC
Q 011700 159 SCSGGNAVV---------IGGGYIGMECAA-SLVINKI--NVTMVFPEAHCMARLFT-PKIASYYEEYYKSKGVKFVKGT 225 (479)
Q Consensus 159 ~~~~~~vvV---------IGgG~~g~E~A~-~l~~~g~--~Vtlv~~~~~~l~~~~~-~~~~~~~~~~l~~~GV~i~~~~ 225 (479)
++...+.+. -|+..-.+-++. .+++.|. ++.++... -|+..|. ...++.+++..+++.|++....
T Consensus 180 ~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~T--sl~~iFgVk~Y~~AL~k~~~~rni~vn~kr 257 (446)
T KOG3851|consen 180 NFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNT--SLPTIFGVKHYADALEKVIQERNITVNYKR 257 (446)
T ss_pred hccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEec--CccceecHHHHHHHHHHHHHhcceEeeecc
Confidence 654444332 344444444443 3555654 34554433 2333344 5678889999999999999998
Q ss_pred ceEEEEEcCCCcEEEEEeCC-C--cEEeccEEEEecCCCCChhhhhcccccccCcEEEcC-cccC-CCCCeEEEeeeccc
Q 011700 226 VLSSFDVDSNGKVVAVNLRD-G--NRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTG-RLQS-SNSSVYAVGDVAAF 300 (479)
Q Consensus 226 ~v~~i~~~~~g~v~~v~~~~-g--~~i~~D~Vi~a~G~~p~~~l~~~~~~~~~g~i~Vd~-~l~t-~~~~IyA~GD~~~~ 300 (479)
.+.++..+ +.+.+--.+.+ | ++++++++-+....++...+.++.+....|++.||. .+|. .+||||++|||.+.
T Consensus 258 nLiEV~~~-~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~pe~l~~s~~adktGfvdVD~~TlQs~kypNVFgiGDc~n~ 336 (446)
T KOG3851|consen 258 NLIEVRTN-DRKAVFENLDKPGVTEEIEYSLLHVTPPMSTPEVLANSDLADKTGFVDVDQSTLQSKKYPNVFGIGDCMNL 336 (446)
T ss_pred ceEEEecc-chhhHHHhcCCCCceeEEeeeeeeccCCCCChhhhhcCcccCcccceecChhhhccccCCCceeeccccCC
Confidence 88888763 32211111222 4 478999999999998888787777777889999994 6776 89999999999998
Q ss_pred cccccCceeecccHHHHHHHHHHHHHHHc
Q 011700 301 PLKLLGETRRLEHVDSARKSAKHAVAAIM 329 (479)
Q Consensus 301 ~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 329 (479)
|.. ..++....|..++-+|+.
T Consensus 337 Pns--------KTaAAvaaq~~vv~~nl~ 357 (446)
T KOG3851|consen 337 PNS--------KTAAAVAAQSPVVDKNLT 357 (446)
T ss_pred Cch--------hhHHHHHhcCchhhhhHH
Confidence 865 444444556666767764
No 79
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.86 E-value=3.7e-21 Score=172.26 Aligned_cols=266 Identities=24% Similarity=0.390 Sum_probs=177.0
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC----CCCCCcccccccCCCCCCCCCCcccccCCcccCCC-HhH
Q 011700 6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA----PYERPALSKGYLLPEAPARLPSFHTCVGANEERLT-PKW 80 (479)
Q Consensus 6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 80 (479)
+.+|||||+||.+||.+|+.+ .+.++|.++..++.. .|.. +.+ ++. .|.. .+.. .++
T Consensus 1 kfivvgggiagvscaeqla~~-~psa~illitass~vksvtn~~~--i~~-yle--------kfdv------~eq~~~el 62 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQL-EPSAEILLITASSFVKSVTNYQK--IGQ-YLE--------KFDV------KEQNCHEL 62 (334)
T ss_pred CeEEEcCccccccHHHHHHhh-CCCCcEEEEeccHHHHHHhhHHH--HHH-HHH--------hcCc------cccchhhh
Confidence 479999999999999999985 567789999888641 1100 000 000 0000 0000 000
Q ss_pred HHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcC
Q 011700 81 YNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSC 160 (479)
Q Consensus 81 ~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~ 160 (479)
..+.. +++ + .|..++...+.+++.+|..+.|++|+++||.+|..-. .+ -.+.+...++.+.++.++..+..
T Consensus 63 g~~f~-~~~-~-~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPklq~----E~-~n~~Iv~irDtDsaQllq~kl~k- 133 (334)
T KOG2755|consen 63 GPDFR-RFL-N-DVVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPKLQV----EG-INPKIVGIRDTDSAQLLQCKLVK- 133 (334)
T ss_pred cccHH-HHH-H-hhhhhccccceEEecCCceeeEEEEEEecCCCcceee----cC-CCceEEEEecCcHHHHHHHHHhh-
Confidence 00000 111 2 2556667788999999999999999999999997543 33 23567788888888888888874
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCC----cE--------EEcCCc--
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKG----VK--------FVKGTV-- 226 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~G----V~--------i~~~~~-- 226 (479)
.|.|+|+|.|-+++|++.++. ..+|++....+.+-..+|+|.+++.+...|+..+ |. .+.++.
T Consensus 134 -aK~VlilgnGgia~El~yElk--~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n 210 (334)
T KOG2755|consen 134 -AKIVLILGNGGIAMELTYELK--ILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEEN 210 (334)
T ss_pred -cceEEEEecCchhHHHHHHhh--cceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCccccc
Confidence 799999999999999999884 6789999999888888889988887766662111 11 110000
Q ss_pred ---------------eEEE-------------------EEcCCCcEEEEEeCCC--cEEeccEEEEecCCCCChhhhh-c
Q 011700 227 ---------------LSSF-------------------DVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTSLFE-G 269 (479)
Q Consensus 227 ---------------v~~i-------------------~~~~~g~v~~v~~~~g--~~i~~D~Vi~a~G~~p~~~l~~-~ 269 (479)
...+ .++....+......++ ..+.+|.++.++|..||+++.- .
T Consensus 211 ~vg~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~ 290 (334)
T KOG2755|consen 211 NVGPALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNK 290 (334)
T ss_pred CcccccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhcccccccccccccceeeeeEEEeccccCcCceEEecC
Confidence 0000 0000000000000111 3578999999999999998543 3
Q ss_pred cccc-ccCcEEEcCcccCCCCCeEEEeeecccc
Q 011700 270 QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFP 301 (479)
Q Consensus 270 ~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~ 301 (479)
.+.. ++|++.||+.|+|+.|++||+||++...
T Consensus 291 ~lq~~edggikvdd~m~tslpdvFa~gDvctt~ 323 (334)
T KOG2755|consen 291 MLQITEDGGIKVDDAMETSLPDVFAAGDVCTTT 323 (334)
T ss_pred hhhhccccCeeehhhccccccceeeecceeccC
Confidence 3555 7899999999999999999999999843
No 80
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.85 E-value=1.3e-20 Score=194.89 Aligned_cols=299 Identities=16% Similarity=0.242 Sum_probs=158.1
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CC--C-C-----cccccccC--CCCCCCCCCcccc----
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YE--R-P-----ALSKGYLL--PEAPARLPSFHTC---- 68 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~--~-~-----~l~~~~~~--~~~~~~~~~~~~~---- 68 (479)
++|+|||||++||++|+.|.+.|++ ++++|+++... |. . + .+...+.. +.....+++|...
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~---~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p 78 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLE---VTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYP 78 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-E---EEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCC---CeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCC
Confidence 6899999999999999999999987 89999998632 11 0 0 00000000 0001112222211
Q ss_pred ---cCCcccCCCHhHHHHcCc--EEEeCceEEEEECCC-------cEEEeCC-C--cEEEeceEEeecCC--Cccccccc
Q 011700 69 ---VGANEERLTPKWYNEHGI--ELVLGTRVKSADVRR-------KTLVTAT-G--ETISYKILIIATGA--RALKLEEF 131 (479)
Q Consensus 69 ---~~~~~~~~~~~~~~~~gv--~~~~~~~v~~i~~~~-------~~v~~~~-g--~~~~~d~lviAtG~--~~~~~~~~ 131 (479)
...+...+++.+.+++++ .+..+++|.++.... ..|.+.+ | ++-.||+||+|||. .|..|. +
T Consensus 79 ~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~-~ 157 (531)
T PF00743_consen 79 DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPE-P 157 (531)
T ss_dssp SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB----
T ss_pred CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCCh-h
Confidence 111122334455556665 467788999887431 3455543 3 34579999999995 477664 1
Q ss_pred CCCCCC--CCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc-cccccC------
Q 011700 132 GLSGSD--AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH-CMARLF------ 202 (479)
Q Consensus 132 g~~g~~--~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-~l~~~~------ 202 (479)
.+||.+ ...+++.+++.+.+. +.+|+|+|||+|.+|+++|..|++...+|++..|+.. ++++..
T Consensus 158 ~~~G~e~F~G~i~HS~~yr~~~~-------f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~ 230 (531)
T PF00743_consen 158 SFPGLEKFKGEIIHSKDYRDPEP-------FKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPF 230 (531)
T ss_dssp --CTGGGHCSEEEEGGG--TGGG-------GTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC----------------
T ss_pred hhhhhhcCCeeEEccccCcChhh-------cCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccc
Confidence 135543 234666666655433 3689999999999999999999999999999888743 222211
Q ss_pred ----------------CHHHHHHH-HHHHH--------------------------------hCCcEEEcCCceEEEEEc
Q 011700 203 ----------------TPKIASYY-EEYYK--------------------------------SKGVKFVKGTVLSSFDVD 233 (479)
Q Consensus 203 ----------------~~~~~~~~-~~~l~--------------------------------~~GV~i~~~~~v~~i~~~ 233 (479)
+..+.+.+ .+.+. ...|.+. ..|.++..
T Consensus 231 D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk--~~I~~~~~- 307 (531)
T PF00743_consen 231 DMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVK--PDIKRFTE- 307 (531)
T ss_dssp --------------------------------------------------------------------E--E-EEEE-S-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccc-
Confidence 11111111 11110 0011111 12333321
Q ss_pred CCCcEEEEEeCCCcEE-eccEEEEecCCCCChhhhhcccc-cccCcEEEcCccc---CCCCCeEEEeeeccccccccCce
Q 011700 234 SNGKVVAVNLRDGNRL-PTDMVVVGIGIRPNTSLFEGQLT-LEKGGIKVTGRLQ---SSNSSVYAVGDVAAFPLKLLGET 308 (479)
Q Consensus 234 ~~g~v~~v~~~~g~~i-~~D~Vi~a~G~~p~~~l~~~~~~-~~~g~i~Vd~~l~---t~~~~IyA~GD~~~~~~~~~g~~ 308 (479)
..+.+.||+++ ++|.||+|||++...++++..+. ..++.+..-.++- ...|++..+|=+....
T Consensus 308 -----~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~~~~~~~LYk~vfp~~~~~ptLafIG~~~~~g------- 375 (531)
T PF00743_consen 308 -----NSVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIKVDDNRVRLYKHVFPPNLDHPTLAFIGLVQPFG------- 375 (531)
T ss_dssp -----SEEEETTSEEEEE-SEEEE---EE---TTB-TTTT-S-SSSSSEETTTEETETTSTTEEESS-SBSSS-------
T ss_pred -----cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------
Confidence 15778999875 69999999999998888876533 2344333333332 2458899999764311
Q ss_pred eecccHHHHHHHHHHHHHHHcCCC
Q 011700 309 RRLEHVDSARKSAKHAVAAIMEPD 332 (479)
Q Consensus 309 ~~~~~~~~A~~~g~~aa~~i~~~~ 332 (479)
...+.+..|++.+++-+.|..
T Consensus 376 ---~~fp~~ElQArw~a~v~sG~~ 396 (531)
T PF00743_consen 376 ---SIFPIFELQARWAARVFSGRV 396 (531)
T ss_dssp ----HHHHHHHHHHHHHHHHTTSS
T ss_pred ---ccccccccccccccccccccc
Confidence 235568889999999887754
No 81
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.84 E-value=1.4e-20 Score=189.75 Aligned_cols=288 Identities=25% Similarity=0.310 Sum_probs=195.5
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+|.|||+|||||+||..|++.|+. |+++|+.+. ..+++.. .+|.+... .+......+.+.+
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~---Vtv~e~~~~--------~GGll~y----GIP~~kl~--k~i~d~~i~~l~~ 185 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHD---VTVFERVAL--------DGGLLLY----GIPDFKLP--KDILDRRLELLER 185 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCe---EEEeCCcCC--------CceeEEe----cCchhhcc--chHHHHHHHHHHH
Confidence 37899999999999999999999998 899988864 2223221 12332211 1122344567888
Q ss_pred cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCC-cccccccCCCCCCCCCeEEecCHHHHHHHHHHHhc---
Q 011700 84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGAR-ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKS--- 159 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~-~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~--- 159 (479)
.|++|+.++++- +.++.+. -.-.||.++++||+. |+..++ +|.+.++++...++....... .+..
T Consensus 186 ~Gv~~~~~~~vG------~~it~~~-L~~e~Dav~l~~G~~~~~~l~i---~g~d~~gv~~A~dfL~~~~~~-~~~~~~~ 254 (457)
T COG0493 186 SGVEFKLNVRVG------RDITLEE-LLKEYDAVFLATGAGKPRPLDI---PGEDAKGVAFALDFLTRLNKE-VLGDFAE 254 (457)
T ss_pred cCeEEEEcceEC------CcCCHHH-HHHhhCEEEEeccccCCCCCCC---CCcCCCcchHHHHHHHHHHHH-Hhccccc
Confidence 999999986543 1111111 123579999999976 555554 787777776544332211111 1110
Q ss_pred -----CCCCCEEEECCChHHHHHHHHHhhCCC-eEEEEeecCccccc-cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEE
Q 011700 160 -----CSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMAR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 232 (479)
Q Consensus 160 -----~~~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~l~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~ 232 (479)
..+++++|||+|.++++++....+.|. +|+.+.+...--.. ..+....+...+...++|+.+.......++..
T Consensus 255 ~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~ 334 (457)
T COG0493 255 DRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIG 334 (457)
T ss_pred ccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEee
Confidence 123899999999999999999999987 67777532211000 01222344556667788999999999999998
Q ss_pred cCCCcEEEEEeCC-------------------C--cEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcCcc-cC
Q 011700 233 DSNGKVVAVNLRD-------------------G--NRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRL-QS 286 (479)
Q Consensus 233 ~~~g~v~~v~~~~-------------------g--~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~l-~t 286 (479)
+++|++..+.+.. | .++++|.|+.++|+.++.... ...+.. ..|.|.+|+.+ +|
T Consensus 335 ~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~t 414 (457)
T COG0493 335 NEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQT 414 (457)
T ss_pred cCCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccc
Confidence 7788777654311 2 257899999999998885432 223444 56889999998 99
Q ss_pred CCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHc
Q 011700 287 SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 329 (479)
Q Consensus 287 ~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 329 (479)
+.|++||.||+.... ..+..|+.+|+.+|+.|-
T Consensus 415 s~~~vfa~gD~~~g~----------~~vv~ai~eGr~aak~i~ 447 (457)
T COG0493 415 SIPGVFAGGDAVRGA----------ALVVWAIAEGREAAKAID 447 (457)
T ss_pred cCCCeeeCceeccch----------hhhhhHHhhchHHHHhhh
Confidence 999999999999863 456778999999998774
No 82
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.82 E-value=3e-19 Score=190.36 Aligned_cols=273 Identities=18% Similarity=0.162 Sum_probs=161.2
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CC-----------------CCcc-cccccCCCCCCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YE-----------------RPAL-SKGYLLPEAPARLP 63 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~-----------------~~~l-~~~~~~~~~~~~~~ 63 (479)
.++|+|||+||||++||.+|+++|++ |+++|+.+..+ |. +.+. .+++.......++|
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~---Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp~R~~ 459 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHN---VTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGITVRWD 459 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCe---EEEEccccccccccccccccchhhhhccchhhhccccCCcccccCccccch
Confidence 57999999999999999999999998 99999864311 11 0000 11111110011111
Q ss_pred CcccccCCcccCCCHhHHHHc--CcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCC-CcccccccCCCCCCCCC
Q 011700 64 SFHTCVGANEERLTPKWYNEH--GIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGA-RALKLEEFGLSGSDAEN 140 (479)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~--gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~-~~~~~~~~g~~g~~~~~ 140 (479)
. ..... ...+.+. +++++.++. .. ..++.++-....||+|+||||+ .|+.+++ ||.+..+
T Consensus 460 k-------~~l~~-i~~il~~g~~v~~~~gv~-lG-----~dit~edl~~~gyDAV~IATGA~kpr~L~I---PGeda~G 522 (1028)
T PRK06567 460 K-------NNLDI-LRLILERNNNFKYYDGVA-LD-----FNITKEQAFDLGFDHIAFCIGAGQPKVLDI---ENFEAKG 522 (1028)
T ss_pred H-------HHHHH-HHHHHhcCCceEEECCeE-EC-----ccCCHHHHhhcCCCEEEEeCCCCCCCCCCC---CCccCCC
Confidence 0 00000 1111222 466665643 21 1122222124579999999999 6888877 7777777
Q ss_pred eEEecCHHHHHHHHHHH-----hc-CCCCCEEEECCChHHHHHHHHHhh-------------------------------
Q 011700 141 VCYLRDLADANRLVNVM-----KS-CSGGNAVVIGGGYIGMECAASLVI------------------------------- 183 (479)
Q Consensus 141 v~~~~~~~~~~~l~~~l-----~~-~~~~~vvVIGgG~~g~E~A~~l~~------------------------------- 183 (479)
+++..++.......... .. ..+++|+|||||++|+|+|.....
T Consensus 523 V~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~ 602 (1028)
T PRK06567 523 VKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIA 602 (1028)
T ss_pred eEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHH
Confidence 87655432221111000 00 025799999999999999983321
Q ss_pred --------------------CCCeEEEEeecCcc-ccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEE
Q 011700 184 --------------------NKINVTMVFPEAHC-MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN 242 (479)
Q Consensus 184 --------------------~g~~Vtlv~~~~~~-l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~ 242 (479)
.|. |+++.|...- +|. .. -..+.+.+ ..+.||+|+.+..+.+|..+++|++..++
T Consensus 603 h~r~~g~~~~~~~v~~l~~~~G~-VtIvYRr~~~empA-~~-~~~eEv~~-A~eEGV~f~~~~~P~~i~~d~~g~v~~l~ 678 (1028)
T PRK06567 603 HAKLFKEAKNNEELRKVFNKLGG-ATVYYRGRLQDSPA-YK-LNHEELIY-ALALGVDFKENMQPLRINVDKYGHVESVE 678 (1028)
T ss_pred HHHhhcchhccchhhhhhccCCc-eEEEecCChhhCCC-CC-CCHHHHHH-HHHcCcEEEecCCcEEEEecCCCeEEEEE
Confidence 222 8888776432 221 10 00122332 34579999999999999876667777665
Q ss_pred eC--------------C-C---------------cEEeccEEEEecCCCCChhhhhcccccccCcEEEcCcccCCCCCeE
Q 011700 243 LR--------------D-G---------------NRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVY 292 (479)
Q Consensus 243 ~~--------------~-g---------------~~i~~D~Vi~a~G~~p~~~l~~~~~~~~~g~i~Vd~~l~t~~~~Iy 292 (479)
+. + + .+++||.|++|+|..||+.+.. .+..+-++.+++|
T Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~~-----------~~~s~~~d~~~~f 747 (1028)
T PRK06567 679 FENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFDE-----------DKYSYFGDCNPKY 747 (1028)
T ss_pred EEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCcccccc-----------cccccccCCCCcc
Confidence 42 1 1 3689999999999999998631 1112334556666
Q ss_pred EEeeeccccccccCceeecccHHHHHHHHHHHHHHHc
Q 011700 293 AVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 329 (479)
Q Consensus 293 A~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 329 (479)
+- ++..|+.+|+.++.+|.
T Consensus 748 ~G------------------tvv~A~as~k~~~~~i~ 766 (1028)
T PRK06567 748 SG------------------SVVKALASSKEGYDAIN 766 (1028)
T ss_pred cc------------------HHHHHHHHHHhHHHHHH
Confidence 43 35568888888888883
No 83
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.82 E-value=2.1e-21 Score=177.85 Aligned_cols=148 Identities=31% Similarity=0.484 Sum_probs=96.4
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCccc-CCCHhHHHHc
Q 011700 6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEE-RLTPKWYNEH 84 (479)
Q Consensus 6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 84 (479)
|||||||||||++||.+|++.+.+ ++++++.+..++...++....+..... .... . .... ....+.+...
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~---v~ii~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~-~~~~~~~~~~~~~~~ 71 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAK---VLIIEKSPGTPYNSGCIPSPLLVEIAP----HRHE-F-LPARLFKLVDQLKNR 71 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSE---EEEESSSSHHHHHHSHHHHHHHHHHHH----HHHH-H-HHHHHGHHHHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCe---EEEEecccccccccccccccccccccc----cccc-c-ccccccccccccccc
Confidence 799999999999999999987776 999988875444433332221110000 0000 0 0000 0122234678
Q ss_pred CcEEEeCceEEEEECCCcEE----------EeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHH
Q 011700 85 GIELVLGTRVKSADVRRKTL----------VTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLV 154 (479)
Q Consensus 85 gv~~~~~~~v~~i~~~~~~v----------~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~ 154 (479)
++++..++++.+++...+.+ ...++.++.||+||||||+.|+.|++ +|.+ .....+...++.++.
T Consensus 72 ~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i---~g~~--~~~~~~~~~~~~~~~ 146 (201)
T PF07992_consen 72 GVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNI---PGEE--VAYFLRGVDDAQRFL 146 (201)
T ss_dssp THEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESS---TTTT--TECBTTSEEHHHHHH
T ss_pred eEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeec---CCCc--ccccccccccccccc
Confidence 99998888999999887742 12345789999999999999988876 5542 233345666677776
Q ss_pred HHHhcCCCCCEEEEC
Q 011700 155 NVMKSCSGGNAVVIG 169 (479)
Q Consensus 155 ~~l~~~~~~~vvVIG 169 (479)
..... +++++|||
T Consensus 147 ~~~~~--~~~v~VvG 159 (201)
T PF07992_consen 147 ELLES--PKRVAVVG 159 (201)
T ss_dssp THSST--TSEEEEES
T ss_pred ccccc--cccccccc
Confidence 65543 45999999
No 84
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.75 E-value=6.5e-18 Score=154.96 Aligned_cols=174 Identities=25% Similarity=0.352 Sum_probs=101.8
Q ss_pred EEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CC----CCcc-cccccCCCCCCCCCCc---c-----------
Q 011700 8 VIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YE----RPAL-SKGYLLPEAPARLPSF---H----------- 66 (479)
Q Consensus 8 vIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~----~~~l-~~~~~~~~~~~~~~~~---~----------- 66 (479)
+||||||+||++|.+|.++|.+. ++|+|+++... |. .+.+ +..... ....++.+ .
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~--v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 76 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDP--VVVLERNDRPGGVWRRYYSYTRLHSPSFFS--SDFGLPDFESFSFDDSPEWRWPH 76 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----EEEEESSSSSTTHHHCH-TTTT-BSSSCCT--GGSS--CCCHSCHHHHHHHHHSB
T ss_pred CEECcCHHHHHHHHHHHhCCCCc--EEEEeCCCCCCCeeEEeCCCCccccCcccc--ccccCCcccccccccCCCCCCCc
Confidence 79999999999999999998864 99999986421 11 0111 000000 00111111 0
Q ss_pred -cccCCcccCCCHhHHHHcCcEEEeCceEEEEECCC--cEEEeCCCcEEEeceEEeecCC--CcccccccCCCC-CCCCC
Q 011700 67 -TCVGANEERLTPKWYNEHGIELVLGTRVKSADVRR--KTLVTATGETISYKILIIATGA--RALKLEEFGLSG-SDAEN 140 (479)
Q Consensus 67 -~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~--~~v~~~~g~~~~~d~lviAtG~--~~~~~~~~g~~g-~~~~~ 140 (479)
.....+...++..+.++++++++.+++|.++..++ ..|++.+++++.+|+||+|||. .|+.|++ ++ .+. .
T Consensus 77 ~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~---~g~~~~-~ 152 (203)
T PF13738_consen 77 DFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDI---PGSAFR-P 152 (203)
T ss_dssp SSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S----TTGGCS-E
T ss_pred ccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCcccc---cccccc-c
Confidence 01111112334455667899999999999987654 5778888888999999999995 6777766 55 332 4
Q ss_pred eEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc
Q 011700 141 VCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 196 (479)
Q Consensus 141 v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 196 (479)
.++..+..+.. ...+++|+|||+|.+|++++..|.+.|.+|+++.|++.
T Consensus 153 ~~h~~~~~~~~-------~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 153 IIHSADWRDPE-------DFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp EEEGGG-STTG-------GCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred eEehhhcCChh-------hcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 44443332222 23689999999999999999999999999999999864
No 85
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.72 E-value=6.3e-17 Score=158.99 Aligned_cols=248 Identities=21% Similarity=0.269 Sum_probs=133.2
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccc------cc----CCCCCCCCCCc---ccccC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKG------YL----LPEAPARLPSF---HTCVG 70 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~------~~----~~~~~~~~~~~---~~~~~ 70 (479)
.+|+|+||.||++|+.|..|...+ ..++.++|+.+.+.|...++..+ ++ ....+...-.| ....+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~--~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~ 79 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHG--DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG 79 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH-----EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcC--CCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence 489999999999999999998876 23489999998776654332111 11 11111100000 00000
Q ss_pred Cc-----------ccC---CCHhHHH-HcCcEEEeCceEEEEECCC------cEEEeC----CCcEEEeceEEeecCCCc
Q 011700 71 AN-----------EER---LTPKWYN-EHGIELVLGTRVKSADVRR------KTLVTA----TGETISYKILIIATGARA 125 (479)
Q Consensus 71 ~~-----------~~~---~~~~~~~-~~gv~~~~~~~v~~i~~~~------~~v~~~----~g~~~~~d~lviAtG~~~ 125 (479)
.. ... .+.+|.. +..-.+..+++|.+|++.. ..|.+. +++++.++.||||||..|
T Consensus 80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P 159 (341)
T PF13434_consen 80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQP 159 (341)
T ss_dssp -HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE
T ss_pred ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCC
Confidence 00 000 1112222 2343377788999998654 245552 346899999999999999
Q ss_pred ccccccCCCCCC-CCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCC--eEEEEeecCccccc--
Q 011700 126 LKLEEFGLSGSD-AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMAR-- 200 (479)
Q Consensus 126 ~~~~~~g~~g~~-~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~--~Vtlv~~~~~~l~~-- 200 (479)
..|+.. .... .+.+++..++.....- ...+++|+|||||.+|.|++..|.+.+. +|+++.|++.+.+.
T Consensus 160 ~iP~~~--~~~~~~~~v~Hss~~~~~~~~-----~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~ 232 (341)
T PF13434_consen 160 RIPEWF--QDLPGSPRVFHSSEYLSRIDQ-----SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDD 232 (341)
T ss_dssp ---GGG--GGGTT-TTEEEGGGHHHHHT----------EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB---
T ss_pred CCCcch--hhcCCCCCEEEehHhhhcccc-----ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCcc
Confidence 988763 3222 3678877665433211 1257999999999999999999988764 89999998654431
Q ss_pred ------cCCHHHH-------------------------------HHHHH-----HH-HhCCcEEEcCCceEEEEEcCCCc
Q 011700 201 ------LFTPKIA-------------------------------SYYEE-----YY-KSKGVKFVKGTVLSSFDVDSNGK 237 (479)
Q Consensus 201 ------~~~~~~~-------------------------------~~~~~-----~l-~~~GV~i~~~~~v~~i~~~~~g~ 237 (479)
.|+|+.. +.+-+ .+ .+..++++.+++|+.++..+++.
T Consensus 233 s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~ 312 (341)
T PF13434_consen 233 SPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGG 312 (341)
T ss_dssp -CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SS
T ss_pred ccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCE
Confidence 2333322 11111 11 22357899999999999866544
Q ss_pred EEEEEeCC---C--cEEeccEEEEecCCC
Q 011700 238 VVAVNLRD---G--NRLPTDMVVVGIGIR 261 (479)
Q Consensus 238 v~~v~~~~---g--~~i~~D~Vi~a~G~~ 261 (479)
+ .+.+.+ + .++++|.||+|||++
T Consensus 313 ~-~l~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 313 V-RLTLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp E-EEEEEETTT--EEEEEESEEEE---EE
T ss_pred E-EEEEEECCCCCeEEEecCEEEEcCCcc
Confidence 3 344443 2 478999999999975
No 86
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.71 E-value=3.8e-16 Score=156.96 Aligned_cols=160 Identities=18% Similarity=0.163 Sum_probs=115.4
Q ss_pred CCEEEECCChHHHHHH-HHHh----hCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCc
Q 011700 163 GNAVVIGGGYIGMECA-ASLV----INKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGK 237 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A-~~l~----~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~ 237 (479)
..=.|++.+.+|+|.+ ..++ ++|.+|+++...+..++. .++.+.+.+.+++.|++++++++|.+++.. ++.
T Consensus 216 ~~~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG---~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~ 291 (422)
T PRK05329 216 DAEAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPG---LRLQNALRRAFERLGGRIMPGDEVLGAEFE-GGR 291 (422)
T ss_pred CCCEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCch---HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCE
Confidence 3346788899999998 6665 469999999988887764 478889999999999999999999999873 455
Q ss_pred EEEEEeCCCc--EEeccEEEEecCCCCChhhhh-----------ccc------------------ccccCcEEEcCccc-
Q 011700 238 VVAVNLRDGN--RLPTDMVVVGIGIRPNTSLFE-----------GQL------------------TLEKGGIKVTGRLQ- 285 (479)
Q Consensus 238 v~~v~~~~g~--~i~~D~Vi~a~G~~p~~~l~~-----------~~~------------------~~~~g~i~Vd~~l~- 285 (479)
+..+...+++ .+++|.|++|+|+.++..+.. ..+ ....-+|.+|+++|
T Consensus 292 V~~v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p 371 (422)
T PRK05329 292 VTAVWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRP 371 (422)
T ss_pred EEEEEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCc
Confidence 5555555553 589999999999876654410 000 11123466666665
Q ss_pred ------CCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700 286 ------SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 286 ------t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~ 330 (479)
+.++|+||+|++.+.+++.... .....|+..|..|+++|..
T Consensus 372 ~~~~g~~~~~nl~a~G~vl~g~d~~~~~----~g~Gva~~ta~~a~~~~~~ 418 (422)
T PRK05329 372 LDSQGGPVIENLYAAGAVLGGYDPIREG----CGSGVALATALHAAEQIAE 418 (422)
T ss_pred ccCCCCeeccceEEeeehhcCCchHHhC----CCchhHHHHHHHHHHHHHH
Confidence 4589999999999988764211 1123567778888888764
No 87
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.71 E-value=5.8e-15 Score=141.53 Aligned_cols=316 Identities=16% Similarity=0.203 Sum_probs=191.3
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccc----------cccCCCCCCCCCCccc---
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSK----------GYLLPEAPARLPSFHT--- 67 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~----------~~~~~~~~~~~~~~~~--- 67 (479)
|++.+|+|.||-||+-|+.|..|...+. .+...+|+.+.+.|+..++.. .+.....+...-.|..
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~--~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~ 79 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSG--LKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLH 79 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccC--cceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHH
Confidence 6678999999999999999998887653 338999999987776433311 1111111111000000
Q ss_pred c--------------cCCcccCCCHhHHHHcCcEEEeCceEE---EEECCCcE---EEeCCCcEEEeceEEeecCCCccc
Q 011700 68 C--------------VGANEERLTPKWYNEHGIELVLGTRVK---SADVRRKT---LVTATGETISYKILIIATGARALK 127 (479)
Q Consensus 68 ~--------------~~~~~~~~~~~~~~~~gv~~~~~~~v~---~i~~~~~~---v~~~~g~~~~~d~lviAtG~~~~~ 127 (479)
. +-..+...+..|....--.++.+++|. +++.+... +.+.++..++++.|||.+|.+|.+
T Consensus 80 ~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~I 159 (436)
T COG3486 80 EHGRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYI 159 (436)
T ss_pred HcchHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCC
Confidence 0 000001112234444445677788888 44444332 445666789999999999999999
Q ss_pred ccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhC----CCeEEEEeecCccccc---
Q 011700 128 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN----KINVTMVFPEAHCMAR--- 200 (479)
Q Consensus 128 ~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~----g~~Vtlv~~~~~~l~~--- 200 (479)
|+.+ .....+++++...+.. ...+-...++|.|||+|-+|.|+-..|... ..++.++.|+..++|.
T Consensus 160 P~~f--~~l~~~~vfHss~~~~-----~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~S 232 (436)
T COG3486 160 PPCF--RSLIGERVFHSSEYLE-----RHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYS 232 (436)
T ss_pred ChHH--hCcCccceeehHHHHH-----hhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccc
Confidence 9763 4444567776544321 111111234499999999999998888653 4468889998766542
Q ss_pred -----cCCHHHHHHH-----------------------------------HHHH--HhCCcEEEcCCceEEEEEcCCCcE
Q 011700 201 -----LFTPKIASYY-----------------------------------EEYY--KSKGVKFVKGTVLSSFDVDSNGKV 238 (479)
Q Consensus 201 -----~~~~~~~~~~-----------------------------------~~~l--~~~GV~i~~~~~v~~i~~~~~g~v 238 (479)
.|.|+..+.+ ++.+ .+..|.++.++++..++...+|+
T Consensus 233 kf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~- 311 (436)
T COG3486 233 KFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGR- 311 (436)
T ss_pred hhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCce-
Confidence 1222222111 1111 13468899999999999866675
Q ss_pred EEEEeC-----CCcEEeccEEEEecCCCCChh-hhh---ccccc-ccCcEEEcCcccCCC-----CCeEEEeeecccccc
Q 011700 239 VAVNLR-----DGNRLPTDMVVVGIGIRPNTS-LFE---GQLTL-EKGGIKVTGRLQSSN-----SSVYAVGDVAAFPLK 303 (479)
Q Consensus 239 ~~v~~~-----~g~~i~~D~Vi~a~G~~p~~~-l~~---~~~~~-~~g~i~Vd~~l~t~~-----~~IyA~GD~~~~~~~ 303 (479)
..+.+. +.++++.|.||+|||++...+ +++ ..+.. ++|...|++.++... -.||+.|-+......
T Consensus 312 ~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~htHGi 391 (436)
T COG3486 312 YRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHTHGI 391 (436)
T ss_pred EEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEeccccccccc
Confidence 344442 225789999999999985554 433 23455 678899998766521 369999877654321
Q ss_pred ccCceeecccHHHHHHHHHHHHHHHcCCC
Q 011700 304 LLGETRRLEHVDSARKSAKHAVAAIMEPD 332 (479)
Q Consensus 304 ~~g~~~~~~~~~~A~~~g~~aa~~i~~~~ 332 (479)
|. +....+..-+..+++.+++..
T Consensus 392 --g~----pdLsl~a~Raa~I~~~L~g~~ 414 (436)
T COG3486 392 --GA----PDLSLGAWRAAVILNSLLGRE 414 (436)
T ss_pred --CC----ccchHHHHHHHHHHHHHhCcC
Confidence 22 122233334445567777754
No 88
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.70 E-value=5.1e-17 Score=169.38 Aligned_cols=285 Identities=20% Similarity=0.281 Sum_probs=165.8
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
.++|.|||.|||||+||-+|.+.|+. |++.|+.... .+++. ..+|.+... .....+-.+++.+
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~---v~vyer~dr~--------ggll~----ygipnmkld--k~vv~rrv~ll~~ 1847 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHT---VTVYERSDRV--------GGLLM----YGIPNMKLD--KFVVQRRVDLLEQ 1847 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcE---EEEEEecCCc--------Cceee----ecCCccchh--HHHHHHHHHHHHh
Confidence 47899999999999999999999997 8999998642 22221 122322110 0011233456778
Q ss_pred cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCC-cccccccCCCCCCCCCeEEecCHHHHHHHHHHHh----
Q 011700 84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGAR-ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMK---- 158 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~-~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~---- 158 (479)
.||+|+.++++- +.+.. ++-.-.+|.+|+|+|++ |+.+|+ ||.+..++++.-.+.... -+..+.
T Consensus 1848 egi~f~tn~eig------k~vs~-d~l~~~~daiv~a~gst~prdlpv---~grd~kgv~fame~l~~n-tk~lld~~~d 1916 (2142)
T KOG0399|consen 1848 EGIRFVTNTEIG------KHVSL-DELKKENDAIVLATGSTTPRDLPV---PGRDLKGVHFAMEFLEKN-TKSLLDSVLD 1916 (2142)
T ss_pred hCceEEeecccc------ccccH-HHHhhccCeEEEEeCCCCCcCCCC---CCccccccHHHHHHHHHh-HHhhhccccc
Confidence 899999886542 22222 33334689999999987 777777 888877775433222211 011111
Q ss_pred ----cCCCCCEEEECCChHHHHHHHHHhhCCCe-EEEEe--ecC-------cccc---ccCCHHH-HHHHHHHHHhCCcE
Q 011700 159 ----SCSGGNAVVIGGGYIGMECAASLVINKIN-VTMVF--PEA-------HCMA---RLFTPKI-ASYYEEYYKSKGVK 220 (479)
Q Consensus 159 ----~~~~~~vvVIGgG~~g~E~A~~l~~~g~~-Vtlv~--~~~-------~~l~---~~~~~~~-~~~~~~~l~~~GV~ 220 (479)
+..+|+|+|||||..|-+|...-.+.|++ |--++ +.+ .++| +.|--+. .+...+. .|-+
T Consensus 1917 ~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~---~g~d 1993 (2142)
T KOG0399|consen 1917 GNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEH---YGSD 1993 (2142)
T ss_pred cceeccCCCeEEEECCCCccccccccchhhccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHHH---hCCC
Confidence 12689999999999999998888888764 32222 111 1111 1111111 1111211 1222
Q ss_pred EEcCCc-eEEEEEcCCCcEEEEE------------------eCC-CcEEeccEEEEecCCCCChhhhhc--cccc-ccCc
Q 011700 221 FVKGTV-LSSFDVDSNGKVVAVN------------------LRD-GNRLPTDMVVVGIGIRPNTSLFEG--QLTL-EKGG 277 (479)
Q Consensus 221 i~~~~~-v~~i~~~~~g~v~~v~------------------~~~-g~~i~~D~Vi~a~G~~p~~~l~~~--~~~~-~~g~ 277 (479)
.++-+. -+++..+++|.++.++ ..+ .+.++||+|++|.|+..+-..... .+.. .++.
T Consensus 1994 pr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsn 2073 (2142)
T KOG0399|consen 1994 PRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSN 2073 (2142)
T ss_pred cceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCcccc
Confidence 111111 1123333333333222 222 246899999999998765543322 3444 3344
Q ss_pred EEE-cCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHc
Q 011700 278 IKV-TGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 329 (479)
Q Consensus 278 i~V-d~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 329 (479)
|.. ++.+.|+++.|||+|||-.... ++..|+.+|+.+|+.+-
T Consensus 2074 i~t~~~~y~t~v~~vfaagdcrrgqs----------lvvwai~egrq~a~~vd 2116 (2142)
T KOG0399|consen 2074 ILTPKDSYSTDVAKVFAAGDCRRGQS----------LVVWAIQEGRQAARQVD 2116 (2142)
T ss_pred ccCCCccccccccceeecccccCCce----------EEEEEehhhhHHHHHHH
Confidence 443 4568889999999999987643 23346778888887653
No 89
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.67 E-value=7.9e-16 Score=156.74 Aligned_cols=184 Identities=20% Similarity=0.248 Sum_probs=115.9
Q ss_pred CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCcccc-cccCCCCCCCCCCcccc------cCCc
Q 011700 2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YERPALSK-GYLLPEAPARLPSFHTC------VGAN 72 (479)
Q Consensus 2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~~~~l~~-~~~~~~~~~~~~~~~~~------~~~~ 72 (479)
++++||+|||||++|+++|..|.++|.+. ++++|++.... |....... .+-.+.....+|.+... ....
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~--~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~ 83 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPD--FVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAE 83 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCc--EEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCccc
Confidence 45689999999999999999999999876 99999996421 11100000 00001111122322221 0011
Q ss_pred ccCCCHhHHHHcCcE--EEeCceEEEEECCC----cEEEeCCCcE--EEeceEEeecC--CCcccccccCCCCCCC--CC
Q 011700 73 EERLTPKWYNEHGIE--LVLGTRVKSADVRR----KTLVTATGET--ISYKILIIATG--ARALKLEEFGLSGSDA--EN 140 (479)
Q Consensus 73 ~~~~~~~~~~~~gv~--~~~~~~v~~i~~~~----~~v~~~~g~~--~~~d~lviAtG--~~~~~~~~~g~~g~~~--~~ 140 (479)
...+...++++++++ +...+.|..++.+. .+|+++++.+ +.+|+||+||| +.|+.|++ +|.+. ..
T Consensus 84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~---~G~~~f~g~ 160 (443)
T COG2072 84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDF---AGLDEFKGR 160 (443)
T ss_pred HHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCC---CCccCCCce
Confidence 123344556666543 23334444454433 3566766654 56999999999 55777777 55442 22
Q ss_pred eEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700 141 VCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 197 (479)
Q Consensus 141 v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 197 (479)
+++..+..+.+. ..+|+|+|||+|.+|++++..|.+.|.+||++.|++..
T Consensus 161 ~~HS~~~~~~~~-------~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~ 210 (443)
T COG2072 161 ILHSADWPNPED-------LRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH 210 (443)
T ss_pred EEchhcCCCccc-------cCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence 344444333333 26999999999999999999999999999999998754
No 90
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.64 E-value=1.1e-14 Score=141.44 Aligned_cols=197 Identities=21% Similarity=0.328 Sum_probs=115.9
Q ss_pred EEEeceEEeecCCCcccccccCCCCC-CCCCeEEecCHHHHHHHHH--------HHh---cCCCCCEEEE---CCCh---
Q 011700 111 TISYKILIIATGARALKLEEFGLSGS-DAENVCYLRDLADANRLVN--------VMK---SCSGGNAVVI---GGGY--- 172 (479)
Q Consensus 111 ~~~~d~lviAtG~~~~~~~~~g~~g~-~~~~v~~~~~~~~~~~l~~--------~l~---~~~~~~vvVI---GgG~--- 172 (479)
++....+|+|||-.++.+....--|. ..++|.+.- +.+++.. .++ -.+||+|++| |+-.
T Consensus 298 e~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~l---ElErml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~ 374 (622)
T COG1148 298 ELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITNL---ELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQV 374 (622)
T ss_pred EEEeceEEEEccccccCcchhhhcCCCCCcchhhHH---HHHHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCccc
Confidence 56788999999988765432110111 123443321 2223221 011 1257888875 5543
Q ss_pred ----H-------HHHHHHHHhhC--CCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEE
Q 011700 173 ----I-------GMECAASLVIN--KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV 239 (479)
Q Consensus 173 ----~-------g~E~A~~l~~~--g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~ 239 (479)
. ++.-|+...++ ..+|++....-+- +....-+++.+.-++.||+|+.+. +.+|...++++ .
T Consensus 375 ~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRa----fG~~yEefY~~~Q~~~gV~fIRGr-vaei~e~p~~~-l 448 (622)
T COG1148 375 GNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRA----FGKDYEEFYVRSQEDYGVRFIRGR-VAEIAEFPKKK-L 448 (622)
T ss_pred CChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeec----cCccHHHHHHhhhhhhchhhhcCC-hHHheeCCCCe-e
Confidence 1 22333444433 4578887766443 344445566666668899999885 67777655665 2
Q ss_pred EEEeCC---C--cEEeccEEEEecCCCCChhhhh----ccccc-ccCcEEEc-Ccc---cCCCCCeEEEeeecccccccc
Q 011700 240 AVNLRD---G--NRLPTDMVVVGIGIRPNTSLFE----GQLTL-EKGGIKVT-GRL---QSSNSSVYAVGDVAAFPLKLL 305 (479)
Q Consensus 240 ~v~~~~---g--~~i~~D~Vi~a~G~~p~~~l~~----~~~~~-~~g~i~Vd-~~l---~t~~~~IyA~GD~~~~~~~~~ 305 (479)
.|...| | .++++|+|++++|..|.....+ .++.. ++|++... +.+ +|+.++||.+|-|.++..
T Consensus 449 ~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqgPkd--- 525 (622)
T COG1148 449 IVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQGPKD--- 525 (622)
T ss_pred EEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccCCcc---
Confidence 354444 3 4789999999999998654222 23544 56777665 444 468899999998887643
Q ss_pred CceeecccHHHHHHHHHHHHHH
Q 011700 306 GETRRLEHVDSARKSAKHAVAA 327 (479)
Q Consensus 306 g~~~~~~~~~~A~~~g~~aa~~ 327 (479)
++.++.||..||..
T Consensus 526 --------I~~siaqa~aAA~k 539 (622)
T COG1148 526 --------IADSIAQAKAAAAK 539 (622)
T ss_pred --------HHHHHHHhHHHHHH
Confidence 44455555555443
No 91
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.62 E-value=1.7e-14 Score=144.82 Aligned_cols=272 Identities=16% Similarity=0.203 Sum_probs=148.8
Q ss_pred cCeEEEECCchHHHHHHHHHH-HcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFT-KRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN 82 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~-~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (479)
.++|+||||||||++||.+|+ +.|++ |+|+|+.+.+ | |++........+... .....+...+.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~---VtlfEk~p~p-g-------GLvR~GVaPdh~~~k-----~v~~~f~~~~~ 102 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVK---VDIFEKLPNP-Y-------GLIRYGVAPDHIHVK-----NTYKTFDPVFL 102 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCe---EEEEecCCCC-c-------cEEEEeCCCCCccHH-----HHHHHHHHHHh
Confidence 468999999999999999875 45665 9999999752 2 222211111111110 01112223344
Q ss_pred HcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCC------C-CCC----CCCeEEecCH----
Q 011700 83 EHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGL------S-GSD----AENVCYLRDL---- 147 (479)
Q Consensus 83 ~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~------~-g~~----~~~v~~~~~~---- 147 (479)
..+++++.+..+- ..+..++ -.-.||.||+|||+.+..+++++- . |.+ ..++|..+++
T Consensus 103 ~~~v~f~gnv~VG------~Dvt~ee-L~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WY 175 (506)
T PTZ00188 103 SPNYRFFGNVHVG------VDLKMEE-LRNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFHARDLIYFY 175 (506)
T ss_pred hCCeEEEeeeEec------CccCHHH-HHhcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEehheEEEee
Confidence 5677777442221 1111111 123799999999999765442110 0 222 2344332221
Q ss_pred ---HHH---HHHHHHHhcC-CCCCEEEECCChHHHHHHHHHh--------------------hCC-CeEEEEeecCccc-
Q 011700 148 ---ADA---NRLVNVMKSC-SGGNAVVIGGGYIGMECAASLV--------------------INK-INVTMVFPEAHCM- 198 (479)
Q Consensus 148 ---~~~---~~l~~~l~~~-~~~~vvVIGgG~~g~E~A~~l~--------------------~~g-~~Vtlv~~~~~~l- 198 (479)
.+. .....++... ..++++|||.|++++++|..|. +.+ .+|+++.|+...-
T Consensus 176 Ng~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~qa 255 (506)
T PTZ00188 176 NNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQS 255 (506)
T ss_pred cCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCHHHh
Confidence 111 0111122111 3578999999999999999753 223 3688888772110
Q ss_pred -------------cc---cCC-HH-----------------------HHHHHHHHHH----------hCCcEEEcCCceE
Q 011700 199 -------------AR---LFT-PK-----------------------IASYYEEYYK----------SKGVKFVKGTVLS 228 (479)
Q Consensus 199 -------------~~---~~~-~~-----------------------~~~~~~~~l~----------~~GV~i~~~~~v~ 228 (479)
+. .++ .+ ..+.+.++.. .+-+.+++...+.
T Consensus 256 aFT~kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F~~sP~ 335 (506)
T PTZ00188 256 SFTNAELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFYFEIR 335 (506)
T ss_pred CCCHHHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEEEccCCce
Confidence 00 000 00 1112333321 1346788888888
Q ss_pred EEEEcCCCcEEEEEeC-----------CC--cEEeccEEEEecCCCCChhhhhcccccccCcEEEcCcccC--CCCCeEE
Q 011700 229 SFDVDSNGKVVAVNLR-----------DG--NRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQS--SNSSVYA 293 (479)
Q Consensus 229 ~i~~~~~g~v~~v~~~-----------~g--~~i~~D~Vi~a~G~~p~~~l~~~~~~~~~g~i~Vd~~l~t--~~~~IyA 293 (479)
+|.. .++++..+++. .| +++++|+|+-++|++...- . ++.++ ..+.+. ..+. ..|++|+
T Consensus 336 ei~~-~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p~-~--g~pFd-~~~~n~-~grv~~~~~g~Y~ 409 (506)
T PTZ00188 336 QIRP-IDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSNF-A--ENLYN-QSVQMF-KEDIGQHKFAIFK 409 (506)
T ss_pred EEEC-CCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCCC-C--CCCcc-ccCCCC-CCcccCCCCCcEE
Confidence 8875 34677777665 23 3699999999999886531 1 12222 112111 1111 3699999
Q ss_pred Eeeeccccccc
Q 011700 294 VGDVAAFPLKL 304 (479)
Q Consensus 294 ~GD~~~~~~~~ 304 (479)
+|.+...|...
T Consensus 410 ~GWiKrGP~Gv 420 (506)
T PTZ00188 410 AGWFDKGPKGN 420 (506)
T ss_pred eeecCcCCCce
Confidence 99999887654
No 92
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.61 E-value=6.6e-15 Score=139.15 Aligned_cols=153 Identities=22% Similarity=0.320 Sum_probs=96.8
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+|.|||+||||+++|..|.++ ++..+|+++|+.|. ||. +.......+.|.... ....+.+.+++
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~-~~~~~Vdi~Ek~Pv-PFG-------LvRyGVAPDHpEvKn-----vintFt~~aE~ 85 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKR-HPNAHVDIFEKLPV-PFG-------LVRYGVAPDHPEVKN-----VINTFTKTAEH 85 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhc-CCCCeeEeeecCCc-ccc-------eeeeccCCCCcchhh-----HHHHHHHHhhc
Confidence 46899999999999999999996 55677999999985 332 222222222232211 11233445556
Q ss_pred cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCC-cccccccCCCCCCCCCeEEecCHHHHHHHHHHH-----
Q 011700 84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGAR-ALKLEEFGLSGSDAENVCYLRDLADANRLVNVM----- 157 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~-~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l----- 157 (479)
....++.+..+- ..+.+ ..-+-.||.+|||+|+. ++.+.+ ||.+..+|++.+.+-. +++-+
T Consensus 86 ~rfsf~gNv~vG------~dvsl-~eL~~~ydavvLaYGa~~dR~L~I---PGe~l~~V~Sarefv~---Wyng~P~~~~ 152 (468)
T KOG1800|consen 86 ERFSFFGNVKVG------RDVSL-KELTDNYDAVVLAYGADGDRRLDI---PGEELSGVISAREFVG---WYNGLPENQN 152 (468)
T ss_pred cceEEEecceec------ccccH-HHHhhcccEEEEEecCCCCcccCC---CCcccccceehhhhhh---hccCCCcccc
Confidence 667777664331 11111 11123699999999987 666666 8877788876554321 11100
Q ss_pred --hcCCCCCEEEECCChHHHHHHHHHhh
Q 011700 158 --KSCSGGNAVVIGGGYIGMECAASLVI 183 (479)
Q Consensus 158 --~~~~~~~vvVIGgG~~g~E~A~~l~~ 183 (479)
.+....+++|||.|.+++++|..|..
T Consensus 153 le~dls~~~vvIvG~GNVAlDvARiLls 180 (468)
T KOG1800|consen 153 LEPDLSGRKVVIVGNGNVALDVARILLS 180 (468)
T ss_pred cCcccccceEEEEccCchhhhhhhhhhC
Confidence 11247899999999999999988753
No 93
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.61 E-value=1.2e-14 Score=146.22 Aligned_cols=240 Identities=16% Similarity=0.174 Sum_probs=145.4
Q ss_pred CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCC--------ccccccc--CCCCCCCCCCccccc
Q 011700 2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YERP--------ALSKGYL--LPEAPARLPSFHTCV 69 (479)
Q Consensus 2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~~~--------~l~~~~~--~~~~~~~~~~~~~~~ 69 (479)
+...+|+|||||||||.+|+.|.+.|++ ++++|+.+... |..+ .+.+.+. .+.....++.|.+..
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~---v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~ 80 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHE---VVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPE 80 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCC---ceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcc
Confidence 3468999999999999999999999988 89999997632 1111 1111111 111222333333322
Q ss_pred CC--------cccCCCHhHHHHcCc--EEEeCceEEEEECCC---cEEEeCCC----cEEEeceEEeecCCC--cccccc
Q 011700 70 GA--------NEERLTPKWYNEHGI--ELVLGTRVKSADVRR---KTLVTATG----ETISYKILIIATGAR--ALKLEE 130 (479)
Q Consensus 70 ~~--------~~~~~~~~~~~~~gv--~~~~~~~v~~i~~~~---~~v~~~~g----~~~~~d~lviAtG~~--~~~~~~ 130 (479)
.. +...++..+.++.++ .+..+++|..++... ..|.+.++ ++..||.|++|||-. |+.|.+
T Consensus 81 ~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~ 160 (448)
T KOG1399|consen 81 RDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQI 160 (448)
T ss_pred cCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcC
Confidence 10 111233344455554 466677777777654 34555333 467899999999977 777766
Q ss_pred cCCC-CCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeec--CccccccCCHHHH
Q 011700 131 FGLS-GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE--AHCMARLFTPKIA 207 (479)
Q Consensus 131 ~g~~-g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~--~~~l~~~~~~~~~ 207 (479)
++.. ..-...+++.+++...+. +.+|+|+|||.|.+|+|++..++....+|++..+. ....+. .
T Consensus 161 ~g~~~~~f~G~~iHS~~Yk~~e~-------f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~~~~~~~~~~----~-- 227 (448)
T KOG1399|consen 161 PGPGIESFKGKIIHSHDYKSPEK-------FRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKVHVEPP----E-- 227 (448)
T ss_pred CCCchhhcCCcceehhhccCccc-------ccCceEEEECCCccHHHHHHHHHHhccCcceeeeccccccccc----c--
Confidence 3310 011234555555543333 25799999999999999999999998888887651 011110 0
Q ss_pred HHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhhcc
Q 011700 208 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ 270 (479)
Q Consensus 208 ~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~~ 270 (479)
. ...++..+.. +..+. +++ .+.+.++....+|.+++|||..-...+++..
T Consensus 228 -~-----~~~~~~~~~~--i~~~~--e~~---~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~ 277 (448)
T KOG1399|consen 228 -I-----LGENLWQVPS--IKSFT--EDG---SVFEKGGPVERVDRIIFCTGYKYKFPFLETL 277 (448)
T ss_pred -e-----eecceEEccc--ccccc--Ccc---eEEEcCceeEEeeeEEEeeeeEeecceeccC
Confidence 0 0112222222 44443 233 3445667788999999999999887776643
No 94
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.51 E-value=2.1e-13 Score=105.03 Aligned_cols=80 Identities=36% Similarity=0.592 Sum_probs=74.3
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL 243 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~ 243 (479)
+++|||+|++|+|+|..|.++|.+||++++++.+++ .+++++.+.+.+.++++||++++++.+++++.++++ +. |.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~ 77 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLP-GFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTL 77 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSST-TSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhh-hcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEE
Confidence 589999999999999999999999999999999995 589999999999999999999999999999987666 65 888
Q ss_pred CCC
Q 011700 244 RDG 246 (479)
Q Consensus 244 ~~g 246 (479)
+||
T Consensus 78 ~~g 80 (80)
T PF00070_consen 78 EDG 80 (80)
T ss_dssp ETS
T ss_pred ecC
Confidence 876
No 95
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.27 E-value=1.3e-09 Score=107.99 Aligned_cols=309 Identities=19% Similarity=0.282 Sum_probs=163.7
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC----CCCCCc--c----cccc--cC-CCCCCCCCCcccc---
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA----PYERPA--L----SKGY--LL-PEAPARLPSFHTC--- 68 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~----~~~~~~--l----~~~~--~~-~~~~~~~~~~~~~--- 68 (479)
++|+|||+|++|++.|.+|.+.-.....|.|+|+.+.. +|.... . ...- .. ++..+++-.+...
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 79999999999999999999975545559999999763 343211 0 0000 00 1101000000000
Q ss_pred -------cCCc-------------ccCCCHhHHHHcC---cEEEeCceEEEEECC----CcEEEeCCCcEEEeceEEeec
Q 011700 69 -------VGAN-------------EERLTPKWYNEHG---IELVLGTRVKSADVR----RKTLVTATGETISYKILIIAT 121 (479)
Q Consensus 69 -------~~~~-------------~~~~~~~~~~~~g---v~~~~~~~v~~i~~~----~~~v~~~~g~~~~~d~lviAt 121 (479)
...+ ...++..++++.. +.++.. +++++... ...+...+|....+|-+|+||
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~-~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat 160 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIRE-EATSVRQDTNAGGYLVTTADGPSEIADIIVLAT 160 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEee-eeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence 0000 0011111222222 555543 55555444 234566788888999999999
Q ss_pred CCCcccccc--cCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCC--eEEEEeecCcc
Q 011700 122 GARALKLEE--FGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHC 197 (479)
Q Consensus 122 G~~~~~~~~--~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~--~Vtlv~~~~~~ 197 (479)
|..+-.++. ..+++. .. +..+...+..+ +.+. ...+|+|+|+|...++....|.++|. ++|++.|+. +
T Consensus 161 gh~~~~~~~~~~~~~~~--~~--~ia~~~~~~~l-d~v~--~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG-l 232 (474)
T COG4529 161 GHSAPPADPAARDLKGS--PR--LIADPYPANAL-DGVD--ADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG-L 232 (474)
T ss_pred cCCCCCcchhhhccCCC--cc--eeccccCCccc-cccc--CCCceEEecCCchhHHHHHHHhccCCccceEEEeccc-c
Confidence 976533322 001111 11 12222122111 1111 24569999999999999999999875 688888773 1
Q ss_pred ccc------------cCC--------------------------------------------------------------
Q 011700 198 MAR------------LFT-------------------------------------------------------------- 203 (479)
Q Consensus 198 l~~------------~~~-------------------------------------------------------------- 203 (479)
++. ..+
T Consensus 233 ~~~~h~~~~~~p~~d~~~~p~~s~~~L~~~vR~~l~e~e~~g~~w~~v~D~lR~~~~~~wq~l~~~er~rf~rH~~~~~d 312 (474)
T COG4529 233 VPRPHIPVPYEPLGDFLSDPANSALSLLSIVRLLLREAEEAGQDWRDVVDGLRPQGQWIWQNLPAVERRRFERHLRPIWD 312 (474)
T ss_pred ccCCCCCCCccccccccchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHhhhhhhhHHHHhCCHHHHHHHHHhcccHHH
Confidence 111 000
Q ss_pred -------HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC--C-cEEeccEEEEecCCCCChh-----h--
Q 011700 204 -------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD--G-NRLPTDMVVVGIGIRPNTS-----L-- 266 (479)
Q Consensus 204 -------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~--g-~~i~~D~Vi~a~G~~p~~~-----l-- 266 (479)
+++...+.+.+.+.-++++.+ ++..|.....+..+.+.... . +++++|.||-|+|..+... +
T Consensus 313 vHr~R~a~~v~~~~~~~~a~G~~~l~ag-~~~~i~~~~eg~~v~~r~rg~~~~~~l~~~~VIn~~g~~~~~~~~s~~~L~ 391 (474)
T COG4529 313 VHRFRLAPAVQAAVPQLLAEGLLELVAG-RVVSIDREGEGRAVTYRERGKQHEEELDVDAVINTTGPAHDNSLSSDPFLR 391 (474)
T ss_pred HHHhhhhHHHHhhhhHHhhcchhheecC-ceeecccccCCceEEeeccccCccceeeeeEEEEcCCcCcCCCccchHHHH
Confidence 001111111111112334433 35555543444322333222 2 4789999999999766432 2
Q ss_pred --hhccccc---ccCcEEEcCcccC------CCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHc
Q 011700 267 --FEGQLTL---EKGGIKVTGRLQS------SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 329 (479)
Q Consensus 267 --~~~~~~~---~~g~i~Vd~~l~t------~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 329 (479)
.+.++.. .+.+|.|++..+. ..++.||+|-.+..... -+..++.-..|+..+|..++
T Consensus 392 sl~~~Gl~rpd~~~lGl~v~~~~~v~~~~g~~~~~~fa~Gplt~G~f~------ei~~vP~v~~qa~~~A~~l~ 459 (474)
T COG4529 392 SLGENGLARPDPPGLGLDVSDDSEVLGEDGERVTGLFAAGPLTRGTFW------EIDGVPDVRVQAARLAAQLA 459 (474)
T ss_pred HHHhCCccccCCCCCceeeCCCCcccCCCCccccCceeeccccCCchh------hhccChHHHHHHHHHHHHHh
Confidence 2334433 3568999988764 46799999988865421 11233444556777777666
No 96
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.21 E-value=3.5e-10 Score=109.32 Aligned_cols=86 Identities=13% Similarity=0.108 Sum_probs=63.9
Q ss_pred HHHHHHHhhCCCeEEEEeecCccccc-cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccE
Q 011700 175 MECAASLVINKINVTMVFPEAHCMAR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDM 253 (479)
Q Consensus 175 ~E~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~ 253 (479)
-++-..+.++|.+...- ...+++|. .-...+.+.+.+.+++.||+++++++|.+++.++ ....+.+.+|+++.||.
T Consensus 82 ~d~i~~~e~~Gi~~~e~-~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~t~~g~~i~~d~ 158 (408)
T COG2081 82 EDFIDWVEGLGIALKEE-DLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLDTSSGETVKCDS 158 (408)
T ss_pred HHHHHHHHhcCCeeEEc-cCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceEEEEcCCCCEEEccE
Confidence 34455566667665443 33455554 2346788899999999999999999999999733 34568888998999999
Q ss_pred EEEecC--CCCC
Q 011700 254 VVVGIG--IRPN 263 (479)
Q Consensus 254 Vi~a~G--~~p~ 263 (479)
+|+|+| .-|.
T Consensus 159 lilAtGG~S~P~ 170 (408)
T COG2081 159 LILATGGKSWPK 170 (408)
T ss_pred EEEecCCcCCCC
Confidence 999999 5553
No 97
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.18 E-value=4.2e-09 Score=105.02 Aligned_cols=123 Identities=17% Similarity=0.219 Sum_probs=87.1
Q ss_pred CCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC--cEEeccEEEEecCCCCChhhhh-----------
Q 011700 202 FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTSLFE----------- 268 (479)
Q Consensus 202 ~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~Vi~a~G~~p~~~l~~----------- 268 (479)
....+.+.+.+.+++.|++++.+++|.+++. +++.+..+.+.++ .++.+|.+|+|+|.--...+.+
T Consensus 261 ~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~-~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Epif~ 339 (419)
T TIGR03378 261 LGIRLEEALKHRFEQLGGVMLPGDRVLRAEF-EGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIFG 339 (419)
T ss_pred cHHHHHHHHHHHHHHCCCEEEECcEEEEEEe-eCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhcCceeeeccC
Confidence 3567788889999999999999999999987 4566666776665 4899999999999772222211
Q ss_pred cccc------------------cccCcEEEcCcccC-----CCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHH
Q 011700 269 GQLT------------------LEKGGIKVTGRLQS-----SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAV 325 (479)
Q Consensus 269 ~~~~------------------~~~g~i~Vd~~l~t-----~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa 325 (479)
..+. .-.-+|.+|+++|. .++|+||+|-+.+..+++... -....|+..|-.|+
T Consensus 340 L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~g----cG~GVai~Ta~~aa 415 (419)
T TIGR03378 340 LDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFEG----CGSGVAVSTALHAA 415 (419)
T ss_pred CCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChHhcC----CCchhHHHHHHHHH
Confidence 0010 01236889999983 389999999999987654311 11235677888888
Q ss_pred HHHc
Q 011700 326 AAIM 329 (479)
Q Consensus 326 ~~i~ 329 (479)
++|.
T Consensus 416 ~~i~ 419 (419)
T TIGR03378 416 EQII 419 (419)
T ss_pred HhhC
Confidence 8763
No 98
>PRK09897 hypothetical protein; Provisional
Probab=99.18 E-value=1.3e-08 Score=105.65 Aligned_cols=167 Identities=17% Similarity=0.216 Sum_probs=91.6
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC----CCCCCcccccccCCCCCCCC----CCcccc--------
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA----PYERPALSKGYLLPEAPARL----PSFHTC-------- 68 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~----~~~~~~l~~~~~~~~~~~~~----~~~~~~-------- 68 (479)
++|+||||||+|+++|.+|.+.+ ...+|+|||++... +|.....+.-++........ +.|...
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~-~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~ 80 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQ-TPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH 80 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcC-CCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence 69999999999999999999864 34569999997542 23221111101100000000 000000
Q ss_pred ---cC-------C-cc------cCCCHh-------HHHHcC--cEEEeCceEEEEECCCcE--EEeCC-CcEEEeceEEe
Q 011700 69 ---VG-------A-NE------ERLTPK-------WYNEHG--IELVLGTRVKSADVRRKT--LVTAT-GETISYKILII 119 (479)
Q Consensus 69 ---~~-------~-~~------~~~~~~-------~~~~~g--v~~~~~~~v~~i~~~~~~--v~~~~-g~~~~~d~lvi 119 (479)
.+ . .. ..++.. .+...| +.++.+++|++++.+... +.+.+ +..+.+|+||+
T Consensus 81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVL 160 (534)
T PRK09897 81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVI 160 (534)
T ss_pred HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEE
Confidence 00 0 00 000111 122344 677778899999776543 44434 46789999999
Q ss_pred ecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhC
Q 011700 120 ATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN 184 (479)
Q Consensus 120 AtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~ 184 (479)
|||..+..++ ++ . .. ++.+..+... +...++.+|+|+|.|.++++.+..|...
T Consensus 161 AtGh~~p~~~----~~-~-~~--yi~~pw~~~~----~~~i~~~~V~I~GtGLt~iD~v~~Lt~~ 213 (534)
T PRK09897 161 ATGHVWPDEE----EA-T-RT--YFPSPWSGLM----EAKVDACNVGIMGTSLSGLDAAMAVAIQ 213 (534)
T ss_pred CCCCCCCCCC----hh-h-cc--ccCCCCcchh----hcCCCCCeEEEECCCHHHHHHHHHHHhc
Confidence 9997532111 11 1 11 1112111111 1112468999999999999999888755
No 99
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.09 E-value=7.6e-10 Score=109.44 Aligned_cols=223 Identities=19% Similarity=0.183 Sum_probs=108.8
Q ss_pred cCcEEEeCceEEEEECCCc-EE---EeC-C-C--cEEEeceEEeecCCCccccccc-CCCCCCCCCe-------EEecCH
Q 011700 84 HGIELVLGTRVKSADVRRK-TL---VTA-T-G--ETISYKILIIATGARALKLEEF-GLSGSDAENV-------CYLRDL 147 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~-~v---~~~-~-g--~~~~~d~lviAtG~~~~~~~~~-g~~g~~~~~v-------~~~~~~ 147 (479)
.+|+++.++.+..+-.+++ .+ .+. . + ..+.++.+|||||.--..-..- +-.+...+++ ..+.++
T Consensus 147 p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~~TTNp~~~~GdGIamA~rAGa~v~Dl 226 (518)
T COG0029 147 PNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVADL 226 (518)
T ss_pred CCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCCcccccccCCCccccccHHHHHHHcCCeecCc
Confidence 6999999988777766665 22 232 2 2 4678899999999653211110 0001110110 011111
Q ss_pred HHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEE-eecCccccc------cCCHH-HHHHHHHHHHhCCc
Q 011700 148 ADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMV-FPEAHCMAR------LFTPK-IASYYEEYYKSKGV 219 (479)
Q Consensus 148 ~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv-~~~~~~l~~------~~~~~-~~~~~~~~l~~~GV 219 (479)
+ +.++.| +.+-.+ +--..-+.++++..|. .++ ....++++. ..+.+ ++..+...+++.|-
T Consensus 227 E--------FvQFHP-T~l~~~-~~~~~LiSEAVRGEGA--~L~~~~GeRFm~~~~p~~ELAPRDVVARAI~~e~~~~g~ 294 (518)
T COG0029 227 E--------FVQFHP-TALYIP-QRRAFLISEAVRGEGA--ILVNEDGERFMPDYHPRGELAPRDVVARAIDAEMKRGGA 294 (518)
T ss_pred c--------ceeecc-ceecCC-CCccceeehhhhcCcc--EEECCCCCccccCCCCccccchHHHHHHHHHHHHHhcCC
Confidence 0 001111 122222 1111122333444442 233 344566653 12333 35566777777676
Q ss_pred EEEcCCceEEEEEcCCCcEEEEEeCCCcEEec-cEEEEecCCCCChhhhhccc--ccccCcEEEcCcccCCCCCeEEEee
Q 011700 220 KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPT-DMVVVGIGIRPNTSLFEGQL--TLEKGGIKVTGRLQSSNSSVYAVGD 296 (479)
Q Consensus 220 ~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~-D~Vi~a~G~~p~~~l~~~~~--~~~~g~i~Vd~~l~t~~~~IyA~GD 296 (479)
+++++.+ .+.. .. + . +.++. ...+...|..|..+...-.. -...|+|.||.+.||+.|++||+|.
T Consensus 295 ~V~LD~s--~~~~---~~---~--~--~rFP~I~~~c~~~GiD~~r~~IPV~PaaHY~mGGI~vD~~GrTsi~gLYAiGE 362 (518)
T COG0029 295 DVFLDIS--HIPG---DF---F--E--RRFPTIYAACLKAGIDPTREPIPVVPAAHYTMGGIAVDANGRTSIPGLYAIGE 362 (518)
T ss_pred eEEEecc--CCCc---hh---h--h--hhCcHHHHHHHHcCCCcccCccCccchhheecccEEECCCCcccCcccEEeee
Confidence 5555432 1111 00 0 0 11221 11223345555444322111 1246999999999999999999999
Q ss_pred eccccccccCceee-cccHHHHHHHHHHHHHHHcCCC
Q 011700 297 VAAFPLKLLGETRR-LEHVDSARKSAKHAVAAIMEPD 332 (479)
Q Consensus 297 ~~~~~~~~~g~~~~-~~~~~~A~~~g~~aa~~i~~~~ 332 (479)
|+..- ++|..+. -.+.-.+.--|..+|++|.+..
T Consensus 363 vA~TG--lHGANRLASNSLLE~vV~g~~aA~~i~~~~ 397 (518)
T COG0029 363 VACTG--LHGANRLASNSLLECLVFGKRAAEDIAGRL 397 (518)
T ss_pred ecccc--cccchhhhhhhHHHHHHHHHHHHHHhhccc
Confidence 98742 2333321 1233455667788888888653
No 100
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.07 E-value=5.9e-10 Score=115.15 Aligned_cols=54 Identities=22% Similarity=0.252 Sum_probs=38.7
Q ss_pred ccCcEEEcCcccCCCCCeEEEeeecc-ccccccCceeec-ccHHHHHHHHHHHHHHHcC
Q 011700 274 EKGGIKVTGRLQSSNSSVYAVGDVAA-FPLKLLGETRRL-EHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 274 ~~g~i~Vd~~l~t~~~~IyA~GD~~~-~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~~ 330 (479)
..|+|.||.+.||++|++||+|+|+. .. +|..+.- .....+...|+.|++++..
T Consensus 309 t~GGi~vd~~~~t~IpGLyAaGE~a~~G~---hG~nrl~gnsl~~~~v~G~~ag~~aa~ 364 (466)
T PRK08401 309 TIGGISVDTFYRTGIKNLYAIGEAASNGF---HGANRLASNSLLECIVSGLEVARTISR 364 (466)
T ss_pred cCCCEEECCCCcccCCCEEECccccccCC---CCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence 56999999999999999999999974 22 2222111 2344566778888888764
No 101
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.06 E-value=4e-09 Score=110.86 Aligned_cols=35 Identities=31% Similarity=0.411 Sum_probs=32.1
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
++||||||+|.||++||.++++.|.+ |+|+||.+.
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae~G~~---VilleK~~~ 50 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARRAGRR---VLVVTKAAL 50 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCe---EEEEEccCC
Confidence 58999999999999999999998876 999999874
No 102
>PLN02463 lycopene beta cyclase
Probab=99.06 E-value=1.8e-08 Score=102.84 Aligned_cols=120 Identities=20% Similarity=0.276 Sum_probs=71.8
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc-ccc-cc--c-CCC-CCCCCCCccc----------
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA-LSK-GY--L-LPE-APARLPSFHT---------- 67 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~-l~~-~~--~-~~~-~~~~~~~~~~---------- 67 (479)
.+||+||||||||+++|..|++.|++ |+|+|+.+...+.+.. ... .+ + ..+ ....++....
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~---V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~ 104 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLS---VCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDL 104 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCe---EEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccc
Confidence 48999999999999999999998887 9999998643332110 000 00 0 000 0000111000
Q ss_pred --ccCCccc----CCCHhHHHHcCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCccc
Q 011700 68 --CVGANEE----RLTPKWYNEHGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALK 127 (479)
Q Consensus 68 --~~~~~~~----~~~~~~~~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~ 127 (479)
..+.-.. ..+.+.+.+.|++++. .+|.+++.+.. .|.+.+|.++++|.||.|+|.....
T Consensus 105 ~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~-~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l 171 (447)
T PLN02463 105 DRPYGRVNRKKLKSKMLERCIANGVQFHQ-AKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRCL 171 (447)
T ss_pred cCcceeEEHHHHHHHHHHHHhhcCCEEEe-eEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcCc
Confidence 0000000 1112223456899875 48888876543 4667788899999999999987643
No 103
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.05 E-value=1.3e-09 Score=113.44 Aligned_cols=54 Identities=24% Similarity=0.257 Sum_probs=39.3
Q ss_pred ccCcEEEcCcccCCCCCeEEEeeecc-ccccccCceeec-ccHHHHHHHHHHHHHHHcC
Q 011700 274 EKGGIKVTGRLQSSNSSVYAVGDVAA-FPLKLLGETRRL-EHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 274 ~~g~i~Vd~~l~t~~~~IyA~GD~~~-~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~~ 330 (479)
..|+|.||.+.||++|++||+|+|+. .. +|..+.- .....+.-.|+.|++++..
T Consensus 332 t~GGi~vd~~~~t~I~GLyAaGE~a~~g~---hGanrl~g~sl~~~~v~G~~Ag~~aa~ 387 (488)
T TIGR00551 332 TCGGISVDDHGRTTVPGLYAIGEVACTGL---HGANRLASNSLLECLVFGWSAAEDISR 387 (488)
T ss_pred ecCCEEECCCCcccCCCEEECcccccccc---CcccccchhHHHHHHHHHHHHHHHHHh
Confidence 56899999999999999999999974 22 2221111 2345677788888888764
No 104
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=99.03 E-value=3.2e-09 Score=99.30 Aligned_cols=124 Identities=19% Similarity=0.262 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcE--EeccEEEEecCCCCChhh-----------hh
Q 011700 202 FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGIRPNTSL-----------FE 268 (479)
Q Consensus 202 ~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~--i~~D~Vi~a~G~~p~~~l-----------~~ 268 (479)
+.-.+.+.+.+.+++.|.-++.+.+|.+.+. .+++++.+.+.+... +.+|..++|+|.--...+ +.
T Consensus 256 lGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~ 334 (421)
T COG3075 256 LGIRLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFD 334 (421)
T ss_pred hhhhHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchhh
Confidence 3445677888899999999999999999887 678888998888764 569999999985222111 11
Q ss_pred ccc------------------ccccCcEEEcCcccCC-----CCCeEEEeeeccccccccCceeecccHHHHHHHHHHHH
Q 011700 269 GQL------------------TLEKGGIKVTGRLQSS-----NSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAV 325 (479)
Q Consensus 269 ~~~------------------~~~~g~i~Vd~~l~t~-----~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa 325 (479)
..+ ....=++.+|+++|-+ ..|+||||.+.+..+++.-.. ....++..|..|+
T Consensus 335 ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~egc----GsGVaivta~~aa 410 (421)
T COG3075 335 LDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAEGC----GSGVAIVTALHAA 410 (421)
T ss_pred cccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHhcC----CcchHHHHHHHHH
Confidence 000 0112357788888753 579999999999877643110 0123445566666
Q ss_pred HHHcC
Q 011700 326 AAIME 330 (479)
Q Consensus 326 ~~i~~ 330 (479)
+.|+.
T Consensus 411 ~qi~~ 415 (421)
T COG3075 411 EQIAE 415 (421)
T ss_pred HHHHH
Confidence 66654
No 105
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.98 E-value=3e-09 Score=111.03 Aligned_cols=55 Identities=25% Similarity=0.308 Sum_probs=39.3
Q ss_pred ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeec-ccHHHHHHHHHHHHHHHcC
Q 011700 274 EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 274 ~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~~ 330 (479)
..|+|.||.+.||++|++||+|+|+... ++|..+.. .....+...|+.|++++..
T Consensus 331 ~~GGi~vd~~~~t~I~GLyAaGE~a~~g--~hGanrl~g~sl~~~~v~G~~Ag~~aa~ 386 (510)
T PRK08071 331 LMGGVKTNLDGETSIPGLYAIGEVACTG--VHGANRLASNSLLEGLVFGKRAAEHILT 386 (510)
T ss_pred EcCCEEECCCCcccCCCeEEcccccccc--cCCCcccchHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999997521 12221111 2455677788888888864
No 106
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.96 E-value=9.2e-10 Score=110.66 Aligned_cols=118 Identities=24% Similarity=0.376 Sum_probs=60.1
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-------CCCCcccc------cccCC--CCCCCC----CCc
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP-------YERPALSK------GYLLP--EAPARL----PSF 65 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~-------~~~~~l~~------~~~~~--~~~~~~----~~~ 65 (479)
|||+|||||||||+||..|++.|.+ |+|+|+++... -.|+.++. .+... .....+ ..|
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~---V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f 77 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGAR---VLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRF 77 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT-----EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCC---EEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcC
Confidence 7999999999999999999999987 99999997621 01122211 01100 000000 000
Q ss_pred c--------cccC------Cc------------ccCCCHhHHHHcCcEEEeCceEEEEECCCcE---EEeCCCcEEEece
Q 011700 66 H--------TCVG------AN------------EERLTPKWYNEHGIELVLGTRVKSADVRRKT---LVTATGETISYKI 116 (479)
Q Consensus 66 ~--------~~~~------~~------------~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~---v~~~~g~~~~~d~ 116 (479)
. ...+ .. ....+...+++.|++++.+++|.++..++.. |.+.++.++.+|+
T Consensus 78 ~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~ 157 (409)
T PF03486_consen 78 SPEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADA 157 (409)
T ss_dssp -HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESE
T ss_pred CHHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCE
Confidence 0 0000 00 0011223345789999999999999764433 5565778999999
Q ss_pred EEeecCCCc
Q 011700 117 LIIATGARA 125 (479)
Q Consensus 117 lviAtG~~~ 125 (479)
||||||...
T Consensus 158 vILAtGG~S 166 (409)
T PF03486_consen 158 VILATGGKS 166 (409)
T ss_dssp EEE----SS
T ss_pred EEEecCCCC
Confidence 999999764
No 107
>PRK08275 putative oxidoreductase; Provisional
Probab=98.95 E-value=1.2e-08 Score=107.78 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=30.8
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
++||||||+|.||++||+++++.+. ..+|+|+||.+.
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~-g~~VilveK~~~ 45 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNP-ALRVLLLEKANV 45 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCC-CCeEEEEeCCCC
Confidence 4799999999999999999998631 124999999875
No 108
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.92 E-value=3.6e-08 Score=99.78 Aligned_cols=116 Identities=21% Similarity=0.243 Sum_probs=68.0
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc-ccc-cc----cCCCCCCCCCCcc-cc-------cC-
Q 011700 6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA-LSK-GY----LLPEAPARLPSFH-TC-------VG- 70 (479)
Q Consensus 6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~-l~~-~~----~~~~~~~~~~~~~-~~-------~~- 70 (479)
||+||||||||+++|..|++.|++ |+|||+.+..+..... +.. .+ +.......++... .. ..
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~---v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLR---VQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGT 77 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCe---EEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCC
Confidence 799999999999999999998887 9999998643322110 000 00 0000000111100 00 00
Q ss_pred -------CcccCCCHhHHHHcCcEEEeCceEEEEECC-C--cEEEeCCCcEEEeceEEeecCCCc
Q 011700 71 -------ANEERLTPKWYNEHGIELVLGTRVKSADVR-R--KTLVTATGETISYKILIIATGARA 125 (479)
Q Consensus 71 -------~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~-~--~~v~~~~g~~~~~d~lviAtG~~~ 125 (479)
......+.+.+.+.+++++.+ .+..+..+ . ..+.+.++++++++.||.|+|..+
T Consensus 78 ~~~~i~~~~l~~~l~~~~~~~gv~~~~~-~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 78 AYGSVDSTRLHEELLQKCPEGGVLWLER-KAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred ceeEEcHHHHHHHHHHHHHhcCcEEEcc-EEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 000011222334568888754 78777655 2 345666777899999999999876
No 109
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.90 E-value=1.4e-08 Score=108.08 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=31.5
Q ss_pred cCeEEEECCchHHHHHHHHHHHc--CCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKR--GVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~--g~~~~~V~lie~~~~ 41 (479)
++||||||+|.||++||+++++. |.+ |+|||+.+.
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~---V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLK---VLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCe---EEEEECCCc
Confidence 47999999999999999999997 776 999999864
No 110
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.87 E-value=2.1e-08 Score=105.98 Aligned_cols=55 Identities=24% Similarity=0.276 Sum_probs=38.1
Q ss_pred ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeec-ccHHHHHHHHHHHHHHHcC
Q 011700 274 EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 274 ~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~~ 330 (479)
..|+|.+|.+.||++|++||+|+|+... ++|..+.- .....+...|+.|++++..
T Consensus 356 ~~GGi~~d~~~~t~i~GLyAaGe~a~~G--~hGanrl~g~sl~~~~v~G~~ag~~aa~ 411 (580)
T TIGR01176 356 TMGGIETDINCETRIKGLFAVGECASVG--LHGANRLGSNSLAELVVFGRRAGEAAAE 411 (580)
T ss_pred cCCCeeECcCcccccCCeEeeecccccC--cCCCccccchhHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999997421 12222111 2345566777777777654
No 111
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.86 E-value=2.5e-08 Score=110.84 Aligned_cols=35 Identities=26% Similarity=0.463 Sum_probs=31.9
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
++||||||+|.||++||+++++.|.+ |+|+||.+.
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~---V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGAN---VLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCe---EEEEecccc
Confidence 47999999999999999999998877 999999864
No 112
>PRK06847 hypothetical protein; Provisional
Probab=98.86 E-value=1.5e-08 Score=102.02 Aligned_cols=124 Identities=22% Similarity=0.333 Sum_probs=76.0
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcc--c---------ccc----------------
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPAL--S---------KGY---------------- 53 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l--~---------~~~---------------- 53 (479)
|.+.+||+||||||+|+++|..|++.|++ |+|+|+.+...-....+ . -++
T Consensus 1 m~~~~~V~IVGaG~aGl~~A~~L~~~g~~---v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~ 77 (375)
T PRK06847 1 MAAVKKVLIVGGGIGGLSAAIALRRAGIA---VDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDL 77 (375)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEE
Confidence 77889999999999999999999999987 89999886421100000 0 000
Q ss_pred cCCCCC--CCCC--Cc-----cc---ccCCcccCCCHhHHHHcCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEe
Q 011700 54 LLPEAP--ARLP--SF-----HT---CVGANEERLTPKWYNEHGIELVLGTRVKSADVRRK--TLVTATGETISYKILII 119 (479)
Q Consensus 54 ~~~~~~--~~~~--~~-----~~---~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lvi 119 (479)
...... ...+ .+ .. .........+.+.+.+.+++++.++++..++.+.. .+.+.+|+++.+|.||.
T Consensus 78 ~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~ 157 (375)
T PRK06847 78 FDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVG 157 (375)
T ss_pred ECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEE
Confidence 000000 0000 00 00 00000001122333457899999999998876544 45567888899999999
Q ss_pred ecCCCccc
Q 011700 120 ATGARALK 127 (479)
Q Consensus 120 AtG~~~~~ 127 (479)
|+|..+..
T Consensus 158 AdG~~s~~ 165 (375)
T PRK06847 158 ADGLYSKV 165 (375)
T ss_pred CcCCCcch
Confidence 99987644
No 113
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.86 E-value=7.4e-08 Score=101.82 Aligned_cols=35 Identities=29% Similarity=0.451 Sum_probs=31.9
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
++||||||+|.||++||+++++.|.+ |+|+||.+.
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~G~~---V~lveK~~~ 39 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASAGFK---VAVISKVFP 39 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHCCCc---EEEEEccCC
Confidence 58999999999999999999998887 999999854
No 114
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.85 E-value=4.5e-08 Score=103.75 Aligned_cols=70 Identities=19% Similarity=0.246 Sum_probs=43.7
Q ss_pred CCCCChhhhhccc--ccccCcEEEcCcccCCCCCeEEEeeeccccccccCceeec-ccHHHHHHHHHHHHHHHcC
Q 011700 259 GIRPNTSLFEGQL--TLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 259 G~~p~~~l~~~~~--~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~~ 330 (479)
|..|....++... ....|+|.||.+.||++|++||+|+|+... .+|..+.- .....|...|++|++++..
T Consensus 340 G~d~~~~~i~v~p~~h~t~GGi~vd~~~~t~i~GLyAaGe~~~~g--~hGanrlggnsl~~a~v~Gr~Ag~~aa~ 412 (582)
T PRK09231 340 GVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVG--LHGANRLGSNSLAELVVFGRVAGEQAAE 412 (582)
T ss_pred CCCCCCCeeeeeceeeeeCCCEEECCCCccccCCEEecccccccc--cCCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 5555544333221 125799999999999999999999997521 12222111 2344566677777777654
No 115
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.84 E-value=5.3e-08 Score=103.32 Aligned_cols=33 Identities=39% Similarity=0.410 Sum_probs=30.5
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
||||||+|.||++||..+++.|.+ |+|||+.+.
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~---V~lleK~~~ 33 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLN---TAVISKVYP 33 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCc---EEEEeccCC
Confidence 799999999999999999998887 999999864
No 116
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.84 E-value=5.9e-09 Score=110.55 Aligned_cols=103 Identities=16% Similarity=0.194 Sum_probs=78.8
Q ss_pred CCCCEEEECCCh--HHHHHHHHHhhCCCeEEEEeecCcccccc-------------CCHHHHHHHHHHHHhCCcEEEcCC
Q 011700 161 SGGNAVVIGGGY--IGMECAASLVINKINVTMVFPEAHCMARL-------------FTPKIASYYEEYYKSKGVKFVKGT 225 (479)
Q Consensus 161 ~~~~vvVIGgG~--~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-------------~~~~~~~~~~~~l~~~GV~i~~~~ 225 (479)
.++++.|+|+++ ++.|++..+...+.+++++.+.++++... -..++.+.+.+.+++.|++++.++
T Consensus 156 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~~~ 235 (574)
T PRK12842 156 PLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILTGT 235 (574)
T ss_pred CcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEeCC
Confidence 468899999998 89999999999999888776655554321 124567778888889999999999
Q ss_pred ceEEEEEcCCCcEEEEEeCC--Cc-EEecc-EEEEecCCCCCh
Q 011700 226 VLSSFDVDSNGKVVAVNLRD--GN-RLPTD-MVVVGIGIRPNT 264 (479)
Q Consensus 226 ~v~~i~~~~~g~v~~v~~~~--g~-~i~~D-~Vi~a~G~~p~~ 264 (479)
.++++.. +++++..+...+ ++ .+.++ .||+|+|..++.
T Consensus 236 ~v~~l~~-~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n 277 (574)
T PRK12842 236 PARELLT-EGGRVVGARVIDAGGERRITARRGVVLACGGFSHD 277 (574)
T ss_pred EEEEEEe-eCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccch
Confidence 9999987 467777776643 33 47786 799999977644
No 117
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.84 E-value=3.4e-08 Score=104.13 Aligned_cols=54 Identities=19% Similarity=0.224 Sum_probs=38.0
Q ss_pred ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeec-ccHHHHHHHHHHHHHHHcC
Q 011700 274 EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 274 ~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~~ 330 (479)
..|+|.||.+.||++|++||+|+|++... |..+.- .....|...|++|+++++.
T Consensus 347 t~GGi~vd~~~~t~IpGLyAaGE~~gg~h---G~~rlgG~sl~~a~v~Gr~Ag~~aa~ 401 (543)
T PRK06263 347 FMGGIRINEDCETNIPGLFACGEVAGGVH---GANRLGGNALADTQVFGAIAGKSAAK 401 (543)
T ss_pred ecCCEEECCCCcccCCCeEeccccccCCC---CCCccchhhhhhhHHHHHHHHHHHHH
Confidence 56899999999999999999999975432 211110 2344566777887777754
No 118
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.83 E-value=1.7e-07 Score=93.65 Aligned_cols=60 Identities=20% Similarity=0.382 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcE-EeccEEEEecCCCCCh
Q 011700 204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR-LPTDMVVVGIGIRPNT 264 (479)
Q Consensus 204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~-i~~D~Vi~a~G~~p~~ 264 (479)
-++...+.+.+.++|++++++++|..|+..++| +..+.+.+|++ ++|+.||.|.|.....
T Consensus 153 ~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl~Ad~ 213 (429)
T COG0579 153 GELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGLYADP 213 (429)
T ss_pred HHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCchhHHH
Confidence 345667777888889999999999999986665 55677888876 9999999999976543
No 119
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.82 E-value=2.8e-08 Score=101.66 Aligned_cols=126 Identities=29% Similarity=0.428 Sum_probs=74.3
Q ss_pred CCC-cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc---cc-cc--ccCCC-----CCCCC---CC-
Q 011700 1 MGR-AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA---LS-KG--YLLPE-----APARL---PS- 64 (479)
Q Consensus 1 M~~-~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~---l~-~~--~~~~~-----~~~~~---~~- 64 (479)
|++ +|||+||||||||++||..|++.|++ |+|+|+.+.......+ +. .. .+.+. ..... ..
T Consensus 1 m~~~~~DViIVGaGpAG~~aA~~La~~G~~---V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~ 77 (428)
T PRK10157 1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQ---VLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKL 77 (428)
T ss_pred CCcccCcEEEECcCHHHHHHHHHHHhCCCe---EEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeE
Confidence 553 59999999999999999999999997 9999998653221100 00 00 00000 00000 00
Q ss_pred -c---------ccccC---Cc-------ccCC----CHhHHHHcCcEEEeCceEEEEECCCcEE--EeCCCcEEEeceEE
Q 011700 65 -F---------HTCVG---AN-------EERL----TPKWYNEHGIELVLGTRVKSADVRRKTL--VTATGETISYKILI 118 (479)
Q Consensus 65 -~---------~~~~~---~~-------~~~~----~~~~~~~~gv~~~~~~~v~~i~~~~~~v--~~~~g~~~~~d~lv 118 (479)
+ ..... .. .... +.+..++.|++++.+++|.++..++..+ ...++.++.+|.||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI 157 (428)
T PRK10157 78 AFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVI 157 (428)
T ss_pred EEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEE
Confidence 0 00000 00 0001 1222345799999999999886544433 33466789999999
Q ss_pred eecCCCccccc
Q 011700 119 IATGARALKLE 129 (479)
Q Consensus 119 iAtG~~~~~~~ 129 (479)
+|+|.......
T Consensus 158 ~A~G~~s~l~~ 168 (428)
T PRK10157 158 LADGVNSILAE 168 (428)
T ss_pred EEeCCCHHHHH
Confidence 99998765443
No 120
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.82 E-value=2.1e-08 Score=105.35 Aligned_cols=56 Identities=21% Similarity=0.283 Sum_probs=39.5
Q ss_pred ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeec-ccHHHHHHHHHHHHHHHcCC
Q 011700 274 EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIMEP 331 (479)
Q Consensus 274 ~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~~~ 331 (479)
..|+|.||.+.||++|++||+|+|+... .+|..+.- .....|...|+.|++++...
T Consensus 352 t~GGi~vd~~~~t~I~GLyAaGE~a~~g--~hGanrl~gnsl~~~~vfG~~Ag~~aa~~ 408 (536)
T PRK09077 352 TCGGVMVDLHGRTDLDGLYAIGEVSYTG--LHGANRMASNSLLECLVYGRSAAEDILSR 408 (536)
T ss_pred ecCCeeECCCCccccCCEEecccccccc--cCCCccchhhhHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999997421 12222111 23456777888888887643
No 121
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.81 E-value=2.4e-08 Score=105.35 Aligned_cols=107 Identities=16% Similarity=0.173 Sum_probs=79.5
Q ss_pred CCCCEEEECCChHHHHHHHH-------HhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEc
Q 011700 161 SGGNAVVIGGGYIGMECAAS-------LVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVD 233 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~-------l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~ 233 (479)
.|+.++++|++++++|++.. +.+++.+|+++...+..+.. +...+...+.+.+++.||++++++.++++..
T Consensus 159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~- 236 (557)
T PRK07843 159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLG-MGQALAAGLRIGLQRAGVPVLLNTPLTDLYV- 236 (557)
T ss_pred ccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCccc-CcHHHHHHHHHHHHcCCCEEEeCCEEEEEEE-
Confidence 46788999999999998865 66677777776554443332 5777888888999999999999999999987
Q ss_pred CCCcEEEEEeC-CCc--EEecc-EEEEecC-CCCChhhhhc
Q 011700 234 SNGKVVAVNLR-DGN--RLPTD-MVVVGIG-IRPNTSLFEG 269 (479)
Q Consensus 234 ~~g~v~~v~~~-~g~--~i~~D-~Vi~a~G-~~p~~~l~~~ 269 (479)
+++++..+... +++ .+.++ .||+|+| +.+|.++++.
T Consensus 237 ~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~~ 277 (557)
T PRK07843 237 EDGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRAK 277 (557)
T ss_pred eCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHHH
Confidence 46777776553 443 47785 5888665 7777766543
No 122
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.80 E-value=3.3e-08 Score=103.27 Aligned_cols=55 Identities=31% Similarity=0.316 Sum_probs=37.9
Q ss_pred ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeec-ccHHHHHHHHHHHHHHHcC
Q 011700 274 EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 274 ~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~~ 330 (479)
..|+|.||.+.||++|++||+|+|+..- .+|..+.- .....+...|+.|++++..
T Consensus 340 t~GGi~vd~~~~t~I~GLyAaGE~a~~G--~hGanrl~gnsl~~~~v~G~~ag~~aa~ 395 (513)
T PRK07512 340 HMGGIAVDADGRSSLPGLWAAGEVASTG--LHGANRLASNSLLEAVVFAARAAEDIAG 395 (513)
T ss_pred EcCCEEECCCCccccCCEEecccccccC--CCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999997321 12221111 2344566678888887754
No 123
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.79 E-value=1.9e-07 Score=94.58 Aligned_cols=58 Identities=16% Similarity=0.269 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700 203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 263 (479)
Q Consensus 203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~ 263 (479)
+..+.+.+.+.+++.|++++.++++.+++.. ++.+ .+.+.++ ++.+|.||+|+|....
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~-~~~~-~V~~~~g-~i~ad~vV~A~G~~s~ 205 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEH-ANGV-VVRTTQG-EYEARTLINCAGLMSD 205 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEec-CCeE-EEEECCC-EEEeCEEEECCCcchH
Confidence 4677888888899999999999999999863 3333 5666666 7999999999998754
No 124
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.79 E-value=3.3e-08 Score=104.89 Aligned_cols=35 Identities=29% Similarity=0.447 Sum_probs=31.4
Q ss_pred cCeEEEECCchHHHHHHHHHHHcC---CCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRG---VPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g---~~~~~V~lie~~~~ 41 (479)
++||||||+|.||++||.++++.| .+ |+|+||.+.
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~---V~lleK~~~ 42 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLS---VAVVSKTQP 42 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCc---EEEEEcccC
Confidence 589999999999999999999987 55 999999864
No 125
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.79 E-value=2.6e-08 Score=104.68 Aligned_cols=35 Identities=29% Similarity=0.499 Sum_probs=30.6
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
.++||||||+|.||++||+++++ |.+ |+||||.+.
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~~-G~~---V~lieK~~~ 42 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLPS-HLR---VGLITKDTL 42 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhhc-CCC---EEEEEccCC
Confidence 35899999999999999999964 765 999999865
No 126
>PRK06834 hypothetical protein; Provisional
Probab=98.78 E-value=5e-08 Score=101.33 Aligned_cols=125 Identities=24% Similarity=0.372 Sum_probs=76.6
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---cccc---------c----ccCCCCCCCCCCcc
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERP---ALSK---------G----YLLPEAPARLPSFH 66 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~---~l~~---------~----~~~~~~~~~~~~~~ 66 (479)
+++||+||||||+|+++|..|++.|.+ |+|||+.+...+..+ .++. + +...........+.
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~---v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~ 78 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVD---VAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFA 78 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceee
Confidence 469999999999999999999999988 999999864321111 1100 0 00000000000000
Q ss_pred ---cc---------cC-----CcccCCCHhHHHHcCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCccc
Q 011700 67 ---TC---------VG-----ANEERLTPKWYNEHGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALK 127 (479)
Q Consensus 67 ---~~---------~~-----~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~ 127 (479)
.. .+ ......+.+.+++.+++++.+++++++..++. .+.+.+++++++|+||.|.|.....
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 79 ATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred eEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCc
Confidence 00 00 00001122334567999999999999876654 3445667789999999999988755
Q ss_pred ccc
Q 011700 128 LEE 130 (479)
Q Consensus 128 ~~~ 130 (479)
...
T Consensus 159 R~~ 161 (488)
T PRK06834 159 RKA 161 (488)
T ss_pred Hhh
Confidence 443
No 127
>PLN02815 L-aspartate oxidase
Probab=98.76 E-value=2.4e-07 Score=97.97 Aligned_cols=54 Identities=26% Similarity=0.306 Sum_probs=37.8
Q ss_pred ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeec-ccHHHHHHHHHHHHHHHc
Q 011700 274 EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIM 329 (479)
Q Consensus 274 ~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~ 329 (479)
..|+|.+|.+.||++|++||+|+|+... ++|..+.- .....+...|+.|++++.
T Consensus 376 t~GGi~vD~~~~t~IpGLyAaGE~a~~G--~hGanrl~gnsl~e~lvfGr~Ag~~aa 430 (594)
T PLN02815 376 MCGGVRTGLQGETNVQGLYAAGEVACTG--LHGANRLASNSLLEALVFARRAVQPSI 430 (594)
T ss_pred eCCCeeECCCCceecCCEEecccccccC--CCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999997421 12222111 234566667777777765
No 128
>PRK10015 oxidoreductase; Provisional
Probab=98.75 E-value=7e-08 Score=98.65 Aligned_cols=124 Identities=19% Similarity=0.299 Sum_probs=72.9
Q ss_pred CCC-cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc---ccc---cccCCC----C-CC-CCCC--c
Q 011700 1 MGR-AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA---LSK---GYLLPE----A-PA-RLPS--F 65 (479)
Q Consensus 1 M~~-~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~---l~~---~~~~~~----~-~~-~~~~--~ 65 (479)
|+. +|||+||||||||++||+.|++.|++ |+|||+.+.......+ ++. ..+.+. . .. .... +
T Consensus 1 m~~~~~DViIVGgGpAG~~aA~~LA~~G~~---VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~ 77 (429)
T PRK10015 1 MSDDKFDAIVVGAGVAGSVAALVMARAGLD---VLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKI 77 (429)
T ss_pred CCccccCEEEECcCHHHHHHHHHHHhCCCe---EEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeE
Confidence 553 58999999999999999999999987 9999998753221110 000 000000 0 00 0000 0
Q ss_pred -----------cccc---------CCc-ccCC----CHhHHHHcCcEEEeCceEEEEECCCcEEE--eCCCcEEEeceEE
Q 011700 66 -----------HTCV---------GAN-EERL----TPKWYNEHGIELVLGTRVKSADVRRKTLV--TATGETISYKILI 118 (479)
Q Consensus 66 -----------~~~~---------~~~-~~~~----~~~~~~~~gv~~~~~~~v~~i~~~~~~v~--~~~g~~~~~d~lv 118 (479)
.... +-. .... +.+..++.|++++.+++|..+..++..+. ..++.++.+|.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI 157 (429)
T PRK10015 78 SFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVI 157 (429)
T ss_pred EEEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEE
Confidence 0000 000 0011 12223467999999999988876544332 2345679999999
Q ss_pred eecCCCccc
Q 011700 119 IATGARALK 127 (479)
Q Consensus 119 iAtG~~~~~ 127 (479)
+|+|.....
T Consensus 158 ~AdG~~s~v 166 (429)
T PRK10015 158 LADGVNSML 166 (429)
T ss_pred EccCcchhh
Confidence 999976543
No 129
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.75 E-value=8.1e-08 Score=101.94 Aligned_cols=37 Identities=30% Similarity=0.386 Sum_probs=32.9
Q ss_pred CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
|++.||||||+|.||++||+++++.|.+ |+|||+.+.
T Consensus 1 ~~~~DVlVVG~G~AGl~AAi~Aa~~G~~---V~lieK~~~ 37 (589)
T PRK08641 1 MAKGKVIVVGGGLAGLMATIKAAEAGVH---VDLFSLVPV 37 (589)
T ss_pred CCCccEEEECchHHHHHHHHHHHHcCCc---EEEEEccCC
Confidence 3468999999999999999999998887 899998764
No 130
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.74 E-value=4.4e-08 Score=94.90 Aligned_cols=120 Identities=25% Similarity=0.393 Sum_probs=70.2
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC--ccccc---cc----------------C-CCC-CCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERP--ALSKG---YL----------------L-PEA-PAR 61 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~--~l~~~---~~----------------~-~~~-~~~ 61 (479)
|||+|||||++|+++|..|++.|.+ |+|+|+.+....... .+... .+ . ... ...
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~---v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLR---VLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVE 77 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEE
Confidence 6999999999999999999999887 999999865321000 00000 00 0 000 000
Q ss_pred CCC---ccc-ccCCcccCCCHhHHHHcCcEEEeCceEEEEECCCcE--EEeCC-CcEEEeceEEeecCCCccc
Q 011700 62 LPS---FHT-CVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKT--LVTAT-GETISYKILIIATGARALK 127 (479)
Q Consensus 62 ~~~---~~~-~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~--v~~~~-g~~~~~d~lviAtG~~~~~ 127 (479)
.+. ... .........+.+.+.+.|++++.++++..+..+... +.+.+ +.++++|++|+|+|.....
T Consensus 78 ~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~~ 150 (295)
T TIGR02032 78 IPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSIV 150 (295)
T ss_pred eccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcchHH
Confidence 000 000 000000111223345678999999999887655443 33333 4679999999999986543
No 131
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.73 E-value=1.5e-07 Score=91.50 Aligned_cols=99 Identities=14% Similarity=0.245 Sum_probs=79.5
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeecCc---c--------ccc----cCCHHHHHHHHHHHHhCCcEEEcCCceE
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH---C--------MAR----LFTPKIASYYEEYYKSKGVKFVKGTVLS 228 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~---~--------l~~----~~~~~~~~~~~~~l~~~GV~i~~~~~v~ 228 (479)
+++|||+|+.|+++|..|.+.|.+|+++++.+. + ++. ..+.++.+.+.+.+++.|+++++ .++.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~ 80 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI 80 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence 589999999999999999999999999997641 1 121 12367888888889999999998 7889
Q ss_pred EEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700 229 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 229 ~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~ 265 (479)
+++.. +. ...+.+.+++++.+|.+++|+|.+|+..
T Consensus 81 ~v~~~-~~-~~~v~~~~~~~~~~d~liiAtG~~~~~~ 115 (300)
T TIGR01292 81 KVDLS-DR-PFKVKTGDGKEYTAKAVIIATGASARKL 115 (300)
T ss_pred EEEec-CC-eeEEEeCCCCEEEeCEEEECCCCCcccC
Confidence 98873 22 2356677788999999999999988754
No 132
>PRK06184 hypothetical protein; Provisional
Probab=98.73 E-value=6.3e-08 Score=101.32 Aligned_cols=124 Identities=23% Similarity=0.292 Sum_probs=73.6
Q ss_pred CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-CCCC-ccc---------ccc----------------c
Q 011700 2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP-YERP-ALS---------KGY----------------L 54 (479)
Q Consensus 2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~-~~~~-~l~---------~~~----------------~ 54 (479)
|+++||+||||||+|+++|..|+++|++ |+|||+.+... ..+. .+. -++ .
T Consensus 1 ~~~~dVlIVGaGpaGl~~A~~La~~Gi~---v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~ 77 (502)
T PRK06184 1 YTTTDVLIVGAGPTGLTLAIELARRGVS---FRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIY 77 (502)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEE
Confidence 3469999999999999999999999998 99999986421 0000 000 000 0
Q ss_pred CCCCC-CC--C-------C--Cccc--ccC-CcccCCCHhHHHHcCcEEEeCceEEEEECCCcE--EEe---CCCcEEEe
Q 011700 55 LPEAP-AR--L-------P--SFHT--CVG-ANEERLTPKWYNEHGIELVLGTRVKSADVRRKT--LVT---ATGETISY 114 (479)
Q Consensus 55 ~~~~~-~~--~-------~--~~~~--~~~-~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~--v~~---~~g~~~~~ 114 (479)
..... .. + + .+.. ... ......+.+.+.+.++++..++++++++.+... +.+ .+++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a 157 (502)
T PRK06184 78 RDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRA 157 (502)
T ss_pred eCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEe
Confidence 00000 00 0 0 0000 000 000011223345668999999999998765443 333 45578999
Q ss_pred ceEEeecCCCcccc
Q 011700 115 KILIIATGARALKL 128 (479)
Q Consensus 115 d~lviAtG~~~~~~ 128 (479)
|+||.|+|.+...-
T Consensus 158 ~~vVgADG~~S~vR 171 (502)
T PRK06184 158 RYLVGADGGRSFVR 171 (502)
T ss_pred CEEEECCCCchHHH
Confidence 99999999886443
No 133
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.72 E-value=4.5e-08 Score=99.16 Aligned_cols=124 Identities=22% Similarity=0.272 Sum_probs=75.0
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc---ccc----cccCCCCC---CCCCC--cccc---
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA---LSK----GYLLPEAP---ARLPS--FHTC--- 68 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~---l~~----~~~~~~~~---~~~~~--~~~~--- 68 (479)
+|||+||||||||++||+.|++.|++ |+|+|+.....+...+ ++. .+...... ..+.. +...
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~---VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~ 79 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLD---VLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEK 79 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCe---EEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCc
Confidence 49999999999999999999999976 9999998764443222 110 00000000 00000 0000
Q ss_pred --cCC----c---ccCCCHhHH----HHcCcEEEeCceEEEEECCCcEE--Ee-CCCcEEEeceEEeecCCCcccccc
Q 011700 69 --VGA----N---EERLTPKWY----NEHGIELVLGTRVKSADVRRKTL--VT-ATGETISYKILIIATGARALKLEE 130 (479)
Q Consensus 69 --~~~----~---~~~~~~~~~----~~~gv~~~~~~~v~~i~~~~~~v--~~-~~g~~~~~d~lviAtG~~~~~~~~ 130 (479)
... . ....+.+|+ .+.|++++.++.+..+..++..+ .+ .++.+++++.+|.|+|........
T Consensus 80 ~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~~~ 157 (396)
T COG0644 80 VAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALARK 157 (396)
T ss_pred eEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHHHHH
Confidence 000 0 011223333 46799999999998887655332 22 333689999999999987654433
No 134
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.72 E-value=8.6e-08 Score=95.38 Aligned_cols=60 Identities=27% Similarity=0.423 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700 203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 264 (479)
Q Consensus 203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~ 264 (479)
+..+.+.+.+.+++.|++++.+++|++++. +++.+..|.+.+|+ +.+|.||+|+|.....
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~-~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDV-DGGRVTGVRTSDGE-IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEE-ETTEEEEEEETTEE-EEECEEEE--GGGHHH
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhh-cccccccccccccc-cccceeEeccccccee
Confidence 567888888889999999999999999998 46667679999997 9999999999975443
No 135
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.71 E-value=4e-08 Score=101.03 Aligned_cols=99 Identities=19% Similarity=0.275 Sum_probs=74.0
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||+.|+.+|..+++.|.+ |+++++.+... +.+. ........+.+++
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~l-------------------~~~~----~~~~~~~~~~l~~ 210 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSK---VTVLDAASTIL-------------------PREE----PSVAALAKQYMEE 210 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCccC-------------------CCCC----HHHHHHHHHHHHH
Confidence 46899999999999999999998876 99999885310 0000 0011234566788
Q ss_pred cCcEEEeCceEEEEECCCcEEE-eCCCcEEEeceEEeecCCCcccc
Q 011700 84 HGIELVLGTRVKSADVRRKTLV-TATGETISYKILIIATGARALKL 128 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~-~~~g~~~~~d~lviAtG~~~~~~ 128 (479)
.|++++.++.+.+++.++..+. ..+++++.+|.+|+|+|.+|...
T Consensus 211 ~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~ 256 (438)
T PRK07251 211 DGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTE 256 (438)
T ss_pred cCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCcc
Confidence 9999999999999987654443 34567899999999999998753
No 136
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.71 E-value=5.8e-08 Score=91.95 Aligned_cols=117 Identities=18% Similarity=0.163 Sum_probs=68.2
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCC-----------CCCC------Ccc
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAP-----------ARLP------SFH 66 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~-----------~~~~------~~~ 66 (479)
++||+||||||||++||++|++.|++ |+|+|+.+..... ....+.+.+... ..++ ++.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~---V~liEk~~~~Ggg--~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~ 99 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLK---VAVFERKLSFGGG--MWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLY 99 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCe---EEEEecCCCCCCc--cccCccccccccchHHHHHHHHHCCCCceeecCcce
Confidence 58999999999999999999999987 9999998643210 000111111000 0000 000
Q ss_pred cccCCcccCCCHhHHHHcCcEEEeCceEEEEECCCc-EEE---eC-----------CCcEEEeceEEeecCCCc
Q 011700 67 TCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRK-TLV---TA-----------TGETISYKILIIATGARA 125 (479)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~-~v~---~~-----------~g~~~~~d~lviAtG~~~ 125 (479)
..........+.+...+.|++++.++.|..+..++. .+. .. +..++.++.+|+|||...
T Consensus 100 ~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 100 VADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred eccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 000000011122334567999999998888764332 221 11 224789999999999764
No 137
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.70 E-value=1.6e-07 Score=99.37 Aligned_cols=33 Identities=30% Similarity=0.561 Sum_probs=29.3
Q ss_pred eEEEECCchHHHHHHHHHH----HcCCCCCcEEEEcCCCC
Q 011700 6 VYVIVGGGVAAGYAALEFT----KRGVPPGELCIISEEPV 41 (479)
Q Consensus 6 dvvIIGgG~aGl~aA~~l~----~~g~~~~~V~lie~~~~ 41 (479)
||||||+|.||++||++++ +.|.+ |+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~---VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLK---IVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCe---EEEEEccCC
Confidence 7999999999999999998 55766 999999864
No 138
>PRK07190 hypothetical protein; Provisional
Probab=98.69 E-value=9.5e-08 Score=99.14 Aligned_cols=126 Identities=21% Similarity=0.230 Sum_probs=76.0
Q ss_pred CCC-cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-CCCCc-cc---------cccc---CC---------
Q 011700 1 MGR-AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP-YERPA-LS---------KGYL---LP--------- 56 (479)
Q Consensus 1 M~~-~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~-~~~~~-l~---------~~~~---~~--------- 56 (479)
|+. .+||+||||||+|+++|..|+++|.+ |+|||+.+... ..+.. +. .+++ ..
T Consensus 1 m~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~---V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~ 77 (487)
T PRK07190 1 MSTQVTDVVIIGAGPVGLMCAYLGQLCGLN---TVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSS 77 (487)
T ss_pred CCCccceEEEECCCHHHHHHHHHHHHcCCC---EEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEE
Confidence 543 48999999999999999999999987 99999987421 11100 00 0000 00
Q ss_pred ----CCC-C-------CCCC----cccccCC-cccCCCHhHHHHcCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceE
Q 011700 57 ----EAP-A-------RLPS----FHTCVGA-NEERLTPKWYNEHGIELVLGTRVKSADVRRK--TLVTATGETISYKIL 117 (479)
Q Consensus 57 ----~~~-~-------~~~~----~~~~~~~-~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~l 117 (479)
... . ..+. +...... .....+.+.+++.|+++..+++|+++..+.. .+.+.+++++++++|
T Consensus 78 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~v 157 (487)
T PRK07190 78 VWANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYV 157 (487)
T ss_pred EecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEE
Confidence 000 0 0000 0000000 0001122334567999999999999876544 345567778999999
Q ss_pred EeecCCCccccc
Q 011700 118 IIATGARALKLE 129 (479)
Q Consensus 118 viAtG~~~~~~~ 129 (479)
|.|+|.+...-.
T Consensus 158 VgADG~~S~vR~ 169 (487)
T PRK07190 158 IGADGSRSFVRN 169 (487)
T ss_pred EECCCCCHHHHH
Confidence 999998864433
No 139
>PRK09126 hypothetical protein; Provisional
Probab=98.66 E-value=1.6e-07 Score=95.11 Aligned_cols=126 Identities=25% Similarity=0.327 Sum_probs=74.8
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc-------cc---------cccc---CCCCCCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA-------LS---------KGYL---LPEAPAR 61 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~-------l~---------~~~~---~~~~~~~ 61 (479)
|| ++||+||||||+|+++|..|+++|++ |+|+|+.+......+. ++ -++. .......
T Consensus 1 ~~-~~dviIvGgG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~ 76 (392)
T PRK09126 1 MM-HSDIVVVGAGPAGLSFARSLAGSGLK---VTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISP 76 (392)
T ss_pred CC-cccEEEECcCHHHHHHHHHHHhCCCc---EEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCc
Confidence 66 59999999999999999999999998 9999998642110000 00 0000 0000000
Q ss_pred CCCc-----------cccc---CCc-cc-----CCCHh-----HHHHcCcEEEeCceEEEEECCCc--EEEeCCCcEEEe
Q 011700 62 LPSF-----------HTCV---GAN-EE-----RLTPK-----WYNEHGIELVLGTRVKSADVRRK--TLVTATGETISY 114 (479)
Q Consensus 62 ~~~~-----------~~~~---~~~-~~-----~~~~~-----~~~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~ 114 (479)
.... .... ... .. ..+.+ ..+..|++++.++++.+++.+.. .+.+.+|+++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a 156 (392)
T PRK09126 77 LRDAKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTA 156 (392)
T ss_pred cceEEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEe
Confidence 0000 0000 000 00 00111 11235899999999998875544 455677889999
Q ss_pred ceEEeecCCCcccccc
Q 011700 115 KILIIATGARALKLEE 130 (479)
Q Consensus 115 d~lviAtG~~~~~~~~ 130 (479)
|.||.|.|........
T Consensus 157 ~~vI~AdG~~S~vr~~ 172 (392)
T PRK09126 157 RLLVAADSRFSATRRQ 172 (392)
T ss_pred CEEEEeCCCCchhhHh
Confidence 9999999987654443
No 140
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.66 E-value=9.4e-08 Score=96.86 Aligned_cols=124 Identities=19% Similarity=0.242 Sum_probs=74.9
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC--Cc-----cc---------ccccCC---CCCCCCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYER--PA-----LS---------KGYLLP---EAPARLP 63 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~--~~-----l~---------~~~~~~---~~~~~~~ 63 (479)
..+||+||||||+|+++|..|+++|++ |+|||+.+...+.. +. +. -+++.. .....+.
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~---v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~ 81 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLS---VALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYR 81 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCE---EEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCccc
Confidence 468999999999999999999999987 99999986432210 00 10 000000 0000000
Q ss_pred Ccc-----------cc---cCCc----------ccCCCHhHHHHcCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceE
Q 011700 64 SFH-----------TC---VGAN----------EERLTPKWYNEHGIELVLGTRVKSADVRRK--TLVTATGETISYKIL 117 (479)
Q Consensus 64 ~~~-----------~~---~~~~----------~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~l 117 (479)
.+. .. .+.. ....+.+.+++.|+++..+++|+++..+.. ++++.+++++.+|.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~v 161 (392)
T PRK08773 82 RMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALA 161 (392)
T ss_pred EEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEE
Confidence 000 00 0000 000112224457999999999998876544 455567788999999
Q ss_pred EeecCCCccccc
Q 011700 118 IIATGARALKLE 129 (479)
Q Consensus 118 viAtG~~~~~~~ 129 (479)
|.|+|.......
T Consensus 162 V~AdG~~S~vr~ 173 (392)
T PRK08773 162 IAADGAASTLRE 173 (392)
T ss_pred EEecCCCchHHH
Confidence 999998765433
No 141
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.65 E-value=1.9e-07 Score=97.43 Aligned_cols=37 Identities=32% Similarity=0.513 Sum_probs=33.5
Q ss_pred CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
..++||||||||.|||.||.++++.|.+ |+|+||.+.
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~---V~l~~K~~~ 40 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLK---VALLSKAPP 40 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCc---EEEEEcccc
Confidence 3568999999999999999999999977 899999875
No 142
>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....
Probab=98.64 E-value=1.3e-08 Score=83.32 Aligned_cols=83 Identities=20% Similarity=0.160 Sum_probs=62.1
Q ss_pred EeecCcceEeecCCCceEEE-----------Ecc-------CCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHH
Q 011700 345 SRVFTLSWQFYGDNVGEVVH-----------YGN-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKAT 403 (479)
Q Consensus 345 ~~~~~~~~~~~G~~~~~~~~-----------~~~-------~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i 403 (479)
..+++++++.+|+++.++.. +.+ .+...|.++.+ ++++|+|+|++|++++|+ +.++.+|
T Consensus 4 ~vft~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~IlGa~~vg~~a~e~I~~~~~ai 83 (110)
T PF02852_consen 4 VVFTDPEIASVGLTEEEARKQGIDYEVVTVPFKSNDRARYYPETEGFVKLIFDKKTGRILGAQIVGPNASELINELALAI 83 (110)
T ss_dssp EEESSSEEEEEES-HHHHHHHTSGEEEEEEEEGGEHHHHHTTTTEEEEEEEEETTTTBEEEEEEEETTHHHHHHHHHHHH
T ss_pred EEECCCceEEEccCHHHHHhccCceeeeeecccccchhcccCCcceeeEEEEEeeccceeeeeeecCchHHHHHHHHHHH
Confidence 56788999999998764311 111 11244556544 589999999999999998 6689999
Q ss_pred HcCCCcCcHHHHhhcCCCcccccC
Q 011700 404 RLQPVVEDLAELETQGLGFALAVS 427 (479)
Q Consensus 404 ~~~~~~~dl~~~~~~~~~~a~~~~ 427 (479)
+.++|++++.+....||++++.+.
T Consensus 84 ~~~~t~~~l~~~~~~~Pt~se~~~ 107 (110)
T PF02852_consen 84 QNGLTVEDLADDIFYHPTFSEAIQ 107 (110)
T ss_dssp HTTSBHHHHHTSBSSSTSTGHHHH
T ss_pred HcCCCHHHHhCCeeeCCChhHHHH
Confidence 999999999998888888876543
No 143
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.61 E-value=1.8e-07 Score=97.33 Aligned_cols=121 Identities=21% Similarity=0.342 Sum_probs=70.1
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc---c---cccccCC--C----------CCC--
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA---L---SKGYLLP--E----------APA-- 60 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~---l---~~~~~~~--~----------~~~-- 60 (479)
|+.+|||||||||+||+.||..+++.|.+ |+|+|+........+| . .++.+.. + ...
T Consensus 1 ~~~~yDVIVVGGGpAG~eAA~~aAR~G~k---V~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~gi 77 (618)
T PRK05192 1 MPEEYDVIVVGGGHAGCEAALAAARMGAK---TLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGI 77 (618)
T ss_pred CCccceEEEECchHHHHHHHHHHHHcCCc---EEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccC
Confidence 56779999999999999999999999998 8999987422211111 1 0100000 0 000
Q ss_pred CCCCcccccCC-------c-ccCC----CHhHHHH-cCcEEEeCceEEEEECCCcE---EEeCCCcEEEeceEEeecCCC
Q 011700 61 RLPSFHTCVGA-------N-EERL----TPKWYNE-HGIELVLGTRVKSADVRRKT---LVTATGETISYKILIIATGAR 124 (479)
Q Consensus 61 ~~~~~~~~~~~-------~-~~~~----~~~~~~~-~gv~~~~~~~v~~i~~~~~~---v~~~~g~~~~~d~lviAtG~~ 124 (479)
...-.....+. . .... +.+.+.+ .+++++.+ .|..+..++.. |.+.+|..+.++.+|+|||..
T Consensus 78 q~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~-~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 78 QFRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQG-EVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred ceeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence 00000000000 0 0001 1122233 37888765 78877655543 556788899999999999975
Q ss_pred c
Q 011700 125 A 125 (479)
Q Consensus 125 ~ 125 (479)
.
T Consensus 157 L 157 (618)
T PRK05192 157 L 157 (618)
T ss_pred h
Confidence 3
No 144
>PRK08244 hypothetical protein; Provisional
Probab=98.61 E-value=1.8e-07 Score=97.67 Aligned_cols=121 Identities=21% Similarity=0.361 Sum_probs=71.5
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-CCCC-cc---------cccc---------------cCC-C
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP-YERP-AL---------SKGY---------------LLP-E 57 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~-~~~~-~l---------~~~~---------------~~~-~ 57 (479)
+||+||||||+|+++|..|++.|.+ |+|||+.+... ..+. .+ .-++ +.. .
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~---v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~ 79 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVK---TCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLD 79 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccc
Confidence 8999999999999999999999998 99999986521 1110 00 0000 000 0
Q ss_pred CCCCCCCcc------cccC-CcccCCCHhHHHHcCcEEEeCceEEEEECCCcEE--EeC--CC-cEEEeceEEeecCCCc
Q 011700 58 APARLPSFH------TCVG-ANEERLTPKWYNEHGIELVLGTRVKSADVRRKTL--VTA--TG-ETISYKILIIATGARA 125 (479)
Q Consensus 58 ~~~~~~~~~------~~~~-~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v--~~~--~g-~~~~~d~lviAtG~~~ 125 (479)
....+.... .... ......+.+.+++.+++++.+++++++..++..+ .+. ++ +++++|+||.|.|.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S 159 (493)
T PRK08244 80 TRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGS 159 (493)
T ss_pred ccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCCh
Confidence 000000000 0000 0001112233456799999999999887655433 332 45 4799999999999876
Q ss_pred ccc
Q 011700 126 LKL 128 (479)
Q Consensus 126 ~~~ 128 (479)
..-
T Consensus 160 ~vR 162 (493)
T PRK08244 160 IVR 162 (493)
T ss_pred HHH
Confidence 443
No 145
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.60 E-value=2.1e-07 Score=94.65 Aligned_cols=123 Identities=23% Similarity=0.310 Sum_probs=73.5
Q ss_pred CeEEEECCchHHHHHHHHHHHcC--CCCCcEEEEcCCCCCC-CCCCc---cc---------cccc---CCC---------
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRG--VPPGELCIISEEPVAP-YERPA---LS---------KGYL---LPE--------- 57 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g--~~~~~V~lie~~~~~~-~~~~~---l~---------~~~~---~~~--------- 57 (479)
+||+||||||+|+++|..|+++| ++ |+|+|+.+... ...+. ++ -++. ...
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~---v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 78 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLP---VTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVI 78 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCE---EEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEE
Confidence 89999999999999999999985 65 99999986421 11000 00 0000 000
Q ss_pred ---CC---CCCCCcccc----cCCc---------ccCCCHhHHHHcCcEEEeCceEEEEECCCcE--EEeCCCcEEEece
Q 011700 58 ---AP---ARLPSFHTC----VGAN---------EERLTPKWYNEHGIELVLGTRVKSADVRRKT--LVTATGETISYKI 116 (479)
Q Consensus 58 ---~~---~~~~~~~~~----~~~~---------~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~--v~~~~g~~~~~d~ 116 (479)
.. .....+... .+.. ....+.+.+.+.|++++.+++|++++.+... +.+.++.++.+|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~ 158 (403)
T PRK07333 79 TDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARL 158 (403)
T ss_pred EeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCE
Confidence 00 000000000 0000 0011223344569999999999998765544 4556788899999
Q ss_pred EEeecCCCcccccc
Q 011700 117 LIIATGARALKLEE 130 (479)
Q Consensus 117 lviAtG~~~~~~~~ 130 (479)
||.|+|........
T Consensus 159 vI~AdG~~S~vr~~ 172 (403)
T PRK07333 159 LVAADGARSKLREL 172 (403)
T ss_pred EEEcCCCChHHHHH
Confidence 99999987654443
No 146
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.60 E-value=2.8e-07 Score=86.97 Aligned_cols=116 Identities=19% Similarity=0.198 Sum_probs=68.3
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCC-----------CCCCCC------cc
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEA-----------PARLPS------FH 66 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~------~~ 66 (479)
++||+||||||||++||+.|+++|++ |+|+|+++..... ....+.+.+.. ...++. +.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~---V~vlEk~~~~Ggg--~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~ 95 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLK---VCVLERSLAFGGG--SWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYV 95 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCcc--ccCCCcceecccccchHHHHHHHCCCCeeeccCceE
Confidence 58999999999999999999999987 9999999753211 00001110000 000110 00
Q ss_pred cccCCcccCCCHhHHHHcCcEEEeCceEEEEECCCc--EE---EeC-----------CCcEEEeceEEeecCCC
Q 011700 67 TCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRK--TL---VTA-----------TGETISYKILIIATGAR 124 (479)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~--~v---~~~-----------~g~~~~~d~lviAtG~~ 124 (479)
..........+.+...+.|++++.++.+..+..++. .+ .+. +..++.++.+|.|||..
T Consensus 96 ~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 96 VADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred EeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence 000000001122233567999999999988775433 22 221 12478999999999965
No 147
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.60 E-value=6.4e-07 Score=95.30 Aligned_cols=31 Identities=29% Similarity=0.455 Sum_probs=28.9
Q ss_pred EEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 7 YVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 7 vvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
|||||+|.||++||+++++.|.+ |+|+|+.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~---VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYH---VKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCC---EEEEEecC
Confidence 69999999999999999998887 99999987
No 148
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.60 E-value=2.4e-07 Score=98.41 Aligned_cols=101 Identities=13% Similarity=0.115 Sum_probs=69.2
Q ss_pred CCCEEEECCChHH-HHHHHHHhhCCCeEEEEeecCccccc-------------cCCHHHHHHHHHHHHhCCcEEEcCCce
Q 011700 162 GGNAVVIGGGYIG-MECAASLVINKINVTMVFPEAHCMAR-------------LFTPKIASYYEEYYKSKGVKFVKGTVL 227 (479)
Q Consensus 162 ~~~vvVIGgG~~g-~E~A~~l~~~g~~Vtlv~~~~~~l~~-------------~~~~~~~~~~~~~l~~~GV~i~~~~~v 227 (479)
+.++.++|+++++ .+++..+...+..+.+..+..+++.. .....+.+.+.+.+++.|++++.++.+
T Consensus 161 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v 240 (581)
T PRK06134 161 LRETSFMGMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSAEDLGVRIWESAPA 240 (581)
T ss_pred cccccccccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHhCCCEEEcCCEE
Confidence 4567778888776 67777777666655544332221111 123456778888889999999999999
Q ss_pred EEEEEcCCCcEEEEEeC--CCc-EEec-cEEEEecCCCCC
Q 011700 228 SSFDVDSNGKVVAVNLR--DGN-RLPT-DMVVVGIGIRPN 263 (479)
Q Consensus 228 ~~i~~~~~g~v~~v~~~--~g~-~i~~-D~Vi~a~G~~p~ 263 (479)
+++.. +++++..|... ++. ++.+ +.||+|+|--.+
T Consensus 241 ~~l~~-~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 241 RELLR-EDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred EEEEE-eCCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 99886 36777666553 333 5788 999999986554
No 149
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.60 E-value=3.7e-07 Score=94.60 Aligned_cols=99 Identities=21% Similarity=0.301 Sum_probs=73.3
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... |.+. ........+.+++
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~l-------------------~~~~----~~~~~~~~~~l~~ 223 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSK---VTVIEMLDRIL-------------------PGED----AEVSKVVAKALKK 223 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCCCCC-------------------CCCC----HHHHHHHHHHHHH
Confidence 36899999999999999999998876 99999885310 0000 0011234566778
Q ss_pred cCcEEEeCceEEEEECCCcEE--EeCCC--cEEEeceEEeecCCCcccc
Q 011700 84 HGIELVLGTRVKSADVRRKTL--VTATG--ETISYKILIIATGARALKL 128 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v--~~~~g--~~~~~d~lviAtG~~~~~~ 128 (479)
.|++++.++.+.+++.++..+ ...++ +++++|.||+|+|..|...
T Consensus 224 ~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 224 KGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred cCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence 899999999999887665444 33455 4799999999999998654
No 150
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.57 E-value=2.3e-07 Score=94.49 Aligned_cols=125 Identities=20% Similarity=0.255 Sum_probs=73.7
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC-CCC-C----CC-Ccccc---------cccCC---CCCCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP-VAP-Y----ER-PALSK---------GYLLP---EAPAR 61 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~-~~~-~----~~-~~l~~---------~~~~~---~~~~~ 61 (479)
||..+||+||||||+|+++|..|++.|++ |+|+|+.+ ... . .+ ..++. ++... .....
T Consensus 1 ~m~~~dV~IvGaG~~Gl~~A~~L~~~G~~---v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~ 77 (405)
T PRK08850 1 MMQSVDVAIIGGGMVGLALAAALKESDLR---IAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAP 77 (405)
T ss_pred CCCcCCEEEECccHHHHHHHHHHHhCCCE---EEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCc
Confidence 77789999999999999999999999987 99999862 110 0 01 00100 00000 00000
Q ss_pred CCCccc-----------cc--------CCcc-cCCCHhH----HHH-cCcEEEeCceEEEEECCC--cEEEeCCCcEEEe
Q 011700 62 LPSFHT-----------CV--------GANE-ERLTPKW----YNE-HGIELVLGTRVKSADVRR--KTLVTATGETISY 114 (479)
Q Consensus 62 ~~~~~~-----------~~--------~~~~-~~~~~~~----~~~-~gv~~~~~~~v~~i~~~~--~~v~~~~g~~~~~ 114 (479)
...+.. .. +... ...+... +.+ .++++..++++.+++.++ ..+.+.+|+++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a 157 (405)
T PRK08850 78 YIAMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTA 157 (405)
T ss_pred ccEEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEe
Confidence 000000 00 0000 0001111 122 379999999999886544 3566678889999
Q ss_pred ceEEeecCCCcccc
Q 011700 115 KILIIATGARALKL 128 (479)
Q Consensus 115 d~lviAtG~~~~~~ 128 (479)
|.||.|.|.....-
T Consensus 158 ~lvIgADG~~S~vR 171 (405)
T PRK08850 158 KLVVGADGANSWLR 171 (405)
T ss_pred CEEEEeCCCCChhH
Confidence 99999999875443
No 151
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.56 E-value=1.3e-06 Score=86.00 Aligned_cols=87 Identities=17% Similarity=0.237 Sum_probs=67.8
Q ss_pred HHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecC
Q 011700 180 SLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 259 (479)
Q Consensus 180 ~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G 259 (479)
.+...+...-++.-..+.+....-+++.+.+.+.+++.|++++++++|..++. +++.+..+.+++|.++++|.||+|+|
T Consensus 149 e~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~-~~~~~~~v~~~~g~~i~~~~vvlA~G 227 (486)
T COG2509 149 EFRAAGAGEEILPIYQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEI-EDNEVLGVKLTKGEEIEADYVVLAPG 227 (486)
T ss_pred HHHHhCCCceeeeccccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEe-cCCceEEEEccCCcEEecCEEEEccC
Confidence 34444555555543333344335678899999999999999999999999998 56667789999999999999999999
Q ss_pred CCCChhhh
Q 011700 260 IRPNTSLF 267 (479)
Q Consensus 260 ~~p~~~l~ 267 (479)
+....++.
T Consensus 228 rsg~dw~~ 235 (486)
T COG2509 228 RSGRDWFE 235 (486)
T ss_pred cchHHHHH
Confidence 99887643
No 152
>PRK08013 oxidoreductase; Provisional
Probab=98.55 E-value=2.2e-07 Score=94.36 Aligned_cols=123 Identities=15% Similarity=0.225 Sum_probs=72.9
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-------CC-ccc---------ccccCC---CCCCCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYE-------RP-ALS---------KGYLLP---EAPARL 62 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~-------~~-~l~---------~~~~~~---~~~~~~ 62 (479)
+++||+||||||+|+++|..|++.|++ |+|+|+.+...-. +. .+. -+++.. ......
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G~~---v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~ 78 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSGLR---VAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCY 78 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCCE---EEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccc
Confidence 458999999999999999999999987 9999998642110 00 000 011000 000000
Q ss_pred CCcc-----------cc---cCCcc------cCCCHhH----HHH-cCcEEEeCceEEEEECCCc--EEEeCCCcEEEec
Q 011700 63 PSFH-----------TC---VGANE------ERLTPKW----YNE-HGIELVLGTRVKSADVRRK--TLVTATGETISYK 115 (479)
Q Consensus 63 ~~~~-----------~~---~~~~~------~~~~~~~----~~~-~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d 115 (479)
..+. .. .+... ...+.+. +.+ .+++++.++++.+++.+.. ++.+.+|+++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~ 158 (400)
T PRK08013 79 HGMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTAR 158 (400)
T ss_pred cEEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEee
Confidence 0000 00 00000 0001111 223 3799999999998865543 4556788899999
Q ss_pred eEEeecCCCcccc
Q 011700 116 ILIIATGARALKL 128 (479)
Q Consensus 116 ~lviAtG~~~~~~ 128 (479)
.||-|.|.....-
T Consensus 159 lvVgADG~~S~vR 171 (400)
T PRK08013 159 LVVGADGANSWLR 171 (400)
T ss_pred EEEEeCCCCcHHH
Confidence 9999999875443
No 153
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.54 E-value=2.8e-07 Score=93.09 Aligned_cols=124 Identities=23% Similarity=0.355 Sum_probs=73.1
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC--C------ccc---------ccccCC---CCCCCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYER--P------ALS---------KGYLLP---EAPARL 62 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~--~------~l~---------~~~~~~---~~~~~~ 62 (479)
+.+||+||||||+|+++|..|++.|++ |+|+|+.+...+.. + .++ -+++.. .....+
T Consensus 2 ~~~dv~IvGgG~aGl~~A~~L~~~G~~---v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~ 78 (384)
T PRK08849 2 NKYDIAVVGGGMVGAATALGFAKQGRS---VAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPY 78 (384)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCc---EEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCcc
Confidence 358999999999999999999999987 99999875222111 0 110 000000 000000
Q ss_pred CC------------ccc-ccC-Cc----cc-CCCHhH----HHH-cCcEEEeCceEEEEECCCc--EEEeCCCcEEEece
Q 011700 63 PS------------FHT-CVG-AN----EE-RLTPKW----YNE-HGIELVLGTRVKSADVRRK--TLVTATGETISYKI 116 (479)
Q Consensus 63 ~~------------~~~-~~~-~~----~~-~~~~~~----~~~-~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~ 116 (479)
.. +.. ... .. .. ..+... +.. .+++++.++++.+++.+.. ++++.+|.++++|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~l 158 (384)
T PRK08849 79 KRLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKW 158 (384)
T ss_pred ceEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeE
Confidence 00 000 000 00 00 001111 122 3799999999998875443 56778888999999
Q ss_pred EEeecCCCccccc
Q 011700 117 LIIATGARALKLE 129 (479)
Q Consensus 117 lviAtG~~~~~~~ 129 (479)
||.|+|.....-.
T Consensus 159 vIgADG~~S~vR~ 171 (384)
T PRK08849 159 VIGADGANSQVRQ 171 (384)
T ss_pred EEEecCCCchhHH
Confidence 9999998765433
No 154
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.53 E-value=3.8e-07 Score=92.26 Aligned_cols=37 Identities=24% Similarity=0.460 Sum_probs=33.4
Q ss_pred CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
|+.+||+||||||+|+++|..|++.|.+ |+|||+.+.
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~---v~liE~~~~ 41 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGAS---VALVAPEPP 41 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCe---EEEEeCCCC
Confidence 4568999999999999999999999887 999999864
No 155
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.52 E-value=5.3e-06 Score=78.62 Aligned_cols=171 Identities=15% Similarity=0.151 Sum_probs=107.4
Q ss_pred HhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc------------------------------------
Q 011700 157 MKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------ 200 (479)
Q Consensus 157 l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------ 200 (479)
+.+...-.|+|||+|+.|+-+|..|++.|.+|.++++.+.+-..
T Consensus 20 ~~~~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~ 99 (257)
T PRK04176 20 LLDYLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLY 99 (257)
T ss_pred HHHhccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcce
Confidence 33334568999999999999999999999999999987543110
Q ss_pred -cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC-----------CCcEEeccEEEEecCCCCChh-hh
Q 011700 201 -LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-----------DGNRLPTDMVVVGIGIRPNTS-LF 267 (479)
Q Consensus 201 -~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~-----------~g~~i~~D~Vi~a~G~~p~~~-l~ 267 (479)
....++...+.+..++.|++++.++.+.++..++++++..+... +..++.++.||.|+|...... .+
T Consensus 100 ~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l 179 (257)
T PRK04176 100 VADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVL 179 (257)
T ss_pred eccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHH
Confidence 00134455566677788999999999999876444466555442 224799999999999765432 11
Q ss_pred -hc----cccc-ccCc--------EEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCC
Q 011700 268 -EG----QLTL-EKGG--------IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP 331 (479)
Q Consensus 268 -~~----~~~~-~~g~--------i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~ 331 (479)
+. .... .... ..|+..-+ -+|++|++|=.+.... |.++-=+...-=...|+.||+.|+..
T Consensus 180 ~~~~~~~~~~~~g~~~~~~~~~e~~v~~~t~~-~~~g~~~~gm~~~~~~---~~~rmg~~fg~m~~sg~~~a~~~~~~ 253 (257)
T PRK04176 180 ARKGPELGIEVPGEKSMWAERGEKLVVENTGE-VYPGLYVAGMAANAVH---GLPRMGPIFGGMLLSGKKVAELILEK 253 (257)
T ss_pred HHHcCCcccccCCccccccCchHHHHHhcCCe-EcCCEEEeehhhhhhc---CCCccCchhHhHHHhHHHHHHHHHHH
Confidence 11 0111 0111 22222222 3799999998776432 22222133332245677787777643
No 156
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.51 E-value=4e-06 Score=87.01 Aligned_cols=64 Identities=16% Similarity=0.322 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC--CC--cEEeccEEEEecC-CCCChhhhh
Q 011700 204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--DG--NRLPTDMVVVGIG-IRPNTSLFE 268 (479)
Q Consensus 204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~--~g--~~i~~D~Vi~a~G-~~p~~~l~~ 268 (479)
..+.+.+.+.+++.|++++.+++++++.. +++++..+... ++ ..+.++.||+|+| +..+.++++
T Consensus 131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~-~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~~ 199 (466)
T PRK08274 131 KALVNALYRSAERLGVEIRYDAPVTALEL-DDGRFVGARAGSAAGGAERIRAKAVVLAAGGFESNREWLR 199 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEe-cCCeEEEEEEEccCCceEEEECCEEEECCCCCCCCHHHHH
Confidence 56677788888899999999999999987 46777777653 33 3688999999998 455655554
No 157
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.50 E-value=3.8e-07 Score=92.53 Aligned_cols=124 Identities=18% Similarity=0.187 Sum_probs=73.6
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC--ccc---------ccccCC--CCCCCCCCccc
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERP--ALS---------KGYLLP--EAPARLPSFHT 67 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~--~l~---------~~~~~~--~~~~~~~~~~~ 67 (479)
|+.+.||+|||||++|+++|..|++.|++ |+|+|+.+...-... .+. -++... ........+..
T Consensus 1 ~~~~~~V~IvGaGiaGl~~A~~L~~~g~~---v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~ 77 (396)
T PRK08163 1 MTKVTPVLIVGGGIGGLAAALALARQGIK---VKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTM 77 (396)
T ss_pred CCCCCeEEEECCcHHHHHHHHHHHhCCCc---EEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEE
Confidence 77789999999999999999999999987 999999864211000 000 000000 00000000000
Q ss_pred --------------------ccCCccc--------CCCHhHHHHc-CcEEEeCceEEEEECCCc--EEEeCCCcEEEece
Q 011700 68 --------------------CVGANEE--------RLTPKWYNEH-GIELVLGTRVKSADVRRK--TLVTATGETISYKI 116 (479)
Q Consensus 68 --------------------~~~~~~~--------~~~~~~~~~~-gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~ 116 (479)
..+.... ..+.+.+.+. +++++.++++.+++.++. .+.+.+|+++.+|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~ 157 (396)
T PRK08163 78 MDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDA 157 (396)
T ss_pred EeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCE
Confidence 0000000 0011112233 489999999999876544 34556778899999
Q ss_pred EEeecCCCccc
Q 011700 117 LIIATGARALK 127 (479)
Q Consensus 117 lviAtG~~~~~ 127 (479)
||.|.|.....
T Consensus 158 vV~AdG~~S~~ 168 (396)
T PRK08163 158 LIGCDGVKSVV 168 (396)
T ss_pred EEECCCcChHH
Confidence 99999987543
No 158
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.50 E-value=3.7e-06 Score=85.72 Aligned_cols=61 Identities=18% Similarity=0.268 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700 203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 263 (479)
Q Consensus 203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~ 263 (479)
..++.+.+.+.++..|.++++++.|.+|+.++++++..|.+.+|+++.|+.||......|.
T Consensus 231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence 4578888888889999999999999999875567788899999999999999998877765
No 159
>PRK07045 putative monooxygenase; Reviewed
Probab=98.50 E-value=4.1e-07 Score=92.01 Aligned_cols=123 Identities=18% Similarity=0.225 Sum_probs=72.7
Q ss_pred CC-CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-CCc-cc---------ccccC---CCCCCCCCC-
Q 011700 1 MG-RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYE-RPA-LS---------KGYLL---PEAPARLPS- 64 (479)
Q Consensus 1 M~-~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~-~~~-l~---------~~~~~---~~~~~~~~~- 64 (479)
|+ +++||+||||||+|+++|..|++.|++ |+|+|+.+..... +.. +. -+++. .........
T Consensus 1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~ 77 (388)
T PRK07045 1 MKNNPVDVLINGSGIAGVALAHLLGARGHS---VTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAM 77 (388)
T ss_pred CCCceeEEEEECCcHHHHHHHHHHHhcCCc---EEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccce
Confidence 44 578999999999999999999999987 9999988753110 000 00 00000 000000000
Q ss_pred -----------cccc----cCCcc---cCCCHhHH----H-HcCcEEEeCceEEEEECCC-c---EEEeCCCcEEEeceE
Q 011700 65 -----------FHTC----VGANE---ERLTPKWY----N-EHGIELVLGTRVKSADVRR-K---TLVTATGETISYKIL 117 (479)
Q Consensus 65 -----------~~~~----~~~~~---~~~~~~~~----~-~~gv~~~~~~~v~~i~~~~-~---~v~~~~g~~~~~d~l 117 (479)
+... .+... ...+.+.+ . ..+++++.+++++.+..+. . .++..+|+++.+|.|
T Consensus 78 ~~~~~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~v 157 (388)
T PRK07045 78 RLYHDKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVL 157 (388)
T ss_pred EEecCCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEE
Confidence 0000 00000 00011111 1 2479999999999887542 2 466678889999999
Q ss_pred EeecCCCcc
Q 011700 118 IIATGARAL 126 (479)
Q Consensus 118 viAtG~~~~ 126 (479)
|.|.|....
T Consensus 158 IgADG~~S~ 166 (388)
T PRK07045 158 VGADGARSM 166 (388)
T ss_pred EECCCCChH
Confidence 999998753
No 160
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.49 E-value=1.1e-06 Score=90.69 Aligned_cols=90 Identities=18% Similarity=0.163 Sum_probs=59.1
Q ss_pred hHHHHHHHHHhhCCCeEEEEeecCcc--ccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEc-CC--CcEEEEEeC-C
Q 011700 172 YIGMECAASLVINKINVTMVFPEAHC--MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVD-SN--GKVVAVNLR-D 245 (479)
Q Consensus 172 ~~g~E~A~~l~~~g~~Vtlv~~~~~~--l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~-~~--g~v~~v~~~-~ 245 (479)
.++.|+...|.++=.++.-+.....+ ....-.+.+...+.++++++||+|+++++|+++..+ ++ ++++.+... +
T Consensus 192 hSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~ 271 (576)
T PRK13977 192 HSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRN 271 (576)
T ss_pred hHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeC
Confidence 57888888887652221111111110 111123677888999999999999999999999874 23 567777774 3
Q ss_pred Cc-----EEeccEEEEecCCC
Q 011700 246 GN-----RLPTDMVVVGIGIR 261 (479)
Q Consensus 246 g~-----~i~~D~Vi~a~G~~ 261 (479)
|+ ..+.|.||+++|.-
T Consensus 272 ~~~~~I~l~~~DlVivTnGs~ 292 (576)
T PRK13977 272 GKEETIDLTEDDLVFVTNGSI 292 (576)
T ss_pred CceeEEEecCCCEEEEeCCcC
Confidence 32 35689999999954
No 161
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.49 E-value=5.1e-06 Score=84.89 Aligned_cols=57 Identities=23% Similarity=0.335 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700 204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 262 (479)
Q Consensus 204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p 262 (479)
..+.+.+.+.+++.|++++.+++|++++.+ ++.+..+.+.++ ++.+|.||+|+|...
T Consensus 201 ~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 201 QLFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 456677778888999999999999999873 445545666554 799999999999754
No 162
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.48 E-value=7.5e-07 Score=90.23 Aligned_cols=122 Identities=23% Similarity=0.320 Sum_probs=71.7
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC--------ccc---------ccccCCC-----CC-
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERP--------ALS---------KGYLLPE-----AP- 59 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~--------~l~---------~~~~~~~-----~~- 59 (479)
+.+||+||||||+|+++|..|++.|++ |+|+|+.+...+... .++ -+++..- ..
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~---V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~ 80 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFS---VAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPY 80 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCE---EEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCccc
Confidence 358999999999999999999999987 999999763222100 000 0000000 00
Q ss_pred CC-----CCC--cccc---cC-Cc----c-cCCC----HhHHHHc-CcEEEeCceEEEEECCCc--EEEeCCCcEEEece
Q 011700 60 AR-----LPS--FHTC---VG-AN----E-ERLT----PKWYNEH-GIELVLGTRVKSADVRRK--TLVTATGETISYKI 116 (479)
Q Consensus 60 ~~-----~~~--~~~~---~~-~~----~-~~~~----~~~~~~~-gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~ 116 (479)
.. ... .... .. .. . ...+ .+.+.+. +++++.++++..+..+.. .+.+.+++++++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~ 160 (391)
T PRK08020 81 RRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKL 160 (391)
T ss_pred ceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCE
Confidence 00 000 0000 00 00 0 0001 1112334 899999999998865543 45566778899999
Q ss_pred EEeecCCCccc
Q 011700 117 LIIATGARALK 127 (479)
Q Consensus 117 lviAtG~~~~~ 127 (479)
||.|.|.....
T Consensus 161 vI~AdG~~S~v 171 (391)
T PRK08020 161 VIGADGANSQV 171 (391)
T ss_pred EEEeCCCCchh
Confidence 99999987644
No 163
>PRK06185 hypothetical protein; Provisional
Probab=98.47 E-value=5.6e-07 Score=91.64 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=32.8
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
.++||+|||||++|+++|..|++.|++ |+|+|+.+.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~---v~liE~~~~ 40 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVD---VTVLEKHAD 40 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCc
Confidence 468999999999999999999999987 999999753
No 164
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.47 E-value=5.9e-07 Score=91.75 Aligned_cols=36 Identities=25% Similarity=0.499 Sum_probs=33.1
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
.++||+||||||||+++|..|++.|++ |+|+|+.+.
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~---v~v~E~~~~ 52 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLR---IALIEAQPA 52 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCE---EEEEecCCc
Confidence 468999999999999999999999987 999999875
No 165
>PLN02697 lycopene epsilon cyclase
Probab=98.46 E-value=5.7e-07 Score=93.47 Aligned_cols=116 Identities=17% Similarity=0.260 Sum_probs=67.4
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc-cccccc----CCC-CCCCCCCccccc--------
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA-LSKGYL----LPE-APARLPSFHTCV-------- 69 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~-l~~~~~----~~~-~~~~~~~~~~~~-------- 69 (479)
.+||+||||||||+++|..|++.|++ |++||+.. ++..+. +....+ ..+ ....++......
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~---V~LIe~~~--p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~ 182 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLN---VGLIGPDL--PFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMI 182 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCc---EEEecCcc--cCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeec
Confidence 48999999999999999999999987 89999863 222111 100000 000 000011000000
Q ss_pred CCc----cc----CCCHhHHHHcCcEEEeCceEEEEECCCc--E-EEeCCCcEEEeceEEeecCCCc
Q 011700 70 GAN----EE----RLTPKWYNEHGIELVLGTRVKSADVRRK--T-LVTATGETISYKILIIATGARA 125 (479)
Q Consensus 70 ~~~----~~----~~~~~~~~~~gv~~~~~~~v~~i~~~~~--~-v~~~~g~~~~~d~lviAtG~~~ 125 (479)
+.. .. ..+.+.+.+.|+++. +++|..+..+.. . +...++.++.++.||.|+|...
T Consensus 183 ~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~-~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 183 GRAYGRVSRTLLHEELLRRCVESGVSYL-SSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred cCcccEEcHHHHHHHHHHHHHhcCCEEE-eeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 000 00 111122345689984 558888875433 2 3456778899999999999876
No 166
>PRK07236 hypothetical protein; Provisional
Probab=98.46 E-value=1.1e-06 Score=88.97 Aligned_cols=121 Identities=19% Similarity=0.198 Sum_probs=71.0
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-c--ccc---------cccCCCCCCCCC--Cc--c
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERP-A--LSK---------GYLLPEAPARLP--SF--H 66 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~-~--l~~---------~~~~~~~~~~~~--~~--~ 66 (479)
..++|+|||||++|+++|..|++.|++ |+|+|+.+...-.+. . +.. ++. .......+ .. .
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~-~~~~~~~~~~~~~~~ 80 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWD---VDVFERSPTELDGRGAGIVLQPELLRALAEAGVA-LPADIGVPSRERIYL 80 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCC-cccccccCccceEEE
Confidence 358999999999999999999999987 999999864211110 0 000 000 00000000 00 0
Q ss_pred cccCCcc--------c---CCCHhHHH-H-cCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCccc
Q 011700 67 TCVGANE--------E---RLTPKWYN-E-HGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALK 127 (479)
Q Consensus 67 ~~~~~~~--------~---~~~~~~~~-~-~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~ 127 (479)
...+... . ..+.+.+. . .+++++.+++|+++..+.. ++.+.+|+++.+|.||.|-|.....
T Consensus 81 ~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 81 DRDGRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTV 156 (386)
T ss_pred eCCCCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchH
Confidence 0000000 0 00111121 1 2467888999999976554 3566788899999999999977543
No 167
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.46 E-value=6.8e-07 Score=90.98 Aligned_cols=122 Identities=19% Similarity=0.291 Sum_probs=72.2
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CC-----CCCc---cc---------ccccCC---CCCCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PY-----ERPA---LS---------KGYLLP---EAPARL 62 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~-----~~~~---l~---------~~~~~~---~~~~~~ 62 (479)
+||+||||||+|+++|..|++.|++ |+|+|+.+.. ++ ..+. ++ -+++.. ......
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~---v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~ 79 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLE---VLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPY 79 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCE---EEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccc
Confidence 8999999999999999999999987 9999998621 00 0000 00 000000 000000
Q ss_pred CCcc-----------ccc---CCcc----------cCCCHhHHHHcCcEEEeCceEEEEECCCc--EEEeCCCcEEEece
Q 011700 63 PSFH-----------TCV---GANE----------ERLTPKWYNEHGIELVLGTRVKSADVRRK--TLVTATGETISYKI 116 (479)
Q Consensus 63 ~~~~-----------~~~---~~~~----------~~~~~~~~~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~ 116 (479)
..+. ... .... ...+.+.+++.+++++.++++.+++.+.. .+.+.+|+++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~ 159 (405)
T PRK05714 80 SEMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPL 159 (405)
T ss_pred eeEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCE
Confidence 0000 000 0000 00111223456899999999998875543 45667888899999
Q ss_pred EEeecCCCccccc
Q 011700 117 LIIATGARALKLE 129 (479)
Q Consensus 117 lviAtG~~~~~~~ 129 (479)
||.|.|.....-.
T Consensus 160 vVgAdG~~S~vR~ 172 (405)
T PRK05714 160 VVAADGANSAVRR 172 (405)
T ss_pred EEEecCCCchhHH
Confidence 9999998754433
No 168
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.44 E-value=1.4e-06 Score=87.85 Aligned_cols=98 Identities=19% Similarity=0.287 Sum_probs=66.4
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc---------------------------------------------
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--------------------------------------------- 198 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l--------------------------------------------- 198 (479)
+|+|||+|+.|+-+|..+++.|.+|+++++.+++.
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d 81 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED 81 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence 58999999999999999999999999999883221
Q ss_pred ---------------------ccc-CCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEE
Q 011700 199 ---------------------ARL-FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV 256 (479)
Q Consensus 199 ---------------------~~~-~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~ 256 (479)
|.. -..++.+.+.+.+++.||+++++++|.+++. +++.+..|.++++.++.+|.||+
T Consensus 82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~-~~~~~f~v~~~~~~~~~a~~vIL 160 (409)
T PF03486_consen 82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEK-KEDGVFGVKTKNGGEYEADAVIL 160 (409)
T ss_dssp HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEE-ETTEEEEEEETTTEEEEESEEEE
T ss_pred HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeee-cCCceeEeeccCcccccCCEEEE
Confidence 110 0134566777888899999999999999987 45555678887788999999999
Q ss_pred ecCCCC
Q 011700 257 GIGIRP 262 (479)
Q Consensus 257 a~G~~p 262 (479)
|+|-..
T Consensus 161 AtGG~S 166 (409)
T PF03486_consen 161 ATGGKS 166 (409)
T ss_dssp ----SS
T ss_pred ecCCCC
Confidence 999654
No 169
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.43 E-value=1.8e-05 Score=74.79 Aligned_cols=167 Identities=17% Similarity=0.187 Sum_probs=105.9
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc----------ccc---------------------------CC
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM----------ARL---------------------------FT 203 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l----------~~~---------------------------~~ 203 (479)
..-.++|||+|+.|+-+|..|++.|.+|.++++.+.+- +.. ..
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~ 99 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADS 99 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeH
Confidence 45689999999999999999999999999999875431 000 11
Q ss_pred HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCC-cEEEEEeC-----------CCcEEeccEEEEecCCCCCh-hhhhcc
Q 011700 204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG-KVVAVNLR-----------DGNRLPTDMVVVGIGIRPNT-SLFEGQ 270 (479)
Q Consensus 204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g-~v~~v~~~-----------~g~~i~~D~Vi~a~G~~p~~-~l~~~~ 270 (479)
.++.+.+.+...+.|++++.++.+.++..++++ ++..+... +..+++++.||.|+|..... .++...
T Consensus 100 ~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~ 179 (254)
T TIGR00292 100 AEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKK 179 (254)
T ss_pred HHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHH
Confidence 244556666777889999999999998864442 56666653 22478999999999976543 333211
Q ss_pred --ccc--c----cCcEEEcCc-----ccC--CCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700 271 --LTL--E----KGGIKVTGR-----LQS--SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 271 --~~~--~----~g~i~Vd~~-----l~t--~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~ 330 (479)
+.. . .+...++.- -.| -+|++|++|=.+.... |.++-=+....=...|+.||+.|+.
T Consensus 180 ~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~~---~~~rmgp~fg~m~~sg~~~a~~~~~ 251 (254)
T TIGR00292 180 IVLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAVH---GLPRMGPIFGGMLLSGKHVAEQILE 251 (254)
T ss_pred cCcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhhc---CCCCcCchHHHHHHhhHHHHHHHHH
Confidence 111 0 111222210 023 4899999998776322 2222213333234567888877654
No 170
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.43 E-value=9.9e-07 Score=93.34 Aligned_cols=35 Identities=23% Similarity=0.522 Sum_probs=32.4
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
++||+||||||+|+++|..|+++|++ |+|||+.+.
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~---v~viE~~~~ 57 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVP---VVLLDDDDT 57 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCc---EEEEeCCCC
Confidence 47999999999999999999999988 899999874
No 171
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.43 E-value=1.1e-06 Score=88.35 Aligned_cols=116 Identities=20% Similarity=0.288 Sum_probs=68.2
Q ss_pred eEEEECCchHHHHHHHHH--HHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCC-------CCCCCCcccccCCc----
Q 011700 6 VYVIVGGGVAAGYAALEF--TKRGVPPGELCIISEEPVAPYERPALSKGYLLPEA-------PARLPSFHTCVGAN---- 72 (479)
Q Consensus 6 dvvIIGgG~aGl~aA~~l--~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~---- 72 (479)
|||||||||||+++|.+| ++.|.+ |+|||+++..++..... ..+..... ...++.........
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~---Vllid~~~~~~~~~~~t-W~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~ 76 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLS---VLLIDPKPKPPWPNDRT-WCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRIL 76 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCE---EEEEcCCccccccCCcc-cccccccccchHHHHheecCceEEEeCCCceEE
Confidence 899999999999999999 555555 99999987653332221 00110000 01111111000000
Q ss_pred --------ccCCCHh----HHHHcCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCcc
Q 011700 73 --------EERLTPK----WYNEHGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARAL 126 (479)
Q Consensus 73 --------~~~~~~~----~~~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~ 126 (479)
....+.+ .+...++ .+.++.|.+|+.... .+.+.+|++++++.||-|+|..+.
T Consensus 77 ~~~~Y~~i~~~~f~~~l~~~~~~~~~-~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 77 IDYPYCMIDRADFYEFLLERAAAGGV-IRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred cccceEEEEHHHHHHHHHHHhhhCCe-EEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 0001111 1222344 455678999987765 567788899999999999995543
No 172
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.42 E-value=2.3e-06 Score=74.70 Aligned_cols=34 Identities=24% Similarity=0.482 Sum_probs=29.6
Q ss_pred EEECCchHHHHHHHHHHHcC--CCCCcEEEEcCCCC
Q 011700 8 VIVGGGVAAGYAALEFTKRG--VPPGELCIISEEPV 41 (479)
Q Consensus 8 vIIGgG~aGl~aA~~l~~~g--~~~~~V~lie~~~~ 41 (479)
+|||+|++|++++.+|.++. .+..+|+|||+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 59999999999999999974 45668999999765
No 173
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.42 E-value=1.3e-05 Score=80.69 Aligned_cols=57 Identities=19% Similarity=0.240 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700 203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 262 (479)
Q Consensus 203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p 262 (479)
+..+.+.+.+.+++.|++++.+++|.+++.+ ++.+ .+.+.++ ++.+|.||+|+|...
T Consensus 144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~~~-~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 144 AEKALRALQELAEAHGATVRDGTKVVEIEPT-ELLV-TVKTTKG-SYQANKLVVTAGAWT 200 (380)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCeE-EEEeCCC-EEEeCEEEEecCcch
Confidence 3456677778888899999999999999873 4443 4666665 799999999999653
No 174
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.42 E-value=8e-07 Score=89.88 Aligned_cols=122 Identities=21% Similarity=0.280 Sum_probs=71.1
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc-------cc---------ccccCC---CCCCCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA-------LS---------KGYLLP---EAPARLPS 64 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~-------l~---------~~~~~~---~~~~~~~~ 64 (479)
++||+||||||||+++|..|++.|.+ |+|+|+.+........ +. .++... ........
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ 81 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLR---VALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYD 81 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCe---EEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceE
Confidence 48999999999999999999999887 9999998653210000 00 000000 00000000
Q ss_pred ----------cccc---cCCc----------ccCCCHhHHHHcC-cEEEeCceEEEEECCCc--EEEeCCCcEEEeceEE
Q 011700 65 ----------FHTC---VGAN----------EERLTPKWYNEHG-IELVLGTRVKSADVRRK--TLVTATGETISYKILI 118 (479)
Q Consensus 65 ----------~~~~---~~~~----------~~~~~~~~~~~~g-v~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lv 118 (479)
+... .... ....+.+.+++.+ ++++ ++++.++..++. .+.+.++.++.+|.+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI 160 (388)
T PRK07608 82 MRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVV 160 (388)
T ss_pred EEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEE
Confidence 0000 0000 0001122334555 8888 778888865443 4556677789999999
Q ss_pred eecCCCccccc
Q 011700 119 IATGARALKLE 129 (479)
Q Consensus 119 iAtG~~~~~~~ 129 (479)
.|+|.......
T Consensus 161 ~adG~~S~vr~ 171 (388)
T PRK07608 161 GADGAHSWVRS 171 (388)
T ss_pred EeCCCCchHHH
Confidence 99998754433
No 175
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.42 E-value=1.4e-06 Score=91.94 Aligned_cols=35 Identities=26% Similarity=0.246 Sum_probs=32.5
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
.+||+||||||+|+++|..|+++|++ |+|+|+.+.
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~---v~v~Er~~~ 44 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVR---VLVLERWPT 44 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCC
Confidence 58999999999999999999999987 999999864
No 176
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.40 E-value=6.6e-06 Score=86.35 Aligned_cols=101 Identities=24% Similarity=0.324 Sum_probs=81.1
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeec--Ccc-----------ccccCCHHHHHHHHHHHHhCCcEEEcCCceE
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE--AHC-----------MARLFTPKIASYYEEYYKSKGVKFVKGTVLS 228 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~--~~~-----------l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~ 228 (479)
..+++|||+|+.|+.+|..+++.|.+|+++.+. ..+ .+....+++.+.+.+.+++.|++++.++++.
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~ 290 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS 290 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 458999999999999999999999999999653 111 0111346788889999999999999999999
Q ss_pred EEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700 229 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 264 (479)
Q Consensus 229 ~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~ 264 (479)
++...+ + ...+.+.+++++.+|.|++|+|.+|..
T Consensus 291 ~I~~~~-~-~~~V~~~~g~~i~a~~vViAtG~~~r~ 324 (517)
T PRK15317 291 KLEPAA-G-LIEVELANGAVLKAKTVILATGARWRN 324 (517)
T ss_pred EEEecC-C-eEEEEECCCCEEEcCEEEECCCCCcCC
Confidence 998732 2 345677888899999999999998754
No 177
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.40 E-value=8.8e-07 Score=89.81 Aligned_cols=44 Identities=23% Similarity=0.387 Sum_probs=34.8
Q ss_pred cCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCccc
Q 011700 84 HGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALK 127 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~ 127 (479)
.+++++.+++++++..++. .+.+.++.++.+|.||.|.|.....
T Consensus 126 ~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~v 171 (395)
T PRK05732 126 PGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSAL 171 (395)
T ss_pred CCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChhh
Confidence 4799999999998875543 4566777889999999999987543
No 178
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.39 E-value=1.4e-06 Score=88.22 Aligned_cols=32 Identities=19% Similarity=0.472 Sum_probs=30.6
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEE 39 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 39 (479)
|||+||||||||+++|+.|++.|++ |+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~---V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIE---TILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCc---EEEEECC
Confidence 7999999999999999999999987 9999997
No 179
>PRK11445 putative oxidoreductase; Provisional
Probab=98.39 E-value=1.9e-06 Score=85.86 Aligned_cols=119 Identities=18% Similarity=0.274 Sum_probs=67.7
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC---CCCCCc---ccc---------cccCCCCC-C-----CCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA---PYERPA---LSK---------GYLLPEAP-A-----RLP 63 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~---~~~~~~---l~~---------~~~~~~~~-~-----~~~ 63 (479)
|||+||||||||+++|..|++. ++ |+++|+.+.. ++..++ ++. ++..+... . ...
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~---V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~ 77 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MK---VIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVK 77 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CC---EEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceee
Confidence 8999999999999999999997 66 9999988642 122212 100 00000000 0 000
Q ss_pred Ccccc------cCCc----ccCCCHhHH---HHcCcEEEeCceEEEEECCCc--EEEe-CCCc--EEEeceEEeecCCCc
Q 011700 64 SFHTC------VGAN----EERLTPKWY---NEHGIELVLGTRVKSADVRRK--TLVT-ATGE--TISYKILIIATGARA 125 (479)
Q Consensus 64 ~~~~~------~~~~----~~~~~~~~~---~~~gv~~~~~~~v~~i~~~~~--~v~~-~~g~--~~~~d~lviAtG~~~ 125 (479)
..... .+.. ....+.+++ ...+++++.++.+..+..+.. .+.+ .+++ ++++|.||.|+|...
T Consensus 78 ~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S 157 (351)
T PRK11445 78 TIDLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANS 157 (351)
T ss_pred EecccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCc
Confidence 00000 0000 000111222 246899999988888865443 3443 4553 689999999999875
Q ss_pred cc
Q 011700 126 LK 127 (479)
Q Consensus 126 ~~ 127 (479)
..
T Consensus 158 ~v 159 (351)
T PRK11445 158 MV 159 (351)
T ss_pred HH
Confidence 43
No 180
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.39 E-value=5.1e-06 Score=84.26 Aligned_cols=84 Identities=12% Similarity=0.125 Sum_probs=60.4
Q ss_pred HHHHHHHhhCCCeEEEEeecCccccc-cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccE
Q 011700 175 MECAASLVINKINVTMVFPEAHCMAR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDM 253 (479)
Q Consensus 175 ~E~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~ 253 (479)
-++...+.+.|.+++.... .++++. ....++.+.+.+.+++.|++++.++.+.+++.+ ++. ..+.+ +++++.+|.
T Consensus 76 ~d~~~~~~~~Gv~~~~~~~-g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~-~~v~~-~~~~i~ad~ 151 (400)
T TIGR00275 76 KDLIDFFESLGLELKVEED-GRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD-DNG-FGVET-SGGEYEADK 151 (400)
T ss_pred HHHHHHHHHcCCeeEEecC-CEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CCe-EEEEE-CCcEEEcCE
Confidence 3455667777888776543 334432 134678888899999999999999999999763 332 34555 566899999
Q ss_pred EEEecCCCC
Q 011700 254 VVVGIGIRP 262 (479)
Q Consensus 254 Vi~a~G~~p 262 (479)
||+|+|...
T Consensus 152 VIlAtG~~s 160 (400)
T TIGR00275 152 VILATGGLS 160 (400)
T ss_pred EEECCCCcc
Confidence 999999754
No 181
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.38 E-value=8.3e-07 Score=87.75 Aligned_cols=114 Identities=25% Similarity=0.365 Sum_probs=62.2
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc---c---cccccCCC-----C-------CCCC-----
Q 011700 6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA---L---SKGYLLPE-----A-------PARL----- 62 (479)
Q Consensus 6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~---l---~~~~~~~~-----~-------~~~~----- 62 (479)
||+|||||.||..||..+++.|.+ |.|+..........+| + .++.+..+ . ...+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~---V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~l 77 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAK---VLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRML 77 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT-----EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCC---EEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhcc
Confidence 899999999999999999999998 8888433221111111 1 00000000 0 0000
Q ss_pred -----CCcccccCCcccCCCH----hHHHH-cCcEEEeCceEEEEECCCcE---EEeCCCcEEEeceEEeecCC
Q 011700 63 -----PSFHTCVGANEERLTP----KWYNE-HGIELVLGTRVKSADVRRKT---LVTATGETISYKILIIATGA 123 (479)
Q Consensus 63 -----~~~~~~~~~~~~~~~~----~~~~~-~gv~~~~~~~v~~i~~~~~~---v~~~~g~~~~~d~lviAtG~ 123 (479)
|.........+...+. +.+.+ .+++++.+ +|..+..++.. |.+.+|+.+.+|.+|+|||.
T Consensus 78 N~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~-~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 78 NRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQG-EVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp STTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES--EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred cccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEc-ccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 0000000000011122 22333 58999875 89999887665 45688999999999999998
No 182
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.38 E-value=2.2e-06 Score=86.90 Aligned_cols=99 Identities=17% Similarity=0.332 Sum_probs=73.2
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCC--eEEEEeecCccc-cc-cCCHHHH-----H----HHHHHHHhCCcEEEcCCceE
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCM-AR-LFTPKIA-----S----YYEEYYKSKGVKFVKGTVLS 228 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~--~Vtlv~~~~~~l-~~-~~~~~~~-----~----~~~~~l~~~GV~i~~~~~v~ 228 (479)
.++++|||+|+.|+.+|..|++.+. +|+++.+.+... .+ .+...+. + .-.+.+++.+|+++.++.+.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~ 82 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK 82 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence 5789999999999999999999875 799998775421 10 1222110 0 01345677899999999999
Q ss_pred EEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700 229 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 264 (479)
Q Consensus 229 ~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~ 264 (479)
.++.. + + .+.+.+|+++.+|.+++|||.+|..
T Consensus 83 ~id~~-~-~--~v~~~~g~~~~yd~LViATGs~~~~ 114 (396)
T PRK09754 83 TLGRD-T-R--ELVLTNGESWHWDQLFIATGAAARP 114 (396)
T ss_pred EEECC-C-C--EEEECCCCEEEcCEEEEccCCCCCC
Confidence 99762 2 2 4667888899999999999999854
No 183
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.37 E-value=1.6e-06 Score=88.98 Aligned_cols=100 Identities=21% Similarity=0.268 Sum_probs=75.5
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... . +. ++ ........+.+++
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~~-~-~~-------------~~-------~~~~~~~~~~l~~ 191 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKN---VTLIHRSERIL-N-KL-------------FD-------EEMNQIVEEELKK 191 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCc---EEEEECCcccC-c-cc-------------cC-------HHHHHHHHHHHHH
Confidence 36899999999999999999998876 99999875310 0 00 00 0111234566788
Q ss_pred cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccc
Q 011700 84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKL 128 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~ 128 (479)
.||+++.++.+.+++.++..+.+.+++++.+|.||+|+|.+|...
T Consensus 192 ~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 236 (427)
T TIGR03385 192 HEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNSE 236 (427)
T ss_pred cCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCCHH
Confidence 999999999999998776654666788999999999999987643
No 184
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.37 E-value=7.6e-07 Score=68.26 Aligned_cols=78 Identities=19% Similarity=0.362 Sum_probs=57.5
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHcC
Q 011700 6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEHG 85 (479)
Q Consensus 6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 85 (479)
+++|||||+.|+.+|..|+++|.+ |+++++.+... + .+ .........+++++.|
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~---vtli~~~~~~~---~----------------~~----~~~~~~~~~~~l~~~g 54 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKE---VTLIERSDRLL---P----------------GF----DPDAAKILEEYLRKRG 54 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSE---EEEEESSSSSS---T----------------TS----SHHHHHHHHHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHHhCcE---EEEEeccchhh---h----------------hc----CHHHHHHHHHHHHHCC
Confidence 589999999999999999998876 99999986421 0 00 0111234567788999
Q ss_pred cEEEeCceEEEEECCCcE--EEeCCC
Q 011700 86 IELVLGTRVKSADVRRKT--LVTATG 109 (479)
Q Consensus 86 v~~~~~~~v~~i~~~~~~--v~~~~g 109 (479)
|+++.++.+.+++.++.. |+++||
T Consensus 55 V~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 55 VEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp EEEEESEEEEEEEEETTSEEEEEETS
T ss_pred CEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 999999999999876543 555443
No 185
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.37 E-value=6.7e-07 Score=92.91 Aligned_cols=57 Identities=25% Similarity=0.309 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC
Q 011700 203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI 260 (479)
Q Consensus 203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~ 260 (479)
-..+.+.+.+.+++.|++|+++++|++|.. ++++.+.+...+|+.+++|.|+.....
T Consensus 223 ~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v-~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 223 MGALVDALAELAREHGGEIRTGAEVSQILV-EGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCceEEEEE-eCCcceEEeccccceeccceeEecCch
Confidence 356788899999999999999999999998 566666777788878999999999876
No 186
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.37 E-value=5.1e-06 Score=87.10 Aligned_cols=102 Identities=21% Similarity=0.318 Sum_probs=80.9
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeec--Cccc-----------cccCCHHHHHHHHHHHHhCCcEEEcCCce
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE--AHCM-----------ARLFTPKIASYYEEYYKSKGVKFVKGTVL 227 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~--~~~l-----------~~~~~~~~~~~~~~~l~~~GV~i~~~~~v 227 (479)
...+++|||+|+.|+.+|..+++.|.+|+++... ..+. +....+++.+.+.+.+++.|++++.+++|
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V 290 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRA 290 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEE
Confidence 4578999999999999999999999999998642 1111 11134677888888899999999999999
Q ss_pred EEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700 228 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 264 (479)
Q Consensus 228 ~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~ 264 (479)
.+++.. ++ ...+.+.+|+.+.+|.+++|+|.+|..
T Consensus 291 ~~I~~~-~~-~~~v~~~~g~~i~~d~lIlAtGa~~~~ 325 (515)
T TIGR03140 291 KKIETE-DG-LIVVTLESGEVLKAKSVIVATGARWRK 325 (515)
T ss_pred EEEEec-CC-eEEEEECCCCEEEeCEEEECCCCCcCC
Confidence 999763 22 235667788899999999999998754
No 187
>PRK06126 hypothetical protein; Provisional
Probab=98.36 E-value=1.8e-06 Score=91.49 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=32.5
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
.+||+||||||+|+++|..|+++|++ |+|+|+.+.
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~---v~viEr~~~ 41 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVD---SILVERKDG 41 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCC
Confidence 57999999999999999999999998 999998864
No 188
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.36 E-value=5.3e-07 Score=89.61 Aligned_cols=35 Identities=34% Similarity=0.518 Sum_probs=30.7
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
.+||+||||||+|+++|..|+++|++ |+|||+.+.
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~---v~i~E~~~~ 35 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGID---VTIIERRPD 35 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCE---EEEEESSSS
T ss_pred CceEEEECCCHHHHHHHHHHHhcccc---cccchhccc
Confidence 37999999999999999999999998 999999876
No 189
>PRK07588 hypothetical protein; Provisional
Probab=98.36 E-value=2.5e-06 Score=86.43 Aligned_cols=120 Identities=17% Similarity=0.185 Sum_probs=70.3
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC--cc-cc--------cccC--CCCCCCCCCc------
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERP--AL-SK--------GYLL--PEAPARLPSF------ 65 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~--~l-~~--------~~~~--~~~~~~~~~~------ 65 (479)
+||+|||||++|+++|..|++.|++ |+|+|+.+...-... .+ .. ++.. ......+..+
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 77 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHE---PTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPT 77 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCc---eEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCC
Confidence 3899999999999999999999987 999998864210000 00 00 0000 0000000000
Q ss_pred -------c-----cccCCcccC----CCHhHH---HHcCcEEEeCceEEEEECCCcE--EEeCCCcEEEeceEEeecCCC
Q 011700 66 -------H-----TCVGANEER----LTPKWY---NEHGIELVLGTRVKSADVRRKT--LVTATGETISYKILIIATGAR 124 (479)
Q Consensus 66 -------~-----~~~~~~~~~----~~~~~~---~~~gv~~~~~~~v~~i~~~~~~--v~~~~g~~~~~d~lviAtG~~ 124 (479)
. ...+..... .+...+ ...+++++.+++|.+++.+... +.+.+|+++++|.||.|.|.+
T Consensus 78 g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~ 157 (391)
T PRK07588 78 GRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLH 157 (391)
T ss_pred CCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 0 000000000 011111 1346899999999999876554 556788889999999999977
Q ss_pred ccc
Q 011700 125 ALK 127 (479)
Q Consensus 125 ~~~ 127 (479)
...
T Consensus 158 S~v 160 (391)
T PRK07588 158 SHV 160 (391)
T ss_pred ccc
Confidence 544
No 190
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.36 E-value=2.7e-06 Score=89.20 Aligned_cols=58 Identities=21% Similarity=0.325 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700 204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 262 (479)
Q Consensus 204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p 262 (479)
..+.+.+.+.+++.|+++++++.|.+|.. +++++..|.+.+|+++.+|.||++++...
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~-~~~~~~~V~~~~g~~~~ad~VI~a~~~~~ 276 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIET-EGGRATAVHLADGERLDADAVVSNADLHH 276 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEe-eCCEEEEEEECCCCEEECCEEEECCcHHH
Confidence 56788888899999999999999999987 45666788889998999999999887543
No 191
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.35 E-value=9.6e-06 Score=82.69 Aligned_cols=57 Identities=26% Similarity=0.355 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC-----CcEEeccEEEEecCCCC
Q 011700 204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-----GNRLPTDMVVVGIGIRP 262 (479)
Q Consensus 204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~-----g~~i~~D~Vi~a~G~~p 262 (479)
..+...+.+.+++.|++++.+++|.+++.+ ++.+ .+.+.+ +.++.+|.||+|+|...
T Consensus 197 ~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~~-~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 197 HKFTTGLAAACARLGVQFRYGQEVTSIKTD-GGGV-VLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEE-EEEEEcCCCCccceEecCEEEECCCcCh
Confidence 355667778888999999999999999863 3433 233322 23799999999999764
No 192
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.35 E-value=3.8e-06 Score=76.71 Aligned_cols=98 Identities=28% Similarity=0.420 Sum_probs=67.2
Q ss_pred EEECCChHHHHHHHHHhhCCCe-EEEEeecCccc--------------ccc----------------------------C
Q 011700 166 VVIGGGYIGMECAASLVINKIN-VTMVFPEAHCM--------------ARL----------------------------F 202 (479)
Q Consensus 166 vVIGgG~~g~E~A~~l~~~g~~-Vtlv~~~~~~l--------------~~~----------------------------~ 202 (479)
+|||+|+.|+-+|..|.+.|.+ ++++++.+.+. +.. .
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999999 99999873221 000 0
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC--CCChh
Q 011700 203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI--RPNTS 265 (479)
Q Consensus 203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~--~p~~~ 265 (479)
-+++.+++++..++.+++++++++|++++.++++ ..|++.+++++.||.||+|+|. .|...
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~~~~~~a~~VVlAtG~~~~p~~p 143 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRDGRTIRADRVVLATGHYSHPRIP 143 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEETTS-EEEEEEEEE---SSCSB---
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEecceeeeeeEEEeeeccCCCCcc
Confidence 1345677888888999999999999999986555 5688899889999999999996 55544
No 193
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.35 E-value=1.6e-06 Score=87.59 Aligned_cols=120 Identities=24% Similarity=0.331 Sum_probs=71.3
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---cc---------cccc---cCCCCCCCCC-----
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERP---AL---------SKGY---LLPEAPARLP----- 63 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~---~l---------~~~~---~~~~~~~~~~----- 63 (479)
.+||+||||||+|+++|..|++.|++ |+|||+.+....... .+ .-++ +.........
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~---V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~ 78 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLD---VTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVD 78 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCc---EEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEe
Confidence 48999999999999999999999988 999999832111100 00 0000 0000000000
Q ss_pred --C-----cccc-cC-C---------cccCCCHhHHHHc-CcEEEeCceEEEEECCCc--EEEeC-CCcEEEeceEEeec
Q 011700 64 --S-----FHTC-VG-A---------NEERLTPKWYNEH-GIELVLGTRVKSADVRRK--TLVTA-TGETISYKILIIAT 121 (479)
Q Consensus 64 --~-----~~~~-~~-~---------~~~~~~~~~~~~~-gv~~~~~~~v~~i~~~~~--~v~~~-~g~~~~~d~lviAt 121 (479)
. +... .+ . .....+.+.+.+. +++++.+++|..++.+.. ++++. +|+++++|.||-|-
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgAD 158 (387)
T COG0654 79 DGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGAD 158 (387)
T ss_pred cCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECC
Confidence 0 0000 00 0 0001112223333 499999999999987653 45666 88999999999999
Q ss_pred CCCcc
Q 011700 122 GARAL 126 (479)
Q Consensus 122 G~~~~ 126 (479)
|....
T Consensus 159 G~~S~ 163 (387)
T COG0654 159 GANSA 163 (387)
T ss_pred CCchH
Confidence 97643
No 194
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.35 E-value=1.3e-06 Score=88.25 Aligned_cols=119 Identities=23% Similarity=0.272 Sum_probs=70.4
Q ss_pred eEEEECCchHHHHHHHHHHHcC-CCCCcEEEEcCCCCCCCC-----C-Cccc---------ccccCC--CCCCCCCCccc
Q 011700 6 VYVIVGGGVAAGYAALEFTKRG-VPPGELCIISEEPVAPYE-----R-PALS---------KGYLLP--EAPARLPSFHT 67 (479)
Q Consensus 6 dvvIIGgG~aGl~aA~~l~~~g-~~~~~V~lie~~~~~~~~-----~-~~l~---------~~~~~~--~~~~~~~~~~~ 67 (479)
||+||||||+|+++|..|+++| ++ |+|+|+.+..... + ..+. -++... ........+..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~---v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~ 77 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIK---IALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHV 77 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCce---EEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEE
Confidence 7999999999999999999999 87 9999998643211 0 0000 000000 00000000000
Q ss_pred c--------------cCCc-----c-cCCCH----hHHHH-cCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEee
Q 011700 68 C--------------VGAN-----E-ERLTP----KWYNE-HGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIA 120 (479)
Q Consensus 68 ~--------------~~~~-----~-~~~~~----~~~~~-~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviA 120 (479)
. .+.. . ...+. +.+.+ .|++++.+++|+++..+.. ++.+.+++++.+|.||.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~A 157 (382)
T TIGR01984 78 SDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAA 157 (382)
T ss_pred EcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEe
Confidence 0 0000 0 00011 12234 4899999999999875443 456677888999999999
Q ss_pred cCCCccc
Q 011700 121 TGARALK 127 (479)
Q Consensus 121 tG~~~~~ 127 (479)
.|.....
T Consensus 158 dG~~S~v 164 (382)
T TIGR01984 158 DGANSKV 164 (382)
T ss_pred cCCChHH
Confidence 9977543
No 195
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.35 E-value=2.3e-06 Score=87.57 Aligned_cols=54 Identities=26% Similarity=0.254 Sum_probs=38.9
Q ss_pred ccCcEEEcCcccCCCCCeEEEeeecc-ccccccCceee-cccHHHHHHHHHHHHHHHcC
Q 011700 274 EKGGIKVTGRLQSSNSSVYAVGDVAA-FPLKLLGETRR-LEHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 274 ~~g~i~Vd~~l~t~~~~IyA~GD~~~-~~~~~~g~~~~-~~~~~~A~~~g~~aa~~i~~ 330 (479)
..|+|.||...||++|++||+|.|+. .. +|..+. -.....+.--|+.|++++..
T Consensus 330 t~GGi~vd~~~~t~i~gLYAaGE~a~~g~---hG~nrl~gnsl~~~lvfGr~Ag~~a~~ 385 (433)
T PRK06175 330 FMGGIKVDLNSKTSMKNLYAFGEVSCTGV---HGANRLASNSLLEGLVFSKRGAEKINS 385 (433)
T ss_pred ecCCEEECCCccccCCCeEecccccccCC---CccccchhHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999974 22 222111 12345667788888888753
No 196
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.34 E-value=1.2e-05 Score=80.55 Aligned_cols=54 Identities=22% Similarity=0.305 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHhC-CcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700 203 TPKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 263 (479)
Q Consensus 203 ~~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~ 263 (479)
+..+...+.+.+.++ |++++.+++|.+++. + .+.+.+| ++.+|.||+|+|...+
T Consensus 144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~----~v~t~~g-~i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 144 PREAIPALAAYLAEQHGVEFHWNTAVTSVET--G----TVRTSRG-DVHADQVFVCPGADFE 198 (365)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C----eEEeCCC-cEEeCEEEECCCCChh
Confidence 345666777777665 999999999999964 2 4666666 4789999999997543
No 197
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.34 E-value=3.1e-06 Score=84.81 Aligned_cols=116 Identities=19% Similarity=0.253 Sum_probs=66.2
Q ss_pred eEEEECCchHHHHHHHHHHHc--CCCCCcEEEEcCCCCCCCCCCc------cccc---ccCCCCCCCCCCcccccCCcc-
Q 011700 6 VYVIVGGGVAAGYAALEFTKR--GVPPGELCIISEEPVAPYERPA------LSKG---YLLPEAPARLPSFHTCVGANE- 73 (479)
Q Consensus 6 dvvIIGgG~aGl~aA~~l~~~--g~~~~~V~lie~~~~~~~~~~~------l~~~---~~~~~~~~~~~~~~~~~~~~~- 73 (479)
||+|||||+||+++|..|++. |++ |+++|+.+...-+++. +... .+.......++.+........
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~---V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~ 77 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFR---IRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRR 77 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCe---EEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhh
Confidence 799999999999999999986 665 9999998742211111 1000 000000111121111110000
Q ss_pred ----------cCCCHhH-HHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcc
Q 011700 74 ----------ERLTPKW-YNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARAL 126 (479)
Q Consensus 74 ----------~~~~~~~-~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~ 126 (479)
...+.+. ++..+..+..+++|..++.+ .+++.+|+++++|.||-|.|..+.
T Consensus 78 ~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~--~v~l~dg~~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 78 KLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDAD--GVDLAPGTRINARSVIDCRGFKPS 139 (370)
T ss_pred hcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCC--EEEECCCCEEEeeEEEECCCCCCC
Confidence 0001111 22224446667788888654 366678899999999999997753
No 198
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.34 E-value=2e-06 Score=87.16 Aligned_cols=33 Identities=27% Similarity=0.520 Sum_probs=30.9
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
+||+||||||||++||..|++.|++ |+|+|+.+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~---V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQ---TFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCc---EEEEecCC
Confidence 5899999999999999999999998 99999875
No 199
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.33 E-value=2e-06 Score=91.32 Aligned_cols=38 Identities=29% Similarity=0.387 Sum_probs=31.6
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
.++||||||||.||++||+++++.|. ..+|+|+||.+.
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~-g~~V~vleK~~~ 39 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDP-SLDVAVVAKTHP 39 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcC-CCcEEEEeccCC
Confidence 46899999999999999999998652 123999999864
No 200
>PLN02612 phytoene desaturase
Probab=98.33 E-value=9.5e-06 Score=85.90 Aligned_cols=56 Identities=14% Similarity=0.250 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecC
Q 011700 204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 259 (479)
Q Consensus 204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G 259 (479)
..+.+.+.+.+++.|.++++++.|++|+.++++.+..+.+.+|+++++|.||++++
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p 363 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATP 363 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCC
Confidence 55778888888889999999999999998667767678888899999999999975
No 201
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.32 E-value=4.6e-07 Score=92.68 Aligned_cols=115 Identities=24% Similarity=0.275 Sum_probs=29.2
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-----cccc---------c----ccCCC-C--CCCC-C
Q 011700 6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERP-----ALSK---------G----YLLPE-A--PARL-P 63 (479)
Q Consensus 6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~-----~l~~---------~----~~~~~-~--~~~~-~ 63 (479)
||||||||+||++||+.+++.|.+ |+|||+.+....... .... + +.... . .... +
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~---VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~ 77 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAK---VLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQED 77 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS----EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST----------
T ss_pred CEEEECccHHHHHHHHHHHHCCCE---EEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccc
Confidence 899999999999999999999998 999999976321100 0000 0 00000 0 0000 0
Q ss_pred Ccc----cccC-CcccCCCHhHHHHcCcEEEeCceEEEEECCCcEE---EeCC---CcEEEeceEEeecCC
Q 011700 64 SFH----TCVG-ANEERLTPKWYNEHGIELVLGTRVKSADVRRKTL---VTAT---GETISYKILIIATGA 123 (479)
Q Consensus 64 ~~~----~~~~-~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v---~~~~---g~~~~~d~lviAtG~ 123 (479)
... .... ......+.+++.+.|++++.++.+..+..++..| .+.+ ..++.++.+|-|||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 78 RYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 000 0000 1111234556677899999999999988876443 3332 467999999999994
No 202
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.32 E-value=2.3e-05 Score=79.21 Aligned_cols=58 Identities=24% Similarity=0.339 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHhCC-cEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700 203 TPKIASYYEEYYKSKG-VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 263 (479)
Q Consensus 203 ~~~~~~~~~~~l~~~G-V~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~ 263 (479)
+..+...+.+.+++.| ..+..++.+..++.. . ....+.+.+|+ +.+|.||+|+|...+
T Consensus 155 p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~-i~a~~vv~a~G~~~~ 213 (387)
T COG0665 155 PRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGT-IEADKVVLAAGAWAG 213 (387)
T ss_pred HHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCcc-EEeCEEEEcCchHHH
Confidence 3467778888888999 555568888888763 2 45678888886 999999999995533
No 203
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.31 E-value=1.2e-05 Score=83.01 Aligned_cols=58 Identities=19% Similarity=0.334 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCc-----EEeccEEEEecCC
Q 011700 203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-----RLPTDMVVVGIGI 260 (479)
Q Consensus 203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~-----~i~~D~Vi~a~G~ 260 (479)
...+.+.+.+.+++.|+++++++.|++|+..++++++.+.+.+++ ++.+|.||+++..
T Consensus 212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 212 PERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred hHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 355677888888889999999999999986556767778886665 7999999999864
No 204
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.31 E-value=3e-06 Score=87.05 Aligned_cols=34 Identities=26% Similarity=0.450 Sum_probs=31.9
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
++||+||||||||++||..|++.|++ |+|+|+.+
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~---VlllEr~~ 72 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIE---TFLIERKL 72 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCc---EEEEecCC
Confidence 58999999999999999999999998 89999875
No 205
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.31 E-value=3.5e-06 Score=86.83 Aligned_cols=101 Identities=19% Similarity=0.305 Sum_probs=72.3
Q ss_pred CCEEEECCChHHHHHHHHHhhCC--CeEEEEeecCcc------cc----ccCC--HHHHHHHHHHHHhCCcEEEcCCceE
Q 011700 163 GNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHC------MA----RLFT--PKIASYYEEYYKSKGVKFVKGTVLS 228 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~------l~----~~~~--~~~~~~~~~~l~~~GV~i~~~~~v~ 228 (479)
++++|||+|+.|+.+|..|++++ .+|+++++++.+ ++ ..++ .++.....+.+++.||+++.++.+.
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 80 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV 80 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence 37999999999999999999875 489999988753 11 1011 1223334566788899999999999
Q ss_pred EEEEcCCCcEEEEEe-CCCcEEe--ccEEEEecCCCCChh
Q 011700 229 SFDVDSNGKVVAVNL-RDGNRLP--TDMVVVGIGIRPNTS 265 (479)
Q Consensus 229 ~i~~~~~g~v~~v~~-~~g~~i~--~D~Vi~a~G~~p~~~ 265 (479)
+++.+ +. ...+.. .++++++ +|.+++|||.+|+..
T Consensus 81 ~id~~-~~-~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 118 (444)
T PRK09564 81 KVDAK-NK-TITVKNLKTGSIFNDTYDKLMIATGARPIIP 118 (444)
T ss_pred EEECC-CC-EEEEEECCCCCEEEecCCEEEECCCCCCCCC
Confidence 99862 32 223332 2355666 999999999998754
No 206
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.31 E-value=1.6e-05 Score=81.88 Aligned_cols=103 Identities=20% Similarity=0.266 Sum_probs=76.4
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc----------------------------------------
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR---------------------------------------- 200 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~---------------------------------------- 200 (479)
..++|+|||+|+.|+-+|..|.+.|.+|+++++++.+-..
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 3689999999999999999999999999999986422100
Q ss_pred ----c-------------C--CHHHHHHHHHHHHhCCcE--EEcCCceEEEEEcCCCcEEEEEeCCC--c--EEeccEEE
Q 011700 201 ----L-------------F--TPKIASYYEEYYKSKGVK--FVKGTVLSSFDVDSNGKVVAVNLRDG--N--RLPTDMVV 255 (479)
Q Consensus 201 ----~-------------~--~~~~~~~~~~~l~~~GV~--i~~~~~v~~i~~~~~g~v~~v~~~~g--~--~i~~D~Vi 255 (479)
. + ..++.++++++.++.|++ ++++++|.+++.. +++ ..|.+.++ . +..+|.||
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~-~~~-w~V~~~~~~~~~~~~~~d~VI 166 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPV-DGK-WRVQSKNSGGFSKDEIFDAVV 166 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeec-CCe-EEEEEEcCCCceEEEEcCEEE
Confidence 0 0 145777788888888988 8899999999873 333 34554432 2 46799999
Q ss_pred EecC--CCCChh
Q 011700 256 VGIG--IRPNTS 265 (479)
Q Consensus 256 ~a~G--~~p~~~ 265 (479)
+|+| ..|+..
T Consensus 167 vAtG~~~~P~~P 178 (461)
T PLN02172 167 VCNGHYTEPNVA 178 (461)
T ss_pred EeccCCCCCcCC
Confidence 9999 466654
No 207
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.31 E-value=3.3e-06 Score=85.00 Aligned_cols=34 Identities=15% Similarity=0.261 Sum_probs=31.6
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
++||+|||||+.|+++|++|+++|++ |+|+|++.
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~~---V~lie~~~ 36 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGLR---VLGLDRFM 36 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCe---EEEEeccc
Confidence 58999999999999999999999876 99999875
No 208
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.30 E-value=2.9e-06 Score=85.52 Aligned_cols=99 Identities=18% Similarity=0.341 Sum_probs=74.6
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... . .. ++ ........+.+++
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~---Vtlv~~~~~~l-~------~~--------~~-------~~~~~~l~~~l~~ 195 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKA---VTLVDNAASLL-A------SL--------MP-------PEVSSRLQHRLTE 195 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCe---EEEEecCCccc-c------hh--------CC-------HHHHHHHHHHHHh
Confidence 36899999999999999999998876 99999875311 0 00 00 0011234566788
Q ss_pred cCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCccc
Q 011700 84 HGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALK 127 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~ 127 (479)
.|++++.++.+.+++.+.. .+.+.+++++.+|.+|+|+|.+|..
T Consensus 196 ~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 196 MGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNT 241 (377)
T ss_pred CCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcch
Confidence 9999999999999987643 4566788899999999999998853
No 209
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.30 E-value=1.1e-05 Score=83.58 Aligned_cols=55 Identities=16% Similarity=0.240 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCC
Q 011700 203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR 261 (479)
Q Consensus 203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~ 261 (479)
+..+...+.+.+++.|++++.++.|.+++. .+ . ..|.+.+| ++.+|.||+|+|.-
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~-~-~~v~t~~g-~v~A~~VV~Atga~ 236 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEE-GQ-P-AVVRTPDG-QVTADKVVLALNAW 236 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEee-CC-c-eEEEeCCc-EEECCEEEEccccc
Confidence 456677888888999999999999999975 22 2 34666666 69999999999854
No 210
>PRK05868 hypothetical protein; Validated
Probab=98.30 E-value=3.8e-06 Score=84.40 Aligned_cols=119 Identities=16% Similarity=0.187 Sum_probs=70.7
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcc--c---------ccccC--CCCCCCCCCc------
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPAL--S---------KGYLL--PEAPARLPSF------ 65 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l--~---------~~~~~--~~~~~~~~~~------ 65 (479)
+||+|||||++|+++|..|++.|++ |+|+|+.+...-....+ . -++.. ..........
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~---v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~ 78 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYS---VTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRD 78 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCC---EEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCC
Confidence 5999999999999999999999987 99999986521100000 0 00000 0000000000
Q ss_pred -------------ccccCC-cccC---CCHhHHH---HcCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCC
Q 011700 66 -------------HTCVGA-NEER---LTPKWYN---EHGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGA 123 (479)
Q Consensus 66 -------------~~~~~~-~~~~---~~~~~~~---~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~ 123 (479)
...... .... .+.+.+. ..+++++.++++++++.+.. ++.+.++.++++|.||-|-|.
T Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~ 158 (372)
T PRK05868 79 GNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGL 158 (372)
T ss_pred CCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCC
Confidence 000000 0000 1112222 35899999999999875544 456678889999999999997
Q ss_pred Ccc
Q 011700 124 RAL 126 (479)
Q Consensus 124 ~~~ 126 (479)
+..
T Consensus 159 ~S~ 161 (372)
T PRK05868 159 HSN 161 (372)
T ss_pred Cch
Confidence 653
No 211
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.29 E-value=2.5e-06 Score=86.05 Aligned_cols=119 Identities=24% Similarity=0.303 Sum_probs=70.6
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC------C-Cccc---------ccccCC--C-CCCCCCCcc
Q 011700 6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYE------R-PALS---------KGYLLP--E-APARLPSFH 66 (479)
Q Consensus 6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~------~-~~l~---------~~~~~~--~-~~~~~~~~~ 66 (479)
||+||||||||+++|..|++.|++ |+|+|+.+..... + ..++ -++... . .......+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~---v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 77 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLK---IALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIH 77 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCE---EEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEE
Confidence 799999999999999999999987 9999999752111 0 0000 000000 0 000000000
Q ss_pred -----------ccc---CCc----------ccCCCHhHHHHcC-cEEEeCceEEEEECCCcE--EEeCCCcEEEeceEEe
Q 011700 67 -----------TCV---GAN----------EERLTPKWYNEHG-IELVLGTRVKSADVRRKT--LVTATGETISYKILII 119 (479)
Q Consensus 67 -----------~~~---~~~----------~~~~~~~~~~~~g-v~~~~~~~v~~i~~~~~~--v~~~~g~~~~~d~lvi 119 (479)
... ... ....+.+.+.+.+ ++++.+++|++++.+... +.+.+|+++.+|.||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~ 157 (385)
T TIGR01988 78 VSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVG 157 (385)
T ss_pred EEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEE
Confidence 000 000 0001112233455 999999999998765544 4557888899999999
Q ss_pred ecCCCccc
Q 011700 120 ATGARALK 127 (479)
Q Consensus 120 AtG~~~~~ 127 (479)
|.|.....
T Consensus 158 adG~~S~v 165 (385)
T TIGR01988 158 ADGANSKV 165 (385)
T ss_pred eCCCCCHH
Confidence 99977543
No 212
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.27 E-value=3.6e-06 Score=87.06 Aligned_cols=98 Identities=17% Similarity=0.334 Sum_probs=72.4
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH 84 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (479)
.+++|||||+.|+.+|..+++.|.+ |+++++.+... +.+. .+......+.+++.
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~---Vtli~~~~~ll-------------------~~~d----~e~~~~l~~~L~~~ 224 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTK---VTIVEMAPQLL-------------------PGED----EDIAHILREKLEND 224 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCcC-------------------cccc----HHHHHHHHHHHHHC
Confidence 5899999999999999999998876 89999875310 0000 01112345667788
Q ss_pred CcEEEeCceEEEEECCCcEEEeC-CC--cEEEeceEEeecCCCcccc
Q 011700 85 GIELVLGTRVKSADVRRKTLVTA-TG--ETISYKILIIATGARALKL 128 (479)
Q Consensus 85 gv~~~~~~~v~~i~~~~~~v~~~-~g--~~~~~d~lviAtG~~~~~~ 128 (479)
|++++.++++.+++.++..+.+. ++ .++.+|.|++|+|.+|...
T Consensus 225 GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~ 271 (458)
T PRK06912 225 GVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQ 271 (458)
T ss_pred CCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCC
Confidence 99999999999998766555442 33 3689999999999988753
No 213
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.27 E-value=1.2e-05 Score=87.11 Aligned_cols=58 Identities=9% Similarity=0.149 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700 203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 263 (479)
Q Consensus 203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~ 263 (479)
+..+.+.+.+.+++ |++++.++.|++++.. ++.+ .+.+.++..+.+|.||+|+|....
T Consensus 407 p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~-~~~~-~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 407 PAELCRALLALAGQ-QLTIHFGHEVARLERE-DDGW-QLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred HHHHHHHHHHhccc-CcEEEeCCEeeEEEEe-CCEE-EEEECCCcEEECCEEEECCCCCcc
Confidence 45677778888888 9999999999999863 4444 377778877899999999997643
No 214
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.27 E-value=4.5e-05 Score=77.67 Aligned_cols=57 Identities=19% Similarity=0.285 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCC
Q 011700 204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR 261 (479)
Q Consensus 204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~ 261 (479)
..+...+.+.+++.|++++.+++|++++..+++.+..+.+.+| ++.++.||+++|-.
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~ 239 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGH 239 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChh
Confidence 3455667778889999999999999997634566666777777 69999998887754
No 215
>PRK07233 hypothetical protein; Provisional
Probab=98.26 E-value=4.3e-06 Score=85.83 Aligned_cols=56 Identities=23% Similarity=0.282 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCC
Q 011700 204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR 261 (479)
Q Consensus 204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~ 261 (479)
..+.+.+.+.+++.|++++++++|++|+.+ ++.+..+. .+++++++|.||++++..
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~-~~~~~~~~-~~~~~~~ad~vI~a~p~~ 253 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVID-GGGVTGVE-VDGEEEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEc-CCceEEEE-eCCceEECCEEEECCCHH
Confidence 567788888898999999999999999873 44443333 566789999999998753
No 216
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.26 E-value=1.3e-06 Score=77.81 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=32.2
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
..||+||||||+||+||++|++.|++ |+++|++-.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~k---V~i~E~~ls 64 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLK---VAIFERKLS 64 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCce---EEEEEeecc
Confidence 36999999999999999999999998 999999854
No 217
>PRK06753 hypothetical protein; Provisional
Probab=98.26 E-value=6.9e-06 Score=82.62 Aligned_cols=119 Identities=15% Similarity=0.181 Sum_probs=69.4
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc--cc---------ccccCC--CCCCCCCCccc--cc
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA--LS---------KGYLLP--EAPARLPSFHT--CV 69 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~--l~---------~~~~~~--~~~~~~~~~~~--~~ 69 (479)
+||+||||||||+++|..|++.|++ |+|+|+.+........ +. -++... ........+.. ..
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~---v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~ 77 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHE---VKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDK 77 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCC
Confidence 3899999999999999999999987 9999998752111000 00 000000 00000000000 00
Q ss_pred CC-----------cc----cCCCHhHHHH--cCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCcc
Q 011700 70 GA-----------NE----ERLTPKWYNE--HGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARAL 126 (479)
Q Consensus 70 ~~-----------~~----~~~~~~~~~~--~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~ 126 (479)
+. .. ...+.+.+.+ .+.+++.++++++++.++. ++++.+|+++.+|.||-|.|.+..
T Consensus 78 g~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 78 GTLLNKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK 153 (373)
T ss_pred CCEEeecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH
Confidence 00 00 0011222222 2457888999999976554 455678888999999999997643
No 218
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.26 E-value=2.7e-06 Score=88.99 Aligned_cols=38 Identities=18% Similarity=0.458 Sum_probs=35.1
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
|++.+||||||||..|+++|++|+++|++ |+|||+++.
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~---V~LvEk~d~ 40 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRGLS---VLLCEQDDL 40 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCe---EEEEecCCC
Confidence 66779999999999999999999999998 999999864
No 219
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.25 E-value=5.4e-06 Score=86.71 Aligned_cols=36 Identities=36% Similarity=0.469 Sum_probs=32.9
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
.++||||||+|.||++||+++++.|.+ |+|||+.+.
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~---VivlEK~~~ 95 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMN---PVILEKMPV 95 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCC---EEEEECCCC
Confidence 358999999999999999999999987 999999875
No 220
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.25 E-value=3.7e-06 Score=86.41 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=35.5
Q ss_pred CcEEEeCceEEEEEC---------CCcEEEeCCCcEEEeceEEeecCCCccccc
Q 011700 85 GIELVLGTRVKSADV---------RRKTLVTATGETISYKILIIATGARALKLE 129 (479)
Q Consensus 85 gv~~~~~~~v~~i~~---------~~~~v~~~~g~~~~~d~lviAtG~~~~~~~ 129 (479)
+++++.++++.+++. +.-++.+.+|+++++|.||-|-|.....-.
T Consensus 134 ~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~ 187 (437)
T TIGR01989 134 NVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVRK 187 (437)
T ss_pred CeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhHH
Confidence 489999999999863 223566788899999999999998765443
No 221
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.25 E-value=3.5e-06 Score=84.80 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=30.8
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
+||+||||||+|+++|..|++.|++ |+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~---v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIK---TTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCe---EEEecCCC
Confidence 7999999999999999999999987 99999863
No 222
>PRK14694 putative mercuric reductase; Provisional
Probab=98.24 E-value=5e-06 Score=86.27 Aligned_cols=98 Identities=17% Similarity=0.242 Sum_probs=71.9
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||+|+.|+..|..|+++|.+ |+++++....+. + .........+.+++
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~---Vtlv~~~~~l~~--------------------~----~~~~~~~l~~~l~~ 230 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSR---VTVLARSRVLSQ--------------------E----DPAVGEAIEAAFRR 230 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEECCCCCCC--------------------C----CHHHHHHHHHHHHh
Confidence 36899999999999999999998876 899986532110 0 00111345667788
Q ss_pred cCcEEEeCceEEEEECCCcEEEe-CCCcEEEeceEEeecCCCcccc
Q 011700 84 HGIELVLGTRVKSADVRRKTLVT-ATGETISYKILIIATGARALKL 128 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~-~~g~~~~~d~lviAtG~~~~~~ 128 (479)
.||+++.++.+.+++.++..+.+ .++.++.+|.||+|+|.+|...
T Consensus 231 ~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~ 276 (468)
T PRK14694 231 EGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGRTPNTE 276 (468)
T ss_pred CCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCCCCcC
Confidence 99999999999999876654332 2344799999999999998754
No 223
>PRK06847 hypothetical protein; Provisional
Probab=98.23 E-value=1.5e-05 Score=80.14 Aligned_cols=102 Identities=23% Similarity=0.344 Sum_probs=79.5
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc---------------------------------------c--
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA---------------------------------------R-- 200 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------------~-- 200 (479)
.++|+|||+|+.|+-+|..|++.|.+|+++++.+.+.. .
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~ 83 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT 83 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence 57899999999999999999999999999987642100 0
Q ss_pred ---cC-----------------CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC
Q 011700 201 ---LF-----------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI 260 (479)
Q Consensus 201 ---~~-----------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~ 260 (479)
.+ .+++.+.+.+.+++.|++++.++++++++.+ ++. ..+.+.+|+++.+|.||.|.|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~-~~v~~~~g~~~~ad~vI~AdG~ 161 (375)
T PRK06847 84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQD-DDG-VTVTFSDGTTGRYDLVVGADGL 161 (375)
T ss_pred EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEc-CCE-EEEEEcCCCEEEcCEEEECcCC
Confidence 00 0345566777777789999999999999873 333 3577888999999999999998
Q ss_pred CCChh
Q 011700 261 RPNTS 265 (479)
Q Consensus 261 ~p~~~ 265 (479)
.+...
T Consensus 162 ~s~~r 166 (375)
T PRK06847 162 YSKVR 166 (375)
T ss_pred Ccchh
Confidence 87654
No 224
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.23 E-value=5.7e-06 Score=85.95 Aligned_cols=99 Identities=20% Similarity=0.295 Sum_probs=71.6
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||++|+.+|..|++.|.+ |+++++.+... |.+. ........+.+++
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~---Vtli~~~~~il-------------------~~~~----~~~~~~l~~~l~~ 233 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVE---VTVVEAADRIL-------------------PTED----AELSKEVARLLKK 233 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCe---EEEEEecCccC-------------------CcCC----HHHHHHHHHHHHh
Confidence 36899999999999999999998876 99999875310 0000 0011234566788
Q ss_pred cCcEEEeCceEEEEEC--CCcE-E-EeCCC--cEEEeceEEeecCCCcccc
Q 011700 84 HGIELVLGTRVKSADV--RRKT-L-VTATG--ETISYKILIIATGARALKL 128 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~--~~~~-v-~~~~g--~~~~~d~lviAtG~~~~~~ 128 (479)
.||+++.++.+.+++. +++. + ...+| +++.+|.+|+|+|.+|...
T Consensus 234 ~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 284 (472)
T PRK05976 234 LGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTE 284 (472)
T ss_pred cCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCC
Confidence 8999999999999874 3333 2 23455 4699999999999998753
No 225
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.23 E-value=2.6e-06 Score=77.57 Aligned_cols=137 Identities=27% Similarity=0.385 Sum_probs=96.8
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc--ccCCH-----------HHH--H--HHHHHHHhCCcEEEcCCc
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA--RLFTP-----------KIA--S--YYEEYYKSKGVKFVKGTV 226 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~-----------~~~--~--~~~~~l~~~GV~i~~~~~ 226 (479)
+++|||+|+.|+.+|..|.+.+.+++++++.+.... ..+.. ... + .+.+.++..+++++.+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 80 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK 80 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence 489999999999999999999999999977653110 00000 011 1 334445678999999999
Q ss_pred eEEEEEcCCCc-------EEEEEeCCCcEEeccEEEEecCCCCChhh-------------------h-------------
Q 011700 227 LSSFDVDSNGK-------VVAVNLRDGNRLPTDMVVVGIGIRPNTSL-------------------F------------- 267 (479)
Q Consensus 227 v~~i~~~~~g~-------v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l-------------------~------------- 267 (479)
+.+++. ..+. +......++.++.+|.+|+|+|.+|+... .
T Consensus 81 v~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG 159 (201)
T PF07992_consen 81 VVSIDP-ESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVG 159 (201)
T ss_dssp EEEEEE-STTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEES
T ss_pred cccccc-cccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCccccccccccccccccccccccccccccc
Confidence 999987 3332 11223455678999999999997755220 0
Q ss_pred ------hccccc-ccCcEEEcCcccCCCCCeEEEeeecccc
Q 011700 268 ------EGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFP 301 (479)
Q Consensus 268 ------~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~ 301 (479)
..++.. ++|++.||+++||+.|+|||+|||+..+
T Consensus 160 ~~~l~~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~ 200 (201)
T PF07992_consen 160 TEFLAEKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGIY 200 (201)
T ss_dssp TTTSTHHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEES
T ss_pred ccccccccccccccccccccccccccccccccccccccccC
Confidence 012334 5788999999999999999999999864
No 226
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.21 E-value=5.8e-06 Score=85.66 Aligned_cols=98 Identities=20% Similarity=0.338 Sum_probs=73.1
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH 84 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (479)
.+++|||||+.|+.+|..|+++|.+ |+++++.+... |.+. ........+.+++.
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l-------------------~~~~----~~~~~~l~~~l~~~ 226 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAE---VTIVEALPRIL-------------------PGED----KEISKLAERALKKR 226 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCCcC-------------------CcCC----HHHHHHHHHHHHHc
Confidence 5899999999999999999998876 99999875310 0000 01113345667889
Q ss_pred CcEEEeCceEEEEECCCcEE--EeCCC---cEEEeceEEeecCCCcccc
Q 011700 85 GIELVLGTRVKSADVRRKTL--VTATG---ETISYKILIIATGARALKL 128 (479)
Q Consensus 85 gv~~~~~~~v~~i~~~~~~v--~~~~g---~~~~~d~lviAtG~~~~~~ 128 (479)
|++++.++++.+++.+...+ .+.++ +++.+|.+|+|+|.+|...
T Consensus 227 gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~ 275 (462)
T PRK06416 227 GIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTE 275 (462)
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCC
Confidence 99999999999998765443 33444 6799999999999998654
No 227
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.21 E-value=4.2e-06 Score=87.51 Aligned_cols=38 Identities=16% Similarity=0.392 Sum_probs=34.6
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
|+.++||+|||||+.|+++|++|+++|++ |+|+|+++.
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~---V~LlEk~d~ 40 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGLK---VLLCEKDDL 40 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCc---EEEEECCCC
Confidence 45579999999999999999999999987 999999964
No 228
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.20 E-value=4.3e-05 Score=79.12 Aligned_cols=58 Identities=14% Similarity=0.200 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHh----CC--cEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700 204 PKIASYYEEYYKS----KG--VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 263 (479)
Q Consensus 204 ~~~~~~~~~~l~~----~G--V~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~ 263 (479)
..+...+.+.+++ .| ++++++++|++|+.. ++....|.+.+| ++.+|.||+|+|....
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~-~~~~~~V~T~~G-~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERS-NDSLYKIHTNRG-EIRARFVVVSACGYSL 274 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec-CCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence 3567777788887 77 889999999999873 344456777776 6999999999996543
No 229
>PLN02661 Putative thiazole synthesis
Probab=98.20 E-value=8.3e-06 Score=79.52 Aligned_cols=35 Identities=34% Similarity=0.381 Sum_probs=31.0
Q ss_pred cCeEEEECCchHHHHHHHHHHHc-CCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKR-GVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~-g~~~~~V~lie~~~~ 41 (479)
++||+|||||++|++||++|++. |++ |+|||+...
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~k---V~viEk~~~ 127 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVK---VAIIEQSVS 127 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCe---EEEEecCcc
Confidence 57999999999999999999975 565 999999864
No 230
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.20 E-value=7.3e-06 Score=82.15 Aligned_cols=97 Identities=21% Similarity=0.309 Sum_probs=72.5
Q ss_pred CEEEECCChHHHHHHHHHhhC---CCeEEEEeecCccccc-cC---------CHHHHHHHHHHHHhCCcEEEcCCceEEE
Q 011700 164 NAVVIGGGYIGMECAASLVIN---KINVTMVFPEAHCMAR-LF---------TPKIASYYEEYYKSKGVKFVKGTVLSSF 230 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~---g~~Vtlv~~~~~~l~~-~~---------~~~~~~~~~~~l~~~GV~i~~~~~v~~i 230 (479)
+++|||||+.|+.+|..+.+. +.+|+++++++...-. .+ ..++...+.+.+++.||+++.+ ++.++
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI 79 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence 589999999999999999643 6899999988653211 11 1223334556677889999876 68888
Q ss_pred EEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700 231 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 231 ~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~ 265 (479)
+.+ .+ .|.+.+|+++.+|.+|+|+|.+|+..
T Consensus 80 d~~--~~--~V~~~~g~~~~yD~LviAtG~~~~~~ 110 (364)
T TIGR03169 80 DPD--RR--KVLLANRPPLSYDVLSLDVGSTTPLS 110 (364)
T ss_pred ecc--cC--EEEECCCCcccccEEEEccCCCCCCC
Confidence 762 22 47778888999999999999988754
No 231
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.20 E-value=4e-06 Score=88.44 Aligned_cols=35 Identities=20% Similarity=0.384 Sum_probs=32.5
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
.+||+|||||..|+++|++|+++|++ |+|||++..
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~~---V~LlEk~d~ 40 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGLR---CILVERHDI 40 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCe---EEEEECCCC
Confidence 58999999999999999999999987 999999764
No 232
>PRK06116 glutathione reductase; Validated
Probab=98.20 E-value=7.1e-06 Score=84.72 Aligned_cols=99 Identities=20% Similarity=0.159 Sum_probs=74.4
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||+|+.|+..|..|++.|.+ |+++++.+... +.+. ........+.+++
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l-------------------~~~~----~~~~~~l~~~L~~ 220 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSE---THLFVRGDAPL-------------------RGFD----PDIRETLVEEMEK 220 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCCc-------------------cccC----HHHHHHHHHHHHH
Confidence 36899999999999999999998876 99998875310 0000 0111334566788
Q ss_pred cCcEEEeCceEEEEECCC---cEEEeCCCcEEEeceEEeecCCCcccc
Q 011700 84 HGIELVLGTRVKSADVRR---KTLVTATGETISYKILIIATGARALKL 128 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~---~~v~~~~g~~~~~d~lviAtG~~~~~~ 128 (479)
.|++++.++.|.+++.+. ..+.+.+|+++.+|.+|+|+|.+|...
T Consensus 221 ~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~ 268 (450)
T PRK06116 221 KGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTD 268 (450)
T ss_pred CCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCC
Confidence 999999999999997542 245666788899999999999988654
No 233
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.20 E-value=9.4e-06 Score=83.06 Aligned_cols=102 Identities=25% Similarity=0.371 Sum_probs=72.6
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccC---------C-HHHHHHHHHHHHhCCcEEEcCCceEEE
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLF---------T-PKIASYYEEYYKSKGVKFVKGTVLSSF 230 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~---------~-~~~~~~~~~~l~~~GV~i~~~~~v~~i 230 (479)
..+++||||||+.|+.+|..|.+.+.+||++++++.+.-... + .++...+.+.++..+++++.+ +|++|
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~V~~I 87 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRA-VVYDV 87 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEE-EEEEE
Confidence 457899999999999999999777789999998876432111 1 223334556667778998765 68899
Q ss_pred EEcCCCcEEEEEe--------CCCcEEeccEEEEecCCCCChh
Q 011700 231 DVDSNGKVVAVNL--------RDGNRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 231 ~~~~~g~v~~v~~--------~~g~~i~~D~Vi~a~G~~p~~~ 265 (479)
+.+ +..+ .+.. .+++++++|.+++|+|.+|+..
T Consensus 88 d~~-~~~v-~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~ 128 (424)
T PTZ00318 88 DFE-EKRV-KCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTF 128 (424)
T ss_pred EcC-CCEE-EEecccccccccCCceEecCCEEEECCCcccCCC
Confidence 862 3322 2211 4567899999999999987653
No 234
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.19 E-value=1.8e-06 Score=77.39 Aligned_cols=35 Identities=29% Similarity=0.383 Sum_probs=29.8
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
++||+||||||+||+||++|++.|++ |++||++..
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~k---V~v~E~~~~ 51 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLK---VAVIERKLS 51 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS----EEEEESSSS
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCe---EEEEecCCC
Confidence 58999999999999999999999998 999999854
No 235
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.19 E-value=7.5e-06 Score=84.38 Aligned_cols=98 Identities=21% Similarity=0.249 Sum_probs=73.2
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||+|+.|+.+|..+++.|.+ |+++++.+... +.+. .+......+.+++
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~---Vtli~~~~~~l-------------------~~~d----~~~~~~l~~~l~~ 219 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQ---VTLIYRGELIL-------------------RGFD----DDMRALLARNMEG 219 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEEeCCCCC-------------------cccC----HHHHHHHHHHHHH
Confidence 35799999999999999999998876 99999875310 0000 0111234566778
Q ss_pred cCcEEEeCceEEEEECCC--cEEEeCCCcEEEeceEEeecCCCccc
Q 011700 84 HGIELVLGTRVKSADVRR--KTLVTATGETISYKILIIATGARALK 127 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~--~~v~~~~g~~~~~d~lviAtG~~~~~ 127 (479)
.|++++.++.+.+++.++ ..+.+.+++++.+|.+|+|+|.+|..
T Consensus 220 ~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~ 265 (446)
T TIGR01424 220 RGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNT 265 (446)
T ss_pred CCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCC
Confidence 999999999999987533 34555677889999999999998864
No 236
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.19 E-value=7.7e-06 Score=84.08 Aligned_cols=95 Identities=14% Similarity=0.182 Sum_probs=73.4
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH 84 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (479)
.+++|||||+.|+..|..|++.|.+ |+++++.+... +. + ..+......+.+++.
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~---Vtli~~~~~l~---~~----------------~----d~~~~~~l~~~l~~~ 202 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLH---PTLIHRSDKIN---KL----------------M----DADMNQPILDELDKR 202 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCc---EEEEecccccc---hh----------------c----CHHHHHHHHHHHHhc
Confidence 5899999999999999999998876 99999875310 00 0 001113345667889
Q ss_pred CcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCccc
Q 011700 85 GIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALK 127 (479)
Q Consensus 85 gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~ 127 (479)
||+++.++.+.+++. ..+.+.+++++.+|.+++|+|.+|..
T Consensus 203 gI~i~~~~~v~~i~~--~~v~~~~g~~~~~D~vl~a~G~~pn~ 243 (438)
T PRK13512 203 EIPYRLNEEIDAING--NEVTFKSGKVEHYDMIIEGVGTHPNS 243 (438)
T ss_pred CCEEEECCeEEEEeC--CEEEECCCCEEEeCEEEECcCCCcCh
Confidence 999999999999874 46777778889999999999999864
No 237
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.18 E-value=4.7e-06 Score=78.83 Aligned_cols=47 Identities=23% Similarity=0.244 Sum_probs=37.7
Q ss_pred HhHHHHcCcEEEeCceEEEEECC-----CcEEEeCCCcEEEeceEEeecCCC
Q 011700 78 PKWYNEHGIELVLGTRVKSADVR-----RKTLVTATGETISYKILIIATGAR 124 (479)
Q Consensus 78 ~~~~~~~gv~~~~~~~v~~i~~~-----~~~v~~~~g~~~~~d~lviAtG~~ 124 (479)
+..+++.|+.++.+.+|..+... ...|.+.+|..+.++++|+++|+.
T Consensus 160 ~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaW 211 (399)
T KOG2820|consen 160 QDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAW 211 (399)
T ss_pred HHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHH
Confidence 34566789999999888877632 245778888889999999999976
No 238
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.17 E-value=1e-05 Score=82.38 Aligned_cols=100 Identities=22% Similarity=0.312 Sum_probs=76.3
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
+.+++|||||+-|+..|..++++|.+ |||+|+.+.. +|.+. .+....+.+.+++
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~---VTiie~~~~i-------------------Lp~~D----~ei~~~~~~~l~~ 226 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSK---VTVVERGDRI-------------------LPGED----PEISKELTKQLEK 226 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCC-------------------CCcCC----HHHHHHHHHHHHh
Confidence 46799999999999999999999988 9999998641 11111 1122345566777
Q ss_pred cCcEEEeCceEEEEECCCc--EEEeCCCc--EEEeceEEeecCCCccccc
Q 011700 84 HGIELVLGTRVKSADVRRK--TLVTATGE--TISYKILIIATGARALKLE 129 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~--~v~~~~g~--~~~~d~lviAtG~~~~~~~ 129 (479)
.+++++.++.+..++..+. .+.+++++ ++.+|++++|+|-+|+...
T Consensus 227 ~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~ 276 (454)
T COG1249 227 GGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDG 276 (454)
T ss_pred CCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCC
Confidence 7899999999998876654 45566665 7899999999999987653
No 239
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.16 E-value=9.8e-06 Score=83.98 Aligned_cols=99 Identities=16% Similarity=0.177 Sum_probs=74.0
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||+.|+..|..+++.|.+ |+++++.+... +.+. .+....+.+.+++
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l-------------------~~~d----~~~~~~l~~~l~~ 228 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVK---VTLINTRDRLL-------------------SFLD----DEISDALSYHLRD 228 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCcC-------------------CcCC----HHHHHHHHHHHHH
Confidence 46899999999999999999998876 99999875310 0000 0111334556778
Q ss_pred cCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCcccc
Q 011700 84 HGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALKL 128 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~~ 128 (479)
.|++++.++.+.+++.++. .+.+.+++++++|.+++|+|.+|...
T Consensus 229 ~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 229 SGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTD 275 (461)
T ss_pred cCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCcccc
Confidence 8999999999999875433 34556778899999999999998653
No 240
>PRK06996 hypothetical protein; Provisional
Probab=98.15 E-value=8.6e-06 Score=82.71 Aligned_cols=119 Identities=19% Similarity=0.218 Sum_probs=67.6
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCC-CCCcEEEEcCCCCCC-CC--CC-cc---------cccccCCCCCCCC-------
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGV-PPGELCIISEEPVAP-YE--RP-AL---------SKGYLLPEAPARL------- 62 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~-~~~~V~lie~~~~~~-~~--~~-~l---------~~~~~~~~~~~~~------- 62 (479)
.+||+||||||+|+++|..|++.|. +..+|+|+|+.+... .. +. .+ .-+.+ ......+
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~-~~~~~~~~~~~~~~ 89 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAW-PADATPIEHIHVSQ 89 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCc-hhcCCcccEEEEec
Confidence 4799999999999999999999873 213499999975311 10 00 00 00000 0000000
Q ss_pred ----------------CCcccccC-CcccCCCHhHHHHcCcEEEeCceEEEEECCCcE--EEeCCC---cEEEeceEEee
Q 011700 63 ----------------PSFHTCVG-ANEERLTPKWYNEHGIELVLGTRVKSADVRRKT--LVTATG---ETISYKILIIA 120 (479)
Q Consensus 63 ----------------~~~~~~~~-~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~--v~~~~g---~~~~~d~lviA 120 (479)
+.+..... ......+.+.+.+.++++..++++..++.+... +.+.++ +++++|.||-|
T Consensus 90 ~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgA 169 (398)
T PRK06996 90 RGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQA 169 (398)
T ss_pred CCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEEC
Confidence 00000000 000111223345668999999999888655543 444433 58999999999
Q ss_pred cCC
Q 011700 121 TGA 123 (479)
Q Consensus 121 tG~ 123 (479)
.|.
T Consensus 170 DG~ 172 (398)
T PRK06996 170 EGG 172 (398)
T ss_pred CCC
Confidence 995
No 241
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.15 E-value=2.4e-06 Score=85.80 Aligned_cols=120 Identities=23% Similarity=0.336 Sum_probs=70.4
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc---c---cccccCCC------------CCCCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA---L---SKGYLLPE------------APARL 62 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~---l---~~~~~~~~------------~~~~~ 62 (479)
|++.|||+|||||.||..||..++|.|.+ +.|+.-+.......+| + .|+.+..+ +...+
T Consensus 1 ~~~~~DVIVIGgGHAG~EAA~AaARmG~k---tlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~I 77 (621)
T COG0445 1 MPKEYDVIVIGGGHAGVEAALAAARMGAK---TLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGI 77 (621)
T ss_pred CCCCCceEEECCCccchHHHHhhhccCCe---EEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCC
Confidence 66779999999999999999999999998 6777666542211111 1 12211100 00000
Q ss_pred CC--cccccCCc--------ccCCCHhHHH-----HcCcEEEeCceEEEEECCCc----EEEeCCCcEEEeceEEeecCC
Q 011700 63 PS--FHTCVGAN--------EERLTPKWYN-----EHGIELVLGTRVKSADVRRK----TLVTATGETISYKILIIATGA 123 (479)
Q Consensus 63 ~~--~~~~~~~~--------~~~~~~~~~~-----~~gv~~~~~~~v~~i~~~~~----~v~~~~g~~~~~d~lviAtG~ 123 (479)
.. +....|.. +...+..+++ ..|++++.+ .|.++..++. -|.+.+|..+.++.|||+||.
T Consensus 78 Q~r~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT 156 (621)
T COG0445 78 QFRMLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT 156 (621)
T ss_pred chhhccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence 00 00001110 0111222222 358888887 6776665333 356788999999999999996
Q ss_pred C
Q 011700 124 R 124 (479)
Q Consensus 124 ~ 124 (479)
-
T Consensus 157 F 157 (621)
T COG0445 157 F 157 (621)
T ss_pred c
Confidence 5
No 242
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.14 E-value=1.5e-05 Score=85.48 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=30.7
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
++||||||+|.||++||.++++.|.+ |+|+|+..
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~---VilieK~~ 68 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYN---VKVFCYQD 68 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCc---EEEEecCC
Confidence 47999999999999999999998887 89999754
No 243
>PRK07538 hypothetical protein; Provisional
Probab=98.14 E-value=9.5e-06 Score=82.81 Aligned_cols=34 Identities=26% Similarity=0.553 Sum_probs=31.3
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
+||+||||||+|+++|..|++.|++ |+|+|+.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIE---VVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCc---EEEEEcCCc
Confidence 3899999999999999999999987 999999864
No 244
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.14 E-value=8e-06 Score=89.72 Aligned_cols=97 Identities=22% Similarity=0.401 Sum_probs=73.6
Q ss_pred EEEECCChHHHHHHHHHhhC---CCeEEEEeecCccc------cccCC-----HHHHHHHHHHHHhCCcEEEcCCceEEE
Q 011700 165 AVVIGGGYIGMECAASLVIN---KINVTMVFPEAHCM------ARLFT-----PKIASYYEEYYKSKGVKFVKGTVLSSF 230 (479)
Q Consensus 165 vvVIGgG~~g~E~A~~l~~~---g~~Vtlv~~~~~~l------~~~~~-----~~~~~~~~~~l~~~GV~i~~~~~v~~i 230 (479)
++|||+|+.|+.+|..|.++ +.+||++.+.+++. +..+. +++.....+++++.||++++++.|++|
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 58999999999999998775 46899999887642 11111 122222356778899999999999999
Q ss_pred EEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700 231 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 231 ~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~ 265 (479)
+.. .+ .|.+.+|+++++|.+|+|||.+|+..
T Consensus 81 d~~--~k--~V~~~~g~~~~yD~LVlATGs~p~~p 111 (785)
T TIGR02374 81 DTD--QK--QVITDAGRTLSYDKLILATGSYPFIL 111 (785)
T ss_pred ECC--CC--EEEECCCcEeeCCEEEECCCCCcCCC
Confidence 762 22 46778888999999999999988764
No 245
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.13 E-value=1.7e-05 Score=85.08 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=33.8
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHc-CCCCCcEEEEcCCCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKR-GVPPGELCIISEEPV 41 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~-g~~~~~V~lie~~~~ 41 (479)
|.+++||+||||||+||++|..|+++ |.+ |+|||+.+.
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~---v~IiE~~~~ 67 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDIT---TRIVERKPG 67 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCc---EEEEEcCCC
Confidence 45678999999999999999999995 887 899998864
No 246
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.13 E-value=1.4e-05 Score=82.30 Aligned_cols=33 Identities=36% Similarity=0.498 Sum_probs=30.7
Q ss_pred eEEEECCchHHHHHHHHHHHcC-CCCCcEEEEcCCCC
Q 011700 6 VYVIVGGGVAAGYAALEFTKRG-VPPGELCIISEEPV 41 (479)
Q Consensus 6 dvvIIGgG~aGl~aA~~l~~~g-~~~~~V~lie~~~~ 41 (479)
||||||+|.||++||+++++.| .+ |+|+|+.+.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~---V~vlEk~~~ 34 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAAN---VVLLEKMPV 34 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCcc---EEEEecCCC
Confidence 7999999999999999999998 76 999999865
No 247
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.13 E-value=1.1e-05 Score=83.60 Aligned_cols=98 Identities=22% Similarity=0.287 Sum_probs=71.9
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH 84 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (479)
.+++|||+|+.|+.+|..|+++|.+ |+++++.+... |.+. .+......+.+++.
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l-------------------~~~d----~~~~~~l~~~l~~~ 220 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSE---VTILQRSDRLL-------------------PREE----PEISAAVEEALAEE 220 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCCcCC-------------------CccC----HHHHHHHHHHHHHc
Confidence 6899999999999999999998876 99999875310 0000 00112345667788
Q ss_pred CcEEEeCceEEEEECCCc--EEEeC---CCcEEEeceEEeecCCCcccc
Q 011700 85 GIELVLGTRVKSADVRRK--TLVTA---TGETISYKILIIATGARALKL 128 (479)
Q Consensus 85 gv~~~~~~~v~~i~~~~~--~v~~~---~g~~~~~d~lviAtG~~~~~~ 128 (479)
||+++.+++|..++.++. .+.+. +++++++|.+|+|+|.+|...
T Consensus 221 gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~ 269 (463)
T TIGR02053 221 GIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTD 269 (463)
T ss_pred CCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCC
Confidence 999999999998876543 33332 236799999999999998754
No 248
>PRK06370 mercuric reductase; Validated
Probab=98.13 E-value=1.2e-05 Score=83.33 Aligned_cols=99 Identities=17% Similarity=0.198 Sum_probs=72.3
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... +.+. ........+.+++
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~---Vtli~~~~~~l-------------------~~~~----~~~~~~l~~~l~~ 224 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSE---VTVIERGPRLL-------------------PRED----EDVAAAVREILER 224 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCCCC-------------------cccC----HHHHHHHHHHHHh
Confidence 36899999999999999999998876 99999875310 0000 0011234566778
Q ss_pred cCcEEEeCceEEEEECCCc--EEEe---CCCcEEEeceEEeecCCCcccc
Q 011700 84 HGIELVLGTRVKSADVRRK--TLVT---ATGETISYKILIIATGARALKL 128 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~--~v~~---~~g~~~~~d~lviAtG~~~~~~ 128 (479)
.|++++.++.+.+++.++. .+.+ .++.++.+|.||+|+|.+|...
T Consensus 225 ~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 225 EGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTD 274 (463)
T ss_pred CCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCC
Confidence 9999999999999986543 2333 2345799999999999998753
No 249
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.12 E-value=7.6e-06 Score=81.63 Aligned_cols=103 Identities=16% Similarity=0.124 Sum_probs=69.4
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc--------cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEE
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 232 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~--------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~ 232 (479)
.+++++|||+|+.|+++|..|.+.|.+|+++++.+.+... .++.+......+.+.+.|++++.++.+..+..
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~~~ 96 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCGEP 96 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeeccc
Confidence 4789999999999999999999999999999988765321 12333334445566777999999987765432
Q ss_pred --cCCCcEEEEEe--CCCcEEeccEEEEecCCC-CC
Q 011700 233 --DSNGKVVAVNL--RDGNRLPTDMVVVGIGIR-PN 263 (479)
Q Consensus 233 --~~~g~v~~v~~--~~g~~i~~D~Vi~a~G~~-p~ 263 (479)
..++....... .++..+.+|.|++|+|.. |.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~ 132 (352)
T PRK12770 97 LHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSR 132 (352)
T ss_pred cccccccccccccCCHHHHHhhCCEEEEEeCCCCCC
Confidence 00111111111 112247899999999984 43
No 250
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.12 E-value=1e-05 Score=81.93 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=32.1
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
+||+||||||+|+++|..|++.|++ |+|+|+.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~---v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGID---NVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCC---EEEEECCCC
Confidence 8999999999999999999999998 999999874
No 251
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.11 E-value=9.3e-06 Score=86.94 Aligned_cols=35 Identities=26% Similarity=0.466 Sum_probs=32.0
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
++||||||+|.||++||+.+++.|.+ |+|||+.+.
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~---V~lieK~~~ 42 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLR---VAVVCKSLF 42 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCC---EEEEeccCC
Confidence 47999999999999999999998887 999999864
No 252
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.11 E-value=1.6e-05 Score=80.51 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=32.4
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
++||+||||||+|+++|..|++.|++ |+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~---v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGID---SVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCC---EEEEEcCCc
Confidence 38999999999999999999999987 999999874
No 253
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.10 E-value=1.4e-05 Score=85.04 Aligned_cols=37 Identities=30% Similarity=0.319 Sum_probs=31.2
Q ss_pred CCC-cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 1 MGR-AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 1 M~~-~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
||. ++||||||+|.||++||+++++. .+ |+|+||.+.
T Consensus 1 ~~~~~~DVlVIG~G~AGl~AAl~aa~~-~~---VilleK~~~ 38 (583)
T PRK08205 1 MQQHRYDVVIVGAGGAGMRAAIEAGPR-AR---TAVLTKLYP 38 (583)
T ss_pred CcceeccEEEECccHHHHHHHHHHHhC-CC---EEEEeCCCC
Confidence 444 68999999999999999999874 44 999999754
No 254
>PRK07846 mycothione reductase; Reviewed
Probab=98.10 E-value=1.7e-05 Score=81.72 Aligned_cols=98 Identities=22% Similarity=0.259 Sum_probs=71.0
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... +.+. .+....+.+ +.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~---Vtli~~~~~ll-------------------~~~d----~~~~~~l~~-l~~ 218 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVR---VTVVNRSGRLL-------------------RHLD----DDISERFTE-LAS 218 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCccc-------------------cccC----HHHHHHHHH-HHh
Confidence 36899999999999999999998876 99999875311 0000 000011222 235
Q ss_pred cCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCcccc
Q 011700 84 HGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALKL 128 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~~ 128 (479)
.+++++.++++.+++.++. .+.+.+++++.+|.|++|+|.+|...
T Consensus 219 ~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~ 265 (451)
T PRK07846 219 KRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGD 265 (451)
T ss_pred cCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCcc
Confidence 6899999999999986544 35556778899999999999998653
No 255
>PRK07121 hypothetical protein; Validated
Probab=98.09 E-value=8.2e-05 Score=77.72 Aligned_cols=66 Identities=23% Similarity=0.283 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC-Cc--EEec-cEEEEecCC-CCChhhhh
Q 011700 203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-GN--RLPT-DMVVVGIGI-RPNTSLFE 268 (479)
Q Consensus 203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~-g~--~i~~-D~Vi~a~G~-~p~~~l~~ 268 (479)
...+.+.+.+.+++.|+++++++.++++..++++++..+...+ ++ .+.+ +.||+|+|- ..|.++++
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em~~ 246 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAMNREMVA 246 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHHHH
Confidence 3557777888888999999999999999875456777776543 32 5778 999999994 45555554
No 256
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.09 E-value=1.4e-05 Score=83.00 Aligned_cols=99 Identities=17% Similarity=0.278 Sum_probs=72.0
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... +.. + .+......+.+++
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l---~~~-------------d-------~~~~~~~~~~l~~ 236 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAE---VTILEALPAFL---AAA-------------D-------EQVAKEAAKAFTK 236 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEeCCCccC---CcC-------------C-------HHHHHHHHHHHHH
Confidence 36899999999999999999998876 99999875310 000 0 0011234556778
Q ss_pred cCcEEEeCceEEEEECCCcE--EEeCC--C--cEEEeceEEeecCCCcccc
Q 011700 84 HGIELVLGTRVKSADVRRKT--LVTAT--G--ETISYKILIIATGARALKL 128 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~--v~~~~--g--~~~~~d~lviAtG~~~~~~ 128 (479)
.|++++.++.|.+++.+... +.+.+ + +++++|.|++|+|.+|...
T Consensus 237 ~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~ 287 (475)
T PRK06327 237 QGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTD 287 (475)
T ss_pred cCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCC
Confidence 89999999999999866443 33333 3 4699999999999998754
No 257
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.09 E-value=1.5e-05 Score=82.62 Aligned_cols=99 Identities=23% Similarity=0.285 Sum_probs=72.3
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||+.|+.+|..|++.|.+ |+++++.+.. + |.+. ........+.+++
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~---Vtlv~~~~~~-----------l--------~~~d----~~~~~~l~~~l~~ 225 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVD---VTIVEFLDRA-----------L--------PNED----AEVSKEIAKQYKK 225 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEecCCCc-----------C--------CccC----HHHHHHHHHHHHH
Confidence 35899999999999999999998876 8999876421 0 0000 0011334567788
Q ss_pred cCcEEEeCceEEEEECCCcE--EEeC--CC--cEEEeceEEeecCCCcccc
Q 011700 84 HGIELVLGTRVKSADVRRKT--LVTA--TG--ETISYKILIIATGARALKL 128 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~--v~~~--~g--~~~~~d~lviAtG~~~~~~ 128 (479)
.||+++.++.|.+++.++.. +.+. +| +++++|.||+|+|.+|...
T Consensus 226 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 226 LGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVE 276 (466)
T ss_pred CCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCC
Confidence 99999999999999765543 3332 45 4799999999999988653
No 258
>PRK07236 hypothetical protein; Provisional
Probab=98.09 E-value=2.1e-05 Score=79.56 Aligned_cols=103 Identities=24% Similarity=0.350 Sum_probs=74.3
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc-----cCCHHHHHHHH------------------------
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----LFTPKIASYYE------------------------ 211 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----~~~~~~~~~~~------------------------ 211 (479)
...+|+|||+|+.|+.+|..|++.|.+|+++++.+..... .+.+...+.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g 84 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDG 84 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCC
Confidence 3578999999999999999999999999999988643221 01232222221
Q ss_pred -------------------HHHHh--CCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700 212 -------------------EYYKS--KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 212 -------------------~~l~~--~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~ 265 (479)
+.|.+ .+++++.++++++++.+ ++. ..+.+.+|+++.+|.||.|-|......
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~-~~~-v~v~~~~g~~~~ad~vIgADG~~S~vR 157 (386)
T PRK07236 85 RVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQD-GDR-VTARFADGRRETADLLVGADGGRSTVR 157 (386)
T ss_pred CEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEec-CCe-EEEEECCCCEEEeCEEEECCCCCchHH
Confidence 11111 13568899999999874 333 357889999999999999999876553
No 259
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.09 E-value=4.7e-06 Score=85.20 Aligned_cols=33 Identities=30% Similarity=0.527 Sum_probs=29.6
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
||||||+|.||++||++|+++|.+ |+|||+.+.
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~---V~lvek~~~ 33 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAK---VLLVEKGPR 33 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT----EEEEESSSG
T ss_pred CEEEECCCHHHHHHHHHHhhhcCe---EEEEEeecc
Confidence 899999999999999999999987 999999976
No 260
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.09 E-value=1.7e-05 Score=87.43 Aligned_cols=100 Identities=18% Similarity=0.354 Sum_probs=75.3
Q ss_pred CCCEEEECCChHHHHHHHHHhhC----CCeEEEEeecCccc------cccC----CHHHHHHHHHHHHhCCcEEEcCCce
Q 011700 162 GGNAVVIGGGYIGMECAASLVIN----KINVTMVFPEAHCM------ARLF----TPKIASYYEEYYKSKGVKFVKGTVL 227 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~----g~~Vtlv~~~~~~l------~~~~----~~~~~~~~~~~l~~~GV~i~~~~~v 227 (479)
.++++|||+|+.|+.+|..|.+. +.+||++.+.+++. +..+ ..++.....+.+++.||+++.++.+
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V 82 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERA 82 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEE
Confidence 36899999999999999999764 47899999887642 1111 1122222345678899999999999
Q ss_pred EEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700 228 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 228 ~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~ 265 (479)
.+++. +.+ .|.+.+|+++++|.+|+|||.+|...
T Consensus 83 ~~Id~--~~~--~V~~~~G~~i~yD~LVIATGs~p~~p 116 (847)
T PRK14989 83 ITINR--QEK--VIHSSAGRTVFYDKLIMATGSYPWIP 116 (847)
T ss_pred EEEeC--CCc--EEEECCCcEEECCEEEECCCCCcCCC
Confidence 99875 222 46678888999999999999988754
No 261
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.08 E-value=1.7e-05 Score=81.81 Aligned_cols=99 Identities=18% Similarity=0.111 Sum_probs=73.3
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||+.|+..|..|++.|.+ |+++++.+... +.+. ........+.+++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~---Vtli~~~~~il-------------------~~~d----~~~~~~~~~~l~~ 219 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSE---THLVIRHERVL-------------------RSFD----SMISETITEEYEK 219 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCCC-------------------cccC----HHHHHHHHHHHHH
Confidence 36899999999999999999998876 99999875310 0000 0011334566788
Q ss_pred cCcEEEeCceEEEEECCC---cEEEeCCC-cEEEeceEEeecCCCcccc
Q 011700 84 HGIELVLGTRVKSADVRR---KTLVTATG-ETISYKILIIATGARALKL 128 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~---~~v~~~~g-~~~~~d~lviAtG~~~~~~ 128 (479)
.||+++.++.+.+++.+. ..+.+.++ +.+.+|.+++|+|.+|...
T Consensus 220 ~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 220 EGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred cCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 999999999999987542 24555666 5799999999999998753
No 262
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.08 E-value=1.7e-05 Score=78.99 Aligned_cols=99 Identities=26% Similarity=0.419 Sum_probs=77.4
Q ss_pred CCCEEEECCChHHHHHHHHHhhCC--CeEEEEeecCccccccC----------CHHHHHHHHHHHHhCC-cEEEcCCceE
Q 011700 162 GGNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCMARLF----------TPKIASYYEEYYKSKG-VKFVKGTVLS 228 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l~~~~----------~~~~~~~~~~~l~~~G-V~i~~~~~v~ 228 (479)
.+++||||||+-|+..+..|.+.- .+||++++.+..+-..+ +.++...+.+.++..+ |+++.+ +|+
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~ 81 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT 81 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEE-EEE
Confidence 578999999999999999999874 88999999876542211 2345556777787556 998876 488
Q ss_pred EEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700 229 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 229 ~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~ 265 (479)
+|+. +.+ .|.+.++.++++|.+++++|..+++.
T Consensus 82 ~ID~--~~k--~V~~~~~~~i~YD~LVvalGs~~~~f 114 (405)
T COG1252 82 DIDR--DAK--KVTLADLGEISYDYLVVALGSETNYF 114 (405)
T ss_pred EEcc--cCC--EEEeCCCccccccEEEEecCCcCCcC
Confidence 8876 332 57778878999999999999999875
No 263
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.08 E-value=1.6e-05 Score=84.74 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=31.5
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
++||||||+|.||++||+++++.|.+ |+|+||...
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~---V~lveK~~~ 46 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAEAGLK---TACITKVFP 46 (598)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCc---EEEEEccCC
Confidence 47999999999999999999998876 899999753
No 264
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.08 E-value=1.2e-05 Score=89.55 Aligned_cols=93 Identities=23% Similarity=0.203 Sum_probs=72.8
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc-------c-cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEE
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------R-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 232 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~ 232 (479)
.+++|+|||+|+.|+.+|..|++.|.+||++++.+.+.. . -++.++.+...+.+++.||+|++++.+..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~--- 381 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGK--- 381 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEecc---
Confidence 479999999999999999999999999999998764321 1 13567777777888999999998875421
Q ss_pred cCCCcEEEEEeCCCcEEeccEEEEecCCC-CC
Q 011700 233 DSNGKVVAVNLRDGNRLPTDMVVVGIGIR-PN 263 (479)
Q Consensus 233 ~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~-p~ 263 (479)
.+.+.+.....+|.|++|+|.. |.
T Consensus 382 -------dit~~~l~~~~yDAV~LAtGA~~pr 406 (944)
T PRK12779 382 -------TATLEDLKAAGFWKIFVGTGAGLPT 406 (944)
T ss_pred -------EEeHHHhccccCCEEEEeCCCCCCC
Confidence 2445555556799999999984 54
No 265
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.07 E-value=1e-05 Score=83.73 Aligned_cols=90 Identities=23% Similarity=0.292 Sum_probs=70.0
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc-------cc-cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEE
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 232 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~ 232 (479)
.+++++|||+|+.|+++|..|++.|.+|+++++.+.+. +. ..+.++.+...+.+++.||+++.++.+..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~--- 215 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR--- 215 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC---
Confidence 46899999999999999999999999999999887642 11 13567777778888999999999886521
Q ss_pred cCCCcEEEEEeCCCcEEeccEEEEecCCC
Q 011700 233 DSNGKVVAVNLRDGNRLPTDMVVVGIGIR 261 (479)
Q Consensus 233 ~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~ 261 (479)
.+.+.+. .+.+|.|++|+|..
T Consensus 216 -------~v~~~~~-~~~~d~vvlAtGa~ 236 (457)
T PRK11749 216 -------DITLDEL-RAGYDAVFIGTGAG 236 (457)
T ss_pred -------ccCHHHH-HhhCCEEEEccCCC
Confidence 1222222 36799999999985
No 266
>PRK10262 thioredoxin reductase; Provisional
Probab=98.07 E-value=0.00011 Score=72.36 Aligned_cols=101 Identities=11% Similarity=0.159 Sum_probs=71.4
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecC---cc--------ccc----cCCHHHHHHHHHHHHhCCcEEEcCC
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA---HC--------MAR----LFTPKIASYYEEYYKSKGVKFVKGT 225 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~---~~--------l~~----~~~~~~~~~~~~~l~~~GV~i~~~~ 225 (479)
..++++|||+|+.|+.+|..+.++|.++++++... .+ ++. ...+++.+.+.+.....+++++.+
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD- 83 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-
Confidence 46889999999999999999999999998886431 10 011 123456777777777888887776
Q ss_pred ceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700 226 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 226 ~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~ 265 (479)
.+..++. .++. ..+...+ ..+.+|.||+|+|..|+..
T Consensus 84 ~v~~v~~-~~~~-~~v~~~~-~~~~~d~vilAtG~~~~~~ 120 (321)
T PRK10262 84 HINKVDL-QNRP-FRLTGDS-GEYTCDALIIATGASARYL 120 (321)
T ss_pred EEEEEEe-cCCe-EEEEecC-CEEEECEEEECCCCCCCCC
Confidence 4667765 2332 2343333 4789999999999988643
No 267
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.06 E-value=5.3e-05 Score=73.22 Aligned_cols=98 Identities=18% Similarity=0.268 Sum_probs=73.9
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc---------------------------------------c----
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA---------------------------------------R---- 200 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------------~---- 200 (479)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.... .
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE 81 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence 489999999999999999999999999998753210 0
Q ss_pred -----cC-CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC-CCcEEeccEEEEecCCCCC
Q 011700 201 -----LF-TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DGNRLPTDMVVVGIGIRPN 263 (479)
Q Consensus 201 -----~~-~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~-~g~~i~~D~Vi~a~G~~p~ 263 (479)
.+ ..++.+.+.+.+++.|++++.++++++++.++ +.+ .+.+. ++.++.+|.||.|.|....
T Consensus 82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~-~~~-~~~~~~~~~~~~a~~vv~a~G~~s~ 149 (295)
T TIGR02032 82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHD-DRV-VVIVRGGEGTVTAKIVIGADGSRSI 149 (295)
T ss_pred CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeC-CEE-EEEEcCccEEEEeCEEEECCCcchH
Confidence 01 13455667777888999999999999987633 333 34334 3468999999999997743
No 268
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.06 E-value=2.2e-05 Score=86.44 Aligned_cols=92 Identities=28% Similarity=0.287 Sum_probs=69.0
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc-------cc-cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEE
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 232 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~ 232 (479)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. |. .++.+..+.-.+.+++.||++++++.+ .+..
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di~l 616 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DLTV 616 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EEEh
Confidence 46899999999999999999999999999999876532 11 124455555567788899999999866 2221
Q ss_pred cCCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700 233 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 264 (479)
Q Consensus 233 ~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~ 264 (479)
.+.+...+|.|++|||.++..
T Consensus 617 -----------e~L~~~gYDaVILATGA~~~~ 637 (1019)
T PRK09853 617 -----------EQLKNEGYDYVVVAIGADKNG 637 (1019)
T ss_pred -----------hhheeccCCEEEECcCCCCCC
Confidence 222345689999999987643
No 269
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.06 E-value=2e-05 Score=81.64 Aligned_cols=98 Identities=18% Similarity=0.301 Sum_probs=73.3
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH 84 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (479)
.+++|||+|+.|+..|..|++.|.+ |+++++.+... +.+. ........+.+++.
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~---Vtli~~~~~~l-------------------~~~d----~~~~~~l~~~L~~~ 231 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVK---VTLVSSRDRVL-------------------PGED----ADAAEVLEEVFARR 231 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCcCC-------------------CCCC----HHHHHHHHHHHHHC
Confidence 5799999999999999999998876 99999875310 0000 00112345677889
Q ss_pred CcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCcccc
Q 011700 85 GIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALKL 128 (479)
Q Consensus 85 gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~~ 128 (479)
||+++.++++.+++.++. .+.+.+++++.+|.+++|+|.+|...
T Consensus 232 gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~ 277 (466)
T PRK07845 232 GMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTA 277 (466)
T ss_pred CcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCC
Confidence 999999999998864433 34556788899999999999998754
No 270
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.05 E-value=4.2e-05 Score=75.79 Aligned_cols=95 Identities=24% Similarity=0.345 Sum_probs=69.8
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeec-Cccc--------------------------------------------
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPE-AHCM-------------------------------------------- 198 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~~l-------------------------------------------- 198 (479)
.|+|||+|..|+|.|..+++.|.+|.++... +.+.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 3899999999999999999999999999432 1110
Q ss_pred --cc------cCCH-HHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC
Q 011700 199 --AR------LFTP-KIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI 260 (479)
Q Consensus 199 --~~------~~~~-~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~ 260 (479)
+. ..|. ...+.+.+.+++ .+++++ ..+|+++.. +++++..|.+.+|+++.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 00 1222 345556666766 689987 457999987 678999999999999999999999998
No 271
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.04 E-value=2.1e-05 Score=79.97 Aligned_cols=34 Identities=38% Similarity=0.418 Sum_probs=31.6
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
.+|+|||||++|+++|..|++.|++ |+|+|+.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~---V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWA---VTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCc
Confidence 6899999999999999999999987 999998864
No 272
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.04 E-value=1.6e-05 Score=80.86 Aligned_cols=97 Identities=29% Similarity=0.355 Sum_probs=76.2
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH 84 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (479)
.+++|||+|+.|+.+|..|+++|++ |+++|..+...-. ... + .....+.+.++++
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~---v~l~e~~~~~~~~-------~~~-------~--------~~~~~~~~~l~~~ 191 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKK---VTLIEAADRLGGQ-------LLD-------P--------EVAEELAELLEKY 191 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCe---EEEEEcccccchh-------hhh-------H--------HHHHHHHHHHHHC
Confidence 6899999999999999999999987 8999998642100 000 1 1124566778899
Q ss_pred CcEEEeCceEEEEECCCcE-----EEeCCCcEEEeceEEeecCCCcc
Q 011700 85 GIELVLGTRVKSADVRRKT-----LVTATGETISYKILIIATGARAL 126 (479)
Q Consensus 85 gv~~~~~~~v~~i~~~~~~-----v~~~~g~~~~~d~lviAtG~~~~ 126 (479)
||+++.++.+..++...+. +...++..+++|.+++++|.+|.
T Consensus 192 gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 192 GVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred CcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence 9999999999999987653 45667788999999999999984
No 273
>PLN02507 glutathione reductase
Probab=98.04 E-value=2.4e-05 Score=81.56 Aligned_cols=99 Identities=18% Similarity=0.234 Sum_probs=73.5
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||+.|+..|..+++.|.+ |+|+++.+.. . +.+. .+......+.+++
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~---Vtli~~~~~~-l------------------~~~d----~~~~~~l~~~l~~ 256 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGAT---VDLFFRKELP-L------------------RGFD----DEMRAVVARNLEG 256 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEEecCCc-C------------------cccC----HHHHHHHHHHHHh
Confidence 35899999999999999999998876 9999887521 0 0000 0111234556788
Q ss_pred cCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCcccc
Q 011700 84 HGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALKL 128 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~~ 128 (479)
.||+++.++.|.+++.++. .+.+.+++++++|.+++|+|.+|...
T Consensus 257 ~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~ 303 (499)
T PLN02507 257 RGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTK 303 (499)
T ss_pred CCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCC
Confidence 9999999999999875433 45556778899999999999998753
No 274
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.03 E-value=0.00026 Score=63.42 Aligned_cols=167 Identities=18% Similarity=0.209 Sum_probs=102.6
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc------cC-------------------------------C
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------LF-------------------------------T 203 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------~~-------------------------------~ 203 (479)
....|+|||+|++|+-+|..|++.|.+|.+++++-.+-.. .| +
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds 108 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADS 108 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecH
Confidence 4568999999999999999999999999999987432111 00 1
Q ss_pred HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC-----------CCcEEeccEEEEecCCCCChh-hh-hcc
Q 011700 204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-----------DGNRLPTDMVVVGIGIRPNTS-LF-EGQ 270 (479)
Q Consensus 204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~-----------~g~~i~~D~Vi~a~G~~p~~~-l~-~~~ 270 (479)
.+....+....-+.|.+++..+.++.+...++.++..+..+ |--.++++.|+-+||.....- ++ +..
T Consensus 109 ~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~ 188 (262)
T COG1635 109 AEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRI 188 (262)
T ss_pred HHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhc
Confidence 22333333344467899999999998876444356666553 234789999999999877653 22 111
Q ss_pred ----ccc-ccCcEE--------EcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCC
Q 011700 271 ----LTL-EKGGIK--------VTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP 331 (479)
Q Consensus 271 ----~~~-~~g~i~--------Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~ 331 (479)
... ..+..+ |+... --+|++|++|=.+..- +|.++.=+...-=...|+.||+.++..
T Consensus 189 ~~l~~~~~Ge~~mw~e~~E~lvV~~T~-eV~pgL~vaGMa~~av---~G~pRMGPiFGgMllSGkkaAe~i~e~ 258 (262)
T COG1635 189 PELGIEVPGEKSMWAERGEDLVVENTG-EVYPGLYVAGMAVNAV---HGLPRMGPIFGGMLLSGKKAAEEILEK 258 (262)
T ss_pred cccccccCCCcchhhhHHHHHHHhccc-cccCCeEeehhhHHhh---cCCcccCchhhhhhhchHHHHHHHHHH
Confidence 111 111122 22222 2489999999776532 122222122222245677777776543
No 275
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.03 E-value=2.3e-05 Score=81.26 Aligned_cols=98 Identities=18% Similarity=0.295 Sum_probs=71.0
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||+.|+..|..+++.|.+ |+++++.+... +.+. ........+.+++
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~---Vtlie~~~~il-------------------~~~d----~~~~~~l~~~l~~ 227 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQ---VTVVEYLDRIC-------------------PGTD----TETAKTLQKALTK 227 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEeCCCCCC-------------------CCCC----HHHHHHHHHHHHh
Confidence 46899999999999999999998876 99999875310 1000 0011334566778
Q ss_pred cCcEEEeCceEEEEECCCcE--EEeC-----CCcEEEeceEEeecCCCccc
Q 011700 84 HGIELVLGTRVKSADVRRKT--LVTA-----TGETISYKILIIATGARALK 127 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~--v~~~-----~g~~~~~d~lviAtG~~~~~ 127 (479)
.||+++.++.+.++..++.. +.+. +++++++|.|++|+|.+|..
T Consensus 228 ~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~ 278 (466)
T PRK06115 228 QGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYT 278 (466)
T ss_pred cCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCcccc
Confidence 89999999999999764332 3222 23579999999999998864
No 276
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.02 E-value=2.3e-05 Score=83.46 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=31.5
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
++||||||+|.||++||+++++.|.+ |+|||+...
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~---V~vleK~~~ 46 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLARAGLS---VAVLSKVFP 46 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCc---EEEEeccCC
Confidence 47999999999999999999998876 999999753
No 277
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.02 E-value=4.4e-05 Score=77.95 Aligned_cols=33 Identities=27% Similarity=0.488 Sum_probs=30.1
Q ss_pred eEEEECCchHHHHHHHHHHHcC-CCCCcEEEEcCCCC
Q 011700 6 VYVIVGGGVAAGYAALEFTKRG-VPPGELCIISEEPV 41 (479)
Q Consensus 6 dvvIIGgG~aGl~aA~~l~~~g-~~~~~V~lie~~~~ 41 (479)
+|+|||||++||++|..|++.| .+ |+|+|+.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~---v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLN---VQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCC---EEEEecCCc
Confidence 7999999999999999999987 46 999999865
No 278
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.02 E-value=2.5e-05 Score=81.60 Aligned_cols=97 Identities=13% Similarity=0.107 Sum_probs=71.6
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH 84 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (479)
.+++|||||+.|+..|..|+++|.+ |+++++... .. .+ + ........+.+++.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~---Vtli~~~~~--l~--~~-------------d-------~~~~~~l~~~l~~~ 235 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFD---VTVAVRSIP--LR--GF-------------D-------RQCSEKVVEYMKEQ 235 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCcc--cc--cC-------------C-------HHHHHHHHHHHHHc
Confidence 5899999999999999999998876 899976421 10 00 0 00113455677889
Q ss_pred CcEEEeCceEEEEECCC--cEEEeCCCcEEEeceEEeecCCCcccc
Q 011700 85 GIELVLGTRVKSADVRR--KTLVTATGETISYKILIIATGARALKL 128 (479)
Q Consensus 85 gv~~~~~~~v~~i~~~~--~~v~~~~g~~~~~d~lviAtG~~~~~~ 128 (479)
||+++.++.+..+...+ ..+.+.+++++.+|.|++|+|.+|...
T Consensus 236 GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~ 281 (499)
T PTZ00052 236 GTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIK 281 (499)
T ss_pred CCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCcc
Confidence 99999998888776433 245566788899999999999998653
No 279
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.02 E-value=2.3e-05 Score=83.73 Aligned_cols=35 Identities=31% Similarity=0.274 Sum_probs=32.0
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
++||||||+|.||++||+++++.|.+ |+|+||.+.
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~---V~lveK~~~ 63 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVELGYK---TACISKLFP 63 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCc---EEEEeccCC
Confidence 57999999999999999999998876 999999865
No 280
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.01 E-value=0.00014 Score=75.39 Aligned_cols=65 Identities=15% Similarity=0.250 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcC--CC--cEEEEEeCCC---cEEeccEEEEecCCCCChhhh
Q 011700 203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDS--NG--KVVAVNLRDG---NRLPTDMVVVGIGIRPNTSLF 267 (479)
Q Consensus 203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~--~g--~v~~v~~~~g---~~i~~D~Vi~a~G~~p~~~l~ 267 (479)
..-+.+.+.+.|+++|.+++++++|++|+.++ ++ +++.+.+.+| +++++|.||+|++..--..++
T Consensus 218 ~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll 289 (474)
T TIGR02732 218 DKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLL 289 (474)
T ss_pred chhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhC
Confidence 44456777888889999999999999998743 23 2666666544 468999999998854333343
No 281
>PLN02487 zeta-carotene desaturase
Probab=98.01 E-value=6e-05 Score=79.23 Aligned_cols=60 Identities=13% Similarity=0.192 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcC--CC--cEEEEEe---CCCcEEeccEEEEecCCC
Q 011700 202 FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDS--NG--KVVAVNL---RDGNRLPTDMVVVGIGIR 261 (479)
Q Consensus 202 ~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~--~g--~v~~v~~---~~g~~i~~D~Vi~a~G~~ 261 (479)
+...+.+.+.+.++++|.+|++++.|.+|+.+. ++ +++.+.+ .+++.+++|.||++++..
T Consensus 293 ~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 293 PDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP 359 (569)
T ss_pred chHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence 455688889999999999999999999998742 33 3677777 344578999999999854
No 282
>PRK13748 putative mercuric reductase; Provisional
Probab=98.00 E-value=2.3e-05 Score=83.26 Aligned_cols=98 Identities=16% Similarity=0.162 Sum_probs=71.0
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||+.|+..|..|++.|.+ |+++++....+ .+. ........+.+++
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtli~~~~~l~--------------------~~d----~~~~~~l~~~l~~ 322 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSK---VTILARSTLFF--------------------RED----PAIGEAVTAAFRA 322 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCE---EEEEecCcccc--------------------ccC----HHHHHHHHHHHHH
Confidence 36899999999999999999998876 99998753110 000 0011334567788
Q ss_pred cCcEEEeCceEEEEECCCcEEEe-CCCcEEEeceEEeecCCCcccc
Q 011700 84 HGIELVLGTRVKSADVRRKTLVT-ATGETISYKILIIATGARALKL 128 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~-~~g~~~~~d~lviAtG~~~~~~ 128 (479)
.||+++.++.+.+++.++..+.+ .++.++.+|.+++|+|.+|...
T Consensus 323 ~gI~i~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~ 368 (561)
T PRK13748 323 EGIEVLEHTQASQVAHVDGEFVLTTGHGELRADKLLVATGRAPNTR 368 (561)
T ss_pred CCCEEEcCCEEEEEEecCCEEEEEecCCeEEeCEEEEccCCCcCCC
Confidence 99999999999988765443332 2234699999999999998753
No 283
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.00 E-value=2.4e-05 Score=81.65 Aligned_cols=33 Identities=27% Similarity=0.431 Sum_probs=30.6
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
|||+|||||+||+.||..+++.|.+ |+|+++..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~---v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAK---TLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCC---EEEEeccc
Confidence 6999999999999999999999887 89999874
No 284
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.99 E-value=3.2e-05 Score=82.70 Aligned_cols=35 Identities=26% Similarity=0.305 Sum_probs=31.8
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
++||||||+|.||++||+++++.|.+ |+||||...
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~---VilveK~~~ 84 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFN---TACITKLFP 84 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCc---EEEEEcCCC
Confidence 47999999999999999999998887 899999864
No 285
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.98 E-value=3.5e-05 Score=79.40 Aligned_cols=98 Identities=16% Similarity=0.245 Sum_probs=71.5
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||+|+.|+..|..|++.|.+ |+++++.+... |.+. ........+.+++
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l-------------------~~~~----~~~~~~l~~~l~~ 211 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSK---VTILEAASLFL-------------------PRED----RDIADNIATILRD 211 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCC-------------------CCcC----HHHHHHHHHHHHh
Confidence 35899999999999999999998876 99999875310 0000 0011234566788
Q ss_pred cCcEEEeCceEEEEECCCcEEEeC-CCcEEEeceEEeecCCCccc
Q 011700 84 HGIELVLGTRVKSADVRRKTLVTA-TGETISYKILIIATGARALK 127 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~~-~g~~~~~d~lviAtG~~~~~ 127 (479)
.|++++.++.+.+++.++..+.+. ++.++.+|.+++|+|.+|..
T Consensus 212 ~gV~v~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 212 QGVDIILNAHVERISHHENQVQVHSEHAQLAVDALLIASGRQPAT 256 (441)
T ss_pred CCCEEEeCCEEEEEEEcCCEEEEEEcCCeEEeCEEEEeecCCcCC
Confidence 999999999999998665444332 23368999999999999865
No 286
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.97 E-value=3.2e-05 Score=80.29 Aligned_cols=98 Identities=16% Similarity=0.228 Sum_probs=71.1
Q ss_pred cCeEEEECCchHHHHHHHHHHHc---CCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKR---GVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKW 80 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~---g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (479)
..+++|||||+.|+..|..+.+. |.+ |+|+++.+... +.+. ........+.
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~---Vtli~~~~~il-------------------~~~d----~~~~~~l~~~ 240 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGK---VTLCYRNNMIL-------------------RGFD----STLRKELTKQ 240 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCe---EEEEecCCccc-------------------cccC----HHHHHHHHHH
Confidence 36899999999999999876654 554 99999875310 0000 0111344566
Q ss_pred HHHcCcEEEeCceEEEEECC-C--cEEEeCCCcEEEeceEEeecCCCccc
Q 011700 81 YNEHGIELVLGTRVKSADVR-R--KTLVTATGETISYKILIIATGARALK 127 (479)
Q Consensus 81 ~~~~gv~~~~~~~v~~i~~~-~--~~v~~~~g~~~~~d~lviAtG~~~~~ 127 (479)
+++.|++++.++.+.+++.+ + ..+.+.+++++++|.+++|+|.+|..
T Consensus 241 L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~ 290 (486)
T TIGR01423 241 LRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRT 290 (486)
T ss_pred HHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCc
Confidence 78899999999999988753 2 34566677789999999999998864
No 287
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.97 E-value=3.8e-05 Score=79.27 Aligned_cols=97 Identities=23% Similarity=0.297 Sum_probs=69.7
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||+.|+..|..|++.|.+ |++|++.+... +.+. .+....+.+. .+
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~---Vtli~~~~~ll-------------------~~~d----~~~~~~l~~~-~~ 221 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTR---VTIVNRSTKLL-------------------RHLD----EDISDRFTEI-AK 221 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCc---EEEEEccCccc-------------------cccC----HHHHHHHHHH-Hh
Confidence 36899999999999999999998876 99999875310 0000 0000112222 34
Q ss_pred cCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCccc
Q 011700 84 HGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALK 127 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~ 127 (479)
.+++++.++.+.+++.++. .+.+.+++++.+|.+++|+|.+|..
T Consensus 222 ~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 267 (452)
T TIGR03452 222 KKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNG 267 (452)
T ss_pred cCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCC
Confidence 6899999999999986543 3445567789999999999999865
No 288
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.96 E-value=2.3e-05 Score=72.04 Aligned_cols=34 Identities=24% Similarity=0.278 Sum_probs=31.4
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
.+++|||+|+||++||..|+..|.+ |+|+||+.-
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~---vtV~eKg~G 35 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGRE---VTVFEKGRG 35 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcE---EEEEEcCCC
Confidence 4799999999999999999999987 999999864
No 289
>PRK14727 putative mercuric reductase; Provisional
Probab=97.96 E-value=3.1e-05 Score=80.53 Aligned_cols=96 Identities=17% Similarity=0.227 Sum_probs=69.6
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH 84 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (479)
.+++|||+|+.|+..|..|++.|.+ |+++++....+ .+. ........+.+++.
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~---Vtlv~~~~~l~--------------------~~d----~~~~~~l~~~L~~~ 241 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSR---VTILARSTLLF--------------------RED----PLLGETLTACFEKE 241 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCE---EEEEEcCCCCC--------------------cch----HHHHHHHHHHHHhC
Confidence 6899999999999999999998876 89997642110 000 00113345667889
Q ss_pred CcEEEeCceEEEEECCCcEE--EeCCCcEEEeceEEeecCCCcccc
Q 011700 85 GIELVLGTRVKSADVRRKTL--VTATGETISYKILIIATGARALKL 128 (479)
Q Consensus 85 gv~~~~~~~v~~i~~~~~~v--~~~~g~~~~~d~lviAtG~~~~~~ 128 (479)
|++++.++.+..++.++..+ ...+ .++.+|.+|+|+|..|...
T Consensus 242 GV~i~~~~~V~~i~~~~~~~~v~~~~-g~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 242 GIEVLNNTQASLVEHDDNGFVLTTGH-GELRAEKLLISTGRHANTH 286 (479)
T ss_pred CCEEEcCcEEEEEEEeCCEEEEEEcC-CeEEeCEEEEccCCCCCcc
Confidence 99999999998887544433 3333 4689999999999998653
No 290
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.96 E-value=3.4e-05 Score=80.16 Aligned_cols=96 Identities=14% Similarity=0.135 Sum_probs=69.0
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH 84 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (479)
.+++|||||+.|+.+|..|+++|.+ |+++++....+ .+. ........+.+++.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~---Vtli~~~~~l~--------------------~~d----~~~~~~l~~~L~~~ 233 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLD---VTVMVRSILLR--------------------GFD----QDCANKVGEHMEEH 233 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCc---EEEEEeccccc--------------------ccC----HHHHHHHHHHHHHc
Confidence 5799999999999999999998876 89997642110 000 00112345677889
Q ss_pred CcEEEeCceEEEEECCCc--EEEeCCC---cEEEeceEEeecCCCccc
Q 011700 85 GIELVLGTRVKSADVRRK--TLVTATG---ETISYKILIIATGARALK 127 (479)
Q Consensus 85 gv~~~~~~~v~~i~~~~~--~v~~~~g---~~~~~d~lviAtG~~~~~ 127 (479)
||+++.++.+..++.... .+.+.++ +++.+|.+++|+|.+|..
T Consensus 234 gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~ 281 (484)
T TIGR01438 234 GVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACT 281 (484)
T ss_pred CCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCC
Confidence 999999988877764332 3444444 479999999999998865
No 291
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.96 E-value=4.2e-05 Score=77.27 Aligned_cols=35 Identities=31% Similarity=0.507 Sum_probs=31.0
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
+++|||||++||+||++|.+++ ++.+|+|+|+++.
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~-p~~~i~lfE~~~r 36 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAG-PDVEVTLFEADDR 36 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhC-CCCcEEEEecCCC
Confidence 7999999999999999999976 3456999999865
No 292
>PLN02661 Putative thiazole synthesis
Probab=97.95 E-value=0.00047 Score=67.42 Aligned_cols=167 Identities=15% Similarity=0.152 Sum_probs=98.5
Q ss_pred CCCCEEEECCChHHHHHHHHHhhC-CCeEEEEeecCcccc----------c----------------cCC----------
Q 011700 161 SGGNAVVIGGGYIGMECAASLVIN-KINVTMVFPEAHCMA----------R----------------LFT---------- 203 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~----------~----------------~~~---------- 203 (479)
..-.++|||+|..|+-+|..|++. |.+|+++++...+-. . .++
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~h 170 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKH 170 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecc
Confidence 456899999999999999999976 899999998643211 0 001
Q ss_pred -HHHHHHHH-HHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC------C--C------cEEeccEEEEecCCCCChh--
Q 011700 204 -PKIASYYE-EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR------D--G------NRLPTDMVVVGIGIRPNTS-- 265 (479)
Q Consensus 204 -~~~~~~~~-~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~------~--g------~~i~~D~Vi~a~G~~p~~~-- 265 (479)
.++...+. +.+++.||+++.++.+.++.. +++++..+... + + ..+.++.||+|||-.+...
T Consensus 171 a~e~~stLi~ka~~~~gVkI~~~t~V~DLI~-~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~ 249 (357)
T PLN02661 171 AALFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAT 249 (357)
T ss_pred hHHHHHHHHHHHHhcCCCEEEeCeEeeeEEe-cCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcchhh
Confidence 11112233 344457899999999999887 46677676631 1 1 2689999999999665321
Q ss_pred hhh----ccccc---ccCcEEEcC--cc---cC--CCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCC
Q 011700 266 LFE----GQLTL---EKGGIKVTG--RL---QS--SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP 331 (479)
Q Consensus 266 l~~----~~~~~---~~g~i~Vd~--~l---~t--~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~ 331 (479)
..+ .++.. ......++. .+ .| -+|++|++|=.+.-. .|.++.=+....=...|+.||+.|+..
T Consensus 250 ~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev~pgl~~~gm~~~~~---~g~~rmgp~fg~m~~sg~k~a~~~~~~ 326 (357)
T PLN02661 250 GVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEI---DGSPRMGPTFGAMMISGQKAAHLALKA 326 (357)
T ss_pred hhhcccccCCccCCCCccccchhhHHHHHHhccCcccCCEEEeccchhhh---cCCCccCchhHhHHhhhHHHHHHHHHH
Confidence 111 01100 011122221 10 22 489999999776532 122222122322245677777777644
No 293
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=97.94 E-value=0.0003 Score=72.96 Aligned_cols=60 Identities=23% Similarity=0.295 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEE---eCCC--cEEeccEEEEecCCCCC
Q 011700 203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN---LRDG--NRLPTDMVVVGIGIRPN 263 (479)
Q Consensus 203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~---~~~g--~~i~~D~Vi~a~G~~p~ 263 (479)
+..+.+.+.+.++++|++++.+++|++++.++++.+ .+. ..++ .++.+|.||+|+|....
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~s~ 241 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTRFVFVGAGGGAL 241 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECCEEEECCCcchH
Confidence 456778888888889999999999999987444432 232 2334 36899999999997643
No 294
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.94 E-value=4.2e-05 Score=81.36 Aligned_cols=35 Identities=29% Similarity=0.380 Sum_probs=31.7
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
++||||||+|.||++||.++++.|.+ |+|+||...
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~---V~lleK~~~ 41 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQS---CALLSKVFP 41 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCc---EEEEEccCC
Confidence 47999999999999999999998887 899999854
No 295
>PRK06834 hypothetical protein; Provisional
Probab=97.94 E-value=0.00012 Score=76.29 Aligned_cols=101 Identities=28% Similarity=0.415 Sum_probs=76.4
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc---ccc--------------------------------------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---ARL-------------------------------------- 201 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l---~~~-------------------------------------- 201 (479)
..|+|||+|+.|+-+|..|++.|.+|+++++.+... ++.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 83 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD 83 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence 579999999999999999999999999999763210 000
Q ss_pred ---C-----------CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700 202 ---F-----------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 202 ---~-----------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~ 265 (479)
+ -..+.+.+.+.+++.|++++.++++++++.++++ + .+.+.+|+++.+|.||.|.|..+...
T Consensus 84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~-v-~v~~~~g~~i~a~~vVgADG~~S~vR 159 (488)
T PRK06834 84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG-V-DVELSDGRTLRAQYLVGCDGGRSLVR 159 (488)
T ss_pred cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe-E-EEEECCCCEEEeCEEEEecCCCCCcH
Confidence 0 0123344556667789999999999999874433 3 46677888999999999999887653
No 296
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.93 E-value=3.2e-05 Score=79.56 Aligned_cols=36 Identities=31% Similarity=0.410 Sum_probs=29.0
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
||||||||+||..+|..|++.+.+..+|+|||++..
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~ 36 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDI 36 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCC
Confidence 799999999999999999998744467999999976
No 297
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.92 E-value=0.00012 Score=77.53 Aligned_cols=99 Identities=18% Similarity=0.320 Sum_probs=74.2
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc--------c---cc---cCCHHHHHHHHHHHHhCCcEEEcCCceE
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC--------M---AR---LFTPKIASYYEEYYKSKGVKFVKGTVLS 228 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~--------l---~~---~~~~~~~~~~~~~l~~~GV~i~~~~~v~ 228 (479)
-.++|||||+.|+.+|..+++.|.+|+++++.+.- . +. ...+++.+.+.+.+++.|++++ +..+.
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~ 83 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEVL 83 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEEE
Confidence 46999999999999999999999999999975310 0 10 0124667777788888999986 56788
Q ss_pred EEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700 229 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 229 ~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~ 265 (479)
.++. ++....+.+.++ ++.+|.+|+|+|.+|...
T Consensus 84 ~i~~--~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~ 117 (555)
T TIGR03143 84 DVDF--DGDIKTIKTARG-DYKTLAVLIATGASPRKL 117 (555)
T ss_pred EEEe--cCCEEEEEecCC-EEEEeEEEECCCCccCCC
Confidence 8876 233334666555 689999999999988754
No 298
>PRK07045 putative monooxygenase; Reviewed
Probab=97.92 E-value=0.00014 Score=73.68 Aligned_cols=103 Identities=22% Similarity=0.262 Sum_probs=77.6
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc---------c---------------------------------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA---------R--------------------------------- 200 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------~--------------------------------- 200 (479)
-+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.. .
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 85 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKEL 85 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCcE
Confidence 4799999999999999999999999999987643210 0
Q ss_pred ----c------CC-------HHHHHHHHHHHH-hCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700 201 ----L------FT-------PKIASYYEEYYK-SKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 262 (479)
Q Consensus 201 ----~------~~-------~~~~~~~~~~l~-~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p 262 (479)
. .. .++.+.+.+.+. ..|++++.+++++.++.++++.+..+.+.+|+++.+|+||-|.|...
T Consensus 86 ~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S 165 (388)
T PRK07045 86 IASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARS 165 (388)
T ss_pred EEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCCh
Confidence 0 00 122333444443 35799999999999988666665678888999999999999999876
Q ss_pred Chh
Q 011700 263 NTS 265 (479)
Q Consensus 263 ~~~ 265 (479)
...
T Consensus 166 ~vR 168 (388)
T PRK07045 166 MIR 168 (388)
T ss_pred HHH
Confidence 543
No 299
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.91 E-value=2.6e-05 Score=80.41 Aligned_cols=93 Identities=23% Similarity=0.263 Sum_probs=69.9
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc-------cc-cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEE
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 232 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~ 232 (479)
.+++++|||+|+.|+++|..|++.|.+|+++++.+.+. +. .+++++.+...+.+++.||+++.++.+..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~--- 208 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGK--- 208 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccCC---
Confidence 36789999999999999999999999999999876541 11 14667777777788899999999875411
Q ss_pred cCCCcEEEEEeCCCcEEeccEEEEecCC-CCCh
Q 011700 233 DSNGKVVAVNLRDGNRLPTDMVVVGIGI-RPNT 264 (479)
Q Consensus 233 ~~~g~v~~v~~~~g~~i~~D~Vi~a~G~-~p~~ 264 (479)
.+.+.+. ...+|.|++|+|. .|..
T Consensus 209 -------~v~~~~~-~~~yd~viiAtGa~~p~~ 233 (449)
T TIGR01316 209 -------TATLEEL-FSQYDAVFIGTGAGLPKL 233 (449)
T ss_pred -------cCCHHHH-HhhCCEEEEeCCCCCCCc
Confidence 1222222 3468999999997 5543
No 300
>PRK08244 hypothetical protein; Provisional
Probab=97.91 E-value=0.00013 Score=76.31 Aligned_cols=103 Identities=22% Similarity=0.330 Sum_probs=74.7
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc--c----------------------------------------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA--R---------------------------------------- 200 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~---------------------------------------- 200 (479)
-.|+|||+|+.|+-+|..|++.|.+|+++++.+.... +
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL 82 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence 3699999999999999999999999999997632100 0
Q ss_pred c-------------CC-HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC-cEEeccEEEEecCCCCChh
Q 011700 201 L-------------FT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 201 ~-------------~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g-~~i~~D~Vi~a~G~~p~~~ 265 (479)
. ++ ..+.+.+.+.+++.|++++.++++++++.++++....+...+| +++.+|.||.|.|.++...
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~vR 162 (493)
T PRK08244 83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIVR 162 (493)
T ss_pred CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHHH
Confidence 0 00 1344556666777899999999999998744442222333355 4799999999999887543
No 301
>PTZ00058 glutathione reductase; Provisional
Probab=97.90 E-value=5.7e-05 Score=79.52 Aligned_cols=98 Identities=14% Similarity=0.118 Sum_probs=71.0
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||+.|+..|..+++.|.+ |+++++.+.. + +.+. ........+.+++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~---Vtli~~~~~i-----------l--------~~~d----~~i~~~l~~~L~~ 290 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAE---SYIFARGNRL-----------L--------RKFD----ETIINELENDMKK 290 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCc---EEEEEecccc-----------c--------ccCC----HHHHHHHHHHHHH
Confidence 46899999999999999999998876 9999987521 0 0000 0111234566788
Q ss_pred cCcEEEeCceEEEEECCCc---EEEeCC-CcEEEeceEEeecCCCccc
Q 011700 84 HGIELVLGTRVKSADVRRK---TLVTAT-GETISYKILIIATGARALK 127 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~---~v~~~~-g~~~~~d~lviAtG~~~~~ 127 (479)
.||+++.++.+.+++.+.. .+...+ ++++.+|.|++|+|.+|..
T Consensus 291 ~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~ 338 (561)
T PTZ00058 291 NNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNT 338 (561)
T ss_pred CCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCc
Confidence 8999999999999875432 233333 3579999999999988764
No 302
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.90 E-value=5.2e-05 Score=78.59 Aligned_cols=98 Identities=19% Similarity=0.283 Sum_probs=70.7
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||+|+.|+..|..|+++|.+ |+++++.+... +.+. ........+.+++
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l-------------------~~~d----~~~~~~~~~~l~~ 222 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVK---VTVFERGDRIL-------------------PLED----PEVSKQAQKILSK 222 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCcC-------------------cchh----HHHHHHHHHHHhh
Confidence 46899999999999999999998876 99999875310 0000 0111234556677
Q ss_pred cCcEEEeCceEEEEECCCc-EEEe----CCCcEEEeceEEeecCCCcccc
Q 011700 84 HGIELVLGTRVKSADVRRK-TLVT----ATGETISYKILIIATGARALKL 128 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~-~v~~----~~g~~~~~d~lviAtG~~~~~~ 128 (479)
. ++++.++++.+++.++. .+.+ .+++++++|.+++|+|.+|...
T Consensus 223 ~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~ 271 (460)
T PRK06292 223 E-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTD 271 (460)
T ss_pred c-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCC
Confidence 7 99999999999976543 3432 2335799999999999998764
No 303
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.90 E-value=0.00015 Score=73.39 Aligned_cols=101 Identities=23% Similarity=0.375 Sum_probs=76.9
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc-------------c-cc---------------------------
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC-------------M-AR--------------------------- 200 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~-------------l-~~--------------------------- 200 (479)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+.. + +.
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 85 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRV 85 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEE
Confidence 467999999999999999999999999999975311 0 00
Q ss_pred ---------cC---------------CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEE
Q 011700 201 ---------LF---------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV 256 (479)
Q Consensus 201 ---------~~---------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~ 256 (479)
.+ ...+.+.+.+.+++.|++++.++++++++.++ +.+ .+++.+|+++.+|.||.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~~v-~v~~~~g~~~~a~~vV~ 163 (392)
T PRK08773 86 WDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDA-DRV-RLRLDDGRRLEAALAIA 163 (392)
T ss_pred EeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecC-CeE-EEEECCCCEEEeCEEEE
Confidence 00 02234445566777899999999999998733 333 47778888999999999
Q ss_pred ecCCCCCh
Q 011700 257 GIGIRPNT 264 (479)
Q Consensus 257 a~G~~p~~ 264 (479)
|.|..+..
T Consensus 164 AdG~~S~v 171 (392)
T PRK08773 164 ADGAASTL 171 (392)
T ss_pred ecCCCchH
Confidence 99998754
No 304
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.89 E-value=4e-05 Score=81.99 Aligned_cols=36 Identities=25% Similarity=0.497 Sum_probs=33.0
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
+++||||||||..|.++|+.|+++|++ |+|||+++.
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~---V~LvE~~d~ 105 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLR---VGLVEREDF 105 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCE---EEEEecccc
Confidence 358999999999999999999999997 999999864
No 305
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=97.89 E-value=0.0005 Score=71.15 Aligned_cols=60 Identities=13% Similarity=0.141 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHH-hCCcEEEcCCceEEEEEcCCCcEEEEE---eCCCc--EEeccEEEEecCCCCCh
Q 011700 204 PKIASYYEEYYK-SKGVKFVKGTVLSSFDVDSNGKVVAVN---LRDGN--RLPTDMVVVGIGIRPNT 264 (479)
Q Consensus 204 ~~~~~~~~~~l~-~~GV~i~~~~~v~~i~~~~~g~v~~v~---~~~g~--~i~~D~Vi~a~G~~p~~ 264 (479)
..+.+.+.+.+. ..|++++++++|..++..+++.. .+. ..+++ ++.+|.||+|.|.....
T Consensus 184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w-~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~ 249 (497)
T PRK13339 184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGW-EVTVKDRNTGEKREQVADYVFIGAGGGAIP 249 (497)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCE-EEEEEecCCCceEEEEcCEEEECCCcchHH
Confidence 455666767675 45999999999999987424432 233 33442 68999999999987643
No 306
>PLN02463 lycopene beta cyclase
Probab=97.88 E-value=0.00014 Score=74.56 Aligned_cols=98 Identities=21% Similarity=0.314 Sum_probs=73.3
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc-cccC---------------------------------------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-ARLF--------------------------------------- 202 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-~~~~--------------------------------------- 202 (479)
-.++|||+|+.|+-+|..|++.|.+|.++++.+... +...
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y 108 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY 108 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence 379999999999999999999999999998864211 1000
Q ss_pred ----CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700 203 ----TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 263 (479)
Q Consensus 203 ----~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~ 263 (479)
..++.+.+.+.+.+.|++++ ..+|++++.. ++. ..|.+++|+++.+|.||.|+|..+.
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~-~~~-~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHE-ESK-SLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEc-CCe-EEEEECCCCEEEcCEEEECcCCCcC
Confidence 11233455556667899997 4678999873 333 4678889989999999999998764
No 307
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.88 E-value=0.00014 Score=73.69 Aligned_cols=101 Identities=22% Similarity=0.238 Sum_probs=74.4
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc----------------------------------c------
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------L------ 201 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------~------ 201 (479)
+.+|+|||+|+.|+-+|..|++.|.+|+++++.+.+... .
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 578999999999999999999999999999987432100 0
Q ss_pred -------CC----------------HHHHHHHHHHHHhC-CcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEe
Q 011700 202 -------FT----------------PKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG 257 (479)
Q Consensus 202 -------~~----------------~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a 257 (479)
++ .++.+.+.+.+.+. +++++.++++++++.+ ++.+ .+.+.+|+++.+|.||.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~-~~~v-~v~~~~g~~~~ad~vV~A 161 (396)
T PRK08163 84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQD-GDGV-TVFDQQGNRWTGDALIGC 161 (396)
T ss_pred CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecC-CCce-EEEEcCCCEEecCEEEEC
Confidence 00 11223344444444 4999999999999863 3333 477788889999999999
Q ss_pred cCCCCCh
Q 011700 258 IGIRPNT 264 (479)
Q Consensus 258 ~G~~p~~ 264 (479)
.|..+..
T Consensus 162 dG~~S~~ 168 (396)
T PRK08163 162 DGVKSVV 168 (396)
T ss_pred CCcChHH
Confidence 9987655
No 308
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.88 E-value=3.9e-05 Score=79.39 Aligned_cols=93 Identities=22% Similarity=0.315 Sum_probs=70.2
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc-------cc-cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEE
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 232 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~ 232 (479)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+.+. +. .++.++.+...+.+++.|++++.++.+..-
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 217 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD-- 217 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc--
Confidence 36889999999999999999999999999999876541 11 146667677778889999999999865221
Q ss_pred cCCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700 233 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 264 (479)
Q Consensus 233 ~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~ 264 (479)
+.+.+ ....+|.|++|+|..+..
T Consensus 218 --------~~~~~-~~~~~D~vilAtGa~~~~ 240 (467)
T TIGR01318 218 --------ISLDD-LLEDYDAVFLGVGTYRSM 240 (467)
T ss_pred --------cCHHH-HHhcCCEEEEEeCCCCCC
Confidence 11111 124699999999988753
No 309
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.87 E-value=6e-05 Score=81.06 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=31.9
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
.+||||||+|.||++||+++++.|.+ |+|+|+.+.
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~---VivleK~~~ 39 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLD---TIVLSLVPA 39 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCC---EEEEeCCCC
Confidence 48999999999999999999998887 899998764
No 310
>PRK12831 putative oxidoreductase; Provisional
Probab=97.86 E-value=3.4e-05 Score=79.70 Aligned_cols=94 Identities=24% Similarity=0.305 Sum_probs=68.3
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc-------cc-cCCH-HHHHHHHHHHHhCCcEEEcCCceEEEE
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTP-KIASYYEEYYKSKGVKFVKGTVLSSFD 231 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------~~-~~~~-~~~~~~~~~l~~~GV~i~~~~~v~~i~ 231 (479)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+.+. +. .++. ++.+...+.+++.||++++++.+..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~-- 216 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK-- 216 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC--
Confidence 46899999999999999999999999999999865431 11 0222 3666666788889999999985421
Q ss_pred EcCCCcEEEEEeCCC-cEEeccEEEEecCC-CCCh
Q 011700 232 VDSNGKVVAVNLRDG-NRLPTDMVVVGIGI-RPNT 264 (479)
Q Consensus 232 ~~~~g~v~~v~~~~g-~~i~~D~Vi~a~G~-~p~~ 264 (479)
.+.+.+. +.+.+|.|++|+|. .|..
T Consensus 217 --------~v~~~~~~~~~~~d~viiAtGa~~~~~ 243 (464)
T PRK12831 217 --------TVTIDELLEEEGFDAVFIGSGAGLPKF 243 (464)
T ss_pred --------cCCHHHHHhccCCCEEEEeCCCCCCCC
Confidence 1222232 24569999999997 4643
No 311
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=97.85 E-value=1.9e-05 Score=58.28 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=26.8
Q ss_pred EECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 9 IVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 9 IIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
|||||++||++|..|++.|.+ |+|+|+.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~---v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYR---VTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSE---EEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCc---EEEEecCcc
Confidence 899999999999999998775 999999975
No 312
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.84 E-value=0.00022 Score=72.11 Aligned_cols=100 Identities=21% Similarity=0.304 Sum_probs=77.4
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecC-ccccc-----------------------------------------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA-HCMAR----------------------------------------- 200 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~----------------------------------------- 200 (479)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+ .+.+.
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~~ 82 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGGR 82 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCCc
Confidence 579999999999999999999999999999861 11110
Q ss_pred ------------------cCCHHHHHHHHHHHHhCC-cEEEcCCceEEEEEcCCCcEEEEEeC-CCcEEeccEEEEecCC
Q 011700 201 ------------------LFTPKIASYYEEYYKSKG-VKFVKGTVLSSFDVDSNGKVVAVNLR-DGNRLPTDMVVVGIGI 260 (479)
Q Consensus 201 ------------------~~~~~~~~~~~~~l~~~G-V~i~~~~~v~~i~~~~~g~v~~v~~~-~g~~i~~D~Vi~a~G~ 260 (479)
.--.++.+.+.+.+.+.+ |+++.+++|+.++.++ +.+. ++++ ||+++.||+||-|=|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~-~~v~-v~l~~dG~~~~a~llVgADG~ 160 (387)
T COG0654 83 RLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDG-DGVT-VTLSFDGETLDADLLVGADGA 160 (387)
T ss_pred eeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC-CceE-EEEcCCCcEEecCEEEECCCC
Confidence 001245566677777666 9999999999999843 4444 7777 9999999999999997
Q ss_pred CCCh
Q 011700 261 RPNT 264 (479)
Q Consensus 261 ~p~~ 264 (479)
....
T Consensus 161 ~S~v 164 (387)
T COG0654 161 NSAV 164 (387)
T ss_pred chHH
Confidence 6544
No 313
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.82 E-value=4.9e-05 Score=79.04 Aligned_cols=90 Identities=24% Similarity=0.353 Sum_probs=68.5
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc-------cc-cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEE
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 232 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~ 232 (479)
.+++++|||+|+.|+++|..|++.|.+|+++++.+++. +. .+++++.....+.+++.||+++.++.+.. +
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~-~- 219 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGV-D- 219 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCC-c-
Confidence 34799999999999999999999999999999887642 11 13566766667788999999999987631 1
Q ss_pred cCCCcEEEEEeCCCcEEeccEEEEecCCC
Q 011700 233 DSNGKVVAVNLRDGNRLPTDMVVVGIGIR 261 (479)
Q Consensus 233 ~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~ 261 (479)
+. .+.....+|.|++|+|..
T Consensus 220 --------~~-~~~~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 220 --------IS-ADELKEQFDAVVLAGGAT 239 (485)
T ss_pred --------cC-HHHHHhhCCEEEEccCCC
Confidence 00 011235789999999987
No 314
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.81 E-value=5.9e-05 Score=77.71 Aligned_cols=92 Identities=18% Similarity=0.225 Sum_probs=66.0
Q ss_pred CCCCEEEECCChHHHHHHHHHhh--CCCeEEEEeecCcccc--------cc-CCHHHHHHHHHHHHhCCcEEEcCCceEE
Q 011700 161 SGGNAVVIGGGYIGMECAASLVI--NKINVTMVFPEAHCMA--------RL-FTPKIASYYEEYYKSKGVKFVKGTVLSS 229 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l~--------~~-~~~~~~~~~~~~l~~~GV~i~~~~~v~~ 229 (479)
.+++|+|||+|+.|+.+|..|.+ .|.+|+++++.+.+.. .. ....+.+.+.+.++..+|+++.+..+..
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~ 104 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGR 104 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECc
Confidence 46899999999999999999987 7999999999876531 10 1123344556667778999998765421
Q ss_pred EEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700 230 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 263 (479)
Q Consensus 230 i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~ 263 (479)
.+.+.+- ...+|.||+|+|..+.
T Consensus 105 ----------dvtl~~L-~~~yDaVIlAtGa~~~ 127 (491)
T PLN02852 105 ----------DVSLSEL-RDLYHVVVLAYGAESD 127 (491)
T ss_pred ----------cccHHHH-hhhCCEEEEecCCCCC
Confidence 1233332 2468999999998764
No 315
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.79 E-value=0.00028 Score=71.85 Aligned_cols=100 Identities=17% Similarity=0.275 Sum_probs=74.3
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc----------cccc-------------------------c------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH----------CMAR-------------------------L------ 201 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~----------~l~~-------------------------~------ 201 (479)
..|+|||+|+.|+-+|..|++.|.+|+++++.+. ..++ .
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 82 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEM 82 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeE
Confidence 3699999999999999999999999999997641 0000 0
Q ss_pred ------------CC---------------HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEE
Q 011700 202 ------------FT---------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 254 (479)
Q Consensus 202 ------------~~---------------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~V 254 (479)
++ ..+.+.+.+.+++.|++++.++++.+++.++++ ..+.+.+|+++.+|.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~g~~~~a~~v 160 (405)
T PRK05714 83 QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD--WLLTLADGRQLRAPLV 160 (405)
T ss_pred EEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEE
Confidence 00 012233445566679999999999999874443 3477888889999999
Q ss_pred EEecCCCCCh
Q 011700 255 VVGIGIRPNT 264 (479)
Q Consensus 255 i~a~G~~p~~ 264 (479)
|.|.|.....
T Consensus 161 VgAdG~~S~v 170 (405)
T PRK05714 161 VAADGANSAV 170 (405)
T ss_pred EEecCCCchh
Confidence 9999987654
No 316
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.78 E-value=4.6e-05 Score=77.69 Aligned_cols=123 Identities=20% Similarity=0.189 Sum_probs=84.7
Q ss_pred CCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCe
Q 011700 108 TGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKIN 187 (479)
Q Consensus 108 ~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~ 187 (479)
++..+.++.|..+.|........ +++. .+.. ..+++|.|||+|+.|+.+|..|++.|+.
T Consensus 90 ~~~~v~i~~le~~i~d~~~~~g~--i~~~-~~~~------------------~tg~~VaviGaGPAGl~~a~~L~~~G~~ 148 (457)
T COG0493 90 EELPVNIGALERAIGDKADREGW--IPGE-LPGS------------------RTGKKVAVIGAGPAGLAAADDLSRAGHD 148 (457)
T ss_pred CCCchhhhhHHHHHhhHHHHhCC--CCCC-CCCC------------------CCCCEEEEECCCchHhhhHHHHHhCCCe
Confidence 44567888888888866432110 1221 1111 1368999999999999999999999999
Q ss_pred EEEEeecCccccc--------cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecC
Q 011700 188 VTMVFPEAHCMAR--------LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 259 (479)
Q Consensus 188 Vtlv~~~~~~l~~--------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G 259 (479)
||++++.+.+-.. .++.++.+...+.|++.|++|+.++.+-. + +++++ ..-++|.|++++|
T Consensus 149 Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~-----~-----it~~~-L~~e~Dav~l~~G 217 (457)
T COG0493 149 VTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR-----D-----ITLEE-LLKEYDAVFLATG 217 (457)
T ss_pred EEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC-----c-----CCHHH-HHHhhCEEEEecc
Confidence 9999988654221 14668888889999999999999986531 0 11111 1234599999999
Q ss_pred CCC
Q 011700 260 IRP 262 (479)
Q Consensus 260 ~~p 262 (479)
..-
T Consensus 218 ~~~ 220 (457)
T COG0493 218 AGK 220 (457)
T ss_pred ccC
Confidence 543
No 317
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=97.78 E-value=0.00033 Score=68.28 Aligned_cols=59 Identities=19% Similarity=0.294 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC---------------CcEEeccEEEEecCCCCCh
Q 011700 206 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---------------GNRLPTDMVVVGIGIRPNT 264 (479)
Q Consensus 206 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~---------------g~~i~~D~Vi~a~G~~p~~ 264 (479)
+..++-+..++.||+++.+...+++.-++||.+..+.++| |-++.+..-++|-|-+-..
T Consensus 185 ~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~L 258 (621)
T KOG2415|consen 185 LVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSL 258 (621)
T ss_pred HHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccchh
Confidence 4455666778889999999999999888899888888764 2357778888888866543
No 318
>PRK07208 hypothetical protein; Provisional
Probab=97.78 E-value=2.7e-05 Score=81.16 Aligned_cols=58 Identities=21% Similarity=0.349 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe--CCCc--EEeccEEEEecCCC
Q 011700 204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL--RDGN--RLPTDMVVVGIGIR 261 (479)
Q Consensus 204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~--~~g~--~i~~D~Vi~a~G~~ 261 (479)
..+.+.+.+.+++.|++++++++|++|+.++++.+..+.. .+|+ ++.+|.||+++...
T Consensus 218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~ 279 (479)
T PRK07208 218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLR 279 (479)
T ss_pred chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHH
Confidence 4677888888999999999999999999855554444443 2453 68899999997743
No 319
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.78 E-value=8.2e-05 Score=73.96 Aligned_cols=101 Identities=19% Similarity=0.310 Sum_probs=78.0
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH 84 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (479)
..+|++|+|..|+.+|..|.....+ |++|++++.. .. .++ +......+..+|++.
T Consensus 214 ~~vV~vG~G~ig~Evaa~l~~~~~~---VT~V~~e~~~-~~------~lf---------------~~~i~~~~~~y~e~k 268 (478)
T KOG1336|consen 214 GKVVCVGGGFIGMEVAAALVSKAKS---VTVVFPEPWL-LP------RLF---------------GPSIGQFYEDYYENK 268 (478)
T ss_pred ceEEEECchHHHHHHHHHHHhcCce---EEEEccCccc-hh------hhh---------------hHHHHHHHHHHHHhc
Confidence 5699999999999999999986555 9999998631 10 011 112234567889999
Q ss_pred CcEEEeCceEEEEECCC----cEEEeCCCcEEEeceEEeecCCCcccccc
Q 011700 85 GIELVLGTRVKSADVRR----KTLVTATGETISYKILIIATGARALKLEE 130 (479)
Q Consensus 85 gv~~~~~~~v~~i~~~~----~~v~~~~g~~~~~d~lviAtG~~~~~~~~ 130 (479)
+|+++.++.+.+++... ..|.+.++.++.+|-||+.+|++|.....
T Consensus 269 gVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~ 318 (478)
T KOG1336|consen 269 GVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFL 318 (478)
T ss_pred CeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccccccc
Confidence 99999999888886543 24667899999999999999999987654
No 320
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.77 E-value=0.00012 Score=75.88 Aligned_cols=97 Identities=13% Similarity=0.265 Sum_probs=68.7
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH 84 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (479)
.+++|||||+.|+..|..+++.|.+ |+||++.+.. + |.+. ........+.+++.
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~---Vtlv~~~~~i-----------l--------~~~d----~~~~~~~~~~l~~~ 228 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSE---VDVVEMFDQV-----------I--------PAAD----KDIVKVFTKRIKKQ 228 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCC---EEEEecCCCC-----------C--------CcCC----HHHHHHHHHHHhhc
Confidence 6899999999999999999999886 9999987531 0 1000 00112234556666
Q ss_pred CcEEEeCceEEEEECCCcE--EEeCC--C--cEEEeceEEeecCCCcccc
Q 011700 85 GIELVLGTRVKSADVRRKT--LVTAT--G--ETISYKILIIATGARALKL 128 (479)
Q Consensus 85 gv~~~~~~~v~~i~~~~~~--v~~~~--g--~~~~~d~lviAtG~~~~~~ 128 (479)
++++.++.+..++..+.. +.+.+ + +++++|.+|+|+|.+|...
T Consensus 229 -v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~ 277 (471)
T PRK06467 229 -FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGK 277 (471)
T ss_pred -eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCC
Confidence 999999999988754333 33332 2 4699999999999998753
No 321
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.77 E-value=0.00044 Score=72.40 Aligned_cols=137 Identities=24% Similarity=0.254 Sum_probs=84.9
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc------------------------------cC----------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------LF---------- 202 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------~~---------- 202 (479)
|+|+|||+|++|+-.+..|.+.|.+++++++++.+-.- .+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 78999999999999999999999999999987532110 00
Q ss_pred -CHHHHHHHHHHHHhCCc--EEEcCCceEEEEEcCCC---cEEEEEeCC-Cc--EEeccEEEEecCC--CCChhhh-hcc
Q 011700 203 -TPKIASYYEEYYKSKGV--KFVKGTVLSSFDVDSNG---KVVAVNLRD-GN--RLPTDMVVVGIGI--RPNTSLF-EGQ 270 (479)
Q Consensus 203 -~~~~~~~~~~~l~~~GV--~i~~~~~v~~i~~~~~g---~v~~v~~~~-g~--~i~~D~Vi~a~G~--~p~~~l~-~~~ 270 (479)
.+++.++++++.+..++ .+.++++|.+++..++. ....|.+.+ |+ +..+|.|++|+|. .|+.+.. -.+
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~G 161 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFPG 161 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----CT
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhhh
Confidence 15788888888888776 58899999999875442 123455543 42 4569999999995 3554420 012
Q ss_pred cccccCcEEEcCcccC----CCCCeEEEeeecc
Q 011700 271 LTLEKGGIKVTGRLQS----SNSSVYAVGDVAA 299 (479)
Q Consensus 271 ~~~~~g~i~Vd~~l~t----~~~~IyA~GD~~~ 299 (479)
+..=+|.|.=...++. ..++|-.+|-..+
T Consensus 162 ~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~S 194 (531)
T PF00743_consen 162 LEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNS 194 (531)
T ss_dssp GGGHCSEEEEGGG--TGGGGTTSEEEEESSSHH
T ss_pred hhcCCeeEEccccCcChhhcCCCEEEEEeCCHh
Confidence 2221344443333332 3567888886544
No 322
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.77 E-value=0.0003 Score=71.47 Aligned_cols=99 Identities=25% Similarity=0.426 Sum_probs=74.9
Q ss_pred CEEEECCChHHHHHHHHHhhCC--CeEEEEeecCcccc----c-------------------------------------
Q 011700 164 NAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCMA----R------------------------------------- 200 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l~----~------------------------------------- 200 (479)
+|+|||+|+.|+-+|..|++.| .+|+++++.+...+ +
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~ 82 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDSR 82 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeCC
Confidence 5899999999999999999985 99999997532100 0
Q ss_pred ----------cC---------------CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEE
Q 011700 201 ----------LF---------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVV 255 (479)
Q Consensus 201 ----------~~---------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi 255 (479)
.+ ...+.+.+.+.+++.|++++.++++++++.+ ++. ..+.+.+|+++.+|.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~-v~v~~~~g~~~~ad~vI 160 (403)
T PRK07333 83 TSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETR-DEG-VTVTLSDGSVLEARLLV 160 (403)
T ss_pred CCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEc-CCE-EEEEECCCCEEEeCEEE
Confidence 00 0234455666677789999999999999863 333 35777888899999999
Q ss_pred EecCCCCCh
Q 011700 256 VGIGIRPNT 264 (479)
Q Consensus 256 ~a~G~~p~~ 264 (479)
.|.|..+..
T Consensus 161 ~AdG~~S~v 169 (403)
T PRK07333 161 AADGARSKL 169 (403)
T ss_pred EcCCCChHH
Confidence 999987654
No 323
>PLN02985 squalene monooxygenase
Probab=97.76 E-value=0.00013 Score=76.39 Aligned_cols=35 Identities=29% Similarity=0.382 Sum_probs=32.2
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
.+||+|||||++|+++|..|++.|.+ |+|+|+.+.
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~---V~vlEr~~~ 77 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRR---VHVIERDLR 77 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCe---EEEEECcCC
Confidence 58999999999999999999999987 999999753
No 324
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.76 E-value=0.00012 Score=76.35 Aligned_cols=82 Identities=26% Similarity=0.262 Sum_probs=65.0
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 240 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~ 240 (479)
.+++++|+|+|.+|+++|..|.++|.+|+++++.+. +....+.+.+++.||+++.+..+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~--------~~~~~~~~~l~~~gv~~~~~~~~~------------ 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD--------ERHRALAAILEALGATVRLGPGPT------------ 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch--------hhhHHHHHHHHHcCCEEEECCCcc------------
Confidence 468999999999999999999999999999986542 233445667888999998776432
Q ss_pred EEeCCCcEEeccEEEEecCCCCChhhhh
Q 011700 241 VNLRDGNRLPTDMVVVGIGIRPNTSLFE 268 (479)
Q Consensus 241 v~~~~g~~i~~D~Vi~a~G~~p~~~l~~ 268 (479)
....+|.||+++|..|+.+++.
T Consensus 75 ------~~~~~D~Vv~s~Gi~~~~~~~~ 96 (480)
T PRK01438 75 ------LPEDTDLVVTSPGWRPDAPLLA 96 (480)
T ss_pred ------ccCCCCEEEECCCcCCCCHHHH
Confidence 1245899999999999998653
No 325
>PRK06184 hypothetical protein; Provisional
Probab=97.76 E-value=0.00031 Score=73.60 Aligned_cols=100 Identities=16% Similarity=0.250 Sum_probs=74.0
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc------------------------------------------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------------ 200 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------ 200 (479)
-.|+|||+|+.|+-+|..|++.|.+|+++++.+.+...
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 83 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGSV 83 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCceE
Confidence 46999999999999999999999999999976321100
Q ss_pred ---------------------cCC-HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe---CCCcEEeccEEE
Q 011700 201 ---------------------LFT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGNRLPTDMVV 255 (479)
Q Consensus 201 ---------------------~~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~---~~g~~i~~D~Vi 255 (479)
.++ ..+.+.+.+.+++.|++++.++++.+++.++++ + .+.+ .+++++.+|.||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~-v-~v~~~~~~~~~~i~a~~vV 161 (502)
T PRK06184 84 AESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADG-V-TARVAGPAGEETVRARYLV 161 (502)
T ss_pred EEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCc-E-EEEEEeCCCeEEEEeCEEE
Confidence 000 112345566677789999999999999874444 2 3444 456789999999
Q ss_pred EecCCCCCh
Q 011700 256 VGIGIRPNT 264 (479)
Q Consensus 256 ~a~G~~p~~ 264 (479)
.|.|.....
T Consensus 162 gADG~~S~v 170 (502)
T PRK06184 162 GADGGRSFV 170 (502)
T ss_pred ECCCCchHH
Confidence 999987643
No 326
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00037 Score=67.48 Aligned_cols=99 Identities=16% Similarity=0.290 Sum_probs=73.9
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCe-EEEEeecCc---------------cccccCCHHHHHHHHHHHHhCCcEEEcCCc
Q 011700 163 GNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAH---------------CMARLFTPKIASYYEEYYKSKGVKFVKGTV 226 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~-Vtlv~~~~~---------------~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~ 226 (479)
-.++|||+|+.|+-.|-.+.+.+.+ +.+++.... +-.....+++.+.+.++.+..|+++.. ..
T Consensus 4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~ 82 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE 82 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EE
Confidence 4699999999999999999999988 444443211 011123577888888888889999987 56
Q ss_pred eEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700 227 LSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 227 v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~ 265 (479)
+.+++..++ ...|.+.+++ +.++.||+|+|..+...
T Consensus 83 v~~v~~~~~--~F~v~t~~~~-~~ak~vIiAtG~~~~~~ 118 (305)
T COG0492 83 VEKVELEGG--PFKVKTDKGT-YEAKAVIIATGAGARKL 118 (305)
T ss_pred EEEEeecCc--eEEEEECCCe-EEEeEEEECcCCcccCC
Confidence 777765222 5568888887 99999999999876654
No 327
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.74 E-value=6.9e-05 Score=76.85 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCc-----EEeccEEEEecCCCCC
Q 011700 203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-----RLPTDMVVVGIGIRPN 263 (479)
Q Consensus 203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~-----~i~~D~Vi~a~G~~p~ 263 (479)
|..+.-.......++|-++++.++|+++.. +++ +..|+..|.. ++.++.||.|+|.-..
T Consensus 163 daRLv~~~a~~A~~~Ga~il~~~~v~~~~r-e~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d 226 (532)
T COG0578 163 DARLVAANARDAAEHGAEILTYTRVESLRR-EGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVD 226 (532)
T ss_pred hHHHHHHHHHHHHhcccchhhcceeeeeee-cCC-EEEEEEEecCCCcEEEEEcCEEEECCCccHH
Confidence 455666666677889999999999999987 444 7788876532 5889999999996543
No 328
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.73 E-value=0.00039 Score=71.28 Aligned_cols=98 Identities=20% Similarity=0.343 Sum_probs=72.2
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc------------------cc-----cC-----------------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM------------------AR-----LF----------------- 202 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l------------------~~-----~~----------------- 202 (479)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+.+. +. .+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSA 85 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCCc
Confidence 469999999999999999999999999999763211 00 00
Q ss_pred ---------------------CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCC
Q 011700 203 ---------------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR 261 (479)
Q Consensus 203 ---------------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~ 261 (479)
-.++.+.+.+..++.|++++.+++|++++. +++.+..+. .++.++.+|.||.|.|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~-~~g~v~~v~-~~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 86 MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQ-RDGKVVGVE-ADGDVIEAKTVILADGVN 163 (428)
T ss_pred eeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEE-eCCEEEEEE-cCCcEEECCEEEEEeCCC
Confidence 011223455566778999999999999876 355554443 567789999999999974
Q ss_pred C
Q 011700 262 P 262 (479)
Q Consensus 262 p 262 (479)
.
T Consensus 164 s 164 (428)
T PRK10157 164 S 164 (428)
T ss_pred H
Confidence 3
No 329
>PRK07588 hypothetical protein; Provisional
Probab=97.73 E-value=0.00035 Score=70.78 Aligned_cols=99 Identities=15% Similarity=0.137 Sum_probs=72.1
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc---------c----------------------------------
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA---------R---------------------------------- 200 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------~---------------------------------- 200 (479)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.... .
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK 81 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence 689999999999999999999999999987643210 0
Q ss_pred -cCC-----------------HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700 201 -LFT-----------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 262 (479)
Q Consensus 201 -~~~-----------------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p 262 (479)
.++ .++.+.+.+.+ ..++++++++++++++.+ ++.+ .+.+++|+++.+|.||-|-|...
T Consensus 82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~-~~~v-~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEH-RDGV-RVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred EEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEEC-CCeE-EEEECCCCEEEeCEEEECCCCCc
Confidence 000 01122222223 347999999999999874 3333 57888999999999999999876
Q ss_pred Chh
Q 011700 263 NTS 265 (479)
Q Consensus 263 ~~~ 265 (479)
.+.
T Consensus 159 ~vR 161 (391)
T PRK07588 159 HVR 161 (391)
T ss_pred cch
Confidence 653
No 330
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.73 E-value=8e-05 Score=81.82 Aligned_cols=94 Identities=22% Similarity=0.283 Sum_probs=69.8
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc-------cc-cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEE
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 232 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~ 232 (479)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+- +. .++.++.+...+.+++.||+|+.++.+..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~--- 506 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGK--- 506 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC---
Confidence 46789999999999999999999999999999865321 11 13556666666778899999999875411
Q ss_pred cCCCcEEEEEeCCCcEEeccEEEEecCC-CCCh
Q 011700 233 DSNGKVVAVNLRDGNRLPTDMVVVGIGI-RPNT 264 (479)
Q Consensus 233 ~~~g~v~~v~~~~g~~i~~D~Vi~a~G~-~p~~ 264 (479)
.+.+.+.....+|.|++|+|. .|..
T Consensus 507 -------~v~~~~l~~~~ydavvlAtGa~~~~~ 532 (752)
T PRK12778 507 -------TITIEELEEEGFKGIFIASGAGLPNF 532 (752)
T ss_pred -------cCCHHHHhhcCCCEEEEeCCCCCCCC
Confidence 133334345669999999998 4654
No 331
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.72 E-value=0.00012 Score=81.03 Aligned_cols=91 Identities=19% Similarity=0.174 Sum_probs=66.0
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc-------c-cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEc
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------R-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVD 233 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~ 233 (479)
+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+-. . ..+.+..+...+.+++.||++++++.. .
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~-d---- 611 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSP-D---- 611 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEeccc-c----
Confidence 57899999999999999999999999999998764311 1 124455555556778889999987421 1
Q ss_pred CCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700 234 SNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 264 (479)
Q Consensus 234 ~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~ 264 (479)
+.+.+.+...+|.|++|+|..+..
T Consensus 612 -------~~ve~l~~~gYDaVIIATGA~~~~ 635 (1012)
T TIGR03315 612 -------LTVAELKNQGYKYVILAIGAWKHG 635 (1012)
T ss_pred -------eEhhhhhcccccEEEECCCCCCCC
Confidence 112222345689999999987543
No 332
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.68 E-value=9.8e-05 Score=76.63 Aligned_cols=90 Identities=19% Similarity=0.261 Sum_probs=67.4
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc--------cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEc
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVD 233 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~--------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~ 233 (479)
+++++|||+|+.|+.+|..|++.|.+|+++++.+.+... .++.++.....+.+++.||+++.++.+.. .
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-~-- 219 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK-D-- 219 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC-c--
Confidence 578999999999999999999999999999987654210 13556666666778899999999876531 1
Q ss_pred CCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700 234 SNGKVVAVNLRDGNRLPTDMVVVGIGIRP 262 (479)
Q Consensus 234 ~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p 262 (479)
+.. +.....+|.|++|+|..+
T Consensus 220 -------~~~-~~~~~~~d~vvlAtGa~~ 240 (471)
T PRK12810 220 -------ITA-EELLAEYDAVFLGTGAYK 240 (471)
T ss_pred -------CCH-HHHHhhCCEEEEecCCCC
Confidence 000 111347899999999873
No 333
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.68 E-value=0.00071 Score=71.74 Aligned_cols=103 Identities=19% Similarity=0.297 Sum_probs=72.7
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc-----------------------------------------
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------------- 200 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------- 200 (479)
..+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+...
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 102 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE 102 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence 357999999999999999999999999999877421000
Q ss_pred -----c-------------CC-HHHHHHHHHHHHhC-CcEEEcCCceEEEEEcCCCcEEEEEeCCCc-EEeccEEEEecC
Q 011700 201 -----L-------------FT-PKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIG 259 (479)
Q Consensus 201 -----~-------------~~-~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~-~i~~D~Vi~a~G 259 (479)
. +. ..+.+.+.+.+++. ++++++++++++++.++++....+...+++ ++.+|.||.|.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG 182 (547)
T PRK08132 103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDG 182 (547)
T ss_pred EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCC
Confidence 0 00 11223344455554 799999999999987544432233334554 699999999999
Q ss_pred CCCCh
Q 011700 260 IRPNT 264 (479)
Q Consensus 260 ~~p~~ 264 (479)
.....
T Consensus 183 ~~S~v 187 (547)
T PRK08132 183 ARSPL 187 (547)
T ss_pred CCcHH
Confidence 88765
No 334
>PLN02546 glutathione reductase
Probab=97.67 E-value=0.00019 Score=75.58 Aligned_cols=99 Identities=19% Similarity=0.181 Sum_probs=69.3
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||+.|+..|..|++.+.+ |+++++.+.. + +.+. ........+.+++
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~---Vtlv~~~~~i-----------l--------~~~d----~~~~~~l~~~L~~ 305 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSD---VHVFIRQKKV-----------L--------RGFD----EEVRDFVAEQMSL 305 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCe---EEEEEecccc-----------c--------cccC----HHHHHHHHHHHHH
Confidence 46899999999999999999988765 9999877421 0 0000 0111234566788
Q ss_pred cCcEEEeCceEEEEECC-CcE--EEeCCCcEEEeceEEeecCCCcccc
Q 011700 84 HGIELVLGTRVKSADVR-RKT--LVTATGETISYKILIIATGARALKL 128 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~-~~~--v~~~~g~~~~~d~lviAtG~~~~~~ 128 (479)
.||+++.++.+.++... +.. +...+++...+|.+++|+|.+|...
T Consensus 306 ~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 306 RGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred CCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCC
Confidence 99999999999888642 232 3334444445899999999998653
No 335
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.67 E-value=0.00035 Score=69.27 Aligned_cols=102 Identities=25% Similarity=0.376 Sum_probs=72.9
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc---------------------------------------c---
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR---------------------------------------L--- 201 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~---------------------------------------~--- 201 (479)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+... .
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~ 82 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD 82 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence 5899999999999999999999999999987221100 0
Q ss_pred -------------------------C-CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC-CC--cEEecc
Q 011700 202 -------------------------F-TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DG--NRLPTD 252 (479)
Q Consensus 202 -------------------------~-~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~-~g--~~i~~D 252 (479)
+ -.++.+.+.+.+++.|++++.++++..++.+.++....+... +| +++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~ad 162 (356)
T PF01494_consen 83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEAD 162 (356)
T ss_dssp SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEES
T ss_pred ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEe
Confidence 0 135667777888888999999999999987555433233333 34 368999
Q ss_pred EEEEecCCCCChh
Q 011700 253 MVVVGIGIRPNTS 265 (479)
Q Consensus 253 ~Vi~a~G~~p~~~ 265 (479)
+||-|-|....+.
T Consensus 163 lvVgADG~~S~vR 175 (356)
T PF01494_consen 163 LVVGADGAHSKVR 175 (356)
T ss_dssp EEEE-SGTT-HHH
T ss_pred eeecccCcccchh
Confidence 9999999887654
No 336
>PRK05868 hypothetical protein; Validated
Probab=97.67 E-value=0.00032 Score=70.51 Aligned_cols=101 Identities=21% Similarity=0.187 Sum_probs=72.6
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc------------------------------------------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------------ 200 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------ 200 (479)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 47999999999999999999999999999976332100
Q ss_pred --cCC--H---------H---HHHHHHHHHH---hCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCC
Q 011700 201 --LFT--P---------K---IASYYEEYYK---SKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR 261 (479)
Q Consensus 201 --~~~--~---------~---~~~~~~~~l~---~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~ 261 (479)
... . . ....+.+.|. ..|+++++++++++++.+ ++. ..+.+.||+++.+|+||-|-|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~-~~~-v~v~~~dg~~~~adlvIgADG~~ 159 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDD-GDS-VRVTFERAAAREFDLVIGADGLH 159 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEec-CCe-EEEEECCCCeEEeCEEEECCCCC
Confidence 000 0 0 0112222222 358999999999999863 333 35888999999999999999987
Q ss_pred CChh
Q 011700 262 PNTS 265 (479)
Q Consensus 262 p~~~ 265 (479)
....
T Consensus 160 S~vR 163 (372)
T PRK05868 160 SNVR 163 (372)
T ss_pred chHH
Confidence 7654
No 337
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.67 E-value=0.00049 Score=70.21 Aligned_cols=102 Identities=18% Similarity=0.321 Sum_probs=71.3
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc----cc-------------------------------------
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM----AR------------------------------------- 200 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l----~~------------------------------------- 200 (479)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+..- ++
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 97 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD 97 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence 3579999999999999999999999999999764210 00
Q ss_pred -----cC---------------CHHHHHHHHHHHHhC-CcEEEcCCceEEEEEcCCCcEEEEEeCC--C-cEEeccEEEE
Q 011700 201 -----LF---------------TPKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRD--G-NRLPTDMVVV 256 (479)
Q Consensus 201 -----~~---------------~~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~g~v~~v~~~~--g-~~i~~D~Vi~ 256 (479)
.+ ...+.+.+.+.+.+. +|+++.++++++++.++++ + .+.+.+ + .++.+|+||.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~-~-~v~~~~~~~~~~i~adlvIg 175 (415)
T PRK07364 98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA-A-TVTLEIEGKQQTLQSKLVVA 175 (415)
T ss_pred CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-e-EEEEccCCcceEEeeeEEEE
Confidence 00 012233334444443 7999999999999874333 2 355553 2 3699999999
Q ss_pred ecCCCCChh
Q 011700 257 GIGIRPNTS 265 (479)
Q Consensus 257 a~G~~p~~~ 265 (479)
|.|......
T Consensus 176 ADG~~S~vR 184 (415)
T PRK07364 176 ADGARSPIR 184 (415)
T ss_pred eCCCCchhH
Confidence 999877553
No 338
>PLN02697 lycopene epsilon cyclase
Probab=97.67 E-value=0.00045 Score=72.08 Aligned_cols=98 Identities=20% Similarity=0.262 Sum_probs=71.2
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccccc-----------------------------------------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL----------------------------------------- 201 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~----------------------------------------- 201 (479)
-.|+|||+|+.|+.+|..|++.|.+|.++++...+....
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~ 188 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR 188 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence 479999999999999999999999999998642211100
Q ss_pred CC-HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700 202 FT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 262 (479)
Q Consensus 202 ~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p 262 (479)
++ ..+.+.+.+.+.+.|+++ .+++|++++.+++ .+..+.+.+|.++.++.||.|+|..+
T Consensus 189 V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~-~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 189 VSRTLLHEELLRRCVESGVSY-LSSKVDRITEASD-GLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred EcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCC-cEEEEEEcCCcEEECCEEEECCCcCh
Confidence 00 123344555666779998 5678899876333 33334567888999999999999876
No 339
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.66 E-value=0.00011 Score=79.23 Aligned_cols=92 Identities=20% Similarity=0.302 Sum_probs=69.9
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc--------cccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEE
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--------ARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 232 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l--------~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~ 232 (479)
.+++++|||+|+.|+..|..|++.|.+|+++++.+.+. +..++.++.+...+.+++.||++++++.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 385 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR--- 385 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC---
Confidence 36899999999999999999999999999999887532 1124667777667888999999999986531
Q ss_pred cCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700 233 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 263 (479)
Q Consensus 233 ~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~ 263 (479)
+ +.+.+ ....+|.|++|+|..+.
T Consensus 386 --~-----~~~~~-l~~~~DaV~latGa~~~ 408 (639)
T PRK12809 386 --D-----ITFSD-LTSEYDAVFIGVGTYGM 408 (639)
T ss_pred --c-----CCHHH-HHhcCCEEEEeCCCCCC
Confidence 1 11111 13468999999998654
No 340
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.66 E-value=0.00063 Score=68.57 Aligned_cols=98 Identities=14% Similarity=0.290 Sum_probs=72.5
Q ss_pred CEEEECCChHHHHHHHHHhhCC-CeEEEEeecCccccc--------cC--------------------------------
Q 011700 164 NAVVIGGGYIGMECAASLVINK-INVTMVFPEAHCMAR--------LF-------------------------------- 202 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g-~~Vtlv~~~~~~l~~--------~~-------------------------------- 202 (479)
.|+|||+|+.|+-+|..|++.| .+|+++++.+..... .+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 3899999999999999999999 999999876421100 00
Q ss_pred -----------------------CHHHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEec
Q 011700 203 -----------------------TPKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI 258 (479)
Q Consensus 203 -----------------------~~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~ 258 (479)
-.++.+.+.+.+.+ .|++++.++++++++.++++ + .+.+.+|+++.+|.||.|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~-~-~v~~~~g~~~~ad~vV~Ad 158 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY-V-RVTLDNGQQLRAKLLIAAD 158 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe-E-EEEECCCCEEEeeEEEEec
Confidence 01233344455555 49999999999999874333 3 4777888899999999999
Q ss_pred CCCCC
Q 011700 259 GIRPN 263 (479)
Q Consensus 259 G~~p~ 263 (479)
|....
T Consensus 159 G~~S~ 163 (382)
T TIGR01984 159 GANSK 163 (382)
T ss_pred CCChH
Confidence 97654
No 341
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.65 E-value=0.00071 Score=68.35 Aligned_cols=99 Identities=24% Similarity=0.353 Sum_probs=73.9
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc---------------------cc-C------------------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA---------------------RL-F------------------ 202 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------------------~~-~------------------ 202 (479)
-+|+|||+|+.|+-+|..|.+.|.+|+++++.+.... .. +
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 85 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF 85 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence 4799999999999999999999999999997744211 00 0
Q ss_pred ------------------------CHHHHHHHHHHHHhCC-cEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEe
Q 011700 203 ------------------------TPKIASYYEEYYKSKG-VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG 257 (479)
Q Consensus 203 ------------------------~~~~~~~~~~~l~~~G-V~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a 257 (479)
...+.+.+.+.+++.| ++++ +.++++++..++ . ..+.+.+|+++.+|.||.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~-~-~~v~~~~g~~~~a~~vI~a 162 (388)
T PRK07608 86 GDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPD-A-ATLTLADGQVLRADLVVGA 162 (388)
T ss_pred ECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCC-e-EEEEECCCCEEEeeEEEEe
Confidence 1123344556667777 9988 888999876333 3 3577888888999999999
Q ss_pred cCCCCCh
Q 011700 258 IGIRPNT 264 (479)
Q Consensus 258 ~G~~p~~ 264 (479)
.|.....
T Consensus 163 dG~~S~v 169 (388)
T PRK07608 163 DGAHSWV 169 (388)
T ss_pred CCCCchH
Confidence 9987643
No 342
>PRK09126 hypothetical protein; Provisional
Probab=97.64 E-value=0.00062 Score=68.92 Aligned_cols=101 Identities=25% Similarity=0.364 Sum_probs=73.4
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc-------cc-----------------------------------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR----------------------------------- 200 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------~~----------------------------------- 200 (479)
-+|+|||+|+.|+-+|..|++.|.+|+++++.+..- .+
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~ 83 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKVL 83 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEEE
Confidence 469999999999999999999999999999764310 00
Q ss_pred --------cCC---------------HHHHHHHHHHH-HhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEE
Q 011700 201 --------LFT---------------PKIASYYEEYY-KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV 256 (479)
Q Consensus 201 --------~~~---------------~~~~~~~~~~l-~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~ 256 (479)
.++ ..+.+.+.+.+ +..|++++.++++++++.+ ++. ..+.+++|+++.+|.||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~-~~~-~~v~~~~g~~~~a~~vI~ 161 (392)
T PRK09126 84 NGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTD-DDG-AQVTLANGRRLTARLLVA 161 (392)
T ss_pred cCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEc-CCe-EEEEEcCCCEEEeCEEEE
Confidence 000 01122222333 3468999999999999873 333 357788899999999999
Q ss_pred ecCCCCChh
Q 011700 257 GIGIRPNTS 265 (479)
Q Consensus 257 a~G~~p~~~ 265 (479)
|.|..+...
T Consensus 162 AdG~~S~vr 170 (392)
T PRK09126 162 ADSRFSATR 170 (392)
T ss_pred eCCCCchhh
Confidence 999877654
No 343
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.64 E-value=0.00013 Score=82.08 Aligned_cols=92 Identities=23% Similarity=0.266 Sum_probs=68.5
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc-------cc-cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEc
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVD 233 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~ 233 (479)
+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. .++.++.+...+.+++.||++++++.+..
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~---- 505 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGK---- 505 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccCC----
Confidence 4789999999999999999999999999999876442 11 13567778888889999999999875411
Q ss_pred CCCcEEEEEeCCC-cEEeccEEEEecCCC-CC
Q 011700 234 SNGKVVAVNLRDG-NRLPTDMVVVGIGIR-PN 263 (479)
Q Consensus 234 ~~g~v~~v~~~~g-~~i~~D~Vi~a~G~~-p~ 263 (479)
+ +.+.+- +...+|.||+|||.. |.
T Consensus 506 -~-----~~~~~l~~~~~yDaViIATGa~~pr 531 (1006)
T PRK12775 506 -T-----FTVPQLMNDKGFDAVFLGVGAGAPT 531 (1006)
T ss_pred -c-----cCHHHHhhccCCCEEEEecCCCCCC
Confidence 1 111111 124589999999984 44
No 344
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.63 E-value=0.00067 Score=68.61 Aligned_cols=97 Identities=20% Similarity=0.310 Sum_probs=70.8
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc----------------------------c--------------
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------L-------------- 201 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------~-------------- 201 (479)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+... .
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 3899999999999999999999999999976432100 0
Q ss_pred -C-CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700 202 -F-TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 262 (479)
Q Consensus 202 -~-~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p 262 (479)
+ ...+.+.+.+.+.+.|++++ ..++..++.+ ++....+.+.+|+++.++.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~-~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEAD-GVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEec-CCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 0 02233455566677789886 4567888763 2333457778888999999999999876
No 345
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.63 E-value=0.00022 Score=76.30 Aligned_cols=98 Identities=15% Similarity=0.179 Sum_probs=67.8
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhH-HHH
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKW-YNE 83 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 83 (479)
.+++|||||+.|+..|..++++|.+ |++|++.+... +.+. ........+. +++
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~e---VTLIe~~~~ll-------------------~~~d----~eis~~l~~~ll~~ 366 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSE---VVSFEYSPQLL-------------------PLLD----ADVAKYFERVFLKS 366 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCe---EEEEeccCccc-------------------ccCC----HHHHHHHHHHHhhc
Confidence 5799999999999999999998876 99999875310 0000 0001122333 356
Q ss_pred cCcEEEeCceEEEEECCC--cEEE--eC-------CC--------cEEEeceEEeecCCCcccc
Q 011700 84 HGIELVLGTRVKSADVRR--KTLV--TA-------TG--------ETISYKILIIATGARALKL 128 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~--~~v~--~~-------~g--------~~~~~d~lviAtG~~~~~~ 128 (479)
.||+++.++.|.+++.++ +.+. +. ++ +++++|.+++|||.+|...
T Consensus 367 ~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~ 430 (659)
T PTZ00153 367 KPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTN 430 (659)
T ss_pred CCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCc
Confidence 899999999999987653 2232 21 11 3799999999999998753
No 346
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.63 E-value=0.00059 Score=70.30 Aligned_cols=58 Identities=26% Similarity=0.550 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700 205 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 263 (479)
Q Consensus 205 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~ 263 (479)
.+.+.+.+..+++||+++.++ |.++..+++|.+..|.+.+|+++++|.+|=|+|++..
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 455667777788999999885 7777776788899999999999999999999998654
No 347
>PRK08013 oxidoreductase; Provisional
Probab=97.61 E-value=0.00068 Score=68.87 Aligned_cols=101 Identities=20% Similarity=0.254 Sum_probs=73.5
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc---------------cc---------c-----------------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---------------AR---------L----------------- 201 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l---------------~~---------~----------------- 201 (479)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+.+. +. .
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~~ 83 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGMEV 83 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEEE
Confidence 479999999999999999999999999999764310 00 0
Q ss_pred ----------CC---------------HHHHHHHHHHHHhC-CcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEE
Q 011700 202 ----------FT---------------PKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVV 255 (479)
Q Consensus 202 ----------~~---------------~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi 255 (479)
++ ..+.+.+.+.+++. ||+++.++++++++.++++ ..+.+.+|+++.+|+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v~v~~~~g~~i~a~lvV 161 (400)
T PRK08013 84 WDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE--AFLTLKDGSMLTARLVV 161 (400)
T ss_pred EeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--EEEEEcCCCEEEeeEEE
Confidence 00 01122333444443 7999999999999874443 35677889999999999
Q ss_pred EecCCCCChh
Q 011700 256 VGIGIRPNTS 265 (479)
Q Consensus 256 ~a~G~~p~~~ 265 (479)
-|-|......
T Consensus 162 gADG~~S~vR 171 (400)
T PRK08013 162 GADGANSWLR 171 (400)
T ss_pred EeCCCCcHHH
Confidence 9999876553
No 348
>PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A ....
Probab=97.60 E-value=0.00094 Score=51.60 Aligned_cols=74 Identities=24% Similarity=0.338 Sum_probs=57.9
Q ss_pred eEEEeecCcceEeecCCC--ceEEEEccCCCCceEEEEccCCEEEEEEEeCCCHHHHHHHHHHHHcCCCcCcHHHHhh
Q 011700 342 FFYSRVFTLSWQFYGDNV--GEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELET 417 (479)
Q Consensus 342 ~~~~~~~~~~~~~~G~~~--~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~g~~~~e~~~~~~~i~~~~~~~dl~~~~~ 417 (479)
||||.+++..++++|... ++.+..++.....|..++.++|+++|+..+|. +.++..+..+|+.+..++ -+.+..
T Consensus 1 ~FWSdQ~~~~iq~~G~~~~~~~~v~rg~~~~~~~~~~y~~~g~lva~~~vn~-~~~~~~~rrli~~~~~~~-~~~l~d 76 (85)
T PF14759_consen 1 WFWSDQYGVRIQIAGLPGGADEVVVRGDPESGKFVAFYLRDGRLVAAVSVNR-PRDLRAARRLIAAGARVD-PARLAD 76 (85)
T ss_dssp EEEEEETTEEEEEEE-STTSSEEEEEEETTTTEEEEEEEETTEEEEEEEES--HHHHHHHHHHHHTT-B---HHHHHS
T ss_pred CeecccCCCeEEEEECCCCCCEEEEEccCCCCcEEEEEEcCCEEEEEEecCC-HHHHHHHHHHHHCCCCcC-HHHhcC
Confidence 689999999999999754 45677888777889888889999999999995 678888899999998775 455543
No 349
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.60 E-value=0.00075 Score=71.36 Aligned_cols=102 Identities=20% Similarity=0.247 Sum_probs=73.2
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc-----------------------------------------
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------------- 200 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------- 200 (479)
..+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+...
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~ 89 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR 89 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence 457999999999999999999999999999977321000
Q ss_pred ---cCC-----------------HHHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEEEEeC--CC--cEEeccEEE
Q 011700 201 ---LFT-----------------PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLR--DG--NRLPTDMVV 255 (479)
Q Consensus 201 ---~~~-----------------~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~v~~~--~g--~~i~~D~Vi 255 (479)
.++ +++.+.+.+.+.+ .|++++.++++++++.++++ + .+.+. +| +++.+|.||
T Consensus 90 ~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~-v-~v~~~~~~G~~~~i~ad~vV 167 (538)
T PRK06183 90 CLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDG-V-TVTLTDADGQRETVRARYVV 167 (538)
T ss_pred EEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCe-E-EEEEEcCCCCEEEEEEEEEE
Confidence 000 1222334444544 48999999999999885544 2 34444 56 479999999
Q ss_pred EecCCCCChh
Q 011700 256 VGIGIRPNTS 265 (479)
Q Consensus 256 ~a~G~~p~~~ 265 (479)
-|.|.+....
T Consensus 168 gADG~~S~vR 177 (538)
T PRK06183 168 GCDGANSFVR 177 (538)
T ss_pred ecCCCchhHH
Confidence 9999877653
No 350
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.60 E-value=0.00074 Score=68.22 Aligned_cols=101 Identities=16% Similarity=0.243 Sum_probs=72.0
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc--cc---c---c--cCCH----------------------------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH--CM---A---R--LFTP---------------------------- 204 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~--~l---~---~--~~~~---------------------------- 204 (479)
-+|+|||+|+.|+-+|..|++.|.+|+++++.+. +. + + .+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~ 83 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET 83 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence 3699999999999999999999999999996531 00 0 0 0000
Q ss_pred ---------------------------HHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEE
Q 011700 205 ---------------------------KIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV 256 (479)
Q Consensus 205 ---------------------------~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~ 256 (479)
.+...+.+.+++ .+++++.++++++++.++++ ..+.+.+|+++.+|+||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~~~lvIg 161 (384)
T PRK08849 84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG--NRVTLESGAEIEAKWVIG 161 (384)
T ss_pred EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe--EEEEECCCCEEEeeEEEE
Confidence 001112222222 36999999999999874443 357888999999999999
Q ss_pred ecCCCCChh
Q 011700 257 GIGIRPNTS 265 (479)
Q Consensus 257 a~G~~p~~~ 265 (479)
|.|..+...
T Consensus 162 ADG~~S~vR 170 (384)
T PRK08849 162 ADGANSQVR 170 (384)
T ss_pred ecCCCchhH
Confidence 999987764
No 351
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.59 E-value=0.00024 Score=75.62 Aligned_cols=65 Identities=18% Similarity=0.312 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC-Cc--EEec-cEEEEecCC-CCChhhhh
Q 011700 203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-GN--RLPT-DMVVVGIGI-RPNTSLFE 268 (479)
Q Consensus 203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~-g~--~i~~-D~Vi~a~G~-~p~~~l~~ 268 (479)
...+...+.+.+++.||+++.++.+.++.. +++++..|...+ ++ ++.+ +.||+|+|- ..|.++++
T Consensus 220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~~ 289 (578)
T PRK12843 220 GNALIGRLLYSLRARGVRILTQTDVESLET-DHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLRR 289 (578)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEe-eCCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHHH
Confidence 566778888889999999999999999876 467787776644 33 4676 689999984 44545544
No 352
>PRK06753 hypothetical protein; Provisional
Probab=97.59 E-value=0.00043 Score=69.56 Aligned_cols=100 Identities=19% Similarity=0.250 Sum_probs=70.4
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc----cCCHHH---------------------------------
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----LFTPKI--------------------------------- 206 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~----~~~~~~--------------------------------- 206 (479)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+... .+.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~ 81 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence 6899999999999999999999999999987532110 000000
Q ss_pred ---------------HHHHHHHHHh--CCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700 207 ---------------ASYYEEYYKS--KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 207 ---------------~~~~~~~l~~--~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~ 265 (479)
...+.+.|.+ .+.++++++++++++.+ ++.+ .+.+.+|+++.+|+||-|-|....+.
T Consensus 82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~-~~~v-~v~~~~g~~~~~~~vigadG~~S~vR 155 (373)
T PRK06753 82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENE-TDKV-TIHFADGESEAFDLCIGADGIHSKVR 155 (373)
T ss_pred eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEec-CCcE-EEEECCCCEEecCEEEECCCcchHHH
Confidence 0112222222 24578899999999863 3433 57788999999999999999776554
No 353
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.59 E-value=0.00059 Score=71.58 Aligned_cols=95 Identities=20% Similarity=0.289 Sum_probs=69.2
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeecC-cc-----------------------ccc-------------------
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEA-HC-----------------------MAR------------------- 200 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~-----------------------l~~------------------- 200 (479)
.|+|||||+.|++.|..+++.|.+|.++++.. .+ +..
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~s 85 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNTS 85 (618)
T ss_pred eEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeecccC
Confidence 59999999999999999999999999998863 11 000
Q ss_pred ----------cCCH-HHHHHHHHHHHhC-CcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC
Q 011700 201 ----------LFTP-KIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI 260 (479)
Q Consensus 201 ----------~~~~-~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~ 260 (479)
.+|. .+...+.+.+++. |++++ ...+.++.. +++++..|.+.+|..+.|+.||+|+|.
T Consensus 86 kGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~-e~grV~GV~t~dG~~I~Ak~VIlATGT 155 (618)
T PRK05192 86 KGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIV-ENGRVVGVVTQDGLEFRAKAVVLTTGT 155 (618)
T ss_pred CCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEe-cCCEEEEEEECCCCEEECCEEEEeeCc
Confidence 0010 1123334444444 78876 445777765 467788899999999999999999994
No 354
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.59 E-value=0.00087 Score=67.53 Aligned_cols=99 Identities=18% Similarity=0.313 Sum_probs=73.4
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc-------c--cCC-------------------------------
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------R--LFT------------------------------- 203 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------~--~~~------------------------------- 203 (479)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+-. + .+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 389999999999999999999999999998753100 0 000
Q ss_pred -------------------------HHHHHHHHHHHHhCC-cEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEe
Q 011700 204 -------------------------PKIASYYEEYYKSKG-VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG 257 (479)
Q Consensus 204 -------------------------~~~~~~~~~~l~~~G-V~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a 257 (479)
..+.+.+.+.+++.| ++++.++++++++.+ ++.+ .+.+++|+++.+|.||.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~-~~~~-~v~~~~g~~~~~~~vi~a 158 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRH-SDHV-ELTLDDGQQLRARLLVGA 158 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEec-CCee-EEEECCCCEEEeeEEEEe
Confidence 112333444555666 999999999999863 3333 577889989999999999
Q ss_pred cCCCCCh
Q 011700 258 IGIRPNT 264 (479)
Q Consensus 258 ~G~~p~~ 264 (479)
.|.....
T Consensus 159 dG~~S~v 165 (385)
T TIGR01988 159 DGANSKV 165 (385)
T ss_pred CCCCCHH
Confidence 9987543
No 355
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.58 E-value=0.00058 Score=67.91 Aligned_cols=37 Identities=30% Similarity=0.381 Sum_probs=33.4
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA 42 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~ 42 (479)
+..||||||+|.+||+||.+|.+.|++ |+|+|..+..
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~---v~ilEar~r~ 42 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQ---VQILEARDRV 42 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcE---EEEEeccCCc
Confidence 357999999999999999999999998 8999998753
No 356
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.57 E-value=0.00018 Score=77.84 Aligned_cols=92 Identities=22% Similarity=0.332 Sum_probs=67.6
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc-------cc-cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEE
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 232 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~ 232 (479)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+- +. .++.++.+...+.+++.||+++.++.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 402 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK--- 402 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC---
Confidence 36899999999999999999999999999999876531 11 13566666667778889999999886521
Q ss_pred cCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700 233 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 263 (479)
Q Consensus 233 ~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~ 263 (479)
+ +.+.+ ....+|.|++|+|..+.
T Consensus 403 --~-----i~~~~-~~~~~DavilAtGa~~~ 425 (654)
T PRK12769 403 --D-----ISLES-LLEDYDAVFVGVGTYRS 425 (654)
T ss_pred --c-----CCHHH-HHhcCCEEEEeCCCCCC
Confidence 1 11111 12368999999997543
No 357
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.56 E-value=5.8e-05 Score=82.82 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=30.1
Q ss_pred eEEEECCchHHHHHHHHHHHc--CCCCCcEEEEcCCCC
Q 011700 6 VYVIVGGGVAAGYAALEFTKR--GVPPGELCIISEEPV 41 (479)
Q Consensus 6 dvvIIGgG~aGl~aA~~l~~~--g~~~~~V~lie~~~~ 41 (479)
+|+||||||||+++|..|++. |++ |+|+|+.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~---V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHE---VTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCe---EEEEecCCC
Confidence 899999999999999999997 666 999999874
No 358
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.56 E-value=0.00044 Score=65.51 Aligned_cols=35 Identities=29% Similarity=0.381 Sum_probs=32.5
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
.+||+|||+|.|||.||.+|+..|.+ |+++|++..
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~---V~ildQEge 39 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKR---VLILDQEGE 39 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCce---EEEEccccc
Confidence 58999999999999999999999998 899998865
No 359
>PRK07190 hypothetical protein; Provisional
Probab=97.55 E-value=0.00087 Score=69.78 Aligned_cols=100 Identities=19% Similarity=0.363 Sum_probs=74.1
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc----------------------------------------cc-
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA----------------------------------------RL- 201 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~----------------------------------------~~- 201 (479)
-.|+|||+|++|+-+|..|++.|.+|.++++.+.... ..
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i 85 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI 85 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence 4699999999999999999999999999987632100 00
Q ss_pred --------------------CC-HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC
Q 011700 202 --------------------FT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI 260 (479)
Q Consensus 202 --------------------~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~ 260 (479)
++ ..+.+.+.+.+++.|++++.++++++++.++++ + .+.+.+|+++.++.||.|.|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~-v-~v~~~~g~~v~a~~vVgADG~ 163 (487)
T PRK07190 86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAG-C-LTTLSNGERIQSRYVIGADGS 163 (487)
T ss_pred eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe-e-EEEECCCcEEEeCEEEECCCC
Confidence 00 112234455667789999999999999875444 2 355677889999999999998
Q ss_pred CCCh
Q 011700 261 RPNT 264 (479)
Q Consensus 261 ~p~~ 264 (479)
+...
T Consensus 164 ~S~v 167 (487)
T PRK07190 164 RSFV 167 (487)
T ss_pred CHHH
Confidence 6543
No 360
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.54 E-value=0.0016 Score=66.24 Aligned_cols=136 Identities=22% Similarity=0.248 Sum_probs=90.2
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc----------------------------------------ccc
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM----------------------------------------ARL 201 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l----------------------------------------~~~ 201 (479)
.++++|||+|++|+-.|..|.+.|.++++++|.+.+- ++.
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~ 85 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY 85 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCccc
Confidence 6899999999999999999999999999999884321 001
Q ss_pred C-C-HHHHHHHHHHHHhCCc--EEEcCCceEEEEEcCCCcEEEEEeCCC----cEEeccEEEEecCCC--CChhhhhcc-
Q 011700 202 F-T-PKIASYYEEYYKSKGV--KFVKGTVLSSFDVDSNGKVVAVNLRDG----NRLPTDMVVVGIGIR--PNTSLFEGQ- 270 (479)
Q Consensus 202 ~-~-~~~~~~~~~~l~~~GV--~i~~~~~v~~i~~~~~g~v~~v~~~~g----~~i~~D~Vi~a~G~~--p~~~l~~~~- 270 (479)
+ + .++.++++.+.++.++ .+.+++++.+++...+|+ ..|...++ ++.-+|.|++|+|-- |+.+.....
T Consensus 86 ~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gk-W~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~~ 164 (448)
T KOG1399|consen 86 FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGK-WRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGPG 164 (448)
T ss_pred CCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCc-eeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCCc
Confidence 1 1 2667778888887776 577888888888743233 34555443 367799999999976 665544331
Q ss_pred ccc-ccCcEEEcCcccC---CCCCeEEEeeec
Q 011700 271 LTL-EKGGIKVTGRLQS---SNSSVYAVGDVA 298 (479)
Q Consensus 271 ~~~-~~g~i~Vd~~l~t---~~~~IyA~GD~~ 298 (479)
+.. ....|..-++-.. ....|..+|--.
T Consensus 165 ~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~ 196 (448)
T KOG1399|consen 165 IESFKGKIIHSHDYKSPEKFRDKVVLVVGCGN 196 (448)
T ss_pred hhhcCCcceehhhccCcccccCceEEEECCCc
Confidence 222 3333333333222 346788888543
No 361
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.54 E-value=0.0019 Score=66.31 Aligned_cols=99 Identities=24% Similarity=0.362 Sum_probs=74.2
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCe-EEEEeecCccccc-----------------------cC------C--HHHHHH
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAHCMAR-----------------------LF------T--PKIASY 209 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~-Vtlv~~~~~~l~~-----------------------~~------~--~~~~~~ 209 (479)
-.+|+|||+|.+|+-.|..|.+.|.. +.++++.+.+-.. .+ + .++.++
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y 87 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDY 87 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHH
Confidence 36799999999999999999999998 9999987422100 01 0 236778
Q ss_pred HHHHHHhCCcE--EEcCCceEEEEEcCCCcEEEEEeCCCcE--EeccEEEEecCC
Q 011700 210 YEEYYKSKGVK--FVKGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGI 260 (479)
Q Consensus 210 ~~~~l~~~GV~--i~~~~~v~~i~~~~~g~v~~v~~~~g~~--i~~D~Vi~a~G~ 260 (479)
+.+++++.++. +..++.|..+..++++....|.++++.+ +.+|.|++|+|.
T Consensus 88 ~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~ 142 (443)
T COG2072 88 IKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGH 142 (443)
T ss_pred HHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecC
Confidence 88888877754 4455666667766677777888888765 559999999996
No 362
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.52 E-value=0.0012 Score=66.81 Aligned_cols=100 Identities=18% Similarity=0.309 Sum_probs=73.4
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc----------------------------ccc-------------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM----------------------------ARL------------- 201 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l----------------------------~~~------------- 201 (479)
-+|+|||+|+.|+-+|..|++.|.+|+++++.+... ...
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 85 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLET 85 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEEE
Confidence 479999999999999999999999999998763100 000
Q ss_pred ---------C---------------CHHHHHHHHHHHHhC-CcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEE
Q 011700 202 ---------F---------------TPKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV 256 (479)
Q Consensus 202 ---------~---------------~~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~ 256 (479)
+ ...+.+.+.+.+++. |++++.++++.+++.++++ ..+.+.+++++.+|.||.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~ 163 (391)
T PRK08020 86 WEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG--WELTLADGEEIQAKLVIG 163 (391)
T ss_pred EeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe--EEEEECCCCEEEeCEEEE
Confidence 0 011223344445555 9999999999999863333 357778888999999999
Q ss_pred ecCCCCCh
Q 011700 257 GIGIRPNT 264 (479)
Q Consensus 257 a~G~~p~~ 264 (479)
|.|.....
T Consensus 164 AdG~~S~v 171 (391)
T PRK08020 164 ADGANSQV 171 (391)
T ss_pred eCCCCchh
Confidence 99987754
No 363
>PRK10015 oxidoreductase; Provisional
Probab=97.51 E-value=0.0012 Score=67.66 Aligned_cols=98 Identities=18% Similarity=0.359 Sum_probs=71.3
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc------------------cccc-----------------------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC------------------MARL----------------------- 201 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~------------------l~~~----------------------- 201 (479)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+.+ ++..
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEESA 85 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCCc
Confidence 36999999999999999999999999999876321 0100
Q ss_pred ----C----------------CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCC
Q 011700 202 ----F----------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR 261 (479)
Q Consensus 202 ----~----------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~ 261 (479)
+ -..+.+.+.+.+++.|++++.+++|+.+.. +++.+..+.. ++.++.+|.||.|.|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~-~~~~v~~v~~-~~~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 86 VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVR-EGNKVTGVQA-GDDILEANVVILADGVN 163 (429)
T ss_pred eEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEE-eCCEEEEEEe-CCeEEECCEEEEccCcc
Confidence 0 011222355666778999999999999876 3455544543 44689999999999975
Q ss_pred C
Q 011700 262 P 262 (479)
Q Consensus 262 p 262 (479)
.
T Consensus 164 s 164 (429)
T PRK10015 164 S 164 (429)
T ss_pred h
Confidence 4
No 364
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.51 E-value=0.0011 Score=67.47 Aligned_cols=101 Identities=20% Similarity=0.275 Sum_probs=72.2
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeec-Cccc------cc--cCC-----------------------------
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE-AHCM------AR--LFT----------------------------- 203 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~~l------~~--~~~----------------------------- 203 (479)
..+|+|||+|+.|+-+|..|.+.|.+|+++++. +... .+ .+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 357999999999999999999999999999974 1100 00 000
Q ss_pred ---------------------------HHHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEE
Q 011700 204 ---------------------------PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVV 255 (479)
Q Consensus 204 ---------------------------~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi 255 (479)
..+.+.+.+.+.+ .||+++.++++++++.++++ ..+.+.+|+++.+|+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~lvI 161 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE--AWLTLDNGQALTAKLVV 161 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe--EEEEECCCCEEEeCEEE
Confidence 0112223333433 47999999999999764333 35778899999999999
Q ss_pred EecCCCCCh
Q 011700 256 VGIGIRPNT 264 (479)
Q Consensus 256 ~a~G~~p~~ 264 (479)
.|-|.....
T Consensus 162 gADG~~S~v 170 (405)
T PRK08850 162 GADGANSWL 170 (405)
T ss_pred EeCCCCChh
Confidence 999976654
No 365
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.49 E-value=0.00025 Score=76.42 Aligned_cols=92 Identities=22% Similarity=0.302 Sum_probs=68.1
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc-------cc-cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEE
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 232 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~ 232 (479)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+.+. +. .++.++.+...+.+++.|+++++++.+. .+
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~d- 269 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-RD- 269 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-Cc-
Confidence 35789999999999999999999999999999886541 11 1356666666778888999999887541 11
Q ss_pred cCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700 233 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 263 (479)
Q Consensus 233 ~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~ 263 (479)
+.+.+. ...+|.|++|+|..+.
T Consensus 270 --------v~~~~~-~~~~DaVilAtGa~~~ 291 (652)
T PRK12814 270 --------ITLEEL-QKEFDAVLLAVGAQKA 291 (652)
T ss_pred --------cCHHHH-HhhcCEEEEEcCCCCC
Confidence 111111 2358999999998754
No 366
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.47 E-value=0.00049 Score=70.21 Aligned_cols=92 Identities=12% Similarity=0.186 Sum_probs=61.1
Q ss_pred CCCCEEEECCChHHHHHHHHH-hhCCCeEEEEeecCcccccc---C---C---HHHHHHHHHHHHhCCcEEEcCCceEEE
Q 011700 161 SGGNAVVIGGGYIGMECAASL-VINKINVTMVFPEAHCMARL---F---T---PKIASYYEEYYKSKGVKFVKGTVLSSF 230 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l-~~~g~~Vtlv~~~~~~l~~~---~---~---~~~~~~~~~~l~~~GV~i~~~~~v~~i 230 (479)
.+++|+|||+|+.|+.+|..| ++.|.+|+++++.+.+..-. . . ..+.+.+.+.+...+++++.+..+..
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~- 116 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV- 116 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC-
Confidence 478999999999999999975 46799999999987653210 0 1 23444555556667888875433211
Q ss_pred EEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700 231 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 263 (479)
Q Consensus 231 ~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~ 263 (479)
+ +..++= .-.+|.||+|+|..+.
T Consensus 117 ----D-----vt~eeL-~~~YDAVIlAtGA~~l 139 (506)
T PTZ00188 117 ----D-----LKMEEL-RNHYNCVIFCCGASEV 139 (506)
T ss_pred ----c-----cCHHHH-HhcCCEEEEEcCCCCC
Confidence 1 111111 2368999999998754
No 367
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.45 E-value=0.0022 Score=57.83 Aligned_cols=104 Identities=16% Similarity=0.209 Sum_probs=69.3
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccccc------C-------------------------------C
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------F-------------------------------T 203 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~------~-------------------------------~ 203 (479)
..-.++|||+|+.|+-+|..|++.|.+|.+++++..+-... | .
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~ 95 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADS 95 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-H
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcH
Confidence 45689999999999999999999999999999874321110 0 1
Q ss_pred HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC-----------CCcEEeccEEEEecCCCCCh
Q 011700 204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-----------DGNRLPTDMVVVGIGIRPNT 264 (479)
Q Consensus 204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~-----------~g~~i~~D~Vi~a~G~~p~~ 264 (479)
.+....+....-+.|++++..+.++.+-..++.++..+..+ |--.+++..|+=|||...+.
T Consensus 96 ~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v 167 (230)
T PF01946_consen 96 VEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEV 167 (230)
T ss_dssp HHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSS
T ss_pred HHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHH
Confidence 22333333334458999999999998876444777777653 22479999999999987765
No 368
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.45 E-value=0.0015 Score=61.57 Aligned_cols=63 Identities=14% Similarity=0.132 Sum_probs=42.8
Q ss_pred HHHHHHHHhCCcEEEcCCceEEEEEcCCC---cEEEEEeCCCcEEeccEEEEecCCCCChhhhhcc
Q 011700 208 SYYEEYYKSKGVKFVKGTVLSSFDVDSNG---KVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ 270 (479)
Q Consensus 208 ~~~~~~l~~~GV~i~~~~~v~~i~~~~~g---~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~~ 270 (479)
..+.+.++..|-++.++-+++.+..+.++ -...|....++++.+..++-++|...+.--..++
T Consensus 200 ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~sg 265 (453)
T KOG2665|consen 200 LSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAALSG 265 (453)
T ss_pred HHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHHHhC
Confidence 33445578888899999998888765443 2223333446789999999999987665433333
No 369
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.44 E-value=0.00015 Score=75.02 Aligned_cols=36 Identities=17% Similarity=0.291 Sum_probs=33.2
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
++++|||||||+|||+||++|.+.|++ |+|+|....
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~---V~VLEARdR 49 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFD---VLVLEARDR 49 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCc---eEEEeccCC
Confidence 357999999999999999999999998 999999875
No 370
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.44 E-value=0.0014 Score=65.95 Aligned_cols=99 Identities=13% Similarity=0.248 Sum_probs=71.7
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeecC----ccc--cc--cC---------------------------------
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEA----HCM--AR--LF--------------------------------- 202 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~----~~l--~~--~~--------------------------------- 202 (479)
+|+|||+|+.|+-+|..|++.|.+|+++++.+ .+. .+ .+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 82 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDNK 82 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEECC
Confidence 58999999999999999999999999999641 100 00 00
Q ss_pred --------------------CHHHHHHHHHHHHhCC-cEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCC
Q 011700 203 --------------------TPKIASYYEEYYKSKG-VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR 261 (479)
Q Consensus 203 --------------------~~~~~~~~~~~l~~~G-V~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~ 261 (479)
-.++.+.+.+.+++.+ ++++.++++++++.++++ + .+.+.++ ++.+|+||-|-|..
T Consensus 83 g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v-~v~~~~~-~~~adlvIgADG~~ 159 (374)
T PRK06617 83 ASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY-S-IIKFDDK-QIKCNLLIICDGAN 159 (374)
T ss_pred CceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe-E-EEEEcCC-EEeeCEEEEeCCCC
Confidence 0223444455555554 899999999999874433 3 4777766 89999999999988
Q ss_pred CChh
Q 011700 262 PNTS 265 (479)
Q Consensus 262 p~~~ 265 (479)
....
T Consensus 160 S~vR 163 (374)
T PRK06617 160 SKVR 163 (374)
T ss_pred chhH
Confidence 7654
No 371
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.41 E-value=0.00035 Score=67.48 Aligned_cols=98 Identities=18% Similarity=0.294 Sum_probs=73.4
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
+.+++|||+|.-||..+.-..|+|.+ ||++|-.+...- .+ ..+......+.+.+
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGse---VT~VEf~~~i~~-------------------~m----D~Eisk~~qr~L~k 264 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSE---VTVVEFLDQIGG-------------------VM----DGEISKAFQRVLQK 264 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCe---EEEEEehhhhcc-------------------cc----CHHHHHHHHHHHHh
Confidence 46899999999999999999999877 999987753110 00 01122445677888
Q ss_pred cCcEEEeCceEEEEECCCc-EE--EeC---CC--cEEEeceEEeecCCCccc
Q 011700 84 HGIELVLGTRVKSADVRRK-TL--VTA---TG--ETISYKILIIATGARALK 127 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~-~v--~~~---~g--~~~~~d~lviAtG~~~~~ 127 (479)
.|++|.++++|..++++.. .| .+. ++ +++++|.|++|+|-+|+.
T Consensus 265 QgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t 316 (506)
T KOG1335|consen 265 QGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFT 316 (506)
T ss_pred cCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccc
Confidence 9999999999999987654 33 332 22 579999999999999875
No 372
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.41 E-value=0.0017 Score=65.57 Aligned_cols=100 Identities=26% Similarity=0.306 Sum_probs=71.5
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc-c-------------------------------------c--
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-R-------------------------------------L-- 201 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~-------------------------------------~-- 201 (479)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+.... + .
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~ 86 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRL 86 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCC
Confidence 34799999999999999999999999999998632100 0 0
Q ss_pred -------C---------------CHHHHHHHHHHHHhC-CcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEec
Q 011700 202 -------F---------------TPKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI 258 (479)
Q Consensus 202 -------~---------------~~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~ 258 (479)
+ ...+.+.+.+.+.+. ++. +.++++.+++.+++ .+ .+.+++|+++.+|.||.|.
T Consensus 87 ~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~-~~-~v~~~~g~~~~a~~vI~Ad 163 (388)
T PRK07494 87 IRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPRED-EV-TVTLADGTTLSARLVVGAD 163 (388)
T ss_pred CCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCC-eE-EEEECCCCEEEEeEEEEec
Confidence 0 012233444555554 465 77899999986333 33 4778888899999999999
Q ss_pred CCCCCh
Q 011700 259 GIRPNT 264 (479)
Q Consensus 259 G~~p~~ 264 (479)
|.....
T Consensus 164 G~~S~v 169 (388)
T PRK07494 164 GRNSPV 169 (388)
T ss_pred CCCchh
Confidence 987643
No 373
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.40 E-value=0.0091 Score=57.29 Aligned_cols=57 Identities=16% Similarity=0.116 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC
Q 011700 202 FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI 260 (479)
Q Consensus 202 ~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~ 260 (479)
......+.+++.-..-+-++.+++.|..+....+|++ +...||++-.+|.||+|+-.
T Consensus 215 V~ggS~~yvq~laa~~~~~i~t~~~V~~l~rlPdGv~--l~~~~G~s~rFD~vViAth~ 271 (447)
T COG2907 215 VAGGSRAYVQRLAADIRGRIETRTPVCRLRRLPDGVV--LVNADGESRRFDAVVIATHP 271 (447)
T ss_pred cccchHHHHHHHhccccceeecCCceeeeeeCCCceE--EecCCCCccccceeeeecCh
Confidence 3333444555444443445889999999987677743 55567988899999999754
No 374
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.40 E-value=0.0017 Score=65.81 Aligned_cols=101 Identities=18% Similarity=0.278 Sum_probs=75.3
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc------------------ccc-----------------------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM------------------ARL----------------------- 201 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l------------------~~~----------------------- 201 (479)
-.|+|||+|+.|.-+|..|++.|.+|.++++.+.+- +..
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~ 83 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIE 83 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEe
Confidence 369999999999999999999999999999863211 000
Q ss_pred --------C-CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700 202 --------F-TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 264 (479)
Q Consensus 202 --------~-~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~ 264 (479)
+ -..+-+.+.+..++.|++++.++.+..+..++++.+..+ ..++.++.++.||.|.|.....
T Consensus 84 ~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~a~~vI~AdG~~s~l 154 (396)
T COG0644 84 VPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGV-RAGDDEVRAKVVIDADGVNSAL 154 (396)
T ss_pred cCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEE-EcCCEEEEcCEEEECCCcchHH
Confidence 0 012344566677789999999999999998555555433 3444789999999999976543
No 375
>PRK06185 hypothetical protein; Provisional
Probab=97.39 E-value=0.0021 Score=65.47 Aligned_cols=101 Identities=22% Similarity=0.328 Sum_probs=71.5
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc----------------------c-------------------
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA----------------------R------------------- 200 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~----------------------~------------------- 200 (479)
...|+|||+|++|+-+|..|++.|.+|+++++.+.... .
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~ 85 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR 85 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence 35799999999999999999999999999997632100 0
Q ss_pred -----cC--------------CHHHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEEEE--eCCCc-EEeccEEEEe
Q 011700 201 -----LF--------------TPKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVN--LRDGN-RLPTDMVVVG 257 (479)
Q Consensus 201 -----~~--------------~~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~v~--~~~g~-~i~~D~Vi~a 257 (479)
.+ ...+.+.+.+.+++ .|++++.++++.+++.+ ++.+..+. ..+|+ ++.+|.||.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g~~~i~a~~vI~A 164 (407)
T PRK06185 86 TVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDGPGEIRADLVVGA 164 (407)
T ss_pred EEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCCcEEEEeCEEEEC
Confidence 00 01223344444444 48999999999999873 45544343 44664 7999999999
Q ss_pred cCCCCC
Q 011700 258 IGIRPN 263 (479)
Q Consensus 258 ~G~~p~ 263 (479)
.|....
T Consensus 165 dG~~S~ 170 (407)
T PRK06185 165 DGRHSR 170 (407)
T ss_pred CCCchH
Confidence 998754
No 376
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.39 E-value=0.0017 Score=68.07 Aligned_cols=98 Identities=15% Similarity=0.264 Sum_probs=70.8
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc------------------cc-------------------------
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM------------------AR------------------------- 200 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l------------------~~------------------------- 200 (479)
.++|||+|+.|+++|..+++.|.+|.++++..... .+
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s 81 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS 81 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence 48999999999999999999999999998652110 00
Q ss_pred ----------cCCH-HHHHHHHHHHHhC-CcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700 201 ----------LFTP-KIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 262 (479)
Q Consensus 201 ----------~~~~-~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p 262 (479)
.+|+ .+...+.+.+++. +++++.+ .+.++..++++.+..|.+.+|..+.||.||+|+|.-.
T Consensus 82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 0011 1123445556655 7888765 5666655336778889999999999999999999764
No 377
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.39 E-value=0.0021 Score=65.10 Aligned_cols=100 Identities=20% Similarity=0.295 Sum_probs=71.3
Q ss_pred CCEEEECCChHHHHHHHHHhhC---CCeEEEEeecC-c-------------ccc---------cc---------------
Q 011700 163 GNAVVIGGGYIGMECAASLVIN---KINVTMVFPEA-H-------------CMA---------RL--------------- 201 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~---g~~Vtlv~~~~-~-------------~l~---------~~--------------- 201 (479)
-+|+|||+|+.|+-+|..|++. |.+|+++++.. . +.+ ..
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~ 83 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH 83 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence 4799999999999999999998 99999999831 1 000 00
Q ss_pred -----------CC---------------HHHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEE
Q 011700 202 -----------FT---------------PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 254 (479)
Q Consensus 202 -----------~~---------------~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~V 254 (479)
+. .++.+.+.+.+.+ .|++++.++++++++.. ++.+ .+.+.++.++.+|.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~-~~~~-~v~~~~g~~~~a~~v 161 (395)
T PRK05732 84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERT-QGSV-RVTLDDGETLTGRLL 161 (395)
T ss_pred EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEc-CCeE-EEEECCCCEEEeCEE
Confidence 00 0112233444444 47999999999999763 3333 477788888999999
Q ss_pred EEecCCCCCh
Q 011700 255 VVGIGIRPNT 264 (479)
Q Consensus 255 i~a~G~~p~~ 264 (479)
|.|.|.....
T Consensus 162 I~AdG~~S~v 171 (395)
T PRK05732 162 VAADGSHSAL 171 (395)
T ss_pred EEecCCChhh
Confidence 9999987653
No 378
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.39 E-value=0.0002 Score=71.80 Aligned_cols=34 Identities=35% Similarity=0.572 Sum_probs=31.3
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
.||+|||||++|+.||..|+++|++ |+|+|+.+.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~---V~LiE~rp~ 36 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVP---VELYEMRPV 36 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCc---EEEEEccCc
Confidence 6999999999999999999999988 999997654
No 379
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.38 E-value=0.0017 Score=73.40 Aligned_cols=102 Identities=18% Similarity=0.184 Sum_probs=70.5
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccccc----------CCHHHHHHHHHHHHhC-CcEEEcCCceEEE
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL----------FTPKIASYYEEYYKSK-GVKFVKGTVLSSF 230 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~----------~~~~~~~~~~~~l~~~-GV~i~~~~~v~~i 230 (479)
..+|+|||+|+.|+..|..+++.|.+|++++..+.+-... -..++.+.+.+.+++. +|+++.++.|..+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i 242 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY 242 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence 4689999999999999999999999999999875532211 1123434455666656 5999999988887
Q ss_pred EEcCCCcEEEEE-eC-------CC------cEEeccEEEEecCCCCChh
Q 011700 231 DVDSNGKVVAVN-LR-------DG------NRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 231 ~~~~~g~v~~v~-~~-------~g------~~i~~D~Vi~a~G~~p~~~ 265 (479)
.. ++.+..+. .. ++ .++.+|.||+|||..|...
T Consensus 243 ~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~ 289 (985)
T TIGR01372 243 YD--HNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPL 289 (985)
T ss_pred ec--CCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCC
Confidence 43 22221111 00 11 1689999999999887543
No 380
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.37 E-value=0.00058 Score=70.13 Aligned_cols=30 Identities=30% Similarity=0.616 Sum_probs=27.7
Q ss_pred EECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 9 IVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 9 IIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
|||+|.||++||.++++.|.+ |+|+||.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~---V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGAS---VLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCc---EEEEeCCCC
Confidence 799999999999999999987 999999874
No 381
>PRK09897 hypothetical protein; Provisional
Probab=97.35 E-value=0.0029 Score=66.14 Aligned_cols=99 Identities=11% Similarity=0.171 Sum_probs=65.7
Q ss_pred CCEEEECCChHHHHHHHHHhhCC--CeEEEEeecCccccc----------------------------------------
Q 011700 163 GNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCMAR---------------------------------------- 200 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l~~---------------------------------------- 200 (479)
++|+|||+|+.|+-++..|.+.+ .+|++++++..+-..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 47999999999999999998764 479999985321100
Q ss_pred --------------c-----CCHHHHHH---HHHHHHhCC--cEEEcCCceEEEEEcCCCcEEEEEeCC-CcEEeccEEE
Q 011700 201 --------------L-----FTPKIASY---YEEYYKSKG--VKFVKGTVLSSFDVDSNGKVVAVNLRD-GNRLPTDMVV 255 (479)
Q Consensus 201 --------------~-----~~~~~~~~---~~~~l~~~G--V~i~~~~~v~~i~~~~~g~v~~v~~~~-g~~i~~D~Vi 255 (479)
+ +...+.+. +.+.+.+.| ++++.+++|+.++..+++ ..+.+.+ +..+.+|.||
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g--~~V~t~~gg~~i~aD~VV 159 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAG--VMLATNQDLPSETFDLAV 159 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCE--EEEEECCCCeEEEcCEEE
Confidence 0 01111111 222334455 788889899999874333 3466655 4689999999
Q ss_pred EecCCCCC
Q 011700 256 VGIGIRPN 263 (479)
Q Consensus 256 ~a~G~~p~ 263 (479)
+|+|..++
T Consensus 160 LAtGh~~p 167 (534)
T PRK09897 160 IATGHVWP 167 (534)
T ss_pred ECCCCCCC
Confidence 99997543
No 382
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.35 E-value=0.00021 Score=75.64 Aligned_cols=37 Identities=27% Similarity=0.393 Sum_probs=34.5
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
|..++||||||+|.|||+||+++++.|.+ |+|||+.+
T Consensus 1 ~~~~~DVvVVG~G~AGl~AAl~Aa~~G~~---VivlEK~~ 37 (549)
T PRK12834 1 MAMDADVIVVGAGLAGLVAAAELADAGKR---VLLLDQEN 37 (549)
T ss_pred CCccCCEEEECcCHHHHHHHHHHHHCCCe---EEEEeCCC
Confidence 67789999999999999999999999987 89999987
No 383
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.34 E-value=0.0024 Score=64.85 Aligned_cols=100 Identities=15% Similarity=0.265 Sum_probs=70.4
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc------------------------------------------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------------ 200 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------ 200 (479)
++|+|||+|+.|+-+|..|++.|.+|+++++.+.+...
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 78999999999999999999999999999976321000
Q ss_pred -cC-------------------C-HHHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEEEEe---CCCcEEeccEEE
Q 011700 201 -LF-------------------T-PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGNRLPTDMVV 255 (479)
Q Consensus 201 -~~-------------------~-~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~v~~---~~g~~i~~D~Vi 255 (479)
.+ . .++.+.+.+.+.+ .++++++++++++++.++++ + .+.+ .+++++.+|+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~-v-~v~~~~~~~~~~~~adlvI 160 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS-I-TATIIRTNSVETVSAAYLI 160 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc-e-EEEEEeCCCCcEEecCEEE
Confidence 00 0 1222334444443 47999999999999864333 2 3443 334679999999
Q ss_pred EecCCCCCh
Q 011700 256 VGIGIRPNT 264 (479)
Q Consensus 256 ~a~G~~p~~ 264 (479)
-|-|.....
T Consensus 161 gADG~~S~v 169 (400)
T PRK06475 161 ACDGVWSML 169 (400)
T ss_pred ECCCccHhH
Confidence 999987654
No 384
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.33 E-value=0.00052 Score=74.22 Aligned_cols=94 Identities=19% Similarity=0.272 Sum_probs=72.3
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc--------cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEE
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 232 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~--------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~ 232 (479)
.+++|.|||+|+.|+-+|..|.+.|..|++.+|++++-.- -+|..+.++-.+.|.+.||+|+++++|-+-
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~-- 1861 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH-- 1861 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc--
Confidence 4789999999999999999999999999999999885321 146777777788899999999999865331
Q ss_pred cCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700 233 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 233 ~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~ 265 (479)
+. -|+-.-+.|.|++|+|..-..+
T Consensus 1862 --------vs-~d~l~~~~daiv~a~gst~prd 1885 (2142)
T KOG0399|consen 1862 --------VS-LDELKKENDAIVLATGSTTPRD 1885 (2142)
T ss_pred --------cc-HHHHhhccCeEEEEeCCCCCcC
Confidence 11 1222345699999999654433
No 385
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.33 E-value=0.0011 Score=65.45 Aligned_cols=55 Identities=24% Similarity=0.318 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecC
Q 011700 204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 259 (479)
Q Consensus 204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G 259 (479)
-.++..+.+.+++.|-++.++..|++|.- ++|++..|.+.||+++....|+.-++
T Consensus 264 Gavs~aia~~~~~~GaeI~tka~Vq~Ill-d~gka~GV~L~dG~ev~sk~VvSNAt 318 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAGAEIFTKATVQSILL-DSGKAVGVRLADGTEVRSKIVVSNAT 318 (561)
T ss_pred hHHHHHHHHHHHhccceeeehhhhhheec-cCCeEEEEEecCCcEEEeeeeecCCc
Confidence 46778888999999999999999999998 45999999999999999977776554
No 386
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.31 E-value=0.00039 Score=68.87 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=31.1
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
.+|||||||||.||..||..++|.|.+ .+|+..+-.
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~---TlLlT~~ld 62 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGAR---TLLLTHNLD 62 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCc---eEEeecccc
Confidence 368999999999999999999999987 577776644
No 387
>PRK13984 putative oxidoreductase; Provisional
Probab=97.31 E-value=0.00058 Score=73.28 Aligned_cols=91 Identities=18% Similarity=0.194 Sum_probs=67.0
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc-------cc-cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEE
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 232 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~ 232 (479)
.+++++|||+|+.|+.+|..|.+.|.+|+++++.+.+- +. .++.++.+...+.+++.|++++.++.+..
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~--- 358 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGK--- 358 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCC---
Confidence 46789999999999999999999999999998876531 11 13455555556778889999999976532
Q ss_pred cCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700 233 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 262 (479)
Q Consensus 233 ~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p 262 (479)
+ +...+ ....+|.||+|+|..+
T Consensus 359 --~-----~~~~~-~~~~yD~vilAtGa~~ 380 (604)
T PRK13984 359 --D-----IPLEE-LREKHDAVFLSTGFTL 380 (604)
T ss_pred --c-----CCHHH-HHhcCCEEEEEcCcCC
Confidence 1 11111 1357999999999764
No 388
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.30 E-value=0.00065 Score=68.56 Aligned_cols=34 Identities=29% Similarity=0.309 Sum_probs=31.5
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 197 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 197 (479)
+|+|||+|..|+|+|..|++.|.+|+++++.+..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 6899999999999999999999999999987664
No 389
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.29 E-value=0.0015 Score=66.68 Aligned_cols=99 Identities=17% Similarity=0.216 Sum_probs=68.3
Q ss_pred CEEEECCChHHHHHHHHHhhCC-CeEEEEeecCcccccc-----------------CCHHH-------------------
Q 011700 164 NAVVIGGGYIGMECAASLVINK-INVTMVFPEAHCMARL-----------------FTPKI------------------- 206 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g-~~Vtlv~~~~~~l~~~-----------------~~~~~------------------- 206 (479)
+|+|||+|+.|+-+|..|++.| .+|+++++.+.+.... +.+.+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6999999999999999999998 5999999875421100 00000
Q ss_pred ----------------------HHHHHHHHHh--CCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700 207 ----------------------ASYYEEYYKS--KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 262 (479)
Q Consensus 207 ----------------------~~~~~~~l~~--~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p 262 (479)
...+.+.|.+ ..+.++.++++++++.++++ ..+.+.+|+++++|.||.|.|...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEE--VQVLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCc--EEEEEcCCCEEEeeEEEECCCccH
Confidence 0111222211 14567889999999874333 357888999999999999999776
Q ss_pred Ch
Q 011700 263 NT 264 (479)
Q Consensus 263 ~~ 264 (479)
..
T Consensus 160 ~v 161 (414)
T TIGR03219 160 AL 161 (414)
T ss_pred HH
Confidence 43
No 390
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.28 E-value=0.00021 Score=73.26 Aligned_cols=95 Identities=19% Similarity=0.314 Sum_probs=26.5
Q ss_pred EEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc--------------------------------------------
Q 011700 165 AVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-------------------------------------------- 200 (479)
Q Consensus 165 vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------------------- 200 (479)
|+|||||+.|+-.|..+++.|.+|.|+++.+.+-..
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~~ 81 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYGW 81 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST--------------
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccccccc
Confidence 799999999999999999999999999988432100
Q ss_pred ----cCCHHH-HHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC---CcEEeccEEEEecCC
Q 011700 201 ----LFTPKI-ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---GNRLPTDMVVVGIGI 260 (479)
Q Consensus 201 ----~~~~~~-~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~---g~~i~~D~Vi~a~G~ 260 (479)
.++++. ...+.+.+++.||++++++.+.++.. +++++..|.+.+ ..++.++.+|=|+|.
T Consensus 82 ~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~-~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 82 VSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIR-DGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp --------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 122222 22345566778999999999999987 566788888865 457999999999994
No 391
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.28 E-value=0.004 Score=65.27 Aligned_cols=106 Identities=15% Similarity=0.198 Sum_probs=77.4
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc--------------------------------------cCC-
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------------------------------------LFT- 203 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------------~~~- 203 (479)
-.|+|||+|..|+-.|..+++.|.+|.++++.+.+-.. ..+
T Consensus 62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~d~ 141 (506)
T PRK06481 62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTNDK 141 (506)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 46999999999999999999999999999876421100 000
Q ss_pred ------------------------------------------------HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCC
Q 011700 204 ------------------------------------------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSN 235 (479)
Q Consensus 204 ------------------------------------------------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~ 235 (479)
..+.+.+.+.+++.|+++++++.++++.. ++
T Consensus 142 ~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~-~~ 220 (506)
T PRK06481 142 ALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITE-KD 220 (506)
T ss_pred HHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEe-cC
Confidence 12334455566778999999999999986 46
Q ss_pred CcEEEEEe--CCC--cEEeccEEEEecC-CCCChhhhhc
Q 011700 236 GKVVAVNL--RDG--NRLPTDMVVVGIG-IRPNTSLFEG 269 (479)
Q Consensus 236 g~v~~v~~--~~g--~~i~~D~Vi~a~G-~~p~~~l~~~ 269 (479)
+++..+.. .++ .++.++.||+|+| +.+|.++++.
T Consensus 221 g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~~~ 259 (506)
T PRK06481 221 GKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMIAK 259 (506)
T ss_pred CEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHHHH
Confidence 77766655 343 3688999999997 7888776653
No 392
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.28 E-value=0.00029 Score=72.76 Aligned_cols=34 Identities=24% Similarity=0.425 Sum_probs=30.6
Q ss_pred CeEEEECCchHHHHHHHHHHHcC--CCCCcEEEEcCCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRG--VPPGELCIISEEPV 41 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g--~~~~~V~lie~~~~ 41 (479)
++|+|||||+|||+||..|++.| ++ |+|+|+++.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~---V~vlEa~~~ 36 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDAD---ITLLEASDR 36 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCC---EEEEEcCCC
Confidence 37999999999999999999987 55 999999975
No 393
>PLN02568 polyamine oxidase
Probab=97.28 E-value=0.00031 Score=73.76 Aligned_cols=41 Identities=22% Similarity=0.203 Sum_probs=34.0
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCC--CCCcEEEEcCCCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGV--PPGELCIISEEPV 41 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~--~~~~V~lie~~~~ 41 (479)
|++.+||+|||||++||+||..|.+.|. +..+|+|+|+...
T Consensus 2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~ 44 (539)
T PLN02568 2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDR 44 (539)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCC
Confidence 5567899999999999999999999872 1134999999875
No 394
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.27 E-value=0.0015 Score=65.43 Aligned_cols=95 Identities=18% Similarity=0.300 Sum_probs=64.1
Q ss_pred CEEEECCChHHHHHHHHHhhC--CCeEEEEeecCccccc--------cCCHHHHH-------------------------
Q 011700 164 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMAR--------LFTPKIAS------------------------- 208 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~l~~--------~~~~~~~~------------------------- 208 (479)
.++|||+|..|+.+|..|.+. |.+|.++++.+.+.+. .+++...+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 379999999999999999987 9999999987633221 11111111
Q ss_pred ---------HHHHH-HHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700 209 ---------YYEEY-YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 264 (479)
Q Consensus 209 ---------~~~~~-l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~ 264 (479)
.+.+. +++.+..++.+.+|.+++. ++ +.+.+|+++.+|.||.|.|.++..
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~--~~----v~l~dg~~~~A~~VI~A~G~~s~~ 140 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDA--DG----VDLAPGTRINARSVIDCRGFKPSA 140 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeC--CE----EEECCCCEEEeeEEEECCCCCCCc
Confidence 11111 2222334667888888843 32 455789999999999999987643
No 395
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.25 E-value=0.0036 Score=64.39 Aligned_cols=102 Identities=25% Similarity=0.347 Sum_probs=73.6
Q ss_pred CEEEECCChHHHHHHHHHhh----CCCeEEEEeecC--ccc------------cc-------------------------
Q 011700 164 NAVVIGGGYIGMECAASLVI----NKINVTMVFPEA--HCM------------AR------------------------- 200 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~----~g~~Vtlv~~~~--~~l------------~~------------------------- 200 (479)
.|+|||+|+.|+-+|..|++ .|.+|+++++.+ ... ++
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~~ 81 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSDR 81 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhhc
Confidence 48999999999999999998 799999999832 110 00
Q ss_pred ------------------cCC--------------HHHHHHHHHHHHhCC---cEEEcCCceEEEEEc-----CCCcEEE
Q 011700 201 ------------------LFT--------------PKIASYYEEYYKSKG---VKFVKGTVLSSFDVD-----SNGKVVA 240 (479)
Q Consensus 201 ------------------~~~--------------~~~~~~~~~~l~~~G---V~i~~~~~v~~i~~~-----~~g~v~~ 240 (479)
.++ ..+.+.+.+.+++.+ ++++.++++.+++.. +++....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~ 161 (437)
T TIGR01989 82 IQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVH 161 (437)
T ss_pred CCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceE
Confidence 000 123334455555554 999999999999742 1233346
Q ss_pred EEeCCCcEEeccEEEEecCCCCChh
Q 011700 241 VNLRDGNRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 241 v~~~~g~~i~~D~Vi~a~G~~p~~~ 265 (479)
+.+.+|+++.+|+||-|-|......
T Consensus 162 v~~~~g~~i~a~llVgADG~~S~vR 186 (437)
T TIGR01989 162 ITLSDGQVLYTKLLIGADGSNSNVR 186 (437)
T ss_pred EEEcCCCEEEeeEEEEecCCCChhH
Confidence 7888999999999999999887654
No 396
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.25 E-value=0.0035 Score=63.53 Aligned_cols=102 Identities=15% Similarity=0.138 Sum_probs=72.1
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc--cc----------------------------------------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--AR---------------------------------------- 200 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l--~~---------------------------------------- 200 (479)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+... ..
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~ 82 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR 82 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence 479999999999999999999999999999775310 00
Q ss_pred ----cC-------------CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe-CCCc--EEeccEEEEecCC
Q 011700 201 ----LF-------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-RDGN--RLPTDMVVVGIGI 260 (479)
Q Consensus 201 ----~~-------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~-~~g~--~i~~D~Vi~a~G~ 260 (479)
.+ -+++.+.+.+...+.|+++++++++++++.. ++....|.+ .+|+ ++.+|+||-|-|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~-~~~~~~V~~~~~G~~~~i~ad~vVgADG~ 161 (392)
T PRK08243 83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDF-DSDRPYVTYEKDGEEHRLDCDFIAGCDGF 161 (392)
T ss_pred EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEec-CCCceEEEEEcCCeEEEEEeCEEEECCCC
Confidence 00 0122333444456679999999999998751 222234555 4664 6899999999998
Q ss_pred CCChh
Q 011700 261 RPNTS 265 (479)
Q Consensus 261 ~p~~~ 265 (479)
...+.
T Consensus 162 ~S~vR 166 (392)
T PRK08243 162 HGVSR 166 (392)
T ss_pred CCchh
Confidence 77653
No 397
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.24 E-value=0.00075 Score=71.73 Aligned_cols=91 Identities=21% Similarity=0.192 Sum_probs=65.4
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc--------ccCCHHHHHHHHHHHHhCCcEEEcCCce-EEEE
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA--------RLFTPKIASYYEEYYKSKGVKFVKGTVL-SSFD 231 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--------~~~~~~~~~~~~~~l~~~GV~i~~~~~v-~~i~ 231 (479)
.+++|+|||+|++|+.+|..|++.|.+|+++++.+.+.. ..++.+..+.-.+.+++.|++++.++.+ ..+.
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~ 215 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDIT 215 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCC
Confidence 578999999999999999999999999999997765321 1134455555556677899999988754 2221
Q ss_pred EcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700 232 VDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 263 (479)
Q Consensus 232 ~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~ 263 (479)
. + .....+|.|++|+|..+.
T Consensus 216 ~--~----------~~~~~~D~Vi~AtG~~~~ 235 (564)
T PRK12771 216 L--E----------QLEGEFDAVFVAIGAQLG 235 (564)
T ss_pred H--H----------HHHhhCCEEEEeeCCCCC
Confidence 1 0 011247999999998754
No 398
>PRK06126 hypothetical protein; Provisional
Probab=97.23 E-value=0.0036 Score=66.32 Aligned_cols=101 Identities=21% Similarity=0.323 Sum_probs=70.3
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc-----------------------------------------
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------------- 200 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------- 200 (479)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+.....
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~ 86 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR 86 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence 468999999999999999999999999999976311000
Q ss_pred -------------c----------------------CC-HHHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEEEEe
Q 011700 201 -------------L----------------------FT-PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNL 243 (479)
Q Consensus 201 -------------~----------------------~~-~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~v~~ 243 (479)
. .+ ..+.+.+.+.+++ .++++++++++++++.++++ +. +.+
T Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~-v~-v~~ 164 (545)
T PRK06126 87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADG-VT-ATV 164 (545)
T ss_pred CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCe-EE-EEE
Confidence 0 00 0122233444443 48999999999999874443 32 333
Q ss_pred ---CCCc--EEeccEEEEecCCCCCh
Q 011700 244 ---RDGN--RLPTDMVVVGIGIRPNT 264 (479)
Q Consensus 244 ---~~g~--~i~~D~Vi~a~G~~p~~ 264 (479)
.+|+ ++.+|.||.|.|.....
T Consensus 165 ~~~~~g~~~~i~ad~vVgADG~~S~V 190 (545)
T PRK06126 165 EDLDGGESLTIRADYLVGCDGARSAV 190 (545)
T ss_pred EECCCCcEEEEEEEEEEecCCcchHH
Confidence 3453 68999999999987654
No 399
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.22 E-value=0.0048 Score=63.55 Aligned_cols=63 Identities=19% Similarity=0.260 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC--CCc--EEeccEEEEecC-CCCChhhhh
Q 011700 206 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--DGN--RLPTDMVVVGIG-IRPNTSLFE 268 (479)
Q Consensus 206 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~--~g~--~i~~D~Vi~a~G-~~p~~~l~~ 268 (479)
+.+.+.+.+++.|+++++++.++++..++++++..+... +++ .+.++.||+|+| ...|.++.+
T Consensus 132 l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~~ 199 (439)
T TIGR01813 132 IVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMIA 199 (439)
T ss_pred HHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHHH
Confidence 334455566778999999999999987556677666553 343 478999999999 556666554
No 400
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.22 E-value=0.0018 Score=67.45 Aligned_cols=79 Identities=16% Similarity=0.162 Sum_probs=58.4
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||+|.+|+++|..|+++|.+ |+++|..+... .....+.+++
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~---V~~~d~~~~~~------------------------------~~~~~~~l~~ 62 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGAR---VTVVDDGDDER------------------------------HRALAAILEA 62 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCchhh------------------------------hHHHHHHHHH
Confidence 45899999999999999999998986 89998763100 0122345677
Q ss_pred cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCccccc
Q 011700 84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLE 129 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~ 129 (479)
.|++++.+..+. ....+|.+|+++|..|..|.
T Consensus 63 ~gv~~~~~~~~~--------------~~~~~D~Vv~s~Gi~~~~~~ 94 (480)
T PRK01438 63 LGATVRLGPGPT--------------LPEDTDLVVTSPGWRPDAPL 94 (480)
T ss_pred cCCEEEECCCcc--------------ccCCCCEEEECCCcCCCCHH
Confidence 899998875332 12458999999999887764
No 401
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.21 E-value=0.00039 Score=69.37 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=31.0
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
+|++|||||++|+++|..|++.|.+ |+|+|+.+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~---V~viEk~~~ 35 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKR---VLVVEKRNH 35 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCC
Confidence 7999999999999999999988876 999999754
No 402
>PTZ00367 squalene epoxidase; Provisional
Probab=97.19 E-value=0.00038 Score=73.41 Aligned_cols=34 Identities=24% Similarity=0.453 Sum_probs=31.8
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
++||+|||||++|+++|..|++.|++ |+|+|+.+
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G~~---V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQGRK---VLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcCCE---EEEEcccc
Confidence 57999999999999999999999987 99999975
No 403
>PRK06996 hypothetical protein; Provisional
Probab=97.17 E-value=0.0043 Score=62.99 Aligned_cols=98 Identities=14% Similarity=0.232 Sum_probs=72.5
Q ss_pred CCCEEEECCChHHHHHHHHHhhCC----CeEEEEeecCcc------------------cc--------------------
Q 011700 162 GGNAVVIGGGYIGMECAASLVINK----INVTMVFPEAHC------------------MA-------------------- 199 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g----~~Vtlv~~~~~~------------------l~-------------------- 199 (479)
...|+|||+|+.|+-+|..|++.| .+|+++++.+.. +.
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~ 90 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQR 90 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecC
Confidence 357999999999999999999886 479999875210 00
Q ss_pred cc-------------------C-CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC---cEEeccEEEE
Q 011700 200 RL-------------------F-TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG---NRLPTDMVVV 256 (479)
Q Consensus 200 ~~-------------------~-~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g---~~i~~D~Vi~ 256 (479)
.. . -..+.+.+.+.+++.|++++.++++++++.+.++ ..+.+.++ +++.+|+||-
T Consensus 91 ~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~--v~v~~~~~~g~~~i~a~lvIg 168 (398)
T PRK06996 91 GHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADG--VTLALGTPQGARTLRARIAVQ 168 (398)
T ss_pred CCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe--EEEEECCCCcceEEeeeEEEE
Confidence 00 0 1345566777788889999999999999764444 34666654 5899999999
Q ss_pred ecCCC
Q 011700 257 GIGIR 261 (479)
Q Consensus 257 a~G~~ 261 (479)
|-|..
T Consensus 169 ADG~~ 173 (398)
T PRK06996 169 AEGGL 173 (398)
T ss_pred CCCCC
Confidence 99964
No 404
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.16 E-value=0.00044 Score=73.63 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=32.2
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
++.+|+|||||++|+++|..|++.|++ |+|+|+.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~---V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFD---VLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCe---EEEEeccc
Confidence 358999999999999999999999987 99999975
No 405
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.15 E-value=0.00048 Score=72.02 Aligned_cols=58 Identities=17% Similarity=0.235 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC-----cEEeccEEEEecCCC
Q 011700 203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-----NRLPTDMVVVGIGIR 261 (479)
Q Consensus 203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g-----~~i~~D~Vi~a~G~~ 261 (479)
...+.+.+.+.++++|++|++++.|++|.. +++++..+.+.++ +++.+|.||+++...
T Consensus 231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHT-KGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHHHhcCCEEeCCceEEEEEE-eCCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 466888899999999999999999999987 3455445655554 578999999998753
No 406
>PLN02576 protoporphyrinogen oxidase
Probab=97.13 E-value=0.00051 Score=71.88 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=32.2
Q ss_pred cCeEEEECCchHHHHHHHHHHHc-CCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKR-GVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~-g~~~~~V~lie~~~~ 41 (479)
++||+|||||++||+||.+|.+. |.+ |+|+|+++.
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~g~~---v~vlEa~~r 47 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKHGVN---VLVTEARDR 47 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhcCCC---EEEEecCCC
Confidence 57999999999999999999998 776 999999975
No 407
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.11 E-value=0.0013 Score=67.88 Aligned_cols=73 Identities=15% Similarity=0.219 Sum_probs=56.6
Q ss_pred CCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700 185 KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 262 (479)
Q Consensus 185 g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p 262 (479)
+..-.+..+.+-.+. +..+.+.+....++.|..++.++.|+++.. ++++...|++..| .+++..++-|+|+-.
T Consensus 171 ~v~g~Ly~P~DG~~D---P~~lC~ala~~A~~~GA~viE~cpV~~i~~-~~~~~~gVeT~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 171 DVYGGLYSPGDGVMD---PAGLCQALARAASALGALVIENCPVTGLHV-ETDKFGGVETPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred HheeeeecCCCcccC---HHHHHHHHHHHHHhcCcEEEecCCcceEEe-ecCCccceeccCc-ceecceEEechhHHH
Confidence 455677777776543 345577788888999999999999999987 4455557888777 689999999999755
No 408
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0037 Score=56.12 Aligned_cols=99 Identities=16% Similarity=0.216 Sum_probs=72.1
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEee--------------------cCccccccCCHHHHHHHHHHHHhCCcEE
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFP--------------------EAHCMARLFTPKIASYYEEYYKSKGVKF 221 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~--------------------~~~~l~~~~~~~~~~~~~~~l~~~GV~i 221 (479)
..+++|||+|+.+.-.|..+++...+-.+++- -|-+-.....+++.+.++++.++.|.++
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i 87 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI 87 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence 45899999999999999888876555444431 1222233346899999999999999999
Q ss_pred EcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700 222 VKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 264 (479)
Q Consensus 222 ~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~ 264 (479)
++.+ |+++.. .++...+. .|.+.+.+|.||+|||.....
T Consensus 88 ~tEt-Vskv~~--sskpF~l~-td~~~v~~~avI~atGAsAkR 126 (322)
T KOG0404|consen 88 ITET-VSKVDL--SSKPFKLW-TDARPVTADAVILATGASAKR 126 (322)
T ss_pred eeee-hhhccc--cCCCeEEE-ecCCceeeeeEEEecccceee
Confidence 9875 677765 34444443 466789999999999976644
No 409
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.10 E-value=0.0054 Score=61.67 Aligned_cols=96 Identities=20% Similarity=0.274 Sum_probs=69.5
Q ss_pred EEEECCChHHHHHHHHH--hhCCCeEEEEeecCcc--ccc----------------------------------------
Q 011700 165 AVVIGGGYIGMECAASL--VINKINVTMVFPEAHC--MAR---------------------------------------- 200 (479)
Q Consensus 165 vvVIGgG~~g~E~A~~l--~~~g~~Vtlv~~~~~~--l~~---------------------------------------- 200 (479)
++|||+|+.|+-+|..| .+.|.+|.++++.+.. -..
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~Y 81 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYPY 81 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccce
Confidence 79999999999999999 7789999999876433 100
Q ss_pred --cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700 201 --LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 263 (479)
Q Consensus 201 --~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~ 263 (479)
.-...+.+.+.+.+.+.++ +..+..|.+|+..++ ...+.+.+|+++.++.|+-|.|..+.
T Consensus 82 ~~i~~~~f~~~l~~~~~~~~~-~~~~~~V~~i~~~~~--~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 82 CMIDRADFYEFLLERAAAGGV-IRLNARVTSIEETGD--GVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred EEEEHHHHHHHHHHHhhhCCe-EEEccEEEEEEecCc--eEEEEECCCCEEEeeEEEECCCcccc
Confidence 0012344445555554454 566788999987433 34578899999999999999996554
No 410
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.10 E-value=0.00055 Score=71.57 Aligned_cols=58 Identities=21% Similarity=0.244 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700 204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 262 (479)
Q Consensus 204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p 262 (479)
..+.+.+.+.++++|++++.+++|++|.. +++++..|.+.+|+++++|.||+++|...
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~g~~~~ad~vV~a~~~~~ 286 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIIL-ENGKAVGVKLADGEKIYAKRIVSNATRWD 286 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEe-cCCcEEEEEeCCCCEEEcCEEEECCChHH
Confidence 56788889999999999999999999987 45777889999999999999999988643
No 411
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.09 E-value=0.00057 Score=70.85 Aligned_cols=34 Identities=29% Similarity=0.390 Sum_probs=31.3
Q ss_pred CeEEEECCchHHHHHHHHHHHc----CCCCCcEEEEcCCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKR----GVPPGELCIISEEPV 41 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~----g~~~~~V~lie~~~~ 41 (479)
+||+|||||++||+||..|.++ |++ |+|+|+++.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~---v~vlE~~~r 40 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVE---LTLVEASDR 40 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCc---EEEEEcCCc
Confidence 7999999999999999999998 666 999999975
No 412
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.09 E-value=0.0074 Score=60.60 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=35.3
Q ss_pred HHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700 214 YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 262 (479)
Q Consensus 214 l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p 262 (479)
+.+.|++++.++++++++.+ ++. ..+.+.+| ++.+|.||+|+|...
T Consensus 159 ~~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~g-~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 159 AREAGAELLFNEPVTAIEAD-GDG-VTVTTADG-TYEAKKLVVSAGAWV 204 (376)
T ss_pred HHHCCCEEECCCEEEEEEee-CCe-EEEEeCCC-EEEeeEEEEecCcch
Confidence 44568999999999999873 333 35677776 799999999999753
No 413
>PLN02268 probable polyamine oxidase
Probab=97.06 E-value=0.00061 Score=70.02 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=31.6
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA 42 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~ 42 (479)
.+|+|||||.+||+||+.|.+.|++ |+|+|+.+..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~---v~vlEa~~r~ 35 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFK---VTLLESRDRI 35 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCe---EEEEeCCCCC
Confidence 3799999999999999999998886 9999999763
No 414
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.06 E-value=0.0024 Score=60.40 Aligned_cols=75 Identities=23% Similarity=0.196 Sum_probs=53.4
Q ss_pred CCeEEEEeecCccccccCCHHHHHHHHHHHHhC------CcEEEcCCceEEEEEcCCCcEEEEEeCC--C--cEEeccEE
Q 011700 185 KINVTMVFPEAHCMARLFTPKIASYYEEYYKSK------GVKFVKGTVLSSFDVDSNGKVVAVNLRD--G--NRLPTDMV 254 (479)
Q Consensus 185 g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~------GV~i~~~~~v~~i~~~~~g~v~~v~~~~--g--~~i~~D~V 254 (479)
|..|---+|+.+.+|. .-++...+...+++. -+++.++++|..|.. ++|++..|+.-| | ..+.+|.|
T Consensus 122 GHSvpRTHr~s~plpp--gfei~~~L~~~l~k~as~~pe~~ki~~nskvv~il~-n~gkVsgVeymd~sgek~~~~~~~V 198 (477)
T KOG2404|consen 122 GHSVPRTHRSSGPLPP--GFEIVKALSTRLKKKASENPELVKILLNSKVVDILR-NNGKVSGVEYMDASGEKSKIIGDAV 198 (477)
T ss_pred CCCCCcccccCCCCCC--chHHHHHHHHHHHHhhhcChHHHhhhhcceeeeeec-CCCeEEEEEEEcCCCCccceecCce
Confidence 4555555688777776 345666665555442 378899999999996 788888888754 3 35788999
Q ss_pred EEecCCCC
Q 011700 255 VVGIGIRP 262 (479)
Q Consensus 255 i~a~G~~p 262 (479)
++|+|--.
T Consensus 199 VlatGGf~ 206 (477)
T KOG2404|consen 199 VLATGGFG 206 (477)
T ss_pred EEecCCcC
Confidence 99988443
No 415
>PRK07538 hypothetical protein; Provisional
Probab=97.06 E-value=0.0054 Score=62.59 Aligned_cols=99 Identities=19% Similarity=0.225 Sum_probs=67.8
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccccc-----------------CC-----------------------
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----------------FT----------------------- 203 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------~~----------------------- 203 (479)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.+.. +.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI 81 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence 58999999999999999999999999999874321000 00
Q ss_pred --------------------HHHHHHHHHHHHh-CC-cEEEcCCceEEEEEcCCCcEEEEEeCC-----CcEEeccEEEE
Q 011700 204 --------------------PKIASYYEEYYKS-KG-VKFVKGTVLSSFDVDSNGKVVAVNLRD-----GNRLPTDMVVV 256 (479)
Q Consensus 204 --------------------~~~~~~~~~~l~~-~G-V~i~~~~~v~~i~~~~~g~v~~v~~~~-----g~~i~~D~Vi~ 256 (479)
..+.+.+.+.+.+ .| ++++.++++++++.++++.+ +.+.+ ++++.+|+||-
T Consensus 82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~--~~~~~~~~g~~~~~~adlvIg 159 (413)
T PRK07538 82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV--VFLGDRAGGDLVSVRGDVLIG 159 (413)
T ss_pred eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE--EEEeccCCCccceEEeeEEEE
Confidence 0112223333333 35 56999999999987555533 33333 24899999999
Q ss_pred ecCCCCCh
Q 011700 257 GIGIRPNT 264 (479)
Q Consensus 257 a~G~~p~~ 264 (479)
|-|.....
T Consensus 160 ADG~~S~v 167 (413)
T PRK07538 160 ADGIHSAV 167 (413)
T ss_pred CCCCCHHH
Confidence 99976644
No 416
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.03 E-value=0.00051 Score=66.64 Aligned_cols=66 Identities=15% Similarity=0.310 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhCCcEEEcCCceEEEEEc-CCCcEEEEEeCC--Cc----EEeccEEEEecCCCCChhh-hhccc
Q 011700 206 IASYYEEYYKSKGVKFVKGTVLSSFDVD-SNGKVVAVNLRD--GN----RLPTDMVVVGIGIRPNTSL-FEGQL 271 (479)
Q Consensus 206 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~-~~g~v~~v~~~~--g~----~i~~D~Vi~a~G~~p~~~l-~~~~~ 271 (479)
....+...++..++++++++.|.+|..+ ++++++.|++.+ +. .+.++.||+|.|.--...| +.+++
T Consensus 195 ~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi 268 (296)
T PF00732_consen 195 ATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI 268 (296)
T ss_dssp HHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred hhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence 3455666666669999999999999552 466777777653 33 4678999999996544443 34443
No 417
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.03 E-value=0.0013 Score=72.06 Aligned_cols=34 Identities=26% Similarity=0.183 Sum_probs=32.1
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 194 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~ 194 (479)
.+++|+|||+|+.|+.+|..|++.|.+||++++.
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 5789999999999999999999999999999975
No 418
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.00072 Score=68.41 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=31.8
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
++|+|+|||.|||+||++|+++|++ |+|+|..+.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~---vt~~ea~~~ 34 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYD---VTLYEARDR 34 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCc---eEEEeccCc
Confidence 4899999999999999999999987 999999975
No 419
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.02 E-value=0.00077 Score=71.74 Aligned_cols=66 Identities=17% Similarity=0.284 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC-CCc--EEecc-EEEEecC-CCCChhhhh
Q 011700 203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DGN--RLPTD-MVVVGIG-IRPNTSLFE 268 (479)
Q Consensus 203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~-~g~--~i~~D-~Vi~a~G-~~p~~~l~~ 268 (479)
...+...+.+..++.|+++++++.++++..+++|+++.|... +++ .+.+. .||+|+| +..|.++++
T Consensus 212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~ 282 (584)
T PRK12835 212 GQSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRK 282 (584)
T ss_pred cHHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHH
Confidence 455666677788899999999999999988667888877653 343 46786 5888887 666666654
No 420
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=97.01 E-value=0.0072 Score=63.93 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=30.0
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPE 194 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~ 194 (479)
-.|+|||||.+|+-+|..|+++|.+|+++++.
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~ 38 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALRGLRCILVERH 38 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHcCCeEEEEECC
Confidence 46999999999999999999999999999976
No 421
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=96.99 E-value=0.0077 Score=60.97 Aligned_cols=101 Identities=17% Similarity=0.196 Sum_probs=69.4
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc--cc----c-----------------------------------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--AR----L----------------------------------- 201 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l--~~----~----------------------------------- 201 (479)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+... .. .
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDGQ 82 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCCE
Confidence 579999999999999999999999999999775310 00 0
Q ss_pred -----C------------C-HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC-CCc--EEeccEEEEecCC
Q 011700 202 -----F------------T-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DGN--RLPTDMVVVGIGI 260 (479)
Q Consensus 202 -----~------------~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~-~g~--~i~~D~Vi~a~G~ 260 (479)
+ . +.+...+.+.+.+.|+.++.+.++..+...++.. ..|.+. +|+ ++.+|+||-|-|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~-~~V~~~~~g~~~~i~adlvIGADG~ 161 (390)
T TIGR02360 83 RFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDR-PYVTFERDGERHRLDCDFIAGCDGF 161 (390)
T ss_pred EEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCc-cEEEEEECCeEEEEEeCEEEECCCC
Confidence 0 0 1222334455556788888887777765412222 245564 675 6899999999997
Q ss_pred CCCh
Q 011700 261 RPNT 264 (479)
Q Consensus 261 ~p~~ 264 (479)
....
T Consensus 162 ~S~V 165 (390)
T TIGR02360 162 HGVS 165 (390)
T ss_pred chhh
Confidence 7654
No 422
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=96.98 E-value=0.00083 Score=70.49 Aligned_cols=64 Identities=17% Similarity=0.281 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEEEEeC-CCc--EEecc-EEEEecC-CCCChhhhh
Q 011700 204 PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLR-DGN--RLPTD-MVVVGIG-IRPNTSLFE 268 (479)
Q Consensus 204 ~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~v~~~-~g~--~i~~D-~Vi~a~G-~~p~~~l~~ 268 (479)
..+...+.+.+.+ .|+++++++.++++.. +++++..|... +++ ++.++ .||+|+| +..|.++++
T Consensus 173 ~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~-~~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~~n~~m~~ 242 (513)
T PRK12837 173 RALIGRFLAALARFPNARLRLNTPLVELVV-EDGRVVGAVVERGGERRRVRARRGVLLAAGGFEQNDDMRA 242 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCEEEEEEe-cCCEEEEEEEEECCcEEEEEeCceEEEeCCCccCCHHHHH
Confidence 3444555555544 5999999999999876 46777777543 343 57786 6888887 445555443
No 423
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=96.97 E-value=0.00083 Score=69.66 Aligned_cols=51 Identities=18% Similarity=0.299 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecC
Q 011700 205 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 259 (479)
Q Consensus 205 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G 259 (479)
.+.+.+.+.+++ ++++++++|++|+..++ . ..|.+.+|+++.+|.||+++.
T Consensus 227 ~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~-~-~~v~~~~g~~~~ad~VI~a~p 277 (463)
T PRK12416 227 TIIDRLEEVLTE--TVVKKGAVTTAVSKQGD-R-YEISFANHESIQADYVVLAAP 277 (463)
T ss_pred HHHHHHHHhccc--ccEEcCCEEEEEEEcCC-E-EEEEECCCCEEEeCEEEECCC
Confidence 445555555543 57999999999997443 3 357777888899999999985
No 424
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.94 E-value=0.0091 Score=51.97 Aligned_cols=41 Identities=24% Similarity=0.381 Sum_probs=31.1
Q ss_pred CcEEE-cCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC
Q 011700 218 GVKFV-KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI 260 (479)
Q Consensus 218 GV~i~-~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~ 260 (479)
||++. ...+|..++..+++ ..+.+.+|..+.+|.|++|+|.
T Consensus 114 ~i~v~~~~~~V~~i~~~~~~--~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 114 GITVRHVRAEVVDIRRDDDG--YRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CcEEEEEeeEEEEEEEcCCc--EEEEECCCCEEEeCEEEECCCC
Confidence 54443 34578888885555 3678899999999999999995
No 425
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=96.94 E-value=0.0096 Score=60.81 Aligned_cols=58 Identities=19% Similarity=0.277 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC---CCc--EEeccEEEEecCCCCC
Q 011700 205 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DGN--RLPTDMVVVGIGIRPN 263 (479)
Q Consensus 205 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~---~g~--~i~~D~Vi~a~G~~p~ 263 (479)
.+.+.+.+.++++|++|+.++.++++.. +++++..+... +|+ ++.++.||+|+|--..
T Consensus 142 ~~~~~l~~~~~~~gv~i~~~~~~~~Li~-e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 142 ALIEALAKAAEEAGVDIRFNTRVTDLIT-EDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHTTEEEEESEEEEEEEE-ETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHhhcCeeeeccceeeeEEE-eCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 4566777888889999999999999988 57788888776 454 5789999999997655
No 426
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=96.90 E-value=0.011 Score=59.74 Aligned_cols=98 Identities=21% Similarity=0.381 Sum_probs=67.0
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeec-Ccc--------------c------------------cc----------
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPE-AHC--------------M------------------AR---------- 200 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~~--------------l------------------~~---------- 200 (479)
.|+|||+|+.|+-+|..|++.|.+|.++++. +.. + +.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS 81 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence 4899999999999999999999999999876 210 0 00
Q ss_pred ---c---CC-HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC------C--cEEeccEEEEecCCCCCh
Q 011700 201 ---L---FT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD------G--NRLPTDMVVVGIGIRPNT 264 (479)
Q Consensus 201 ---~---~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~------g--~~i~~D~Vi~a~G~~p~~ 264 (479)
. ++ ..+.+.+.+...+.|++++.+ .++++..++ +.+ .+.+.+ + .++.+|.||.|.|.....
T Consensus 82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~-~~~-~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v 157 (388)
T TIGR02023 82 EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDR-DGV-TLTYRTPKKGAGGEKGSVEADVVIGADGANSPV 157 (388)
T ss_pred CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcC-CeE-EEEEEeccccCCCcceEEEeCEEEECCCCCcHH
Confidence 0 01 122234555566779999765 588887633 333 344432 2 479999999999976543
No 427
>PRK11445 putative oxidoreductase; Provisional
Probab=96.89 E-value=0.015 Score=57.84 Aligned_cols=98 Identities=18% Similarity=0.275 Sum_probs=66.7
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc--------cccCCHH------------------------------
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--------ARLFTPK------------------------------ 205 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l--------~~~~~~~------------------------------ 205 (479)
.|+|||+|+.|+-+|..|++. .+|+++++.+... ...+.+.
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~ 81 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL 81 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence 589999999999999999998 9999999775210 0000000
Q ss_pred --------------H-HHHHHHH---HHhCCcEEEcCCceEEEEEcCCCcEEEEEe-CCCc--EEeccEEEEecCCCCCh
Q 011700 206 --------------I-ASYYEEY---YKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-RDGN--RLPTDMVVVGIGIRPNT 264 (479)
Q Consensus 206 --------------~-~~~~~~~---l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~-~~g~--~i~~D~Vi~a~G~~p~~ 264 (479)
+ +..+.+. ..+.|++++.++.+++++..+++ + .+.+ .+|+ ++.+|.||.|.|.....
T Consensus 82 ~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~-~-~v~~~~~g~~~~i~a~~vV~AdG~~S~v 159 (351)
T PRK11445 82 ANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDG-Y-HVIFRADGWEQHITARYLVGADGANSMV 159 (351)
T ss_pred cccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCE-E-EEEEecCCcEEEEEeCEEEECCCCCcHH
Confidence 0 1111122 23468999999999999874444 2 3443 4664 68999999999987654
No 428
>PRK02106 choline dehydrogenase; Validated
Probab=96.88 E-value=0.0011 Score=70.34 Aligned_cols=61 Identities=13% Similarity=0.212 Sum_probs=42.6
Q ss_pred HHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC----cEEeccEEEEecCCCCChhhh-hccc
Q 011700 210 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG----NRLPTDMVVVGIGIRPNTSLF-EGQL 271 (479)
Q Consensus 210 ~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g----~~i~~D~Vi~a~G~~p~~~l~-~~~~ 271 (479)
+....++.++++++++.|.+|..+ +++++.|+..+. ..+.++.||+|.|.--...++ .+++
T Consensus 207 l~~a~~~~nl~i~~~a~V~rI~~~-~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGI 272 (560)
T PRK02106 207 LDPALKRPNLTIVTHALTDRILFE-GKRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGI 272 (560)
T ss_pred hccccCCCCcEEEcCCEEEEEEEe-CCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCC
Confidence 333344667999999999999874 566777776443 246799999999966555543 4443
No 429
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=96.87 E-value=0.0068 Score=59.72 Aligned_cols=103 Identities=24% Similarity=0.299 Sum_probs=71.4
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccC----------CHHHHHHHHHHHHhC--CcEEEcCCceE
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLF----------TPKIASYYEEYYKSK--GVKFVKGTVLS 228 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~----------~~~~~~~~~~~l~~~--GV~i~~~~~v~ 228 (479)
+.++|+|+|+|..|+-+...|...-.+|+++.+++.++-..+ -..+.+-+....+.. +++++.. +-.
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eA-ec~ 132 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEA-ECT 132 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEec-ccE
Confidence 468999999999999999999888899999999887643211 245666666666554 5665543 345
Q ss_pred EEEEcCCCcEE-EEEeCCC----cEEeccEEEEecCCCCChh
Q 011700 229 SFDVDSNGKVV-AVNLRDG----NRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 229 ~i~~~~~g~v~-~v~~~~g----~~i~~D~Vi~a~G~~p~~~ 265 (479)
.++++ ..++. ...+.++ ..+.+|.+++|+|..|++.
T Consensus 133 ~iDp~-~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TF 173 (491)
T KOG2495|consen 133 KIDPD-NKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTF 173 (491)
T ss_pred eeccc-ccEEEEeeeccCCCcceeeecccEEEEeccCCCCCC
Confidence 66652 22221 1223344 3688999999999999885
No 430
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=96.85 E-value=0.014 Score=59.29 Aligned_cols=100 Identities=17% Similarity=0.297 Sum_probs=65.5
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc------------c---------------------c---------
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA------------R---------------------L--------- 201 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------~---------------------~--------- 201 (479)
+|+|||+|+.|+-+|..|++.|.+|.++++.+.+.. . .
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~~ 81 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRTL 81 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccCC
Confidence 589999999999999999999999999987632100 0 0
Q ss_pred --------CC-HHHHHHHHHHHHhCCcEEEcCCceEEEEEc-CCCcEEEEEe--CC-----C--cEEeccEEEEecCCCC
Q 011700 202 --------FT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVD-SNGKVVAVNL--RD-----G--NRLPTDMVVVGIGIRP 262 (479)
Q Consensus 202 --------~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~-~~g~v~~v~~--~~-----g--~~i~~D~Vi~a~G~~p 262 (479)
++ ..+.+.+.+...+.|++++.++ +..++.. ..+....+++ .+ | .++.++.||.|.|..+
T Consensus 82 ~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S 160 (398)
T TIGR02028 82 KEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS 160 (398)
T ss_pred CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence 00 1112234455667899998775 6666431 1122223332 22 3 4799999999999876
Q ss_pred Ch
Q 011700 263 NT 264 (479)
Q Consensus 263 ~~ 264 (479)
..
T Consensus 161 ~v 162 (398)
T TIGR02028 161 RV 162 (398)
T ss_pred HH
Confidence 54
No 431
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=96.82 E-value=0.0013 Score=68.37 Aligned_cols=59 Identities=15% Similarity=0.339 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhCC-cEEEcCCceEEEEEcCCCcEEEEEe---CCCc--EEeccEEEEecCCCCC
Q 011700 204 PKIASYYEEYYKSKG-VKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGIRPN 263 (479)
Q Consensus 204 ~~~~~~~~~~l~~~G-V~i~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~Vi~a~G~~p~ 263 (479)
..+.+.+.+.+++.| ++++++++|++++.++++.+ .+.+ .+|+ ++.++.||+|.|....
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s~ 247 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAKFVFIGAGGGAL 247 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcCEEEECCCcchH
Confidence 456777778888876 99999999999987555533 2332 3453 6999999999997643
No 432
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.81 E-value=0.0014 Score=66.14 Aligned_cols=34 Identities=29% Similarity=0.543 Sum_probs=30.8
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
.||+|||||++|+.||..|+++|.+ |+|+|+.+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~---V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVP---VILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCc---EEEEecccc
Confidence 3799999999999999999999988 999997653
No 433
>PRK08401 L-aspartate oxidase; Provisional
Probab=96.80 E-value=0.015 Score=60.21 Aligned_cols=97 Identities=27% Similarity=0.402 Sum_probs=65.8
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc---------------cc---------------cCC---------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---------------AR---------------LFT--------- 203 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l---------------~~---------------~~~--------- 203 (479)
..|+|||+|..|+-+|..+++.|.+|.++++.+..- .. ..+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~ 81 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS 81 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 369999999999999999999999999987642100 00 001
Q ss_pred --------------------------------------HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC
Q 011700 204 --------------------------------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD 245 (479)
Q Consensus 204 --------------------------------------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~ 245 (479)
..+.+.+.+.+++.||+++.+ .+..+.. +++++..+.. +
T Consensus 82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~-~ 158 (466)
T PRK08401 82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAI-KNGKAYGVFL-D 158 (466)
T ss_pred HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEE-C
Confidence 123344445555667777765 5666654 4566666655 5
Q ss_pred CcEEeccEEEEecCCCC
Q 011700 246 GNRLPTDMVVVGIGIRP 262 (479)
Q Consensus 246 g~~i~~D~Vi~a~G~~p 262 (479)
++.+.++.||+|||-..
T Consensus 159 g~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 159 GELLKFDATVIATGGFS 175 (466)
T ss_pred CEEEEeCeEEECCCcCc
Confidence 56789999999999654
No 434
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.78 E-value=0.0062 Score=64.04 Aligned_cols=102 Identities=19% Similarity=0.341 Sum_probs=76.7
Q ss_pred CCCEEEECCChHHHHHHHHHhhC---CCeEEEEeecCcc------ccccCC-----HHHHHHHHHHHHhCCcEEEcCCce
Q 011700 162 GGNAVVIGGGYIGMECAASLVIN---KINVTMVFPEAHC------MARLFT-----PKIASYYEEYYKSKGVKFVKGTVL 227 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~---g~~Vtlv~~~~~~------l~~~~~-----~~~~~~~~~~l~~~GV~i~~~~~v 227 (479)
..+++|||.|..|..+..++.+. -.++|++...+++ +.+.+. +++.-.-.++.+++||+++++.++
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v 82 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV 82 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence 36899999999999888887773 4678888765542 222222 233333457889999999999999
Q ss_pred EEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhh
Q 011700 228 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF 267 (479)
Q Consensus 228 ~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~ 267 (479)
..|.. +.+ .|..++|.++.+|.+++|||..|.....
T Consensus 83 ~~idr--~~k--~V~t~~g~~~~YDkLilATGS~pfi~Pi 118 (793)
T COG1251 83 IQIDR--ANK--VVTTDAGRTVSYDKLIIATGSYPFILPI 118 (793)
T ss_pred EEecc--Ccc--eEEccCCcEeecceeEEecCccccccCC
Confidence 99976 332 5778899999999999999999987643
No 435
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=96.78 E-value=0.019 Score=61.71 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=30.5
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE 194 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~ 194 (479)
.-.|+|||||.+|+-+|..|+++|.+|+++++.
T Consensus 71 ~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~ 103 (627)
T PLN02464 71 PLDVLVVGGGATGAGVALDAATRGLRVGLVERE 103 (627)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence 357999999999999999999999999999875
No 436
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=96.78 E-value=0.0018 Score=64.66 Aligned_cols=36 Identities=25% Similarity=0.306 Sum_probs=32.6
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
..+|||||||.|||+||.+|.++|..+ ++|+|.+..
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~--~~IlEa~dR 56 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFID--VLILEASDR 56 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCce--EEEEEeccc
Confidence 468999999999999999999888876 999999875
No 437
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.74 E-value=0.0018 Score=68.68 Aligned_cols=65 Identities=23% Similarity=0.290 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC-CCc--EEecc-EEEEecC-CCCChhhhh
Q 011700 203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DGN--RLPTD-MVVVGIG-IRPNTSLFE 268 (479)
Q Consensus 203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~-~g~--~i~~D-~Vi~a~G-~~p~~~l~~ 268 (479)
...+...+.+.+++.|+++++++.++++.. +++++..|... +++ ++.++ .||+|+| +.-|.++.+
T Consensus 207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~-~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~N~em~~ 276 (557)
T PRK12844 207 GAALIGRMLEAALAAGVPLWTNTPLTELIV-EDGRVVGVVVVRDGREVLIRARRGVLLASGGFGHNAEMRK 276 (557)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEE-eCCEEEEEEEEECCeEEEEEecceEEEecCCccCCHHHHH
Confidence 566777788888899999999999999987 46788777663 343 46774 6888887 555666554
No 438
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.74 E-value=0.004 Score=62.18 Aligned_cols=71 Identities=21% Similarity=0.271 Sum_probs=55.2
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc------cCCHH------HHHHHHHHHHhCCcEEEcCCceEE
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------LFTPK------IASYYEEYYKSKGVKFVKGTVLSS 229 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------~~~~~------~~~~~~~~l~~~GV~i~~~~~v~~ 229 (479)
.++++|||||..|++.|..|++.|.+|+++++.+.+-.+ .|+.. ++-.+.+......|++++.++|++
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~e 203 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVEE 203 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeeee
Confidence 578999999999999999999999999999999875433 12221 223344445567899999999999
Q ss_pred EEE
Q 011700 230 FDV 232 (479)
Q Consensus 230 i~~ 232 (479)
+..
T Consensus 204 v~G 206 (622)
T COG1148 204 VSG 206 (622)
T ss_pred ecc
Confidence 876
No 439
>PLN02676 polyamine oxidase
Probab=96.71 E-value=0.0021 Score=66.85 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=32.1
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
.+||+|||||++||+||.+|++.|.+ +|+|+|+...
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g~~--~v~vlE~~~~ 61 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAGIE--DILILEATDR 61 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCC--cEEEecCCCC
Confidence 58999999999999999999998863 3899999865
No 440
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.71 E-value=0.0053 Score=62.42 Aligned_cols=96 Identities=20% Similarity=0.284 Sum_probs=66.6
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc------------------------------------------cccc
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH------------------------------------------CMAR 200 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~------------------------------------------~l~~ 200 (479)
-.|+|||+|..|+|.|.+.++.|.++.+++.... +|..
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~ 84 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNS 84 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccC
Confidence 3699999999999999999999999988875411 0110
Q ss_pred cC-----------CHH-HHHHHHHHHH-hCCcEEEcCCceEEEEEcCCC-cEEEEEeCCCcEEeccEEEEecCC
Q 011700 201 LF-----------TPK-IASYYEEYYK-SKGVKFVKGTVLSSFDVDSNG-KVVAVNLRDGNRLPTDMVVVGIGI 260 (479)
Q Consensus 201 ~~-----------~~~-~~~~~~~~l~-~~GV~i~~~~~v~~i~~~~~g-~v~~v~~~~g~~i~~D~Vi~a~G~ 260 (479)
.- |.. ..+.+++.++ ..++.++.+. |..+.. +++ ++..|.+.+|..+.|+.||++||.
T Consensus 85 sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~-v~dli~-e~~~~v~GV~t~~G~~~~a~aVVlTTGT 156 (621)
T COG0445 85 SKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGE-VEDLIV-EEGQRVVGVVTADGPEFHAKAVVLTTGT 156 (621)
T ss_pred CCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhh-hHHHhh-cCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence 00 111 2233344443 3467766554 566655 344 588999999999999999999995
No 441
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.012 Score=56.39 Aligned_cols=101 Identities=23% Similarity=0.319 Sum_probs=78.6
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeec--Cc---------c--ccccCCHHHHHHHHHHHHhCCcEEEcCCce
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE--AH---------C--MARLFTPKIASYYEEYYKSKGVKFVKGTVL 227 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~--~~---------~--l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v 227 (479)
.+-.|+|||||+.|-..|-..++.|.+.-++..+ .. + .+....++++..++++.++..|+++...+.
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra 289 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRA 289 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhh
Confidence 4668999999999999988888877665444211 00 1 122246889999999999999999998888
Q ss_pred EEEEEc-CCCcEEEEEeCCCcEEeccEEEEecCCC
Q 011700 228 SSFDVD-SNGKVVAVNLRDGNRLPTDMVVVGIGIR 261 (479)
Q Consensus 228 ~~i~~~-~~g~v~~v~~~~g~~i~~D~Vi~a~G~~ 261 (479)
+++++. ..+....|++.+|-.+.+..+|++||.+
T Consensus 290 ~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 290 SKLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred hcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 888873 2355678999999999999999999965
No 442
>PRK07804 L-aspartate oxidase; Provisional
Probab=96.65 E-value=0.023 Score=60.06 Aligned_cols=98 Identities=20% Similarity=0.267 Sum_probs=69.4
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc---------------c---------------------------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA---------------R--------------------------- 200 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------------~--------------------------- 200 (479)
-.|+|||+|..|+-.|..+++.|.+|.++++.+.... .
T Consensus 17 ~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~~~ 96 (541)
T PRK07804 17 ADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRSLV 96 (541)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 4699999999999999999999999999886521100 0
Q ss_pred ---------------cC-----------------------------CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCC
Q 011700 201 ---------------LF-----------------------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG 236 (479)
Q Consensus 201 ---------------~~-----------------------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g 236 (479)
.| ...+.+.+.+.+++.||+++.++.+.++..++++
T Consensus 97 ~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g 176 (541)
T PRK07804 97 AEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLLTDGTG 176 (541)
T ss_pred HHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCC
Confidence 00 1223444555566678888888888888764456
Q ss_pred cEEEEEeC-------CC-cEEeccEEEEecCC
Q 011700 237 KVVAVNLR-------DG-NRLPTDMVVVGIGI 260 (479)
Q Consensus 237 ~v~~v~~~-------~g-~~i~~D~Vi~a~G~ 260 (479)
++..+... ++ ..+.++.||+|+|-
T Consensus 177 ~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG 208 (541)
T PRK07804 177 AVAGVTLHVLGEGSPDGVGAVHAPAVVLATGG 208 (541)
T ss_pred eEEEEEEEeccCCCCCcEEEEEcCeEEECCCC
Confidence 77666543 22 36889999999995
No 443
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=96.65 E-value=0.0033 Score=61.00 Aligned_cols=35 Identities=31% Similarity=0.409 Sum_probs=32.1
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
..||+|||||.+|-+.|..|+|.|.+ |.|||++-.
T Consensus 45 ~~DvIIVGAGV~GsaLa~~L~kdGRr---VhVIERDl~ 79 (509)
T KOG1298|consen 45 AADVIIVGAGVAGSALAYALAKDGRR---VHVIERDLS 79 (509)
T ss_pred cccEEEECCcchHHHHHHHHhhCCcE---EEEEecccc
Confidence 57999999999999999999999887 999999854
No 444
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=96.63 E-value=0.025 Score=54.23 Aligned_cols=57 Identities=21% Similarity=0.334 Sum_probs=45.9
Q ss_pred HHHHHHHHHhCCcEEEcCCceEEEEE-cCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700 207 ASYYEEYYKSKGVKFVKGTVLSSFDV-DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 263 (479)
Q Consensus 207 ~~~~~~~l~~~GV~i~~~~~v~~i~~-~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~ 263 (479)
...++..+++.|+.|+.+..+..++- ++++..+.|.+.+|..+.++.+|+++|.--+
T Consensus 156 lk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~ 213 (399)
T KOG2820|consen 156 LKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWIN 213 (399)
T ss_pred HHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHH
Confidence 34566778888999999999888763 3456677899999999999999999996433
No 445
>PRK12839 hypothetical protein; Provisional
Probab=96.60 E-value=0.0026 Score=67.55 Aligned_cols=66 Identities=23% Similarity=0.312 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC--CCc-EE-eccEEEEecC-CCCChhhhh
Q 011700 203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--DGN-RL-PTDMVVVGIG-IRPNTSLFE 268 (479)
Q Consensus 203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~--~g~-~i-~~D~Vi~a~G-~~p~~~l~~ 268 (479)
+..+...+.+..++.|++++.++.++++..++++++..|... +++ .+ .++.||+|+| +.-|.++..
T Consensus 213 g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~~~~~ 283 (572)
T PRK12839 213 GTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPNDVDRRK 283 (572)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCHHHHH
Confidence 456667777778889999999999999976456788887653 343 23 4588999987 444555443
No 446
>PLN02529 lysine-specific histone demethylase 1
Probab=96.59 E-value=0.0026 Score=68.72 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=32.5
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
.+||+|||||++|++||..|+++|++ |+|+|+.+.
T Consensus 160 ~~~v~viGaG~aGl~aA~~l~~~g~~---v~v~E~~~~ 194 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQLLSFGFK---VVVLEGRNR 194 (738)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCc---EEEEecCcc
Confidence 57999999999999999999999997 999999865
No 447
>PLN02985 squalene monooxygenase
Probab=96.57 E-value=0.031 Score=58.56 Aligned_cols=102 Identities=20% Similarity=0.251 Sum_probs=67.0
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc-----------------------------------------
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------------- 200 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------- 200 (479)
..+|+|||+|..|+-+|..|++.|.+|+++++.+....+
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~g~ 122 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDGK 122 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEECCE
Confidence 457999999999999999999999999999976210000
Q ss_pred ----cC-----------------CHHHHHHHHHHHHhC-CcEEEcCCceEEEEEcCCCcEEEEEe--CCCcE--EeccEE
Q 011700 201 ----LF-----------------TPKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNL--RDGNR--LPTDMV 254 (479)
Q Consensus 201 ----~~-----------------~~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~g~v~~v~~--~~g~~--i~~D~V 254 (479)
.+ ..++.+.+.+.+++. +|+++.++ +.++.. +++.+..|++ .+|++ +.+|+|
T Consensus 123 ~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~gt-vv~li~-~~~~v~gV~~~~~dG~~~~~~AdLV 200 (514)
T PLN02985 123 EAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEGT-VKSLIE-EKGVIKGVTYKNSAGEETTALAPLT 200 (514)
T ss_pred EEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEeee-EEEEEE-cCCEEEEEEEEcCCCCEEEEECCEE
Confidence 00 012233444444443 68888664 555554 3454444554 46653 568999
Q ss_pred EEecCCCCChh
Q 011700 255 VVGIGIRPNTS 265 (479)
Q Consensus 255 i~a~G~~p~~~ 265 (479)
|.|-|......
T Consensus 201 VgADG~~S~vR 211 (514)
T PLN02985 201 VVCDGCYSNLR 211 (514)
T ss_pred EECCCCchHHH
Confidence 99999876653
No 448
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=96.53 E-value=0.031 Score=59.59 Aligned_cols=50 Identities=22% Similarity=0.232 Sum_probs=37.0
Q ss_pred HHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe---CCCc--EEeccEEEEecCCC
Q 011700 211 EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGIR 261 (479)
Q Consensus 211 ~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~Vi~a~G~~ 261 (479)
.+.+++.||+++.++.++++.. +++++..+.. .+|+ .+.++.||+|+|-.
T Consensus 136 ~~~~~~~gv~i~~~~~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~ 190 (566)
T TIGR01812 136 YEQCLKLGVSFFNEYFALDLIH-DDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGY 190 (566)
T ss_pred HHHHHHcCCEEEeccEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCeEEECCCcc
Confidence 3345566899999999999876 4677766553 3554 58899999999953
No 449
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.52 E-value=0.0029 Score=67.00 Aligned_cols=65 Identities=15% Similarity=0.152 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC-CCc--EEec-cEEEEecC-CCCChhhhh
Q 011700 203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DGN--RLPT-DMVVVGIG-IRPNTSLFE 268 (479)
Q Consensus 203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~-~g~--~i~~-D~Vi~a~G-~~p~~~l~~ 268 (479)
...+...+.+.+++.||++++++.++++.. +++++..|... +++ .+.+ ..||+|+| +.-|.++.+
T Consensus 216 G~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~em~~ 285 (564)
T PRK12845 216 GQALAAGLFAGVLRAGIPIWTETSLVRLTD-DGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDMEMRW 285 (564)
T ss_pred hHHHHHHHHHHHHHCCCEEEecCEeeEEEe-cCCEEEEEEEEECCcEEEEEcCCEEEEecCCccccHHHHH
Confidence 577888888888999999999999999886 46888777543 343 3555 57888887 555555443
No 450
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=96.50 E-value=0.033 Score=57.39 Aligned_cols=101 Identities=21% Similarity=0.320 Sum_probs=65.9
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc-----------------c----------------cc--------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-----------------A----------------RL-------- 201 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-----------------~----------------~~-------- 201 (479)
-.|+|||+|+.|.-+|..|++.|.+|.++++.+... + ..
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~~ 119 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGKT 119 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEeccc
Confidence 479999999999999999999999999998763210 0 00
Q ss_pred ---------CC-HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCC-CcEEEEEeCC-------C--cEEeccEEEEecCCC
Q 011700 202 ---------FT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSN-GKVVAVNLRD-------G--NRLPTDMVVVGIGIR 261 (479)
Q Consensus 202 ---------~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~-g~v~~v~~~~-------g--~~i~~D~Vi~a~G~~ 261 (479)
++ ..+.+.+.+...+.|++++.+ .+.+++...+ +....+.+.+ | .++.+|.||-|.|..
T Consensus 120 ~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~ 198 (450)
T PLN00093 120 LKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGAN 198 (450)
T ss_pred CCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcc
Confidence 00 112234455566779999866 4666653211 1112343321 3 479999999999976
Q ss_pred CCh
Q 011700 262 PNT 264 (479)
Q Consensus 262 p~~ 264 (479)
...
T Consensus 199 S~v 201 (450)
T PLN00093 199 SRV 201 (450)
T ss_pred hHH
Confidence 543
No 451
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=96.46 E-value=0.017 Score=53.73 Aligned_cols=100 Identities=20% Similarity=0.295 Sum_probs=66.6
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccccc---------C----------C---------------------
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL---------F----------T--------------------- 203 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~---------~----------~--------------------- 203 (479)
+++|||+|..|+-+|..|+..|.+||+++++.-+-.+. | +
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~ 82 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP 82 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence 68999999999999999999999999999872211110 0 1
Q ss_pred ----------------------HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC-cEEeccEEEEecCC
Q 011700 204 ----------------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGI 260 (479)
Q Consensus 204 ----------------------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g-~~i~~D~Vi~a~G~ 260 (479)
+.|+.. .+.| ....+++++++|+++... ++...+..++| ....+|.|++++..
T Consensus 83 ~~~~~~~~~~~~~~d~~pyvg~pgmsal-ak~L-AtdL~V~~~~rVt~v~~~--~~~W~l~~~~g~~~~~~d~vvla~PA 158 (331)
T COG3380 83 AVWTFTGDGSPPRGDEDPYVGEPGMSAL-AKFL-ATDLTVVLETRVTEVART--DNDWTLHTDDGTRHTQFDDVVLAIPA 158 (331)
T ss_pred cccccccCCCCCCCCCCccccCcchHHH-HHHH-hccchhhhhhhhhhheec--CCeeEEEecCCCcccccceEEEecCC
Confidence 112222 1222 234677888888888763 33456777665 46789999999875
Q ss_pred CCChhhh
Q 011700 261 RPNTSLF 267 (479)
Q Consensus 261 ~p~~~l~ 267 (479)
--...|+
T Consensus 159 PQ~~~LL 165 (331)
T COG3380 159 PQTATLL 165 (331)
T ss_pred Ccchhhc
Confidence 4333443
No 452
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=96.46 E-value=0.0031 Score=72.45 Aligned_cols=35 Identities=29% Similarity=0.467 Sum_probs=32.5
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
++||||||+|.||++||.++++.|.+ |+|+||.+.
T Consensus 409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~---VivlEK~~~ 443 (1167)
T PTZ00306 409 PARVIVVGGGLAGCSAAIEAASCGAQ---VILLEKEAK 443 (1167)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEEccCC
Confidence 58999999999999999999999987 999999865
No 453
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=96.43 E-value=0.032 Score=59.78 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=32.6
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecC
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA 195 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~ 195 (479)
+..+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 46899999999999999999999999999999864
No 454
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=96.40 E-value=0.038 Score=56.77 Aligned_cols=64 Identities=14% Similarity=0.205 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhCCcEEEcCCceEEEEEcC-CCcEEEEEeCC-CcEEeccEEEEecC-CCCChhhhh
Q 011700 205 KIASYYEEYYKSKGVKFVKGTVLSSFDVDS-NGKVVAVNLRD-GNRLPTDMVVVGIG-IRPNTSLFE 268 (479)
Q Consensus 205 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~-~g~v~~v~~~~-g~~i~~D~Vi~a~G-~~p~~~l~~ 268 (479)
.+.+.+.+.+++.|++++++++++++..++ ++++..+...+ +.++.++.||+|+| +..|.+++.
T Consensus 124 ~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~~ 190 (432)
T TIGR02485 124 ALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWLR 190 (432)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHHH
Confidence 345566666788899999999999998643 56676666543 35789999999999 556666554
No 455
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=96.37 E-value=0.0037 Score=65.32 Aligned_cols=56 Identities=14% Similarity=0.265 Sum_probs=40.8
Q ss_pred HHHHhCCcEEEcCCceEEEEEcCC--CcEEEEEeC---CCc--EEeccEEEEecCCCCChhhh
Q 011700 212 EYYKSKGVKFVKGTVLSSFDVDSN--GKVVAVNLR---DGN--RLPTDMVVVGIGIRPNTSLF 267 (479)
Q Consensus 212 ~~l~~~GV~i~~~~~v~~i~~~~~--g~v~~v~~~---~g~--~i~~D~Vi~a~G~~p~~~l~ 267 (479)
+.++..++++++++.|.+|+.+++ +++..+... +|+ ++.|+.||+|.|.--+..|+
T Consensus 222 ~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLL 284 (544)
T TIGR02462 222 DDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQIL 284 (544)
T ss_pred hhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHH
Confidence 334455699999999999987544 356666543 343 58999999999977776654
No 456
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.35 E-value=0.0042 Score=67.61 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=32.2
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
..+|+|||||++|++||..|.+.|++ |+|+|+...
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~---v~v~E~~~r 272 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFK---VVVLEGRAR 272 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCc---EEEEecccc
Confidence 47899999999999999999999887 999999865
No 457
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=96.35 E-value=0.0044 Score=60.96 Aligned_cols=35 Identities=26% Similarity=0.470 Sum_probs=31.8
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
+.+|||||||.+|+++|..|.|.|++ |+|+|+...
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~---v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGID---VVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCe---EEEEeeccc
Confidence 36899999999999999999999998 899998654
No 458
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=96.31 E-value=0.045 Score=58.97 Aligned_cols=104 Identities=21% Similarity=0.341 Sum_probs=71.1
Q ss_pred CCCEEEECCChHHHHHHHHHhhC-CCeEEEEeecCccccc----------------------------------------
Q 011700 162 GGNAVVIGGGYIGMECAASLVIN-KINVTMVFPEAHCMAR---------------------------------------- 200 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~~---------------------------------------- 200 (479)
.-.|+|||+|+.|+-+|..|++. |.+|+++++.+.....
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~ 111 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDP 111 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCC
Confidence 35799999999999999999995 9999999976221000
Q ss_pred -------------------------cCCH-HHHHHHHHHHHhCC--cEEEcCCceEEEEEcCCC-cEEEEEeC------C
Q 011700 201 -------------------------LFTP-KIASYYEEYYKSKG--VKFVKGTVLSSFDVDSNG-KVVAVNLR------D 245 (479)
Q Consensus 201 -------------------------~~~~-~~~~~~~~~l~~~G--V~i~~~~~v~~i~~~~~g-~v~~v~~~------~ 245 (479)
.+.+ .+.+.+.+.+++.| +++..++++++++.++++ ..+.+.+. +
T Consensus 112 ~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~ 191 (634)
T PRK08294 112 ADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHE 191 (634)
T ss_pred ccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCC
Confidence 0001 13344555566655 577889999999864332 22235553 3
Q ss_pred C--cEEeccEEEEecCCCCChh
Q 011700 246 G--NRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 246 g--~~i~~D~Vi~a~G~~p~~~ 265 (479)
| +++.+|+||-|=|.+....
T Consensus 192 g~~~tv~A~~lVGaDGa~S~VR 213 (634)
T PRK08294 192 GEEETVRAKYVVGCDGARSRVR 213 (634)
T ss_pred CceEEEEeCEEEECCCCchHHH
Confidence 5 5799999999999876553
No 459
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.29 E-value=0.0075 Score=59.45 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=32.7
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA 42 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~ 42 (479)
.++|+|+|||.+||++|++|++++. +..|+|+|..+..
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p-~~~i~l~Ea~~Rv 48 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGP-DVTITLFEASPRV 48 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCC-CceEEEEecCCcc
Confidence 3799999999999999999999765 4568889999763
No 460
>PRK08275 putative oxidoreductase; Provisional
Probab=96.26 E-value=0.061 Score=57.12 Aligned_cols=56 Identities=16% Similarity=0.197 Sum_probs=40.7
Q ss_pred HHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe---CCCc--EEeccEEEEecCCCC
Q 011700 207 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGIRP 262 (479)
Q Consensus 207 ~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~Vi~a~G~~p 262 (479)
.+.+.+.+++.||+++.++.+.++..++++++..+.. .+|+ .+.++.||+|+|-..
T Consensus 140 ~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 140 KKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 3445555667889999999999998743677766653 3554 578999999999654
No 461
>PRK06175 L-aspartate oxidase; Provisional
Probab=96.24 E-value=0.051 Score=55.77 Aligned_cols=55 Identities=11% Similarity=0.219 Sum_probs=38.7
Q ss_pred HHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEEEE-eCCCc--EEeccEEEEecCCC
Q 011700 206 IASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVN-LRDGN--RLPTDMVVVGIGIR 261 (479)
Q Consensus 206 ~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~v~-~~~g~--~i~~D~Vi~a~G~~ 261 (479)
+.+.+.+.+++ .||+++.++.+.++.. +++++..+. ..++. .+.++.||+|+|--
T Consensus 130 l~~~L~~~~~~~~gV~i~~~t~v~~Li~-~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~ 188 (433)
T PRK06175 130 VEKILLKKVKKRKNITIIENCYLVDIIE-NDNTCIGAICLKDNKQINIYSKVTILATGGI 188 (433)
T ss_pred HHHHHHHHHHhcCCCEEEECcEeeeeEe-cCCEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence 34445555544 5899999999999876 456666644 33444 58899999999963
No 462
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.23 E-value=0.052 Score=56.91 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=30.1
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPE 194 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~ 194 (479)
-.|+|||||.+|+-+|..|+++|.+|.++++.
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~ 38 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGRGLKVLLCEKD 38 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 46999999999999999999999999999977
No 463
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=96.23 E-value=0.0068 Score=57.59 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=32.4
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA 42 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~ 42 (479)
+|++|||+|.+|+..|..|+++|.+ |.|||+.++.
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~---VLIvekR~HI 36 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKR---VLIVEKRNHI 36 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCE---EEEEeccccC
Confidence 8999999999999999999998987 9999999763
No 464
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=96.21 E-value=0.044 Score=57.24 Aligned_cols=56 Identities=16% Similarity=0.234 Sum_probs=39.8
Q ss_pred HHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEEEEeCC-C--cEEeccEEEEecCCCC
Q 011700 206 IASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRD-G--NRLPTDMVVVGIGIRP 262 (479)
Q Consensus 206 ~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~v~~~~-g--~~i~~D~Vi~a~G~~p 262 (479)
+.+.+.+.+++ .||+++.++.+.++.. +++.+..+...+ + ..+.++.||+|+|-..
T Consensus 130 l~~~L~~~~~~~~gi~i~~~~~v~~l~~-~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 130 VITTLVKKALNHPNIRIIEGENALDLLI-ETGRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHhcCCcEEEECeEeeeeec-cCCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 34445555655 5899999999999876 456666565543 3 3689999999999654
No 465
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.20 E-value=0.059 Score=57.71 Aligned_cols=52 Identities=21% Similarity=0.229 Sum_probs=38.1
Q ss_pred HHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe---CCCc--EEeccEEEEecCC
Q 011700 209 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGI 260 (479)
Q Consensus 209 ~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~Vi~a~G~ 260 (479)
.+.+.+++.||+++.++.+.++..++++++..+.. .+|+ .+.++.||+|||-
T Consensus 154 ~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 210 (598)
T PRK09078 154 TLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGG 210 (598)
T ss_pred HHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 34445566788999998899887644477877764 3554 6789999999994
No 466
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.20 E-value=0.05 Score=57.84 Aligned_cols=51 Identities=22% Similarity=0.091 Sum_probs=37.3
Q ss_pred HHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC---CCc--EEeccEEEEecCC
Q 011700 209 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DGN--RLPTDMVVVGIGI 260 (479)
Q Consensus 209 ~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~---~g~--~i~~D~Vi~a~G~ 260 (479)
.+.+.+++.||+++.++.++++.. ++|++..+... +++ .+.++.||+|||-
T Consensus 141 ~L~~~~~~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 196 (566)
T PRK06452 141 TLFERTSGLNVDFYNEWFSLDLVT-DNKKVVGIVAMQMKTLTPFFFKTKAVVLATGG 196 (566)
T ss_pred HHHHHHHhCCCEEEeCcEEEEEEE-ECCEEEEEEEEECCCCeEEEEEeCeEEECCCc
Confidence 344445556888888888888886 47888877654 332 5789999999993
No 467
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=96.14 E-value=0.06 Score=57.67 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=33.1
Q ss_pred CcEEEcCCceEEEEEcCCCcEEEEEeC---CCc--EEeccEEEEecCC
Q 011700 218 GVKFVKGTVLSSFDVDSNGKVVAVNLR---DGN--RLPTDMVVVGIGI 260 (479)
Q Consensus 218 GV~i~~~~~v~~i~~~~~g~v~~v~~~---~g~--~i~~D~Vi~a~G~ 260 (479)
||+++.++.+.++..++++++..+... +++ .+.++.||+|||-
T Consensus 147 gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG 194 (603)
T TIGR01811 147 LVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGG 194 (603)
T ss_pred CcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 788888888888876445677777653 343 5789999999985
No 468
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=96.12 E-value=0.071 Score=57.27 Aligned_cols=32 Identities=28% Similarity=0.299 Sum_probs=29.0
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPE 194 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~ 194 (479)
-.|+|||+|..|+-.|..+++.|.+|.++++.
T Consensus 30 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~ 61 (617)
T PTZ00139 30 YDAVVVGAGGAGLRAALGLVELGYKTACISKL 61 (617)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCcEEEEecc
Confidence 36999999999999999999999999998865
No 469
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.12 E-value=0.063 Score=57.86 Aligned_cols=47 Identities=26% Similarity=0.326 Sum_probs=36.2
Q ss_pred HHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC---CCc--EEeccEEEEecCC
Q 011700 213 YYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DGN--RLPTDMVVVGIGI 260 (479)
Q Consensus 213 ~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~---~g~--~i~~D~Vi~a~G~ 260 (479)
.+++.||+++.++.+.++.. +++++..+... +|+ .+.++.||+|||-
T Consensus 179 ~~~~~gV~i~~~t~v~~Li~-d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG 230 (640)
T PRK07573 179 QIAAGTVKMYTRTEMLDLVV-VDGRARGIVARNLVTGEIERHTADAVVLATGG 230 (640)
T ss_pred HHHhcCCEEEeceEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence 45567899999999998876 46777777654 453 5889999999995
No 470
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.09 E-value=0.011 Score=43.49 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=29.4
Q ss_pred EECCChHHHHHHHHHhhCCCeEEEEeecCcccc
Q 011700 167 VIGGGYIGMECAASLVINKINVTMVFPEAHCMA 199 (479)
Q Consensus 167 VIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~ 199 (479)
|||+|..|+-+|..|++.|.+|+++++.+++-.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG 33 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGG 33 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCc
Confidence 799999999999999999999999999987643
No 471
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=96.08 E-value=0.066 Score=56.16 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=30.1
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPE 194 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~ 194 (479)
-.|+|||||.+|+-+|..|+++|.+|+++++.
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~ 38 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGRGLSVLLCEQD 38 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 46999999999999999999999999999976
No 472
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.07 E-value=0.025 Score=58.45 Aligned_cols=82 Identities=21% Similarity=0.242 Sum_probs=58.8
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 240 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~ 240 (479)
.+++++|+|+|.+|+.+|..|.+.|.+|+++++.+. +.+.+ ..+.+.+.|++++.+....+
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~-------~~~~~-~~~~l~~~~~~~~~~~~~~~----------- 64 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEE-------DQLKE-ALEELGELGIELVLGEYPEE----------- 64 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-------HHHHH-HHHHHHhcCCEEEeCCcchh-----------
Confidence 468999999999999999999999999999977531 22222 23446667887765543210
Q ss_pred EEeCCCcEEeccEEEEecCCCCChhhh
Q 011700 241 VNLRDGNRLPTDMVVVGIGIRPNTSLF 267 (479)
Q Consensus 241 v~~~~g~~i~~D~Vi~a~G~~p~~~l~ 267 (479)
..-.+|.|+.++|..|+.+.+
T Consensus 65 ------~~~~~d~vv~~~g~~~~~~~~ 85 (450)
T PRK14106 65 ------FLEGVDLVVVSPGVPLDSPPV 85 (450)
T ss_pred ------HhhcCCEEEECCCCCCCCHHH
Confidence 011479999999998887754
No 473
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.07 E-value=0.0056 Score=64.54 Aligned_cols=38 Identities=26% Similarity=0.456 Sum_probs=33.4
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
|..++|+||||+|+||...|.+|++.|.+ |+|+|..+.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~---VllLEaG~~ 41 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLS---VLVLEAGGP 41 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCe---EEEEeCCCC
Confidence 34579999999999999999999977776 999999964
No 474
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=96.06 E-value=0.086 Score=56.57 Aligned_cols=32 Identities=25% Similarity=0.336 Sum_probs=29.0
Q ss_pred CCEEEECCChHHHHHHHHHhhC--CCeEEEEeec
Q 011700 163 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPE 194 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~--g~~Vtlv~~~ 194 (479)
-.|+|||+|..|+-.|..+++. |.+|.++++.
T Consensus 12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~ 45 (608)
T PRK06854 12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKA 45 (608)
T ss_pred eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 3699999999999999999998 9999999865
No 475
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.98 E-value=0.089 Score=56.13 Aligned_cols=53 Identities=13% Similarity=0.148 Sum_probs=38.7
Q ss_pred HHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe---CCCc--EEeccEEEEecCCC
Q 011700 208 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGIR 261 (479)
Q Consensus 208 ~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~Vi~a~G~~ 261 (479)
+.+.+.+++.||+++.++.+.++.. +++++..+.. .+++ .+.++.||+|+|--
T Consensus 139 ~~L~~~~~~~gi~i~~~t~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~ 196 (575)
T PRK05945 139 HELVNNLRRYGVTIYDEWYVMRLIL-EDNQAKGVVMYHIADGRLEVVRAKAVMFATGGY 196 (575)
T ss_pred HHHHHHHhhCCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence 3455556667899999999999876 4676665542 3554 58899999999964
No 476
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.97 E-value=0.096 Score=55.96 Aligned_cols=51 Identities=12% Similarity=0.104 Sum_probs=36.6
Q ss_pred HHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe---CCCc--EEeccEEEEecCC
Q 011700 210 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGI 260 (479)
Q Consensus 210 ~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~Vi~a~G~ 260 (479)
+.+..++.||+++.++.+.++..++++++..+.. .+|+ .+.++.||+|||-
T Consensus 149 L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 204 (588)
T PRK08958 149 LYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGG 204 (588)
T ss_pred HHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence 3334455678888888888887644678877764 3454 5789999999994
No 477
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.88 E-value=0.039 Score=55.22 Aligned_cols=32 Identities=31% Similarity=0.360 Sum_probs=29.2
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPE 194 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~ 194 (479)
-.|+|||||..|+|.|.+.++.|.+.++++.+
T Consensus 29 ~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred ccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 47999999999999999999999999888765
No 478
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.83 E-value=0.11 Score=55.09 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=37.8
Q ss_pred HHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe---CCCc--EEeccEEEEecCCC
Q 011700 208 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGIR 261 (479)
Q Consensus 208 ~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~Vi~a~G~~ 261 (479)
..+.+.+++.||+++.++.+.++..++++++..+.. .+++ .+.++.||+|||--
T Consensus 138 ~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 196 (543)
T PRK06263 138 MGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGA 196 (543)
T ss_pred HHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence 334445566789999999999987644444666543 4554 58899999999953
No 479
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=95.80 E-value=0.012 Score=57.61 Aligned_cols=101 Identities=17% Similarity=0.256 Sum_probs=66.6
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCC-CCCcE-EEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGV-PPGEL-CIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWY 81 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~-~~~~V-~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (479)
+..+-|||+|.-|-..|..|.|.-. ...+| -|++..- + +. .-+|.+. .....+.+
T Consensus 347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~----n---m~---------kiLPeyl-------s~wt~eki 403 (659)
T KOG1346|consen 347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKY----N---ME---------KILPEYL-------SQWTIEKI 403 (659)
T ss_pred cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccC----C---hh---------hhhHHHH-------HHHHHHHH
Confidence 4679999999999999999987522 12233 3443331 1 00 0112110 01223446
Q ss_pred HHcCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCccc
Q 011700 82 NEHGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALK 127 (479)
Q Consensus 82 ~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~ 127 (479)
++.||.++.+..|.++....+ .+.+.+|.++..|.+|+|+|..|+.
T Consensus 404 r~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ 451 (659)
T KOG1346|consen 404 RKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNS 451 (659)
T ss_pred HhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCch
Confidence 678999999988887765544 4567899999999999999999864
No 480
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.75 E-value=0.11 Score=56.02 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=28.8
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPE 194 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~ 194 (479)
-.|+|||+|..|+-+|..+++.|.+|.++++.
T Consensus 9 ~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~ 40 (626)
T PRK07803 9 YDVVVIGAGGAGLRAAIEARERGLRVAVVCKS 40 (626)
T ss_pred ecEEEECcCHHHHHHHHHHHHCCCCEEEEecc
Confidence 36999999999999999999999999998765
No 481
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.73 E-value=0.15 Score=54.48 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=29.0
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPE 194 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~ 194 (479)
-.|+|||+|..|+-.|..+++.|.+|++++..
T Consensus 13 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~ 44 (591)
T PRK07057 13 FDVVIVGAGGSGMRASLQLARAGLSVAVLSKV 44 (591)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence 46999999999999999999999999998874
No 482
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.67 E-value=0.13 Score=55.02 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=30.8
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 196 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 196 (479)
-.|+|||+|..|+-.|..+++.|.+|.++++.+.
T Consensus 12 ~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~ 45 (584)
T PRK12835 12 VDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAH 45 (584)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 4699999999999999999999999999987643
No 483
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=95.67 E-value=0.093 Score=53.37 Aligned_cols=86 Identities=22% Similarity=0.233 Sum_probs=52.2
Q ss_pred hHHHHHHHHHhhCCCeE------EEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCC--C-cEEEEE
Q 011700 172 YIGMECAASLVINKINV------TMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSN--G-KVVAVN 242 (479)
Q Consensus 172 ~~g~E~A~~l~~~g~~V------tlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~--g-~v~~v~ 242 (479)
.+++|+-..|.++=.++ .-+.+.. . ..-+.+..-+.++|+++||+|..+++|+.++-+.+ . .+..+.
T Consensus 173 hSa~E~rRyl~Rf~h~~~~l~~l~~l~~T~--Y--NQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~ 248 (500)
T PF06100_consen 173 HSAVEFRRYLHRFIHEIPGLNDLSGLDRTK--Y--NQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIH 248 (500)
T ss_pred hhHHHHHHHHHHHHHhcCCCCCccccccCc--c--ccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEE
Confidence 35778877777652221 1111111 0 11345677789999999999999999999876322 2 233343
Q ss_pred e-CCCc--EE---eccEEEEecCCC
Q 011700 243 L-RDGN--RL---PTDMVVVGIGIR 261 (479)
Q Consensus 243 ~-~~g~--~i---~~D~Vi~a~G~~ 261 (479)
+ .+|. ++ +-|+|++..|.-
T Consensus 249 ~~~~g~~~~i~l~~~DlV~vT~GS~ 273 (500)
T PF06100_consen 249 IEQDGKEETIDLGPDDLVFVTNGSM 273 (500)
T ss_pred EEcCCCeeEEEeCCCCEEEEECCcc
Confidence 3 3442 23 468888888854
No 484
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=95.66 E-value=0.13 Score=55.31 Aligned_cols=32 Identities=28% Similarity=0.357 Sum_probs=28.8
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPE 194 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~ 194 (479)
-.|+|||+|..|+-.|..+++.|.+|.+++..
T Consensus 51 ~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~ 82 (635)
T PLN00128 51 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 82 (635)
T ss_pred cCEEEECccHHHHHHHHHHHhcCCcEEEEEcC
Confidence 36999999999999999999999999998765
No 485
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.61 E-value=0.1 Score=52.68 Aligned_cols=102 Identities=21% Similarity=0.281 Sum_probs=61.8
Q ss_pred CCEEEECCChHHHHHHHHHhhCC---CeEEEEeecCccc-------------------------cc--------------
Q 011700 163 GNAVVIGGGYIGMECAASLVINK---INVTMVFPEAHCM-------------------------AR-------------- 200 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g---~~Vtlv~~~~~~l-------------------------~~-------------- 200 (479)
.+|+|||+|++|+.+|..|.+.- ..++++++.+.+. +.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 47999999999999999998751 2388888763321 00
Q ss_pred -------------------cCCHHHHHHHHHHHHhCC---cEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEec
Q 011700 201 -------------------LFTPKIASYYEEYYKSKG---VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI 258 (479)
Q Consensus 201 -------------------~~~~~~~~~~~~~l~~~G---V~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~ 258 (479)
.|...+.+.+...+++.- |.++.. +.+.+...+++....+...+|....||.+|++|
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~-~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat 160 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIRE-EATSVRQDTNAGGYLVTTADGPSEIADIIVLAT 160 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEee-eeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence 000112222222232222 444433 334444433455556777899999999999999
Q ss_pred CCCCChh
Q 011700 259 GIRPNTS 265 (479)
Q Consensus 259 G~~p~~~ 265 (479)
|..+...
T Consensus 161 gh~~~~~ 167 (474)
T COG4529 161 GHSAPPA 167 (474)
T ss_pred cCCCCCc
Confidence 9766543
No 486
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=95.60 E-value=0.01 Score=62.67 Aligned_cols=58 Identities=12% Similarity=0.293 Sum_probs=41.6
Q ss_pred HHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC-c---EEeccEEEEecCCCCChhhh
Q 011700 209 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-N---RLPTDMVVVGIGIRPNTSLF 267 (479)
Q Consensus 209 ~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g-~---~i~~D~Vi~a~G~~p~~~l~ 267 (479)
.+....++.+++++.++.|.+|.. ++++++.|++.++ + .+.++.||+|.|.--...++
T Consensus 199 ~l~~a~~r~nl~i~~~~~V~rI~~-~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LL 260 (532)
T TIGR01810 199 YLHPAMKRPNLEVQTRAFVTKINF-EGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLL 260 (532)
T ss_pred HhhhhccCCCeEEEeCCEEEEEEe-cCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHH
Confidence 344444467899999999999987 4667778877543 2 35899999999974444433
No 487
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=95.58 E-value=0.034 Score=61.35 Aligned_cols=33 Identities=30% Similarity=0.328 Sum_probs=30.3
Q ss_pred CEEEECCChHHHHHHHHHhhC--CCeEEEEeecCc
Q 011700 164 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEAH 196 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~ 196 (479)
+|+|||+|+.|+-+|..|++. |.+|+++++.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 689999999999999999998 899999998764
No 488
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.56 E-value=0.15 Score=54.45 Aligned_cols=31 Identities=23% Similarity=0.478 Sum_probs=27.9
Q ss_pred CEEEECCChHHHHHHHHHhhCC---CeEEEEeec
Q 011700 164 NAVVIGGGYIGMECAASLVINK---INVTMVFPE 194 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g---~~Vtlv~~~ 194 (479)
.|+|||+|..|+-.|..+++.| .+|.++++.
T Consensus 7 DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~ 40 (577)
T PRK06069 7 DVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKT 40 (577)
T ss_pred CEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcc
Confidence 5999999999999999999988 799998864
No 489
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.53 E-value=0.19 Score=53.63 Aligned_cols=57 Identities=16% Similarity=0.140 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhCCcEEEcCCceEEEEEcCC---CcEEEEEe---CCCc--EEeccEEEEecCCCC
Q 011700 206 IASYYEEYYKSKGVKFVKGTVLSSFDVDSN---GKVVAVNL---RDGN--RLPTDMVVVGIGIRP 262 (479)
Q Consensus 206 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~---g~v~~v~~---~~g~--~i~~D~Vi~a~G~~p 262 (479)
+.+.+.+.+++.||+++.++.+.++..+++ +++..+.. .+++ .+.++.||+|||-..
T Consensus 142 i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 142 ILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 334455556678899999999999876332 67776654 3454 578999999999643
No 490
>PLN03000 amine oxidase
Probab=95.50 E-value=0.017 Score=63.11 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=32.2
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
..+|+|||||++|+.||..|.+.|++ |+|+|+.+.
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~---V~VlE~~~r 218 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFK---VTVLEGRKR 218 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCc---EEEEEccCc
Confidence 47999999999999999999999887 999999875
No 491
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=95.44 E-value=0.018 Score=53.08 Aligned_cols=94 Identities=17% Similarity=0.313 Sum_probs=58.2
Q ss_pred CEEEECCChHHHHHHHHHhhC--CCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcC--------Cc---eEEE
Q 011700 164 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKG--------TV---LSSF 230 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~--------~~---v~~i 230 (479)
+.+|||||..|+.||..|+.+ ..++.++..++-+-.- .--+.+.+++++..|+=... .- |..+
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksv----tn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~v~~~ 76 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSV----TNYQKIGQYLEKFDVKEQNCHELGPDFRRFLNDVVTW 76 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHH----hhHHHHHHHHHhcCccccchhhhcccHHHHHHhhhhh
Confidence 368999999999999999876 4577777766433221 11122333343333321100 11 2222
Q ss_pred EEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700 231 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 231 ~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~ 265 (479)
.. .-..+.+.+|.++.++.+++++|.+|-..
T Consensus 77 ~s----~ehci~t~~g~~~ky~kKOG~tg~kPklq 107 (334)
T KOG2755|consen 77 DS----SEHCIHTQNGEKLKYFKLCLCTGYKPKLQ 107 (334)
T ss_pred cc----ccceEEecCCceeeEEEEEEecCCCccee
Confidence 21 11357889999999999999999999653
No 492
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.42 E-value=0.057 Score=46.49 Aligned_cols=83 Identities=22% Similarity=0.252 Sum_probs=54.9
Q ss_pred EEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC
Q 011700 165 AVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 244 (479)
Q Consensus 165 vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~ 244 (479)
++|+|+|.+|.-+|..|.+.|.+|+++.|.+ . .+.+++.|+.+.....-..+.. .....
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~-------------~~~~~~~g~~~~~~~~~~~~~~-------~~~~~ 59 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-R-------------LEAIKEQGLTITGPDGDETVQP-------PIVIS 59 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-H-------------HHHHHHHCEEEEETTEEEEEEE-------EEEES
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-c-------------HHhhhheeEEEEecccceeccc-------ccccC
Confidence 6899999999999999999999999998763 1 1236778998887652111211 11222
Q ss_pred CC--cEEeccEEEEecCCCCChhhhh
Q 011700 245 DG--NRLPTDMVVVGIGIRPNTSLFE 268 (479)
Q Consensus 245 ~g--~~i~~D~Vi~a~G~~p~~~l~~ 268 (479)
+. ..-++|.|++++-.......++
T Consensus 60 ~~~~~~~~~D~viv~vKa~~~~~~l~ 85 (151)
T PF02558_consen 60 APSADAGPYDLVIVAVKAYQLEQALQ 85 (151)
T ss_dssp SHGHHHSTESEEEE-SSGGGHHHHHH
T ss_pred cchhccCCCcEEEEEecccchHHHHH
Confidence 21 2456899999976555444443
No 493
>PLN02785 Protein HOTHEAD
Probab=95.41 E-value=0.017 Score=61.45 Aligned_cols=34 Identities=26% Similarity=0.519 Sum_probs=30.4
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
.||+||||||.||+.+|.+|++ ..+ |+|||+++.
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~---VLllE~G~~ 88 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQ-NFS---VLLLERGGV 88 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhc-CCc---EEEEecCCC
Confidence 5999999999999999999998 454 999999863
No 494
>PRK08071 L-aspartate oxidase; Provisional
Probab=95.39 E-value=0.12 Score=54.39 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=26.1
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPE 194 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~ 194 (479)
..|+|||+|..|+-.|..+.+ |.+|.++++.
T Consensus 4 ~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~ 34 (510)
T PRK08071 4 ADVIIIGSGIAALTVAKELCH-EYNVIIITKK 34 (510)
T ss_pred cCEEEECccHHHHHHHHHhhc-CCCEEEEecc
Confidence 468999999999999988876 8889888765
No 495
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=95.39 E-value=0.004 Score=55.36 Aligned_cols=35 Identities=34% Similarity=0.307 Sum_probs=30.4
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
.||||||+|.+||+||+..+++ .++.+|++||..-
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~-rPdlkvaIIE~SV 111 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKN-RPDLKVAIIESSV 111 (328)
T ss_pred cceEEECCCccccceeeeeecc-CCCceEEEEEeee
Confidence 5999999999999999999874 4567799999874
No 496
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=95.32 E-value=0.11 Score=51.31 Aligned_cols=34 Identities=26% Similarity=0.510 Sum_probs=31.2
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 196 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 196 (479)
.+|+|||||..|+-+|.+|.+.|.+|.+++.+..
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESRED 36 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 5899999999999999999999999999987643
No 497
>PLN02976 amine oxidase
Probab=95.26 E-value=0.022 Score=64.94 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=31.9
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
.++|+|||||++|+++|..|.+.|++ |+|+|+.+.
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~---V~VlEa~~~ 727 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFS---VTVLEARSR 727 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCc---EEEEeeccC
Confidence 47899999999999999999999886 999999864
No 498
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.24 E-value=0.03 Score=57.87 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=31.4
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
+.++++|||+|..|+.+|..|++.|++ |+++|++.
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~---V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAK---VILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCc
Confidence 457899999999999999999999987 89998874
No 499
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.23 E-value=0.21 Score=53.42 Aligned_cols=33 Identities=21% Similarity=0.417 Sum_probs=29.4
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE 194 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~ 194 (479)
+..|+|||+|..|+-.|..+++.|.+|.++++.
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~ 35 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLV 35 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEcc
Confidence 347999999999999999999999999999853
No 500
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=95.22 E-value=0.026 Score=56.93 Aligned_cols=35 Identities=26% Similarity=0.216 Sum_probs=32.0
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 197 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 197 (479)
++|+|||+|++|+|+|..|++.|.+|+++++.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 57999999999999999999999999999976554
Done!