Query 011700
Match_columns 479
No_of_seqs 483 out of 3405
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 13:33:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011700.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011700hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eqs_A Coenzyme A disulfide re 100.0 2E-57 6.9E-62 463.9 35.0 399 5-429 1-425 (437)
2 3lxd_A FAD-dependent pyridine 100.0 7.8E-55 2.7E-59 442.8 49.3 396 3-419 8-407 (415)
3 3ef6_A Toluene 1,2-dioxygenase 100.0 5.3E-55 1.8E-59 443.0 43.5 394 1-421 1-397 (410)
4 3fg2_P Putative rubredoxin red 100.0 5.9E-54 2E-58 434.8 47.7 392 5-419 2-396 (404)
5 1q1r_A Putidaredoxin reductase 100.0 1.6E-53 5.6E-58 434.6 41.7 390 1-410 1-397 (431)
6 3oc4_A Oxidoreductase, pyridin 100.0 3.1E-54 1.1E-58 443.1 34.8 400 5-425 3-427 (452)
7 3iwa_A FAD-dependent pyridine 100.0 5.6E-54 1.9E-58 443.6 33.4 411 4-429 3-446 (472)
8 3kd9_A Coenzyme A disulfide re 100.0 7E-54 2.4E-58 440.2 33.7 404 3-429 2-429 (449)
9 3klj_A NAD(FAD)-dependent dehy 100.0 7E-54 2.4E-58 430.2 32.8 362 4-412 9-375 (385)
10 4b1b_A TRXR, thioredoxin reduc 100.0 9.6E-56 3.3E-60 459.2 16.2 416 4-449 42-540 (542)
11 2gqw_A Ferredoxin reductase; f 100.0 3.4E-52 1.2E-56 422.0 41.9 384 4-417 7-394 (408)
12 2bc0_A NADH oxidase; flavoprot 100.0 2.6E-53 9E-58 440.3 34.5 406 4-426 35-478 (490)
13 2cdu_A NADPH oxidase; flavoenz 100.0 2.8E-53 9.6E-58 436.0 34.4 403 5-426 1-433 (452)
14 3ntd_A FAD-dependent pyridine 100.0 1.1E-52 3.7E-57 443.9 36.0 403 5-428 2-452 (565)
15 3ics_A Coenzyme A-disulfide re 100.0 6.8E-52 2.3E-56 439.4 37.6 403 4-428 36-468 (588)
16 1nhp_A NADH peroxidase; oxidor 100.0 9.2E-52 3.1E-56 424.2 32.8 402 5-426 1-432 (447)
17 3cgb_A Pyridine nucleotide-dis 100.0 3.1E-50 1.1E-54 416.2 38.0 402 5-426 37-469 (480)
18 3qfa_A Thioredoxin reductase 1 100.0 4.7E-52 1.6E-56 433.3 24.0 416 2-446 30-519 (519)
19 2wpf_A Trypanothione reductase 100.0 2.4E-51 8.2E-56 425.5 21.6 411 1-444 4-490 (495)
20 1xhc_A NADH oxidase /nitrite r 100.0 2.8E-49 9.7E-54 394.7 33.8 344 5-394 9-354 (367)
21 2v3a_A Rubredoxin reductase; a 100.0 5.1E-49 1.7E-53 396.0 35.6 369 1-399 1-375 (384)
22 2hqm_A GR, grase, glutathione 100.0 1.4E-49 4.8E-54 411.2 30.5 398 2-429 9-470 (479)
23 1fec_A Trypanothione reductase 100.0 4.8E-51 1.6E-55 423.0 18.7 406 3-444 2-486 (490)
24 2r9z_A Glutathione amide reduc 100.0 3.3E-49 1.1E-53 406.5 30.2 406 1-441 1-459 (463)
25 3dgh_A TRXR-1, thioredoxin red 100.0 1.4E-50 4.8E-55 419.3 19.4 405 3-437 8-482 (483)
26 1ges_A Glutathione reductase; 100.0 5.3E-49 1.8E-53 403.6 29.9 395 1-429 1-449 (450)
27 3dk9_A Grase, GR, glutathione 100.0 7.6E-50 2.6E-54 413.4 23.3 396 3-429 19-477 (478)
28 3dgz_A Thioredoxin reductase 2 100.0 2.9E-50 9.8E-55 417.4 20.1 409 4-442 6-487 (488)
29 1zmd_A Dihydrolipoyl dehydroge 100.0 5.5E-49 1.9E-53 406.6 28.8 397 4-428 6-461 (474)
30 1m6i_A Programmed cell death p 100.0 2E-48 6.9E-53 403.4 33.0 405 1-415 8-484 (493)
31 1ojt_A Surface protein; redox- 100.0 2.4E-49 8.4E-54 409.8 26.0 398 1-429 3-466 (482)
32 2qae_A Lipoamide, dihydrolipoy 100.0 9.5E-49 3.3E-53 404.1 29.6 395 4-428 2-456 (468)
33 1mo9_A ORF3; nucleotide bindin 100.0 3E-48 1E-52 405.2 32.8 399 1-429 40-513 (523)
34 1xdi_A RV3303C-LPDA; reductase 100.0 5.1E-49 1.7E-53 409.1 26.4 396 4-429 2-460 (499)
35 3l8k_A Dihydrolipoyl dehydroge 100.0 3.7E-49 1.3E-53 406.7 24.5 398 1-428 1-452 (466)
36 1zk7_A HGII, reductase, mercur 100.0 3.5E-49 1.2E-53 407.2 24.0 397 1-429 1-451 (467)
37 3lad_A Dihydrolipoamide dehydr 100.0 1E-49 3.6E-54 412.2 19.5 397 3-429 2-460 (476)
38 1onf_A GR, grase, glutathione 100.0 2.1E-48 7.3E-53 404.2 29.4 402 5-430 3-496 (500)
39 3urh_A Dihydrolipoyl dehydroge 100.0 2E-48 6.9E-53 404.0 29.1 399 2-429 23-480 (491)
40 2a8x_A Dihydrolipoyl dehydroge 100.0 1.9E-48 6.5E-53 401.4 27.5 392 3-428 2-452 (464)
41 2eq6_A Pyruvate dehydrogenase 100.0 1.4E-48 4.7E-53 402.1 25.3 392 4-429 6-450 (464)
42 4dna_A Probable glutathione re 100.0 6.2E-48 2.1E-52 397.4 29.4 396 1-430 1-450 (463)
43 1dxl_A Dihydrolipoamide dehydr 100.0 3.1E-48 1E-52 400.7 26.5 395 2-428 4-458 (470)
44 1ebd_A E3BD, dihydrolipoamide 100.0 1.2E-47 4.3E-52 394.3 30.5 393 4-427 3-448 (455)
45 3o0h_A Glutathione reductase; 100.0 3.8E-48 1.3E-52 401.1 24.3 390 4-430 26-470 (484)
46 1v59_A Dihydrolipoamide dehydr 100.0 6E-48 2E-52 399.3 24.8 400 1-428 2-466 (478)
47 2x8g_A Thioredoxin glutathione 100.0 1.3E-47 4.6E-52 407.1 26.3 415 3-446 106-598 (598)
48 3ic9_A Dihydrolipoamide dehydr 100.0 1.2E-48 3.9E-53 405.3 14.5 393 1-429 4-462 (492)
49 2yqu_A 2-oxoglutarate dehydrog 100.0 1.5E-46 5.1E-51 386.3 24.3 392 5-428 2-443 (455)
50 1lvl_A Dihydrolipoamide dehydr 100.0 5.6E-46 1.9E-50 382.1 24.3 389 4-428 5-446 (458)
51 4gcm_A TRXR, thioredoxin reduc 100.0 3.6E-40 1.2E-44 322.0 26.0 294 1-329 2-302 (312)
52 4g6h_A Rotenone-insensitive NA 100.0 5.6E-40 1.9E-44 339.8 21.0 296 4-330 42-398 (502)
53 4a5l_A Thioredoxin reductase; 100.0 1.1E-39 3.8E-44 318.5 20.1 299 1-329 1-308 (314)
54 2zbw_A Thioredoxin reductase; 100.0 6.9E-38 2.4E-42 308.7 23.4 301 1-331 2-315 (335)
55 1trb_A Thioredoxin reductase; 100.0 6.2E-38 2.1E-42 307.0 22.0 297 1-330 2-311 (320)
56 3ab1_A Ferredoxin--NADP reduct 100.0 9.3E-38 3.2E-42 311.1 23.6 302 1-331 11-326 (360)
57 1fl2_A Alkyl hydroperoxide red 100.0 1.5E-37 5.2E-42 302.9 23.7 290 4-330 1-302 (310)
58 2q7v_A Thioredoxin reductase; 100.0 3.2E-37 1.1E-41 302.8 25.3 291 3-330 7-309 (325)
59 3cty_A Thioredoxin reductase; 100.0 3.3E-37 1.1E-41 301.9 23.5 292 1-330 13-313 (319)
60 2q0l_A TRXR, thioredoxin reduc 100.0 3.6E-37 1.2E-41 300.4 22.0 286 5-330 2-306 (311)
61 4fk1_A Putative thioredoxin re 100.0 1.1E-37 3.9E-42 303.2 17.2 284 1-329 3-296 (304)
62 3f8d_A Thioredoxin reductase ( 100.0 9.6E-37 3.3E-41 298.4 23.6 291 4-330 15-314 (323)
63 3r9u_A Thioredoxin reductase; 100.0 1E-36 3.5E-41 297.3 23.1 291 3-330 3-309 (315)
64 3itj_A Thioredoxin reductase 1 100.0 2.8E-37 9.5E-42 304.4 18.5 294 4-330 22-332 (338)
65 3lzw_A Ferredoxin--NADP reduct 100.0 6.7E-37 2.3E-41 300.9 18.6 292 4-331 7-313 (332)
66 3hyw_A Sulfide-quinone reducta 100.0 3E-38 1E-42 321.9 8.9 307 1-332 1-332 (430)
67 3fbs_A Oxidoreductase; structu 100.0 1.3E-36 4.5E-41 294.0 19.1 281 1-330 1-289 (297)
68 3vrd_B FCCB subunit, flavocyto 100.0 2.9E-36 9.9E-41 304.8 21.4 302 4-330 2-321 (401)
69 1hyu_A AHPF, alkyl hydroperoxi 100.0 9.5E-36 3.3E-40 310.2 25.0 291 3-330 211-513 (521)
70 3sx6_A Sulfide-quinone reducta 100.0 3.3E-36 1.1E-40 307.6 20.9 310 1-332 1-343 (437)
71 1vdc_A NTR, NADPH dependent th 100.0 4.6E-36 1.6E-40 295.4 20.6 302 3-330 7-320 (333)
72 2a87_A TRXR, TR, thioredoxin r 100.0 6.3E-36 2.2E-40 294.9 20.3 289 2-330 12-313 (335)
73 3h8l_A NADH oxidase; membrane 100.0 2.2E-35 7.4E-40 299.1 24.2 290 5-331 2-334 (409)
74 3d1c_A Flavin-containing putat 100.0 2.8E-34 9.6E-39 286.7 21.7 303 3-332 3-338 (369)
75 4a9w_A Monooxygenase; baeyer-v 100.0 2.7E-34 9.3E-39 284.8 18.3 299 3-332 2-351 (357)
76 3h28_A Sulfide-quinone reducta 100.0 2.1E-34 7.1E-39 293.8 15.7 302 5-332 3-332 (430)
77 2vdc_G Glutamate synthase [NAD 100.0 4.5E-33 1.5E-37 284.5 14.4 282 4-330 122-441 (456)
78 1gte_A Dihydropyrimidine dehyd 100.0 3.1E-32 1.1E-36 303.9 19.1 311 4-356 187-539 (1025)
79 2gag_A Heterotetrameric sarcos 100.0 3.3E-32 1.1E-36 301.6 18.0 283 4-331 128-442 (965)
80 1cjc_A Protein (adrenodoxin re 100.0 1.7E-32 5.9E-37 280.8 12.5 293 3-331 5-393 (460)
81 2xve_A Flavin-containing monoo 100.0 1.3E-30 4.4E-35 267.8 24.0 285 5-332 3-340 (464)
82 1lqt_A FPRA; NADP+ derivative, 100.0 1.5E-32 5.3E-37 280.9 9.4 288 3-331 2-385 (456)
83 3s5w_A L-ornithine 5-monooxyge 100.0 1.2E-30 4E-35 268.7 17.8 310 4-328 30-444 (463)
84 1o94_A Tmadh, trimethylamine d 100.0 3.5E-31 1.2E-35 286.0 8.3 297 4-357 389-720 (729)
85 2gv8_A Monooxygenase; FMO, FAD 100.0 1.9E-29 6.4E-34 258.4 18.7 287 2-332 4-361 (447)
86 1y56_A Hypothetical protein PH 100.0 4.2E-30 1.4E-34 266.0 13.3 256 4-332 108-376 (493)
87 3k30_A Histamine dehydrogenase 100.0 1.8E-30 6E-35 279.4 7.0 271 3-332 390-674 (690)
88 1ps9_A 2,4-dienoyl-COA reducta 100.0 1.4E-28 4.9E-33 263.8 13.1 259 4-328 373-671 (671)
89 3gwf_A Cyclohexanone monooxyge 99.9 1.3E-27 4.3E-32 249.3 16.4 297 4-329 8-453 (540)
90 4ap3_A Steroid monooxygenase; 99.9 1.6E-25 5.5E-30 233.8 17.4 182 4-197 21-226 (549)
91 3uox_A Otemo; baeyer-villiger 99.9 1E-25 3.5E-30 235.1 15.5 306 4-329 9-462 (545)
92 1w4x_A Phenylacetone monooxyge 99.9 2.2E-24 7.5E-29 225.8 17.4 297 4-330 16-463 (542)
93 2ywl_A Thioredoxin reductase r 99.9 1.1E-21 3.7E-26 175.2 16.0 154 164-331 3-169 (180)
94 4b63_A L-ornithine N5 monooxyg 99.8 9.1E-19 3.1E-23 181.2 20.3 289 4-298 39-458 (501)
95 2e5v_A L-aspartate oxidase; ar 99.7 2.9E-19 9.9E-24 183.5 2.2 222 80-330 128-370 (472)
96 2cul_A Glucose-inhibited divis 99.6 6.4E-15 2.2E-19 136.7 13.0 155 163-330 4-229 (232)
97 3fpz_A Thiazole biosynthetic e 99.6 5.6E-18 1.9E-22 165.8 -8.2 252 4-329 65-321 (326)
98 2gqf_A Hypothetical protein HI 99.6 2.1E-16 7.2E-21 158.7 1.6 121 1-126 1-169 (401)
99 3k7m_X 6-hydroxy-L-nicotine ox 99.3 3.6E-12 1.2E-16 129.2 9.8 94 203-299 203-307 (431)
100 1rp0_A ARA6, thiazole biosynth 99.3 1.2E-11 4.2E-16 118.1 10.9 165 163-331 40-273 (284)
101 2ywl_A Thioredoxin reductase r 99.2 4.2E-11 1.4E-15 106.1 9.2 114 5-133 2-118 (180)
102 3dme_A Conserved exported prot 99.1 1.3E-09 4.5E-14 107.5 16.4 59 203-262 149-209 (369)
103 3ces_A MNMG, tRNA uridine 5-ca 99.1 1.4E-10 4.9E-15 121.1 8.4 158 3-192 27-220 (651)
104 1kf6_A Fumarate reductase flav 99.0 2.8E-10 9.7E-15 119.8 8.0 35 4-41 5-41 (602)
105 2bry_A NEDD9 interacting prote 99.0 1E-10 3.6E-15 120.6 4.3 150 113-265 37-233 (497)
106 2cul_A Glucose-inhibited divis 99.0 1.1E-09 3.6E-14 101.3 7.8 116 3-128 2-128 (232)
107 3v76_A Flavoprotein; structura 98.9 1.1E-09 3.9E-14 110.0 8.2 119 2-125 25-187 (417)
108 2zxi_A TRNA uridine 5-carboxym 98.9 2.1E-09 7.3E-14 111.9 7.2 158 4-193 27-220 (637)
109 3alj_A 2-methyl-3-hydroxypyrid 98.9 3.9E-09 1.3E-13 105.0 8.6 123 3-129 10-164 (379)
110 3cp8_A TRNA uridine 5-carboxym 98.8 2.7E-09 9.1E-14 111.5 7.1 159 3-192 20-214 (641)
111 3oz2_A Digeranylgeranylglycero 98.8 3.1E-09 1.1E-13 105.8 6.4 122 2-126 2-163 (397)
112 3dje_A Fructosyl amine: oxygen 98.8 8.9E-08 3E-12 97.0 17.1 59 203-262 160-221 (438)
113 4dgk_A Phytoene dehydrogenase; 98.8 2.5E-09 8.7E-14 110.4 5.3 59 203-262 220-278 (501)
114 3nix_A Flavoprotein/dehydrogen 98.8 1E-08 3.5E-13 103.2 9.1 127 1-130 1-171 (421)
115 3pl8_A Pyranose 2-oxidase; sub 98.8 2E-11 6.7E-16 129.1 -11.9 54 215-268 271-330 (623)
116 3i3l_A Alkylhalidase CMLS; fla 98.8 1.7E-08 5.8E-13 105.9 9.9 124 1-127 20-190 (591)
117 2x3n_A Probable FAD-dependent 98.7 1.5E-08 5.3E-13 101.3 8.8 122 4-128 6-169 (399)
118 3nlc_A Uncharacterized protein 98.7 1.3E-08 4.5E-13 105.4 8.1 120 4-126 107-278 (549)
119 1s3e_A Amine oxidase [flavin-c 98.7 3.3E-08 1.1E-12 102.6 10.8 38 1-41 1-38 (520)
120 1rp0_A ARA6, thiazole biosynth 98.7 2.5E-08 8.5E-13 95.0 9.1 120 4-127 39-193 (284)
121 3cgv_A Geranylgeranyl reductas 98.7 7.8E-09 2.7E-13 103.1 5.8 123 2-127 2-164 (397)
122 1y56_B Sarcosine oxidase; dehy 98.7 2.8E-07 9.4E-12 91.4 16.6 58 203-262 148-205 (382)
123 3axb_A Putative oxidoreductase 98.7 7.7E-08 2.6E-12 97.7 12.0 58 204-262 181-254 (448)
124 2bry_A NEDD9 interacting prote 98.7 2.1E-08 7.2E-13 103.3 7.6 119 4-127 92-232 (497)
125 2gag_B Heterotetrameric sarcos 98.7 2.6E-07 9E-12 92.3 15.5 57 204-262 174-230 (405)
126 3pvc_A TRNA 5-methylaminomethy 98.7 4.2E-07 1.4E-11 97.4 17.7 58 203-262 411-469 (689)
127 2i0z_A NAD(FAD)-utilizing dehy 98.7 2.5E-08 8.5E-13 101.4 7.7 119 4-125 26-191 (447)
128 3nlc_A Uncharacterized protein 98.7 9.2E-08 3.2E-12 99.0 11.9 102 162-264 107-279 (549)
129 2xdo_A TETX2 protein; tetracyc 98.7 1.2E-07 4.2E-12 94.7 12.2 121 2-127 24-184 (398)
130 3fmw_A Oxygenase; mithramycin, 98.6 3.7E-08 1.3E-12 103.0 8.3 121 4-127 49-209 (570)
131 2gf3_A MSOX, monomeric sarcosi 98.6 7E-07 2.4E-11 88.6 17.1 73 185-263 134-206 (389)
132 2e4g_A Tryptophan halogenase; 98.6 1.6E-07 5.5E-12 98.0 13.0 60 204-264 194-254 (550)
133 3e1t_A Halogenase; flavoprotei 98.6 6.9E-08 2.3E-12 99.9 10.1 123 4-129 7-176 (512)
134 2vou_A 2,6-dihydroxypyridine h 98.6 5E-08 1.7E-12 97.6 8.5 121 3-126 4-154 (397)
135 3ihg_A RDME; flavoenzyme, anth 98.6 6.2E-08 2.1E-12 100.9 9.5 38 1-41 1-39 (535)
136 4a9w_A Monooxygenase; baeyer-v 98.6 2.3E-07 7.7E-12 90.8 12.8 96 163-260 4-130 (357)
137 3atr_A Conserved archaeal prot 98.6 1.3E-08 4.4E-13 103.8 3.7 125 3-130 5-167 (453)
138 3ps9_A TRNA 5-methylaminomethy 98.6 9.6E-08 3.3E-12 102.3 10.5 45 81-125 427-473 (676)
139 1ryi_A Glycine oxidase; flavop 98.6 7.6E-08 2.6E-12 95.4 9.0 35 4-41 17-51 (382)
140 3nrn_A Uncharacterized protein 98.6 1E-07 3.5E-12 96.0 9.4 61 203-267 188-248 (421)
141 1yvv_A Amine oxidase, flavin-c 98.6 1.7E-07 5.7E-12 91.2 10.4 34 5-41 3-36 (336)
142 1y0p_A Fumarate reductase flav 98.6 1.2E-07 4.1E-12 99.4 9.7 35 4-41 126-160 (571)
143 2qa1_A PGAE, polyketide oxygen 98.6 1.2E-07 4E-12 97.8 8.9 123 2-127 9-167 (500)
144 3qj4_A Renalase; FAD/NAD(P)-bi 98.5 1.2E-07 4.2E-12 92.6 8.4 116 5-123 2-163 (342)
145 1qo8_A Flavocytochrome C3 fuma 98.5 1.1E-07 3.7E-12 99.6 8.2 35 4-41 121-155 (566)
146 3lzw_A Ferredoxin--NADP reduct 98.5 2.9E-07 9.8E-12 89.2 10.0 100 163-264 8-128 (332)
147 2qa2_A CABE, polyketide oxygen 98.5 4E-07 1.4E-11 93.7 11.0 121 4-127 12-168 (499)
148 2oln_A NIKD protein; flavoprot 98.5 2.2E-07 7.4E-12 92.8 8.7 38 1-41 1-38 (397)
149 3rp8_A Flavoprotein monooxygen 98.5 1.7E-07 5.8E-12 93.9 7.8 122 3-127 22-183 (407)
150 3nyc_A D-arginine dehydrogenas 98.5 3.4E-07 1.2E-11 90.5 9.8 57 203-262 153-209 (381)
151 2uzz_A N-methyl-L-tryptophan o 98.5 3.7E-07 1.3E-11 90.1 10.0 34 5-41 3-36 (372)
152 2zbw_A Thioredoxin reductase; 98.5 8.3E-07 2.8E-11 86.2 12.1 97 163-261 6-120 (335)
153 3itj_A Thioredoxin reductase 1 98.5 3.9E-07 1.3E-11 88.4 9.5 101 162-265 22-145 (338)
154 3ab1_A Ferredoxin--NADP reduct 98.5 1.1E-06 3.8E-11 86.3 12.6 100 162-262 14-131 (360)
155 2yqu_A 2-oxoglutarate dehydrog 98.5 2.4E-07 8.4E-12 94.3 8.1 99 4-128 167-267 (455)
156 3f8d_A Thioredoxin reductase ( 98.5 7.4E-07 2.5E-11 85.8 11.1 100 163-265 16-128 (323)
157 1k0i_A P-hydroxybenzoate hydro 98.5 2.6E-07 9E-12 92.0 8.0 121 4-127 2-165 (394)
158 3c96_A Flavin-containing monoo 98.4 1.9E-07 6.4E-12 93.8 6.8 39 1-41 1-39 (410)
159 3v76_A Flavoprotein; structura 98.4 8.1E-07 2.8E-11 89.2 11.4 99 162-263 27-188 (417)
160 3sx6_A Sulfide-quinone reducta 98.4 2.5E-07 8.7E-12 93.6 7.8 99 163-266 5-116 (437)
161 3klj_A NAD(FAD)-dependent dehy 98.4 7.7E-07 2.6E-11 88.5 11.1 100 162-265 9-119 (385)
162 3ka7_A Oxidoreductase; structu 98.4 1.7E-07 5.8E-12 94.4 6.2 63 203-267 195-257 (425)
163 3gwf_A Cyclohexanone monooxyge 98.4 1.2E-06 4.1E-11 91.0 12.5 102 163-264 9-151 (540)
164 4ap3_A Steroid monooxygenase; 98.4 9.9E-07 3.4E-11 91.8 11.8 102 163-264 22-163 (549)
165 1fl2_A Alkyl hydroperoxide red 98.4 1E-06 3.4E-11 84.6 10.9 101 164-264 3-117 (310)
166 2gmh_A Electron transfer flavo 98.4 4.7E-07 1.6E-11 95.1 9.2 35 4-41 35-75 (584)
167 3alj_A 2-methyl-3-hydroxypyrid 98.4 1.5E-06 5.1E-11 86.2 12.1 99 162-265 11-163 (379)
168 3fbs_A Oxidoreductase; structu 98.4 1.6E-06 5.4E-11 82.4 11.8 100 163-265 3-115 (297)
169 2aqj_A Tryptophan halogenase, 98.4 3.1E-07 1.1E-11 95.6 6.9 38 1-41 2-42 (538)
170 3kkj_A Amine oxidase, flavin-c 98.4 2.4E-07 8.1E-12 86.4 5.4 36 1-41 1-36 (336)
171 2q0l_A TRXR, thioredoxin reduc 98.4 1.8E-06 6E-11 82.9 11.6 99 164-265 3-117 (311)
172 1chu_A Protein (L-aspartate ox 98.4 1.2E-06 3.9E-11 91.1 10.8 34 4-41 8-41 (540)
173 3hyw_A Sulfide-quinone reducta 98.4 4.9E-07 1.7E-11 91.3 7.7 96 163-263 3-110 (430)
174 4at0_A 3-ketosteroid-delta4-5a 98.4 1.6E-06 5.3E-11 89.6 11.6 36 3-41 40-75 (510)
175 2i0z_A NAD(FAD)-utilizing dehy 98.4 2.7E-06 9.1E-11 86.4 13.0 100 163-263 27-192 (447)
176 2xve_A Flavin-containing monoo 98.4 2.4E-06 8.1E-11 87.1 12.6 103 163-265 3-171 (464)
177 2gqf_A Hypothetical protein HI 98.4 2.9E-06 9.9E-11 84.7 12.8 100 163-264 5-170 (401)
178 3oz2_A Digeranylgeranylglycero 98.3 6.2E-06 2.1E-10 81.6 15.1 98 164-262 6-162 (397)
179 4fk1_A Putative thioredoxin re 98.3 2.7E-06 9.4E-11 81.5 12.0 100 164-265 8-120 (304)
180 2gqw_A Ferredoxin reductase; f 98.3 8.7E-07 3E-11 88.8 8.6 97 4-127 145-241 (408)
181 2q7v_A Thioredoxin reductase; 98.3 2.1E-06 7.1E-11 83.1 10.9 101 163-264 9-125 (325)
182 3d1c_A Flavin-containing putat 98.3 4.9E-06 1.7E-10 81.8 13.7 98 163-263 5-144 (369)
183 2qcu_A Aerobic glycerol-3-phos 98.3 2.1E-06 7.1E-11 88.5 11.4 36 3-41 2-37 (501)
184 1nhp_A NADH peroxidase; oxidor 98.3 9.7E-07 3.3E-11 89.6 8.8 100 3-128 148-249 (447)
185 3vrd_B FCCB subunit, flavocyto 98.3 1.2E-06 4.1E-11 87.5 9.3 100 162-266 2-112 (401)
186 1d4d_A Flavocytochrome C fumar 98.3 1.3E-06 4.3E-11 91.6 9.5 35 4-41 126-160 (572)
187 4hb9_A Similarities with proba 98.3 9.1E-07 3.1E-11 88.3 8.1 34 5-41 2-35 (412)
188 3h8l_A NADH oxidase; membrane 98.3 4.3E-07 1.5E-11 91.1 5.6 98 163-265 2-116 (409)
189 3uox_A Otemo; baeyer-villiger 98.3 1.8E-06 6.1E-11 89.8 10.4 102 163-264 10-151 (545)
190 1lvl_A Dihydrolipoamide dehydr 98.3 8.8E-07 3E-11 90.2 7.8 97 4-128 171-271 (458)
191 2v3a_A Rubredoxin reductase; a 98.3 9.3E-07 3.2E-11 87.9 7.8 99 4-127 145-245 (384)
192 1pj5_A N,N-dimethylglycine oxi 98.3 9.6E-07 3.3E-11 96.8 8.5 38 1-41 1-39 (830)
193 3jsk_A Cypbp37 protein; octame 98.3 6.6E-07 2.2E-11 86.6 6.3 35 4-41 79-115 (344)
194 2x3n_A Probable FAD-dependent 98.3 4E-06 1.4E-10 83.6 12.3 101 163-264 7-168 (399)
195 1hyu_A AHPF, alkyl hydroperoxi 98.3 4.4E-06 1.5E-10 86.5 12.9 104 161-264 211-328 (521)
196 2dkh_A 3-hydroxybenzoate hydro 98.3 1.1E-06 3.7E-11 93.4 8.4 36 3-41 31-67 (639)
197 1ges_A Glutathione reductase; 98.3 1.4E-06 4.9E-11 88.4 8.9 98 4-127 167-267 (450)
198 2eq6_A Pyruvate dehydrogenase 98.3 1.3E-06 4.6E-11 89.0 8.7 99 4-128 169-274 (464)
199 3c4n_A Uncharacterized protein 98.3 4.3E-07 1.5E-11 91.0 4.9 35 4-41 36-72 (405)
200 1vdc_A NTR, NADPH dependent th 98.3 1.8E-06 6.2E-11 83.7 9.1 99 163-265 9-127 (333)
201 3i6d_A Protoporphyrinogen oxid 98.3 2.9E-06 9.9E-11 86.3 11.0 52 205-260 236-287 (470)
202 2h88_A Succinate dehydrogenase 98.3 1.3E-06 4.3E-11 92.1 8.4 35 4-41 18-52 (621)
203 1xhc_A NADH oxidase /nitrite r 98.3 7.3E-07 2.5E-11 88.1 6.2 99 161-265 7-116 (367)
204 3h28_A Sulfide-quinone reducta 98.3 4.3E-07 1.5E-11 91.8 4.6 98 163-265 3-112 (430)
205 2pyx_A Tryptophan halogenase; 98.3 2.4E-06 8.1E-11 88.6 10.0 45 82-127 186-235 (526)
206 3ef6_A Toluene 1,2-dioxygenase 98.3 1.6E-06 5.3E-11 87.0 8.4 99 4-127 143-243 (410)
207 2r9z_A Glutathione amide reduc 98.3 1.6E-06 5.5E-11 88.4 8.6 98 4-127 166-266 (463)
208 3fg2_P Putative rubredoxin red 98.3 1.4E-06 4.9E-11 87.1 7.9 97 163-264 2-112 (404)
209 1ebd_A E3BD, dihydrolipoamide 98.2 1.5E-06 5E-11 88.5 8.0 99 4-128 170-273 (455)
210 3lxd_A FAD-dependent pyridine 98.2 2.2E-06 7.5E-11 86.1 8.8 99 4-127 152-253 (415)
211 1q1r_A Putidaredoxin reductase 98.2 2.3E-06 7.8E-11 86.4 8.9 100 162-265 4-117 (431)
212 3nix_A Flavoprotein/dehydrogen 98.2 4.3E-06 1.5E-10 83.9 10.7 100 163-262 6-166 (421)
213 3da1_A Glycerol-3-phosphate de 98.2 3E-06 1E-10 88.4 9.6 36 3-41 17-52 (561)
214 2gv8_A Monooxygenase; FMO, FAD 98.2 5E-06 1.7E-10 84.3 11.0 102 162-265 6-182 (447)
215 4eqs_A Coenzyme A disulfide re 98.2 3.6E-06 1.2E-10 85.1 9.9 96 4-127 147-242 (437)
216 3cty_A Thioredoxin reductase; 98.2 7.1E-06 2.4E-10 79.0 11.6 98 163-264 17-128 (319)
217 1qo8_A Flavocytochrome C3 fuma 98.2 4.5E-06 1.5E-10 87.3 10.6 144 118-264 77-314 (566)
218 1trb_A Thioredoxin reductase; 98.2 4.7E-06 1.6E-10 80.2 9.9 99 163-265 6-119 (320)
219 1onf_A GR, grase, glutathione 98.2 3.9E-06 1.3E-10 86.4 9.7 98 4-127 176-277 (500)
220 2bs2_A Quinol-fumarate reducta 98.2 2.9E-06 9.8E-11 90.0 8.8 35 4-41 5-39 (660)
221 2hqm_A GR, grase, glutathione 98.2 3.2E-06 1.1E-10 86.6 8.9 98 4-127 185-287 (479)
222 3ics_A Coenzyme A-disulfide re 98.2 3.1E-06 1.1E-10 89.0 9.0 98 4-127 187-284 (588)
223 2vou_A 2,6-dihydroxypyridine h 98.2 8.3E-06 2.8E-10 81.3 11.6 101 162-264 5-155 (397)
224 2wdq_A Succinate dehydrogenase 98.2 5.4E-06 1.8E-10 87.0 10.5 35 4-41 7-41 (588)
225 2r0c_A REBC; flavin adenine di 98.2 3.7E-06 1.3E-10 87.6 9.0 35 4-41 26-60 (549)
226 2a87_A TRXR, TR, thioredoxin r 98.2 4.7E-06 1.6E-10 81.0 9.2 100 162-265 14-129 (335)
227 1y0p_A Fumarate reductase flav 98.2 1.2E-05 4.1E-10 84.2 12.9 105 163-267 127-323 (571)
228 2weu_A Tryptophan 5-halogenase 98.2 3.7E-06 1.3E-10 86.8 8.8 46 81-127 183-232 (511)
229 1v59_A Dihydrolipoamide dehydr 98.1 3.6E-06 1.2E-10 86.2 8.4 99 4-128 183-290 (478)
230 1yvv_A Amine oxidase, flavin-c 98.1 1.9E-05 6.6E-10 76.4 13.3 97 163-262 3-162 (336)
231 3r9u_A Thioredoxin reductase; 98.1 7.1E-06 2.4E-10 78.6 9.9 99 162-265 4-121 (315)
232 2wpf_A Trypanothione reductase 98.1 4.4E-06 1.5E-10 85.9 9.0 98 4-127 191-294 (495)
233 1fec_A Trypanothione reductase 98.1 4.6E-06 1.6E-10 85.7 8.9 98 4-127 187-290 (490)
234 2bc0_A NADH oxidase; flavoprot 98.1 5.9E-06 2E-10 84.9 9.6 99 4-128 194-294 (490)
235 1zmd_A Dihydrolipoyl dehydroge 98.1 4.8E-06 1.6E-10 85.2 8.8 99 4-127 178-284 (474)
236 3oc4_A Oxidoreductase, pyridin 98.1 4.4E-06 1.5E-10 84.9 8.4 101 163-265 3-118 (452)
237 3ces_A MNMG, tRNA uridine 5-ca 98.1 1.9E-05 6.7E-10 82.5 13.3 100 163-264 29-183 (651)
238 1mo9_A ORF3; nucleotide bindin 98.1 5E-06 1.7E-10 86.1 8.9 97 5-127 215-318 (523)
239 4a5l_A Thioredoxin reductase; 98.1 1E-05 3.5E-10 77.6 10.6 99 164-265 6-124 (314)
240 2a8x_A Dihydrolipoyl dehydroge 98.1 4.6E-06 1.6E-10 85.0 8.5 98 4-127 171-273 (464)
241 1ojt_A Surface protein; redox- 98.1 2.9E-06 9.9E-11 87.0 7.0 98 4-127 185-288 (482)
242 1xdi_A RV3303C-LPDA; reductase 98.1 6.9E-06 2.4E-10 84.5 9.6 98 4-127 182-281 (499)
243 3s5w_A L-ornithine 5-monooxyge 98.1 5.1E-06 1.8E-10 84.6 8.3 102 164-265 32-195 (463)
244 3kd9_A Coenzyme A disulfide re 98.1 6.3E-06 2.2E-10 83.6 9.0 100 162-265 3-117 (449)
245 1k0i_A P-hydroxybenzoate hydro 98.1 1.2E-05 4.1E-10 79.9 10.8 101 163-264 3-165 (394)
246 2gjc_A Thiazole biosynthetic e 98.1 6.5E-06 2.2E-10 79.1 8.5 35 4-41 65-101 (326)
247 4b1b_A TRXR, thioredoxin reduc 98.1 5.8E-06 2E-10 85.6 8.7 98 4-128 223-322 (542)
248 2zxi_A TRNA uridine 5-carboxym 98.1 2.3E-05 8E-10 81.6 13.1 101 163-265 28-183 (637)
249 3iwa_A FAD-dependent pyridine 98.1 6.2E-06 2.1E-10 84.3 8.5 102 162-265 3-128 (472)
250 2qae_A Lipoamide, dihydrolipoy 98.1 7.3E-06 2.5E-10 83.6 9.0 98 4-127 174-278 (468)
251 1ryi_A Glycine oxidase; flavop 98.1 1.5E-05 5.1E-10 78.7 11.0 56 205-263 165-220 (382)
252 3cgb_A Pyridine nucleotide-dis 98.1 5.8E-06 2E-10 84.7 8.2 97 4-127 186-284 (480)
253 1w4x_A Phenylacetone monooxyge 98.1 2.2E-05 7.4E-10 81.7 12.6 98 163-260 17-152 (542)
254 2cdu_A NADPH oxidase; flavoenz 98.1 7.5E-06 2.6E-10 83.2 8.9 100 4-128 149-250 (452)
255 1dxl_A Dihydrolipoamide dehydr 98.0 4.6E-06 1.6E-10 85.2 6.8 98 4-127 177-281 (470)
256 4gcm_A TRXR, thioredoxin reduc 98.0 2.6E-05 9E-10 74.7 11.6 98 164-265 8-119 (312)
257 3atr_A Conserved archaeal prot 98.0 2E-05 6.9E-10 80.0 11.3 101 163-264 7-164 (453)
258 3o0h_A Glutathione reductase; 98.0 1.1E-05 3.7E-10 82.8 9.1 99 4-128 191-291 (484)
259 3ntd_A FAD-dependent pyridine 98.0 1.1E-05 3.6E-10 84.5 8.8 98 4-127 151-269 (565)
260 3cgv_A Geranylgeranyl reductas 98.0 2.6E-05 9E-10 77.3 11.2 99 163-262 5-162 (397)
261 3cp8_A TRNA uridine 5-carboxym 98.0 4.7E-05 1.6E-09 79.6 13.2 101 163-265 22-177 (641)
262 2gmh_A Electron transfer flavo 98.0 5.7E-05 2E-09 79.1 13.7 102 163-264 36-219 (584)
263 3ic9_A Dihydrolipoamide dehydr 98.0 1.3E-05 4.5E-10 82.3 8.5 98 4-128 174-277 (492)
264 3gyx_A Adenylylsulfate reducta 98.0 1E-05 3.5E-10 85.7 7.6 35 4-41 22-62 (662)
265 2vdc_G Glutamate synthase [NAD 98.0 4E-06 1.4E-10 85.1 4.3 89 162-261 122-218 (456)
266 1zk7_A HGII, reductase, mercur 98.0 1.5E-05 5.2E-10 81.2 8.5 96 4-127 176-273 (467)
267 3i3l_A Alkylhalidase CMLS; fla 97.9 3.9E-05 1.4E-09 80.3 11.8 101 162-263 23-189 (591)
268 4hb9_A Similarities with proba 97.9 6E-05 2.1E-09 74.9 12.7 100 164-264 3-168 (412)
269 4dna_A Probable glutathione re 97.9 1.8E-05 6.1E-10 80.6 8.9 98 4-128 170-271 (463)
270 3qj4_A Renalase; FAD/NAD(P)-bi 97.9 4.2E-05 1.4E-09 74.4 11.0 94 164-259 3-162 (342)
271 1pn0_A Phenol 2-monooxygenase; 97.9 1.3E-05 4.4E-10 85.4 7.8 35 4-41 8-47 (665)
272 1d4d_A Flavocytochrome C fumar 97.9 6E-05 2.1E-09 78.8 12.8 106 162-267 126-323 (572)
273 4g6h_A Rotenone-insensitive NA 97.9 8.9E-06 3.1E-10 83.6 6.2 100 163-265 43-172 (502)
274 1m6i_A Programmed cell death p 97.9 1.7E-05 6E-10 81.4 8.3 102 4-127 180-284 (493)
275 2xdo_A TETX2 protein; tetracyc 97.9 5.6E-05 1.9E-09 75.2 11.8 101 162-264 26-184 (398)
276 3dgh_A TRXR-1, thioredoxin red 97.9 1.3E-05 4.5E-10 82.1 7.4 98 4-128 187-292 (483)
277 3lad_A Dihydrolipoamide dehydr 97.9 2.6E-05 9E-10 79.6 9.5 98 4-127 180-282 (476)
278 3e1t_A Halogenase; flavoprotei 97.9 6.4E-05 2.2E-09 77.5 12.3 101 163-264 8-174 (512)
279 3urh_A Dihydrolipoyl dehydroge 97.9 2.3E-05 8E-10 80.4 9.0 98 4-127 198-302 (491)
280 3rp8_A Flavoprotein monooxygen 97.9 5.3E-05 1.8E-09 75.6 11.2 100 162-265 23-184 (407)
281 2uzz_A N-methyl-L-tryptophan o 97.9 6.6E-05 2.3E-09 73.7 11.3 54 206-262 151-204 (372)
282 2gjc_A Thiazole biosynthetic e 97.9 0.00013 4.5E-09 70.0 12.9 165 162-329 65-321 (326)
283 3dk9_A Grase, GR, glutathione 97.9 2.3E-05 7.9E-10 80.1 8.2 98 4-127 187-295 (478)
284 3fmw_A Oxygenase; mithramycin, 97.9 4.9E-05 1.7E-09 79.4 10.6 100 163-264 50-209 (570)
285 3dgz_A Thioredoxin reductase 2 97.9 2.7E-05 9.2E-10 79.8 8.5 98 4-128 185-290 (488)
286 3ps9_A TRNA 5-methylaminomethy 97.8 0.00012 4.2E-09 78.1 13.7 54 207-262 420-473 (676)
287 3ihg_A RDME; flavoenzyme, anth 97.8 8.7E-05 3E-09 76.9 11.8 101 163-263 6-184 (535)
288 1c0p_A D-amino acid oxidase; a 97.8 1.7E-05 5.8E-10 77.9 5.4 37 1-40 3-39 (363)
289 2aqj_A Tryptophan halogenase, 97.8 0.00022 7.5E-09 74.0 14.0 56 208-264 169-224 (538)
290 3jsk_A Cypbp37 protein; octame 97.7 0.00022 7.4E-09 68.9 12.1 166 162-330 79-332 (344)
291 2bcg_G Secretory pathway GDP d 97.7 2.5E-05 8.5E-10 79.3 5.8 60 203-263 241-301 (453)
292 3l8k_A Dihydrolipoyl dehydroge 97.7 0.0001 3.4E-09 75.1 10.4 97 164-265 6-147 (466)
293 4gde_A UDP-galactopyranose mut 97.7 2E-05 6.7E-10 81.2 4.6 53 204-260 222-274 (513)
294 4at0_A 3-ketosteroid-delta4-5a 97.7 0.00022 7.6E-09 73.4 12.5 64 205-268 203-271 (510)
295 3qfa_A Thioredoxin reductase 1 97.7 6.8E-05 2.3E-09 77.4 8.7 97 5-128 211-318 (519)
296 1y56_A Hypothetical protein PH 97.7 4.2E-05 1.5E-09 78.5 6.7 100 163-265 109-222 (493)
297 2qa2_A CABE, polyketide oxygen 97.7 0.00026 9E-09 72.6 12.5 101 162-264 12-168 (499)
298 1v0j_A UDP-galactopyranose mut 97.7 3.5E-05 1.2E-09 76.9 5.5 38 1-41 4-42 (399)
299 2qa1_A PGAE, polyketide oxygen 97.6 0.0004 1.4E-08 71.2 13.3 101 162-264 11-167 (500)
300 3c96_A Flavin-containing monoo 97.6 0.00014 5E-09 72.5 9.6 101 162-265 4-172 (410)
301 2b9w_A Putative aminooxidase; 97.6 4.3E-05 1.5E-09 76.6 5.8 37 2-41 4-41 (424)
302 1cjc_A Protein (adrenodoxin re 97.6 1.6E-05 5.5E-10 80.8 2.5 90 162-262 6-106 (460)
303 2x8g_A Thioredoxin glutathione 97.6 0.00013 4.4E-09 76.8 9.4 97 4-127 286-397 (598)
304 3k30_A Histamine dehydrogenase 97.6 8.5E-05 2.9E-09 79.5 7.7 97 5-126 524-625 (690)
305 3nks_A Protoporphyrinogen oxid 97.6 4E-05 1.4E-09 78.2 4.8 55 204-260 234-288 (477)
306 3c4n_A Uncharacterized protein 97.6 9.9E-05 3.4E-09 73.7 7.5 54 206-262 174-236 (405)
307 1gte_A Dihydropyrimidine dehyd 97.6 2.9E-05 9.8E-10 86.8 3.8 94 162-264 187-290 (1025)
308 3ihm_A Styrene monooxygenase A 97.6 4.4E-05 1.5E-09 76.9 4.7 33 5-40 23-55 (430)
309 1pj5_A N,N-dimethylglycine oxi 97.6 0.00033 1.1E-08 76.6 12.0 55 206-262 153-207 (830)
310 2gag_A Heterotetrameric sarcos 97.5 0.0002 6.7E-09 79.5 9.9 100 163-264 129-255 (965)
311 2oln_A NIKD protein; flavoprot 97.5 0.00067 2.3E-08 67.2 12.9 51 209-262 158-208 (397)
312 1ps9_A 2,4-dienoyl-COA reducta 97.5 0.00018 6E-09 76.8 8.7 47 78-126 580-629 (671)
313 2pyx_A Tryptophan halogenase; 97.5 0.00048 1.6E-08 71.2 11.6 56 208-264 179-235 (526)
314 1lqt_A FPRA; NADP+ derivative, 97.5 3.1E-05 1.1E-09 78.6 2.5 89 162-261 3-107 (456)
315 2yg5_A Putrescine oxidase; oxi 97.5 6.6E-05 2.3E-09 76.0 4.9 36 3-41 4-39 (453)
316 2weu_A Tryptophan 5-halogenase 97.5 0.00064 2.2E-08 69.9 12.4 57 207-264 176-232 (511)
317 2e1m_A L-glutamate oxidase; L- 97.5 9.4E-05 3.2E-09 72.7 5.6 36 3-41 43-79 (376)
318 2jae_A L-amino acid oxidase; o 97.5 8.7E-05 3E-09 75.9 5.5 36 3-41 10-45 (489)
319 3hdq_A UDP-galactopyranose mut 97.5 0.00011 3.6E-09 72.9 5.6 36 3-41 28-63 (397)
320 1rsg_A FMS1 protein; FAD bindi 97.4 8E-05 2.7E-09 76.9 4.9 36 3-41 7-43 (516)
321 1sez_A Protoporphyrinogen oxid 97.4 8.3E-05 2.8E-09 76.4 4.8 38 1-41 10-47 (504)
322 2qcu_A Aerobic glycerol-3-phos 97.4 0.00081 2.8E-08 69.0 12.1 56 206-263 151-211 (501)
323 2e5v_A L-aspartate oxidase; ar 97.4 0.00064 2.2E-08 69.2 10.6 99 164-264 1-178 (472)
324 3lov_A Protoporphyrinogen oxid 97.4 0.00011 3.9E-09 74.8 5.0 35 4-41 4-40 (475)
325 1d5t_A Guanine nucleotide diss 97.4 0.00017 5.7E-09 72.7 5.8 59 203-263 233-291 (433)
326 3g5s_A Methylenetetrahydrofola 97.4 0.00017 5.8E-09 70.4 5.4 33 5-40 2-34 (443)
327 3p1w_A Rabgdi protein; GDI RAB 97.4 0.00015 5.2E-09 73.4 5.4 59 203-261 255-313 (475)
328 3c4a_A Probable tryptophan hyd 97.3 0.00012 4.1E-09 72.4 4.5 34 5-41 1-36 (381)
329 3g3e_A D-amino-acid oxidase; F 97.3 0.00011 3.8E-09 71.7 3.8 36 5-40 1-39 (351)
330 3da1_A Glycerol-3-phosphate de 97.3 0.00092 3.1E-08 69.6 10.7 54 208-262 174-232 (561)
331 2bi7_A UDP-galactopyranose mut 97.3 0.00019 6.6E-09 71.0 4.9 36 3-41 2-37 (384)
332 2wdq_A Succinate dehydrogenase 97.2 0.0028 9.5E-08 66.3 13.7 51 210-260 149-204 (588)
333 2ivd_A PPO, PPOX, protoporphyr 97.2 0.00021 7.3E-09 72.7 5.1 35 4-41 16-50 (478)
334 2vvm_A Monoamine oxidase N; FA 97.2 0.00023 7.9E-09 72.9 5.2 55 204-260 255-310 (495)
335 4dsg_A UDP-galactopyranose mut 97.2 0.00027 9.3E-09 72.2 5.6 36 3-41 8-44 (484)
336 1i8t_A UDP-galactopyranose mut 97.2 0.00022 7.6E-09 70.1 4.6 34 5-41 2-35 (367)
337 2iid_A L-amino-acid oxidase; f 97.2 0.00028 9.5E-09 72.3 5.1 36 3-41 32-67 (498)
338 1o94_A Tmadh, trimethylamine d 97.2 0.00047 1.6E-08 74.1 6.9 98 4-127 528-648 (729)
339 1kf6_A Fumarate reductase flav 97.1 0.002 7E-08 67.5 11.4 97 163-260 6-195 (602)
340 2dkh_A 3-hydroxybenzoate hydro 97.1 0.0019 6.4E-08 68.4 11.0 102 163-264 33-213 (639)
341 3c4a_A Probable tryptophan hyd 97.1 0.00026 8.8E-09 69.9 3.9 87 164-263 2-144 (381)
342 2rgh_A Alpha-glycerophosphate 97.1 0.00039 1.3E-08 72.5 5.4 58 203-261 187-249 (571)
343 1jnr_A Adenylylsulfate reducta 97.0 0.00042 1.4E-08 73.4 4.9 35 4-41 22-60 (643)
344 2rgh_A Alpha-glycerophosphate 96.9 0.0039 1.3E-07 65.0 11.3 34 162-195 32-65 (571)
345 1b37_A Protein (polyamine oxid 96.9 0.0007 2.4E-08 68.9 5.4 54 205-260 207-268 (472)
346 2r0c_A REBC; flavin adenine di 96.9 0.0053 1.8E-07 63.6 12.2 97 163-264 27-198 (549)
347 1chu_A Protein (L-aspartate ox 96.8 0.0028 9.5E-08 65.6 9.2 32 163-195 9-40 (540)
348 2h88_A Succinate dehydrogenase 96.8 0.0078 2.7E-07 63.2 12.2 50 211-261 162-216 (621)
349 1kdg_A CDH, cellobiose dehydro 96.8 0.001 3.5E-08 69.1 5.3 58 209-267 201-266 (546)
350 1ju2_A HydroxynitrIle lyase; f 96.8 0.00055 1.9E-08 70.9 2.9 34 4-41 26-59 (536)
351 4g65_A TRK system potassium up 96.7 0.004 1.4E-07 63.0 8.6 100 139-261 210-311 (461)
352 4gut_A Lysine-specific histone 96.7 0.0011 3.7E-08 71.5 4.5 41 217-259 542-582 (776)
353 3t37_A Probable dehydrogenase; 96.6 0.0012 4.2E-08 68.0 4.2 52 215-267 222-276 (526)
354 2z3y_A Lysine-specific histone 96.6 0.0016 5.6E-08 69.1 5.1 35 4-41 107-141 (662)
355 3q9t_A Choline dehydrogenase a 96.6 0.0014 4.8E-08 68.3 4.4 37 3-41 5-41 (577)
356 2bs2_A Quinol-fumarate reducta 96.5 0.021 7.1E-07 60.4 13.2 50 211-261 165-219 (660)
357 2xag_A Lysine-specific histone 96.5 0.0022 7.4E-08 69.8 5.4 35 4-41 278-312 (852)
358 1coy_A Cholesterol oxidase; ox 96.5 0.0024 8.3E-08 65.5 5.4 37 2-41 9-45 (507)
359 4gut_A Lysine-specific histone 96.4 0.024 8.3E-07 61.0 12.9 35 163-197 337-371 (776)
360 1pn0_A Phenol 2-monooxygenase; 96.4 0.016 5.5E-07 61.4 11.2 31 164-194 10-45 (665)
361 4gde_A UDP-galactopyranose mut 96.3 0.0051 1.8E-07 62.9 7.1 32 164-195 12-44 (513)
362 3qvp_A Glucose oxidase; oxidor 96.3 0.0024 8.3E-08 66.5 4.4 59 209-267 232-298 (583)
363 1n4w_A CHOD, cholesterol oxida 96.3 0.0032 1.1E-07 64.6 5.0 36 3-41 4-39 (504)
364 3ayj_A Pro-enzyme of L-phenyla 96.0 0.0025 8.6E-08 67.5 3.0 34 4-40 56-97 (721)
365 3kkj_A Amine oxidase, flavin-c 96.0 0.0054 1.8E-07 56.2 4.9 34 164-197 4-37 (336)
366 1gpe_A Protein (glucose oxidas 96.0 0.0049 1.7E-07 64.4 5.0 55 213-267 240-302 (587)
367 1jnr_A Adenylylsulfate reducta 95.9 0.035 1.2E-06 58.6 11.2 33 163-195 23-59 (643)
368 2jbv_A Choline oxidase; alcoho 95.9 0.0053 1.8E-07 63.6 4.7 52 210-261 215-272 (546)
369 4b63_A L-ornithine N5 monooxyg 95.9 0.032 1.1E-06 57.0 10.5 62 204-265 145-217 (501)
370 3fim_B ARYL-alcohol oxidase; A 95.9 0.0033 1.1E-07 65.2 3.0 35 4-41 2-37 (566)
371 3lk7_A UDP-N-acetylmuramoylala 95.6 0.012 4.2E-07 59.2 5.9 82 161-267 8-89 (451)
372 3p1w_A Rabgdi protein; GDI RAB 95.4 0.029 9.8E-07 56.7 7.7 39 1-42 17-55 (475)
373 3eag_A UDP-N-acetylmuramate:L- 95.3 0.021 7.3E-07 54.8 6.1 81 161-268 3-84 (326)
374 3dfz_A SIRC, precorrin-2 dehyd 95.2 0.054 1.9E-06 48.7 8.1 107 161-298 30-141 (223)
375 4dgk_A Phytoene dehydrogenase; 95.2 0.012 4.2E-07 59.9 4.2 35 163-197 2-36 (501)
376 3gyx_A Adenylylsulfate reducta 94.9 0.049 1.7E-06 57.6 8.0 32 163-194 23-60 (662)
377 3fpz_A Thiazole biosynthetic e 94.9 0.016 5.5E-07 55.5 3.9 74 152-225 55-137 (326)
378 2iid_A L-amino-acid oxidase; f 94.6 0.037 1.2E-06 56.4 5.9 62 161-222 32-110 (498)
379 1vg0_A RAB proteins geranylger 94.5 0.04 1.4E-06 57.6 5.8 61 203-263 377-438 (650)
380 1id1_A Putative potassium chan 94.2 0.064 2.2E-06 45.0 5.7 34 3-39 2-35 (153)
381 3lk7_A UDP-N-acetylmuramoylala 94.0 0.058 2E-06 54.2 5.9 80 4-129 9-88 (451)
382 3eag_A UDP-N-acetylmuramate:L- 94.0 0.06 2E-06 51.6 5.6 78 4-129 4-82 (326)
383 3llv_A Exopolyphosphatase-rela 93.7 0.066 2.2E-06 44.1 4.6 33 5-40 7-39 (141)
384 4gx0_A TRKA domain protein; me 93.6 0.099 3.4E-06 54.2 6.8 37 163-199 349-385 (565)
385 3nrn_A Uncharacterized protein 93.5 0.064 2.2E-06 53.2 5.0 34 164-197 2-35 (421)
386 1lss_A TRK system potassium up 93.2 0.089 3E-06 43.0 4.7 34 4-40 4-37 (140)
387 2g1u_A Hypothetical protein TM 93.1 0.098 3.3E-06 44.0 4.9 34 4-40 19-52 (155)
388 3ka7_A Oxidoreductase; structu 93.1 0.077 2.6E-06 52.6 4.9 34 164-197 2-35 (425)
389 3ihm_A Styrene monooxygenase A 93.0 0.068 2.3E-06 53.4 4.3 33 163-195 23-55 (430)
390 3fwz_A Inner membrane protein 93.0 0.1 3.5E-06 43.0 4.7 33 5-40 8-40 (140)
391 2b9w_A Putative aminooxidase; 92.8 0.1 3.5E-06 51.7 5.3 36 162-197 6-42 (424)
392 3dme_A Conserved exported prot 92.8 0.085 2.9E-06 50.9 4.5 33 163-195 5-37 (369)
393 2e1m_A L-glutamate oxidase; L- 92.6 0.11 3.8E-06 50.7 5.1 37 161-197 43-80 (376)
394 3k7m_X 6-hydroxy-L-nicotine ox 92.6 0.088 3E-06 52.3 4.4 34 164-197 3-36 (431)
395 2g1u_A Hypothetical protein TM 92.5 0.16 5.6E-06 42.5 5.4 36 161-196 18-53 (155)
396 2vvm_A Monoamine oxidase N; FA 92.5 0.31 1.1E-05 49.3 8.5 34 5-41 40-73 (495)
397 3nks_A Protoporphyrinogen oxid 92.5 0.095 3.2E-06 52.8 4.6 35 163-197 3-39 (477)
398 3g5s_A Methylenetetrahydrofola 92.4 0.13 4.3E-06 50.4 5.0 33 163-195 2-34 (443)
399 3fwz_A Inner membrane protein 92.2 0.16 5.6E-06 41.8 5.0 77 162-262 7-83 (140)
400 1y56_B Sarcosine oxidase; dehy 92.1 0.13 4.3E-06 50.2 4.8 33 163-195 6-38 (382)
401 3i83_A 2-dehydropantoate 2-red 92.1 0.36 1.2E-05 45.9 7.9 85 163-268 3-89 (320)
402 2jae_A L-amino acid oxidase; o 92.0 0.14 4.8E-06 51.8 5.2 36 162-197 11-46 (489)
403 3nyc_A D-arginine dehydrogenas 92.0 0.13 4.4E-06 49.9 4.8 35 162-197 9-43 (381)
404 1s3e_A Amine oxidase [flavin-c 92.0 0.14 4.9E-06 52.3 5.3 36 162-197 4-39 (520)
405 4e12_A Diketoreductase; oxidor 91.9 0.17 5.8E-06 47.3 5.3 37 1-40 1-37 (283)
406 2gf3_A MSOX, monomeric sarcosi 91.9 0.12 4.1E-06 50.4 4.4 34 163-196 4-37 (389)
407 3ic5_A Putative saccharopine d 91.9 0.16 5.4E-06 40.0 4.3 33 5-40 6-39 (118)
408 1rsg_A FMS1 protein; FAD bindi 91.7 0.13 4.4E-06 52.6 4.6 36 162-197 8-44 (516)
409 1c0p_A D-amino acid oxidase; a 91.7 0.15 5E-06 49.4 4.8 32 163-194 7-38 (363)
410 3dfz_A SIRC, precorrin-2 dehyd 91.7 0.18 6E-06 45.3 4.9 35 3-40 30-64 (223)
411 1bg6_A N-(1-D-carboxylethyl)-L 91.6 0.16 5.6E-06 49.0 4.9 36 1-39 1-36 (359)
412 2ivd_A PPO, PPOX, protoporphyr 91.5 0.16 5.6E-06 51.1 5.1 38 161-198 15-52 (478)
413 3i6d_A Protoporphyrinogen oxid 91.3 0.08 2.7E-06 53.1 2.5 35 163-197 6-46 (470)
414 1id1_A Putative potassium chan 91.3 0.28 9.4E-06 41.0 5.5 33 162-194 3-35 (153)
415 4hv4_A UDP-N-acetylmuramate--L 91.3 0.21 7.2E-06 50.7 5.6 76 161-266 21-97 (494)
416 2bcg_G Secretory pathway GDP d 91.2 0.28 9.7E-06 49.1 6.4 38 1-41 8-45 (453)
417 2bi7_A UDP-galactopyranose mut 91.1 0.18 6.2E-06 49.4 4.8 35 163-197 4-38 (384)
418 1d5t_A Guanine nucleotide diss 91.0 0.17 5.9E-06 50.4 4.5 38 1-41 3-40 (433)
419 1sez_A Protoporphyrinogen oxid 90.9 0.19 6.6E-06 51.0 4.9 36 162-197 13-48 (504)
420 3l4b_C TRKA K+ channel protien 90.9 0.2 6.7E-06 44.8 4.4 32 6-40 2-33 (218)
421 3c85_A Putative glutathione-re 90.8 0.22 7.4E-06 43.0 4.5 34 4-40 39-73 (183)
422 2x5o_A UDP-N-acetylmuramoylala 90.7 0.091 3.1E-06 52.6 2.2 77 161-266 4-80 (439)
423 2yg5_A Putrescine oxidase; oxi 90.7 0.19 6.4E-06 50.3 4.5 60 163-223 6-81 (453)
424 3dje_A Fructosyl amine: oxygen 90.7 0.21 7.3E-06 49.6 4.9 35 162-196 6-41 (438)
425 1vg0_A RAB proteins geranylger 90.7 0.66 2.2E-05 48.5 8.6 37 3-42 7-43 (650)
426 2gag_B Heterotetrameric sarcos 90.4 0.17 5.7E-06 49.6 3.7 33 163-195 22-56 (405)
427 2x5o_A UDP-N-acetylmuramoylala 90.3 0.23 7.9E-06 49.6 4.8 35 3-40 4-38 (439)
428 3llv_A Exopolyphosphatase-rela 90.3 0.27 9.3E-06 40.3 4.5 33 162-194 6-38 (141)
429 4hv4_A UDP-N-acetylmuramate--L 90.3 0.19 6.4E-06 51.1 4.1 74 5-129 23-97 (494)
430 2hmt_A YUAA protein; RCK, KTN, 90.3 0.29 1E-05 39.9 4.6 33 5-40 7-39 (144)
431 3pvc_A TRNA 5-methylaminomethy 90.2 0.25 8.5E-06 52.5 5.2 34 163-196 265-298 (689)
432 3hwr_A 2-dehydropantoate 2-red 90.2 0.38 1.3E-05 45.7 6.0 80 161-262 18-98 (318)
433 3hdq_A UDP-galactopyranose mut 90.2 0.23 8E-06 48.8 4.5 35 163-197 30-64 (397)
434 3hn7_A UDP-N-acetylmuramate-L- 90.1 0.36 1.2E-05 49.4 6.1 79 161-267 18-97 (524)
435 2ewd_A Lactate dehydrogenase,; 90.1 0.29 9.8E-06 46.6 5.0 38 1-40 1-38 (317)
436 2e4g_A Tryptophan halogenase; 90.1 0.27 9.3E-06 50.7 5.2 34 162-195 25-61 (550)
437 2hmt_A YUAA protein; RCK, KTN, 90.0 0.3 1E-05 39.8 4.5 33 162-194 6-38 (144)
438 1v0j_A UDP-galactopyranose mut 90.0 0.22 7.5E-06 49.1 4.3 36 162-197 7-43 (399)
439 3g3e_A D-amino-acid oxidase; F 89.8 0.19 6.4E-06 48.4 3.5 32 164-195 2-39 (351)
440 3ojo_A CAP5O; rossmann fold, c 89.8 2 6.7E-05 42.6 10.9 35 161-195 10-44 (431)
441 1kyq_A Met8P, siroheme biosynt 89.6 0.16 5.5E-06 47.1 2.7 35 3-40 12-46 (274)
442 2a9f_A Putative malic enzyme ( 89.6 0.3 1E-05 47.4 4.7 35 4-40 188-222 (398)
443 1t2d_A LDH-P, L-lactate dehydr 89.5 0.37 1.3E-05 46.0 5.2 38 1-40 1-38 (322)
444 3ghy_A Ketopantoate reductase 89.4 0.5 1.7E-05 45.2 6.2 78 162-261 3-81 (335)
445 3lov_A Protoporphyrinogen oxid 89.4 0.24 8.3E-06 49.8 4.1 35 163-197 5-41 (475)
446 2z3y_A Lysine-specific histone 89.4 0.34 1.2E-05 51.2 5.4 37 162-198 107-143 (662)
447 4dio_A NAD(P) transhydrogenase 89.4 0.36 1.2E-05 47.3 5.1 34 4-40 190-223 (405)
448 2xag_A Lysine-specific histone 89.3 0.33 1.1E-05 52.7 5.3 37 162-198 278-314 (852)
449 1i8t_A UDP-galactopyranose mut 89.3 0.27 9.2E-06 47.8 4.2 34 164-197 3-36 (367)
450 4ffl_A PYLC; amino acid, biosy 89.2 0.41 1.4E-05 46.4 5.4 34 5-41 2-35 (363)
451 1lss_A TRK system potassium up 89.1 0.44 1.5E-05 38.6 4.8 33 162-194 4-36 (140)
452 3ic5_A Putative saccharopine d 89.0 0.36 1.2E-05 37.8 4.1 33 162-194 5-38 (118)
453 1vl6_A Malate oxidoreductase; 89.0 0.36 1.2E-05 46.9 4.7 35 3-39 191-225 (388)
454 1kyq_A Met8P, siroheme biosynt 88.9 0.32 1.1E-05 45.1 4.2 34 161-194 12-45 (274)
455 3i83_A 2-dehydropantoate 2-red 88.3 0.45 1.5E-05 45.2 4.9 32 5-39 3-34 (320)
456 4dsg_A UDP-galactopyranose mut 88.2 0.49 1.7E-05 47.9 5.4 36 162-197 9-45 (484)
457 3p2y_A Alanine dehydrogenase/p 88.0 0.41 1.4E-05 46.5 4.4 34 4-40 184-217 (381)
458 4ezb_A Uncharacterized conserv 88.0 0.44 1.5E-05 45.3 4.6 92 163-281 25-119 (317)
459 3ego_A Probable 2-dehydropanto 88.0 1.4 4.7E-05 41.6 8.1 72 164-258 4-75 (307)
460 3d0o_A L-LDH 1, L-lactate dehy 87.9 0.58 2E-05 44.5 5.4 37 2-39 4-40 (317)
461 3ado_A Lambda-crystallin; L-gu 87.8 0.5 1.7E-05 44.9 4.8 37 162-198 6-42 (319)
462 1jw9_B Molybdopterin biosynthe 87.7 0.43 1.5E-05 43.6 4.2 36 4-41 31-66 (249)
463 3tl2_A Malate dehydrogenase; c 87.6 0.64 2.2E-05 44.1 5.5 36 2-39 6-41 (315)
464 3hn2_A 2-dehydropantoate 2-red 87.5 0.5 1.7E-05 44.7 4.7 32 5-39 3-34 (312)
465 3axb_A Putative oxidoreductase 87.4 0.29 9.8E-06 48.9 3.1 31 163-193 24-55 (448)
466 4e21_A 6-phosphogluconate dehy 87.3 0.55 1.9E-05 45.5 4.9 37 1-40 19-55 (358)
467 1y6j_A L-lactate dehydrogenase 87.0 0.69 2.4E-05 43.9 5.3 36 4-40 7-42 (318)
468 3qha_A Putative oxidoreductase 87.0 0.48 1.6E-05 44.5 4.2 37 1-40 12-48 (296)
469 3c85_A Putative glutathione-re 86.9 0.51 1.7E-05 40.6 4.0 33 162-194 39-72 (183)
470 3qsg_A NAD-binding phosphogluc 86.7 0.7 2.4E-05 43.7 5.3 89 163-281 25-115 (312)
471 3k5i_A Phosphoribosyl-aminoimi 86.2 0.77 2.6E-05 45.2 5.4 36 1-40 21-56 (403)
472 3ghy_A Ketopantoate reductase 86.2 0.78 2.7E-05 43.9 5.3 33 4-39 3-35 (335)
473 1x13_A NAD(P) transhydrogenase 86.0 0.68 2.3E-05 45.6 4.8 34 4-40 172-205 (401)
474 3g17_A Similar to 2-dehydropan 85.8 0.62 2.1E-05 43.6 4.3 33 5-40 3-35 (294)
475 1l7d_A Nicotinamide nucleotide 85.7 0.79 2.7E-05 44.8 5.1 34 4-40 172-205 (384)
476 4e12_A Diketoreductase; oxidor 85.5 0.67 2.3E-05 43.2 4.4 35 162-196 4-38 (283)
477 3l9w_A Glutathione-regulated p 85.3 0.71 2.4E-05 45.6 4.6 34 4-40 4-37 (413)
478 1ez4_A Lactate dehydrogenase; 85.3 0.91 3.1E-05 43.1 5.2 38 1-39 2-39 (318)
479 3cky_A 2-hydroxymethyl glutara 85.0 0.72 2.5E-05 43.2 4.4 36 1-39 1-36 (301)
480 4huj_A Uncharacterized protein 85.0 0.6 2.1E-05 41.7 3.6 33 4-39 23-56 (220)
481 3rui_A Ubiquitin-like modifier 84.9 0.93 3.2E-05 43.3 5.0 36 4-41 34-69 (340)
482 3gg2_A Sugar dehydrogenase, UD 84.9 0.83 2.9E-05 45.7 5.0 33 5-40 3-35 (450)
483 3h8v_A Ubiquitin-like modifier 84.9 0.8 2.7E-05 42.8 4.5 36 4-41 36-71 (292)
484 3dhn_A NAD-dependent epimerase 84.8 0.8 2.7E-05 40.6 4.4 37 1-40 1-38 (227)
485 3g79_A NDP-N-acetyl-D-galactos 84.8 0.69 2.4E-05 46.5 4.3 36 3-41 17-54 (478)
486 3oj0_A Glutr, glutamyl-tRNA re 84.8 0.58 2E-05 38.5 3.2 34 161-194 20-53 (144)
487 2izz_A Pyrroline-5-carboxylate 84.7 0.87 3E-05 43.3 4.8 39 1-39 19-58 (322)
488 1zud_1 Adenylyltransferase THI 84.6 0.84 2.9E-05 41.7 4.5 36 4-41 28-63 (251)
489 1pzg_A LDH, lactate dehydrogen 84.5 0.97 3.3E-05 43.2 5.0 34 5-40 10-43 (331)
490 1pjq_A CYSG, siroheme synthase 84.3 1.9 6.5E-05 43.2 7.3 79 161-267 11-90 (457)
491 1pjq_A CYSG, siroheme synthase 84.3 0.81 2.8E-05 45.9 4.6 34 4-40 12-45 (457)
492 1b37_A Protein (polyamine oxid 84.2 1.2 4.1E-05 44.7 5.9 38 1-41 1-39 (472)
493 2ew2_A 2-dehydropantoate 2-red 84.2 0.94 3.2E-05 42.5 4.8 32 5-39 4-35 (316)
494 1lld_A L-lactate dehydrogenase 84.1 0.97 3.3E-05 42.8 4.9 35 5-40 8-42 (319)
495 1ur5_A Malate dehydrogenase; o 83.8 1.1 3.7E-05 42.4 5.0 34 5-40 3-36 (309)
496 3ado_A Lambda-crystallin; L-gu 83.7 1 3.5E-05 42.7 4.7 33 5-40 7-39 (319)
497 2uyy_A N-PAC protein; long-cha 83.6 1.3 4.5E-05 41.8 5.5 34 4-40 30-63 (316)
498 3pl8_A Pyranose 2-oxidase; sub 83.4 1 3.5E-05 47.1 5.0 35 163-197 47-81 (623)
499 1pjc_A Protein (L-alanine dehy 83.3 1.1 3.8E-05 43.3 5.0 34 4-40 167-200 (361)
500 3gpi_A NAD-dependent epimerase 83.3 1.4 4.7E-05 40.8 5.5 34 4-40 3-36 (286)
No 1
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=100.00 E-value=2e-57 Score=463.91 Aligned_cols=399 Identities=18% Similarity=0.259 Sum_probs=326.0
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH 84 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (479)
.+||||||||||++||.+|+++|. ..+|+|||+++..+|.++++++.+.. ...... ........+++++.
T Consensus 1 PKVvIIG~G~AGl~aA~~l~~~g~-~~~V~lie~~~~~~~~~~~l~~~~~~--~~~~~~-------~~~~~~~~~~~~~~ 70 (437)
T 4eqs_A 1 PKIVVVGAVAGGATCASQIRRLDK-ESDIIIFEKDRDMSFANCALPYVIGE--VVEDRR-------YALAYTPEKFYDRK 70 (437)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHCS-SSCEEEEESSSCSSBCGGGHHHHHTT--SSCCGG-------GTBCCCHHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC-CCcEEEEeCCCCCCCCcchhHHHHcC--Cccchh-------hhhhcCHHHHHHhc
Confidence 379999999999999999999875 35699999999888888777542211 000000 00112335677889
Q ss_pred CcEEEeCceEEEEECCCcEEEeCC-----CcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhc
Q 011700 85 GIELVLGTRVKSADVRRKTLVTAT-----GETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKS 159 (479)
Q Consensus 85 gv~~~~~~~v~~i~~~~~~v~~~~-----g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~ 159 (479)
+++++.+++|+.+|.+.+.+.+.+ +.++.||+||||||++|+.|++ ++ +++++++++.++..+...+..
T Consensus 71 ~i~~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~p~i---~g---~~~~~~~~~~~~~~l~~~~~~ 144 (437)
T 4eqs_A 71 QITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSLGF---ES---DITFTLRNLEDTDAIDQFIKA 144 (437)
T ss_dssp CCEEEETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEECCCCC---CC---TTEECCSSHHHHHHHHHHHHH
T ss_pred CCEEEeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCCccccccc---cC---ceEEeeccHHHHHHHHHhhhc
Confidence 999999999999999998877632 2468999999999999887665 54 568889999999888877766
Q ss_pred CCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEE
Q 011700 160 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV 239 (479)
Q Consensus 160 ~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~ 239 (479)
..+++++|||+|++|+|+|..++++|.+||++++.+++++. +++++.+.+.+.++++||++++++++++++. +
T Consensus 145 ~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~-~d~~~~~~~~~~l~~~gV~i~~~~~v~~~~~--~---- 217 (437)
T 4eqs_A 145 NQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELDKREIPYRLNEEINAING--N---- 217 (437)
T ss_dssp HTCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTT-SCGGGGHHHHHHHHHTTCCEEESCCEEEEET--T----
T ss_pred cCCcEEEEECCccchhhhHHHHHhcCCcceeeeeecccccc-ccchhHHHHHHHhhccceEEEeccEEEEecC--C----
Confidence 57899999999999999999999999999999999999886 8999999999999999999999999999864 2
Q ss_pred EEEeCCCcEEeccEEEEecCCCCChhhhhc-cccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHH
Q 011700 240 AVNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSA 317 (479)
Q Consensus 240 ~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A 317 (479)
.+.+++|+++++|.|++++|++||+++++. ++.. ++|+|.||+++|||+|||||+|||+..++..++.+...+++..|
T Consensus 218 ~v~~~~g~~~~~D~vl~a~G~~Pn~~~~~~~gl~~~~~G~I~vd~~~~Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~~A 297 (437)
T 4eqs_A 218 EITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASVPLAWGA 297 (437)
T ss_dssp EEEETTSCEEECSEEEECCCEEESCGGGTTSSCCCCTTSCEECCTTCBCSSTTEEECGGGEEEEBSSSSSEECCCSHHHH
T ss_pred eeeecCCeEEeeeeEEEEeceecCcHHHHhhhhhhccCCcEecCCCccCCCCCEEEEEEccCcccccCCccccchhHHHH
Confidence 477899999999999999999999998764 5666 57889999999999999999999999998888888888999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEE-------EE--ccCC------CCceEEEEc--cC
Q 011700 318 RKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV-------HY--GNFS------GTTFGAYWV--NK 380 (479)
Q Consensus 318 ~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~-------~~--~~~~------~~~~~~~~~--~~ 380 (479)
.+||+++|+||++.......++.+..+..+++++++++|+++.++. .+ .... ...|.++.+ ++
T Consensus 298 ~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~p~ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~ 377 (437)
T 4eqs_A 298 HRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRVYYDTSN 377 (437)
T ss_dssp HHHHHHHHHHHHSCTTCCCCCBCCCEEEEETTEEEEEEESCGGGGGGSCEEEEEEEEESSCTTSSSCCEEEEEEEEETTT
T ss_pred HHHHHHHHHHHcCCCCcccccceeEEeeeeccceEEEeeCCHHHHHhCCceEEEEecCCchhhcCCCCcEEEEEEEECCC
Confidence 9999999999998764333455666667789999999999876541 11 1111 133555544 68
Q ss_pred CEEEEEEEeCCC-HHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCCC
Q 011700 381 GRLVGSFLEGGT-KEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQK 429 (479)
Q Consensus 381 ~~i~G~~~~g~~-~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~~ 429 (479)
++|||+|++|++ ++|+ +.++.||+.++|++||.++. +.|+|+|++.
T Consensus 378 ~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~---~~yhP~~s~~ 425 (437)
T 4eqs_A 378 RQILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFE---VAFAPPYSHP 425 (437)
T ss_dssp CBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCC---CCCCTTTCCS
T ss_pred CEEEEEEEECcCCHHHHHHHHHHHHHcCCcHHHHhcCc---cccCCCCCch
Confidence 999999999985 8887 66899999999999999886 6777877654
No 2
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=100.00 E-value=7.8e-55 Score=442.85 Aligned_cols=396 Identities=30% Similarity=0.469 Sum_probs=342.1
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN 82 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (479)
+++||||||||+||++||.+|+++|++ .+|+|||+++..+|.++.+++.++...... ........+++.
T Consensus 8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~-~~V~lie~~~~~~y~~~~l~~~~~~~~~~~----------~~~~~~~~~~~~ 76 (415)
T 3lxd_A 8 ERADVVIVGAGHGGAQAAIALRQNGFE-GRVLVIGREPEIPYERPPLSKEYLAREKTF----------ERICIRPAQFWE 76 (415)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCC-SCEEEEESSSSCCBCSGGGGTTTTTTSSCS----------GGGBSSCHHHHH
T ss_pred CCCcEEEECChHHHHHHHHHHHccCcC-CCEEEEecCCCCCcCcccCCHHHHcCCCCH----------HHhccCCHHHHH
Confidence 357999999999999999999998864 579999999999999988887665432111 112245678889
Q ss_pred HcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCC
Q 011700 83 EHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSG 162 (479)
Q Consensus 83 ~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~ 162 (479)
+.+++++.+++|..++++.+.+.+.+++++.||+||||||++|+.|++ +|.+.++++++++..++..+...+.. .+
T Consensus 77 ~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i---~g~~~~~v~~~~~~~d~~~l~~~~~~-~~ 152 (415)
T 3lxd_A 77 DKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRLSC---VGADLAGVHAVRTKEDADRLMAELDA-GA 152 (415)
T ss_dssp HTTEEEEETCCEEEEETTTTEEEETTSCEEEEEEEEECCCEECCCCBT---TSSCCBTEECCCSHHHHHHHHHHHHT-TC
T ss_pred HCCcEEEeCCEEEEEECCCCEEEECCCCEEEeeEEEEccCCccCCCCC---CCccccCEEEEcCHHHHHHHHHHhhh-cC
Confidence 999999999999999999999999999999999999999999998887 67677889999999999888776652 27
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEE
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN 242 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~ 242 (479)
++++|||+|++|+|+|..|.+.|.+|+++++.++++++.+++++.+.+.+.++++||++++++.|++++. +++++..+.
T Consensus 153 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v~~v~ 231 (415)
T 3lxd_A 153 KNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEG-DGTKVTGVR 231 (415)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEE-SSSBEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhhcCHHHHHHHHHHHHhCCCEEEECCEEEEEEe-cCCcEEEEE
Confidence 8999999999999999999999999999999999998878999999999999999999999999999987 567777899
Q ss_pred eCCCcEEeccEEEEecCCCCChhhhhc-ccccccCcEEEcCcccCCCCCeEEEeeecccccccc-CceeecccHHHHHHH
Q 011700 243 LRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLL-GETRRLEHVDSARKS 320 (479)
Q Consensus 243 ~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~-g~~~~~~~~~~A~~~ 320 (479)
+.+|+++++|.|++|+|++|++++++. ++..++ +|.||+++||++|+|||+|||+..+.... |.+.+++++..|..|
T Consensus 232 l~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~-gi~vd~~~~t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~q 310 (415)
T 3lxd_A 232 MQDGSVIPADIVIVGIGIVPCVGALISAGASGGN-GVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDM 310 (415)
T ss_dssp ESSSCEEECSEEEECSCCEESCHHHHHTTCCCSS-SEECCTTCBCSSTTEEECGGGEEEECGGGTTCEECCCSHHHHHHH
T ss_pred eCCCCEEEcCEEEECCCCccChHHHHhCCCCcCC-CEEECCCCCcCCCCEEEEEeeeeecCcccCCcceeechHHHHHHH
Confidence 999999999999999999999987754 455554 59999999999999999999999987666 788888999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCc--eEEEEccCCCCceEEEEccCCEEEEEEEeCCCHHHHHH
Q 011700 321 AKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEA 398 (479)
Q Consensus 321 g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~--~~~~~~~~~~~~~~~~~~~~~~i~G~~~~g~~~~e~~~ 398 (479)
|+.||+||++.. ..|..+|+||+.+|++.++++|...+ +.+..++.....|.++++++|+|+|+.++|. ..++..
T Consensus 311 g~~aa~~i~g~~--~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~ 387 (415)
T 3lxd_A 311 ATAAAKDICGAP--VPYKATPWFWSNQYDLKLQTVGLSTGHDNAVLRGDPATRSFSVVYLKGGKVVALDCVNM-VKDYVQ 387 (415)
T ss_dssp HHHHHHHHTTCC--CCCCCCCEEEEEETTEEEEEEECCTTCSEEEEEEEGGGTEEEEEEEETTEEEEEEEESC-HHHHHH
T ss_pred HHHHHHHhcCCC--CCCCCCCeeEeeeCCcEEEEEeCCCCCCEEEEEecCCCCeEEEEEEECCEEEEEEEECC-hHHHHH
Confidence 999999999875 57888999999999999999998653 5566677666789999999999999999995 566777
Q ss_pred HHHHHHcCCCcCcHHHHhhcC
Q 011700 399 IAKATRLQPVVEDLAELETQG 419 (479)
Q Consensus 399 ~~~~i~~~~~~~dl~~~~~~~ 419 (479)
+..+|+.+..++ ..+|.++.
T Consensus 388 ~~~~~~~~~~~~-~~~l~~~~ 407 (415)
T 3lxd_A 388 GKKLVEARAQIA-PEQLADAG 407 (415)
T ss_dssp HHHHHHHTCCCC-HHHHTCTT
T ss_pred HHHHHHCCCCCC-HHHhcCCC
Confidence 788898888775 45555433
No 3
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=100.00 E-value=5.3e-55 Score=443.04 Aligned_cols=394 Identities=26% Similarity=0.399 Sum_probs=336.5
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhH
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKW 80 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (479)
|+ +||||||||+||++||.+|+++|+ ..+|+|||+++..+|.+|.+++.++...... ... ....++
T Consensus 1 M~--~~vvIIGaG~AGl~aA~~L~~~g~-~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~----------~~~-~~~~~~ 66 (410)
T 3ef6_A 1 MA--THVAIIGNGVGGFTTAQALRAEGF-EGRISLIGDEPHLPYDRPSLSKAVLDGSLER----------PPI-LAEADW 66 (410)
T ss_dssp ----CEEEEECCSHHHHHHHHHHHHTTC-CSEEEEEECSSSSSBCSGGGGTHHHHTSSSS----------CCB-SSCTTH
T ss_pred CC--CCEEEEcccHHHHHHHHHHHccCc-CCeEEEEECCCCCCcCCccccHHHhCCCCCH----------HHh-cCCHHH
Confidence 65 599999999999999999999886 4679999999999999998887655332111 111 344677
Q ss_pred HHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcC
Q 011700 81 YNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSC 160 (479)
Q Consensus 81 ~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~ 160 (479)
+.+.+++++.+++|..++++.+++.+.+++++.||+||||||++|+.|++ ||.+.++++++++..++..+...+.
T Consensus 67 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~i---pG~~~~~v~~~~~~~d~~~l~~~~~-- 141 (410)
T 3ef6_A 67 YGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRARTMAL---PGSQLPGVVTLRTYGDVQVLRDSWT-- 141 (410)
T ss_dssp HHHTTCEEEESCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCCC---TTTTSTTEECCCSHHHHHHHHHHCC--
T ss_pred HHHCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEccCCcccCCCC---CCccccceEEeccHHHHHHHHHHhc--
Confidence 88999999999999999999999999999999999999999999998877 7767788999999999988877654
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 240 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~ 240 (479)
.+++++|||+|++|+|+|..|.+.|.+|+++++.++++++.+++++.+.+.+.++++||++++++.|++++. ++.+..
T Consensus 142 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~~~~~~ 219 (410)
T 3ef6_A 142 SATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSG--EGQLEQ 219 (410)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHHHCHHHHHHHHHHHHHHTCEEECSCCEEEEEC--SSSCCE
T ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEec--cCcEEE
Confidence 479999999999999999999999999999999999988778999999999999999999999999999986 335557
Q ss_pred EEeCCCcEEeccEEEEecCCCCChhhhhc-ccccccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHH
Q 011700 241 VNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARK 319 (479)
Q Consensus 241 v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~ 319 (479)
+.+.||+++++|.|++|+|++|++++++. ++..+ ++|.||+++||++|+|||+|||+..+... |.+.+++++..|..
T Consensus 220 v~~~dg~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~gi~vd~~~~t~~~~IyA~GD~a~~~~~~-g~~~~~~~~~~A~~ 297 (410)
T 3ef6_A 220 VMASDGRSFVADSALICVGAEPADQLARQAGLACD-RGVIVDHCGATLAKGVFAVGDVASWPLRA-GGRRSLETYMNAQR 297 (410)
T ss_dssp EEETTSCEEECSEEEECSCEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEEEBTT-SSEECCCCHHHHHH
T ss_pred EEECCCCEEEcCEEEEeeCCeecHHHHHhCCCccC-CeEEEccCeeECCCCEEEEEcceeccCCC-CCeeeechHHHHHH
Confidence 88999999999999999999999987754 45555 56999999999999999999999988765 66777889999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCc--eEEEEccCCCCceEEEEccCCEEEEEEEeCCCHHHHH
Q 011700 320 SAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYE 397 (479)
Q Consensus 320 ~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~--~~~~~~~~~~~~~~~~~~~~~~i~G~~~~g~~~~e~~ 397 (479)
||+.||+||++.. ..|..+|++|+.+|++.++++|+..+ +.+..++..+..|.+++.++|+|+|++++|. ..+..
T Consensus 298 qg~~aa~~i~g~~--~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~-~~~~~ 374 (410)
T 3ef6_A 298 QAAAVAAAILGKN--VSAPQLPVSWTEIAGHRMQMAGDIEGPGDFVSRGMPGSGAALLFRLQERRIQAVVAVDA-PRDFA 374 (410)
T ss_dssp HHHHHHHHHTTCC--CCCCBCCEEEEEETTEEEEEESCSSSSSEEEEESCTTSSSEEEEEEETTEEEEEEEESC-HHHHH
T ss_pred HHHHHHHHHcCCC--CCCCCCCeeEEEECCceEEEEcCCCCCCEEEEEeeCCCCeEEEEEEECCEEEEEEEECC-hHHHH
Confidence 9999999999875 57888999999999999999998653 5666777766778889999999999999996 56667
Q ss_pred HHHHHHHcCCCcCcHHHHhhcCCC
Q 011700 398 AIAKATRLQPVVEDLAELETQGLG 421 (479)
Q Consensus 398 ~~~~~i~~~~~~~dl~~~~~~~~~ 421 (479)
.+..+|+.+..++ ..+|.++.+.
T Consensus 375 ~~~~~i~~~~~~~-~~~l~~~~~~ 397 (410)
T 3ef6_A 375 LATRLVEARAAIE-PARLADLSNS 397 (410)
T ss_dssp HHHHHHHHTCBCC-HHHHHCTTSC
T ss_pred HHHHHHhCCCCCC-HHHhcCCCCC
Confidence 7778888888775 3566544443
No 4
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=100.00 E-value=5.9e-54 Score=434.77 Aligned_cols=392 Identities=31% Similarity=0.469 Sum_probs=340.1
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH 84 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (479)
+||||||||+||++||.+|+++|++ .+|+|||+++..+|.++.+++.++...... ........+++.+.
T Consensus 2 k~vvIIGaG~aGl~aA~~L~~~g~~-~~V~lie~~~~~~y~~~~l~~~~l~~~~~~----------~~~~~~~~~~~~~~ 70 (404)
T 3fg2_P 2 DTVLIAGAGHAGFQVAVSLRQAKYP-GRIALINDEKHLPYQRPPLSKAYLKSGGDP----------NSLMFRPEKFFQDQ 70 (404)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCC-SCEEEECCSSSSSBCSGGGGTGGGGSCCCT----------TSSBSSCHHHHHHT
T ss_pred CCEEEEcChHHHHHHHHHHHhhCcC-CCEEEEeCCCCCCCCCccCCHHHHCCCCCH----------HHccCCCHHHHHhC
Confidence 6899999999999999999999873 459999999999999999887766433211 11224567888999
Q ss_pred CcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCC
Q 011700 85 GIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGN 164 (479)
Q Consensus 85 gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~ 164 (479)
+++++. ++|..++++.+.+.+.+++++.||+||+|||++|+.|++ +|.+.++++++++..++..+...+.. +++
T Consensus 71 ~i~~~~-~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~i---~g~~~~~v~~~~~~~d~~~l~~~~~~--~~~ 144 (404)
T 3fg2_P 71 AIELIS-DRMVSIDREGRKLLLASGTAIEYGHLVLATGARNRMLDV---PNASLPDVLYLRTLDESEVLRQRMPD--KKH 144 (404)
T ss_dssp TEEEEC-CCEEEEETTTTEEEESSSCEEECSEEEECCCEEECCCCS---TTTTSTTEECCSSHHHHHHHHHHGGG--CSE
T ss_pred CCEEEE-EEEEEEECCCCEEEECCCCEEECCEEEEeeCCCccCCCC---CCCCCCcEEEECCHHHHHHHHHHhhc--CCe
Confidence 999999 799999999999999999999999999999999988877 67677889999999999888877653 799
Q ss_pred EEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC
Q 011700 165 AVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 244 (479)
Q Consensus 165 vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~ 244 (479)
++|||+|++|+|+|..+.+.|.+|+++++.++++++.+++++.+.+.+.++++||++++++.|++++. +++++..+.+.
T Consensus 145 vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v~~V~~~ 223 (404)
T 3fg2_P 145 VVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAA-EGDRVTGVVLS 223 (404)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEET
T ss_pred EEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcEEEECCEEEEEEe-cCCcEEEEEeC
Confidence 99999999999999999999999999999999998878999999999999999999999999999987 45677789999
Q ss_pred CCcEEeccEEEEecCCCCChhhhhc-ccccccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHH
Q 011700 245 DGNRLPTDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKH 323 (479)
Q Consensus 245 ~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~ 323 (479)
+|+++++|.|++|+|++|++++++. ++..++| |.||+++||++|+|||+|||+..+...+|.+.+++++..|..||+.
T Consensus 224 dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~G-i~vd~~~~t~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~ 302 (404)
T 3fg2_P 224 DGNTLPCDLVVVGVGVIPNVEIAAAAGLPTAAG-IIVDQQLLTSDPHISAIGDCALFESVRFGETMRVESVQNATDQARC 302 (404)
T ss_dssp TSCEEECSEEEECCCEEECCHHHHHTTCCBSSS-EEECTTSBCSSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHHH
T ss_pred CCCEEEcCEEEECcCCccCHHHHHhCCCCCCCC-EEECCCcccCCCCEEEeecceeecCccCCceeeehHHHHHHHHHHH
Confidence 9999999999999999999987754 5655644 9999999999999999999999988777888888999999999999
Q ss_pred HHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCc--eEEEEccCCCCceEEEEccCCEEEEEEEeCCCHHHHHHHHH
Q 011700 324 AVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAK 401 (479)
Q Consensus 324 aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~--~~~~~~~~~~~~~~~~~~~~~~i~G~~~~g~~~~e~~~~~~ 401 (479)
||+||++.. ..|..+|+||+.+|++.++++|...+ +.+..++.....|.++++++|+|+|+.++|. ..++..+..
T Consensus 303 aa~~i~g~~--~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~ 379 (404)
T 3fg2_P 303 VAARLTGDA--KPYDGYPWFWSDQGDDKLQIVGLTAGFDQVVIRGSVAERSFSAFCYKAGKLIGIESVNR-AADHVFGRK 379 (404)
T ss_dssp HHHHTTTCC--CCCCCCCEEEEEETTEEEEEEECCTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEESC-HHHHHHHHH
T ss_pred HHHHhCCCC--CCCCCCCceEeEECCcEEEEEeCCCCCCEEEEEecCCCCcEEEEEEECCEEEEEEEeCC-HHHHHHHHH
Confidence 999999875 57888999999999999999998653 4566777766789999999999999999995 566777788
Q ss_pred HHHcCCCcCcHHHHhhcC
Q 011700 402 ATRLQPVVEDLAELETQG 419 (479)
Q Consensus 402 ~i~~~~~~~dl~~~~~~~ 419 (479)
+|+.+..++ ..+|.++.
T Consensus 380 ~~~~~~~~~-~~~l~~~~ 396 (404)
T 3fg2_P 380 ILPLDKSVT-PEQAADLS 396 (404)
T ss_dssp HTTTTCCCC-HHHHHCTT
T ss_pred HHHcCCCCC-HHHhcCCC
Confidence 898888775 45555443
No 5
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=100.00 E-value=1.6e-53 Score=434.59 Aligned_cols=390 Identities=29% Similarity=0.472 Sum_probs=323.4
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhH
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKW 80 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (479)
|+.++||||||||+||++||..|+++|. ..+|+|||+++..+|.++.+++.++..... . ........++
T Consensus 1 M~~~~~vvIIGgG~aGl~aA~~l~~~g~-~~~V~lie~~~~~~~~~~~l~~~~~~~~~~--~--------~~~~~~~~~~ 69 (431)
T 1q1r_A 1 MNANDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYLAGKAT--A--------ESLYLRTPDA 69 (431)
T ss_dssp -CCSCEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSCCSCCBCSGGGGTTTTTTCSC--S--------GGGBSSCHHH
T ss_pred CCCCCcEEEEcCHHHHHHHHHHHHccCc-CCCEEEEECCCCCCCcCCCCcHHHhCCCCC--h--------HHhcccCHHH
Confidence 6567999999999999999999999886 345999999988889888877665532211 0 1112345678
Q ss_pred HHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCC---eEEecCHHHHHHHHHHH
Q 011700 81 YNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAEN---VCYLRDLADANRLVNVM 157 (479)
Q Consensus 81 ~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~---v~~~~~~~~~~~l~~~l 157 (479)
+++.+++++.+++|..++.+.+++.+.+++++.||+||+|||++|+.|++ +|.+.++ ++++++.+++..+.+.+
T Consensus 70 ~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~p~~~~i---~G~~~~~~~~v~~~~~~~d~~~l~~~l 146 (431)
T 1q1r_A 70 YAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPV---ASGAVGKANNFRYLRTLEDAECIRRQL 146 (431)
T ss_dssp HHHTTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCGG---GTTHHHHSTTEEESSSHHHHHHHHHTC
T ss_pred HHhCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEcCCCCccCCCC---CCcccCCCceEEEECCHHHHHHHHHHh
Confidence 88999999999999999999899999888899999999999999998887 5544344 88889998888776655
Q ss_pred hcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEc-CCC
Q 011700 158 KSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVD-SNG 236 (479)
Q Consensus 158 ~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~-~~g 236 (479)
. .+++++|||+|++|+|+|..|.+.|.+|+++++.++++++.+++++.+.+.+.+++.||++++++.+.+++.+ +++
T Consensus 147 ~--~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~ 224 (431)
T 1q1r_A 147 I--ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQ 224 (431)
T ss_dssp C--TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTC
T ss_pred h--cCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccchhhHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCC
Confidence 3 4799999999999999999999999999999999999887789999999999999999999999999999862 345
Q ss_pred cEEEEEeCCCcEEeccEEEEecCCCCChhhhhc-ccccccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHH
Q 011700 237 KVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD 315 (479)
Q Consensus 237 ~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~ 315 (479)
++..+.+.+|+++++|.|++|+|++|++++++. ++..+ ++|.||+++||+.|+|||+|||+..+.+.+|.+.+++++.
T Consensus 225 ~v~~v~~~~G~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~-~gi~Vd~~~~ts~~~IyA~GD~~~~~~~~~g~~~~~~~~~ 303 (431)
T 1q1r_A 225 KVTAVLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVD-NGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVP 303 (431)
T ss_dssp CEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEEEETTTTEEEECCSHH
T ss_pred cEEEEEeCCCCEEEcCEEEECCCCCcCcchhhccCCCCC-CCEEECCCcccCCCCEEEEEeEEEEccccCCceEeeCHHH
Confidence 666788999999999999999999999987754 45555 4599999999999999999999998876667777778999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCc--eEEEEccCCCCceEEEEccCCEEEEEEEeCCCH
Q 011700 316 SARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTK 393 (479)
Q Consensus 316 ~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~--~~~~~~~~~~~~~~~~~~~~~~i~G~~~~g~~~ 393 (479)
.|..||+.||+||++.. ..|..+|++|+.+++++++++|++++ +.+..++.....|.+++.++++|+|++++|+.+
T Consensus 304 ~A~~qg~~aa~~i~g~~--~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~g~~~ 381 (431)
T 1q1r_A 304 NALEQARKIAAILCGKV--PRDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVLAVDTVNRPV 381 (431)
T ss_dssp HHHHHHHHHHHHHTTCC--CCCCCCCEEEEEETTEEEEEEECCTTCSEEEEEEETTTTEEEEEEEETTEEEEEEEESCHH
T ss_pred HHHHHHHHHHHHhcCCC--CCCCCCCeEEEEECCceEEEEeCCCCCCEEEEEccCCCCeEEEEEEeCCEEEEEEEECChH
Confidence 99999999999999865 46778999999999999999998653 455566655566777888899999999999775
Q ss_pred HHHHHHHHHHHcCCCcC
Q 011700 394 EEYEAIAKATRLQPVVE 410 (479)
Q Consensus 394 ~e~~~~~~~i~~~~~~~ 410 (479)
.+. ....+|..+.++.
T Consensus 382 ~~~-~~~~~i~~~~~~~ 397 (431)
T 1q1r_A 382 EFN-QSKQIITDRLPVE 397 (431)
T ss_dssp HHH-HHHHHHHTTCCCC
T ss_pred HHH-HHHHHHHCCCCCC
Confidence 544 3445555555543
No 6
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=100.00 E-value=3.1e-54 Score=443.08 Aligned_cols=400 Identities=20% Similarity=0.238 Sum_probs=311.8
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH 84 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (479)
+||||||||+||++||.+|++++ +..+|+|||+++...|..+.+.. ++.. ..... ........+++.+.
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~-~g~~V~vie~~~~~g~~~~~~~~-~~~~-~~~~~--------~~~~~~~~~~~~~~ 71 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKY-PQAEISLIDKQATVGYLSGGLSA-YFNH-TINEL--------HEARYITEEELRRQ 71 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHC-SSSEEEEECSSSCCSSCCC--------------------------CCCCHHHHHHT
T ss_pred CCEEEECCCHHHHHHHHHHHhhC-cCCcEEEEECCCCCcccCccchh-hhcC-CCCCH--------HHhhcCCHHHHHHC
Confidence 69999999999999999999972 12349999999876665433321 1100 00000 11113366788899
Q ss_pred CcEEEeCceEEEEECCCcEEEeC---CCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCC
Q 011700 85 GIELVLGTRVKSADVRRKTLVTA---TGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCS 161 (479)
Q Consensus 85 gv~~~~~~~v~~i~~~~~~v~~~---~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~ 161 (479)
+++++.+++|..++.+.+.+.+. +++++.||+||||||++|..|++ +|.+.+++++++++.+...+.+... .
T Consensus 72 gi~~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~p~i---~g~~~~~v~~~~~~~~~~~~~~~~~--~ 146 (452)
T 3oc4_A 72 KIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQI---RGSQTEKLLKYKFLSGALAAVPLLE--N 146 (452)
T ss_dssp TEEEECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCCCBCCCCC---BTTTCTTEEEGGGCC----CCHHHH--T
T ss_pred CCEEEECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCcccCCCCC---CCCCCCCEEEeCCHHHHHHHHHHHh--c
Confidence 99999999999999999888763 55689999999999999998887 6666678898887777766555444 4
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEE
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAV 241 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v 241 (479)
+++++|||+|++|+|+|..|.++|.+|+++++.++++++.+++++.+.+.+.++++||++++++.|++++. +++.+ .+
T Consensus 147 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v-~v 224 (452)
T 3oc4_A 147 SQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEE-TANGI-VL 224 (452)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTCCHHHHHHHHHHHHTTTEEEEETCCEEEEEE-CSSCE-EE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccccCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEc-cCCeE-EE
Confidence 79999999999999999999999999999999999998778999999999999999999999999999986 34555 67
Q ss_pred EeCCCcEEeccEEEEecCCCCChhhhhccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHH
Q 011700 242 NLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKS 320 (479)
Q Consensus 242 ~~~~g~~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~ 320 (479)
.+.++ ++++|.|++|+|++|++++++..+.. ++|+|.||+++||++|+|||+|||+..+....+.+.+.+++..|..|
T Consensus 225 ~~~~g-~i~aD~Vv~A~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~ 303 (452)
T 3oc4_A 225 ETSEQ-EISCDSGIFALNLHPQLAYLDKKIQRNLDQTIAVDAYLQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRT 303 (452)
T ss_dssp EESSC-EEEESEEEECSCCBCCCSSCCTTSCBCTTSCBCCCTTCBCSSTTEEECGGGBCEEEGGGTEEECCCCHHHHHHH
T ss_pred EECCC-EEEeCEEEECcCCCCChHHHHhhhccCCCCCEEECcCccCCCCCEEEEEeeEEeccccCCceeecchHHHHHHH
Confidence 77777 89999999999999999987765555 57899999999999999999999999876666666666789999999
Q ss_pred HHHHHHHHcCCCCCCCCC-CCCeEEEeecCcceEeecCCCceEE---------EEcc------CCCCceEEEEc--cCCE
Q 011700 321 AKHAVAAIMEPDKTDKFD-YLPFFYSRVFTLSWQFYGDNVGEVV---------HYGN------FSGTTFGAYWV--NKGR 382 (479)
Q Consensus 321 g~~aa~~i~~~~~~~~~~-~~p~~~~~~~~~~~~~~G~~~~~~~---------~~~~------~~~~~~~~~~~--~~~~ 382 (479)
|+.||+||++... .+. ..+...+.+|+.+++++|+++.++. .+.. .....|.++.+ ++++
T Consensus 304 g~~aa~~i~g~~~--~~~~~~~~~~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ 381 (452)
T 3oc4_A 304 GLVVANNLEEKTH--RFIGSLRTMGTKVGDYYLASTGLTETEGLFFPQTLASIIVRQPAPPLQHGTEILGKLIYDKVTQR 381 (452)
T ss_dssp HHHHTTSSSSCCC--CCCCCCCCEEEEETTEEEEEEECCSGGGGGSSSCEEEEEEEEECTTTTCSCEEEEEEEEETTTCB
T ss_pred HHHHHHHhcCCCc--cCCCccccEEEEEcCeeEEEecCCHHHHHHCCCceEEEEEecCCccCCCCCeEEEEEEEECCCCE
Confidence 9999999998643 222 2334556778889999999876531 1110 01245666655 5799
Q ss_pred EEEEEEeCC-CHHHH-HHHHHHHHcCCCcCcHHHH-hhcCCCcccc
Q 011700 383 LVGSFLEGG-TKEEY-EAIAKATRLQPVVEDLAEL-ETQGLGFALA 425 (479)
Q Consensus 383 i~G~~~~g~-~~~e~-~~~~~~i~~~~~~~dl~~~-~~~~~~~a~~ 425 (479)
|||+|++|+ +++|+ +.++.||++++|++||.++ +..||++++.
T Consensus 382 ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~ 427 (452)
T 3oc4_A 382 VLGAQLCSKNNCLEKINTLALSIQTGQTLTDLLQKDYFYQPSLTNI 427 (452)
T ss_dssp EEEEEEEESSCCTHHHHHHHHHHHTTCBHHHHHTCCCCCCTTTSCS
T ss_pred EEEEEEEeCCCHHHHHHHHHHHHHcCCCHHHHHhhHhccCCCCCCc
Confidence 999999999 78887 6689999999999999987 4445555443
No 7
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=100.00 E-value=5.6e-54 Score=443.64 Aligned_cols=411 Identities=21% Similarity=0.288 Sum_probs=304.6
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCC-CCCCCCCcccccCCcccCCCHhHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPE-APARLPSFHTCVGANEERLTPKWYN 82 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (479)
++||+|||||+||++||.+|++++ +..+|+|||+++..+|.++.++..+.... ....+..+. .......+++.
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~-~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~ 76 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLD-PEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATP-----YNVVRDPEFFR 76 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHC-TTSEEEEECCC--------------------------------------------
T ss_pred CCcEEEECCCHHHHHHHHHHHhhC-cCCCEEEEECCCcccccccccchhhcCCCCchHHhcccc-----chhccCHHHHh
Confidence 579999999999999999999982 12349999999987777654432111000 000000000 00112233343
Q ss_pred -HcCcEEEeCceEEEEECCCcEEEeCC---Cc--EEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHH
Q 011700 83 -EHGIELVLGTRVKSADVRRKTLVTAT---GE--TISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNV 156 (479)
Q Consensus 83 -~~gv~~~~~~~v~~i~~~~~~v~~~~---g~--~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~ 156 (479)
+.+++++.+++|..++.+.+.+.+.+ ++ ++.||+||||||++|..|++ +|.+.++++++++..++..+.+.
T Consensus 77 ~~~gi~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i---~G~~~~~v~~~~~~~~~~~l~~~ 153 (472)
T 3iwa_A 77 INKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPPV---EGMDLAGVTPVTNLDEAEFVQHA 153 (472)
T ss_dssp ----CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCSC---TTTTSBTEEECCSHHHHHHHHHH
T ss_pred hhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcCCCCC---CCCCCCCEEEeCCHHHHHHHHHH
Confidence 57999999999999999999888754 54 78999999999999988877 67666789999999988888776
Q ss_pred HhcCCCCCEEEECCChHHHHHHHHHhhC-CCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCC
Q 011700 157 MKSCSGGNAVVIGGGYIGMECAASLVIN-KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSN 235 (479)
Q Consensus 157 l~~~~~~~vvVIGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~ 235 (479)
+....+++++|||+|++|+|+|..|.+. |.+|+++++.++++++.+++++.+.+.+.+++.||+++++++|++++. ++
T Consensus 154 l~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~ 232 (472)
T 3iwa_A 154 ISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEG-EN 232 (472)
T ss_dssp CCTTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEE-SS
T ss_pred hhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHHHHHHHHHHHHhcCCEEEeCCEEEEEEc-cC
Confidence 6544589999999999999999999999 999999999999998568999999999999999999999999999987 45
Q ss_pred CcEEEEEeCCCcEEeccEEEEecCCCCChhhhhc-cccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeeccc
Q 011700 236 GKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEH 313 (479)
Q Consensus 236 g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~ 313 (479)
+.+. +.+.+|+++++|.|++|+|++|++++++. ++.. ++|+|.||+++||++|+|||+|||+..+...+|.+...++
T Consensus 233 ~~v~-v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~ 311 (472)
T 3iwa_A 233 GKVA-RVITDKRTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIPNLVTGKPGFFPL 311 (472)
T ss_dssp SBEE-EEEESSCEEECSEEEECSCEEECCHHHHHHTCCBCTTCCEECCTTCBCSSTTEEECGGGEEEEBTTTSSEECCCC
T ss_pred CeEE-EEEeCCCEEEcCEEEECCCCCcCHHHHHhCCccCCCCCCEEECCCcccCCCCEEEeccceecccccCCceeecch
Confidence 5553 77888999999999999999999987654 5666 5789999999999999999999999888776677666778
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEE---------EEccC--------CCCceEEE
Q 011700 314 VDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV---------HYGNF--------SGTTFGAY 376 (479)
Q Consensus 314 ~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~---------~~~~~--------~~~~~~~~ 376 (479)
+..|..||+.||+||++... .....+|++++.+++.+++++|+++.++. .+... ....|.++
T Consensus 312 ~~~A~~~g~~aa~~i~g~~~-~~~~~~~~~~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~kl 390 (472)
T 3iwa_A 312 GSMANRQGRVIGTNLADGDA-TFPGAVGSWAVKLFEGSASGAGLTVEGALREGYDAVNVHVEQFDRAHFYPEKTIMTLQL 390 (472)
T ss_dssp TTHHHHHHHHHHHHHTTCCC-CCCCBCCCEEEECSSCEEEEEECCHHHHHHTTCCEEEEEEEC-----------CEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCc-cCCCCCcceEEEECCceeEEEECCHHHHHHcCCceEEEEEecCCccCccCCCceEEEEE
Confidence 88999999999999998653 23345778888899999999999875421 11111 11345665
Q ss_pred Ec--cCCEEEEEEEeCC---CHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCCC
Q 011700 377 WV--NKGRLVGSFLEGG---TKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQK 429 (479)
Q Consensus 377 ~~--~~~~i~G~~~~g~---~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~~ 429 (479)
.+ ++++|||+|++|+ .+.|+ +.++.||+.++|++||.+++ +.|+|+|++.
T Consensus 391 i~~~~~~~ilG~~~~g~~~~~~~~~i~~~~~ai~~~~t~~~l~~~~---~~~~P~~~~~ 446 (472)
T 3iwa_A 391 VVDRPTRRVLGIQGFSTLGDALTARINAVATMLASKPTVEDISNAE---VVYSPPFASA 446 (472)
T ss_dssp EEETTTCBEEEEEEEESCHHHHHHHHHHHHHHHTTCCBHHHHHTCC---CC--------
T ss_pred EEECCCCEEEEEEEECCCcccHHHHHHHHHHHHHcCCCHHHHhccc---ccCCCCCCCc
Confidence 55 6899999999999 34676 66899999999999999887 5566666543
No 8
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=100.00 E-value=7e-54 Score=440.18 Aligned_cols=404 Identities=21% Similarity=0.229 Sum_probs=316.2
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHH-
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWY- 81 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 81 (479)
+++||||||||+||++||..|++++. ..+|+|||+++...|..+.++..+ ... ... ........+++
T Consensus 2 ~~~~VvIIGgG~aGl~aA~~L~~~~~-~~~V~vie~~~~~~~~~~~~p~~~-~~~--~~~--------~~~~~~~~~~~~ 69 (449)
T 3kd9_A 2 SLKKVVIIGGGAAGMSAASRVKRLKP-EWDVKVFEATEWVSHAPCGIPYVV-EGL--STP--------DKLMYYPPEVFI 69 (449)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCT-TSEEEEECSSSCCC-----------------------------------CTHH
T ss_pred CcCcEEEECCcHHHHHHHHHHHHhCc-CCCEEEEECCCccccCCcCCcccc-CCC--CCH--------HHhhhcCHHHHH
Confidence 45899999999999999999999732 335999999986555432222111 000 000 00112223344
Q ss_pred HHcCcEEEeCceEEEEECCCcEEEeCCC-cEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcC
Q 011700 82 NEHGIELVLGTRVKSADVRRKTLVTATG-ETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSC 160 (479)
Q Consensus 82 ~~~gv~~~~~~~v~~i~~~~~~v~~~~g-~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~ 160 (479)
++.+++++.+++|..++.+.+.+.+.++ .++.||+||||||++|+.|++ +|.+.+++++.++..++..+.+.+...
T Consensus 70 ~~~gi~v~~~~~v~~i~~~~~~v~~~~g~~~~~~d~lviAtG~~p~~p~i---~G~~~~~v~~~~~~~~~~~~~~~~~~~ 146 (449)
T 3kd9_A 70 KKRGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQVPAI---EGVNLKGVFTADLPPDALAIREYMEKY 146 (449)
T ss_dssp HHTTCEEETTCEEEEECSSEEEEECSSSEEEEECSEEEECCCEEECCCSC---BTTTSTTEECSCSTHHHHHHHHHHSSS
T ss_pred HhcCcEEEecCEEEEEecCCCEEEECCceEEEEcCEEEECCCCCCCCCCC---CCCCCCCEEEeCCHHHHHHHHHHHHhc
Confidence 6889999999999999998888888777 489999999999999988876 676667888888888888888777655
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 240 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~ 240 (479)
.+++++|||+|++|+|+|..|.+.|.+|+++++.+++++..+++++.+.+.+.+++. |++++++.+.+++.+ +.+..
T Consensus 147 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~--~~v~~ 223 (449)
T 3kd9_A 147 KVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKH-VNLRLQEITMKIEGE--ERVEK 223 (449)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTTT-SEEEESCCEEEEECS--SSCCE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhC-cEEEeCCeEEEEecc--CcEEE
Confidence 689999999999999999999999999999999999998768999999999999999 999999999999863 23333
Q ss_pred EEeCCCcEEeccEEEEecCCCCChhhhhc-cccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHH
Q 011700 241 VNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSAR 318 (479)
Q Consensus 241 v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~ 318 (479)
+ +.+++++++|.|++|+|++|++++++. ++.. ++|+|.||+++||++|+|||+|||+..+....|.+...+++..|.
T Consensus 224 v-~~~g~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~ 302 (449)
T 3kd9_A 224 V-VTDAGEYKAELVILATGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVAETRHVITGRRVWVPLAPAGN 302 (449)
T ss_dssp E-EETTEEEECSEEEECSCEEECCHHHHHTTCCBCTTSSBCCCTTCBCSSTTEEECSTTBCEEBTTTCSEECCCCHHHHH
T ss_pred E-EeCCCEEECCEEEEeeCCccCHHHHHhCCccCCCCCCEEECCCCccCCCCEEEeeeeeeeccccCCceEEeccHHHHH
Confidence 3 457789999999999999999987754 5666 578899999999999999999999998776667766678899999
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEE---------EEc--c------CCCCceEEEEc--c
Q 011700 319 KSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV---------HYG--N------FSGTTFGAYWV--N 379 (479)
Q Consensus 319 ~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~---------~~~--~------~~~~~~~~~~~--~ 379 (479)
.||+.+++||++... ......|+.++.+++.+++++|+++.++. .+. + .....|.++.+ +
T Consensus 303 ~~g~~aa~~i~g~~~-~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~ 381 (449)
T 3kd9_A 303 KMGYVAGSNIAGKEL-HFPGVLGTAVTKFMDVEIGKTGLTEMEALKEGYDVRTAFIKASTRPHYYPGGREIWLKGVVDNE 381 (449)
T ss_dssp HHHHHHHHHHTTCCC-CCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCEEEEEEEEESSCTTSTTCCEEEEEEEEETT
T ss_pred HHHHHHHHHhcCCCc-cCCCcccceEEEEcCcEEEEecCCHHHHHHCCCceEEEEEecCCccccCCCCceEEEEEEEECC
Confidence 999999999998653 22234577788999999999999875431 110 0 01134666655 5
Q ss_pred CCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCCC
Q 011700 380 KGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQK 429 (479)
Q Consensus 380 ~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~~ 429 (479)
+++|||+|++|++++|+ +.++.||+.++|++||.++. +.|+|+|++.
T Consensus 382 ~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~---~~~~p~~~~~ 429 (449)
T 3kd9_A 382 TNRLLGVQVVGSDILPRIDTAAAMLMAGFTTKDAFFTD---LAYAPPFAPV 429 (449)
T ss_dssp TCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTCC---CCCBTTTBCS
T ss_pred CCEEEEEEEEChHHHHHHHHHHHHHHcCCcHHHHhhcc---cccCCCCCCc
Confidence 69999999999999998 56899999999999998875 5777777654
No 9
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=100.00 E-value=7e-54 Score=430.20 Aligned_cols=362 Identities=21% Similarity=0.317 Sum_probs=307.3
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
+.+|||||||+||++||.+|.+.+. +|+|||+++..+|.++.+++.+...... ........+++++
T Consensus 9 ~~~~vIvGgG~AGl~aA~~L~~~~~---~itlie~~~~~~y~~~~l~~~l~g~~~~-----------~~l~~~~~~~~~~ 74 (385)
T 3klj_A 9 STKILILGAGPAGFSAAKAALGKCD---DITMINSEKYLPYYRPRLNEIIAKNKSI-----------DDILIKKNDWYEK 74 (385)
T ss_dssp BCSEEEECCSHHHHHHHHHHTTTCS---CEEEECSSSSCCBCGGGHHHHHHSCCCG-----------GGTBSSCHHHHHH
T ss_pred CCCEEEEcCcHHHHHHHHHHhCCCC---EEEEEECCCCCCcccChhhHHHcCCCCH-----------HHccCCCHHHHHH
Confidence 5789999999999999999954444 4999999999999998887643221111 1122567888999
Q ss_pred cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCC
Q 011700 84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGG 163 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~ 163 (479)
++++++.+++|+++|++++++.+.+|+++.||+||||||++|+.|++ +|.+ +++++++++++..+...+.. ++
T Consensus 75 ~~i~~~~~~~V~~id~~~~~v~~~~g~~~~yd~lvlAtG~~p~~p~i---~G~~--~v~~~~~~~d~~~l~~~l~~--~~ 147 (385)
T 3klj_A 75 NNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANKIKV---PHAD--EIFSLYSYDDALKIKDECKN--KG 147 (385)
T ss_dssp TTCEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCCC---TTCS--CEECCSSHHHHHHHHHHHHH--HS
T ss_pred CCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEecCCCcCCCCC---CCCC--CeEEeCCHHHHHHHHHHhhc--CC
Confidence 99999999999999999999999999999999999999999998887 6655 78999999999988877753 78
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL 243 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~ 243 (479)
+++|||+|++|+|+|..|++.|.+||++++.++++++.+++++.+.+.+.++++||++++++.++++
T Consensus 148 ~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i------------- 214 (385)
T 3klj_A 148 KAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM------------- 214 (385)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEECSCCGGGC-------------
T ss_pred eEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCCCEEEeCCEEEEc-------------
Confidence 9999999999999999999999999999999999998789999999999999999999999887655
Q ss_pred CCCcEEeccEEEEecCCCCChhhhhc-ccccccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHH
Q 011700 244 RDGNRLPTDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAK 322 (479)
Q Consensus 244 ~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~ 322 (479)
|+++++|.|++++|++|++++++. ++..++ +|.||+++||+.|+|||+|||+..+... ..++..|..||+
T Consensus 215 --g~~~~~D~vv~a~G~~p~~~~~~~~gl~~~~-gi~vd~~~~t~~~~IyA~GD~a~~~~~~------~~~~~~A~~qg~ 285 (385)
T 3klj_A 215 --GDLIRSSCVITAVGVKPNLDFIKDTEIASKR-GILVNDHMETSIKDIYACGDVAEFYGKN------PGLINIANKQGE 285 (385)
T ss_dssp --HHHHHHSEEEECCCEEECCGGGTTSCCCBSS-SEEECTTCBCSSTTEEECGGGEEETTBC------CCCHHHHHHHHH
T ss_pred --CeEEecCeEEECcCcccChhhhhhcCCCcCC-CEEECCCcccCCCCEEEEEeeEecCCCc------ccHHHHHHHHHH
Confidence 567899999999999999988765 455554 5999999999999999999999876432 257889999999
Q ss_pred HHHHHHcCCCCCCCCCC-CCeEEEeecCcceEeecCCCce---EEEEccCCCCceEEEEccCCEEEEEEEeCCCHHHHHH
Q 011700 323 HAVAAIMEPDKTDKFDY-LPFFYSRVFTLSWQFYGDNVGE---VVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEA 398 (479)
Q Consensus 323 ~aa~~i~~~~~~~~~~~-~p~~~~~~~~~~~~~~G~~~~~---~~~~~~~~~~~~~~~~~~~~~i~G~~~~g~~~~e~~~ 398 (479)
.||+||++.. ..|.. +|++|+.+++++++++|+++++ .+.. +.....|.++++++|+|+|++++|+.+.+ ..
T Consensus 286 ~aa~~i~g~~--~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~g~~~~g~~~~~-~~ 361 (385)
T 3klj_A 286 VAGLNACGED--ASYSEIIPSPILKVSGISIISCGDIENNKPSKVFR-STQEDKYIVCMLKENKIDAAAVIGDVSLG-TK 361 (385)
T ss_dssp HHHHHHTTCC--CCCCCCCCCCEEEETTEEEEEESCCTTCCCSEEEE-EECSSCEEEEEEETTEEEEEEEESCHHHH-HH
T ss_pred HHHHHhcCCC--cCCCCCCCcEEEEeCCCcEEEEcCCCCCCCeEEEE-ECCCCeEEEEEEECCEEEEEEEECCcHHH-HH
Confidence 9999999865 35554 6999999999999999987643 2333 44456799999999999999999976554 46
Q ss_pred HHHHHHcCCCcCcH
Q 011700 399 IAKATRLQPVVEDL 412 (479)
Q Consensus 399 ~~~~i~~~~~~~dl 412 (479)
+..+|+++.+++++
T Consensus 362 ~~~~i~~~~~~~~~ 375 (385)
T 3klj_A 362 LKKAIDSSKSFDNI 375 (385)
T ss_dssp HHHHHHTTCBCSCC
T ss_pred HHHHHHcCCCcccc
Confidence 78899999999987
No 10
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=100.00 E-value=9.6e-56 Score=459.24 Aligned_cols=416 Identities=18% Similarity=0.205 Sum_probs=273.1
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC------CCCCccccc------ccCCCCC-----CCCCCcc
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP------YERPALSKG------YLLPEAP-----ARLPSFH 66 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~------~~~~~l~~~------~~~~~~~-----~~~~~~~ 66 (479)
+||+||||+||||+.||.+++++|.+ |+|||+.+... +...|+..+ ++..... .....+.
T Consensus 42 dYDviVIG~GpaG~~aA~~aa~~G~k---ValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~G 118 (542)
T 4b1b_A 42 DYDYVVIGGGPGGMASAKEAAAHGAR---VLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYG 118 (542)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTCC---EEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGT
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcC
Confidence 48999999999999999999999988 99999765321 222222111 1110000 0000010
Q ss_pred cccCC-----------------cccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeC----CCcEEEeceEEeecCCCc
Q 011700 67 TCVGA-----------------NEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTA----TGETISYKILIIATGARA 125 (479)
Q Consensus 67 ~~~~~-----------------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~----~g~~~~~d~lviAtG~~~ 125 (479)
..... .........+++.+|+++.+. ..-+++..-.+... +++++++|++|||||++|
T Consensus 119 i~~~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~-a~f~~~~~v~V~~~~~~~~~~~i~a~~iiIATGs~P 197 (542)
T 4b1b_A 119 WKFDNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGL-AKLKDKNTVSYYLKGDLSKEETVTGKYILIATGCRP 197 (542)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEE-EEEEETTEEEEEEC--CCCEEEEEEEEEEECCCEEE
T ss_pred cccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeee-EEEcCCCcceEeecccCCceEEEeeeeEEeccCCCC
Confidence 00000 000112234567899999884 34344433233222 336799999999999999
Q ss_pred ccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHH
Q 011700 126 LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK 205 (479)
Q Consensus 126 ~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~ 205 (479)
..|+.+ +.+.+.+++.+++.+ +++ .|++++|||+|++|+|+|..|+++|.+||++.+ +++++. +|++
T Consensus 198 ~~P~~~---~~~~~~~~ts~~~l~-------l~~-lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~-~~~L~~-~D~e 264 (542)
T 4b1b_A 198 HIPDDV---EGAKELSITSDDIFS-------LKK-DPGKTLVVGASYVALECSGFLNSLGYDVTVAVR-SIVLRG-FDQQ 264 (542)
T ss_dssp CCCSSS---BTHHHHCBCHHHHTT-------CSS-CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEES-SCSSTT-SCHH
T ss_pred CCCCcc---cCCCccccCchhhhc-------ccc-CCceEEEECCCHHHHHHHHHHHhcCCeEEEecc-cccccc-cchh
Confidence 988652 222222332222211 122 589999999999999999999999999999987 467775 8999
Q ss_pred HHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhhc---cccc-ccCc-EEE
Q 011700 206 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG---QLTL-EKGG-IKV 280 (479)
Q Consensus 206 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~---~~~~-~~g~-i~V 280 (479)
+++.+.+.|+++||++++++.+.+++.. ++. ..+.+.+++++++|.|++|+|++||++.+.. ++.. .+++ |.|
T Consensus 265 i~~~l~~~l~~~gi~~~~~~~v~~~~~~-~~~-~~v~~~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~v 342 (542)
T 4b1b_A 265 CAVKVKLYMEEQGVMFKNGILPKKLTKM-DDK-ILVEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIA 342 (542)
T ss_dssp HHHHHHHHHHHTTCEEEETCCEEEEEEE-TTE-EEEEETTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECC
T ss_pred HHHHHHHHHHhhcceeecceEEEEEEec-CCe-EEEEEcCCCeEEEEEEEEcccccCCccccCcccceeeecccCceEec
Confidence 9999999999999999999999999873 333 3578889889999999999999999986543 4554 3344 688
Q ss_pred cCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCC-CCCCCCCeEEEeecCcceEeecCCC
Q 011700 281 TGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSWQFYGDNV 359 (479)
Q Consensus 281 d~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~p~~~~~~~~~~~~~~G~~~ 359 (479)
|+++|||+|+|||+|||++... .+.+.|..||+++++|+++.... .+|..+|+ ..+++.+++.+|+++
T Consensus 343 d~~~~Ts~p~IyAiGDv~~~~p---------~La~~A~~eg~~aa~~i~g~~~~~~d~~~iP~--~vft~PeiA~VGlTE 411 (542)
T 4b1b_A 343 DHLSCTNIPSIFAVGDVAENVP---------ELAPVAIKAGEILARRLFKDSDEIMDYSYIPT--SIYTPIEYGACGYSE 411 (542)
T ss_dssp CTTSBCSSTTEEECTTSBTTCC---------CCHHHHHHHHHHHHHHHHSCCCCCCCCSSCCE--EECSSSCEEEEECCH
T ss_pred cccccccCCCeEEeccccCCch---------hHHHHHHHHHHHHHHHHhcCCCcccCCCCCce--EEeCCCCeEEEeCCH
Confidence 9999999999999999996521 34677899999999999986543 57778886 556788899999987
Q ss_pred ceEEEEc----------c-------------------------CCCCceEEEEc---cCCEEEEEEEeCCCHHHH-HHHH
Q 011700 360 GEVVHYG----------N-------------------------FSGTTFGAYWV---NKGRLVGSFLEGGTKEEY-EAIA 400 (479)
Q Consensus 360 ~~~~~~~----------~-------------------------~~~~~~~~~~~---~~~~i~G~~~~g~~~~e~-~~~~ 400 (479)
.++...+ . .....|.++.. ++++|||+|++|++|+|+ +.++
T Consensus 412 ~eA~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vKli~~~~~t~~ILGa~ivG~~A~ElI~~~a 491 (542)
T 4b1b_A 412 EKAYELYGKSNVEVFLQEFNNLEISAVHRQKHIRAQKDEYDLDVSSTCLAKLVCLKNEDNRVIGFHYVGPNAGEVTQGMA 491 (542)
T ss_dssp HHHHHHHCTTTEEEEEC-----------------------------CCCEEEEEETTTTTBEEEEEEESTTHHHHHHHHH
T ss_pred HHHHHhCCCCcEEEEEeeccchhhhhhhhhhhhhcccccccccCCCceEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHH
Confidence 6542110 0 00123555442 579999999999999998 5589
Q ss_pred HHHHcCCCcCcHHHHhhcCCCcccccCCCCCCCCCCCCCcccccccCCC
Q 011700 401 KATRLQPVVEDLAELETQGLGFALAVSQKPLPSTPVDGKTVPGLVLGKS 449 (479)
Q Consensus 401 ~~i~~~~~~~dl~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (479)
.||+.++|++||.+++..||+++|.+.++..+.+||.+....+||+++|
T Consensus 492 lAi~~~~t~~dl~~~i~~HPTlsE~l~~~~~t~~~g~~~~~~~~c~g~~ 540 (542)
T 4b1b_A 492 LALRLKVKKKDFDNCIGIHPTDAESFMNLFVTISSGLSYAAKGGCGGGK 540 (542)
T ss_dssp HHHHTCCBHHHHHHC----------------------------------
T ss_pred HHHHcCCCHHHHhccCCcCCCHHHHHHHHHHHHHcCCCHHHccCCCCCc
Confidence 9999999999999999999999999999999999999999888887765
No 11
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=100.00 E-value=3.4e-52 Score=422.02 Aligned_cols=384 Identities=27% Similarity=0.433 Sum_probs=317.7
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
++||+|||||+||++||.+|+++|. ..+|+|||+++..+|.++.+++.++....... .... ++++
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g~-~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~-~~~~ 71 (408)
T 2gqw_A 7 KAPVVVLGAGLASVSFVAELRQAGY-QGLITVVGDEAERPYDRPPLSKDFMAHGDAEK-------------IRLD-CKRA 71 (408)
T ss_dssp CSSEEEECCSHHHHHHHHHHHHHTC-CSCEEEEESSCSCCBCSGGGGTHHHHHCCGGG-------------SBCC-CTTS
T ss_pred CCcEEEECChHHHHHHHHHHHccCC-CCeEEEEECCCCCcccCCCCCHHHhCCCchhh-------------hhHH-HHHH
Confidence 5899999999999999999999886 34599999999888888777655442211000 0111 4567
Q ss_pred cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCC
Q 011700 84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGG 163 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~ 163 (479)
.+++++.+++|..++.+.+++.+.+++++.||+||||||++|+.|++ ++|.+ ++++++++.+++..+.+.+. .++
T Consensus 72 ~~v~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~i--~~G~~-~~v~~~~~~~~~~~l~~~~~--~~~ 146 (408)
T 2gqw_A 72 PEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPT--LQGAT-MPVHTLRTLEDARRIQAGLR--PQS 146 (408)
T ss_dssp CSCEEEETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCGG--GTTCS-SCEEECCSHHHHHHHHTTCC--TTC
T ss_pred CCCEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCCCCc--cCCCC-CcEEEECCHHHHHHHHHHhh--cCC
Confidence 89999999889999999999999888899999999999999988875 04444 67888999988887765443 379
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL 243 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~ 243 (479)
+++|||+|++|+|+|..|.+.|.+||++++.++++++.+++++.+.+.+.++++||++++++++++++ ++ .+.+
T Consensus 147 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~---~~---~v~~ 220 (408)
T 2gqw_A 147 RLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSV---DG---VVLL 220 (408)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEE---TT---EEEE
T ss_pred eEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccccCHHHHHHHHHHHHHcCcEEEeCCEEEEEE---CC---EEEE
Confidence 99999999999999999999999999999999999877899999999999999999999999999997 23 5778
Q ss_pred CCCcEEeccEEEEecCCCCChhhhhc-ccccccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHH
Q 011700 244 RDGNRLPTDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAK 322 (479)
Q Consensus 244 ~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~ 322 (479)
.+|+++++|.|++|+|++|++++++. ++..++ +|.||+++||++|+|||+|||+..+...+|.+.+++++..|..||+
T Consensus 221 ~~g~~i~~D~vi~a~G~~p~~~l~~~~gl~~~~-gi~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~ 299 (408)
T 2gqw_A 221 DDGTRIAADMVVVGIGVLANDALARAAGLACDD-GIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGI 299 (408)
T ss_dssp TTSCEEECSEEEECSCEEECCHHHHHHTCCBSS-SEECCTTCBCSSTTEEECGGGEEEEETTTTEEECCCCHHHHHHHHH
T ss_pred CCCCEEEcCEEEECcCCCccHHHHHhCCCCCCC-CEEECCCCccCCCCEEEEEEEEEecCccCCceeeccHHHHHHHHHH
Confidence 89999999999999999999987754 455554 4999999999999999999999987665676666788999999999
Q ss_pred HHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecC-CCceEEEEccCC--CCceEEEEccCCEEEEEEEeCCCHHHHHHH
Q 011700 323 HAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGD-NVGEVVHYGNFS--GTTFGAYWVNKGRLVGSFLEGGTKEEYEAI 399 (479)
Q Consensus 323 ~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~-~~~~~~~~~~~~--~~~~~~~~~~~~~i~G~~~~g~~~~e~~~~ 399 (479)
.||.||.+... ..|..+|++|+.+++++++++|+ ...+.+..++.. ...|.+++.++++|+|++++|+.+ ++..+
T Consensus 300 ~aa~~i~g~~~-~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~g~~~-~~~~~ 377 (408)
T 2gqw_A 300 AVARHLVDPTA-PGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDAPKFTLIELQKGRIVGATCVNNAR-DFAPL 377 (408)
T ss_dssp HHHHHHHCTTS-CCCCCCCEEEEEETTEEEEEEECSCCSEEEEESCCCSSSCCEEEEEEETTEEEEEEEESCHH-HHHHH
T ss_pred HHHHHhcCCCC-CcCCCCCeEEEEECCceEEEECCCCCCEEEEEccCCCCCCeEEEEEEeCCEEEEEEEECChH-HHHHH
Confidence 99999998653 26788999999999999999998 223455555554 456888888899999999999754 56778
Q ss_pred HHHHHcCCCcCcHHHHhh
Q 011700 400 AKATRLQPVVEDLAELET 417 (479)
Q Consensus 400 ~~~i~~~~~~~dl~~~~~ 417 (479)
..+|+.+.++.. .++..
T Consensus 378 ~~~i~~~~~~~~-~~l~~ 394 (408)
T 2gqw_A 378 RRLLAVGAKPDR-AALAD 394 (408)
T ss_dssp HHHHHTTCCCCH-HHHHC
T ss_pred HHHHHCCCCCCh-HHhcC
Confidence 899999998764 34543
No 12
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=100.00 E-value=2.6e-53 Score=440.27 Aligned_cols=406 Identities=19% Similarity=0.236 Sum_probs=319.1
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
++||||||||+||+++|..|+++|.+..+|+|||+++...|..+.+.. ++.. ..... ........+++++
T Consensus 35 ~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~-~~~~-~~~~~--------~~~~~~~~~~~~~ 104 (490)
T 2bc0_A 35 GSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSNISFLGAGMAL-WIGE-QIAGP--------EGLFYSDKEELES 104 (490)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSCCSBCGGGHHH-HHTT-SSSCS--------GGGBSCCHHHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCCCCccccccch-hhcC-ccCCH--------HHhhhcCHHHHHh
Confidence 489999999999999999999987112349999999765554322210 1110 00000 1112345677888
Q ss_pred cCcEEEeCceEEEEECCCcEEEeC-CC--cEEEeceEEeecCCCcccccccCCCCCC-----------CCCeEEecCHHH
Q 011700 84 HGIELVLGTRVKSADVRRKTLVTA-TG--ETISYKILIIATGARALKLEEFGLSGSD-----------AENVCYLRDLAD 149 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~~-~g--~~~~~d~lviAtG~~~~~~~~~g~~g~~-----------~~~v~~~~~~~~ 149 (479)
.+++++.+++|..++.+.+++.+. ++ +++.||+||||||++|..|++ +|.+ .+++++++++.+
T Consensus 105 ~gv~v~~~~~v~~i~~~~~~v~v~~~g~~~~~~~d~lviAtG~~p~~p~i---~G~~~~~~~~~f~~~~~~v~~~~~~~~ 181 (490)
T 2bc0_A 105 LGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPI---KGAEIKEGSLEFEATLENLQFVKLYQN 181 (490)
T ss_dssp TTCEEETTCCEEEEETTTTEEEEEETTEEEEEECSEEEECCCEEECCCSC---BTCCBCTTCTTCCBSSTTEEECSSHHH
T ss_pred CCCEEEeCCEEEEEECCCCEEEEEeCCcEEEEECCEEEECCCCCcCCCCC---CCccccccccccccccCCEEEeCCHHH
Confidence 999999998999999988888876 53 579999999999999998877 5544 467999999999
Q ss_pred HHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEE
Q 011700 150 ANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSS 229 (479)
Q Consensus 150 ~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~ 229 (479)
+..+.+.+....+++++|||+|++|+|+|..|+++|.+||++++.++++++.+++++.+.+.+.+++.||++++++++++
T Consensus 182 ~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~ 261 (490)
T 2bc0_A 182 SADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKE 261 (490)
T ss_dssp HHHHHHHTTSTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEETCCEEE
T ss_pred HHHHHHHhhhcCCceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhhhHHHHHHHHHHHHHHHhCCeEEEeCCEEEE
Confidence 88887776334689999999999999999999999999999999999998668999999999999999999999999999
Q ss_pred EEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhhccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCce
Q 011700 230 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGET 308 (479)
Q Consensus 230 i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~ 308 (479)
++. ++++..+.+ +|+++++|.|++|+|++|++++++..+.. ++|+|.||+++||+.|+|||+|||+..+....+.+
T Consensus 262 i~~--~~~v~~v~~-~g~~i~~D~Vi~a~G~~p~~~ll~~~l~~~~~G~I~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~ 338 (490)
T 2bc0_A 262 VAG--NGKVEKIIT-DKNEYDVDMVILAVGFRPNTTLGNGKIDLFRNGAFLVNKRQETSIPGVYAIGDCATIYDNATRDT 338 (490)
T ss_dssp EEC--SSSCCEEEE-SSCEEECSEEEECCCEEECCGGGTTCSCBCTTSCBCCCTTCBCSSTTEEECGGGBCEEETTTTEE
T ss_pred EEc--CCcEEEEEE-CCcEEECCEEEECCCCCcChHHHHhhhccCCCCCEEECCCcccCCCCEEEeeeeEEeccccCCce
Confidence 985 444434555 67899999999999999999987655555 57889999999999999999999999876655666
Q ss_pred eecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEE---------EEcc-------C--CC
Q 011700 309 RRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV---------HYGN-------F--SG 370 (479)
Q Consensus 309 ~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~---------~~~~-------~--~~ 370 (479)
.+++++..|..||+.||.||++... ....+.|++++.+|+.+++++|+++.++. .+.+ . ..
T Consensus 339 ~~~~~~~~A~~qg~~aa~~i~g~~~-~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~ 417 (490)
T 2bc0_A 339 NYIALASNAVRTGIVAAHNACGTDL-EGIGVQGSNGISIYGLHMVSTGLTLEKAKRLGFDAAVTEYTDNQKPEFIEHGNF 417 (490)
T ss_dssp ECCCCHHHHHHHHHHHHHHHTTCCC-CCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCEEEEEEEEESSCTTCCSSCC
T ss_pred eecccHHHHHHHHHHHHHHhcCCCC-CCCCcccceEEEECCcEeEEeeCCHHHHHHcCCceEEEEEecCCcccccCCCCc
Confidence 5667899999999999999997542 22334567778889999999998764321 1111 0 11
Q ss_pred CceEEEEc--cCCEEEEEEEeCC-CHHHH-HHHHHHHHcCCCcCcHHHH-hhcCCCccccc
Q 011700 371 TTFGAYWV--NKGRLVGSFLEGG-TKEEY-EAIAKATRLQPVVEDLAEL-ETQGLGFALAV 426 (479)
Q Consensus 371 ~~~~~~~~--~~~~i~G~~~~g~-~~~e~-~~~~~~i~~~~~~~dl~~~-~~~~~~~a~~~ 426 (479)
..|.++.. ++++|+|+|++|+ ++.|+ +.++.||+.++|++|+.++ +..||++++.+
T Consensus 418 ~~~~kl~~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~ 478 (490)
T 2bc0_A 418 PVTIKIVYDKDSRRILGAQMAAREDVSMGIHMFSLAIQEGVTIEKLALTDIFFLPHFNKPY 478 (490)
T ss_dssp EEEEEEEEETTTCBEEEEEEEESSCCTTHHHHHHHHHHHTCBHHHHHHSCCCCCTTTCCTT
T ss_pred eEEEEEEEECCCCEEEEEEEEcCcCHHHHHHHHHHHHHcCCCHHHHhhcceecCCCCCchh
Confidence 24555554 5799999999999 78887 6689999999999999886 66666666654
No 13
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=100.00 E-value=2.8e-53 Score=436.04 Aligned_cols=403 Identities=18% Similarity=0.282 Sum_probs=319.4
Q ss_pred CeEEEECCchHHHHHHHHHHHc--CCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700 5 FVYVIVGGGVAAGYAALEFTKR--GVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN 82 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~--g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (479)
+||||||||+||++||..|+++ |.+ |+|||+++..+|..+.+.. ++... .... . .........++++
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~---V~lie~~~~~~~~~~~~~~-~~~g~-~~~~-~-----~~~~~~~~~~~~~ 69 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHPDAD---VTAYEMNDNISFLSCGIAL-YLGKE-IKNN-D-----PRGLFYSSPEELS 69 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCE---EEEEESSSCCCBCGGGHHH-HHTTC-BGGG-C-----GGGGBSCCHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhhCcCCc---EEEEECCCCCCcccccchh-hhcCC-cccC-C-----HHHhhhcCHHHHH
Confidence 5899999999999999999998 554 9999999865554322211 11100 0000 0 0111234567788
Q ss_pred HcCcEEEeCceEEEEECCCcEEEeCC-----CcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHH
Q 011700 83 EHGIELVLGTRVKSADVRRKTLVTAT-----GETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVM 157 (479)
Q Consensus 83 ~~gv~~~~~~~v~~i~~~~~~v~~~~-----g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l 157 (479)
+.+++++.++++..++.+.+++.+.+ +++++||+||||||++|+.|++ +|.+.+++++++++.+...+.+..
T Consensus 70 ~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~~p~i---~g~~~~~v~~~~~~~~~~~~~~~~ 146 (452)
T 2cdu_A 70 NLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPI---PGIDSSRVYLCKNYNDAKKLFEEA 146 (452)
T ss_dssp HTTCEEEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEECCCCC---TTTTSTTEEECSSHHHHHHHHHHG
T ss_pred HcCCEEEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcCCCCC---CCCCCCCEEEeCcHHHHHHHHHHh
Confidence 89999999988999998888887753 4679999999999999998876 666667899999999988887766
Q ss_pred hcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCc
Q 011700 158 KSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGK 237 (479)
Q Consensus 158 ~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~ 237 (479)
. .+++++|||+|++|+|+|..|.++|.+|+++++.++++++.+++++.+.+.+.++++||+++++++|++++. ++++
T Consensus 147 ~--~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~-~~~~ 223 (452)
T 2cdu_A 147 P--KAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEE-VDDE 223 (452)
T ss_dssp G--GCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEESSCEEEEEE-ETTE
T ss_pred c--cCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhHHHHHHHHHHHCCCEEEcCCeeEEEEc-CCCe
Confidence 4 489999999999999999999999999999999999998668999999999999999999999999999986 3555
Q ss_pred EEEEEeCCCcEEeccEEEEecCCCCChhhhhccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHH
Q 011700 238 VVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS 316 (479)
Q Consensus 238 v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~ 316 (479)
+..+.+ +|+++++|.|++|+|++|++++++..+.. ++|+|.||+++||++|+|||+|||+..+....|.+.+++++..
T Consensus 224 v~~v~~-~g~~i~~D~vv~a~G~~p~~~ll~~~l~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~ 302 (452)
T 2cdu_A 224 IITKTL-DGKEIKSDIAILCIGFRPNTELLKGKVAMLDNGAIITDEYMHSSNRDIFAAGDSAAVHYNPTNSNAYIPLATN 302 (452)
T ss_dssp EEEEET-TSCEEEESEEEECCCEEECCGGGTTTSCBCTTSCBCCCTTSBCSSTTEEECSTTBCEEETTTTEEECCCCHHH
T ss_pred EEEEEe-CCCEEECCEEEECcCCCCCHHHHHHhhhcCCCCCEEECCCcCcCCCCEEEcceEEEeccccCCCeeecchHHH
Confidence 554555 78899999999999999999987655555 5788999999999999999999999987666666666688999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEE---------EEccC--------CCCceEEEEc-
Q 011700 317 ARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV---------HYGNF--------SGTTFGAYWV- 378 (479)
Q Consensus 317 A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~---------~~~~~--------~~~~~~~~~~- 378 (479)
|..||+.||+||++... ....+.|++++.+|+++++.+|+++.++. .+.+. ....|.++..
T Consensus 303 A~~~g~~aa~~i~g~~~-~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 381 (452)
T 2cdu_A 303 AVRQGRLVGLNLTEDKV-KDMGTQSSSGLKLYGRTYVSTGINTALAKANNLKVSEVIIADNYRPEFMLSTDEVLMSLVYD 381 (452)
T ss_dssp HHHHHHHHHHTSSSCCC-CCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCCEEEEEEEESSCTTBSCCCEEEEEEEEC
T ss_pred HHHHHHHHHHHhCCCCC-cCCCccceEEEEECCeeeEeecCCHHHHHHcCCceEEEEEecCCccccCCCCceEEEEEEEE
Confidence 99999999999997542 22334677788999999999998865331 11110 1124555554
Q ss_pred -cCCEEEEEEEeCC-CHHHH-HHHHHHHHcCCCcCcHHHH-hhcCCCccccc
Q 011700 379 -NKGRLVGSFLEGG-TKEEY-EAIAKATRLQPVVEDLAEL-ETQGLGFALAV 426 (479)
Q Consensus 379 -~~~~i~G~~~~g~-~~~e~-~~~~~~i~~~~~~~dl~~~-~~~~~~~a~~~ 426 (479)
++++|+|+|++|+ ++.|+ +.++.+|++++|++|+..+ +..||++++.+
T Consensus 382 ~~~~~ilG~~~~g~~~~~~~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~ 433 (452)
T 2cdu_A 382 PKTRVILGGALSSMHDVSQSANVLSVCIQNKNTIDDLAMVDMLFQPQFDRPF 433 (452)
T ss_dssp TTTCBEEEEEEEESSCCHHHHHHHHHHHHTTCBHHHHHHSCCCCCTTTCCSS
T ss_pred CCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhhhhccCCCCCchH
Confidence 4799999999999 78887 6689999999999999886 66666666554
No 14
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=100.00 E-value=1.1e-52 Score=443.87 Aligned_cols=403 Identities=24% Similarity=0.348 Sum_probs=322.9
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH-H
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN-E 83 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 83 (479)
+||+|||||+||++||.+|++++. ..+|+|||+++..+|.++.++..+ ..... + .........+++. +
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~~~-~~~V~lie~~~~~~~~~~~l~~~~-~~~~~---~------~~~~~~~~~~~~~~~ 70 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRLSE-TAEIIMFERGEYVSFANCGLPYHI-SGEIA---Q------RSALVLQTPESFKAR 70 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCS-SSEEEEECSSSCSSBCGGGHHHHH-TSSSC---C------GGGGBCCCHHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhhCc-CCCEEEEECCCCccccccCchHHh-cCCcC---C------hHHhhccCHHHHHHh
Confidence 699999999999999999999842 345999999998777654443211 11000 0 0111123344444 5
Q ss_pred cCcEEEeCceEEEEECCCcEEEeCC---Cc--EEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHh
Q 011700 84 HGIELVLGTRVKSADVRRKTLVTAT---GE--TISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMK 158 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~~~---g~--~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~ 158 (479)
.+++++.+++|+.++.+.+.+.+.+ +. ++.||+||||||++|+.|++ ||.+..++++++++.++..+.+.+.
T Consensus 71 ~~i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i---pG~~~~~v~~~~~~~~~~~l~~~~~ 147 (565)
T 3ntd_A 71 FNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPI---PGVDNPLTHSLRNIPDMDRILQTIQ 147 (565)
T ss_dssp HCCEEETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCC---TTCCSTTEECCSSHHHHHHHHHHHH
T ss_pred cCcEEEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCCCCCC---CCCCCCCEEEeCCHHHHHHHHHHHh
Confidence 8999999999999999999887753 43 78999999999999988877 7777778999999998888877766
Q ss_pred cCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEc-----
Q 011700 159 SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVD----- 233 (479)
Q Consensus 159 ~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~----- 233 (479)
...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.||++++++.+.+++.+
T Consensus 148 ~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~ 226 (565)
T 3ntd_A 148 MNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTP-VDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHV 226 (565)
T ss_dssp HTTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTT-SCHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCC
T ss_pred hCCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccchh-cCHHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccc
Confidence 667899999999999999999999999999999999999984 89999999999999999999999999999863
Q ss_pred -------------CCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhhc-cccc-ccCcEEEcCcccCCCCCeEEEeeec
Q 011700 234 -------------SNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVA 298 (479)
Q Consensus 234 -------------~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~ 298 (479)
+++.+ .+.+.+|+++++|.|++|+|++|++++++. ++.. ++|+|.||+++||++|+|||+|||+
T Consensus 227 ~~~~~~~~~~~~~~~~~~-~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~ 305 (565)
T 3ntd_A 227 ASDAAGEDTAHQHIKGHL-SLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDPAIYAVGDAV 305 (565)
T ss_dssp CCGGGTCCCTTCCTTCEE-EEEETTSCEEEESEEEECSCEEECCHHHHHHTCCBCTTSSBCCCTTCBCSSTTEEECGGGB
T ss_pred cccccccccccccCCCcE-EEEEcCCCEEEcCEEEECcCCccchHHHHhCCcccCCCCCEEECCCcccCCCCEEEeeeeE
Confidence 23443 467788999999999999999999987654 5666 5789999999999999999999999
Q ss_pred cccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCC-CCeEEEeecCcceEeecCCCceE---------EEEccC
Q 011700 299 AFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDY-LPFFYSRVFTLSWQFYGDNVGEV---------VHYGNF 368 (479)
Q Consensus 299 ~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~-~p~~~~~~~~~~~~~~G~~~~~~---------~~~~~~ 368 (479)
..+...+|.+...+++..|..||+.||+||++... .|.. .|+.++.+|+.+++++|+++.++ ..+...
T Consensus 306 ~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~--~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~g~~~~~~~~~~~ 383 (565)
T 3ntd_A 306 EEQDFVTGQACLVPLAGPANRQGRMAADNMFGREE--RYQGTQGTAICKVFDLAVGATGKNEKQLKQAGIAFEKVYVHTA 383 (565)
T ss_dssp CEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCCC--CCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCCEEEEEEEE
T ss_pred eeccccCCceeecccHHHHHHHHHHHHHHhcCCCc--cCCCcccceEEEEcCcEEEEecCCHHHHHHcCCCeEEEEEecC
Confidence 88877677776778899999999999999998653 3444 45566788999999999987652 111110
Q ss_pred --------CCCceEEEEc--cCCEEEEEEEeCCCH-HHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCC
Q 011700 369 --------SGTTFGAYWV--NKGRLVGSFLEGGTK-EEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQ 428 (479)
Q Consensus 369 --------~~~~~~~~~~--~~~~i~G~~~~g~~~-~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~ 428 (479)
....|.++.+ ++++|||+|++|+++ +|+ +.++.||+.++|++||.++. +.|+|+|.+
T Consensus 384 ~~~~~~~~~~~~~~k~v~~~~~~~ilG~~~~g~~a~~e~i~~~~~ai~~~~~~~~l~~~~---~~~~P~~~~ 452 (565)
T 3ntd_A 384 SHASYYPGAEVVSFKLLFDPVKGTIFGAQAVGKDGIDKRIDVMAVAQRAGMTVEQLQHLE---LSYAPPYGS 452 (565)
T ss_dssp SSCTTSTTCCEEEEEEEECTTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBHHHHTTCC---CCCCTTTCC
T ss_pred cccCcCCCCceEEEEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCHHHHhhhh---hccCcccCc
Confidence 1134566655 689999999999998 776 66899999999999998876 556666653
No 15
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=100.00 E-value=6.8e-52 Score=439.37 Aligned_cols=403 Identities=23% Similarity=0.323 Sum_probs=322.6
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
++||||||||+||++||.+|++++ +..+|+|||+++..+|..+.++..+. .. .. +. ..........+.++
T Consensus 36 ~~~VvIIGgG~AGl~aA~~L~~~~-~g~~V~vie~~~~~~~~~~~lp~~~~-g~-~~--~~-----~~~~~~~~~~~~~~ 105 (588)
T 3ics_A 36 SRKIVVVGGVAGGASVAARLRRLS-EEDEIIMVERGEYISFANCGLPYYIG-GV-IT--ER-----QKLLVQTVERMSKR 105 (588)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHC-SSSEEEEECSSSCSSBCGGGHHHHHT-TS-SC--CG-----GGGBSSCHHHHHHH
T ss_pred CCCEEEECCcHHHHHHHHHHHhhC-cCCCEEEEECCCCccccCCCCchhhc-Cc-CC--Ch-----HHhhccCHHHHHHh
Confidence 479999999999999999999983 12349999999887776544432111 00 00 00 00011233445568
Q ss_pred cCcEEEeCceEEEEECCCcEEEeC---CCc--EEEeceEEeecCCCcccccccCCCCC-CCCCeEEecCHHHHHHHHHHH
Q 011700 84 HGIELVLGTRVKSADVRRKTLVTA---TGE--TISYKILIIATGARALKLEEFGLSGS-DAENVCYLRDLADANRLVNVM 157 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~~---~g~--~~~~d~lviAtG~~~~~~~~~g~~g~-~~~~v~~~~~~~~~~~l~~~l 157 (479)
.+++++.+++|+.++.+.+.+.+. +++ ++.||+||||||++|+.|++ +|. +.+++++.+++.+...+...+
T Consensus 106 ~gi~v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i---~G~~~~~~v~~~~~~~~~~~~~~~l 182 (588)
T 3ics_A 106 FNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPSI---PGIEEAKALFTLRNVPDTDRIKAYI 182 (588)
T ss_dssp TTCEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCC---TTTTTCTTEEECSSHHHHHHHHHHH
T ss_pred cCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCCCCCCCC---CCcccCCCeEEeCCHHHHHHHHHHH
Confidence 899999999999999999988774 455 78999999999999998877 666 567899999999988887777
Q ss_pred hcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCc
Q 011700 158 KSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGK 237 (479)
Q Consensus 158 ~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~ 237 (479)
....+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.||++++++.|++++.+ ++
T Consensus 183 ~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~- 259 (588)
T 3ics_A 183 DEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP-IDYEMAAYVHEHMKNHDVELVFEDGVDALEEN-GA- 259 (588)
T ss_dssp HHHCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHTTCEEECSCCEEEEEGG-GT-
T ss_pred hhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc-CCHHHHHHHHHHHHHcCCEEEECCeEEEEecC-CC-
Confidence 6556899999999999999999999999999999999999987 89999999999999999999999999999863 22
Q ss_pred EEEEEeCCCcEEeccEEEEecCCCCChhhhhc-cccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHH
Q 011700 238 VVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD 315 (479)
Q Consensus 238 v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~ 315 (479)
.+.+.+|+++++|.|++|+|++|++++++. ++.. ++|+|.||+++||++|+|||+|||+..+...+|.+...+++.
T Consensus 260 --~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~ 337 (588)
T 3ics_A 260 --VVRLKSGSVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDPHIYAIGDAIEVKDFVTETETMIPLAW 337 (588)
T ss_dssp --EEEETTSCEEECSEEEECSCEEECCHHHHHTTCCBCGGGCBCCCTTSBCSSTTEEECGGGBCEEBTTTCCEECCCCHH
T ss_pred --EEEECCCCEEEcCEEEEccCCCCChHHHHhcCceEcCCCCEEECCccccCCCCEEEeeeeeecccccCCcccccccHH
Confidence 467889999999999999999999987654 5666 678999999999999999999999988776667766678899
Q ss_pred HHHHHHHHHHHHHcC-CCCCCCCCCCCeEEEeecCcceEeecCCCceEE---------EEc--cC------CCCceEEEE
Q 011700 316 SARKSAKHAVAAIME-PDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV---------HYG--NF------SGTTFGAYW 377 (479)
Q Consensus 316 ~A~~~g~~aa~~i~~-~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~---------~~~--~~------~~~~~~~~~ 377 (479)
.|..||+.||+||++ ... .....+|..+..+++.+++++|+++.++. .+. +. ....|.++.
T Consensus 338 ~A~~~g~~aa~~i~g~~~~-~~~~~~~~~~~~~~~~~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~i 416 (588)
T 3ics_A 338 PANRQGRMLADIIHGHTDS-LYKGTLGTSVAKVFDLTVATTGLNEKILKRLNIPYEVVHVQANSHAGYYPNATPVLIKLI 416 (588)
T ss_dssp HHHHHHHHHHHHHTTCCSS-CCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCCEEEEEEEESSCTTSTTCCEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCcc-ccCCcccceEEEECCeEEEEecCCHHHHHHcCCCeEEEEEecCCccccCCCCceEEEEEE
Confidence 999999999999998 432 33345677777889999999999875431 111 10 013466665
Q ss_pred c--cCCEEEEEEEeCCC-HHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCC
Q 011700 378 V--NKGRLVGSFLEGGT-KEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQ 428 (479)
Q Consensus 378 ~--~~~~i~G~~~~g~~-~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~ 428 (479)
+ ++++|||+|++|++ ++|+ +.++.||+.++|++||.++. +.|+|+|++
T Consensus 417 ~~~~~~~ilG~~~~g~~~~~e~i~~~~~ai~~~~t~~~l~~~~---~~~~P~~~~ 468 (588)
T 3ics_A 417 FNKDSGKIYGAQTLGRDGVDKRMDVIATAIKANLTVLDLPDLE---LSYAPPYSS 468 (588)
T ss_dssp ECTTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBTTTGGGCC---CCCSTTTCC
T ss_pred EECCCCeEEEEEEEcCCcHHHHHHHHHHHHHcCCCHHHhhhhh---hccCCCccc
Confidence 5 68999999999975 7776 66999999999999999987 567676654
No 16
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=100.00 E-value=9.2e-52 Score=424.19 Aligned_cols=402 Identities=22% Similarity=0.275 Sum_probs=315.3
Q ss_pred CeEEEECCchHHHHHHHHHHHc--CCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700 5 FVYVIVGGGVAAGYAALEFTKR--GVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN 82 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~--g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (479)
+||||||||+||++||..|+++ |.+ |+|||+++...|..+.+.. ++... .+.. ........++++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~---V~lie~~~~~~~~~~~~~~-~~~~~----~~~~-----~~~~~~~~~~~~ 67 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAE---IQWYEKGDFISFLSAGMQL-YLEGK----VKDV-----NSVRYMTGEKME 67 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSE---EEEEESSSSSSBCGGGHHH-HHTTS----SCCG-----GGSBSCCHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCe---EEEEECCCccCcccccchh-hhcCc----cCCH-----HHhhcCCHHHHH
Confidence 4899999999999999999997 554 9999999865553322211 11100 0000 111234567788
Q ss_pred HcCcEEEeCceEEEEECCCcEEEeCC---Cc--EEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHH
Q 011700 83 EHGIELVLGTRVKSADVRRKTLVTAT---GE--TISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVM 157 (479)
Q Consensus 83 ~~gv~~~~~~~v~~i~~~~~~v~~~~---g~--~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l 157 (479)
+.+++++.++++..++.+.+++.+.+ |+ +++||+||||||++|..|++ ||.+.+++++++++.++..+.+.+
T Consensus 68 ~~gv~~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i---~G~~~~~v~~~~~~~~~~~l~~~~ 144 (447)
T 1nhp_A 68 SRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDI---PGKDLDNIYLMRGRQWAIKLKQKT 144 (447)
T ss_dssp HTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCS---TTTTSBSEECCCHHHHHHHHHHHH
T ss_pred HCCCEEEECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcCCCCC---CCCCCCCeEEECCHHHHHHHHHHh
Confidence 89999999999999999988887753 54 48999999999999988876 666667788888888888887776
Q ss_pred hcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCc
Q 011700 158 KSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGK 237 (479)
Q Consensus 158 ~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~ 237 (479)
....+++++|||+|++|+|+|..|++.|.+|+++++.++++++.+++++.+.+.+.+++.||++++++.+++++.+ +.
T Consensus 145 ~~~~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~--~~ 222 (447)
T 1nhp_A 145 VDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD--GR 222 (447)
T ss_dssp TCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECS--SB
T ss_pred hhcCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEcc--Cc
Confidence 5435899999999999999999999999999999999998886689999999999999999999999999999862 44
Q ss_pred EEEEEeCCCcEEeccEEEEecCCCCChhhhhccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHH
Q 011700 238 VVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS 316 (479)
Q Consensus 238 v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~ 316 (479)
+..+.+ +++++++|.|++|+|++|++.+++..+.. ++|+|.||+++||+.|+|||+|||+..+....|.+..+.++..
T Consensus 223 v~~v~~-~~~~i~~d~vi~a~G~~p~~~~~~~~~~~~~~G~i~Vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~ 301 (447)
T 1nhp_A 223 VQKVVT-DKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATN 301 (447)
T ss_dssp CCEEEE-SSCEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECGGGSCEEEGGGTEEECCCCHHH
T ss_pred EEEEEE-CCCEEECCEEEECcCCCCChHHHHhhhhhcCCCcEEECccccCCCCCEEEeeeEEEeeccCCCCceechhHHH
Confidence 434555 56789999999999999999877655555 5688999999999999999999999876655565556678999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEE---------EEccC--------CCCceEEEEc-
Q 011700 317 ARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV---------HYGNF--------SGTTFGAYWV- 378 (479)
Q Consensus 317 A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~---------~~~~~--------~~~~~~~~~~- 378 (479)
|..||+.|++||++... ......|+.++.+++++++.+|+++.++. .+.+. ....|.++..
T Consensus 302 A~~qg~~aa~~i~g~~~-~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 380 (447)
T 1nhp_A 302 ARKQGRFAVKNLEEPVK-PFPGVQGSSGLAVFDYKFASTGINEVMAQKLGKETKAVTVVEDYLMDFNPDKQKAWFKLVYD 380 (447)
T ss_dssp HHHHHHHHHHTSSSCCC-CCCCBCCCEEEEETTEEEEEEECCHHHHHHHTCCCEEEEEEEESSCTTCTTCCEEEEEEEEC
T ss_pred HHHHHHHHHHhhcCCCC-CCCCccccEEEEECCeeeEEecCCHHHHHHcCCceEEEEEEcCCccccCCCCceEEEEEEEE
Confidence 99999999999997542 12234577788999999999998764321 11111 1123555554
Q ss_pred -cCCEEEEEEEeCCC-HHHH-HHHHHHHHcCCCcCcHHHH-hhcCCCccccc
Q 011700 379 -NKGRLVGSFLEGGT-KEEY-EAIAKATRLQPVVEDLAEL-ETQGLGFALAV 426 (479)
Q Consensus 379 -~~~~i~G~~~~g~~-~~e~-~~~~~~i~~~~~~~dl~~~-~~~~~~~a~~~ 426 (479)
++++|+|+|++|++ +.|+ +.++.+|+.++|++|+.++ ...||++++.+
T Consensus 381 ~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~ 432 (447)
T 1nhp_A 381 PETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYADFFFQPAFDKPW 432 (447)
T ss_dssp TTTCBEEEEEEEESSCCTTHHHHHHHHHHTTCBHHHHHTCCCCCCTTTCCSS
T ss_pred CCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhcceecCCCCCCcc
Confidence 47999999999998 8886 6689999999999999886 55666666554
No 17
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=100.00 E-value=3.1e-50 Score=416.18 Aligned_cols=402 Identities=22% Similarity=0.327 Sum_probs=313.5
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH-H
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN-E 83 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 83 (479)
+||||||||+||++||..|++++. ..+|+|||+++...|..+.++. ++... .+.. ........+++. .
T Consensus 37 ~dvvIIG~G~aGl~aA~~l~~~~~-g~~V~lie~~~~~~~~~~~~~~-~~~~~----~~~~-----~~l~~~~~~~~~~~ 105 (480)
T 3cgb_A 37 MNYVIIGGDAAGMSAAMQIVRNDE-NANVVTLEKGEIYSYAQCGLPY-VISGA----IAST-----EKLIARNVKTFRDK 105 (480)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCT-TCEEEEECSSSCCSBCGGGHHH-HHTTS----SSCG-----GGGBSSCHHHHHHT
T ss_pred ceEEEECCCHHHHHHHHHHHhhCc-CCcEEEEECCCCCCCCCCCcch-hhcCC----cCCH-----HHhhhcCHHHHHhh
Confidence 699999999999999999998621 2349999999876665443321 11100 0000 111233455564 4
Q ss_pred cCcEEEeCceEEEEECCCcEEEeCC---Cc--EEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHh
Q 011700 84 HGIELVLGTRVKSADVRRKTLVTAT---GE--TISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMK 158 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~~~---g~--~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~ 158 (479)
.+++++.+++|..++.+.+.+.+.+ |+ ++.||+||||||++|+.|++ +|.+.++++++++..++.++.+.+.
T Consensus 106 ~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i---~G~~~~~v~~~~~~~~~~~l~~~~~ 182 (480)
T 3cgb_A 106 YGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEW---EGRDLQGVHLLKTIPDAERILKTLE 182 (480)
T ss_dssp TCCEEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCC---BTTTSBTEECCSSHHHHHHHHHHHH
T ss_pred cCCEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCcccCCCC---CCccCCCEEEeCCHHHHHHHHHHhh
Confidence 5999999989999999888887753 65 79999999999999988876 6666577888899998888877776
Q ss_pred cCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcE
Q 011700 159 SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV 238 (479)
Q Consensus 159 ~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v 238 (479)
...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.||++++++.+++++. ++.+
T Consensus 183 ~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~--~~~v 259 (480)
T 3cgb_A 183 TNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTI-YDGDMAEYIYKEADKHHIEILTNENVKAFKG--NERV 259 (480)
T ss_dssp SSCCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSS-SCHHHHHHHHHHHHHTTCEEECSCCEEEEEE--SSBE
T ss_pred hcCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhc-CCHHHHHHHHHHHHHcCcEEEcCCEEEEEEc--CCcE
Confidence 446899999999999999999999999999999999998885 8999999999999999999999999999986 3455
Q ss_pred EEEEeCCCcEEeccEEEEecCCCCChhhhhc-cccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHH
Q 011700 239 VAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS 316 (479)
Q Consensus 239 ~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~ 316 (479)
..+.+. +.++++|.|++|+|++|++++++. ++.. ++|+|.||+++||++|+|||+|||+..+....|.+.+++++..
T Consensus 260 ~~v~~~-~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~~~G~I~Vd~~~~ts~p~IyA~GD~~~~~~~~~g~~~~~~~~~~ 338 (480)
T 3cgb_A 260 EAVETD-KGTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDCATHYHVIKEIHDHIPIGTT 338 (480)
T ss_dssp EEEEET-TEEEECSEEEECSCEEESCGGGTTSCCCBCTTSCBCCCTTSBCSSTTEEECGGGBCEEBTTTCSEECCCCHHH
T ss_pred EEEEEC-CCEEEcCEEEECcCCCcChHHHHhCCcccCCCCCEEECCCccCCCCCEEEeeeEEEecCCCCCcceecchHHH
Confidence 456554 458999999999999999987654 4665 5789999999999999999999999877655566555678999
Q ss_pred HHHHHHHHHHHHcCCCCCCCC-CCCCeEEEeecCcceEeecCCCceE---------EEEccC--------CCCceEEEEc
Q 011700 317 ARKSAKHAVAAIMEPDKTDKF-DYLPFFYSRVFTLSWQFYGDNVGEV---------VHYGNF--------SGTTFGAYWV 378 (479)
Q Consensus 317 A~~~g~~aa~~i~~~~~~~~~-~~~p~~~~~~~~~~~~~~G~~~~~~---------~~~~~~--------~~~~~~~~~~ 378 (479)
|..||+.||+||++.. ..+ ++.++.++.+++++++++|+++.++ ..+... ....|.++++
T Consensus 339 A~~qg~~aa~~i~g~~--~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~kl~~ 416 (480)
T 3cgb_A 339 ANKQGRLAGLNMLDKR--RAFKGTLGTGIIKFMNLTLARTGLNEKEAKGLHIPYKTVKVDSTNMAGYYPNAKPLYLKLLY 416 (480)
T ss_dssp HHHHHHHHHHHHTTCC--CCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCEEEEEEEEESSCTTSTTCCEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCC--ccCCCccceeEEEECCcEEEEeCCCHHHHHHcCCceEEEEEecCCcccccCCCceEEEEEEE
Confidence 9999999999999754 233 2344567889999999999876432 111111 1123555555
Q ss_pred --cCCEEEEEEEeCCC-HHHH-HHHHHHHHcCCCcCcHHHH-hhcCCCccccc
Q 011700 379 --NKGRLVGSFLEGGT-KEEY-EAIAKATRLQPVVEDLAEL-ETQGLGFALAV 426 (479)
Q Consensus 379 --~~~~i~G~~~~g~~-~~e~-~~~~~~i~~~~~~~dl~~~-~~~~~~~a~~~ 426 (479)
++++|+|+|++|+. +.|+ +.++.||+.++|++||.++ ...||++++.+
T Consensus 417 ~~~~~~ilG~~~vg~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~ 469 (480)
T 3cgb_A 417 RSDTKQLLGGQVIGEEGVDKRIDVIAMALFNKMSIHDLEDVDLSYAPPYNSVW 469 (480)
T ss_dssp ETTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCCCCCCTTTCCSS
T ss_pred ECCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCHHHHhhcccccCCCCCCch
Confidence 58999999999998 8887 6689999999999999886 34556655443
No 18
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=100.00 E-value=4.7e-52 Score=433.27 Aligned_cols=416 Identities=17% Similarity=0.193 Sum_probs=303.5
Q ss_pred CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC------CCCcccccc------cC--------------
Q 011700 2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPY------ERPALSKGY------LL-------------- 55 (479)
Q Consensus 2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~------~~~~l~~~~------~~-------------- 55 (479)
+.+|||+||||||||++||..|+++|.+ |+|||+++..++ ...++..++ +.
T Consensus 30 ~~~~DVvVIGgGpaGl~aA~~la~~G~~---V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~ 106 (519)
T 3qfa_A 30 SYDYDLIIIGGGSGGLAAAKEAAQYGKK---VMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNY 106 (519)
T ss_dssp SCSEEEEEECCSHHHHHHHHHHHHTTCC---EEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCCe---EEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhc
Confidence 3468999999999999999999999987 999998642211 111110000 00
Q ss_pred CCCCCC--CCCccccc------CCcccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCc--EEEeceEEeecCCCc
Q 011700 56 PEAPAR--LPSFHTCV------GANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGE--TISYKILIIATGARA 125 (479)
Q Consensus 56 ~~~~~~--~~~~~~~~------~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~--~~~~d~lviAtG~~~ 125 (479)
...... ...+.... ...........++..+++++.+ .+..++.....+...+|+ ++.||+||||||++|
T Consensus 107 g~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g-~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs~p 185 (519)
T 3qfa_A 107 GWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENA-YGQFIGPHRIKATNNKGKEKIYSAERFLIATGERP 185 (519)
T ss_dssp TBCCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEETTEEEEECTTCCCCEEEEEEEEECCCEEE
T ss_pred CcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeeCCEEEEEcCCCCEEEEECCEEEEECCCCc
Confidence 000000 00000000 0000001123455679999988 577777766666666664 799999999999999
Q ss_pred ccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHH
Q 011700 126 LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK 205 (479)
Q Consensus 126 ~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~ 205 (479)
+.|++ +|.+ ..++ +..++.. +. ..+++++|||+|++|+|+|..|+++|.+||++++. .+++. ++++
T Consensus 186 ~~p~i---~G~~-~~~~---t~~~~~~----l~-~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~-~~l~~-~d~~ 251 (519)
T 3qfa_A 186 RYLGI---PGDK-EYCI---SSDDLFS----LP-YCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRG-FDQD 251 (519)
T ss_dssp CCCCC---TTHH-HHCB---CHHHHTT----CS-SCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTT-SCHH
T ss_pred CCCCC---CCcc-CceE---cHHHHhh----hh-hcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc-ccccc-CCHH
Confidence 98876 5532 1121 2222211 11 24789999999999999999999999999999985 66665 8999
Q ss_pred HHHHHHHHHHhCCcEEEcCCceEEEEEcCC---CcE-EEEEeCCCc---EEeccEEEEecCCCCChhhh---hccccc--
Q 011700 206 IASYYEEYYKSKGVKFVKGTVLSSFDVDSN---GKV-VAVNLRDGN---RLPTDMVVVGIGIRPNTSLF---EGQLTL-- 273 (479)
Q Consensus 206 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~---g~v-~~v~~~~g~---~i~~D~Vi~a~G~~p~~~l~---~~~~~~-- 273 (479)
+.+.+.+.++++||++++++.+.+++..++ +.+ ..+...++. ++++|.|++++|++|+++++ ..++..
T Consensus 252 ~~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~ 331 (519)
T 3qfa_A 252 MANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINE 331 (519)
T ss_dssp HHHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCT
T ss_pred HHHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcC
Confidence 999999999999999999988888875332 222 223345552 57899999999999999853 335666
Q ss_pred ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCC-CCCCCCCeEEEeecCcce
Q 011700 274 EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSW 352 (479)
Q Consensus 274 ~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~p~~~~~~~~~~~ 352 (479)
++|+|.||+++||++|+|||+|||+.... .++..|..||++||+||++.... .++..+|+ ..+++.++
T Consensus 332 ~~G~I~Vd~~~~Ts~~~IyA~GD~~~g~~---------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~p~~ 400 (519)
T 3qfa_A 332 KTGKIPVTDEEQTNVPYIYAIGDILEDKV---------ELTPVAIQAGRLLAQRLYAGSTVKCDYENVPT--TVFTPLEY 400 (519)
T ss_dssp TTCCBCCCTTSBCSSTTEEECGGGBSSSC---------CCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCE--EECSSSCE
T ss_pred CCCeEeeCCCCccCCCCEEEEEeccCCCC---------ccHHHHHHHHHHHHHHHcCCCCccCCCCcCcE--EEECCCce
Confidence 36889999999999999999999984221 46778999999999999976532 46666775 55678899
Q ss_pred EeecCCCceEEE-------------Ecc--------CCCCceEEEEc---cCCEEEEEEEeCCCHHHH-HHHHHHHHcCC
Q 011700 353 QFYGDNVGEVVH-------------YGN--------FSGTTFGAYWV---NKGRLVGSFLEGGTKEEY-EAIAKATRLQP 407 (479)
Q Consensus 353 ~~~G~~~~~~~~-------------~~~--------~~~~~~~~~~~---~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~ 407 (479)
+.+|+++.++.. +.. .....|.++.+ ++++|||+|++|+++.|+ +.++.||++++
T Consensus 401 a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~ilGa~i~g~~a~e~i~~~~~ai~~~~ 480 (519)
T 3qfa_A 401 GACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGL 480 (519)
T ss_dssp EEEECCHHHHHHHHCGGGEEEEEEEECCHHHHTTTCCTTTEEEEEEEETTTTCEEEEEEEESTTHHHHHHHHHHHHHTTC
T ss_pred EEecCCHHHHHhhCCCCCEEEEEEeccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCC
Confidence 999998754321 110 01245776655 269999999999999998 56899999999
Q ss_pred CcCcHHHHhhcCCCcccccCCCCCCCCCCCCCccccccc
Q 011700 408 VVEDLAELETQGLGFALAVSQKPLPSTPVDGKTVPGLVL 446 (479)
Q Consensus 408 ~~~dl~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 446 (479)
|++||.+++..||+++|.+.+..++|+||.+....|||+
T Consensus 481 t~~~l~~~~~~hPt~~E~~~~~~~~~~~~~~~~~~~~~~ 519 (519)
T 3qfa_A 481 TKKQLDSTIGIHPVCAEVFTTLSVTKRSGASILQAGSCG 519 (519)
T ss_dssp BHHHHHHSCCCTTCGGGGGGGCCCBTTTTCCCCCCCTTC
T ss_pred CHHHHhccccCCCChHHHHHHHHhhhhcCCChhhccCCC
Confidence 999999999999999999999999999999888999985
No 19
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=100.00 E-value=2.4e-51 Score=425.52 Aligned_cols=411 Identities=17% Similarity=0.226 Sum_probs=302.1
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHH-cCCCCCcEEEEcCCCC------CCCCCCcc-----c-ccccCCCC----CCCCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTK-RGVPPGELCIISEEPV------APYERPAL-----S-KGYLLPEA----PARLP 63 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~-~g~~~~~V~lie~~~~------~~~~~~~l-----~-~~~~~~~~----~~~~~ 63 (479)
|++++||+||||||||++||.+|++ +|++ |+|||+... ..+...++ + +.++.... ....+
T Consensus 4 M~~~~dvvVIGgG~aGl~aA~~la~~~G~~---V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~ 80 (495)
T 2wpf_A 4 MSKAFDLVVIGAGSGGLEAGWNAATLYGKR---VAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESA 80 (495)
T ss_dssp CCEEEEEEEECCSHHHHHHHHHHHHHHCCC---EEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCEEEECCChhHHHHHHHHHHhcCCe---EEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHH
Confidence 6667999999999999999999999 8987 999993110 00111111 0 00000000 00000
Q ss_pred CcccccCC--------cc-----------cCCCHhHHHHc-CcEEEeCceEEEEECCCcEEEeC---C-----CcEEEec
Q 011700 64 SFHTCVGA--------NE-----------ERLTPKWYNEH-GIELVLGTRVKSADVRRKTLVTA---T-----GETISYK 115 (479)
Q Consensus 64 ~~~~~~~~--------~~-----------~~~~~~~~~~~-gv~~~~~~~v~~i~~~~~~v~~~---~-----g~~~~~d 115 (479)
.+...... .. .......+++. +++++.+ .+..++ .+++.+. + ++++.||
T Consensus 81 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g-~~~~i~--~~~v~v~~~~~~~~~~~~~~~~d 157 (495)
T 2wpf_A 81 GFGWEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLG-WGSLES--KNVVVVRETADPKSAVKERLQAD 157 (495)
T ss_dssp TTTEECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEES-EEEEEE--TTEEEEESSSSTTSCEEEEEEEE
T ss_pred hcCcccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe-EEEEee--CCEEEEeecCCccCCCCeEEEcC
Confidence 00000000 00 00112234567 9999998 466665 3677765 4 6789999
Q ss_pred eEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhC---CCeEEEEe
Q 011700 116 ILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN---KINVTMVF 192 (479)
Q Consensus 116 ~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~---g~~Vtlv~ 192 (479)
+||||||++|+.|++ +|.+ .+++.. ++.. +.. .+++++|||+|++|+|+|..|.++ |.+||+++
T Consensus 158 ~lViATGs~p~~p~i---~G~~--~~~~~~---~~~~----~~~-~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~ 224 (495)
T 2wpf_A 158 HILLATGSWPQMPAI---PGIE--HCISSN---EAFY----LPE-PPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCY 224 (495)
T ss_dssp EEEECCCEEECCCCC---TTGG--GCEEHH---HHTT----CSS-CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred EEEEeCCCCcCCCCC---CCcc--ccccHH---HHHh----hhh-cCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEE
Confidence 999999999998876 5542 343322 2211 111 478999999999999999999999 99999999
Q ss_pred ecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhh---hc
Q 011700 193 PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF---EG 269 (479)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~---~~ 269 (479)
+.+++++. +++++.+.+.+.++++||++++++.|++++.++++. ..+.+.+|+++++|.|++|+|++|+++.+ +.
T Consensus 225 ~~~~~l~~-~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~-~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~ 302 (495)
T 2wpf_A 225 RNNLILRG-FDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGS-KHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNV 302 (495)
T ss_dssp SSSSSCTT-SCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSC-EEEEETTSCEEEESEEEECSCEEECCGGGTGGGT
T ss_pred cCCccccc-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCce-EEEEECCCcEEEcCEEEECCCCcccccccchhhc
Confidence 99999986 899999999999999999999999999998743333 46788899999999999999999999732 33
Q ss_pred cccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEee
Q 011700 270 QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRV 347 (479)
Q Consensus 270 ~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~p~~~~~~ 347 (479)
++.. ++|+|.||+++||++|+|||+|||+..+ .++..|..||+.||.||++... ..+|..+|+ ..+
T Consensus 303 gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~ 370 (495)
T 2wpf_A 303 GVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRL----------MLTPVAINEGAALVDTVFGNKPRKTDHTRVAS--AVF 370 (495)
T ss_dssp TCCBCTTSSBCCCTTCBCSSTTEEECGGGGCSC----------CCHHHHHHHHHHHHHHHHSSCCCCCCCSSCEE--EEC
T ss_pred CccCCCCCCEEECCCCccCCCCEEEEeccCCCc----------cCHHHHHHHHHHHHHHhcCCCCCcCCCCCCCE--EEE
Confidence 5666 4788999999999999999999999743 4678899999999999998542 245666664 556
Q ss_pred cCcceEeecCCCceE------EEEc------------cCCCCce-EEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHc
Q 011700 348 FTLSWQFYGDNVGEV------VHYG------------NFSGTTF-GAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRL 405 (479)
Q Consensus 348 ~~~~~~~~G~~~~~~------~~~~------------~~~~~~~-~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~ 405 (479)
++.+++++|+++.++ +... ......| .++.+ ++++|+|+|++|+++.|+ +.++.||+.
T Consensus 371 ~~~~~a~vGl~e~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~ 450 (495)
T 2wpf_A 371 SIPPIGTCGLIEEVAAKEFEKVAVYMSSFTPLMHNISGSKYKKFVAKIVTNHSDGTVLGVHLLGDGAPEIIQAVGVCLRL 450 (495)
T ss_dssp CSSCEEEEECCHHHHHHHSSEEEEEEEEECCTHHHHHSCTTCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHT
T ss_pred CCCCeEEEeCCHHHHHhcCCCEEEEEEecCchhhhhhcCCCcEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHC
Confidence 788999999986543 1110 1122457 77665 589999999999999997 668999999
Q ss_pred CCCcCcHHHHhhcCCCcccccCCCC-CCCCCCCCCccccc
Q 011700 406 QPVVEDLAELETQGLGFALAVSQKP-LPSTPVDGKTVPGL 444 (479)
Q Consensus 406 ~~~~~dl~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~ 444 (479)
++|++||.+++..||++++.+.+.. .++.||.+....||
T Consensus 451 ~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~~~~~~~~~~~ 490 (495)
T 2wpf_A 451 NAKISDFYNTIGVHPTSAEELCSMRTPSYYYVKGEKMEKL 490 (495)
T ss_dssp TCBHHHHHHSCCCSSCSGGGGGSCCSCSEEEETTEEESSC
T ss_pred CCCHHHHhhcccCCCChHHHHHHHHHHhhhcCCchhhcCC
Confidence 9999999999999999999998875 67777766666666
No 20
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=100.00 E-value=2.8e-49 Score=394.75 Aligned_cols=344 Identities=24% Similarity=0.389 Sum_probs=278.0
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH 84 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (479)
.|++|||||+||++||..|+++| + |+|||+++..+|.++.+++.+. .. ... ........+++++.
T Consensus 9 ~~vvIIGgG~AGl~aA~~l~~~g-~---V~lie~~~~~~~~~~~l~~~~~-g~--~~~--------~~~~~~~~~~~~~~ 73 (367)
T 1xhc_A 9 SKVVIVGNGPGGFELAKQLSQTY-E---VTVIDKEPVPYYSKPMLSHYIA-GF--IPR--------NRLFPYSLDWYRKR 73 (367)
T ss_dssp CEEEEECCSHHHHHHHHHHTTTS-E---EEEECSSSSCCCCSTTHHHHHT-TS--SCG--------GGGCSSCHHHHHHH
T ss_pred CcEEEECCcHHHHHHHHHHhhcC-C---EEEEECCCCCccccchhHHHHh-CC--CCH--------HHhccCCHHHHHhC
Confidence 69999999999999999999877 4 9999999887777776654221 10 000 11223467788899
Q ss_pred CcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCC
Q 011700 85 GIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGN 164 (479)
Q Consensus 85 gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~ 164 (479)
+++++.+++|..++++.++|. .+++++.||+||||||++|+.|++ +| .+++++++++.++..+.+.+.. +++
T Consensus 74 ~v~~~~g~~v~~id~~~~~V~-~~g~~~~~d~lViATGs~p~~p~i---~G--~~~v~~~~~~~~~~~l~~~~~~--~~~ 145 (367)
T 1xhc_A 74 GIEIRLAEEAKLIDRGRKVVI-TEKGEVPYDTLVLATGARAREPQI---KG--KEYLLTLRTIFDADRIKESIEN--SGE 145 (367)
T ss_dssp TEEEECSCCEEEEETTTTEEE-ESSCEEECSEEEECCCEEECCCCS---BT--GGGEECCCSHHHHHHHHHHHHH--HSE
T ss_pred CcEEEECCEEEEEECCCCEEE-ECCcEEECCEEEECCCCCCCCCCC---CC--cCCEEEEcCHHHHHHHHHHhhc--CCc
Confidence 999999988999999988888 678889999999999999998876 55 3578888888888888766542 589
Q ss_pred EEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC
Q 011700 165 AVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 244 (479)
Q Consensus 165 vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~ 244 (479)
++|||+|++|+|+|..|+++|.+||++++.+++++ +++++.+.+.+.++++||++++++++++++. + .+.+.
T Consensus 146 vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~--~----~v~~~ 217 (367)
T 1xhc_A 146 AIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--LDEELSNMIKDMLEETGVKFFLNSELLEANE--E----GVLTN 217 (367)
T ss_dssp EEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT--CCHHHHHHHHHHHHHTTEEEECSCCEEEECS--S----EEEET
T ss_pred EEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc--CCHHHHHHHHHHHHHCCCEEEcCCEEEEEEe--e----EEEEC
Confidence 99999999999999999999999999999999888 8999999999999999999999999999962 2 46778
Q ss_pred CCcEEeccEEEEecCCCCChhhhhc-ccccccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHH
Q 011700 245 DGNRLPTDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKH 323 (479)
Q Consensus 245 ~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~ 323 (479)
+|+ +++|.|++|+|++|++++++. ++..+ ++|.||+++||+.|+|||+|||+..+... ..++..|..||+.
T Consensus 218 ~g~-i~~D~vi~a~G~~p~~~ll~~~gl~~~-~gi~Vd~~~~t~~~~IyA~GD~a~~~~~~------~~~~~~A~~qg~~ 289 (367)
T 1xhc_A 218 SGF-IEGKVKICAIGIVPNVDLARRSGIHTG-RGILIDDNFRTSAKDVYAIGDCAEYSGII------AGTAKAAMEQARV 289 (367)
T ss_dssp TEE-EECSCEEEECCEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEBTTBC------CCSHHHHHHHHHH
T ss_pred CCE-EEcCEEEECcCCCcCHHHHHhCCCCCC-CCEEECCCcccCCCCEEEeEeeeecCCCC------ccHHHHHHHHHHH
Confidence 887 999999999999999987654 45555 45999999999999999999999753221 1468899999999
Q ss_pred HHHHHcCCCCCCCCCC-CCeEEEeecCcceEeecCCCceEEEEccCCCCceEEEEccCCEEEEEEEeCCCHH
Q 011700 324 AVAAIMEPDKTDKFDY-LPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKE 394 (479)
Q Consensus 324 aa~~i~~~~~~~~~~~-~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~g~~~~ 394 (479)
||+||++.. ..|+. +|+.+..+++.+++++|+++.++... ..|.+++.++++|+|++++|+.+.
T Consensus 290 aa~~i~g~~--~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~-----~~~~k~~~~~~~ilG~~~~g~~~~ 354 (367)
T 1xhc_A 290 LADILKGEP--RRYNFKFRSTVFKFGKLQIAIIGNTKGEGKWI-----EDNTKVFYENGKIIGAVVFNDIRK 354 (367)
T ss_dssp HHHHHTTCC--CCCCSSCCEEEEEETTEEEEEEECCSSCEEEE-----ETTEEEEC-----CEEEEESCHHH
T ss_pred HHHHhcCCC--ccCCCCCCceEEEECCceEEEECCCCCCCccc-----ceEEEEEEECCEEEEEEEECChHH
Confidence 999999864 34555 45445678999999999988765433 357778888899999999997654
No 21
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=100.00 E-value=5.1e-49 Score=395.97 Aligned_cols=369 Identities=24% Similarity=0.335 Sum_probs=289.8
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccC-CCHh
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEER-LTPK 79 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 79 (479)
|+.++||||||||+||++||..|+++|.+ .+|+++|+++...|.++.++..+.... .+ ..... ....
T Consensus 1 M~~~~dvvIIG~G~aGl~aA~~l~~~g~~-~~V~lie~~~g~~~~~~~l~~~~~~~~----~~-------~~~~~~~~~~ 68 (384)
T 2v3a_A 1 MSERAPLVIIGTGLAGYNLAREWRKLDGE-TPLLMITADDGRSYSKPMLSTGFSKNK----DA-------DGLAMAEPGA 68 (384)
T ss_dssp ---CCCEEEECCSHHHHHHHHHHHTTCSS-SCEEEECSSCCCEECGGGGGGTTTTTC----CH-------HHHEEECHHH
T ss_pred CCCCCcEEEECChHHHHHHHHHHHhhCCC-CCEEEEECCCCCccCcccccHHHhCCC----CH-------HHhhccCHHH
Confidence 77789999999999999999999998853 459999999766666655544321100 00 01111 2345
Q ss_pred HHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhc
Q 011700 80 WYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKS 159 (479)
Q Consensus 80 ~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~ 159 (479)
++++.+++++.++++..++.+.+++.+.+ .++.||+||+|||++|..|++ +|.+.+++++.+++.++..+...+.
T Consensus 69 ~~~~~~v~~~~~~~v~~i~~~~~~v~~~~-~~~~~d~lviAtG~~p~~p~i---~g~~~~~v~~~~~~~~~~~~~~~~~- 143 (384)
T 2v3a_A 69 MAEQLNARILTHTRVTGIDPGHQRIWIGE-EEVRYRDLVLAWGAEPIRVPV---EGDAQDALYPINDLEDYARFRQAAA- 143 (384)
T ss_dssp HHHHTTCEEECSCCCCEEEGGGTEEEETT-EEEECSEEEECCCEEECCCCC---BSTTTTCEEECSSHHHHHHHHHHHT-
T ss_pred HHHhCCcEEEeCCEEEEEECCCCEEEECC-cEEECCEEEEeCCCCcCCCCC---CCcCcCCEEEECCHHHHHHHHHhhc-
Confidence 66788999999888999998888888864 479999999999999998876 6655567999999998888777665
Q ss_pred CCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEE
Q 011700 160 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV 239 (479)
Q Consensus 160 ~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~ 239 (479)
.+++++|||+|++|+|+|..|.+.|.+|+++++.+++++..+++++.+.+.+.+++.||++++++++++++.+ ++. .
T Consensus 144 -~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~-~ 220 (384)
T 2v3a_A 144 -GKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKA-GEG-L 220 (384)
T ss_dssp -TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEE-TTE-E
T ss_pred -cCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEec-CCE-E
Confidence 3899999999999999999999999999999999999887679999999999999999999999999999873 332 4
Q ss_pred EEEeCCCcEEeccEEEEecCCCCChhhhh-cccccccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHH
Q 011700 240 AVNLRDGNRLPTDMVVVGIGIRPNTSLFE-GQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSAR 318 (479)
Q Consensus 240 ~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~-~~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~ 318 (479)
.+.+.+|+++++|.|++|+|++|++++++ .++..++| |.||+++||+.|+|||+|||+..+.. ..+++..|.
T Consensus 221 ~v~~~~g~~i~~d~vv~a~G~~p~~~l~~~~g~~~~~g-i~vd~~~~t~~~~IyA~GD~~~~~~~------~~~~~~~a~ 293 (384)
T 2v3a_A 221 EAHLSDGEVIPCDLVVSAVGLRPRTELAFAAGLAVNRG-IVVDRSLRTSHANIYALGDCAEVDGL------NLLYVMPLM 293 (384)
T ss_dssp EEEETTSCEEEESEEEECSCEEECCHHHHHTTCCBSSS-EEECTTCBCSSTTEEECGGGEEETTB------CCCSHHHHH
T ss_pred EEEECCCCEEECCEEEECcCCCcCHHHHHHCCCCCCCC-EEECCCCCCCCCCEEEeeeeeeECCC------CcchHHHHH
Confidence 67888999999999999999999998764 35666656 99999999999999999999975422 125678899
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCc---eEEEEccCCCCceEEEEc-cCCEEEEEEEeCCCHH
Q 011700 319 KSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG---EVVHYGNFSGTTFGAYWV-NKGRLVGSFLEGGTKE 394 (479)
Q Consensus 319 ~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~---~~~~~~~~~~~~~~~~~~-~~~~i~G~~~~g~~~~ 394 (479)
.||+.+|+||++.....+|..+|+.+. ...+++..+|.... +....++. ..|.+++. ++++|+|+|++|++++
T Consensus 294 ~~g~~~a~~i~g~~~~~~~~~~p~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~--~g~~~~~~~~~~~i~G~~~~g~~a~ 370 (384)
T 2v3a_A 294 ACARALAQTLAGNPSQVAYGPMPVTVK-TPACPLVVSPPPRGMDGQWLVEGSG--TDLKVLCRDTAGRVIGYALTGAAVN 370 (384)
T ss_dssp HHHHHHHHHHTTCCCCCCCCCCCEEEC-CTTSCEEEECCCTTCCCEEEEEEET--TEEEEEEECTTSCEEEEEEEGGGGG
T ss_pred HHHHHHHHHhcCCCccCCCCCcceEEE-ECCeeEEEecCCCCCCceEEEEecC--CcEEEEEEccCCEEEEEEEECcchH
Confidence 999999999998654455667786432 13467888887543 33334443 34666555 5899999999999999
Q ss_pred HHHHH
Q 011700 395 EYEAI 399 (479)
Q Consensus 395 e~~~~ 399 (479)
|+..+
T Consensus 371 e~~~~ 375 (384)
T 2v3a_A 371 EKLAL 375 (384)
T ss_dssp GHHHH
T ss_pred HHHHH
Confidence 87543
No 22
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-49 Score=411.16 Aligned_cols=398 Identities=15% Similarity=0.188 Sum_probs=292.3
Q ss_pred CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCcccc-cccCC----CCCCCCCCccccc-----
Q 011700 2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YERPALSK-GYLLP----EAPARLPSFHTCV----- 69 (479)
Q Consensus 2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~~~~l~~-~~~~~----~~~~~~~~~~~~~----- 69 (479)
++++||+|||||+||++||..|++.|.+ |+|||+++... .+..+++. .++.. ........+....
T Consensus 9 ~~~~dVvVIGgG~aGl~aA~~l~~~g~~---V~liE~~~~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~ 85 (479)
T 2hqm_A 9 TKHYDYLVIGGGSGGVASARRAASYGAK---TLLVEAKALGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLD 85 (479)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHHTSCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCS
T ss_pred cccCCEEEEcCCHHHHHHHHHHHHCCCc---EEEEeCCCcCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCcccccccc
Confidence 3468999999999999999999999887 99999985210 00001100 00000 0000000000000
Q ss_pred ----CCc--------------ccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCc--EEEeceEEeecCCCcccc-
Q 011700 70 ----GAN--------------EERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGE--TISYKILIIATGARALKL- 128 (479)
Q Consensus 70 ----~~~--------------~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~--~~~~d~lviAtG~~~~~~- 128 (479)
..+ ....+...+++.+++++.+ .+..++.....+...+++ ++.||+||||||++|..|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~ 164 (479)
T 2hqm_A 86 KEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFG-WARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPE 164 (479)
T ss_dssp GGGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEE-EEEECTTSCEEEEESSSCCEEEEEEEEEECCCEEECCCT
T ss_pred cccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCCC
Confidence 000 0001123455789999988 466676655556666776 899999999999999887
Q ss_pred cccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHH
Q 011700 129 EEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIAS 208 (479)
Q Consensus 129 ~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~ 208 (479)
++ +|.+ .++ +..+... +. ..+++++|||+|++|+|+|..|.++|.+|+++++.+++++. +++++.+
T Consensus 165 ~i---~g~~--~~~---~~~~~~~----l~-~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~ 230 (479)
T 2hqm_A 165 NI---PGFE--LGT---DSDGFFR----LE-EQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRK-FDECIQN 230 (479)
T ss_dssp TS---TTGG--GSB---CHHHHHH----CS-SCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHH
T ss_pred CC---CCcc--ccc---chHHHhc----cc-ccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccc-cCHHHHH
Confidence 66 5542 222 2222222 12 25799999999999999999999999999999999999886 8999999
Q ss_pred HHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC-cEEeccEEEEecCCCCChhh-hh-ccccc-ccCcEEEcCcc
Q 011700 209 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGIRPNTSL-FE-GQLTL-EKGGIKVTGRL 284 (479)
Q Consensus 209 ~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g-~~i~~D~Vi~a~G~~p~~~l-~~-~~~~~-~~g~i~Vd~~l 284 (479)
.+.+.+++.||+++++++|++++.++++.+..+.+.+| +++++|.|++|+|++|++.+ ++ .++.. ++|+|.||+++
T Consensus 231 ~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~l~l~~~gl~~~~~G~i~vd~~~ 310 (479)
T 2hqm_A 231 TITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSHDQIIADEYQ 310 (479)
T ss_dssp HHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECCCSSGGGGTCCBCTTSCBCCCTTC
T ss_pred HHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCccccChhhcCceECCCCCEeECCCC
Confidence 99999999999999999999998744443456888898 78999999999999999965 33 35666 57889999999
Q ss_pred cCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCC---C-CCCCCCCCeEEEeecCcceEeecCCCc
Q 011700 285 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD---K-TDKFDYLPFFYSRVFTLSWQFYGDNVG 360 (479)
Q Consensus 285 ~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~---~-~~~~~~~p~~~~~~~~~~~~~~G~~~~ 360 (479)
||+.|+|||+|||++.+ .++..|..||+.||.||++.. . ..+|..+|+ ..+++.+++.+|+++.
T Consensus 311 ~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~p~--~~~~~~~~~~vGl~e~ 378 (479)
T 2hqm_A 311 NTNVPNIYSLGDVVGKV----------ELTPVAIAAGRKLSNRLFGPEKFRNDKLDYENVPS--VIFSHPEAGSIGISEK 378 (479)
T ss_dssp BCSSTTEEECGGGTTSS----------CCHHHHHHHHHHHHHHHHSCGGGTTCCCCCTTCCE--EECCSSCEEEEECCHH
T ss_pred ccCCCCEEEEEecCCCc----------ccHHHHHHHHHHHHHHhcCCCccCcccCCCCCCCe--EEECCCCeEEEeCCHH
Confidence 99999999999998653 457789999999999999754 2 245666775 4456788999998765
Q ss_pred eEE--------EEc------------cCCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhh
Q 011700 361 EVV--------HYG------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELET 417 (479)
Q Consensus 361 ~~~--------~~~------------~~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~ 417 (479)
++. ... ......|.++.+ ++++|+|+|++|++++|+ +.++.||+.++|++||.+++.
T Consensus 379 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~ 458 (479)
T 2hqm_A 379 EAIEKYGKENIKVYNSKFTAMYYAMLSEKSPTRYKIVCAGPNEKVVGLHIVGDSSAEILQGFGVAIKMGATKADFDNCVA 458 (479)
T ss_dssp HHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCC
T ss_pred HHHhcCCCCcEEEEEEeccHHHHHhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcC
Confidence 431 111 011245666655 589999999999999997 568999999999999999999
Q ss_pred cCCCcccccCCC
Q 011700 418 QGLGFALAVSQK 429 (479)
Q Consensus 418 ~~~~~a~~~~~~ 429 (479)
.||+++|.+.+.
T Consensus 459 ~hPt~~e~~~~~ 470 (479)
T 2hqm_A 459 IHPTSAEELVTM 470 (479)
T ss_dssp CSSCSGGGGGSC
T ss_pred CCCChHHHHHHH
Confidence 999998888765
No 23
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=100.00 E-value=4.8e-51 Score=422.96 Aligned_cols=406 Identities=17% Similarity=0.218 Sum_probs=301.4
Q ss_pred CcCeEEEECCchHHHHHHHHHHH-cCCCCCcEEEEc---------CCCCCCCCCCccccc------ccCCCC----CCCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTK-RGVPPGELCIIS---------EEPVAPYERPALSKG------YLLPEA----PARL 62 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~-~g~~~~~V~lie---------~~~~~~~~~~~l~~~------~~~~~~----~~~~ 62 (479)
+++||+||||||||++||.+|++ .|++ |+||| +.. +...++..+ ++.... ....
T Consensus 2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~---V~liE~~~~~~~~~~~~---~GG~c~~~gciPsk~l~~~a~~~~~~~~~ 75 (490)
T 1fec_A 2 RAYDLVVIGAGSGGLEAGWNAASLHKKR---VAVIDLQKHHGPPHYAA---LGGTCVNVGCVPKKLMVTGANYMDTIRES 75 (490)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHHHCCC---EEEEESCSSSBTTTBSC---TTCHHHHHSHHHHHHHHHHHHHHHHHHHG
T ss_pred ccccEEEECCCHHHHHHHHHHHHHcCCE---EEEEecccccccccCCC---cCccccCCCcchhhHHHHHHHHHHHHHHH
Confidence 46899999999999999999999 8987 99999 321 111111100 000000 0000
Q ss_pred CCcccccCC-----c--------------ccCCCHhHHHHc-CcEEEeCceEEEEECCCcEEEeC-----CC---cEEEe
Q 011700 63 PSFHTCVGA-----N--------------EERLTPKWYNEH-GIELVLGTRVKSADVRRKTLVTA-----TG---ETISY 114 (479)
Q Consensus 63 ~~~~~~~~~-----~--------------~~~~~~~~~~~~-gv~~~~~~~v~~i~~~~~~v~~~-----~g---~~~~~ 114 (479)
+.+...... + ........+++. +++++.+ .+..++. +++.+. ++ +++.|
T Consensus 76 ~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g-~~~~i~~--~~v~v~~~~~~~g~~~~~~~~ 152 (490)
T 1fec_A 76 AGFGWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQG-FGALQDN--HTVLVRESADPNSAVLETLDT 152 (490)
T ss_dssp GGGTEECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEES-EEEEEET--TEEEEESSSSTTSCEEEEEEE
T ss_pred HhcCcccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEe-EEEEeeC--CEEEEEeeccCCCCceEEEEc
Confidence 000000000 0 000112334567 9999998 4667765 456553 56 68999
Q ss_pred ceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhC---CCeEEEE
Q 011700 115 KILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN---KINVTMV 191 (479)
Q Consensus 115 d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~---g~~Vtlv 191 (479)
|+||||||++|..|++ +|.+ .++ +..++.. +. ..+++++|||+|++|+|+|..|.++ |.+||++
T Consensus 153 d~lviAtGs~p~~p~i---~g~~--~~~---~~~~~~~----~~-~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv 219 (490)
T 1fec_A 153 EYILLATGSWPQHLGI---EGDD--LCI---TSNEAFY----LD-EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLA 219 (490)
T ss_dssp EEEEECCCEEECCCCS---BTGG--GCB---CHHHHTT----CS-SCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred CEEEEeCCCCCCCCCC---CCcc--cee---cHHHHhh----hh-hcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEE
Confidence 9999999999998876 5542 222 3333221 11 1478999999999999999999999 9999999
Q ss_pred eecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh-h-h-h
Q 011700 192 FPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS-L-F-E 268 (479)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~-l-~-~ 268 (479)
++.+++++. +++++.+.+.+.++++||++++++.|++++.++++. ..+.+.+|+++++|.|++|+|++|+++ + + .
T Consensus 220 ~~~~~~l~~-~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~-~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~ 297 (490)
T 1fec_A 220 YRGDMILRG-FDSELRKQLTEQLRANGINVRTHENPAKVTKNADGT-RHVVFESGAEADYDVVMLAIGRVPRSQTLQLEK 297 (490)
T ss_dssp ESSSSSSTT-SCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSC-EEEEETTSCEEEESEEEECSCEEESCTTSCGGG
T ss_pred EcCCCcccc-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCE-EEEEECCCcEEEcCEEEEccCCCcCccccCchh
Confidence 999999986 899999999999999999999999999998743333 467888998999999999999999997 3 3 3
Q ss_pred ccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEe
Q 011700 269 GQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSR 346 (479)
Q Consensus 269 ~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~p~~~~~ 346 (479)
.++.. ++|+|.||++|||++|+|||+|||+..+ .++..|..||+.++.||++... ..+|..+|+ ..
T Consensus 298 ~gl~~~~~G~I~Vd~~~~t~~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~ 365 (490)
T 1fec_A 298 AGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRV----------MLTPVAINEGAAFVDTVFANKPRATDHTKVAC--AV 365 (490)
T ss_dssp GTCCBCTTSCBCCCTTCBCSSTTEEECGGGGCSC----------CCHHHHHHHHHHHHHHHHSSCCCCCCCSSCCE--EE
T ss_pred cCccCCCCCCEEECCCCccCCCCEEEEeccCCCc----------cCHHHHHHHHHHHHHHhcCCCCCcCCCCCccE--EE
Confidence 35666 4788999999999999999999999743 4678899999999999998532 245666774 55
Q ss_pred ecCcceEeecCCCceEE------EEc------------cCCCCceE-EEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHH
Q 011700 347 VFTLSWQFYGDNVGEVV------HYG------------NFSGTTFG-AYWV--NKGRLVGSFLEGGTKEEY-EAIAKATR 404 (479)
Q Consensus 347 ~~~~~~~~~G~~~~~~~------~~~------------~~~~~~~~-~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~ 404 (479)
+++.+++++|+++.++. ... +.....|. ++.+ ++++|+|+|++|+++.|+ +.++.||+
T Consensus 366 ~~~~~~a~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~ 445 (490)
T 1fec_A 366 FSIPPMGVCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLK 445 (490)
T ss_dssp CCSSCEEEEECCHHHHHHHCSEEEEEEEEECCHHHHHHSCTTCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHH
T ss_pred ECCCCeEEEeCCHHHHHhcCCCEEEEEeecChhhhhhhcCCCeEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHH
Confidence 67889999999865431 110 11224566 7665 489999999999999997 66899999
Q ss_pred cCCCcCcHHHHhhcCCCcccccCCCC-CCCCCCCCCccccc
Q 011700 405 LQPVVEDLAELETQGLGFALAVSQKP-LPSTPVDGKTVPGL 444 (479)
Q Consensus 405 ~~~~~~dl~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~ 444 (479)
.++|++||.+++..||++++.+.+.. .++.||.+..+.+|
T Consensus 446 ~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~~~~~~~~~~~ 486 (490)
T 1fec_A 446 MGAKISDFYNTIGVHPTSAEELCSMRTPAYFYEKGKRVEKI 486 (490)
T ss_dssp TTCBHHHHHTSCCCSSCSGGGGGSCCSCSEEEETTEEECC-
T ss_pred cCCCHHHHhccccCCCCHHHHHHHHHHHHhhcCcccccccc
Confidence 99999999999999999999998885 77888777667777
No 24
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=100.00 E-value=3.3e-49 Score=406.47 Aligned_cols=406 Identities=18% Similarity=0.229 Sum_probs=298.3
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCccc-cc------------------ccCCCCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YERPALS-KG------------------YLLPEAP 59 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~~~~l~-~~------------------~~~~~~~ 59 (479)
|++++||+|||||+||++||.+|++.|++ |+|||+++... .+..+++ +. +......
T Consensus 1 M~~~~dVvIIGgG~aGl~aA~~l~~~g~~---V~liE~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~ 77 (463)
T 2r9z_A 1 MTQHFDLIAIGGGSGGLAVAEKAAAFGKR---VALIESKALGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGT 77 (463)
T ss_dssp -CCCEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---
T ss_pred CCccCcEEEECCCHHHHHHHHHHHhCCCc---EEEEcCCCCCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCC
Confidence 77789999999999999999999998887 99999984210 0000000 00 0000000
Q ss_pred CCCCCcccccC---CcccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCC
Q 011700 60 ARLPSFHTCVG---ANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGS 136 (479)
Q Consensus 60 ~~~~~~~~~~~---~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~ 136 (479)
.+++.+..... ......+...+++.+++++.++ +..++ .+++.+ +++++.||+||||||++|..|++ +|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i~--~~~v~~-~g~~~~~d~lviAtGs~p~~p~i---~G~ 150 (463)
T 2r9z_A 78 LDWPRLVAGRDRYIGAINSFWDGYVERLGITRVDGH-ARFVD--AHTIEV-EGQRLSADHIVIATGGRPIVPRL---PGA 150 (463)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-EEEEE--TTEEEE-TTEEEEEEEEEECCCEEECCCSC---TTG
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeE-EEEcc--CCEEEE-CCEEEEcCEEEECCCCCCCCCCC---CCc
Confidence 00000000000 0000011234467899999984 55565 357777 67789999999999999988876 554
Q ss_pred CCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHh
Q 011700 137 DAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS 216 (479)
Q Consensus 137 ~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~ 216 (479)
+ .++ +..++.. +.. .+++++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++.+.+.+.+++
T Consensus 151 ~--~~~---~~~~~~~----~~~-~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~ 219 (463)
T 2r9z_A 151 E--LGI---TSDGFFA----LQQ-QPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ-FDPLLSATLAENMHA 219 (463)
T ss_dssp G--GSB---CHHHHHH----CSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHH
T ss_pred c--cee---cHHHHhh----hhc-cCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccc-cCHHHHHHHHHHHHH
Confidence 2 222 3333322 222 4789999999999999999999999999999999998886 899999999999999
Q ss_pred CCcEEEcCCceEEEEEcCCCcEEEEEeCCCc-EEeccEEEEecCCCCChhh--hh-ccccc-ccCcEEEcCcccCCCCCe
Q 011700 217 KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIGIRPNTSL--FE-GQLTL-EKGGIKVTGRLQSSNSSV 291 (479)
Q Consensus 217 ~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~-~i~~D~Vi~a~G~~p~~~l--~~-~~~~~-~~g~i~Vd~~l~t~~~~I 291 (479)
+||++++++++++++.++++ ..+.+.+|+ ++++|.|++|+|++|+++. ++ .++.. ++|+|.||+++||++|+|
T Consensus 220 ~gv~i~~~~~v~~i~~~~~~--~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~I 297 (463)
T 2r9z_A 220 QGIETHLEFAVAALERDAQG--TTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVPGV 297 (463)
T ss_dssp TTCEEESSCCEEEEEEETTE--EEEEETTCCEEEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCTTSBCSSTTE
T ss_pred CCCEEEeCCEEEEEEEeCCe--EEEEEeCCcEEEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECCCCccCCCCE
Confidence 99999999999999874333 467888998 8999999999999999973 23 35666 478899999999999999
Q ss_pred EEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCC--CCCCCCCeEEEeecCcceEeecCCCceEE------
Q 011700 292 YAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT--DKFDYLPFFYSRVFTLSWQFYGDNVGEVV------ 363 (479)
Q Consensus 292 yA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~--~~~~~~p~~~~~~~~~~~~~~G~~~~~~~------ 363 (479)
||+|||+..+ .++..|..||+.+|.||++.... .+|..+|+ ..+++.+++++|+++.++.
T Consensus 298 ya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~--~~~~~~~~a~vGl~e~~a~~~~g~~ 365 (463)
T 2r9z_A 298 YALGDITGRD----------QLTPVAIAAGRRLAERLFDGQSERKLDYDNIPT--VVFAHPPLSKVGLSEPEARERLGDV 365 (463)
T ss_dssp EECGGGGTSC----------CCHHHHHHHHHHHHHHHHSCCTTCCCCCSSCCE--EECCSSCEEEEECCHHHHHHHHCSC
T ss_pred EEEeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCcccCCCCCCCE--EEeCCCCeEEEcCCHHHHHhcCCCC
Confidence 9999998753 45778999999999999975422 35666775 4456788999998754321
Q ss_pred -EEc------------cCCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccC
Q 011700 364 -HYG------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVS 427 (479)
Q Consensus 364 -~~~------------~~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~ 427 (479)
... ......|.++.+ ++++|+|+|++|+++.|+ +.++.||+.++|++||.+++..||++++.+.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~ 445 (463)
T 2r9z_A 366 LTVYETSFTPMRYALNEHGPKTAMKLVCAGPEQRVVGVHVIGDGADEMLQGFAVAVKMGATKADFDNTVAIHPGSAEELV 445 (463)
T ss_dssp EEEEEEEECCGGGTTSSSCCCEEEEEEEETTTTEEEEEEEESTTGGGTSHHHHHHHHTTCBHHHHHTSCCCSSSSGGGGG
T ss_pred EEEEEEEcccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHH
Confidence 110 111245666655 589999999999999887 7789999999999999999999999999999
Q ss_pred CCCCCCCCCCCCcc
Q 011700 428 QKPLPSTPVDGKTV 441 (479)
Q Consensus 428 ~~~~~~~~~~~~~~ 441 (479)
+...+++||.+..+
T Consensus 446 ~~~~~~~~~~~~~~ 459 (463)
T 2r9z_A 446 TLKEPVRRPGDPLP 459 (463)
T ss_dssp CCCSCSBCCC----
T ss_pred HHHhhcccCCCccc
Confidence 99888888765443
No 25
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=100.00 E-value=1.4e-50 Score=419.30 Aligned_cols=405 Identities=18% Similarity=0.180 Sum_probs=295.4
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-------CCCCccccccc--------------------C
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP-------YERPALSKGYL--------------------L 55 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~-------~~~~~l~~~~~--------------------~ 55 (479)
.+|||+||||||||++||.+|+++|++ |+|||+....+ +...++..++. +
T Consensus 8 ~~~DvvVIGgG~aGl~aA~~la~~G~~---V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~ 84 (483)
T 3dgh_A 8 YDYDLIVIGGGSAGLACAKEAVLNGAR---VACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAY 84 (483)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCC---EEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCE---EEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhc
Confidence 368999999999999999999999987 99999532111 11111111000 0
Q ss_pred CCCCCCCCCccc--cc------CCcccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCC-cEEEeceEEeecCCCcc
Q 011700 56 PEAPARLPSFHT--CV------GANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATG-ETISYKILIIATGARAL 126 (479)
Q Consensus 56 ~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g-~~~~~d~lviAtG~~~~ 126 (479)
.-.....+.+.. .. ...........++..+++++.+ .+..++.....+...++ +++.||+||||||++|+
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~~~~~v~v~~~~g~~~~~~d~lviATGs~p~ 163 (483)
T 3dgh_A 85 GWNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYING-LGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPR 163 (483)
T ss_dssp TBCCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEETTEEEEECTTCCEEEEEEEEEECCCEEEC
T ss_pred CcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEccCCEEEEEeCCCeEEEEcCEEEEeCCCCcC
Confidence 000000000000 00 0000001123356679999988 55566666556666666 47999999999999999
Q ss_pred cccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHH
Q 011700 127 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 206 (479)
Q Consensus 127 ~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~ 206 (479)
.|++ +|.+. ..+ +..+... +. ..+++++|||+|++|+|+|..|+++|.+|+++++. .+++. +++++
T Consensus 164 ~p~i---~G~~~-~~~---~~~~~~~----~~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~~-~d~~~ 229 (483)
T 3dgh_A 164 YPDI---PGAVE-YGI---TSDDLFS----LD-REPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRS-IVLRG-FDQQM 229 (483)
T ss_dssp CCSS---TTHHH-HCB---CHHHHTT----CS-SCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-CSSTT-SCHHH
T ss_pred CCCC---CCccc-ccC---cHHHHhh----hh-hcCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCC-CCCcc-cCHHH
Confidence 8876 55431 111 2222211 11 24789999999999999999999999999999884 56665 79999
Q ss_pred HHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCc-----EEeccEEEEecCCCCChhhh---hcccccccCcE
Q 011700 207 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-----RLPTDMVVVGIGIRPNTSLF---EGQLTLEKGGI 278 (479)
Q Consensus 207 ~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~-----~i~~D~Vi~a~G~~p~~~l~---~~~~~~~~g~i 278 (479)
.+.+.+.++++||++++++.+.+++..+++.+ .+.+.+++ ++++|.|++|+|++|+++++ ..++..++|+|
T Consensus 230 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~G~i 308 (483)
T 3dgh_A 230 AELVAASMEERGIPFLRKTVPLSVEKQDDGKL-LVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKI 308 (483)
T ss_dssp HHHHHHHHHHTTCCEEETEEEEEEEECTTSCE-EEEEEETTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBTTBB
T ss_pred HHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcE-EEEEecCCCCceeEEEcCEEEECcccccCcCcCCchhcCccccCCEE
Confidence 99999999999999999999999987445443 46665543 79999999999999999875 23566655899
Q ss_pred EEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCC-CCCCCCCeEEEeecCcceEeecC
Q 011700 279 KVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSWQFYGD 357 (479)
Q Consensus 279 ~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~p~~~~~~~~~~~~~~G~ 357 (479)
.||+++||++|+|||+|||+.... ..+..|..||+.||+||++.... .+|..+|+ ..+.+.+++.+|+
T Consensus 309 ~vd~~~~t~~~~IyA~GD~~~~~~---------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~p~~a~vGl 377 (483)
T 3dgh_A 309 PVDSQEATNVANIYAVGDIIYGKP---------ELTPVAVLAGRLLARRLYGGSTQRMDYKDVAT--TVFTPLEYACVGL 377 (483)
T ss_dssp CCCTTCBCSSTTEEECSTTBTTSC---------CCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCE--EECSSSEEEEEEC
T ss_pred EECcCCccCCCCEEEEEcccCCCC---------ccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCE--EEECCCccEEEeC
Confidence 999999999999999999984211 45778999999999999986532 46777785 4456788999999
Q ss_pred CCceEEE--------E-----cc-----C---CCCceEEEEc--c-CCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcH
Q 011700 358 NVGEVVH--------Y-----GN-----F---SGTTFGAYWV--N-KGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDL 412 (479)
Q Consensus 358 ~~~~~~~--------~-----~~-----~---~~~~~~~~~~--~-~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl 412 (479)
++.++.. . .. . ....|.++.+ + +++|||+|++|+++.|+ +.++.||+.++|++||
T Consensus 378 te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l 457 (483)
T 3dgh_A 378 SEEDAVKQFGADEIEVFHGYYKPTEFFIPQKSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTINTL 457 (483)
T ss_dssp CHHHHHHHHCGGGEEEEEEECCCGGGTTTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHH
T ss_pred CHHHHHhhCCCCCEEEEEEeecchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHH
Confidence 8754321 0 00 0 1235666554 3 69999999999999998 5689999999999999
Q ss_pred HHHhhcCCCcccccCCCCCCCCCCC
Q 011700 413 AELETQGLGFALAVSQKPLPSTPVD 437 (479)
Q Consensus 413 ~~~~~~~~~~a~~~~~~~~~~~~~~ 437 (479)
.+++..||+++|.+.+..++|+||.
T Consensus 458 ~~~~~~hPt~~e~~~~~~~~~~~~~ 482 (483)
T 3dgh_A 458 INTVGIHPTTAEEFTRLAITKRSGL 482 (483)
T ss_dssp HTSCCCSSCSGGGGGGCCCBTTTBT
T ss_pred hhcccCCCChHHHHHHHHhHHhccC
Confidence 9999999999999999999999974
No 26
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=100.00 E-value=5.3e-49 Score=403.64 Aligned_cols=395 Identities=18% Similarity=0.204 Sum_probs=289.8
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCccc-ccccCCC----CCC-CCCCcccccCC-
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YERPALS-KGYLLPE----APA-RLPSFHTCVGA- 71 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~~~~l~-~~~~~~~----~~~-~~~~~~~~~~~- 71 (479)
|++++||+|||||+||++||.+|++.|++ |+|||+++... .+..+++ +.++... ... ..+.+......
T Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~---V~liE~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~ 77 (450)
T 1ges_A 1 MTKHYDYIAIGGGSGGIASINRAAMYGQK---CALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTIN 77 (450)
T ss_dssp --CEEEEEEECCSHHHHHHHHHHHTTTCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEE
T ss_pred CCccCCEEEECCCHHHHHHHHHHHhCCCe---EEEEcCCCCCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCC
Confidence 77789999999999999999999998886 99999984210 0000010 0000000 000 00000000000
Q ss_pred ----------------cccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCC
Q 011700 72 ----------------NEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSG 135 (479)
Q Consensus 72 ----------------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g 135 (479)
.........+++.+++++.++ +..++. +++.+ ++++++||+||||||++|..|++ +|
T Consensus 78 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~i~~--~~v~~-~g~~~~~d~lviAtGs~p~~p~i---~g 150 (450)
T 1ges_A 78 KFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGF-ARFVDA--KTLEV-NGETITADHILIATGGRPSHPDI---PG 150 (450)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-CEEEET--TEEEE-TTEEEEEEEEEECCCEEECCCCS---TT
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEecC--CEEEE-CCEEEEeCEEEECCCCCCCCCCC---CC
Confidence 000011233467899999984 555664 56777 67789999999999999988876 55
Q ss_pred CCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHH
Q 011700 136 SDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYK 215 (479)
Q Consensus 136 ~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~ 215 (479)
.+ .+ .+..+... +.. .+++++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++.+.+.+.++
T Consensus 151 ~~--~~---~~~~~~~~----~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~ 219 (450)
T 1ges_A 151 VE--YG---IDSDGFFA----LPA-LPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-FDPMISETLVEVMN 219 (450)
T ss_dssp GG--GS---BCHHHHHH----CSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHH
T ss_pred cc--ce---ecHHHhhh----hhh-cCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhh-hhHHHHHHHHHHHH
Confidence 42 22 23333322 222 4799999999999999999999999999999999998885 89999999999999
Q ss_pred hCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhh--hh-ccccc-ccCcEEEcCcccCCCCCe
Q 011700 216 SKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL--FE-GQLTL-EKGGIKVTGRLQSSNSSV 291 (479)
Q Consensus 216 ~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l--~~-~~~~~-~~g~i~Vd~~l~t~~~~I 291 (479)
+.||++++++++++++.++++. ..+.+.+|+++++|.|++|+|++|+++. ++ .++.. ++|+|.||+++||++|+|
T Consensus 220 ~~Gv~i~~~~~v~~i~~~~~~~-~~v~~~~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~~~t~~~~I 298 (450)
T 1ges_A 220 AEGPQLHTNAIPKAVVKNTDGS-LTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGI 298 (450)
T ss_dssp HHSCEEECSCCEEEEEECTTSC-EEEEETTSCEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTE
T ss_pred HCCCEEEeCCEEEEEEEeCCcE-EEEEECCCcEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECCCCccCCCCE
Confidence 9999999999999998743343 3578889989999999999999999973 33 35666 478899999999999999
Q ss_pred EEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCC-C-CCCCCCCeEEEeecCcceEeecCCCceEEEE-c--
Q 011700 292 YAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-T-DKFDYLPFFYSRVFTLSWQFYGDNVGEVVHY-G-- 366 (479)
Q Consensus 292 yA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~-~-~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~-~-- 366 (479)
||+|||+..+ .++..|..||+.+|.||++... . .+|..+|+ ..+++.+++.+|+++.++... +
T Consensus 299 yA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~--~~~~~~~~a~vG~~e~~a~~~~g~~ 366 (450)
T 1ges_A 299 YAVGDNTGAV----------ELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPT--VVFSHPPIGTVGLTEPQAREQYGDD 366 (450)
T ss_dssp EECSGGGTSC----------CCHHHHHHHHHHHHHHHHTTCTTCCCCCSSCCE--EECCSSCEEEEECCHHHHHHHHCGG
T ss_pred EEEeccCCCC----------ccHHHHHHHHHHHHHHHcCCCCcccCCCCCCCe--EEECCCceEEEeCCHHHHHhcCCCC
Confidence 9999998753 4577899999999999998542 2 35666775 445678899999876443211 0
Q ss_pred -----------------cCCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCccccc
Q 011700 367 -----------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAV 426 (479)
Q Consensus 367 -----------------~~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~ 426 (479)
......|.++.+ ++++|+|+|++|++++|+ +.++.||+.++|++||.+++..||+++|.+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~ 446 (450)
T 1ges_A 367 QVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEF 446 (450)
T ss_dssp GEEEEEEEEECHHHHTSSSCCEEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGG
T ss_pred cEEEEEEECchhhHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCChHHHH
Confidence 111234666555 589999999999999997 668999999999999999999999998877
Q ss_pred CCC
Q 011700 427 SQK 429 (479)
Q Consensus 427 ~~~ 429 (479)
.+.
T Consensus 447 ~~~ 449 (450)
T 1ges_A 447 VTM 449 (450)
T ss_dssp GSC
T ss_pred Hhh
Confidence 643
No 27
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=100.00 E-value=7.6e-50 Score=413.42 Aligned_cols=396 Identities=17% Similarity=0.198 Sum_probs=290.6
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCccc-ccc---------cCCCCCCCCC----Ccc
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YERPALS-KGY---------LLPEAPARLP----SFH 66 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~~~~l~-~~~---------~~~~~~~~~~----~~~ 66 (479)
.++||+||||||||++||..|+++|++ |+|||++.... .+..+.+ +.+ +.......++ .+.
T Consensus 19 ~~~dVvIIGgG~aGl~aA~~la~~G~~---V~liE~~~~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 95 (478)
T 3dk9_A 19 ASYDYLVIGGGSGGLASARRAAELGAR---AAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFN 95 (478)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCCC
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCCCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCccC
Confidence 468999999999999999999999987 99999875310 0000000 000 0000000000 000
Q ss_pred cc--c------CCcccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccc---cccCCCC
Q 011700 67 TC--V------GANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKL---EEFGLSG 135 (479)
Q Consensus 67 ~~--~------~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~---~~~g~~g 135 (479)
.. . ...........++..+++++.+ .+..++.....+. .+++++.||+||||||++|..| ++ +|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~~~~~~v~-~~g~~~~~d~lviAtG~~p~~p~~~~i---~G 170 (478)
T 3dk9_A 96 WRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRG-HAAFTSDPKPTIE-VSGKKYTAPHILIATGGMPSTPHESQI---PG 170 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEECSCSSCEEE-ETTEEEECSCEEECCCEEECCCCTTTS---TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEeeCCeEEEE-ECCEEEEeeEEEEccCCCCCCCCcCCC---CC
Confidence 00 0 0000011223345679999998 4566666666776 4667899999999999999888 55 66
Q ss_pred CCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHH
Q 011700 136 SDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYK 215 (479)
Q Consensus 136 ~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~ 215 (479)
.+ .+ .+..+... +. ..+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+.+.+.++
T Consensus 171 ~~--~~---~~~~~~~~----~~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~~~~~l~ 239 (478)
T 3dk9_A 171 AS--LG---ITSDGFFQ----LE-ELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS-FDSMISTNCTEELE 239 (478)
T ss_dssp GG--GS---BCHHHHTT----CC-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHH
T ss_pred Cc--ee---EchHHhhc----hh-hcCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccccc-cCHHHHHHHHHHHH
Confidence 43 11 12222211 11 14799999999999999999999999999999999999875 89999999999999
Q ss_pred hCCcEEEcCCceEEEEEcCCCcEEEEEeCC---C----cEEeccEEEEecCCCCChhh--h-hccccc-ccCcEEEcCcc
Q 011700 216 SKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---G----NRLPTDMVVVGIGIRPNTSL--F-EGQLTL-EKGGIKVTGRL 284 (479)
Q Consensus 216 ~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~---g----~~i~~D~Vi~a~G~~p~~~l--~-~~~~~~-~~g~i~Vd~~l 284 (479)
++||++++++.+++++..+++....+.+.+ + +++++|.|++|+|++|+++. + ..++.. ++|+|.||+++
T Consensus 240 ~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~ 319 (478)
T 3dk9_A 240 NAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQ 319 (478)
T ss_dssp HTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTC
T ss_pred HCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCCc
Confidence 999999999999999875555334566665 2 57999999999999999983 2 345666 67889999999
Q ss_pred cCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCC--CCCCCCCCCeEEEeecCcceEeecCCCceE
Q 011700 285 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD--KTDKFDYLPFFYSRVFTLSWQFYGDNVGEV 362 (479)
Q Consensus 285 ~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~--~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~ 362 (479)
||++|+|||+|||++.+ ..+..|..||+.||+||++.. ...+|..+|+ ..+++.+++.+|+++.++
T Consensus 320 ~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~--~~~~~p~~a~vGlte~~a 387 (478)
T 3dk9_A 320 NTNVKGIYAVGDVCGKA----------LLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPT--VVFSHPPIGTVGLTEDEA 387 (478)
T ss_dssp BCSSTTEEECGGGGCSS----------CCHHHHHHHHHHHHHHHHSCCTTCCCCCTTCCE--EECCSSCEEEEECCHHHH
T ss_pred ccCCCCEEEEEecCCCC----------ccHhHHHHHHHHHHHHHcCCCCcccCCCCCCCe--EEECCCceEEeeCCHHHH
Confidence 99999999999999654 457789999999999999862 2246677785 456678899999987643
Q ss_pred EE-------------Ecc-------CCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcC
Q 011700 363 VH-------------YGN-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQG 419 (479)
Q Consensus 363 ~~-------------~~~-------~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~ 419 (479)
.. +.. .....|.++.+ ++++|||+|++|++++|+ +.++.||+.++|++||.+++..|
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~h 467 (478)
T 3dk9_A 388 IHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIH 467 (478)
T ss_dssp HHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCS
T ss_pred HhhCCCccEEEEEeecCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCC
Confidence 21 111 01235666554 689999999999999998 56899999999999999999999
Q ss_pred CCcccccCCC
Q 011700 420 LGFALAVSQK 429 (479)
Q Consensus 420 ~~~a~~~~~~ 429 (479)
|+++|.+.+.
T Consensus 468 Pt~~e~~~~~ 477 (478)
T 3dk9_A 468 PTSSEELVTL 477 (478)
T ss_dssp SSSGGGGGSC
T ss_pred CChHHHHHhc
Confidence 9999987653
No 28
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=100.00 E-value=2.9e-50 Score=417.41 Aligned_cols=409 Identities=19% Similarity=0.205 Sum_probs=294.9
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC------CCcccccc-----c---------------CCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYE------RPALSKGY-----L---------------LPE 57 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~------~~~l~~~~-----~---------------~~~ 57 (479)
+|||+||||||||++||..|+++|.+ |+|||+.+..++. ..++..++ + +..
T Consensus 6 ~~DvvVIG~G~aGl~aA~~la~~G~~---V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~ 82 (488)
T 3dgz_A 6 SFDLLVIGGGSGGLACAKEAAQLGKK---VAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGW 82 (488)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC---EEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCe---EEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCc
Confidence 58999999999999999999999987 9999974322211 11110000 0 000
Q ss_pred CCC--CCCCcccccC------CcccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCC--cEEEeceEEeecCCCccc
Q 011700 58 APA--RLPSFHTCVG------ANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATG--ETISYKILIIATGARALK 127 (479)
Q Consensus 58 ~~~--~~~~~~~~~~------~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~~~~ 127 (479)
... ....+..... ..........++..+++++.+ .+..++.....+...+| .++.||+||||||++|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g-~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~ 161 (488)
T 3dgz_A 83 EVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNI-KASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRY 161 (488)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECC-EEEESSSSEEEEECTTSCEEEEEEEEEEECCCEEECC
T ss_pred ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCeEEEEeCCCceEEEECCEEEEcCCCCCCC
Confidence 000 0000000000 000001223455679999987 56655555555555566 579999999999999998
Q ss_pred cc-ccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHH
Q 011700 128 LE-EFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 206 (479)
Q Consensus 128 ~~-~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~ 206 (479)
|+ + ||.+. .++ +..+... +. ..+++++|||+|++|+|+|..|+++|.+||++++. .+++. +++++
T Consensus 162 p~~i---~G~~~-~~~---~~~~~~~----~~-~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~-~~l~~-~d~~~ 227 (488)
T 3dgz_A 162 PTQV---KGALE-YGI---TSDDIFW----LK-ESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRS-IPLRG-FDQQM 227 (488)
T ss_dssp CSSC---BTHHH-HCB---CHHHHTT----CS-SCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTT-SCHHH
T ss_pred CCCC---CCccc-ccC---cHHHHHh----hh-hcCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcC-ccccc-CCHHH
Confidence 87 6 55321 111 2222221 11 25789999999999999999999999999999986 45664 89999
Q ss_pred HHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC---Cc--EEeccEEEEecCCCCChhhh---hcccccc--cC
Q 011700 207 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---GN--RLPTDMVVVGIGIRPNTSLF---EGQLTLE--KG 276 (479)
Q Consensus 207 ~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~---g~--~i~~D~Vi~a~G~~p~~~l~---~~~~~~~--~g 276 (479)
.+.+.+.++++||++++++.+.+++..+++.+ .+.+.+ |+ ++++|.|++|+|++|+++++ ..++..+ +|
T Consensus 228 ~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~-~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G 306 (488)
T 3dgz_A 228 SSLVTEHMESHGTQFLKGCVPSHIKKLPTNQL-QVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQ 306 (488)
T ss_dssp HHHHHHHHHHTTCEEEETEEEEEEEECTTSCE-EEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSC
T ss_pred HHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcE-EEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCCC
Confidence 99999999999999999999999987444433 344433 54 47999999999999999864 2345553 68
Q ss_pred cEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCC-CCCCCCCeEEEeecCcceEee
Q 011700 277 GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSWQFY 355 (479)
Q Consensus 277 ~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~p~~~~~~~~~~~~~~ 355 (479)
+|.||+++||++|+|||+|||+.... .++..|..||+.|++||++.... .++..+|+ ..+.+.+++.+
T Consensus 307 ~i~vd~~~~t~~~~IyA~GD~~~~~~---------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~p~~a~v 375 (488)
T 3dgz_A 307 KIIVDAQEATSVPHIYAIGDVAEGRP---------ELTPTAIKAGKLLAQRLFGKSSTLMDYSNVPT--TVFTPLEYGCV 375 (488)
T ss_dssp CBCCCTTSBCSSTTEEECGGGBTTCC---------CCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCE--EECSSSEEEEE
T ss_pred eEeECCCCccCCCCEEEeEEecCCCC---------cchhHHHHHHHHHHHHHcCCCCccCCCCCCCE--EEECCCCeEEE
Confidence 89999999999999999999984321 45778999999999999986532 46667786 44567889999
Q ss_pred cCCCceEEE--------Ec-----c-----C---CCCceEEEEc---cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcC
Q 011700 356 GDNVGEVVH--------YG-----N-----F---SGTTFGAYWV---NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVE 410 (479)
Q Consensus 356 G~~~~~~~~--------~~-----~-----~---~~~~~~~~~~---~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~ 410 (479)
|+++.++.. .. . . ....|.++.+ ++++|||+|++|+++.|+ +.++.||+.++|++
T Consensus 376 Glte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~ 455 (488)
T 3dgz_A 376 GLSEEEAVALHGQEHVEVYHAYYKPLEFTVADRDASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYA 455 (488)
T ss_dssp ECCHHHHHHHHCGGGEEEEEEECCCHHHHHTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHH
T ss_pred eCCHHHHHhhCCCCcEEEEEccccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHH
Confidence 998754311 10 0 0 0245666554 479999999999999998 56899999999999
Q ss_pred cHHHHhhcCCCcccccCCCCCCCCCCCCCccc
Q 011700 411 DLAELETQGLGFALAVSQKPLPSTPVDGKTVP 442 (479)
Q Consensus 411 dl~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 442 (479)
||.+++..||+++|.+.++..+|+||.+.+++
T Consensus 456 ~l~~~~~~hPt~~e~~~~~~~~~~~~~~~~~~ 487 (488)
T 3dgz_A 456 QVMQTVGIHPTCSEEVVKLHISKRSGLEPTVT 487 (488)
T ss_dssp HHHTSCCCSSCSTHHHHTCCEETTTTCCCC--
T ss_pred HHhccccCCCChHHHHHHHHHHhhcCCCcccC
Confidence 99999999999999999999999998766554
No 29
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=100.00 E-value=5.5e-49 Score=406.56 Aligned_cols=397 Identities=21% Similarity=0.231 Sum_probs=290.6
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCcc-cccccCCC-----------CCCCCC----C
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYE---RPAL-SKGYLLPE-----------APARLP----S 64 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~---~~~l-~~~~~~~~-----------~~~~~~----~ 64 (479)
++||+|||||+||++||..|+++|++ |+|||+++..... ..+. ++.++... ....++ .
T Consensus 6 ~~dvvIIGgG~aGl~aA~~l~~~g~~---V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~~ 82 (474)
T 1zmd_A 6 DADVTVIGSGPGGYVAAIKAAQLGFK---TVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVR 82 (474)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC---EEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCEE
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCe---EEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCCc
Confidence 58999999999999999999999886 9999998532100 0000 01000000 000000 0
Q ss_pred ccc--cc------CCcccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCC-C-cEEEeceEEeecCCCcccccccCCC
Q 011700 65 FHT--CV------GANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTAT-G-ETISYKILIIATGARALKLEEFGLS 134 (479)
Q Consensus 65 ~~~--~~------~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~-g-~~~~~d~lviAtG~~~~~~~~~g~~ 134 (479)
+.. .. .........+++++.+++++.++ +..++.....+.+.+ + ++++||+||+|||++|..|++ +
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~-~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~p~i---~ 158 (474)
T 1zmd_A 83 LNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGY-GKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPG---I 158 (474)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESE-EEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCTT---C
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEecCCEEEEEecCCCcEEEEeCEEEECCCCCCCCCCC---C
Confidence 000 00 00000012355667899999985 455666555566555 4 579999999999999988877 5
Q ss_pred CCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHH
Q 011700 135 GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYY 214 (479)
Q Consensus 135 g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l 214 (479)
|.+..++++ ..++.. +.. .+++++|||+|++|+|+|..|.++|.+|+++++.++++++.+++++.+.+.+.+
T Consensus 159 g~~~~~v~t---~~~~~~----~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l 230 (474)
T 1zmd_A 159 TIDEDTIVS---STGALS----LKK-VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRIL 230 (474)
T ss_dssp CCCSSSEEC---HHHHTT----CSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSSCCHHHHHHHHHHH
T ss_pred CCCcCcEEc---HHHHhh----ccc-cCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcccCHHHHHHHHHHH
Confidence 544344543 222221 112 479999999999999999999999999999999999998458999999999999
Q ss_pred HhCCcEEEcCCceEEEEEcCCCcEEEEE-----eCCCcEEeccEEEEecCCCCChhh--hh-ccccc-ccCcEEEcCccc
Q 011700 215 KSKGVKFVKGTVLSSFDVDSNGKVVAVN-----LRDGNRLPTDMVVVGIGIRPNTSL--FE-GQLTL-EKGGIKVTGRLQ 285 (479)
Q Consensus 215 ~~~GV~i~~~~~v~~i~~~~~g~v~~v~-----~~~g~~i~~D~Vi~a~G~~p~~~l--~~-~~~~~-~~g~i~Vd~~l~ 285 (479)
+++||+++++++|++++.++++.+ .+. ..+++++++|.|++|+|++|++++ ++ .++.. ++|+|.||++||
T Consensus 231 ~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~ 309 (474)
T 1zmd_A 231 QKQGFKFKLNTKVTGATKKSDGKI-DVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQ 309 (474)
T ss_dssp HHTTCEEECSEEEEEEEECTTSCE-EEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCTTCB
T ss_pred HHCCCEEEeCceEEEEEEcCCceE-EEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECcCCc
Confidence 999999999999999987433323 344 346678999999999999999986 33 35666 468899999999
Q ss_pred CCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEE--
Q 011700 286 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV-- 363 (479)
Q Consensus 286 t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~-- 363 (479)
|+.|+|||+|||+..+ ..+..|..||+.||.||++.....+|..+|+ ..+++.+++++|+++.++.
T Consensus 310 t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~--~~~~~~~~a~vG~~e~~a~~~ 377 (474)
T 1zmd_A 310 TKIPNIYAIGDVVAGP----------MLAHKAEDEGIICVEGMAGGAVHIDYNCVPS--VIYTHPEVAWVGKSEEQLKEE 377 (474)
T ss_dssp CSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHTTCCCCCCGGGCCE--EECSSSEEEEEECCHHHHHHH
T ss_pred cCCCCEEEeeecCCCC----------ccHHHHHHHHHHHHHHhcCCCCcCCCCCCCE--EEECCCCeEEEeCCHHHHHhc
Confidence 9999999999999864 3567899999999999998653345666776 4577889999999876431
Q ss_pred ----EEc------------cCCCCceEEEEcc--CCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCccc
Q 011700 364 ----HYG------------NFSGTTFGAYWVN--KGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFAL 424 (479)
Q Consensus 364 ----~~~------------~~~~~~~~~~~~~--~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~ 424 (479)
... ......|.+++++ +++|+|+|++|+++.|+ +.++.||+.++|++||.+++..||++++
T Consensus 378 g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e 457 (474)
T 1zmd_A 378 GIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSE 457 (474)
T ss_dssp TCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTCTHH
T ss_pred CCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCCHHH
Confidence 110 0112457776663 89999999999999887 6689999999999999999988888887
Q ss_pred ccCC
Q 011700 425 AVSQ 428 (479)
Q Consensus 425 ~~~~ 428 (479)
.+.+
T Consensus 458 ~~~~ 461 (474)
T 1zmd_A 458 AFRE 461 (474)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6644
No 30
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=100.00 E-value=2e-48 Score=403.38 Aligned_cols=405 Identities=25% Similarity=0.381 Sum_probs=306.0
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCC--------CCCCcc--cccC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPA--------RLPSFH--TCVG 70 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~--~~~~ 70 (479)
|+.++||||||||+||++||..|++.+. ..+|+|||+++..+|.+|++++.++...... .++... ....
T Consensus 8 ~~~~~~vvIIGgG~AGl~aA~~L~~~~~-g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (493)
T 1m6i_A 8 APSHVPFLLIGGGTAAFAAARSIRARDP-GARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQ 86 (493)
T ss_dssp CCSEEEEEEESCSHHHHHHHHHHHHHST-TCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSS
T ss_pred CCCcCCEEEECChHHHHHHHHHHHhcCC-CCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhccccccccccccccccc
Confidence 5567899999999999999999988732 3459999999988999988887776543210 000000 0000
Q ss_pred Ccc-cCCCHhH--HHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCC-CCCeEEecC
Q 011700 71 ANE-ERLTPKW--YNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSD-AENVCYLRD 146 (479)
Q Consensus 71 ~~~-~~~~~~~--~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~-~~~v~~~~~ 146 (479)
... ......+ +.+.+++++.+++|+.++++.++|.+.+|+++.||+||||||++|+.|++++....+ .++++++++
T Consensus 87 ~~~~~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g~~i~yd~lviATGs~p~~~~~~~~~~~~~~~~v~~~~~ 166 (493)
T 1m6i_A 87 PPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRK 166 (493)
T ss_dssp CGGGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEECCCHHHHTSCHHHHHTEEECCS
T ss_pred chHhhcchhhhhhhhcCCeEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCCCCCcccccccccCceEEEcC
Confidence 000 0000011 135689999999999999999999999999999999999999999887753211001 246888899
Q ss_pred HHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhh----CCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEE
Q 011700 147 LADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVI----NKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222 (479)
Q Consensus 147 ~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~----~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~ 222 (479)
..++..+...+. .+++++|||+|++|+|+|..|.+ .|.+|+++++.+.++++.+++++.+.+.+.++++||+++
T Consensus 167 ~~d~~~l~~~~~--~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~~~~~~~l~~~GV~v~ 244 (493)
T 1m6i_A 167 IGDFRSLEKISR--EVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVM 244 (493)
T ss_dssp HHHHHHHHHHHH--HCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHHHHHHHHHHhcCCEEE
Confidence 988888877665 37999999999999999999987 578999999988888777899999999999999999999
Q ss_pred cCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhhc-ccccc--cCcEEEcCcccCCCCCeEEEeeecc
Q 011700 223 KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTLE--KGGIKVTGRLQSSNSSVYAVGDVAA 299 (479)
Q Consensus 223 ~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~~--~g~i~Vd~~l~t~~~~IyA~GD~~~ 299 (479)
+++.|++++.+ ++.+ .+.+.+|+++++|.|++++|++|++++++. ++..+ +|+|.||++||| .|+|||+|||+.
T Consensus 245 ~~~~V~~i~~~-~~~~-~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~~~~ggi~Vd~~l~t-~~~IyA~GD~a~ 321 (493)
T 1m6i_A 245 PNAIVQSVGVS-SGKL-LIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQA-RSNIWVAGDAAC 321 (493)
T ss_dssp CSCCEEEEEEE-TTEE-EEEETTSCEEEESEEEECCCEEECCTTHHHHTCCBCTTTCSEECCTTCEE-ETTEEECGGGEE
T ss_pred eCCEEEEEEec-CCeE-EEEECCCCEEECCEEEECCCCCccHHHHHHcCCccccCCCcEEECCCccc-CCCeeEeeeeEe
Confidence 99999999863 3443 688899999999999999999999987754 56654 489999999999 699999999999
Q ss_pred ccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeec-Cc----------ceEeecCCCc-----e--
Q 011700 300 FPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVF-TL----------SWQFYGDNVG-----E-- 361 (479)
Q Consensus 300 ~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~-~~----------~~~~~G~~~~-----~-- 361 (479)
.+....|.. +++++..|..||+.||+||++.. ..|...|+||+.++ +. .+.++|.... +
T Consensus 322 ~~~~~~g~~-~~~~~~~A~~qg~~aa~ni~g~~--~~~~~~~~~~s~~~~~~~~~~~g~~~~~~~~~G~~~~~~~~~~~~ 398 (493)
T 1m6i_A 322 FYDIKLGRR-RVEHHDHAVVSGRLAGENMTGAA--KPYWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPK 398 (493)
T ss_dssp EEETTTEEE-CCCCHHHHHHHHHHHHHHHTSCC--CCCCCCCEEEEESSTTCEEEEEECCCTTSCEEEEEECCCTTCSHH
T ss_pred ccCcccCcc-ccchHHHHHHHHHHHHHHhcCCC--CCcCCcCceeeeeccCcceEEEeccCCCcceEEeecccccccccc
Confidence 776544443 56789999999999999999865 57888999999887 33 3333442100 0
Q ss_pred ----------------------EEEE----cc-------CCCCceEEEEccCCEEEEEEEeCCCHHHHHHHHHHHHcCCC
Q 011700 362 ----------------------VVHY----GN-------FSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPV 408 (479)
Q Consensus 362 ----------------------~~~~----~~-------~~~~~~~~~~~~~~~i~G~~~~g~~~~e~~~~~~~i~~~~~ 408 (479)
.... ++ ....+|..|++++|+|+|+.++|.. .++..+..+|+.+.+
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~li~~~~~ 477 (493)
T 1m6i_A 399 SATEQSGTGIRSESETESEASEITIPPSTPAVPQAPVQGEDYGKGVIFYLRDKVVVGIVLWNIF-NRMPIARKIIKDGEQ 477 (493)
T ss_dssp HHHHHHSCSCHHHHSCSCCCC--------------------CCEEEEEEEETTEEEEEEEESCC-SCHHHHHHHHHHCCB
T ss_pred cccccccccccccccccccccccccccccccccccccccccCCcEEEEEEeCCEEEEEEEecCc-chHHHHHHHHhCCCC
Confidence 0000 11 0113456678899999999999953 456667888999999
Q ss_pred cCcHHHH
Q 011700 409 VEDLAEL 415 (479)
Q Consensus 409 ~~dl~~~ 415 (479)
++++.++
T Consensus 478 ~~~~~~~ 484 (493)
T 1m6i_A 478 HEDLNEV 484 (493)
T ss_dssp CSCSTTG
T ss_pred CCCHHHH
Confidence 8888765
No 31
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=100.00 E-value=2.4e-49 Score=409.79 Aligned_cols=398 Identities=18% Similarity=0.227 Sum_probs=288.4
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC---CCCcc-cccccCC---------CCCCCCC----
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPY---ERPAL-SKGYLLP---------EAPARLP---- 63 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~---~~~~l-~~~~~~~---------~~~~~~~---- 63 (479)
|+.++||+|||||+||+++|..|++.|++ |+|||+++.... +..+. ++.++.. .....++
T Consensus 3 m~~~~dVvIIGaG~aGl~aA~~l~~~G~~---V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~ 79 (482)
T 1ojt_A 3 ADAEYDVVVLGGGPGGYSAAFAAADEGLK---VAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEP 79 (482)
T ss_dssp SEEEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCC
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCe---EEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCC
Confidence 55578999999999999999999999887 999999653210 00000 0000000 0000000
Q ss_pred --CcccccC------CcccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCC------------cEEEeceEEeecCC
Q 011700 64 --SFHTCVG------ANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATG------------ETISYKILIIATGA 123 (479)
Q Consensus 64 --~~~~~~~------~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g------------~~~~~d~lviAtG~ 123 (479)
.+..... ......+..++++.+++++.++.+. ++.....+...++ .+++||+||+|||+
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs 158 (482)
T 1ojt_A 80 ELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQF-LDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGS 158 (482)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEE-EETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCE
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEE-ccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCC
Confidence 0000000 0000012245567899999986544 4443223333345 67999999999999
Q ss_pred CcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCC
Q 011700 124 RALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT 203 (479)
Q Consensus 124 ~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~ 203 (479)
+|..|+. ++ .+ ..++ +..++..+ .. .+++++|||+|++|+|+|..|+++|.+||++++.+++++. ++
T Consensus 159 ~p~~~~~--i~-~~-~~v~---~~~~~~~~----~~-~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~~ 225 (482)
T 1ojt_A 159 RVTKLPF--IP-ED-PRII---DSSGALAL----KE-VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-AD 225 (482)
T ss_dssp EECCCSS--CC-CC-TTEE---CHHHHTTC----CC-CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SC
T ss_pred CCCCCCC--CC-cc-CcEE---cHHHHhcc----cc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc-cC
Confidence 9988763 23 22 2343 33333221 11 4799999999999999999999999999999999999986 89
Q ss_pred HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC----CcEEeccEEEEecCCCCChhhh--h-ccccc-cc
Q 011700 204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD----GNRLPTDMVVVGIGIRPNTSLF--E-GQLTL-EK 275 (479)
Q Consensus 204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~----g~~i~~D~Vi~a~G~~p~~~l~--~-~~~~~-~~ 275 (479)
+++.+.+.+.++++||++++++++.+++.++++ ..+.+.+ |+++++|.|++|+|++||++++ + .++.. ++
T Consensus 226 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~ 303 (482)
T 1ojt_A 226 RDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDG--VYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDR 303 (482)
T ss_dssp HHHHHHHHHHHGGGEEEEECSCEEEEEEEETTE--EEEEEESSSCCSSCEEESCEEECCCEEECGGGTTGGGTTCCCCTT
T ss_pred HHHHHHHHHHHHhcCCEEEECCEEEEEEEcCCe--EEEEEeccCCCceEEEcCEEEECcCCCcCCCCCChhhcCceeCCC
Confidence 999999999999999999999999999873322 3566666 7789999999999999999863 3 35666 45
Q ss_pred CcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEee
Q 011700 276 GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFY 355 (479)
Q Consensus 276 g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~ 355 (479)
|+|.||++|||+.|+|||+|||+..+ .++..|..||+.||.||++.....++..+|+ ..+++.+++++
T Consensus 304 G~i~vd~~~~t~~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~~~~~~~a~v 371 (482)
T 1ojt_A 304 GFIEVDKQMRTNVPHIYAIGDIVGQP----------MLAHKAVHEGHVAAENCAGHKAYFDARVIPG--VAYTSPEVAWV 371 (482)
T ss_dssp SCCCCCTTSBCSSTTEEECGGGTCSS----------CCHHHHHHHHHHHHHHHTTCCCCCCCCCCCE--EECSSSCEEEE
T ss_pred CCEeeCCCcccCCCCEEEEEcccCCC----------ccHHHHHHHHHHHHHHHcCCCccCCCCCCCE--EEEcCCCeEEE
Confidence 88999999999999999999999854 3577899999999999998653345556674 56788899999
Q ss_pred cCCCceE------EEEc------------cCCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHH
Q 011700 356 GDNVGEV------VHYG------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAE 414 (479)
Q Consensus 356 G~~~~~~------~~~~------------~~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~ 414 (479)
|+++.++ +..+ ......|.++++ ++++|+|+|++|+++.|+ +.++.||+.++|++||.+
T Consensus 372 G~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~ 451 (482)
T 1ojt_A 372 GETELSAKASARKITKANFPWAASGRAIANGCDKPFTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGK 451 (482)
T ss_dssp ECCHHHHHHHTCCEEEEEEEGGGCHHHHHTTCCSCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHT
T ss_pred eCCHHHHHhcCCCEEEEEEEcCcchHHhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhc
Confidence 9987543 1111 011245777766 689999999999999887 568999999999999999
Q ss_pred HhhcCCCcccccCCC
Q 011700 415 LETQGLGFALAVSQK 429 (479)
Q Consensus 415 ~~~~~~~~a~~~~~~ 429 (479)
++..||++++.+.+.
T Consensus 452 ~~~~~Pt~~e~~~~a 466 (482)
T 1ojt_A 452 TIHPHPTLGESIGMA 466 (482)
T ss_dssp SCCCSSSSTTHHHHH
T ss_pred CccCCCCHHHHHHHH
Confidence 998888888766543
No 32
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=100.00 E-value=9.5e-49 Score=404.10 Aligned_cols=395 Identities=19% Similarity=0.213 Sum_probs=289.7
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC---CCCcc-cccccCCC----------CCCCCC------
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPY---ERPAL-SKGYLLPE----------APARLP------ 63 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~---~~~~l-~~~~~~~~----------~~~~~~------ 63 (479)
++||+|||||+||++||.+|+++|++ |+|||+++.... +..+. ++.++... ....++
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~g~~---V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 78 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQLGMK---TACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVT 78 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCE
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCc
Confidence 48999999999999999999999886 999999853210 00000 11000000 000000
Q ss_pred -Cccccc------CCcccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCC--cEEEeceEEeecCCCcccccccCCC
Q 011700 64 -SFHTCV------GANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATG--ETISYKILIIATGARALKLEEFGLS 134 (479)
Q Consensus 64 -~~~~~~------~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~~~~~~~~g~~ 134 (479)
.+.... .........+++++.+++++.++.+ .++.....+.+.+| ++++||+||+|||++|..|++ +
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~-~i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~p~~---~ 154 (468)
T 2qae_A 79 MDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGS-FETAHSIRVNGLDGKQEMLETKKTIIATGSEPTELPF---L 154 (468)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEE-EEETTEEEEEETTSCEEEEEEEEEEECCCEEECCBTT---B
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-EeeCCEEEEEecCCceEEEEcCEEEECCCCCcCCCCC---C
Confidence 000000 0000001234566789999998544 47766556666677 789999999999999998876 4
Q ss_pred CCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHH
Q 011700 135 GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYY 214 (479)
Q Consensus 135 g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l 214 (479)
|.+..++++ ..++..+ .. .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+
T Consensus 155 g~~~~~v~t---~~~~~~~----~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l 225 (468)
T 2qae_A 155 PFDEKVVLS---STGALAL----PR-VPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPT-LDEDVTNALVGAL 225 (468)
T ss_dssp CCCSSSEEC---HHHHHTC----SS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHH
T ss_pred CCCcCceec---hHHHhhc----cc-CCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccccc-CCHHHHHHHHHHH
Confidence 544345543 3333221 12 4799999999999999999999999999999999999985 8999999999999
Q ss_pred -HhCCcEEEcCCceEEEEEcCCCcEEEEEeC--CC--cEEeccEEEEecCCCCChhh--hh-ccccc-ccCcEEEcCccc
Q 011700 215 -KSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--DG--NRLPTDMVVVGIGIRPNTSL--FE-GQLTL-EKGGIKVTGRLQ 285 (479)
Q Consensus 215 -~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~--~g--~~i~~D~Vi~a~G~~p~~~l--~~-~~~~~-~~g~i~Vd~~l~ 285 (479)
+++||+++++++|++++.++++ + .+.+. +| +++++|.|++|+|++|++++ ++ .++.. ++|+|.||+++|
T Consensus 226 ~~~~gv~i~~~~~v~~i~~~~~~-~-~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~ 303 (468)
T 2qae_A 226 AKNEKMKFMTSTKVVGGTNNGDS-V-SLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFE 303 (468)
T ss_dssp HHHTCCEEECSCEEEEEEECSSS-E-EEEEECC---EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCTTSB
T ss_pred hhcCCcEEEeCCEEEEEEEcCCe-E-EEEEEcCCCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECCCcc
Confidence 9999999999999999874333 2 45554 66 67999999999999999986 33 35666 468899999999
Q ss_pred CCCCCeEEEeeecc-ccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceE--
Q 011700 286 SSNSSVYAVGDVAA-FPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV-- 362 (479)
Q Consensus 286 t~~~~IyA~GD~~~-~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~-- 362 (479)
|++|+|||+|||+. .+ ..+..|..||+.||.||++.....++..+|+ ..+++.+++++|+++.++
T Consensus 304 t~~~~IyA~GD~~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~--~~~~~~~~a~vG~~e~~a~~ 371 (468)
T 2qae_A 304 TSIPDVYAIGDVVDKGP----------MLAHKAEDEGVACAEILAGKPGHVNYGVIPA--VIYTMPEVASVGKSEDELKK 371 (468)
T ss_dssp CSSTTEEECGGGBSSSC----------SCHHHHHHHHHHHHHHHTTCCCCCCTTSCCE--EECSSSEEEEEECCHHHHHH
T ss_pred cCCCCEEEeeccCCCCC----------ccHhHHHHHHHHHHHHHcCCCccCCCCCCCE--EEECCCceEEEeCCHHHHHh
Confidence 99999999999998 43 4577899999999999998653345566674 567888999999986543
Q ss_pred ----EEEc------------cCCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcc
Q 011700 363 ----VHYG------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFA 423 (479)
Q Consensus 363 ----~~~~------------~~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a 423 (479)
+... ......|.++++ ++++|+|+|++|+++.|+ +.++.||+.++|++||.+++..||+++
T Consensus 372 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~ 451 (468)
T 2qae_A 372 EGVAYKVGKFPFNANSRAKAVSTEDGFVKVLVDKATDRILGVHIVCTTAGELIGEACLAMEYGASSEDVGRTCHAHPTMS 451 (468)
T ss_dssp TTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCTH
T ss_pred cCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHH
Confidence 1110 011245777666 489999999999999887 668999999999999999988888888
Q ss_pred cccCC
Q 011700 424 LAVSQ 428 (479)
Q Consensus 424 ~~~~~ 428 (479)
+.+.+
T Consensus 452 e~~~~ 456 (468)
T 2qae_A 452 EALKE 456 (468)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76644
No 33
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=100.00 E-value=3e-48 Score=405.19 Aligned_cols=399 Identities=22% Similarity=0.271 Sum_probs=297.7
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc-----c-cccccCCC---------CCCC-CCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA-----L-SKGYLLPE---------APAR-LPS 64 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~-----l-~~~~~~~~---------~~~~-~~~ 64 (479)
|+.++||||||||+||++||.+|++.|.+ |+|||+++.. ...+ + ++.++... .... ++.
T Consensus 40 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~---V~liE~~~~~--GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~ 114 (523)
T 1mo9_A 40 DPREYDAIFIGGGAAGRFGSAYLRAMGGR---QLIVDRWPFL--GGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPD 114 (523)
T ss_dssp CCSCBSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSS--SCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCC
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCC---EEEEeCCCCC--CCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHH
Confidence 34568999999999999999999999886 9999998631 1111 1 11000000 0000 111
Q ss_pred cccc------cCCcccCCCH---hHH-----HHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccc
Q 011700 65 FHTC------VGANEERLTP---KWY-----NEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEE 130 (479)
Q Consensus 65 ~~~~------~~~~~~~~~~---~~~-----~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~ 130 (479)
+... .......... .++ ++.+++++....+..++. +++.+. ++++.||+||||||++|..|++
T Consensus 115 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~~v~~~-g~~~~~d~lViATGs~p~~p~i 191 (523)
T 1mo9_A 115 MTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN--HTVEAA-GKVFKAKNLILAVGAGPGTLDV 191 (523)
T ss_dssp CTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEET--TEEEET-TEEEEBSCEEECCCEECCCCCS
T ss_pred HHhhhhhHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeC--CEEEEC-CEEEEeCEEEECCCCCCCCCCC
Confidence 0000 0000000122 456 678999984447787775 567765 6789999999999999998876
Q ss_pred cCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHH
Q 011700 131 FGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYY 210 (479)
Q Consensus 131 ~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~ 210 (479)
+|.+..++++..++ .+.+...++++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+
T Consensus 192 ---~G~~~~~v~~~~~~------~~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~~~~l 261 (523)
T 1mo9_A 192 ---PGVNAKGVFDHATL------VEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI-KDNETRAYV 261 (523)
T ss_dssp ---TTTTSBTEEEHHHH------HHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC-CSHHHHHHH
T ss_pred ---CCcccCcEeeHHHH------HHHHHhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccccc-ccHHHHHHH
Confidence 66555556643322 21233323399999999999999999999999999999999999886 899999999
Q ss_pred HHHHHhCCcEEEcCCceEEEEEcCCCcE--EEEEeCCCc-EEeccEEEEecCCCCChh-hhh-ccccc-ccCcEEEcCcc
Q 011700 211 EEYYKSKGVKFVKGTVLSSFDVDSNGKV--VAVNLRDGN-RLPTDMVVVGIGIRPNTS-LFE-GQLTL-EKGGIKVTGRL 284 (479)
Q Consensus 211 ~~~l~~~GV~i~~~~~v~~i~~~~~g~v--~~v~~~~g~-~i~~D~Vi~a~G~~p~~~-l~~-~~~~~-~~g~i~Vd~~l 284 (479)
.+.++++||+++++++|++++.++++++ ..+.+.+|+ ++++|.|++|+|++|+++ +++ .++.. ++|+|.||+++
T Consensus 262 ~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~~~gl~~~~~G~i~Vd~~~ 341 (523)
T 1mo9_A 262 LDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLVNEYL 341 (523)
T ss_dssp HHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCHHHHHHHTCCBCTTSCBCCCTTS
T ss_pred HHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCccCHHHcCCccCCCCCEEECCCC
Confidence 9999999999999999999987445543 457788887 899999999999999998 554 45666 57889999999
Q ss_pred cCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceE--
Q 011700 285 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV-- 362 (479)
Q Consensus 285 ~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~-- 362 (479)
||++|+|||+|||++.+ ..+..|..||+.||.||++.....++..+|++ .+++.+++++|+++.++
T Consensus 342 ~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~--~~~~~~~a~vG~~e~~a~~ 409 (523)
T 1mo9_A 342 QTSVPNVYAVGDLIGGP----------MEMFKARKSGCYAARNVMGEKISYTPKNYPDF--LHTHYEVSFLGMGEEEARA 409 (523)
T ss_dssp BCSSTTEEECGGGGCSS----------CSHHHHHHHHHHHHHHHTTCCCCCCCCSCCEE--EESSSEEEEEECCHHHHHH
T ss_pred ccCCCCEEEEeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeE--EECCCceEEEeCCHHHHHh
Confidence 99999999999999765 34678999999999999986533456778864 45788899999886532
Q ss_pred -----EE----Ecc-----------------------CCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCC
Q 011700 363 -----VH----YGN-----------------------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQP 407 (479)
Q Consensus 363 -----~~----~~~-----------------------~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~ 407 (479)
.. +.+ .....|.++.+ ++++|+|+|++|+++.|+ +.++.||+.++
T Consensus 410 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~ 489 (523)
T 1mo9_A 410 AGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQGL 489 (523)
T ss_dssp TTCCEEEEEESCCSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEEecccccccccccccccccccceEEeecCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCC
Confidence 11 111 11134666655 589999999999998887 66899999999
Q ss_pred CcCcHHHH--hhcCCCcccccCCC
Q 011700 408 VVEDLAEL--ETQGLGFALAVSQK 429 (479)
Q Consensus 408 ~~~dl~~~--~~~~~~~a~~~~~~ 429 (479)
|++||.++ +..||++++.+.+.
T Consensus 490 t~~~l~~~~~~~~~Pt~~e~~~~~ 513 (523)
T 1mo9_A 490 TVDELGDMDELFLNPTHFIQLSRL 513 (523)
T ss_dssp BHHHHHTSCCCSSCSCCHHHHHHH
T ss_pred CHHHHHhCCcceECCCHHHHHHHH
Confidence 99999998 88888888876543
No 34
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=100.00 E-value=5.1e-49 Score=409.13 Aligned_cols=396 Identities=19% Similarity=0.207 Sum_probs=293.6
Q ss_pred cCeEEEECCchHHHHHHHHHHHc---CCCCCcEEEEcCCCCCC--CCCCcc-cccccC---------CCCCCCCCCcccc
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKR---GVPPGELCIISEEPVAP--YERPAL-SKGYLL---------PEAPARLPSFHTC 68 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~---g~~~~~V~lie~~~~~~--~~~~~l-~~~~~~---------~~~~~~~~~~~~~ 68 (479)
++||||||||+||++||.+|+++ |.+ |+|||+++... .+..+. ++.++. ......++.+...
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~---V~liE~~~~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~ 78 (499)
T 1xdi_A 2 VTRIVILGGGPAGYEAALVAATSHPETTQ---VTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDD 78 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCTTTEE---EEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC-----
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCcCE---EEEEeCCCcCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCC
Confidence 38999999999999999999998 775 99999986200 000000 110000 0000011100000
Q ss_pred cCCc--------------ccCCCHhHHHHcCcEEEeCceEEEEECC----CcE--EEeCCCc--EEEeceEEeecCCCcc
Q 011700 69 VGAN--------------EERLTPKWYNEHGIELVLGTRVKSADVR----RKT--LVTATGE--TISYKILIIATGARAL 126 (479)
Q Consensus 69 ~~~~--------------~~~~~~~~~~~~gv~~~~~~~v~~i~~~----~~~--v~~~~g~--~~~~d~lviAtG~~~~ 126 (479)
...+ ......+++++.+++++.++ +..++.. ++. +...+++ ++.||+||+|||++|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p~ 157 (499)
T 1xdi_A 79 AKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGR-GELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPR 157 (499)
T ss_dssp -CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESE-EEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEEC
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCCC
Confidence 0000 00112455677899999984 7777762 233 4445665 7999999999999999
Q ss_pred cccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHH
Q 011700 127 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 206 (479)
Q Consensus 127 ~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~ 206 (479)
.|++ +|.+..++++..+..+. .. .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++
T Consensus 158 ~p~i---~g~~~~~v~~~~~~~~~-------~~-~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~ 225 (499)
T 1xdi_A 158 ILPS---AQPDGERILTWRQLYDL-------DA-LPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPY-EDADA 225 (499)
T ss_dssp CCGG---GCCCSSSEEEGGGGGGC-------SS-CCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCC-SSHHH
T ss_pred CCCC---CCCCcCcEEehhHhhhh-------hc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHH
Confidence 8887 55554556665544321 11 4799999999999999999999999999999999999987 89999
Q ss_pred HHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhh--hh-ccccc-ccCcEEEcC
Q 011700 207 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL--FE-GQLTL-EKGGIKVTG 282 (479)
Q Consensus 207 ~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l--~~-~~~~~-~~g~i~Vd~ 282 (479)
.+.+.+.++++||+++++++|++++.+ ++.+ .+.+.+|+++++|.|++|+|++|++++ ++ .++.. ++|+|.||+
T Consensus 226 ~~~l~~~l~~~GV~i~~~~~V~~i~~~-~~~v-~v~~~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~ 303 (499)
T 1xdi_A 226 ALVLEESFAERGVRLFKNARAASVTRT-GAGV-LVTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDR 303 (499)
T ss_dssp HHHHHHHHHHTTCEEETTCCEEEEEEC-SSSE-EEEETTSCEEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCS
T ss_pred HHHHHHHHHHCCCEEEeCCEEEEEEEe-CCEE-EEEECCCcEEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECC
Confidence 999999999999999999999999873 3333 577788889999999999999999986 33 35666 458899999
Q ss_pred cccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCC-CCCCCCCCCeEEEeecCcceEeecCCCce
Q 011700 283 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD-KTDKFDYLPFFYSRVFTLSWQFYGDNVGE 361 (479)
Q Consensus 283 ~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~~~~G~~~~~ 361 (479)
+|||++|+|||+|||+..+ ..+..|..||+.||+||++.. ...+|..+|+ ..+++.+++++|+++.+
T Consensus 304 ~~~t~~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~~~~a~vG~~e~~ 371 (499)
T 1xdi_A 304 VSRTLATGIYAAGDCTGLL----------PLASVAAMQGRIAMYHALGEGVSPIRLRTVAA--TVFTRPEIAAVGVPQSV 371 (499)
T ss_dssp SSBCSSTTEEECSGGGTSC----------SCHHHHHHHHHHHHHHHTTCCCCCCCGGGCEE--EECSSSEEEEEESCHHH
T ss_pred CcccCCCCEEEEeccCCCc----------ccHHHHHHHHHHHHHHhcCCCCccCCCCCCcE--EEEecCCceEeCCCHHH
Confidence 9999999999999999864 346789999999999999862 2345556775 55778899999998754
Q ss_pred EE------EEc------------cCCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCC
Q 011700 362 VV------HYG------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGL 420 (479)
Q Consensus 362 ~~------~~~------------~~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~ 420 (479)
+. ..+ ..+...|.++++ ++|+|+|+|++|+++.|+ +.++.||+.++|++||.+++..||
T Consensus 372 a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~P 451 (499)
T 1xdi_A 372 IDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLAVYP 451 (499)
T ss_dssp HHHTSSCEEEEEEESTTSHHHHHTTCSSCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSBCCSS
T ss_pred HHhCCCCEEEEEEecCcccceeecCCCceEEEEEEECCCCEEEEEEEECCchHHHHHHHHHHHHCCCCHHHHhcccccCC
Confidence 21 100 011245766665 379999999999999887 668999999999999999998999
Q ss_pred CcccccCCC
Q 011700 421 GFALAVSQK 429 (479)
Q Consensus 421 ~~a~~~~~~ 429 (479)
++++.+.+.
T Consensus 452 t~~e~~~~~ 460 (499)
T 1xdi_A 452 SLSGSITEA 460 (499)
T ss_dssp STHHHHHHH
T ss_pred CchHHHHHH
Confidence 988865443
No 35
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.7e-49 Score=406.70 Aligned_cols=398 Identities=18% Similarity=0.190 Sum_probs=291.4
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC---CCCcc-cccccC-------------CCCCCCCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPY---ERPAL-SKGYLL-------------PEAPARLP 63 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~---~~~~l-~~~~~~-------------~~~~~~~~ 63 (479)
|++++||+||||||||++||..|+++|++ |+|||+++.... ...++ ++.++. .....+++
T Consensus 1 M~~~~DVvVIGgG~aGl~aA~~l~~~G~~---V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~ 77 (466)
T 3l8k_A 1 MSLKYDVVVIGAGGAGYHGAFRLAKAKYN---VLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFS 77 (466)
T ss_dssp -CEEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHH
T ss_pred CCccceEEEECCCHHHHHHHHHHHhCCCe---EEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHH
Confidence 77789999999999999999999999987 999997653210 00010 000000 00000000
Q ss_pred CcccccCCc--cc--CCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCcE--EEeceEEeecCCCcccccccCCCCCC
Q 011700 64 SFHTCVGAN--EE--RLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGET--ISYKILIIATGARALKLEEFGLSGSD 137 (479)
Q Consensus 64 ~~~~~~~~~--~~--~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~--~~~d~lviAtG~~~~~~~~~g~~g~~ 137 (479)
.+....... .. .....++++.+++++.+ ++..++.+...+...++++ +.||+||||||++|+.|++ +|.+
T Consensus 78 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g-~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p~~p~i---~G~~ 153 (466)
T 3l8k_A 78 TVQDRKDYVQELRFKQHKRNMSQYETLTFYKG-YVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAKLRL---PGVE 153 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCTTEEEESE-EEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCCCC---TTGG
T ss_pred HHHHHHHhheeccccchHHHHHHhCCCEEEEe-EEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCccCCCC---CCcc
Confidence 000000000 00 11122334568999988 7888998777787888888 9999999999999998887 5544
Q ss_pred CCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhC
Q 011700 138 AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSK 217 (479)
Q Consensus 138 ~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~ 217 (479)
+++ +..++..+.+.+.. .+++++|||+|++|+|+|..|.++|.+|+++++.+++++..+++++.+.+.+.++
T Consensus 154 --~~~---t~~~~~~~~~~l~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~-- 225 (466)
T 3l8k_A 154 --YCL---TSDDIFGYKTSFRK-LPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILK-- 225 (466)
T ss_dssp --GSB---CHHHHHSTTCSCCS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHHHHHHHHHHC--
T ss_pred --ceE---eHHHHHHHHHHHhh-CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCCCCHHHHHHHHhcCE--
Confidence 232 33333322112222 4789999999999999999999999999999999999987449999999988876
Q ss_pred CcEEEcCCceEEEEEcCCCcEEEEEeC--CCc--EEeccEEEEecCCCCChhh--hhccccc-ccCcEEEcCcccCCCCC
Q 011700 218 GVKFVKGTVLSSFDVDSNGKVVAVNLR--DGN--RLPTDMVVVGIGIRPNTSL--FEGQLTL-EKGGIKVTGRLQSSNSS 290 (479)
Q Consensus 218 GV~i~~~~~v~~i~~~~~g~v~~v~~~--~g~--~i~~D~Vi~a~G~~p~~~l--~~~~~~~-~~g~i~Vd~~l~t~~~~ 290 (479)
|++++++.+++++.++++.+ .+.+. +|+ ++++|.|++|+|++|++.+ .+.++.. ++| |.||+++||++|+
T Consensus 226 -v~i~~~~~v~~i~~~~~~~v-~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~l~l~~~gl~~~~~G-i~vd~~~~t~~~~ 302 (466)
T 3l8k_A 226 -LNIKFNSPVTEVKKIKDDEY-EVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTG-IVVDETMKTNIPN 302 (466)
T ss_dssp -CCEECSCCEEEEEEEETTEE-EEEECCTTSCCEEEEESCEEECCCEEECCCTTTGGGTCCBCSSS-BCCCTTCBCSSTT
T ss_pred -EEEEECCEEEEEEEcCCCcE-EEEEEecCCceEEEEcCEEEECcCCCcccccchhhcCceeCCCC-EeECCCccCCCCC
Confidence 99999999999987432444 46676 665 7999999999999999983 3446666 466 9999999999999
Q ss_pred eEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCC--CC-CCCCCCCCeEEEeecCcceEeecCCCceEE----
Q 011700 291 VYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP--DK-TDKFDYLPFFYSRVFTLSWQFYGDNVGEVV---- 363 (479)
Q Consensus 291 IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~--~~-~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~---- 363 (479)
|||+|||++.+ .++..|..||+.||.||++. .. ..++..+|+ ..+++.+++++|+++.++.
T Consensus 303 Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~--~~~~~~~~a~vG~te~~a~~~g~ 370 (466)
T 3l8k_A 303 VFATGDANGLA----------PYYHAAVRMSIAAANNIMANGMPVDYVDVKSIPV--TIYTIPSLSYVGILPSKARKMGI 370 (466)
T ss_dssp EEECGGGTCSC----------CSHHHHHHHHHHHHHHHHTTTSCCCCCCSTTSCE--EECSSSCEEEEECCHHHHHHHTC
T ss_pred EEEEEecCCCC----------ccHhHHHHHHHHHHHHHhCCCCCccccCCCCCcE--EEECCCCeEEecCCHHHHHhCCC
Confidence 99999999864 45788999999999999976 32 245666774 5567888999999876531
Q ss_pred -----EE--cc-------CCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCccccc
Q 011700 364 -----HY--GN-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAV 426 (479)
Q Consensus 364 -----~~--~~-------~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~ 426 (479)
.+ .+ .....|.++.+ ++++|||+|++|+++.|+ +.++.||+.++|++||.+++..||++++.+
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~ 450 (466)
T 3l8k_A 371 EIVEAEYNMEEDVSAQIYGQKEGVLKLIFERGSMRLIGAWMIGVHSQYLINELGLAVAYGLNAKQLASFAEQHPSTNEII 450 (466)
T ss_dssp CEEEEEEEGGGSHHHHHHTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHCCCCTTSTTHHH
T ss_pred CEEEEEEEcccChhheecCCCeEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCcCCHHHHhccccCCCChHHHH
Confidence 11 01 01245666554 579999999999999998 568999999999999999998888888766
Q ss_pred CC
Q 011700 427 SQ 428 (479)
Q Consensus 427 ~~ 428 (479)
.+
T Consensus 451 ~~ 452 (466)
T 3l8k_A 451 SY 452 (466)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 36
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=100.00 E-value=3.5e-49 Score=407.24 Aligned_cols=397 Identities=20% Similarity=0.226 Sum_probs=292.1
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCcc-ccccc-----------CCC--CC-CCCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YERPAL-SKGYL-----------LPE--AP-ARLP 63 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~~~~l-~~~~~-----------~~~--~~-~~~~ 63 (479)
|++++||+|||||+||++||.+|+++|++ |+|||++.... .+..+. ++.++ .+. .. ...+
T Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~---V~lie~~~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~ 77 (467)
T 1zk7_A 1 MEPPVQVAVIGSGGAAMAAALKAVEQGAQ---VTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVP 77 (467)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSTTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCC
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCCCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCC
Confidence 78889999999999999999999998876 99999984210 000000 00000 000 00 0000
Q ss_pred C--cccccCC------ccc-CCCHhHHHHc-CcEEEeCceEEEEECCCcEEEeCCC--cEEEeceEEeecCCCccccccc
Q 011700 64 S--FHTCVGA------NEE-RLTPKWYNEH-GIELVLGTRVKSADVRRKTLVTATG--ETISYKILIIATGARALKLEEF 131 (479)
Q Consensus 64 ~--~~~~~~~------~~~-~~~~~~~~~~-gv~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~~~~~~~~ 131 (479)
. +...... ... ....+++++. +++++.+ .+..++....++.+.+| ++++||+||||||++|+.|++
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i- 155 (467)
T 1zk7_A 78 TIDRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHG-EARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPI- 155 (467)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEE-EEEEEETTEEEEEETTSSEEEEECSEEEECCCEEECCCCC-
T ss_pred ccCHHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEE-EEEEccCCEEEEEeCCCceEEEEeCEEEEeCCCCCCCCCC-
Confidence 0 0000000 000 0123455666 9999988 57788877666777777 689999999999999998887
Q ss_pred CCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHH
Q 011700 132 GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYE 211 (479)
Q Consensus 132 g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~ 211 (479)
+|.+...++ +..++.. +.. .+++++|||+|++|+|+|..|.++|.+|+++++.+++++ +++++.+.+.
T Consensus 156 --~G~~~~~~~---~~~~~~~----~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~~~~l~ 223 (467)
T 1zk7_A 156 --PGLKESPYW---TSTEALA----SDT-IPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR--EDPAIGEAVT 223 (467)
T ss_dssp --TTTTTSCCB---CHHHHHH----CSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT--SCHHHHHHHH
T ss_pred --CCCCcCcee---cHHHHhc----ccc-cCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC--CCHHHHHHHH
Confidence 555433333 2333222 122 479999999999999999999999999999999999888 7999999999
Q ss_pred HHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcCcccCC
Q 011700 212 EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRLQSS 287 (479)
Q Consensus 212 ~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~l~t~ 287 (479)
+.++++||+++++++|++++.+ ++ ...+.+. +.++++|.|++|+|++|+++++ ..++.. .+|+|.||+++||+
T Consensus 224 ~~l~~~Gv~i~~~~~v~~i~~~-~~-~~~v~~~-~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~ 300 (467)
T 1zk7_A 224 AAFRAEGIEVLEHTQASQVAHM-DG-EFVLTTT-HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTS 300 (467)
T ss_dssp HHHHHTTCEEETTCCEEEEEEE-TT-EEEEEET-TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBCS
T ss_pred HHHHhCCCEEEcCCEEEEEEEe-CC-EEEEEEC-CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCCcccC
Confidence 9999999999999999999863 33 3346665 4689999999999999998742 335665 46779999999999
Q ss_pred CCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceE-----
Q 011700 288 NSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV----- 362 (479)
Q Consensus 288 ~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~----- 362 (479)
.|+|||+|||+..+. .+..|..||+.+|.||++.....++..+|+ ..+++.+++.+|+++.++
T Consensus 301 ~~~iya~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~--~~~~~~~~a~vG~~~~~a~~~g~ 368 (467)
T 1zk7_A 301 NPNIYAAGDCTDQPQ----------FVYVAAAAGTRAAINMTGGDAALDLTAMPA--VVFTDPQVATVGYSEAEAHHDGI 368 (467)
T ss_dssp STTEEECSTTBSSCC----------CHHHHHHHHHHHHHHHTTCCCCCCCTTCEE--EECSSSEEEEEECCHHHHHHTTC
T ss_pred CCCEEEEeccCCCcc----------cHHHHHHHHHHHHHHHcCCCcccCCCCCCE--EEecCCceEEEecCHHHHHhcCC
Confidence 999999999998653 467899999999999998643345556664 456788899999876532
Q ss_pred --E--EEc---------cCCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCccccc
Q 011700 363 --V--HYG---------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAV 426 (479)
Q Consensus 363 --~--~~~---------~~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~ 426 (479)
. .+. ......|.++++ ++++|+|+|++|+++.|+ +.++.||+.++|++||.++...||++++.+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~ 448 (467)
T 1zk7_A 369 ETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSHRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGL 448 (467)
T ss_dssp CEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTSTTHHH
T ss_pred CeEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHH
Confidence 1 110 112245666665 489999999999999887 568999999999999999999999998876
Q ss_pred CCC
Q 011700 427 SQK 429 (479)
Q Consensus 427 ~~~ 429 (479)
.+.
T Consensus 449 ~~~ 451 (467)
T 1zk7_A 449 KLA 451 (467)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 37
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=100.00 E-value=1e-49 Score=412.25 Aligned_cols=397 Identities=20% Similarity=0.253 Sum_probs=292.1
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC----CCCCcccc------cccCC-----CCCCCCCCccc
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP----YERPALSK------GYLLP-----EAPARLPSFHT 67 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~----~~~~~l~~------~~~~~-----~~~~~~~~~~~ 67 (479)
++|||+|||||+||++||.+|+++|++ |+|||+++... +...++.. .++.. .....+..+..
T Consensus 2 ~~~DVvVIGgG~aGl~aA~~la~~G~~---V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~ 78 (476)
T 3lad_A 2 QKFDVIVIGAGPGGYVAAIKSAQLGLK---TALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGI 78 (476)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTCC---EEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTE
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCE---EEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 469999999999999999999999987 99999986211 00000000 00000 00000000000
Q ss_pred ccCC-----------------cccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCC--cEEEeceEEeecCCCcccc
Q 011700 68 CVGA-----------------NEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATG--ETISYKILIIATGARALKL 128 (479)
Q Consensus 68 ~~~~-----------------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~~~~~ 128 (479)
.... ........++++.+++++.++ +..++.....+...++ +++.||+||||||++|..|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~ 157 (476)
T 3lad_A 79 STGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGH-GKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEI 157 (476)
T ss_dssp ECSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESE-EEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCC
T ss_pred ccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEecCCEEEEEcCCCceEEEEcCEEEEcCCCCCCCC
Confidence 0000 000011234556799999984 4456666666666666 5799999999999999877
Q ss_pred cccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHH
Q 011700 129 EEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIAS 208 (479)
Q Consensus 129 ~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~ 208 (479)
+. .+.+...+++..+..+ +. ..+++++|||+|++|+|+|..|.+.|.+||++++.+++++. +++++.+
T Consensus 158 ~~---~~~~~~~v~~~~~~~~-------~~-~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~ 225 (476)
T 3lad_A 158 PP---APVDQDVIVDSTGALD-------FQ-NVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA-VDEQVAK 225 (476)
T ss_dssp TT---SCCCSSSEEEHHHHTS-------CS-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHH
T ss_pred CC---CCCCcccEEechhhhc-------cc-cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-cCHHHHH
Confidence 65 3334455655432211 11 25799999999999999999999999999999999999985 8999999
Q ss_pred HHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC---cEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEc
Q 011700 209 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG---NRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVT 281 (479)
Q Consensus 209 ~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g---~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd 281 (479)
.+.+.+++.||++++++++++++.++++ + .+.+.++ +++++|.|++|+|++|+++++ ..++.. ++|+|.||
T Consensus 226 ~l~~~l~~~Gv~v~~~~~v~~i~~~~~~-~-~v~~~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd 303 (476)
T 3lad_A 226 EAQKILTKQGLKILLGARVTGTEVKNKQ-V-TVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVD 303 (476)
T ss_dssp HHHHHHHHTTEEEEETCEEEEEEECSSC-E-EEEEESSSEEEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCC
T ss_pred HHHHHHHhCCCEEEECCEEEEEEEcCCE-E-EEEEEeCCCcEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeC
Confidence 9999999999999999999999874333 3 3555544 679999999999999999743 335665 57889999
Q ss_pred CcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCce
Q 011700 282 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGE 361 (479)
Q Consensus 282 ~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~ 361 (479)
+++||++|+|||+|||++.+ ..+..|..||+.||+||++.....++..+|+ ..+++.+++.+|+++.+
T Consensus 304 ~~~~t~~~~Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~~~~~~~a~vGlte~~ 371 (476)
T 3lad_A 304 DYCATSVPGVYAIGDVVRGA----------MLAHKASEEGVVVAERIAGHKAQMNYDLIPA--VIYTHPEIAGVGKTEQA 371 (476)
T ss_dssp TTSBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHHHCCCCCCTTCCCE--EECSSSEEEEEECCHHH
T ss_pred CCcccCCCCEEEEEccCCCc----------ccHHHHHHHHHHHHHHhcCCCcccCCCCCCE--EEECcCCEEEeeCCHHH
Confidence 99999999999999999654 3577899999999999998765456777886 45778889999998764
Q ss_pred EE------EEc-----cC-------CCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCC
Q 011700 362 VV------HYG-----NF-------SGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGL 420 (479)
Q Consensus 362 ~~------~~~-----~~-------~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~ 420 (479)
+. ..+ .. ....|.++.+ ++++|||+|++|+++.|+ +.++.||+.++|++||.+++..||
T Consensus 372 a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hP 451 (476)
T 3lad_A 372 LKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFAHP 451 (476)
T ss_dssp HHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSCCCSS
T ss_pred HHhcCCCEEEEEEeccccchheecCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCccCCC
Confidence 31 111 00 1235666554 689999999999999998 568999999999999999999999
Q ss_pred CcccccCCC
Q 011700 421 GFALAVSQK 429 (479)
Q Consensus 421 ~~a~~~~~~ 429 (479)
++++.+.+.
T Consensus 452 t~~e~~~~~ 460 (476)
T 3lad_A 452 ALSEALHEA 460 (476)
T ss_dssp CSHHHHHHH
T ss_pred ChHHHHHHH
Confidence 998876554
No 38
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=100.00 E-value=2.1e-48 Score=404.24 Aligned_cols=402 Identities=15% Similarity=0.184 Sum_probs=282.5
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCcccc-ccc----------------CCCC-CCCCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YERPALSK-GYL----------------LPEA-PARLPS 64 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~~~~l~~-~~~----------------~~~~-~~~~~~ 64 (479)
+||+|||||+||++||.+|++.|.+ |+|||+++... .+..+++. .++ .... ..+++.
T Consensus 3 ~dVvIIGgG~aGl~aA~~l~~~g~~---V~liE~~~~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 79 (500)
T 1onf_A 3 YDLIVIGGGSGGMAAARRAARHNAK---VALVEKSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPL 79 (500)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSTTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHH
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCcCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccCCccCHHH
Confidence 8999999999999999999998887 99999985210 01111110 000 0000 000000
Q ss_pred cccccC---CcccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCC-------------CcEEEeceEEeecCCCcccc
Q 011700 65 FHTCVG---ANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTAT-------------GETISYKILIIATGARALKL 128 (479)
Q Consensus 65 ~~~~~~---~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~-------------g~~~~~d~lviAtG~~~~~~ 128 (479)
+..... ......+..++++.+++++.++. ..++. +++.+.+ ++++.||+||||||++|..|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~-~~id~--~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~~p 156 (500)
T 1onf_A 80 LVERRDKYIQRLNNIYRQNLSKDKVDLYEGTA-SFLSE--NRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFP 156 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEEEESCC-CCC----------------------------CBSSEEECCCCCBCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEE-EEeeC--CEEEEEeccccccccccCCCceEEEeCEEEECCCCCCCCC
Confidence 000000 00000122345678999999853 33443 4555433 56799999999999999888
Q ss_pred cccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHH
Q 011700 129 EEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIAS 208 (479)
Q Consensus 129 ~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~ 208 (479)
++ +|.+ .+++. .++.. +. .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+
T Consensus 157 ~i---~G~~--~~~~~---~~~~~----~~--~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~ 221 (500)
T 1onf_A 157 PV---KGIE--NTISS---DEFFN----IK--ESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-FDESVIN 221 (500)
T ss_dssp SC---TTGG--GCEEH---HHHTT----CC--CCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT-SCHHHHH
T ss_pred CC---CCCC--cccCH---HHHhc----cC--CCCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcc-cchhhHH
Confidence 76 5542 33332 22211 12 2789999999999999999999999999999999999985 8999999
Q ss_pred HHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcE-EeccEEEEecCCCCChh-h-hh-cccccccCcEEEcCcc
Q 011700 209 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR-LPTDMVVVGIGIRPNTS-L-FE-GQLTLEKGGIKVTGRL 284 (479)
Q Consensus 209 ~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~-i~~D~Vi~a~G~~p~~~-l-~~-~~~~~~~g~i~Vd~~l 284 (479)
.+.+.++++||++++++++++++.++++. ..+.+.+|++ +++|.|++|+|++|+++ + ++ .++..++|+|.||+++
T Consensus 222 ~l~~~l~~~gv~i~~~~~v~~i~~~~~~~-~~v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~G~i~vd~~~ 300 (500)
T 1onf_A 222 VLENDMKKNNINIVTFADVVEIKKVSDKN-LSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIVVDENQ 300 (500)
T ss_dssp HHHHHHHHTTCEEECSCCEEEEEESSTTC-EEEEETTSCEEEEESEEEECCCBCCTTTTSSCTTTTCCBSSSCEEECTTC
T ss_pred HHHHHHHhCCCEEEECCEEEEEEEcCCce-EEEEECCCcEEEECCEEEECCCCCcCCCCCCchhcCccccCCEEEECCCc
Confidence 99999999999999999999998743343 3577889988 99999999999999996 4 33 3555567889999999
Q ss_pred cCCCCCeEEEeeeccccccc-----------------------cC-ceeecccHHHHHHHHHHHHHHHcCCCC-CCCCCC
Q 011700 285 QSSNSSVYAVGDVAAFPLKL-----------------------LG-ETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDY 339 (479)
Q Consensus 285 ~t~~~~IyA~GD~~~~~~~~-----------------------~g-~~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~ 339 (479)
||++|+|||+|||+..+... .+ ......++..|..||++||+||++... ..+|..
T Consensus 301 ~t~~~~iya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~ 380 (500)
T 1onf_A 301 RTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLKKTRKTNYKL 380 (500)
T ss_dssp BCSSSSEEECSTTEEEC------------------------------CBCCCCHHHHHHHHHHHHHHHHSCTTCCCCCSS
T ss_pred ccCCCCEEEEeccccccccccccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHHhCCCCccCCCCC
Confidence 99999999999999532100 00 002346789999999999999997542 245666
Q ss_pred CCeEEEeecCcceEeecCCCceEEE--------E----------------ccCCCCceEEEEc--cCCEEEEEEEeCCCH
Q 011700 340 LPFFYSRVFTLSWQFYGDNVGEVVH--------Y----------------GNFSGTTFGAYWV--NKGRLVGSFLEGGTK 393 (479)
Q Consensus 340 ~p~~~~~~~~~~~~~~G~~~~~~~~--------~----------------~~~~~~~~~~~~~--~~~~i~G~~~~g~~~ 393 (479)
+|+ ..+++.+++++|+++.++.. . .......|.++.+ ++++|+|+|++|+++
T Consensus 381 ~p~--~~~~~~~~a~vGl~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a 458 (500)
T 1onf_A 381 IPT--VIFSHPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIGLNA 458 (500)
T ss_dssp CCE--EECCSSCEEEEECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEEEEETTTTEEEEEEEESTTH
T ss_pred CCe--EEEcCcceEEEeCCHHHHHhcCCCccEEEEEEECchhhhhhccccccCCCceEEEEEEECCCCEEEEEEEECCCH
Confidence 775 45678889999988543311 1 0111245666655 689999999999999
Q ss_pred HHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCCCC
Q 011700 394 EEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQKP 430 (479)
Q Consensus 394 ~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~~~ 430 (479)
.|+ +.++.||+.++|++||.+++..||+++|.+.+..
T Consensus 459 ~~~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~ 496 (500)
T 1onf_A 459 DEIVQGFAVALKMNATKKDFDETIPIHPTAAEEFLTLQ 496 (500)
T ss_dssp HHHHHHHHHHHHTTCBHHHHHTSCCCTTCSTTHHHHCC
T ss_pred HHHHHHHHHHHHcCCCHHHHhccccCCCCHHHHHHHhc
Confidence 887 6689999999999999999999999998877664
No 39
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=100.00 E-value=2e-48 Score=403.97 Aligned_cols=399 Identities=19% Similarity=0.255 Sum_probs=285.3
Q ss_pred CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC---CCCcc-cccccCCCC-----CCCCCCcccccCC-
Q 011700 2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPY---ERPAL-SKGYLLPEA-----PARLPSFHTCVGA- 71 (479)
Q Consensus 2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~---~~~~l-~~~~~~~~~-----~~~~~~~~~~~~~- 71 (479)
|.++||+||||||||++||..|+++|++ |+|||+++.... +..+. ++.++.... ...++.+......
T Consensus 23 m~~~dVvVIGgG~aGl~aA~~la~~G~~---V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~ 99 (491)
T 3urh_A 23 MMAYDLIVIGSGPGGYVCAIKAAQLGMK---VAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANP 99 (491)
T ss_dssp ---CCEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCC
T ss_pred cccCCEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCC
Confidence 4469999999999999999999999987 999998753210 00000 000000000 0000000000000
Q ss_pred ----------------cccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCC--cEEEeceEEeecCCCcccccccCC
Q 011700 72 ----------------NEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATG--ETISYKILIIATGARALKLEEFGL 133 (479)
Q Consensus 72 ----------------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~~~~~~~~g~ 133 (479)
........++++.+++++.+. +..++.....+...+| +++.||+||||||++|. +++|+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~--~ipg~ 176 (491)
T 3urh_A 100 KLNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGT-GKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVA--GIPGV 176 (491)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESE-EEECSSSEEEEECTTSCEEEEECSEEEECCCEECC--CBTTB
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEecCCEEEEEeCCCceEEEEeCEEEEccCCCCC--CCCCc
Confidence 000112334567899999984 4445554455555566 57999999999999863 33222
Q ss_pred CC-CCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHH
Q 011700 134 SG-SDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEE 212 (479)
Q Consensus 134 ~g-~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~ 212 (479)
+. .+...+++ ..+... +. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+
T Consensus 177 ~~~~~~~~~~~---~~~~~~----~~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~ 247 (491)
T 3urh_A 177 EVAFDEKTIVS---STGALA----LE-KVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGG-MDGEVAKQLQR 247 (491)
T ss_dssp CCCCCSSSEEC---HHHHTS----CS-SCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSS-SCHHHHHHHHH
T ss_pred ccccCCeeEEe---hhHhhh----hh-hcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccccc-CCHHHHHHHHH
Confidence 21 12223332 222211 11 25799999999999999999999999999999999999986 89999999999
Q ss_pred HHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC---C--cEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcCc
Q 011700 213 YYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---G--NRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGR 283 (479)
Q Consensus 213 ~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~---g--~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~ 283 (479)
.+++.||++++++++.+++.++++ + .+.+.+ | +++++|.|++|+|++|+++++ ..++.. ++|+|.||++
T Consensus 248 ~l~~~gV~v~~~~~v~~i~~~~~~-~-~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~ 325 (491)
T 3urh_A 248 MLTKQGIDFKLGAKVTGAVKSGDG-A-KVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRH 325 (491)
T ss_dssp HHHHTTCEEECSEEEEEEEEETTE-E-EEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTT
T ss_pred HHHhCCCEEEECCeEEEEEEeCCE-E-EEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCC
Confidence 999999999999999999874333 2 344442 4 589999999999999999853 345666 5788999999
Q ss_pred ccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEE
Q 011700 284 LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV 363 (479)
Q Consensus 284 l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~ 363 (479)
+||++|+|||+|||++.+ ..+..|..||+.||++|++.....++..+|+ ..+++.+++++|+++.++.
T Consensus 326 ~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~~~~p~~a~vGlte~~a~ 393 (491)
T 3urh_A 326 FQTSIAGVYAIGDVVRGP----------MLAHKAEDEGVAVAEIIAGQAGHVNYDVIPG--VVYTQPEVASVGKTEEELK 393 (491)
T ss_dssp CBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHTTSCCCCCTTCCCE--EECSSSCEEEEECCHHHHH
T ss_pred CCCCCCCEEEEEecCCCc----------cchhHHHHHHHHHHHHHcCCCcccCCCCCCE--EEEccCCeEEEeCCHHHHH
Confidence 999999999999999755 4578899999999999998765456777886 4477889999999876531
Q ss_pred E------Ec-----c-------CCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCc
Q 011700 364 H------YG-----N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGF 422 (479)
Q Consensus 364 ~------~~-----~-------~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~ 422 (479)
. .+ . .....|.++.+ ++++|||+|++|+++.|+ +.++.||+.++|++||.+++..||++
T Consensus 394 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~ 473 (491)
T 3urh_A 394 AAGVAYKIGKFPFTANGRARAMLQTDGFVKILADKETDRVLGGHIIGFGAGEMIHEIAVLMEFGGSSEDLGRTCHAHPTM 473 (491)
T ss_dssp HTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCT
T ss_pred hCCCCEEEEEEecCcchhhhcCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCccCCCCh
Confidence 1 11 0 01235666554 589999999999999998 56899999999999999999999999
Q ss_pred ccccCCC
Q 011700 423 ALAVSQK 429 (479)
Q Consensus 423 a~~~~~~ 429 (479)
++.+.+.
T Consensus 474 ~e~~~~~ 480 (491)
T 3urh_A 474 SEAVKEA 480 (491)
T ss_dssp THHHHHH
T ss_pred HHHHHHH
Confidence 8876543
No 40
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=100.00 E-value=1.9e-48 Score=401.43 Aligned_cols=392 Identities=20% Similarity=0.247 Sum_probs=286.9
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcc------cccccC----------CCCCCCCC---
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPAL------SKGYLL----------PEAPARLP--- 63 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l------~~~~~~----------~~~~~~~~--- 63 (479)
+++||+||||||||+++|..|+++|++ |+|||++.. ...++ ++.++. ......++
T Consensus 2 ~~~dvvIIGaG~aGl~aA~~l~~~G~~---V~liE~~~~---gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~ 75 (464)
T 2a8x_A 2 THYDVVVLGAGPGGYVAAIRAAQLGLS---TAIVEPKYW---GGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEV 75 (464)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSCT---THHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCe---EEEEeCCCC---CCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 358999999999999999999999887 999999832 11110 000000 00000000
Q ss_pred --CcccccC------CcccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCC--cEEEeceEEeecCCCcccccccCC
Q 011700 64 --SFHTCVG------ANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATG--ETISYKILIIATGARALKLEEFGL 133 (479)
Q Consensus 64 --~~~~~~~------~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~~~~~~~~g~ 133 (479)
.+..... ......+.+++++.+++++.++.+. ++.+...+.+.+| ++++||+||+|||++|+.|++
T Consensus 76 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~-id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~~~~--- 151 (464)
T 2a8x_A 76 TFDYGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTF-ADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPG--- 151 (464)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEE-SSSSEEEEEETTSCCEEEEEEEEEECCCEEECCCTT---
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-ecCCeEEEEeCCCceEEEEcCEEEECCCCCCCCCCC---
Confidence 0000000 0000012345667899999886544 4443344555667 689999999999999988876
Q ss_pred CCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHH
Q 011700 134 SGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEY 213 (479)
Q Consensus 134 ~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~ 213 (479)
+|.+.. ++ +..++..+ .. .+++++|||+|++|+|+|..|.++|.+||++++.+++++. +++++.+.+.+.
T Consensus 152 ~g~~~~-~~---~~~~~~~~----~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~ 221 (464)
T 2a8x_A 152 TSLSAN-VV---TYEEQILS----RE-LPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPN-EDADVSKEIEKQ 221 (464)
T ss_dssp CCCBTT-EE---CHHHHHTC----SS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHH
T ss_pred CCCCce-EE---ecHHHhhc----cc-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHH
Confidence 444322 32 33333221 12 4799999999999999999999999999999999999985 899999999999
Q ss_pred HHhCCcEEEcCCceEEEEEcCCCcEEEEEeC-CC--cEEeccEEEEecCCCCChhh--hh-ccccc-ccCcEEEcCcccC
Q 011700 214 YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DG--NRLPTDMVVVGIGIRPNTSL--FE-GQLTL-EKGGIKVTGRLQS 286 (479)
Q Consensus 214 l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~-~g--~~i~~D~Vi~a~G~~p~~~l--~~-~~~~~-~~g~i~Vd~~l~t 286 (479)
++++||++++++++++++.+++ .+ .+.+. +| +++++|.|++|+|++|++++ ++ .++.. ++|+|.||+++||
T Consensus 222 l~~~gv~i~~~~~v~~i~~~~~-~~-~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t 299 (464)
T 2a8x_A 222 FKKLGVTILTATKVESIADGGS-QV-TVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRT 299 (464)
T ss_dssp HHHHTCEEECSCEEEEEEECSS-CE-EEEEESSSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCCTTSBC
T ss_pred HHHcCCEEEeCcEEEEEEEcCC-eE-EEEEEcCCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeECcCCcc
Confidence 9999999999999999987333 33 35554 56 67999999999999999986 33 35666 4688999999999
Q ss_pred CCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC-CCCC-CCCCCCCeEEEeecCcceEeecCCCceEE-
Q 011700 287 SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME-PDKT-DKFDYLPFFYSRVFTLSWQFYGDNVGEVV- 363 (479)
Q Consensus 287 ~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~-~~~~-~~~~~~p~~~~~~~~~~~~~~G~~~~~~~- 363 (479)
+.|+|||+|||+..+ ..+..|..||+.||.||++ .... .+|..+|+ ..+++.+++++|+++.++.
T Consensus 300 ~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~--~~~~~~~~a~vG~~e~~a~~ 367 (464)
T 2a8x_A 300 NVGHIYAIGDVNGLL----------QLAHVAEAQGVVAAETIAGAETLTLGDHRMLPR--ATFCQPNVASFGLTEQQARN 367 (464)
T ss_dssp SSTTEEECGGGGCSS----------CSHHHHHHHHHHHHHHHHTCCCCCCCCGGGSCE--EECSSSEEEEEECCHHHHHH
T ss_pred CCCCEEEeECcCCCc----------cCHHHHHHHHHHHHHHhcCCCCcccCCCCCCCE--EEECCCCeEEEcCCHHHHHh
Confidence 999999999999854 3567899999999999998 4433 34556675 5678889999999865431
Q ss_pred -----EEc------------cCCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcc
Q 011700 364 -----HYG------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFA 423 (479)
Q Consensus 364 -----~~~------------~~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a 423 (479)
..+ ......|.++++ ++++|+|+|++|+++.|+ +.++.||+.++|++||.+++..||+++
T Consensus 368 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~ 447 (464)
T 2a8x_A 368 EGYDVVVAKFPFTANAKAHGVGDPSGFVKLVADAKHGELLGGHLVGHDVAELLPELTLAQRWDLTASELARNVHTHPTMS 447 (464)
T ss_dssp TTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEEETTGGGGHHHHHHHHHTTCBHHHHTTSCCCTTCTT
T ss_pred cCCCEEEEEEEcchhhhhhhcCCCcEEEEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhhCccCCCChH
Confidence 110 011245777666 589999999999999886 668999999999999999988888888
Q ss_pred cccCC
Q 011700 424 LAVSQ 428 (479)
Q Consensus 424 ~~~~~ 428 (479)
+.+.+
T Consensus 448 e~~~~ 452 (464)
T 2a8x_A 448 EALQE 452 (464)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 41
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=100.00 E-value=1.4e-48 Score=402.12 Aligned_cols=392 Identities=21% Similarity=0.282 Sum_probs=287.4
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCcc-cccccCCCC---------CCCC---CCccc-
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YERPAL-SKGYLLPEA---------PARL---PSFHT- 67 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~~~~l-~~~~~~~~~---------~~~~---~~~~~- 67 (479)
++||+|||||+||++||.+|+++|.+ |+|||+++... .+..++ ++.++.... ...+ +.+..
T Consensus 6 ~~dvvIIG~G~aG~~aA~~l~~~g~~---V~lie~~~~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (464)
T 2eq6_A 6 TYDLIVIGTGPGGYHAAIRAAQLGLK---VLAVEAGEVGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELDLK 82 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEECHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCe---EEEEeCCCCCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcCHH
Confidence 58999999999999999999999886 99999986210 001111 110000000 0000 00000
Q ss_pred -ccC------CcccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCC
Q 011700 68 -CVG------ANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAEN 140 (479)
Q Consensus 68 -~~~------~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~ 140 (479)
... .........++++.+++++.++.+. ++ .+++.+. +++++||+||||||++|+.|+ ++++ + ..
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~--~~~v~v~-g~~~~~d~lViATGs~p~~p~--gi~~-~-~~ 154 (464)
T 2eq6_A 83 KLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARL-VG--PKEVEVG-GERYGAKSLILATGSEPLELK--GFPF-G-ED 154 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEE-EE--TTEEEET-TEEEEEEEEEECCCEEECCBT--TBCC-S-SS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEE-cc--CCEEEEc-cEEEEeCEEEEcCCCCCCCCC--CCCC-C-Cc
Confidence 000 0000012345667899999986543 55 4677776 678999999999999998876 3355 2 23
Q ss_pred eEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcE
Q 011700 141 VCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVK 220 (479)
Q Consensus 141 v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~ 220 (479)
++ +..++.. +....+++++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++.+.+.+.++++||+
T Consensus 155 v~---~~~~~~~----l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~gV~ 226 (464)
T 2eq6_A 155 VW---DSTRALK----VEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQ-GDPETAALLRRALEKEGIR 226 (464)
T ss_dssp EE---CHHHHTC----GGGCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHTTCE
T ss_pred EE---cHHHHHh----hhhhcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccc-cCHHHHHHHHHHHHhcCCE
Confidence 43 3333322 22224799999999999999999999999999999999999885 8999999999999999999
Q ss_pred EEcCCceEEEEEcCCCcEEEEEeC-C--Cc--EEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcCcccCCCCCe
Q 011700 221 FVKGTVLSSFDVDSNGKVVAVNLR-D--GN--RLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRLQSSNSSV 291 (479)
Q Consensus 221 i~~~~~v~~i~~~~~g~v~~v~~~-~--g~--~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~l~t~~~~I 291 (479)
+++++++++++.+ ++.+ .+.+. + |+ ++++|.|++|+|++|+++++ ..++.. ++|+|.||+++||+.|+|
T Consensus 227 i~~~~~v~~i~~~-~~~~-~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~I 304 (464)
T 2eq6_A 227 VRTKTKAVGYEKK-KDGL-HVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNARMETSVPGV 304 (464)
T ss_dssp EECSEEEEEEEEE-TTEE-EEEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCTTCBCSSTTE
T ss_pred EEcCCEEEEEEEe-CCEE-EEEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECCCcccCCCCE
Confidence 9999999999873 3333 46655 6 76 89999999999999999853 335665 578899999999999999
Q ss_pred EEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEE------EE
Q 011700 292 YAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV------HY 365 (479)
Q Consensus 292 yA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~------~~ 365 (479)
||+|||+..+ ..+..|..||+.||.||++.....++. +|+ ..+++.+++.+|+++.++. ..
T Consensus 305 ya~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~~~~~-~p~--~~~~~~~~a~vG~~e~~a~~~g~~~~~ 371 (464)
T 2eq6_A 305 YAIGDAARPP----------LLAHKAMREGLIAAENAAGKDSAFDYQ-VPS--VVYTSPEWAGVGLTEEEAKRAGYKVKV 371 (464)
T ss_dssp EECGGGTCSS----------CCHHHHHHHHHHHHHHHTTCCCCCCCC-CCE--EECSSSEEEEEECCHHHHHHTTCCEEE
T ss_pred EEEeccCCCc----------ccHHHHHHHHHHHHHHhcCCCcccCCC-CCe--EEECCCCEEEEeCCHHHHHhcCCCEEE
Confidence 9999999764 356789999999999999865334566 775 4567888999998865321 11
Q ss_pred c------------cCCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCCC
Q 011700 366 G------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQK 429 (479)
Q Consensus 366 ~------------~~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~~ 429 (479)
+ ..+...|.++++ ++++|+|+|++|+++.|+ +.++.||+.++|++||.+++..||++++.+.+.
T Consensus 372 ~~~~~~~~~~~~~~~~~~g~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~ 450 (464)
T 2eq6_A 372 GKFPLAASGRALTLGGAEGMVKVVGDEETDLLLGVFIVGPQAGELIAEAALALEMGATLTDLALTVHPHPTLSESLMEA 450 (464)
T ss_dssp EEEEGGGCHHHHHTSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCTTHHHHHH
T ss_pred EEEEcCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHH
Confidence 0 011245666665 489999999999999887 668999999999999999998888888776554
No 42
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=100.00 E-value=6.2e-48 Score=397.41 Aligned_cols=396 Identities=20% Similarity=0.252 Sum_probs=292.2
Q ss_pred CCC-cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCccc-ccccCC----CCCCCCCCcccccC--
Q 011700 1 MGR-AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YERPALS-KGYLLP----EAPARLPSFHTCVG-- 70 (479)
Q Consensus 1 M~~-~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~~~~l~-~~~~~~----~~~~~~~~~~~~~~-- 70 (479)
|++ ++||+|||||++|++||..|+++|++ |+|||++.... .+..+.+ +.++.. ......+.+.....
T Consensus 1 M~~~~~DVvVIGaG~aGl~aA~~la~~G~~---V~liEk~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~ 77 (463)
T 4dna_A 1 MSAFDYDLFVIGGGSGGVRSGRLAAALGKK---VAIAEEFRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGES 77 (463)
T ss_dssp --CCSEEEEEECCSHHHHHHHHHHHTTTCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCC
T ss_pred CCCCCCcEEEECcCHHHHHHHHHHHhCCCE---EEEEeCCCCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence 543 68999999999999999999999987 99999953210 0000000 000000 00000000000000
Q ss_pred ---------------CcccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEe-CCCcEEEeceEEeecCCCcc-cccccCC
Q 011700 71 ---------------ANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVT-ATGETISYKILIIATGARAL-KLEEFGL 133 (479)
Q Consensus 71 ---------------~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~-~~g~~~~~d~lviAtG~~~~-~~~~~g~ 133 (479)
.........++++.+++++.+ .+..+ +.+++.+ .+++++.||++|||||++|. .|++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i--~~~~v~~~~~~~~~~~d~lviAtG~~p~~~p~i--- 151 (463)
T 4dna_A 78 RFDWAKLVAAKEQEIARLEGLYRKGLANAGAEILDT-RAELA--GPNTVKLLASGKTVTAERIVIAVGGHPSPHDAL--- 151 (463)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEES-CEEES--SSSEEEETTTTEEEEEEEEEECCCEEECCCTTS---
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEe--eCCEEEEecCCeEEEeCEEEEecCCCcccCCCC---
Confidence 000011233455679999988 55544 4567777 57788999999999999998 7776
Q ss_pred CCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHH
Q 011700 134 SGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEY 213 (479)
Q Consensus 134 ~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~ 213 (479)
+|.+ .+ .+..+... +. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.
T Consensus 152 ~G~~--~~---~~~~~~~~----~~-~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~-~~~~~~~~l~~~ 220 (463)
T 4dna_A 152 PGHE--LC---ITSNEAFD----LP-ALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSR-FDQDMRRGLHAA 220 (463)
T ss_dssp TTGG--GC---BCHHHHTT----CS-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHH
T ss_pred CCcc--cc---ccHHHHhh----hh-cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHH
Confidence 5543 22 22222211 11 24799999999999999999999999999999999998875 899999999999
Q ss_pred HHhCCcEEEcCCceEEEEEcCCCcEEEEE-eCCCcEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcCcccCCC
Q 011700 214 YKSKGVKFVKGTVLSSFDVDSNGKVVAVN-LRDGNRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRLQSSN 288 (479)
Q Consensus 214 l~~~GV~i~~~~~v~~i~~~~~g~v~~v~-~~~g~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~l~t~~ 288 (479)
++++||++++++.|++++.++++. ..+. +.+|+ +++|.|++|+|++|++.++ +.++.. ++|+|.||+++||++
T Consensus 221 l~~~Gv~i~~~~~v~~i~~~~~~~-~~v~~~~~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~ 298 (463)
T 4dna_A 221 MEEKGIRILCEDIIQSVSADADGR-RVATTMKHGE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTST 298 (463)
T ss_dssp HHHTTCEEECSCCEEEEEECTTSC-EEEEESSSCE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTTCBCSS
T ss_pred HHHCCCEEECCCEEEEEEEcCCCE-EEEEEcCCCe-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcCCCCCC
Confidence 999999999999999998844443 3677 88887 9999999999999999853 345666 578899999999999
Q ss_pred CCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCC-CCCCCCCeEEEeecCcceEeecCCCceEE----
Q 011700 289 SSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSWQFYGDNVGEVV---- 363 (479)
Q Consensus 289 ~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~p~~~~~~~~~~~~~~G~~~~~~~---- 363 (479)
|+|||+|||++.+ .++..|..||+.+|+||++.... .++..+|+ ..+.+.+++.+|+++.++.
T Consensus 299 ~~iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~p~~a~vG~te~~a~~~~~ 366 (463)
T 4dna_A 299 PGIYALGDVTDRV----------QLTPVAIHEAMCFIETEYKNNPTSPDHDLIAT--AVFSQPEIGTVGITEEEAARKFQ 366 (463)
T ss_dssp TTEEECSGGGSSC----------CCHHHHHHHHHHHHHHHHSSCCCCCCCSCCCE--EECSSSCEEEEECCHHHHHHHSS
T ss_pred CCEEEEEecCCCC----------CChHHHHHHHHHHHHHHcCCCCcccCCCCCCE--EEECCCCeEEecCCHHHHHHcCC
Confidence 9999999999854 45778999999999999986532 46667775 4456788999999876431
Q ss_pred --E-----EccC-------CCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCccccc
Q 011700 364 --H-----YGNF-------SGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAV 426 (479)
Q Consensus 364 --~-----~~~~-------~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~ 426 (479)
. +... ....|.++.+ ++++|||+|++|++++|+ +.++.||+.++|++||.+++..||+++|.+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~ 446 (463)
T 4dna_A 367 EIEVYRAEFRPMKATLSGRKEKTIMKLVVNAADRKVVGAHILGHDAGEMAQLLGISLRAGCTKDDFDRTMAVHPTAAEEL 446 (463)
T ss_dssp EEEEEEEEECCTTHHHHCCCCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSGGGG
T ss_pred CeEEEEEeccccchhhcCCCceEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHH
Confidence 1 1111 1235666554 689999999999999998 568999999999999999999999999999
Q ss_pred CCCC
Q 011700 427 SQKP 430 (479)
Q Consensus 427 ~~~~ 430 (479)
.+..
T Consensus 447 ~~~~ 450 (463)
T 4dna_A 447 VTMY 450 (463)
T ss_dssp TCCC
T ss_pred HHHh
Confidence 8873
No 43
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=100.00 E-value=3.1e-48 Score=400.68 Aligned_cols=395 Identities=21% Similarity=0.243 Sum_probs=289.0
Q ss_pred CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcc------cccccCCC----------CCCCCC--
Q 011700 2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPAL------SKGYLLPE----------APARLP-- 63 (479)
Q Consensus 2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l------~~~~~~~~----------~~~~~~-- 63 (479)
+.++||+|||||+||+++|..|++.|++ |+|||+++... ..++ ++.++... ....++
T Consensus 4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~~---V~liE~~~~~G--G~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~ 78 (470)
T 1dxl_A 4 SDENDVVIIGGGPGGYVAAIKAAQLGFK---TTCIEKRGALG--GTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVS 78 (470)
T ss_dssp CCCCCEEEECCSHHHHHHHHHHHHHTCC---EEEEECSSSSC--CSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEES
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCCCcc--ccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 4569999999999999999999999887 99999985421 1111 00000000 000000
Q ss_pred ----Cccccc------CCcccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCC--cEEEeceEEeecCCCccccccc
Q 011700 64 ----SFHTCV------GANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATG--ETISYKILIIATGARALKLEEF 131 (479)
Q Consensus 64 ----~~~~~~------~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~~~~~~~~ 131 (479)
.+.... ..........++++.+++++.++.+. ++.+...+.+.+| ++++||+||+|||++|..|++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~p~~- 156 (470)
T 1dxl_A 79 NVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF-VSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPG- 156 (470)
T ss_dssp CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEE-EETTEEEECCSSSCCEEEECSEEEECCCEEECCBTT-
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-ecCCEEEEEeCCCceEEEEcCEEEECCCCCCCCCCC-
Confidence 000000 00000012345567799999997554 6665444555566 689999999999999998877
Q ss_pred CCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHH
Q 011700 132 GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYE 211 (479)
Q Consensus 132 g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~ 211 (479)
+|.+..++++ ..++.. +.. .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.
T Consensus 157 --~g~~~~~v~~---~~~~~~----~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~ 225 (470)
T 1dxl_A 157 --VTIDEKKIVS---STGALA----LSE-IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT-MDAEIRKQFQ 225 (470)
T ss_dssp --BCCCSSSEEC---HHHHTT----CSS-CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHH
T ss_pred --CCCCcccEEe---HHHhhh----hhh-cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc-ccHHHHHHHH
Confidence 4444344543 222221 111 4799999999999999999999999999999999999985 8999999999
Q ss_pred HHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC---CC--cEEeccEEEEecCCCCChhh--hh-ccccc-ccCcEEEcC
Q 011700 212 EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DG--NRLPTDMVVVGIGIRPNTSL--FE-GQLTL-EKGGIKVTG 282 (479)
Q Consensus 212 ~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~---~g--~~i~~D~Vi~a~G~~p~~~l--~~-~~~~~-~~g~i~Vd~ 282 (479)
+.+++.||++++++++.+++.++++ + .+.+. +| +++++|.|++|+|++|++++ ++ .++.. ++|+|.||+
T Consensus 226 ~~l~~~gv~i~~~~~v~~i~~~~~~-~-~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~ 303 (470)
T 1dxl_A 226 RSLEKQGMKFKLKTKVVGVDTSGDG-V-KLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNE 303 (470)
T ss_dssp HHHHHSSCCEECSEEEEEEECSSSS-E-EEEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCT
T ss_pred HHHHHcCCEEEeCCEEEEEEEcCCe-E-EEEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECc
Confidence 9999999999999999999863333 2 34443 44 68999999999999999986 33 35665 468899999
Q ss_pred cccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceE
Q 011700 283 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV 362 (479)
Q Consensus 283 ~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~ 362 (479)
++||+.|+|||+|||+..+ ..+..|..||+.||.||++.....+|..+|+ ..+++.+++++|+++.++
T Consensus 304 ~~~t~~~~Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~~~~~~~a~vG~~e~~a 371 (470)
T 1dxl_A 304 RFSTNVSGVYAIGDVIPGP----------MLAHKAEEDGVACVEYLAGKVGHVDYDKVPG--VVYTNPEVASVGKTEEQV 371 (470)
T ss_dssp TCBCSSTTEEECSTTSSSC----------CCHHHHHHHHHHHHHHHTTSCCCCCTTSCCE--EECSSSEEEEEECCHHHH
T ss_pred CCccCCCCEEEEeccCCCC----------ccHHHHHHHHHHHHHHHcCCCcCCCCCCCCE--EEECCCceEEEcCCHHHH
Confidence 9999999999999999754 3567899999999999998653344555674 567889999999986533
Q ss_pred ------EEEc------------cCCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCC
Q 011700 363 ------VHYG------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLG 421 (479)
Q Consensus 363 ------~~~~------------~~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~ 421 (479)
+..+ ......|.++++ ++++|+|+|++|+++.|+ +.++.||+.++|++||.+++..||+
T Consensus 372 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~Pt 451 (470)
T 1dxl_A 372 KETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPT 451 (470)
T ss_dssp HHTTCCEEEEEEEGGGCHHHHHHSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSC
T ss_pred HhcCCcEEEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCC
Confidence 1111 011245777666 489999999999999887 5689999999999999999888888
Q ss_pred cccccCC
Q 011700 422 FALAVSQ 428 (479)
Q Consensus 422 ~a~~~~~ 428 (479)
+++.+.+
T Consensus 452 ~~e~~~~ 458 (470)
T 1dxl_A 452 MSEAIKE 458 (470)
T ss_dssp TTHHHHH
T ss_pred hHHHHHH
Confidence 8776644
No 44
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=100.00 E-value=1.2e-47 Score=394.35 Aligned_cols=393 Identities=21% Similarity=0.254 Sum_probs=286.7
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCcc-cccccCC----CCCCCCCCcccccCC---c-
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YERPAL-SKGYLLP----EAPARLPSFHTCVGA---N- 72 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~~~~l-~~~~~~~----~~~~~~~~~~~~~~~---~- 72 (479)
++||+|||||+||++||.+|++.|++ |+|||++.... .+..++ ++.++.. .....+..+...... +
T Consensus 3 ~~dvvIIGgG~aGl~aA~~l~~~g~~---V~lie~~~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 79 (455)
T 1ebd_A 3 ETETLVVGAGPGGYVAAIRAAQLGQK---VTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDF 79 (455)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCe---EEEEECCCCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccCH
Confidence 58999999999999999999999886 99999983210 000011 1100000 000000000000000 0
Q ss_pred -------------ccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCC-cEEEeceEEeecCCCcccccccCCCCCCC
Q 011700 73 -------------EERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATG-ETISYKILIIATGARALKLEEFGLSGSDA 138 (479)
Q Consensus 73 -------------~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g-~~~~~d~lviAtG~~~~~~~~~g~~g~~~ 138 (479)
....+.+++++.+++++.++.+ .++.+...+.+.+| ++++||+||+|||++|..|++ +|.+.
T Consensus 80 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~-~id~~~v~V~~~~G~~~i~~d~lViATGs~p~~~~~---~g~~~ 155 (455)
T 1ebd_A 80 AKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAY-FVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELPN---FKFSN 155 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEE-EEETTEEEEEETTEEEEEECSEEEECCCEEECCBTT---BCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-EccCCeEEEEeCCCcEEEEeCEEEEecCCCCCCCCC---CCccc
Confidence 0001234556789999999654 47765556666666 689999999999999988876 44332
Q ss_pred CCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCC
Q 011700 139 ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKG 218 (479)
Q Consensus 139 ~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~G 218 (479)
.++ +..++.. +.. .+++++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++.+.+.+.++++|
T Consensus 156 -~v~---~~~~~~~----~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~g 225 (455)
T 1ebd_A 156 -RIL---DSTGALN----LGE-VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKG 225 (455)
T ss_dssp -SEE---CHHHHHT----CSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTT
T ss_pred -eEe---cHHHHhc----ccc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc-cCHHHHHHHHHHHHHCC
Confidence 233 3333322 111 4799999999999999999999999999999999999886 89999999999999999
Q ss_pred cEEEcCCceEEEEEcCCCcEEEEEeC---CCcEEeccEEEEecCCCCChhh--hh-ccccc-ccCcEEEcCcccCCCCCe
Q 011700 219 VKFVKGTVLSSFDVDSNGKVVAVNLR---DGNRLPTDMVVVGIGIRPNTSL--FE-GQLTL-EKGGIKVTGRLQSSNSSV 291 (479)
Q Consensus 219 V~i~~~~~v~~i~~~~~g~v~~v~~~---~g~~i~~D~Vi~a~G~~p~~~l--~~-~~~~~-~~g~i~Vd~~l~t~~~~I 291 (479)
|+++++++|++++.++ +.+ .+.+. +++++++|.|++|+|++|++++ ++ .++.. ++|+|.||++|||+.|+|
T Consensus 226 v~i~~~~~v~~i~~~~-~~~-~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~I 303 (455)
T 1ebd_A 226 VEVVTNALAKGAEERE-DGV-TVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNI 303 (455)
T ss_dssp CEEEESEEEEEEEEET-TEE-EEEEEETTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTTCBCSSTTE
T ss_pred CEEEeCCEEEEEEEeC-CeE-EEEEEeCCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCCCcccCCCCE
Confidence 9999999999998733 322 34443 4568999999999999999986 33 34665 468899999999999999
Q ss_pred EEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceE------EEE
Q 011700 292 YAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV------VHY 365 (479)
Q Consensus 292 yA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~------~~~ 365 (479)
||+|||+..+ ..+..|..||+.||+||.+.....+|..+|+ ..+++.+++++|+++.++ +..
T Consensus 304 ya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~--~~~~~~~~a~vG~~e~~a~~~g~~~~~ 371 (455)
T 1ebd_A 304 FAIGDIVPGP----------ALAHKASYEGKVAAEAIAGHPSAVDYVAIPA--VVFSDPECASVGYFEQQAKDEGIDVIA 371 (455)
T ss_dssp EECGGGSSSC----------CCHHHHHHHHHHHHHHHTSCCCCCCCSCCCE--EECSSSCEEEEECCHHHHHTTTCCEEE
T ss_pred EEEeccCCCc----------ccHHHHHHHHHHHHHHHcCCCccCCCCCCCE--EEECCCceEEEeCCHHHHHhcCCCEEE
Confidence 9999999754 3467899999999999998643345556674 567888999999876543 111
Q ss_pred c------------cCCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccC
Q 011700 366 G------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVS 427 (479)
Q Consensus 366 ~------------~~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~ 427 (479)
+ ......|.++++ ++++|+|+|++|+++.|+ +.++.||+.++|++||.+++..||++++.+.
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~ 448 (455)
T 1ebd_A 372 AKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGEIAM 448 (455)
T ss_dssp EEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTSSTHHHH
T ss_pred EEEEcCcchHHhhcCCCcEEEEEEEECCCCEEEEEEEeCCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHH
Confidence 1 011245767665 489999999999999887 6689999999999999999988888877654
No 45
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=100.00 E-value=3.8e-48 Score=401.06 Aligned_cols=390 Identities=21% Similarity=0.232 Sum_probs=290.9
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCccc-c----------------cccCCCCCCCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YERPALS-K----------------GYLLPEAPARLPS 64 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~~~~l~-~----------------~~~~~~~~~~~~~ 64 (479)
++||+|||||+||++||.+|+++|++ |+|||++.... .+..+.+ + .+-.... .+.
T Consensus 26 ~~DVvVIGgG~aGl~aA~~la~~G~~---V~liEk~~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~---~~~ 99 (484)
T 3o0h_A 26 DFDLFVIGSGSGGVRAARLAGALGKR---VAIAEEYRIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYA---DPI 99 (484)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCC---CCE
T ss_pred CCCEEEECcCHHHHHHHHHHHhCcCE---EEEEeCCCCCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccC---CCc
Confidence 58999999999999999999999987 99999954210 0000000 0 0000000 000
Q ss_pred cccc--------cCCcccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeC-CCcEEEeceEEeecCCCcc-cccccCCC
Q 011700 65 FHTC--------VGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTA-TGETISYKILIIATGARAL-KLEEFGLS 134 (479)
Q Consensus 65 ~~~~--------~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~-~g~~~~~d~lviAtG~~~~-~~~~~g~~ 134 (479)
+... ............+++.+++++.+ .+..++ .+++.+. +++++.||++|||||+.|. .|++ +
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~i~--~~~v~v~~~~~~~~~d~lviAtG~~p~~~p~i---~ 173 (484)
T 3o0h_A 100 FNWEKLVAAKNKEISRLEGLYREGLQNSNVHIYES-RAVFVD--EHTLELSVTGERISAEKILIATGAKIVSNSAI---K 173 (484)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEEEE--TTEEEETTTCCEEEEEEEEECCCEEECCC--C---B
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEee--CCEEEEecCCeEEEeCEEEEccCCCcccCCCC---C
Confidence 0000 00000011234456779999998 566665 4567776 7788999999999999998 7776 5
Q ss_pred CCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHH
Q 011700 135 GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYY 214 (479)
Q Consensus 135 g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l 214 (479)
|.+ .+++..++... . ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+
T Consensus 174 G~~--~~~~~~~~~~~-------~-~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l 242 (484)
T 3o0h_A 174 GSD--LCLTSNEIFDL-------E-KLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRN-FDYDLRQLLNDAM 242 (484)
T ss_dssp TGG--GSBCTTTGGGC-------S-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHH
T ss_pred Ccc--ccccHHHHHhH-------H-hcCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccccc-cCHHHHHHHHHHH
Confidence 433 23333332211 1 14799999999999999999999999999999999998886 8999999999999
Q ss_pred HhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcCcccCCCCC
Q 011700 215 KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRLQSSNSS 290 (479)
Q Consensus 215 ~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~l~t~~~~ 290 (479)
++.||++++++.|++++.+ ++.+ .+.+.+|+++++|.|++|+|++|++.++ ..++.. ++|+|.||+++||++|+
T Consensus 243 ~~~Gv~i~~~~~V~~i~~~-~~~v-~v~~~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~ 320 (484)
T 3o0h_A 243 VAKGISIIYEATVSQVQST-ENCY-NVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSH 320 (484)
T ss_dssp HHHTCEEESSCCEEEEEEC-SSSE-EEEETTSCEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTTSBCSSTT
T ss_pred HHCCCEEEeCCEEEEEEee-CCEE-EEEECCCcEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCCCCCCCCC
Confidence 9999999999999999874 3344 6888999999999999999999999853 345666 56889999999999999
Q ss_pred eEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCC-CCCCCCCeEEEeecCcceEeecCCCceEEEEc---
Q 011700 291 VYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG--- 366 (479)
Q Consensus 291 IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~--- 366 (479)
|||+|||++.+ ..+..|..||+.+|+||++.... .++..+|+ ..+++.+++.+|+++.++...|
T Consensus 321 Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~--~~~~~p~~a~vGlte~~a~~~g~~~ 388 (484)
T 3o0h_A 321 IWAVGDVTGHI----------QLTPVAIHDAMCFVKNAFENTSTTPDYDLITT--AVFSQPEIGTVGLSEEDALHRYKRV 388 (484)
T ss_dssp EEECGGGGTSC----------CCHHHHHHHHHHHHHHHHC---CCCCCTTCCE--EECCSSCEEEEECCHHHHHHHCSEE
T ss_pred EEEEEecCCCC----------cCHHHHHHHHHHHHHHHcCCCCCcCCCCCCcE--EEECCCCEEEeeCCHHHHHHcCCCE
Confidence 99999999854 45778999999999999986432 46677786 4456788999999876532111
Q ss_pred --------c-------CCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCC
Q 011700 367 --------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQ 428 (479)
Q Consensus 367 --------~-------~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~ 428 (479)
. .....|.++.+ ++++|||+|++|++++|+ +.++.||+.++|++||.+++..||+++|.+.+
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~ 468 (484)
T 3o0h_A 389 EIYRTVFRPMRNVLSGSPEKMFMKLVVDGESRIVVGAHVLGENAGEIAQLIGISLKGKLTKDIFDKTMAVHPTMSEELVT 468 (484)
T ss_dssp EEEEEEECCHHHHHHTCCCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGGGGC
T ss_pred EEEEecCCcchhhccCCCCcEEEEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhccccCCCChHHHHHH
Confidence 0 01245666554 689999999999999998 56899999999999999999999999999988
Q ss_pred CC
Q 011700 429 KP 430 (479)
Q Consensus 429 ~~ 430 (479)
..
T Consensus 469 ~~ 470 (484)
T 3o0h_A 469 MY 470 (484)
T ss_dssp CC
T ss_pred Hh
Confidence 73
No 46
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=100.00 E-value=6e-48 Score=399.27 Aligned_cols=400 Identities=20% Similarity=0.238 Sum_probs=283.7
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC---CCCcc-cccccCCCC----C-CCCCCccccc-C
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPY---ERPAL-SKGYLLPEA----P-ARLPSFHTCV-G 70 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~---~~~~l-~~~~~~~~~----~-~~~~~~~~~~-~ 70 (479)
|++++||+||||||||+++|..|+++|++ |+|||+++.... +..++ ++.++.... . ...+.+.... .
T Consensus 2 M~~~~dVvIIGgG~aGl~aA~~l~~~G~~---V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~ 78 (478)
T 1v59_A 2 INKSHDVVIIGGGPAGYVAAIKAAQLGFN---TACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNG 78 (478)
T ss_dssp EEEEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECS
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCC
Confidence 55679999999999999999999999886 999999643210 00000 000000000 0 0000000000 0
Q ss_pred C---c--------------ccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCC--cE------EEeceEEeecCCCc
Q 011700 71 A---N--------------EERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATG--ET------ISYKILIIATGARA 125 (479)
Q Consensus 71 ~---~--------------~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g--~~------~~~d~lviAtG~~~ 125 (479)
. . ......+++++.+++++.++.+. .+....++.+.+| ++ ++||+||+|||++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p 157 (478)
T 1v59_A 79 DIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSF-EDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEV 157 (478)
T ss_dssp CEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEE-SSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEE
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE-ccCCeEEEEecCCCcccccccceEEeCEEEECcCCCC
Confidence 0 0 00012345667899999996654 2333334444555 56 99999999999988
Q ss_pred ccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHH
Q 011700 126 LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK 205 (479)
Q Consensus 126 ~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~ 205 (479)
+. + ||.+..+ ..+.+..++..+ .. .+++++|||+|++|+|+|..|+++|.+||++++.+++++. ++++
T Consensus 158 ~~--~---~g~~~~~-~~v~~~~~~~~~----~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~ 225 (478)
T 1v59_A 158 TP--F---PGIEIDE-EKIVSSTGALSL----KE-IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS-MDGE 225 (478)
T ss_dssp CC--C---TTCCCCS-SSEECHHHHTTC----SS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS-SCHH
T ss_pred CC--C---CCCCCCC-ceEEcHHHHHhh----hc-cCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccc-cCHH
Confidence 43 2 3322222 112233333222 12 4799999999999999999999999999999999999984 8999
Q ss_pred HHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC-----CCcEEeccEEEEecCCCCChh--hhh-ccccc-ccC
Q 011700 206 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-----DGNRLPTDMVVVGIGIRPNTS--LFE-GQLTL-EKG 276 (479)
Q Consensus 206 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~-----~g~~i~~D~Vi~a~G~~p~~~--l~~-~~~~~-~~g 276 (479)
+.+.+.+.+++.||++++++++++++..+++....+.+. +++++++|.|++|+|++|+++ +++ .++.. ++|
T Consensus 226 ~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G 305 (478)
T 1v59_A 226 VAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRG 305 (478)
T ss_dssp HHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTTTTTCCBCTTS
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCchhcCceeCCCC
Confidence 999999999999999999999999986213333455554 356899999999999999997 444 35666 478
Q ss_pred cEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeec
Q 011700 277 GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYG 356 (479)
Q Consensus 277 ~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G 356 (479)
+|.||++|||+.|+|||+|||+..+ ..+..|..||+.||+||++.....+|..+|+ ..+++.+++++|
T Consensus 306 ~i~vd~~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~--~~~~~~~~a~vG 373 (478)
T 1v59_A 306 RLVIDDQFNSKFPHIKVVGDVTFGP----------MLAHKAEEEGIAAVEMLKTGHGHVNYNNIPS--VMYSHPEVAWVG 373 (478)
T ss_dssp CBCCCTTSBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHHHSCCCCCTTSCCE--EECSSSEEEEEE
T ss_pred CEeECcCCccCCCCEEEeeccCCCc----------ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCE--EEEcCCcEEEEE
Confidence 8999999999999999999999864 3467899999999999997554346777885 446778899999
Q ss_pred CCCceEE------EEc------------cCCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHH
Q 011700 357 DNVGEVV------HYG------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAEL 415 (479)
Q Consensus 357 ~~~~~~~------~~~------------~~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~ 415 (479)
+++.++. ... ......|.+++. ++++|+|+|++|+++.|+ +.++.+|+.++|++|+.++
T Consensus 374 ~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~ 453 (478)
T 1v59_A 374 KTEEQLKEAGIDYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARV 453 (478)
T ss_dssp CCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTS
T ss_pred CCHHHHHHcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhC
Confidence 9865431 110 011234555544 489999999999998886 6689999999999999999
Q ss_pred hhcCCCcccccCC
Q 011700 416 ETQGLGFALAVSQ 428 (479)
Q Consensus 416 ~~~~~~~a~~~~~ 428 (479)
+..||++++.+.+
T Consensus 454 ~~~~Pt~~e~~~~ 466 (478)
T 1v59_A 454 CHAHPTLSEAFKE 466 (478)
T ss_dssp CCCTTCTTHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 8888888776543
No 47
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=100.00 E-value=1.3e-47 Score=407.11 Aligned_cols=415 Identities=17% Similarity=0.198 Sum_probs=290.6
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc-cccc----------ccCC------------CCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA-LSKG----------YLLP------------EAP 59 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~-l~~~----------~~~~------------~~~ 59 (479)
.++||+||||||||++||.+|+++|++ |+|||+....+..... +... .+.. ...
T Consensus 106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~---v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g 182 (598)
T 2x8g_A 106 YDYDLIVIGGGSGGLAAGKEAAKYGAK---TAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFG 182 (598)
T ss_dssp SSEEEEEECCSHHHHHHHHHHHHTTCC---EEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccEEEECCCccHHHHHHHHHhCCCe---EEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCC
Confidence 358999999999999999999999987 9999974211111000 0000 0000 000
Q ss_pred CCCCCcccccC-CcccC-----------CCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCC--cEEEeceEEeecCCCc
Q 011700 60 ARLPSFHTCVG-ANEER-----------LTPKWYNEHGIELVLGTRVKSADVRRKTLVTATG--ETISYKILIIATGARA 125 (479)
Q Consensus 60 ~~~~~~~~~~~-~~~~~-----------~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~~ 125 (479)
...+....... ..... .....++..+++++.+ ....++.....+...+| +++.||+||||||++|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~~~~~~~v~v~~~~g~~~~~~~d~lviAtGs~p 261 (598)
T 2x8g_A 183 WSLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNA-KGRLISPHEVQITDKNQKVSTITGNKIILATGERP 261 (598)
T ss_dssp CCCCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEETTEEEEECTTCCEEEEEEEEEEECCCEEE
T ss_pred ccccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEcCCCEEEEEeCCCCeEEEEeCEEEEeCCCCC
Confidence 00000000000 00000 0112245678999877 55666665444444556 4799999999999999
Q ss_pred ccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHH
Q 011700 126 LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK 205 (479)
Q Consensus 126 ~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~ 205 (479)
+.|++ ||.+. ...+. .++. . +. ..+++++|||+|++|+|+|..|+++|.+||++++. .+++. ++++
T Consensus 262 ~~p~i---~G~~~-~~~~~---~~~~---~-~~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~~-~d~~ 327 (598)
T 2x8g_A 262 KYPEI---PGAVE-YGITS---DDLF---S-LP-YFPGKTLVIGASYVALECAGFLASLGGDVTVMVRS-ILLRG-FDQQ 327 (598)
T ss_dssp CCCSS---TTHHH-HCEEH---HHHT---T-CS-SCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTT-SCHH
T ss_pred CCCCC---CCccc-ceEcH---HHHh---h-Cc-cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC-cCcCc-CCHH
Confidence 88876 55321 12221 1111 1 11 24789999999999999999999999999999988 66664 8999
Q ss_pred HHHHHHHHHHhCCcEEEcCCceEEEEEc-----CC---CcE-EEEEeCCCcEEe--ccEEEEecCCCCChhhh---hccc
Q 011700 206 IASYYEEYYKSKGVKFVKGTVLSSFDVD-----SN---GKV-VAVNLRDGNRLP--TDMVVVGIGIRPNTSLF---EGQL 271 (479)
Q Consensus 206 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~-----~~---g~v-~~v~~~~g~~i~--~D~Vi~a~G~~p~~~l~---~~~~ 271 (479)
+.+.+.+.++++||++++++.+.+++.. ++ +.+ ..+.+.+|++++ +|.|++|+|++|+++++ ..++
T Consensus 328 ~~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl 407 (598)
T 2x8g_A 328 MAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGV 407 (598)
T ss_dssp HHHHHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECGGGTBCGGGCC
T ss_pred HHHHHHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccccCccCchhcCc
Confidence 9999999999999999999988888642 12 333 223456777655 99999999999999864 2346
Q ss_pred cc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEeecC
Q 011700 272 TL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFT 349 (479)
Q Consensus 272 ~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~p~~~~~~~~ 349 (479)
.. ++|+|.||+++||++|+|||+|||+.... ..+..|..||+.||.||++... ..+|..+|+ ..+++
T Consensus 408 ~~~~~G~i~vd~~~~ts~~~VyA~GD~~~~~~---------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~--~~~~~ 476 (598)
T 2x8g_A 408 KLDKNGRVVCTDDEQTTVSNVYAIGDINAGKP---------QLTPVAIQAGRYLARRLFAGATELTDYSNVAT--TVFTP 476 (598)
T ss_dssp CBCTTSCBCCCTTSBCSSTTEEECGGGBTTSC---------CCHHHHHHHHHHHHHHHHHCCCCCCCCTTCCE--EECSS
T ss_pred eECCCCcEEeCCCCcCCCCCEEEEeeecCCCC---------ccHHHHHHhHHHHHHHHhcCCCcccCCCCCcE--EEECC
Confidence 65 56889999999999999999999964321 4577899999999999997543 245666775 45678
Q ss_pred cceEeecCCCceEE--------EEc-------------cCCCCceEEEEc---cCCEEEEEEEeCCCHHHH-HHHHHHHH
Q 011700 350 LSWQFYGDNVGEVV--------HYG-------------NFSGTTFGAYWV---NKGRLVGSFLEGGTKEEY-EAIAKATR 404 (479)
Q Consensus 350 ~~~~~~G~~~~~~~--------~~~-------------~~~~~~~~~~~~---~~~~i~G~~~~g~~~~e~-~~~~~~i~ 404 (479)
++++++|+++.++. ... +.....|.++.+ ++++|+|+|++|+++.|+ +.++.||+
T Consensus 477 ~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~ 556 (598)
T 2x8g_A 477 LEYGACGLSEEDAIEKYGDKDIEVYHSNFKPLEWTVAHREDNVCYMKLVCRKSDNMRVLGLHVLGPNAGEITQGYAVAIK 556 (598)
T ss_dssp SCEEEEECCHHHHHHHHCGGGEEEEEEEECCTHHHHTTCCSSCEEEEEEEETTTTTEEEEEEEESTTHHHHHHHHHHHHH
T ss_pred CceEEEeCCHHHHHhhCCCCcEEEEEEeccchhHHhhcCCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHH
Confidence 88999998764431 110 011245666654 389999999999999997 56899999
Q ss_pred cCCCcCcHHHHhhcCCCcccccCCCCCCCCCCCCCccccccc
Q 011700 405 LQPVVEDLAELETQGLGFALAVSQKPLPSTPVDGKTVPGLVL 446 (479)
Q Consensus 405 ~~~~~~dl~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 446 (479)
.++|++||.+++..||++++.+.+...++.++.+.++.+||+
T Consensus 557 ~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~~~~~~~~~~~~ 598 (598)
T 2x8g_A 557 MGATKADFDRTIGIHPTCSETFTTLHVTKKSGVSPIVSGCCG 598 (598)
T ss_dssp TTCBHHHHHHSCCCSSCSGGGGGSCCCBSTTCCCCCC-----
T ss_pred cCCCHHHHhhccccCCCHHHHHHHHHHhhhcccchhhcccCC
Confidence 999999999999999999999999877677777888888985
No 48
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=100.00 E-value=1.2e-48 Score=405.29 Aligned_cols=393 Identities=15% Similarity=0.094 Sum_probs=283.5
Q ss_pred CCC-cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccc------ccccCC----CCCCCCCCccccc
Q 011700 1 MGR-AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALS------KGYLLP----EAPARLPSFHTCV 69 (479)
Q Consensus 1 M~~-~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~------~~~~~~----~~~~~~~~~~~~~ 69 (479)
|++ +|||+||||||||++||.+|+++|++ |+|||+++. ...++. +.++.. ......+.+....
T Consensus 4 M~~~~~DvvVIGgG~aGl~aA~~la~~G~~---V~liE~~~~---GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~ 77 (492)
T 3ic9_A 4 MKVINVDVAIIGTGTAGMGAYRAAKKHTDK---VVLIEGGAY---GTTCARVGCMPSKLLIAAADASYHASQTDLFGIQV 77 (492)
T ss_dssp CEEEEEEEEEECCSHHHHHHHHHHHTTCSC---EEEEESSCS---SCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEEC
T ss_pred CccCCCCEEEECCCHHHHHHHHHHHhCCCc---EEEEeCCCC---CCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCC
Confidence 443 48999999999999999999999987 999999752 222211 100000 0000111111100
Q ss_pred CC------cccCCC-----------HhHHHH-cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCccccccc
Q 011700 70 GA------NEERLT-----------PKWYNE-HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEF 131 (479)
Q Consensus 70 ~~------~~~~~~-----------~~~~~~-~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~ 131 (479)
.. ...... ...+.. .+++++.+.. ... +.+++.+.+++++.||+||||||++|..|+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a-~~~--~~~~v~~~~~~~~~~d~lViATGs~p~~p~~~ 154 (492)
T 3ic9_A 78 DRISVNGKAVMKRIQTERDRFVGFVVESVESFDEQDKIRGFA-KFL--DEHTLQVDDHSQVIAKRIVIATGSRPNYPEFL 154 (492)
T ss_dssp SEEEECHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCE-EEE--ETTEEEETTTEEEEEEEEEECCCEECCCCHHH
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEE-EEe--cCCEEEEcCCcEEEeCEEEEccCCCCcCCCCC
Confidence 00 000000 011112 2455666632 222 35678887888999999999999999988763
Q ss_pred CCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHH
Q 011700 132 GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYE 211 (479)
Q Consensus 132 g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~ 211 (479)
+...+++++..+ ... +. ..+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+.+.
T Consensus 155 ---~~~~~~v~t~~~---~~~----~~-~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~ 222 (492)
T 3ic9_A 155 ---AAAGSRLLTNDN---LFE----LN-DLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL-QDEEMKRYAE 222 (492)
T ss_dssp ---HTTGGGEECHHH---HTT----CS-SCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC-CCHHHHHHHH
T ss_pred ---CccCCcEEcHHH---Hhh----hh-hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc-CCHHHHHHHH
Confidence 223344543322 211 11 24799999999999999999999999999999999999875 8999999999
Q ss_pred HHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC--CC--cEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEc-C
Q 011700 212 EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--DG--NRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVT-G 282 (479)
Q Consensus 212 ~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~--~g--~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd-~ 282 (479)
+.+++. |++++++.+++++.++ +.+ .+.+. +| +++++|.|++|+|++|+++++ ..++.. ++|+|.|| +
T Consensus 223 ~~l~~~-V~i~~~~~v~~i~~~~-~~v-~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~ 299 (492)
T 3ic9_A 223 KTFNEE-FYFDAKARVISTIEKE-DAV-EVIYFDKSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDEL 299 (492)
T ss_dssp HHHHTT-SEEETTCEEEEEEECS-SSE-EEEEECTTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTT
T ss_pred HHHhhC-cEEEECCEEEEEEEcC-CEE-EEEEEeCCCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcc
Confidence 999988 9999999999998743 333 35553 67 689999999999999999863 235666 57889999 9
Q ss_pred cccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCC--CCCCCCCeEEEeecCcceEeecCCCc
Q 011700 283 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT--DKFDYLPFFYSRVFTLSWQFYGDNVG 360 (479)
Q Consensus 283 ~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~--~~~~~~p~~~~~~~~~~~~~~G~~~~ 360 (479)
++||+.|+|||+|||+..+ ..+..|..||+.||.||++.... .++..+|+ ..+++.+++++|+++.
T Consensus 300 ~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~--~~~~~p~~a~vGlte~ 367 (492)
T 3ic9_A 300 TLQTSVDHIFVAGDANNTL----------TLLHEAADDGKVAGTNAGAYPVIAQGQRRAPLS--VVFTEPQVASVGLSLR 367 (492)
T ss_dssp TCBCSSTTEEECGGGGTSS----------CSHHHHHHHHHHHHHHHHHTTSCCEECCCCCEE--EECSSSEEEEEESCHH
T ss_pred cccCCCCCEEEEEecCCCC----------ccHHHHHHHHHHHHHHHcCCCCCcccCCCCCcE--EEECCCCeEEecCCHH
Confidence 9999999999999999865 45778999999999999873222 34445553 5566889999999876
Q ss_pred eEEEE-----------c-----c-------CCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHH
Q 011700 361 EVVHY-----------G-----N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAE 414 (479)
Q Consensus 361 ~~~~~-----------~-----~-------~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~ 414 (479)
++... + . .....|.++.+ ++++|||+|++|++++|+ +.++.||+.++|++||.+
T Consensus 368 ~a~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~ 447 (492)
T 3ic9_A 368 QIEDLYADQDAANYVVGQVSFEGQGRSRVMGKNKGLLNVYADRTSGEFLGAEMFGPAAEHIGHLLAWARQQQMTVQAMLT 447 (492)
T ss_dssp HHHHHCSCSSSCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHTT
T ss_pred HHHhccCccCCccEEEEEEEeccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhh
Confidence 54321 1 0 01235666554 689999999999999998 568999999999999999
Q ss_pred HhhcCCCcccccCCC
Q 011700 415 LETQGLGFALAVSQK 429 (479)
Q Consensus 415 ~~~~~~~~a~~~~~~ 429 (479)
++..||+++|.+.++
T Consensus 448 ~~~~hPt~~e~~~~a 462 (492)
T 3ic9_A 448 MPFYHPVIEEGLRTA 462 (492)
T ss_dssp SCCCTTCTHHHHHHH
T ss_pred CCCCCCChHHHHHHH
Confidence 999999999876543
No 49
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=100.00 E-value=1.5e-46 Score=386.30 Aligned_cols=392 Identities=20% Similarity=0.244 Sum_probs=284.9
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC---CCCcc-cccccCC--------CCCCCCC--CcccccC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPY---ERPAL-SKGYLLP--------EAPARLP--SFHTCVG 70 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~---~~~~l-~~~~~~~--------~~~~~~~--~~~~~~~ 70 (479)
|||+||||||||++||.+|++.|++ |+|||+++.... +..+. ++.++.. .....++ .......
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~---V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~~ 78 (455)
T 2yqu_A 2 YDLLVIGAGPGGYVAAIRAAQLGMK---VGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELDLP 78 (455)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECHH
T ss_pred CCEEEECCChhHHHHHHHHHHCCCe---EEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCCcccCCCccCHH
Confidence 7999999999999999999999886 999999853210 00000 1100000 0000000 0000000
Q ss_pred C----------cccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeC-CCcEEEeceEEeecCCCcccccccCCCCCCCC
Q 011700 71 A----------NEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTA-TGETISYKILIIATGARALKLEEFGLSGSDAE 139 (479)
Q Consensus 71 ~----------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~-~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~ 139 (479)
. ........++++.+++++.++.+ .++ .+.+.+. +++++.||+||||||++|..|++ +|.+..
T Consensus 79 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~-~i~--~~~~~v~~~g~~~~~d~lviAtG~~p~~~~~---~g~~~~ 152 (455)
T 2yqu_A 79 ALMAHKDKVVQANTQGVEFLFKKNGIARHQGTAR-FLS--ERKVLVEETGEELEARYILIATGSAPLIPPW---AQVDYE 152 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEE-ESS--SSEEEETTTCCEEEEEEEEECCCEEECCCTT---BCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEE-Eec--CCeEEEeeCCEEEEecEEEECCCCCCCCCCC---CCCCcC
Confidence 0 00001134556779999998644 343 4455543 56789999999999999988876 444433
Q ss_pred CeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCc
Q 011700 140 NVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV 219 (479)
Q Consensus 140 ~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV 219 (479)
++++. .++.. +.. .+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+.+++.||
T Consensus 153 ~v~~~---~~~~~----~~~-~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv 223 (455)
T 2yqu_A 153 RVVTS---TEALS----FPE-VPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPT-MDLEVSRAAERVFKKQGL 223 (455)
T ss_dssp SEECH---HHHTC----CSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHHTC
T ss_pred cEech---HHhhc----ccc-CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccc-cCHHHHHHHHHHHHHCCC
Confidence 44432 22211 111 4789999999999999999999999999999999998885 899999999999999999
Q ss_pred EEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhh--hh-ccccc-ccCcEEEcCcccCCCCCeEEEe
Q 011700 220 KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL--FE-GQLTL-EKGGIKVTGRLQSSNSSVYAVG 295 (479)
Q Consensus 220 ~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l--~~-~~~~~-~~g~i~Vd~~l~t~~~~IyA~G 295 (479)
+++++++|++++.++ +. ..+.+.+|+++++|.|++|+|++|++++ ++ .++.. ++|+|.||+++||+.|+|||+|
T Consensus 224 ~i~~~~~V~~i~~~~-~~-v~v~~~~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~iya~G 301 (455)
T 2yqu_A 224 TIRTGVRVTAVVPEA-KG-ARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTRVPHIYAIG 301 (455)
T ss_dssp EEECSCCEEEEEEET-TE-EEEEETTSCEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCTTSBCSSTTEEECG
T ss_pred EEEECCEEEEEEEeC-CE-EEEEECCCeEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECCCcccCCCCEEEEe
Confidence 999999999998733 33 3567778889999999999999999986 33 34555 4678999999999999999999
Q ss_pred eeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceE------EEEc---
Q 011700 296 DVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV------VHYG--- 366 (479)
Q Consensus 296 D~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~------~~~~--- 366 (479)
||+..+ ..+..|..||+.+|+||++.....++..+|+ ..+++.+++.+|+++.++ +..+
T Consensus 302 D~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~--~~~~~~~~a~~G~~~~~a~~~g~~~~~~~~~ 369 (455)
T 2yqu_A 302 DVVRGP----------MLAHKASEEGIAAVEHMVRGFGHVDYQAIPS--VVYTHPEIAAVGYTEEELKAQGIPYKVGKFP 369 (455)
T ss_dssp GGSSSC----------CCHHHHHHHHHHHHHHHHHSCCCCCGGGCCE--EECSSSEEEEEECCHHHHHHHTCCEEEEEEE
T ss_pred cCCCCc----------cCHHHHHHhHHHHHHHHcCCCccCCCCCCCE--EEEcCCceEEEECCHHHHHHcCCCEEEEEEE
Confidence 999764 4567899999999999997543334445664 567788899999876432 1111
Q ss_pred ---------cCCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCC
Q 011700 367 ---------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQ 428 (479)
Q Consensus 367 ---------~~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~ 428 (479)
......|.++.+ ++++|+|++++|+.+.|+ +.++.+|+++++++|+.++...||++++.+.+
T Consensus 370 ~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~~~~~~~~~Pt~~e~~~~ 443 (455)
T 2yqu_A 370 YSASGRARAMGETEGFIKVLAHAKTDRILGVHGIGARVGDVLAEAALALFFKASAEDLGRAPHAHPSLSEILKE 443 (455)
T ss_dssp GGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCTHHHHHH
T ss_pred cccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHH
Confidence 011245666665 589999999999999887 66899999999999999999888888876644
No 50
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=100.00 E-value=5.6e-46 Score=382.07 Aligned_cols=389 Identities=21% Similarity=0.263 Sum_probs=281.0
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCCcc-cccccC---------CCCC---CCCC----C
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PYERPAL-SKGYLL---------PEAP---ARLP----S 64 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~~l-~~~~~~---------~~~~---~~~~----~ 64 (479)
++|++||||||||++||.+|++.|++ |+|||++... +.+..++ ++.++. .... ..++ .
T Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~---V~lie~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 81 (458)
T 1lvl_A 5 QTTLLIIGGGPGGYVAAIRAGQLGIP---TVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPR 81 (458)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHTCC---EEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCE---EEEEccCCCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCCCc
Confidence 58999999999999999999999886 9999995421 0000111 111100 0000 0110 0
Q ss_pred ccc--ccC------CcccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCC
Q 011700 65 FHT--CVG------ANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGS 136 (479)
Q Consensus 65 ~~~--~~~------~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~ 136 (479)
+.. ... .........++++.+++++.++.+. ++ .+++.+.+ ++++||+||||||++|+.|+. ++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~-~~--~~~v~v~~-~~~~~d~lviATGs~p~~~~~--~~~- 154 (458)
T 1lvl_A 82 LDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKV-LD--GKQVEVDG-QRIQCEHLLLATGSSSVELPM--LPL- 154 (458)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEE-EE--TTEEEETT-EEEECSEEEECCCEEECCBTT--BCC-
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEE-cc--CCEEEEee-EEEEeCEEEEeCCCCCCCCCC--CCc-
Confidence 000 000 0000012245677899999996544 44 56787765 789999999999999987762 132
Q ss_pred CCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHh
Q 011700 137 DAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS 216 (479)
Q Consensus 137 ~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~ 216 (479)
+. .++ +..+...+ .. .+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+.+++
T Consensus 155 ~~-~v~---~~~~~~~~----~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~ 224 (458)
T 1lvl_A 155 GG-PVI---SSTEALAP----KA-LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLKK 224 (458)
T ss_dssp BT-TEE---CHHHHTCC----SS-CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHH
T ss_pred cC-cEe---cHHHHhhh----hc-cCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccc-cCHHHHHHHHHHHHH
Confidence 21 333 33332221 11 4789999999999999999999999999999999999984 899999999999999
Q ss_pred CCcEEEcCCceEEEEEcCCCcEEEEEeCCC--cEEeccEEEEecCCCCChhhh--h-cccccccCcEEEcCcccCCCCCe
Q 011700 217 KGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTSLF--E-GQLTLEKGGIKVTGRLQSSNSSV 291 (479)
Q Consensus 217 ~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~Vi~a~G~~p~~~l~--~-~~~~~~~g~i~Vd~~l~t~~~~I 291 (479)
+||++++++++++++. +. ..+...+| +++++|.|++|+|++|+++++ + .++..++++|.||++|||+.|+|
T Consensus 225 ~gv~i~~~~~v~~i~~---~~-v~v~~~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~~i~vd~~~~t~~~~I 300 (458)
T 1lvl_A 225 LGIALHLGHSVEGYEN---GC-LLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDERCQTSMHNV 300 (458)
T ss_dssp HTCEEETTCEEEEEET---TE-EEEECSSSCCCEECCSCEEECCCEEECCSSSSGGGSCCCEETTEECCCTTCBCSSTTE
T ss_pred CCCEEEECCEEEEEEe---CC-EEEEECCCceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCCEEeECCCCcCCCCCE
Confidence 9999999999999974 22 33444456 689999999999999999853 2 34555322899999999999999
Q ss_pred EEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceE------EEE
Q 011700 292 YAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV------VHY 365 (479)
Q Consensus 292 yA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~------~~~ 365 (479)
||+|||+..+ ..+..|..||+.+|.||++.....++..+|+ ..+++.+++.+|+++.++ +..
T Consensus 301 ya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~~~~p~~a~vG~~e~~a~~~g~~~~~ 368 (458)
T 1lvl_A 301 WAIGDVAGEP----------MLAHRAMAQGEMVAEIIAGKARRFEPAAIAA--VCFTDPEVVVVGKTPEQASQQGLDCIV 368 (458)
T ss_dssp EECGGGGCSS----------CCHHHHHHHHHHHHHHHTTCCCCCCCSCCCE--EECSSSEEEEEECCHHHHHHTTCCEEE
T ss_pred EEeeccCCCc----------ccHHHHHHHHHHHHHHhcCCCccCCCCCCCE--EEECCCCeEEEeCCHHHHHHcCCCEEE
Confidence 9999999864 3577899999999999998543344555664 557788899999876432 111
Q ss_pred c------------cCCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCC
Q 011700 366 G------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQ 428 (479)
Q Consensus 366 ~------------~~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~ 428 (479)
+ ......|.++.+ ++++|+|+|++|+++.|+ +.++.+|+.++|++|+.+++..||++++.+.+
T Consensus 369 ~~~~~~~~~~~~~~~~~~g~~kl~~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~ 446 (458)
T 1lvl_A 369 AQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGEAVQE 446 (458)
T ss_dssp EEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTGGGHHHHHHHHHHHTCBHHHHHTSCCCTTCTTHHHHH
T ss_pred EEEECccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCCHHHHHHH
Confidence 1 011245766665 689999999999998887 66899999999999999998888888876644
No 51
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=100.00 E-value=3.6e-40 Score=322.02 Aligned_cols=294 Identities=22% Similarity=0.246 Sum_probs=210.9
Q ss_pred CCC-cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHh
Q 011700 1 MGR-AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPK 79 (479)
Q Consensus 1 M~~-~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (479)
|++ +|||+||||||||++||.+|+++|++ |+|||++.. . +.++......++|.+....+.+.......
T Consensus 2 Mte~~yDvvIIG~GpAGl~aA~~l~~~g~~---V~liE~~~~--g------G~~~~~~~i~~~p~~~~~~~~~~~~~~~~ 70 (312)
T 4gcm_A 2 MTEIDFDIAIIGAGPAGMTAAVYASRANLK---TVMIERGIP--G------GQMANTEEVENFPGFEMITGPDLSTKMFE 70 (312)
T ss_dssp --CCSEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCT--T------GGGGGCSCBCCSTTCSSBCHHHHHHHHHH
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCC---EEEEecCCC--C------CeeecccccCCcCCccccchHHHHHHHHH
Confidence 665 69999999999999999999999987 999998742 1 11121122223444432222222223344
Q ss_pred HHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhc
Q 011700 80 WYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKS 159 (479)
Q Consensus 80 ~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~ 159 (479)
++.+.+..+..+..+...+.....+...++++++||+||||||++|+.|+++|........+.++... + ...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs~~~~~~ipG~~~~~~~~v~~~~~~-~-------~~~ 142 (312)
T 4gcm_A 71 HAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVC-D-------GAF 142 (312)
T ss_dssp HHHHTTCEEEECCCCEEEECSSCEEEECSSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHH-H-------GGG
T ss_pred HHhhccccccceeeeeeeeeecceeeccCCeEEEeceeEEcccCccCcCCCCChhhhCCccEEeeecc-C-------ccc
Confidence 55667788887777777777777777788899999999999999999988744332222334332211 1 111
Q ss_pred CCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEE
Q 011700 160 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV 239 (479)
Q Consensus 160 ~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~ 239 (479)
.++++++|||+|++|+|+|..|+++|.+||++++.+++++. .. ...+.+++.++.+.....+..+... +....
T Consensus 143 ~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 215 (312)
T 4gcm_A 143 FKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQ---RI---LQDRAFKNDKIDFIWSHTLKSINEK-DGKVG 215 (312)
T ss_dssp GTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSC---HH---HHHHHHHCTTEEEECSEEEEEEEEE-TTEEE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccCcc---hh---HHHHHHHhcCcceeeecceeeeecc-ccccc
Confidence 25899999999999999999999999999999999988764 11 1234567788888888777666552 22211
Q ss_pred E---EEeC--CCcEEeccEEEEecCCCCChhhhhcc-cccccCcEEEcCcccCCCCCeEEEeeeccccccccCceeeccc
Q 011700 240 A---VNLR--DGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEH 313 (479)
Q Consensus 240 ~---v~~~--~g~~i~~D~Vi~a~G~~p~~~l~~~~-~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~ 313 (479)
. .... ++..+++|.|++++|++|++.++... +..++|+|.||++||||+|+|||+|||+..+. .+
T Consensus 216 ~~~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~~~~~g~~~~~G~I~vd~~~~Ts~pgIyA~GDv~~~~~---------~~ 286 (312)
T 4gcm_A 216 SVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGL---------RQ 286 (312)
T ss_dssp EEEEEETTTCCEEEEECSEEEECSCEEESCGGGGGGTCBCTTSCBCCCTTSBCSSTTEEECSTTBSCSC---------CS
T ss_pred cceeeeecCCceeEEeeeeEEeecCCCcCchhHHhcceecCCCeEeeCCCCccCCCCEEEEeecCCCcc---------hH
Confidence 1 1122 23579999999999999999987654 44578899999999999999999999997542 45
Q ss_pred HHHHHHHHHHHHHHHc
Q 011700 314 VDSARKSAKHAVAAIM 329 (479)
Q Consensus 314 ~~~A~~~g~~aa~~i~ 329 (479)
+..|..||+.||.+|.
T Consensus 287 ~~~A~~~G~~AA~~i~ 302 (312)
T 4gcm_A 287 IVTATGDGSIAAQSAA 302 (312)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7789999999999985
No 52
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=100.00 E-value=5.6e-40 Score=339.84 Aligned_cols=296 Identities=19% Similarity=0.249 Sum_probs=228.3
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHH--
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWY-- 81 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 81 (479)
+.+|||||||+||+++|..|++.++ +|+|||+++++.| .|.++.-.. . .+.. ..........+
T Consensus 42 KprVVIIGgG~AGl~~A~~L~~~~~---~VtLId~~~~~~~-~PlL~~va~-G----~l~~------~~i~~p~~~~~~~ 106 (502)
T 4g6h_A 42 KPNVLILGSGWGAISFLKHIDTKKY---NVSIISPRSYFLF-TPLLPSAPV-G----TVDE------KSIIEPIVNFALK 106 (502)
T ss_dssp SCEEEEECSSHHHHHHHHHSCTTTC---EEEEEESSSEEEC-GGGGGGTTT-T----SSCG------GGGEEEHHHHHTT
T ss_pred CCCEEEECCcHHHHHHHHHhhhCCC---cEEEECCCCCccc-ccchhHHhh-c----cccH------HHhhhhHHHHHHh
Confidence 5689999999999999999987655 4999999987655 344321100 0 0000 00001122222
Q ss_pred HHcCcEEEeCceEEEEECCCcEEEeC--------------------CCcEEEeceEEeecCCCcccccccCCCCCCCCCe
Q 011700 82 NEHGIELVLGTRVKSADVRRKTLVTA--------------------TGETISYKILIIATGARALKLEEFGLSGSDAENV 141 (479)
Q Consensus 82 ~~~gv~~~~~~~v~~i~~~~~~v~~~--------------------~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v 141 (479)
++.+++++.+ +|++||+++++|.+. ++.++.||+||||||++|..+++ ||.. ++.
T Consensus 107 ~~~~v~~~~~-~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~~i---pG~~-e~a 181 (502)
T 4g6h_A 107 KKGNVTYYEA-EATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGI---PGVT-DYG 181 (502)
T ss_dssp CSSCEEEEEE-EEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCTTC---TTHH-HHC
T ss_pred hcCCeEEEEE-EEEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccCCc---cCcc-ccc
Confidence 2457999987 899999999988753 35689999999999999988776 6653 567
Q ss_pred EEecCHHHHHHHHHHHhcC---------------CCCCEEEECCChHHHHHHHHHhhC--------------CCeEEEEe
Q 011700 142 CYLRDLADANRLVNVMKSC---------------SGGNAVVIGGGYIGMECAASLVIN--------------KINVTMVF 192 (479)
Q Consensus 142 ~~~~~~~~~~~l~~~l~~~---------------~~~~vvVIGgG~~g~E~A~~l~~~--------------g~~Vtlv~ 192 (479)
+.++++.++.++++.+... ...+++|||+|++|+|+|..|.++ ..+|++++
T Consensus 182 ~~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve 261 (502)
T 4g6h_A 182 HFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVE 261 (502)
T ss_dssp EECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEec
Confidence 8899999998887655321 124799999999999999998754 36899999
Q ss_pred ecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCc----EEeccEEEEecCCCCChh---
Q 011700 193 PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN----RLPTDMVVVGIGIRPNTS--- 265 (479)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~----~i~~D~Vi~a~G~~p~~~--- 265 (479)
+.+++++. +++++++.+++.|+++||++++++.|++++. ++........||+ ++++|.||||+|.+|+..
T Consensus 262 ~~~~il~~-~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~--~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~~~~~ 338 (502)
T 4g6h_A 262 ALPIVLNM-FEKKLSSYAQSHLENTSIKVHLRTAVAKVEE--KQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITD 338 (502)
T ss_dssp SSSSSSTT-SCHHHHHHHHHHHHHTTCEEETTEEEEEECS--SEEEEEEECTTSCEEEEEEECSEEEECCCEECCHHHHH
T ss_pred cccccccC-CCHHHHHHHHHHHHhcceeeecCceEEEEeC--CceEEEEEecCcccceeeeccCEEEEccCCcCCHHHHh
Confidence 99999986 8999999999999999999999999999964 4444555667764 699999999999999953
Q ss_pred hhh-ccccc-ccCcEEEcCcccC-CCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700 266 LFE-GQLTL-EKGGIKVTGRLQS-SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 266 l~~-~~~~~-~~g~i~Vd~~l~t-~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~ 330 (479)
+.. .+... .+|+|.||++||| ++|||||+|||+..+.+ +.++.|.+||+++|+||..
T Consensus 339 l~~~~~~~~~~~g~I~Vd~~lq~~~~~~IfAiGD~a~~~~p--------~~a~~A~qqg~~~A~ni~~ 398 (502)
T 4g6h_A 339 LFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAGLP--------PTAQVAHQEAEYLAKNFDK 398 (502)
T ss_dssp HHHHSGGGTTCCSSEEBCTTSBBTTCSSEEECGGGEESSSC--------CCHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccccCCCceeECCccccCCCCCEEEEEcccCCCCC--------CchHHHHHHHHHHHHHHHH
Confidence 222 23333 5688999999999 89999999999987654 6788999999999999853
No 53
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=100.00 E-value=1.1e-39 Score=318.51 Aligned_cols=299 Identities=21% Similarity=0.221 Sum_probs=207.8
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCC-CCCCCCCCcccc-cCCcccCCCH
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLP-EAPARLPSFHTC-VGANEERLTP 78 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~ 78 (479)
|++.|||+||||||||++||.+|+++|++ |+|||+++... .++. +.+.. ....++|++... .+.+......
T Consensus 1 M~~~yDvvIIG~GpAGl~AA~~la~~g~~---v~liE~~~~gg---~~~~-G~~~~~~~i~~~~g~~~~i~~~~l~~~~~ 73 (314)
T 4a5l_A 1 MSNIHDVVIIGSGPAAHTAAIYLGRSSLK---PVMYEGFMAGG---VAAG-GQLTTTTIIENFPGFPNGIDGNELMMNMR 73 (314)
T ss_dssp -CCCEEEEEECCSHHHHHHHHHHHHTTCC---CEEECCSSGGG---CCTT-CGGGGSSEECCSTTCTTCEEHHHHHHHHH
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCC---EEEEecCCCCC---cccC-CCcCChHHhhhccCCcccCCHHHHHHHHH
Confidence 78889999999999999999999999987 89999975311 1111 11110 111223333211 1111122334
Q ss_pred hHHHHcCcEEEeCceEEEEECC--CcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHH
Q 011700 79 KWYNEHGIELVLGTRVKSADVR--RKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNV 156 (479)
Q Consensus 79 ~~~~~~gv~~~~~~~v~~i~~~--~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~ 156 (479)
+.+.+.++++... .+...... ...+.+.++.++.||+||||||++|+.|++ ||.+............... .
T Consensus 74 ~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~~~~i---pG~~~~~~~~~~~~~~~~~---~ 146 (314)
T 4a5l_A 74 TQSEKYGTTIITE-TIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKRMHV---PGEDKYWQNGVSACAICDG---A 146 (314)
T ss_dssp HHHHHTTCEEECC-CEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEECCCCC---TTHHHHBTTTEESCHHHHT---T
T ss_pred HHHhhcCcEEEEe-EEEEeecCCCceEEEECCCeEEEEeEEEEcccccccccCC---Cccccccccceeeehhhhh---h
Confidence 5566788888876 45555544 345667788899999999999999998887 5543221111222222111 1
Q ss_pred HhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCC
Q 011700 157 MKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG 236 (479)
Q Consensus 157 l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g 236 (479)
.....+++++|||+|++|+|+|..|+++|.+||+++|.+.... .++. ..+.+...+++.+....+.+++.. +.
T Consensus 147 ~~~~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~i~~~-~~ 219 (314)
T 4a5l_A 147 VPIFRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRA---SKTM---QERVLNHPKIEVIWNSELVELEGD-GD 219 (314)
T ss_dssp SGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHHH---HHHHHTCTTEEEECSEEEEEEEES-SS
T ss_pred hhhcCCCeEEEECCChHHHHHHHHHHHhCCeeeeecccccccc---cchh---hhhhhcccceeeEeeeeeEEEEee-ee
Confidence 1112578999999999999999999999999999998876543 3332 334456778999999888888763 33
Q ss_pred cEEEEEe-----CCCcEEeccEEEEecCCCCChhhhhcccccccCcEEEcCcccCCCCCeEEEeeeccccccccCceeec
Q 011700 237 KVVAVNL-----RDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL 311 (479)
Q Consensus 237 ~v~~v~~-----~~g~~i~~D~Vi~a~G~~p~~~l~~~~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~ 311 (479)
....+.+ .+++++++|.|++++|++||+++++..+...++++.||+++|||+|+|||+|||+..+.
T Consensus 220 ~~~~~~~~~~~~~~~~~i~~d~vi~a~G~~pn~~~l~~~~~~~~~G~iv~~~~~Ts~pgIyA~GDv~~~~~--------- 290 (314)
T 4a5l_A 220 LLNGAKIHNLVSGEYKVVPVAGLFYAIGHSPNSKFLGGQVKTADDGYILTEGPKTSVDGVFACGDVCDRVY--------- 290 (314)
T ss_dssp SEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTSSCBCTTSCBCCBTTBCSSTTEEECSTTTCSSC---------
T ss_pred ccceeEEeecccccceeeccccceEecccccChhHhcccceEcCCeeEeCCCCccCCCCEEEEEeccCCcc---------
Confidence 3333333 34568999999999999999999887766655556699999999999999999998754
Q ss_pred ccHHHHHHHHHHHHHHHc
Q 011700 312 EHVDSARKSAKHAVAAIM 329 (479)
Q Consensus 312 ~~~~~A~~~g~~aa~~i~ 329 (479)
.++..|..+|+.||.++.
T Consensus 291 ~~~~~A~~~G~~AA~~~~ 308 (314)
T 4a5l_A 291 RQAIVAAGSGCMAALSCE 308 (314)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 346678899999998874
No 54
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=100.00 E-value=6.9e-38 Score=308.72 Aligned_cols=301 Identities=20% Similarity=0.241 Sum_probs=218.1
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCC-CCCCCCcccccCCcccCCCHh
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEA-PARLPSFHTCVGANEERLTPK 79 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 79 (479)
|++++||+|||||+||+++|..|+++|++ |+|||+++..... +. ...+.. ....+.+...........+.+
T Consensus 2 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~~gg~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 73 (335)
T 2zbw_A 2 AADHTDVLIVGAGPTGLFAGFYVGMRGLS---FRFVDPLPEPGGQ--LT---ALYPEKYIYDVAGFPKVYAKDLVKGLVE 73 (335)
T ss_dssp -CCEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSSCHH--HH---HTCTTSEECCSTTCSSEEHHHHHHHHHH
T ss_pred CCCcCcEEEECCCHHHHHHHHHHHhCCCC---EEEEeCCCCCCCe--ee---ccCCCceeeccCCCCCCCHHHHHHHHHH
Confidence 34568999999999999999999998886 9999998642110 00 000000 011111111001111122334
Q ss_pred HHHHcCcEEEeCceEEEEECCC--cEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCC---CCeEE-ecCHHHHHHH
Q 011700 80 WYNEHGIELVLGTRVKSADVRR--KTLVTATGETISYKILIIATGARALKLEEFGLSGSDA---ENVCY-LRDLADANRL 153 (479)
Q Consensus 80 ~~~~~gv~~~~~~~v~~i~~~~--~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~---~~v~~-~~~~~~~~~l 153 (479)
.+++++++++.+++|..++.+. ..+.+.+++++.||+||+|||+.+..|..++++|.+. ..+++ +++..
T Consensus 74 ~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~~~~i~g~~~~~~~~~~~~~~~~~----- 148 (335)
T 2zbw_A 74 QVAPFNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYAVKSKA----- 148 (335)
T ss_dssp HHGGGCCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEECCCCCTTTTTTBTTTEESSCSCGG-----
T ss_pred HHHHcCCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCCCCCCCChhhccCcEEEEecCchh-----
Confidence 4556789999898999988764 3466667778999999999999533333222355321 22322 22221
Q ss_pred HHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEc
Q 011700 154 VNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVD 233 (479)
Q Consensus 154 ~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~ 233 (479)
...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++ .++..+.+.+.+++.||++++++.+.+++.
T Consensus 149 -----~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~---~~~~~~~l~~~l~~~gv~v~~~~~v~~i~~- 219 (335)
T 2zbw_A 149 -----EFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA---HEASVKELMKAHEEGRLEVLTPYELRRVEG- 219 (335)
T ss_dssp -----GGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS---CHHHHHHHHHHHHTTSSEEETTEEEEEEEE-
T ss_pred -----hcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc---cHHHHHHHHhccccCCeEEecCCcceeEcc-
Confidence 12479999999999999999999999999999999988754 467788888999999999999999999987
Q ss_pred CCCcEEEEEeC---CC--cEEeccEEEEecCCCCChhhhhc-ccccccCcEEEcCcccCCCCCeEEEeeeccccccccCc
Q 011700 234 SNGKVVAVNLR---DG--NRLPTDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGE 307 (479)
Q Consensus 234 ~~g~v~~v~~~---~g--~~i~~D~Vi~a~G~~p~~~l~~~-~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~ 307 (479)
++.+..+.+. +| +++++|.|++++|++|++++++. ++..++|+|.||+++||+.|+|||+|||+..+..
T Consensus 220 -~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~---- 294 (335)
T 2zbw_A 220 -DERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWGLALEKNKIKVDTTMATSIPGVYACGDIVTYPGK---- 294 (335)
T ss_dssp -SSSEEEEEEEETTTCCEEEEECSEEEECCCEEEECGGGGGSCCCEETTEEECCTTCBCSSTTEEECSTTEECTTC----
T ss_pred -CCCeeEEEEEECCCCceEEEecCEEEEeecCCCCchHhhhcceeccCCeeeeCCCCCCCCCCEEEeccccccCcc----
Confidence 3444456665 66 57999999999999999887654 4555678999999999999999999999986431
Q ss_pred eeecccHHHHHHHHHHHHHHHcCC
Q 011700 308 TRRLEHVDSARKSAKHAVAAIMEP 331 (479)
Q Consensus 308 ~~~~~~~~~A~~~g~~aa~~i~~~ 331 (479)
...+..|..||+.+|.||.+.
T Consensus 295 ---~~~~~~A~~~g~~aa~~i~~~ 315 (335)
T 2zbw_A 295 ---LPLIVLGFGEAAIAANHAAAY 315 (335)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHH
T ss_pred ---hhhhhhhHHHHHHHHHHHHHH
Confidence 156888999999999999754
No 55
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=100.00 E-value=6.2e-38 Score=306.99 Aligned_cols=297 Identities=21% Similarity=0.221 Sum_probs=219.1
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCccccc-CCcccCCCHh
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCV-GANEERLTPK 79 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 79 (479)
||+++||+|||||+||+++|.+|++.|++ |+|+|+.... . .+........+|.+.... ..........
T Consensus 2 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~g--g------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (320)
T 1trb_A 2 TTKHSKLLILGSGPAGYTAAVYAARANLQ---PVLITGMEKG--G------QLTTTTEVENWPGDPNDLTGPLLMERMHE 70 (320)
T ss_dssp CEEEEEEEEECCSHHHHHHHHHHHTTTCC---CEEECCSSTT--G------GGGGCSBCCCSTTCCSSCBHHHHHHHHHH
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCc---EEEEccCCCC--c------eEecchhhhhCCCCCCCCCHHHHHHHHHH
Confidence 45678999999999999999999999887 8999975211 0 011111111222221100 1111122345
Q ss_pred HHHHcCcEEEeCceEEEEECCCcEEE-eCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHh
Q 011700 80 WYNEHGIELVLGTRVKSADVRRKTLV-TATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMK 158 (479)
Q Consensus 80 ~~~~~gv~~~~~~~v~~i~~~~~~v~-~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~ 158 (479)
++.+.+++++.++ +..++.+.+.+. +.++.++.||+||+|||+.|..|++++........++++....+ .+
T Consensus 71 ~~~~~~~~~~~~~-v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~------~~- 142 (320)
T 1trb_A 71 HATKFETEIIFDH-INKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATSDG------FF- 142 (320)
T ss_dssp HHHHTTCEEECCC-EEEEECSSSSEEEEESSCEEEEEEEEECCCEEECCCCCHHHHHTBTTTEESCHHHHG------GG-
T ss_pred HHHHCCCEEEEee-eeEEEecCCEEEEEeCCCEEEcCEEEECCCCCcCCCCCCChHHhCCceeEecccCCc------cc-
Confidence 5667899999985 889987665443 56778899999999999998877663321111123333222211 11
Q ss_pred cCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcE
Q 011700 159 SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV 238 (479)
Q Consensus 159 ~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v 238 (479)
..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+. .++.+.+.+.+.+++.||++++++++.+++. +++.+
T Consensus 143 -~~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~-~~~~v 217 (320)
T 1trb_A 143 -YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTG-DQMGV 217 (320)
T ss_dssp -GTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC---CCHHHHHHHHHHHHTSSEEEECSCEEEEEEE-CSSSE
T ss_pred -cCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccc---cCHHHHHHHHHhcccCCeEEEcCceeEEEEc-CCCce
Confidence 257999999999999999999999999999999988764 3788888888999999999999999999987 34456
Q ss_pred EEEEeCC----C--cEEeccEEEEecCCCCChhhhhcccccccCcEEEcCcc-----cCCCCCeEEEeeeccccccccCc
Q 011700 239 VAVNLRD----G--NRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRL-----QSSNSSVYAVGDVAAFPLKLLGE 307 (479)
Q Consensus 239 ~~v~~~~----g--~~i~~D~Vi~a~G~~p~~~l~~~~~~~~~g~i~Vd~~l-----~t~~~~IyA~GD~~~~~~~~~g~ 307 (479)
..+.+.+ | +++++|.|++|+|++|++++++.++..++|+|.||+++ +|+.|+|||+|||+..+.
T Consensus 218 ~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~~~~~l~~~~G~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~----- 292 (320)
T 1trb_A 218 TGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIY----- 292 (320)
T ss_dssp EEEEEECCTTCCCCEEEECSEEEECSCEEESCGGGTTTSCEETTEECCCCSSSSCTTBCSSTTEEECGGGGCSSS-----
T ss_pred EEEEEEeccCCCceEEEEcCEEEEEeCCCCChHHhcccccccCceEEECCCcccccccCCCCCEEEcccccCCcc-----
Confidence 5566654 4 57999999999999999998875565567889999997 899999999999998642
Q ss_pred eeecccHHHHHHHHHHHHHHHcC
Q 011700 308 TRRLEHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 308 ~~~~~~~~~A~~~g~~aa~~i~~ 330 (479)
..+..|..+|+.||.+|..
T Consensus 293 ----~~~~~A~~~g~~aa~~i~~ 311 (320)
T 1trb_A 293 ----RQAITSAGTGCMAALDAER 311 (320)
T ss_dssp ----CCHHHHHHHHHHHHHHHHH
T ss_pred ----hhhhhhhccHHHHHHHHHH
Confidence 4577899999999999864
No 56
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=100.00 E-value=9.3e-38 Score=311.12 Aligned_cols=302 Identities=23% Similarity=0.305 Sum_probs=218.9
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCC-CCCCCCCcccccCCcccCCCHh
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPE-APARLPSFHTCVGANEERLTPK 79 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 79 (479)
||+++||+|||||+||+++|..|++.|++ |+|||+.+..... +. ...+. .....+.+...........+.+
T Consensus 11 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~~gg~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (360)
T 3ab1_A 11 HHDMRDLTIIGGGPTGIFAAFQCGMNNIS---CRIIESMPQLGGQ--LA---ALYPEKHIYDVAGFPEVPAIDLVESLWA 82 (360)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCHH--HH---HTCTTSEECCSTTCSSEEHHHHHHHHHH
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCCCCCc--cc---ccCCCcccccCCCCCCCCHHHHHHHHHH
Confidence 55678999999999999999999998887 9999998642110 00 00000 0011121111001111122334
Q ss_pred HHHHcCcEEEeCceEEEEECCCc---EEEeCCCcEEEeceEEeecCCC---cccccccC-CCCCCCCCeEE-ecCHHHHH
Q 011700 80 WYNEHGIELVLGTRVKSADVRRK---TLVTATGETISYKILIIATGAR---ALKLEEFG-LSGSDAENVCY-LRDLADAN 151 (479)
Q Consensus 80 ~~~~~gv~~~~~~~v~~i~~~~~---~v~~~~g~~~~~d~lviAtG~~---~~~~~~~g-~~g~~~~~v~~-~~~~~~~~ 151 (479)
.+++.+++++.+++|..++.+.+ .+.+.+++++.||+||+|||+. |..|+++| ........+++ +++..
T Consensus 83 ~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~~v~~~~~~~~--- 159 (360)
T 3ab1_A 83 QAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYAVKSVE--- 159 (360)
T ss_dssp HHHTTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTTTEESSCSCGG---
T ss_pred HHHHhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCCCCCCCCchhhCcCceEEEecCCHH---
Confidence 45667899999989999987643 6777788889999999999994 55555533 22122223432 22221
Q ss_pred HHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEE
Q 011700 152 RLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFD 231 (479)
Q Consensus 152 ~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~ 231 (479)
...+++++|||+|++|+|+|..|.+.+.+|+++++.+.+++. +++.+.+.+.+++.||++++++++.+++
T Consensus 160 -------~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~---~~~~~~l~~~~~~~gv~i~~~~~v~~i~ 229 (360)
T 3ab1_A 160 -------DFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGH---GKTAHEVERARANGTIDVYLETEVASIE 229 (360)
T ss_dssp -------GGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSC---SHHHHSSHHHHHHTSEEEESSEEEEEEE
T ss_pred -------HcCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCC---HHHHHHHHHHhhcCceEEEcCcCHHHhc
Confidence 125799999999999999999999999999999999877652 4566777888889999999999999998
Q ss_pred EcCCCcEEEEEeC--CC--cEEeccEEEEecCCCCChhhhhc-ccccccCcEEEcCcccCCCCCeEEEeeeccccccccC
Q 011700 232 VDSNGKVVAVNLR--DG--NRLPTDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLG 306 (479)
Q Consensus 232 ~~~~g~v~~v~~~--~g--~~i~~D~Vi~a~G~~p~~~l~~~-~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g 306 (479)
. +++++..+.+. +| +++++|.|++++|++|++++++. ++..++|+|.||+++||++|+|||+|||+..+..
T Consensus 230 ~-~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~--- 305 (360)
T 3ab1_A 230 E-SNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELYENALVVDSHMKTSVDGLYAAGDIAYYPGK--- 305 (360)
T ss_dssp E-ETTEEEEEEEEETTCCEEEEECSEEEECCCBCCSCGGGGGSSCCEETTEEECCTTSBCSSTTEEECSTTEECTTC---
T ss_pred c-CCCceEEEEEEecCCCeEEEeCCEEEECCCCCCCHHHHHhhccccccCeeeecCCCcCCCCCEEEecCccCCCCc---
Confidence 7 35655556664 77 57999999999999999987754 4555678999999999999999999999986431
Q ss_pred ceeecccHHHHHHHHHHHHHHHcCC
Q 011700 307 ETRRLEHVDSARKSAKHAVAAIMEP 331 (479)
Q Consensus 307 ~~~~~~~~~~A~~~g~~aa~~i~~~ 331 (479)
..++..|..||+.||.+|.+.
T Consensus 306 ----~~~~~~A~~~g~~aa~~i~~~ 326 (360)
T 3ab1_A 306 ----LKIIQTGLSEATMAVRHSLSY 326 (360)
T ss_dssp ----CCSHHHHHHHHHHHHHHHHHH
T ss_pred ----cceeehhHHHHHHHHHHHHhh
Confidence 156888999999999999754
No 57
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=100.00 E-value=1.5e-37 Score=302.87 Aligned_cols=290 Identities=22% Similarity=0.282 Sum_probs=211.1
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
++||+||||||||+++|.+|++.|++ |+|||+.....+ ........++.............+.+++++
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~---v~li~~~~gG~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (310)
T 1fl2_A 1 AYDVLIVGSGPAGAAAAIYSARKGIR---TGLMGERFGGQI---------LDTVDIENYISVPKTEGQKLAGALKVHVDE 68 (310)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTTTCC---EEEECSSTTGGG---------GGCCEECCBTTBSSEEHHHHHHHHHHHHHT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCc---EEEEeCCCCcee---------ccccccccccCcCCCCHHHHHHHHHHHHHH
Confidence 37999999999999999999998887 899976421110 000000011111000001111233455667
Q ss_pred cCcEEEeCceEEEEECC-----CcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHh
Q 011700 84 HGIELVLGTRVKSADVR-----RKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMK 158 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~-----~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~ 158 (479)
.+++++.+++|..++.+ ...+.+.+++++.||+||+|||+.|..|+++|........++++.. +...
T Consensus 69 ~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~------~~~~-- 140 (310)
T 1fl2_A 69 YDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPH------CDGP-- 140 (310)
T ss_dssp SCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHH------HHGG--
T ss_pred cCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChhhcccceeEEecc------CcHh--
Confidence 89999999899999865 3567777888899999999999998877764332222233443221 1111
Q ss_pred cCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCc
Q 011700 159 SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGK 237 (479)
Q Consensus 159 ~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~ 237 (479)
...+++++|||+|++|+|+|..|++.+.+|+++++.+.+. +++. +.+.+++ .||++++++++++++. ++++
T Consensus 141 ~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~----~~~~l~~~~gv~v~~~~~v~~i~~-~~~~ 212 (310)
T 1fl2_A 141 LFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK---ADQV----LQDKLRSLKNVDIILNAQTTEVKG-DGSK 212 (310)
T ss_dssp GGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC---SCHH----HHHHHHTCTTEEEESSEEEEEEEE-SSSS
T ss_pred hcCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC---ccHH----HHHHHhhCCCeEEecCCceEEEEc-CCCc
Confidence 1257999999999999999999999999999999998762 3543 4455666 6999999999999987 4456
Q ss_pred EEEEEeCC---Cc--EEeccEEEEecCCCCChhhhhccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeec
Q 011700 238 VVAVNLRD---GN--RLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL 311 (479)
Q Consensus 238 v~~v~~~~---g~--~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~ 311 (479)
+..+.+.+ |+ ++++|.|++++|++|++++++..+.. ++|+|.||+++||+.|+|||+|||+..+.
T Consensus 213 v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~l~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~--------- 283 (310)
T 1fl2_A 213 VVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPY--------- 283 (310)
T ss_dssp EEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTBSCSS---------
T ss_pred EEEEEEEECCCCcEEEEEcCEEEEeeCCccCchHHhccccccCCCcEEcCCCCccCCCCEEEeecccCCcc---------
Confidence 65566643 53 68999999999999999887655555 56899999999999999999999998653
Q ss_pred ccHHHHHHHHHHHHHHHcC
Q 011700 312 EHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 312 ~~~~~A~~~g~~aa~~i~~ 330 (479)
..+..|..||+.||.+|..
T Consensus 284 ~~~~~A~~~g~~aa~~i~~ 302 (310)
T 1fl2_A 284 KQIIIATGEGAKASLSAFD 302 (310)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHhhHHHHHHHHHH
Confidence 3577899999999999864
No 58
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=100.00 E-value=3.2e-37 Score=302.85 Aligned_cols=291 Identities=21% Similarity=0.258 Sum_probs=210.3
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccc-cCCcccCCCHhHH
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTC-VGANEERLTPKWY 81 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 81 (479)
+++||+||||||||+++|..|+++|++ |+|||++.. ... +.........|.+... ........+.+.+
T Consensus 7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~--gg~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 75 (325)
T 2q7v_A 7 HDYDVVIIGGGPAGLTAAIYTGRAQLS---TLILEKGMP--GGQ------IAWSEEVENFPGFPEPIAGMELAQRMHQQA 75 (325)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCT--TGG------GGGCSCBCCSTTCSSCBCHHHHHHHHHHHH
T ss_pred ccCCEEEECCCHHHHHHHHHHHHcCCc---EEEEeCCCC--Ccc------cccccccccCCCCCCCCCHHHHHHHHHHHH
Confidence 458999999999999999999999886 999999832 110 1000011112222110 0011112334556
Q ss_pred HHcCcEEEeCceEEEEECC--C---cEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHH
Q 011700 82 NEHGIELVLGTRVKSADVR--R---KTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNV 156 (479)
Q Consensus 82 ~~~gv~~~~~~~v~~i~~~--~---~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~ 156 (479)
++.+++++.+ +|..++.+ + ..+.+.+++++.||+||+|||+.|..|++++........++++.....
T Consensus 76 ~~~gv~~~~~-~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~i~g~~~~~~~~~~~~~~~~~------- 147 (325)
T 2q7v_A 76 EKFGAKVEMD-EVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRKLGIPGEDNFWGKGVSTCATCDG------- 147 (325)
T ss_dssp HHTTCEEEEC-CEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHG-------
T ss_pred HHcCCEEEee-eEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChhhccCceEEEeccCCH-------
Confidence 6789999885 89988875 3 467777888999999999999998887763322111133433222111
Q ss_pred HhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCC
Q 011700 157 MKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG 236 (479)
Q Consensus 157 l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g 236 (479)
. ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+. .++.+.+ +.+++.||++++++++++++. ++
T Consensus 148 ~-~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~~~~---~l~~~~gv~i~~~~~v~~i~~--~~ 218 (325)
T 2q7v_A 148 F-FYKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLR---ANKVAQA---RAFANPKMKFIWDTAVEEIQG--AD 218 (325)
T ss_dssp G-GGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC---SCHHHHH---HHHTCTTEEEECSEEEEEEEE--SS
T ss_pred H-HcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCC---cchHHHH---HHHhcCCceEecCCceEEEcc--CC
Confidence 1 1257899999999999999999999999999999988764 2444332 223457999999999999986 34
Q ss_pred cEEEEEeC---CCc--EEeccEEEEecCCCCChhhhhccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceee
Q 011700 237 KVVAVNLR---DGN--RLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRR 310 (479)
Q Consensus 237 ~v~~v~~~---~g~--~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~ 310 (479)
++..+.+. +|+ ++++|.|++|+|++|++++++..+.. ++|+|.||+++||++|+|||+|||+..+.
T Consensus 219 ~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~-------- 290 (325)
T 2q7v_A 219 SVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDTVSLRDDGYVDVRDEIYTNIPMLFAAGDVSDYIY-------- 290 (325)
T ss_dssp SEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCBTTTBCSSTTEEECSTTTCSSC--------
T ss_pred cEEEEEEEECCCCcEEEEEcCEEEEccCCCCChHHHhhhcccCCCccEecCCCCccCCCCEEEeecccCccH--------
Confidence 55556664 665 79999999999999999887655544 57899999999999999999999998632
Q ss_pred cccHHHHHHHHHHHHHHHcC
Q 011700 311 LEHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 311 ~~~~~~A~~~g~~aa~~i~~ 330 (479)
..+..|..||+.||.||..
T Consensus 291 -~~~~~A~~~g~~aa~~i~~ 309 (325)
T 2q7v_A 291 -RQLATSVGAGTRAAMMTER 309 (325)
T ss_dssp -CCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999975
No 59
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=100.00 E-value=3.3e-37 Score=301.87 Aligned_cols=292 Identities=24% Similarity=0.290 Sum_probs=209.9
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhH
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKW 80 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (479)
|+.++||+|||||+||+++|..|+++|++ |+|||+.... .. +........+|.+....+......+.+.
T Consensus 13 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~g--g~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (319)
T 3cty_A 13 KERDFDVVIVGAGAAGFSAAVYAARSGFS---VAILDKAVAG--GL------TAEAPLVENYLGFKSIVGSELAKLFADH 81 (319)
T ss_dssp -CCEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSTT--GG------GGGCSCBCCBTTBSSBCHHHHHHHHHHH
T ss_pred ccCCCcEEEECcCHHHHHHHHHHHhCCCc---EEEEeCCCCC--cc------ccccchhhhcCCCcccCHHHHHHHHHHH
Confidence 45568999999999999999999999886 9999995321 10 1000011112222100011111223445
Q ss_pred HHHcCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHh
Q 011700 81 YNEHGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMK 158 (479)
Q Consensus 81 ~~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~ 158 (479)
+++.+++++. .++..++.+++ .+.+ ++.++.||+||+|||+.|..|++++........+++....... .
T Consensus 82 ~~~~~v~~~~-~~v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~------~- 152 (319)
T 3cty_A 82 AANYAKIREG-VEVRSIKKTQGGFDIET-NDDTYHAKYVIITTGTTHKHLGVKGESEYFGKGTSYCSTCDGY------L- 152 (319)
T ss_dssp HHTTSEEEET-CCEEEEEEETTEEEEEE-SSSEEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHHHGG------G-
T ss_pred HHHcCCEEEE-eeEEEEEEeCCEEEEEE-CCCEEEeCEEEECCCCCcccCCCCChHHhCCceEEEEEecchh------h-
Confidence 5677999988 58998887655 4555 5668999999999999988877633221111334333222111 1
Q ss_pred cCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcE
Q 011700 159 SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV 238 (479)
Q Consensus 159 ~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v 238 (479)
..+++++|||+|++|+|+|..|.+.+.+|+++++.+.+.. ++. +.+.+++.||++++++++++++. +++++
T Consensus 153 -~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~---~~~----l~~~l~~~gv~i~~~~~v~~i~~-~~~~v 223 (319)
T 3cty_A 153 -FKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMC---ENA----YVQEIKKRNIPYIMNAQVTEIVG-DGKKV 223 (319)
T ss_dssp -GBTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCS---CHH----HHHHHHHTTCCEECSEEEEEEEE-SSSSE
T ss_pred -cCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCC---CHH----HHHHHhcCCcEEEcCCeEEEEec-CCceE
Confidence 2478999999999999999999999999999999877632 444 34456688999999999999987 34545
Q ss_pred EEEEeC---CCc--EEeccEEEEecCCCCChhhhhc-cccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeec
Q 011700 239 VAVNLR---DGN--RLPTDMVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL 311 (479)
Q Consensus 239 ~~v~~~---~g~--~i~~D~Vi~a~G~~p~~~l~~~-~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~ 311 (479)
..+.+. +|+ ++++|.|++|+|++|++++++. ++.. ++|+|.||+++||+.|+|||+|||+..+.
T Consensus 224 ~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~--------- 294 (319)
T 3cty_A 224 TGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVKLDERGYIVVDSRQRTSVPGVYAAGDVTSGNF--------- 294 (319)
T ss_dssp EEEEEEETTTCCEEEECCSEEEECCCEEECCGGGTTSCCCBCTTSCBCCCTTCBCSSTTEEECSTTBTTCC---------
T ss_pred EEEEEEEcCCCceEEEecCEEEEeeCCccChHHHhhccccccCCccEeCCCCCccCCCCEEEeecccCcch---------
Confidence 556664 565 6999999999999999988764 4555 56899999999999999999999998642
Q ss_pred ccHHHHHHHHHHHHHHHcC
Q 011700 312 EHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 312 ~~~~~A~~~g~~aa~~i~~ 330 (479)
..+..|..||+.||.+|..
T Consensus 295 ~~~~~A~~~g~~aa~~i~~ 313 (319)
T 3cty_A 295 AQIASAVGDGCKAALSLYS 313 (319)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4577899999999999864
No 60
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=100.00 E-value=3.6e-37 Score=300.43 Aligned_cols=286 Identities=19% Similarity=0.248 Sum_probs=209.3
Q ss_pred CeEEEECCchHHHHHHHHHHHcCC-CCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCccccc-CCcccCCCHhHHH
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGV-PPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCV-GANEERLTPKWYN 82 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~-~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (479)
+||+|||||+||+++|..|++.|+ + |+|||++.... . +........+|.+.... .......+.+.++
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~~---v~lie~~~~gg---~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 70 (311)
T 2q0l_A 2 IDCAIIGGGPAGLSAGLYATRGGVKN---AVLFEKGMPGG---Q-----ITGSSEIENYPGVKEVVSGLDFMQPWQEQCF 70 (311)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCSS---EEEECSSSTTC---G-----GGGCSCBCCSTTCCSCBCHHHHHHHHHHHHH
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCc---EEEEcCCCCCc---c-----cccccccccCCCCcccCCHHHHHHHHHHHHH
Confidence 799999999999999999999988 6 99999963211 0 00000011122211100 0111122344556
Q ss_pred HcCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCcccccccCCCCCC---CCCeEEecCHHHHHHHHHHH
Q 011700 83 EHGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALKLEEFGLSGSD---AENVCYLRDLADANRLVNVM 157 (479)
Q Consensus 83 ~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~---~~~v~~~~~~~~~~~l~~~l 157 (479)
+.+++++. ++|..++.+.+ .+.+.++++++||+||+|||+.|..|++ +|.+ ...++++...... .
T Consensus 71 ~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~~---~g~~~~~~~~~~~~~~~~~~------~ 140 (311)
T 2q0l_A 71 RFGLKHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGI---KGESEYWGKGVSTCATCDGF------F 140 (311)
T ss_dssp TTSCEEEC-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEECCCCC---BTHHHHBTTTEESCHHHHGG------G
T ss_pred HcCCEEEE-EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCCCCCC---CChhhccCCcEEEeecCChh------h
Confidence 77999988 58998887666 5667788899999999999999888776 4432 1334433322111 1
Q ss_pred hcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHH-hCCcEEEcCCceEEEEEcCCC
Q 011700 158 KSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYK-SKGVKFVKGTVLSSFDVDSNG 236 (479)
Q Consensus 158 ~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~-~~GV~i~~~~~v~~i~~~~~g 236 (479)
..+++++|||+|++|+|+|..|.+.|.+|+++++.+++. .++++. +.+. +.||++++++.+++++.+ ++
T Consensus 141 --~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~~~----~~l~~~~gv~v~~~~~v~~i~~~-~~ 210 (311)
T 2q0l_A 141 --YKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR---CAPITL----EHAKNNDKIEFLTPYVVEEIKGD-AS 210 (311)
T ss_dssp --GTTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC---SCHHHH----HHHHTCTTEEEETTEEEEEEEEE-TT
T ss_pred --cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC---CCHHHH----HHHhhCCCeEEEeCCEEEEEECC-CC
Confidence 257999999999999999999999999999999988763 355433 3343 579999999999999873 34
Q ss_pred cEEEEEeC---CCc--EEeccEEEEecCCCCChhhhhcc-----ccc-ccCcEEEcCcccCCCCCeEEEeeecccccccc
Q 011700 237 KVVAVNLR---DGN--RLPTDMVVVGIGIRPNTSLFEGQ-----LTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLL 305 (479)
Q Consensus 237 ~v~~v~~~---~g~--~i~~D~Vi~a~G~~p~~~l~~~~-----~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~ 305 (479)
.+..+.+. +|+ ++++|.|++++|++|++++++.. +.. ++|+|.||+++||++|+|||+|||+..+.
T Consensus 211 ~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~--- 287 (311)
T 2q0l_A 211 GVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSMKTNVQGLFAAGDIRIFAP--- 287 (311)
T ss_dssp EEEEEEEEETTTCCEEEEECSEEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBCSSTTEEECSTTBTTCC---
T ss_pred cEeEEEEEecCCCceEEEecCEEEEEecCccChhhhhcccccceeEeccCCCEEeCCccccCCCCeEEcccccCcch---
Confidence 44456665 665 79999999999999999887653 555 57899999999999999999999998632
Q ss_pred CceeecccHHHHHHHHHHHHHHHcC
Q 011700 306 GETRRLEHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 306 g~~~~~~~~~~A~~~g~~aa~~i~~ 330 (479)
..+..|..||+.||.||..
T Consensus 288 ------~~~~~A~~~g~~aa~~i~~ 306 (311)
T 2q0l_A 288 ------KQVVCAASDGATAALSVIS 306 (311)
T ss_dssp ------CCHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHhHHHHHHHHHH
Confidence 4678899999999999864
No 61
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=100.00 E-value=1.1e-37 Score=303.25 Aligned_cols=284 Identities=10% Similarity=0.045 Sum_probs=194.8
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCccccc---CCcccCCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCV---GANEERLT 77 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 77 (479)
+|++|||+||||||||++||.+|+|+|++ |+|||++... +.+. ...|.+.... ........
T Consensus 3 ~M~~yDVvIIGaGpAGlsAA~~lar~g~~---v~lie~~~~g---------g~~~----~~~~~~~~~~~~~~~~~~~~~ 66 (304)
T 4fk1_A 3 AMKYIDCAVIGAGPAGLNASLVLGRARKQ---IALFDNNTNR---------NRVT----QNSHGFITRDGIKPEEFKEIG 66 (304)
T ss_dssp ---CEEEEEECCSHHHHHHHHHHHHTTCC---EEEEECSCCG---------GGGS----SCBCCSTTCTTBCHHHHHHHH
T ss_pred CCCCcCEEEECCCHHHHHHHHHHHHCCCC---EEEEeCCCCC---------Ceee----eecCCccCCCCCCHHHHHHHH
Confidence 36789999999999999999999999987 9999987421 1110 0111111000 00000111
Q ss_pred HhHHHHc-CcEEEeCceEEEEEC-C--CcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHH
Q 011700 78 PKWYNEH-GIELVLGTRVKSADV-R--RKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRL 153 (479)
Q Consensus 78 ~~~~~~~-gv~~~~~~~v~~i~~-~--~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l 153 (479)
.+.+.++ ++.+... .+..++. + .+++.+.++++++||+||||||++|+.|+++|........++++.....
T Consensus 67 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~~p~i~G~~~~~~~~v~~~~~~~~---- 141 (304)
T 4fk1_A 67 LNEVMKYPSVHYYEK-TVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEEFPSIPNVREYYGKSLFSCPYCDG---- 141 (304)
T ss_dssp HHHHTTSTTEEEEEC-CEEEEEECTTSCEEEEETTCCEEEEEEEEECCCCEEECCSCTTHHHHBTTTEESCHHHHS----
T ss_pred HHHHHhcCCEEEEee-EEEEeeecCCCcEEEEECCCCEEEeCEEEEccCCccccccccCccccccceeeeccccch----
Confidence 1222233 4566655 4444432 2 3577888899999999999999999988873322111233433222111
Q ss_pred HHHHhcCCCCCEEEECCCh-HHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEE
Q 011700 154 VNVMKSCSGGNAVVIGGGY-IGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 232 (479)
Q Consensus 154 ~~~l~~~~~~~vvVIGgG~-~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~ 232 (479)
. ...+++++|||+|. .++|+|..+.+.+.+|+++.+.+.+ .+ .+.+.++++|++++.+. +..+..
T Consensus 142 ---~-~~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~~-----~~----~~~~~l~~~g~~~~~~~-v~~~~~ 207 (304)
T 4fk1_A 142 ---W-ELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNEL-----SQ----TIMDELSNKNIPVITES-IRTLQG 207 (304)
T ss_dssp ---G-GGTTSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCCC-----CH----HHHHHHHTTTCCEECSC-EEEEES
T ss_pred ---h-HhcCCceeeecCCCchhhhHHHHHHhCCceEEEEeccccc-----hh----hhhhhhhccceeEeeee-EEEeec
Confidence 1 12467888888885 5689999999999999999877553 22 34566788999999775 677765
Q ss_pred cCCCcEEEEEeCCCcEEeccEEEEecCCCCChhh-hhccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceee
Q 011700 233 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL-FEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRR 310 (479)
Q Consensus 233 ~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l-~~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~ 310 (479)
+++++..+.+.+|+++++|.+++++|.+|++.+ .+.++.+ ++|+|.||+++|||+|+|||+|||+..+.
T Consensus 208 -~~~~~~~v~~~~g~~i~~~~~vi~~g~~~~~~~~~~~g~~~~~~G~I~vd~~~~Ts~p~IyA~GDv~~~~~-------- 278 (304)
T 4fk1_A 208 -EGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVIDDFGRTSEKNIYLAGETTTQGP-------- 278 (304)
T ss_dssp -GGGCCCEEEETTSCEECCCEEEECCEEECSSCHHHHTTCCCCTTSSSCSSTTCBCSSTTEEECSHHHHTSC--------
T ss_pred -CCCeeeeeeccccceeeecceeeeeccccCChhhhhcCeEECCCCCEEECcCCccCCCCEEEEeccCCCcc--------
Confidence 456677899999999999988888776665554 4556777 67889999999999999999999997543
Q ss_pred cccHHHHHHHHHHHHHHHc
Q 011700 311 LEHVDSARKSAKHAVAAIM 329 (479)
Q Consensus 311 ~~~~~~A~~~g~~aa~~i~ 329 (479)
.++..|..+|+.||.+|.
T Consensus 279 -~~~~~A~~~G~~AA~~i~ 296 (304)
T 4fk1_A 279 -SSLIIAASQGNKAAIAIN 296 (304)
T ss_dssp -CCHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHH
Confidence 356788999999998774
No 62
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=100.00 E-value=9.6e-37 Score=298.41 Aligned_cols=291 Identities=22% Similarity=0.227 Sum_probs=212.5
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
++||+|||||+||+++|.+|+++|++ |+|||++ .. . .+........+|.+...........+.+++++
T Consensus 15 ~~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~-~g--g------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (323)
T 3f8d_A 15 KFDVIIVGLGPAAYGAALYSARYMLK---TLVIGET-PG--G------QLTEAGIVDDYLGLIEIQASDMIKVFNKHIEK 82 (323)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESS-TT--G------GGGGCCEECCSTTSTTEEHHHHHHHHHHHHHT
T ss_pred ccCEEEECccHHHHHHHHHHHHCCCc---EEEEecc-CC--C------eecccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999999999887 9999998 11 0 01111111122222111111122234455667
Q ss_pred cCcEEEeCceEEEEECCC--cEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCC
Q 011700 84 HGIELVLGTRVKSADVRR--KTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCS 161 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~--~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~ 161 (479)
++++++. ++|.+++.++ ..+.+.++.++.||+||+|||+.|..|++++........+++... .+ .....
T Consensus 83 ~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i~g~~~~~~~~~~~~~~-~~-------~~~~~ 153 (323)
T 3f8d_A 83 YEVPVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSV-AD-------APLFK 153 (323)
T ss_dssp TTCCEEE-SCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEECCCCCTTTTTTBTTTEESCHH-HH-------GGGGT
T ss_pred cCCEEEE-EEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCCccCCCCchhhhcCCceEEecc-CC-------HhHcC
Confidence 8999998 7899998764 356777778999999999999998888763332221244433211 11 11225
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEE
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAV 241 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v 241 (479)
+++++|||+|++++|+|..|.+.+.+|+++++.+++++ ++++ +.+.+++.||++++++.+.+++. ++.+..+
T Consensus 154 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~---~~~~---~~~~~~~~gv~~~~~~~v~~i~~--~~~~~~v 225 (323)
T 3f8d_A 154 NRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA---QPIY---VETVKKKPNVEFVLNSVVKEIKG--DKVVKQV 225 (323)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS---CHHH---HHHHHTCTTEEEECSEEEEEEEE--SSSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc---CHHH---HHHHHhCCCcEEEeCCEEEEEec--cCceeEE
Confidence 79999999999999999999999999999999988765 3333 33334456999999999999987 3555567
Q ss_pred EeCC---Cc--EEeccEEEEecCCCCChhhhhc-cccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccH
Q 011700 242 NLRD---GN--RLPTDMVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHV 314 (479)
Q Consensus 242 ~~~~---g~--~i~~D~Vi~a~G~~p~~~l~~~-~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~ 314 (479)
.+.+ |+ ++++|.|++++|++|++++++. ++.. ++|+|.||+++||+.|+|||+|||+..+. ....+
T Consensus 226 ~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~g~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~-------~~~~~ 298 (323)
T 3f8d_A 226 VVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTSAWL-------GFRQV 298 (323)
T ss_dssp EEEETTTCCEEEEECSEEEECCCEECCHHHHHHTTCCBCTTSSBCCCTTCBCSSTTEEECSTTBSTTT-------TCCCH
T ss_pred EEEECCCCceEEEEcCEEEEEECCCCChhHHhhcCeeecCCCcEecCCCceecCCCEEEcceecCCCC-------cccce
Confidence 6665 76 7999999999999999887754 4665 67899999999999999999999998631 11568
Q ss_pred HHHHHHHHHHHHHHcC
Q 011700 315 DSARKSAKHAVAAIME 330 (479)
Q Consensus 315 ~~A~~~g~~aa~~i~~ 330 (479)
..|..||+.||.+|..
T Consensus 299 ~~A~~~g~~aa~~i~~ 314 (323)
T 3f8d_A 299 ITAVAQGAVAATSAYR 314 (323)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eehhhHHHHHHHHHHH
Confidence 8899999999999864
No 63
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=100.00 E-value=1e-36 Score=297.31 Aligned_cols=291 Identities=17% Similarity=0.184 Sum_probs=208.9
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEE-EcCCCCCCCCCCcccccccCCCCCCCCCCccc-ccCCcccCCCHhH
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCI-ISEEPVAPYERPALSKGYLLPEAPARLPSFHT-CVGANEERLTPKW 80 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~l-ie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 80 (479)
+++||+|||||+||++||.+|+++|++ |+| +|++... ..+........+|.+.. .........+.++
T Consensus 3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~---v~li~e~~~~g--------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (315)
T 3r9u_A 3 AMLDVAIIGGGPAGLSAGLYATRGGLK---NVVMFEKGMPG--------GQITSSSEIENYPGVAQVMDGISFMAPWSEQ 71 (315)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHTCS---CEEEECSSSTT--------GGGGGCSCBCCSTTCCSCBCHHHHHHHHHHH
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCC---eEEEEeCCCCC--------ceeeeeceeccCCCCCCCCCHHHHHHHHHHH
Confidence 458999999999999999999999987 788 9995321 00111111112222210 0111112233455
Q ss_pred HHHcCcEEEeCceEEEEECCC--cEEE--eCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHH
Q 011700 81 YNEHGIELVLGTRVKSADVRR--KTLV--TATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNV 156 (479)
Q Consensus 81 ~~~~gv~~~~~~~v~~i~~~~--~~v~--~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~ 156 (479)
+++.+++++.+ +|..+ .+. +.+. +..+.++.||+||+|||+.|..|++++........+++......
T Consensus 72 ~~~~~v~~~~~-~v~~i-~~~~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~------- 142 (315)
T 3r9u_A 72 CMRFGLKHEMV-GVEQI-LKNSDGSFTIKLEGGKTELAKAVIVCTGSAPKKAGFKGEDEFFGKGVSTCATCDG------- 142 (315)
T ss_dssp HTTTCCEEECC-CEEEE-EECTTSCEEEEETTSCEEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHHHG-------
T ss_pred HHHcCcEEEEE-EEEEE-ecCCCCcEEEEEecCCEEEeCEEEEeeCCCCCCCCCCChhhcCCCeEEeeecccc-------
Confidence 66789999988 88888 433 3333 43333899999999999998888774332221234433222111
Q ss_pred HhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCC
Q 011700 157 MKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG 236 (479)
Q Consensus 157 l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g 236 (479)
....+++++|||+|++++|+|..|.+.+.+|+++++.+++. .++++. .+.+++.||++++++.+.+++. +++
T Consensus 143 -~~~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~---~~~~~~---~~~~~~~gv~~~~~~~v~~i~~-~~~ 214 (315)
T 3r9u_A 143 -FFYKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFR---AAPSTV---EKVKKNEKIELITSASVDEVYG-DKM 214 (315)
T ss_dssp -GGGTTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCB---SCHHHH---HHHHHCTTEEEECSCEEEEEEE-ETT
T ss_pred -cccCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCC---CCHHHH---HHHHhcCCeEEEeCcEEEEEEc-CCC
Confidence 11257999999999999999999999999999999998763 244443 4455789999999999999987 344
Q ss_pred cEEEEEeC--CCc--EEeccEEEEecCCCCChhhhhc-----cccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccC
Q 011700 237 KVVAVNLR--DGN--RLPTDMVVVGIGIRPNTSLFEG-----QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLG 306 (479)
Q Consensus 237 ~v~~v~~~--~g~--~i~~D~Vi~a~G~~p~~~l~~~-----~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g 306 (479)
.+..+.+. +|+ ++++|.|++++|++|++.+++. ++.. ++|+|.||+++||+.|+|||+|||+..+.
T Consensus 215 ~~~~v~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~~~~t~~~~v~a~GD~~~~~~---- 290 (315)
T 3r9u_A 215 GVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQTSVAGLFAAGDLRKDAP---- 290 (315)
T ss_dssp EEEEEEEECTTSCEEEECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBCSSTTEEECGGGBTTCC----
T ss_pred cEEEEEEEcCCCCeEEeecCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCCCcccCCCCEEEeecccCCch----
Confidence 55556655 775 7999999999999999998876 3665 56899999999999999999999986432
Q ss_pred ceeecccHHHHHHHHHHHHHHHcC
Q 011700 307 ETRRLEHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 307 ~~~~~~~~~~A~~~g~~aa~~i~~ 330 (479)
..+..|..||+.||.+|..
T Consensus 291 -----~~~~~A~~~g~~aa~~i~~ 309 (315)
T 3r9u_A 291 -----KQVICAAGDGAVAALSAMA 309 (315)
T ss_dssp -----CCHHHHHHHHHHHHHHHHH
T ss_pred -----hhhhhHHhhHHHHHHHHHH
Confidence 5678899999999999863
No 64
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=100.00 E-value=2.8e-37 Score=304.36 Aligned_cols=294 Identities=20% Similarity=0.232 Sum_probs=213.6
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccc-cCCcccCCCHhHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTC-VGANEERLTPKWYN 82 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 82 (479)
++||+|||||++|+++|..|+++|++ |+|||+.+... ......+........+|.+... ........+.++++
T Consensus 22 ~~~vvIIG~G~aGl~aA~~l~~~g~~---v~vie~~~~~~---~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
T 3itj_A 22 HNKVTIIGSGPAAHTAAIYLARAEIK---PILYEGMMANG---IAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQST 95 (338)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC---CEEECCSSBTT---BCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCC---EEEEecCCCCC---CCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHH
Confidence 58999999999999999999999987 89999975111 1111111111111122222110 11112233455667
Q ss_pred HcCcEEEeCceEEEEECCCcEEEe-----CCCcEEEeceEEeecCCCcccccccCCCCCC---CCCeEEecCHHHHHHHH
Q 011700 83 EHGIELVLGTRVKSADVRRKTLVT-----ATGETISYKILIIATGARALKLEEFGLSGSD---AENVCYLRDLADANRLV 154 (479)
Q Consensus 83 ~~gv~~~~~~~v~~i~~~~~~v~~-----~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~---~~~v~~~~~~~~~~~l~ 154 (479)
+.+++++.++ |..++.+.+.+.+ .++.++.||+||+|||++|..|++ +|.+ ...+.+... +.
T Consensus 96 ~~gv~i~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~~~~---~g~~~~~~~~~~~~~~------~~ 165 (338)
T 3itj_A 96 KFGTEIITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKRMHL---PGEETYWQKGISACAV------CD 165 (338)
T ss_dssp HTTCEEECSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEECCCCC---TTHHHHBTTTEESCHH------HH
T ss_pred HcCCEEEEeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcCCCCC---CCchhccCccEEEchh------cc
Confidence 7899999986 9999988765554 466789999999999999887776 4432 123332211 11
Q ss_pred HHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHh-CCcEEEcCCceEEEEEc
Q 011700 155 NVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS-KGVKFVKGTVLSSFDVD 233 (479)
Q Consensus 155 ~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~ 233 (479)
..+....+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++ . +.+.+.+.+ .||++++++.+.+++.
T Consensus 166 ~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~---~----~~~~~~l~~~~gv~i~~~~~v~~i~~- 237 (338)
T 3itj_A 166 GAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA---S----TIMQKRAEKNEKIEILYNTVALEAKG- 237 (338)
T ss_dssp TTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS---C----HHHHHHHHHCTTEEEECSEEEEEEEE-
T ss_pred cchhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC---C----HHHHHHHHhcCCeEEeecceeEEEEc-
Confidence 111122579999999999999999999999999999999987654 2 334445545 4999999999999987
Q ss_pred CCCcEEEEEeCC-----CcEEeccEEEEecCCCCChhhhhccccc-ccCcEEE-cCcccCCCCCeEEEeeeccccccccC
Q 011700 234 SNGKVVAVNLRD-----GNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKV-TGRLQSSNSSVYAVGDVAAFPLKLLG 306 (479)
Q Consensus 234 ~~g~v~~v~~~~-----g~~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~V-d~~l~t~~~~IyA~GD~~~~~~~~~g 306 (479)
+++.+..+.+.+ ++++++|.|++++|++|++.+++.++.. ++|+|.| |++++|+.|+|||+|||+..+.
T Consensus 238 ~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~v~~~~~~t~~~~vya~GD~~~~~~---- 313 (338)
T 3itj_A 238 DGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAGQVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKY---- 313 (338)
T ss_dssp SSSSEEEEEEEETTTTEEEEEECSEEEECSCEEECCGGGBTTBCBCTTSCBCCCTTSSBCSSTTEEECGGGGCSSC----
T ss_pred ccCcEEEEEEEECCCCceEEEEeCEEEEEeCCCCChhHhhCceEecCCCcEEEcCcccccCCCCEEEeeccCCCCc----
Confidence 445565677665 4679999999999999999988777766 5788884 8899999999999999997432
Q ss_pred ceeecccHHHHHHHHHHHHHHHcC
Q 011700 307 ETRRLEHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 307 ~~~~~~~~~~A~~~g~~aa~~i~~ 330 (479)
..+..|..+|+.||.+|..
T Consensus 314 -----~~~~~A~~~g~~aa~~i~~ 332 (338)
T 3itj_A 314 -----RQAITSAGSGCMAALDAEK 332 (338)
T ss_dssp -----CCHHHHHHHHHHHHHHHHH
T ss_pred -----cceeeehhhhHHHHHHHHH
Confidence 4577899999999999864
No 65
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=100.00 E-value=6.7e-37 Score=300.86 Aligned_cols=292 Identities=19% Similarity=0.232 Sum_probs=212.9
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
.+||+|||||+||+++|..|++.|++ |+|||+++..... . ............+.+...........+.+.+++
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~~gG~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (332)
T 3lzw_A 7 VYDITIIGGGPVGLFTAFYGGMRQAS---VKIIESLPQLGGQ--L--SALYPEKYIYDVAGFPKIRAQELINNLKEQMAK 79 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCHH--H--HHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTT
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCC---EEEEEcCCCCCce--e--hhcCCCceEeccCCCCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999999998886 9999998642200 0 000000001122222211111122234455566
Q ss_pred cCcEEEeCceEEEEECCCc---EEEeCCCcEEEeceEEeecCC---CcccccccCCCCCCC---CCeEEecCHHHHHHHH
Q 011700 84 HGIELVLGTRVKSADVRRK---TLVTATGETISYKILIIATGA---RALKLEEFGLSGSDA---ENVCYLRDLADANRLV 154 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~---~v~~~~g~~~~~d~lviAtG~---~~~~~~~~g~~g~~~---~~v~~~~~~~~~~~l~ 154 (479)
++++++.+++|..++.+.+ .+.+.+++ +.||+||+|||+ .|..|++ +|.+. ..+++ .+.+...
T Consensus 80 ~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~~~~~---~g~~~~~g~~~~~--~~~~~~~-- 151 (332)
T 3lzw_A 80 FDQTICLEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNGAFKPRKLEL---ENAEQYEGKNLHY--FVDDLQK-- 151 (332)
T ss_dssp SCCEEECSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTSCCEECCCCC---TTGGGGBTTTEES--SCSCGGG--
T ss_pred hCCcEEccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCCcCCCCCCCC---CChhhccCceEEE--ecCCHHH--
Confidence 7999999999999998765 67777775 999999999999 6776665 55432 23332 2222221
Q ss_pred HHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcC
Q 011700 155 NVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDS 234 (479)
Q Consensus 155 ~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~ 234 (479)
..+++++|||+|++|+|+|..|.+.+.+|+++++.+++.+ .++. .+.+++.||++++++.+.+++.+
T Consensus 152 -----~~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~--~~~~-----~~~l~~~gv~~~~~~~v~~i~~~- 218 (332)
T 3lzw_A 152 -----FAGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRA--HEHS-----VENLHASKVNVLTPFVPAELIGE- 218 (332)
T ss_dssp -----GBTCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSS--CHHH-----HHHHHHSSCEEETTEEEEEEECS-
T ss_pred -----cCCCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCc--cHHH-----HHHHhcCCeEEEeCceeeEEecC-
Confidence 2479999999999999999999999999999999988654 2322 34478899999999999999863
Q ss_pred CCcEEEEEeCC-----CcEEeccEEEEecCCCCChhhhhc-ccccccCcEEEcCcccCCCCCeEEEeeeccccccccCce
Q 011700 235 NGKVVAVNLRD-----GNRLPTDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGET 308 (479)
Q Consensus 235 ~g~v~~v~~~~-----g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~ 308 (479)
++ ...+.+.+ ++++++|.|++++|++|++++++. ++..++|+|.||+++||+.|+|||+|||+..+..
T Consensus 219 ~~-~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~----- 292 (332)
T 3lzw_A 219 DK-IEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDIEKNSIVVKSTMETNIEGFFAAGDICTYEGK----- 292 (332)
T ss_dssp SS-CCEEEEEETTSCCEEEEECSEEEECCCEECCCGGGGGSSCCEETTEEECCTTSBCSSTTEEECGGGEECTTC-----
T ss_pred Cc-eEEEEEEecCCCceEEEECCEEEEeeccCCCchHHhhcCccccCCeEEeCCCCceecCCEEEccceecCCCC-----
Confidence 22 34455554 357999999999999999987764 4556789999999999999999999999975422
Q ss_pred eecccHHHHHHHHHHHHHHHcCC
Q 011700 309 RRLEHVDSARKSAKHAVAAIMEP 331 (479)
Q Consensus 309 ~~~~~~~~A~~~g~~aa~~i~~~ 331 (479)
...+..|..||+.||.+|...
T Consensus 293 --~~~~~~A~~~g~~aa~~i~~~ 313 (332)
T 3lzw_A 293 --VNLIASGFGEAPTAVNNAKAY 313 (332)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHH
T ss_pred --cceEeeehhhHHHHHHHHHHh
Confidence 157888999999999998753
No 66
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=100.00 E-value=3e-38 Score=321.90 Aligned_cols=307 Identities=18% Similarity=0.207 Sum_probs=219.2
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhH
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKW 80 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (479)
|+ ++|||||||+||++||.+|++++. +.+|+|||+++++.|. |.+.. +.... ... .+....+.++
T Consensus 1 M~--K~VvIIGgG~aGl~aA~~L~~~~~-~~~VtlI~~~~~~~~~-p~l~~-v~~g~--~~~--------~~i~~~~~~~ 65 (430)
T 3hyw_A 1 MA--KHVVVIGGGVGGIATAYNLRNLMP-DLKITLISDRPYFGFT-PAFPH-LAMGW--RKF--------EDISVPLAPL 65 (430)
T ss_dssp -C--CEEEEECSSHHHHHHHHHHHHHCT-TCEEEEECSSSEEECG-GGHHH-HHHTC--SCG--------GGSEEESTTT
T ss_pred CC--CcEEEECCCHHHHHHHHHHhccCc-CCeEEEEcCCCCCccC-ccHHH-HhcCC--CCH--------HHhhhcHHHH
Confidence 65 589999999999999999998763 5679999999876663 43321 10000 000 0111234556
Q ss_pred HHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcC
Q 011700 81 YNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSC 160 (479)
Q Consensus 81 ~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~ 160 (479)
+++.|++++.+ +|++||+++++|++.+|++++||+||||||+++. +++ +|.+ ++.+.+++.+++.++++.+++.
T Consensus 66 ~~~~gv~~i~~-~v~~Id~~~~~V~~~~g~~i~YD~LViAtG~~~~-~~i---~G~~-e~~~~~~~~~~a~~~~~~l~~~ 139 (430)
T 3hyw_A 66 LPKFNIEFINE-KAESIDPDANTVTTQSGKKIEYDYLVIATGPKLV-FGA---EGQE-ENSTSICTAEHALETQKKLQEL 139 (430)
T ss_dssp GGGGTEEEECS-CEEEEETTTTEEEETTCCEEECSEEEECCCCEEE-CCS---BTHH-HHSCCCSSHHHHHHHHHHHHHH
T ss_pred HHHCCcEEEEe-EEEEEECCCCEEEECCCCEEECCEEEEeCCCCcc-CCc---cCcc-cCcCCcccHHHHHHHHHHHHhh
Confidence 77889999988 8999999999999999999999999999999864 334 5543 4566788889998888777653
Q ss_pred -CCCCEEEECCCh------HHHHHH----HHHhhCC----CeEEEEeecCcccc--ccCCHHHHHHHHHHHHhCCcEEEc
Q 011700 161 -SGGNAVVIGGGY------IGMECA----ASLVINK----INVTMVFPEAHCMA--RLFTPKIASYYEEYYKSKGVKFVK 223 (479)
Q Consensus 161 -~~~~vvVIGgG~------~g~E~A----~~l~~~g----~~Vtlv~~~~~~l~--~~~~~~~~~~~~~~l~~~GV~i~~ 223 (479)
..+.++|+|++. .+.|++ ..+.+.+ .+|++++..+.+.. ...++...+.+++.++++||++++
T Consensus 140 ~~~~~~vv~gg~~gve~~~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~GV~~~~ 219 (430)
T 3hyw_A 140 YANPGPVVIGAIPGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIA 219 (430)
T ss_dssp HHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEEC
T ss_pred ccCCceEEEeCCCcEEEhHHHHHHHHHHHHHHHHhcccccceeeeecccchhhhccchhhHHHHHHHHHHHHhCCeEEEe
Confidence 234455555542 223443 3444554 57888887765422 224567788899999999999999
Q ss_pred CCceEEEEEcCCCcEEEEEeCCC--cEEeccEEEEecCCCCChhhhhcccc--c-ccCcEEEcCccc-CCCCCeEEEeee
Q 011700 224 GTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTSLFEGQLT--L-EKGGIKVTGRLQ-SSNSSVYAVGDV 297 (479)
Q Consensus 224 ~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~Vi~a~G~~p~~~l~~~~~~--~-~~g~i~Vd~~l~-t~~~~IyA~GD~ 297 (479)
++.|++++. + .+ .+...+| +++++|.+++++|.+|+..+...+.. . .+|.|.||++|| |++|||||+|||
T Consensus 220 ~~~v~~v~~--~-~~-~~~~~~g~~~~i~~d~vi~~~G~~~~~~~~~~~~~l~~~~~g~i~vd~~lq~t~~~~IfAiGD~ 295 (430)
T 3hyw_A 220 NVAVKAIEP--D-KV-IYEDLNGNTHEVPAKFTMFMPSFQGPEVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVV 295 (430)
T ss_dssp SCEEEEECS--S-EE-EEECTTSCEEEEECSEEEEECEEECCHHHHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECSTT
T ss_pred CceEEEEeC--C-ce-EEEeeCCCceEeecceEEEeccCCCchHHHhcccccccCCceEEEecccccCCCCCCEEEeccE
Confidence 999999964 2 22 2344443 57999999999999999766655433 3 356799999999 799999999999
Q ss_pred ccccccccCc--eeecccHHHHHHHHHHHHHHHcCCC
Q 011700 298 AAFPLKLLGE--TRRLEHVDSARKSAKHAVAAIMEPD 332 (479)
Q Consensus 298 ~~~~~~~~g~--~~~~~~~~~A~~~g~~aa~~i~~~~ 332 (479)
+..+...... ....++...|.+||+++|+||+...
T Consensus 296 a~~p~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni~~~l 332 (430)
T 3hyw_A 296 TAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVNDI 332 (430)
T ss_dssp BCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCcccCcCcCccchHHHHHHHHHHHHHHHHHHHh
Confidence 9876432111 0123677889999999999998543
No 67
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=100.00 E-value=1.3e-36 Score=293.98 Aligned_cols=281 Identities=19% Similarity=0.116 Sum_probs=205.1
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhH
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKW 80 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (479)
|+ +||+|||||+||+++|..|+++|++ |+|||+++..... +.. ...++.............+.+.
T Consensus 1 m~--~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~~~~~-~~~---------~~~~~~~~~~~~~~~~~~~~~~ 65 (297)
T 3fbs_A 1 MK--FDVIIIGGSYAGLSAALQLGRARKN---ILLVDAGERRNRF-ASH---------SHGFLGQDGKAPGEIIAEARRQ 65 (297)
T ss_dssp CC--EEEEEECCSHHHHHHHHHHHHTTCC---EEEEECCCCGGGG-CSC---------CCSSTTCTTCCHHHHHHHHHHH
T ss_pred CC--CCEEEECCCHHHHHHHHHHHhCCCC---EEEEeCCCccccc-chh---------hcCCcCCCCCCHHHHHHHHHHH
Confidence 54 8999999999999999999999986 9999997531100 000 1111111100001111223344
Q ss_pred HHHc-CcEEEeCceEEEEECCC--cEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHH
Q 011700 81 YNEH-GIELVLGTRVKSADVRR--KTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVM 157 (479)
Q Consensus 81 ~~~~-gv~~~~~~~v~~i~~~~--~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l 157 (479)
+.++ +++++.+ +|..++.++ ..+.+.+++++.||+||+|||+.|+.|+++++.......+++... .+.
T Consensus 66 ~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~~~~g~~~~~~~~~~~~~~-~~~------- 136 (297)
T 3fbs_A 66 IERYPTIHWVEG-RVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDELPEIAGLRERWGSAVFHCPY-CHG------- 136 (297)
T ss_dssp HTTCTTEEEEES-CEEEEEEETTEEEEEETTSCEEEEEEEEECCCCEEECCCCBTTGGGBTTTEESCHH-HHT-------
T ss_pred HHhcCCeEEEEe-EEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCCCCCCCCchhhcCCeeEEccc-Ccc-------
Confidence 4455 7888776 899888764 367778888999999999999999888764332211233433221 111
Q ss_pred hcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCc
Q 011700 158 KSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGK 237 (479)
Q Consensus 158 ~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~ 237 (479)
....+++++|||+|++|+|+|..|.+.| +|+++.+.+.. +++ .+.+.+++.||+++. +.+.+++. ++
T Consensus 137 ~~~~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~~----~~~----~~~~~l~~~gv~i~~-~~v~~i~~--~~- 203 (297)
T 3fbs_A 137 YELDQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIVE----PDA----DQHALLAARGVRVET-TRIREIAG--HA- 203 (297)
T ss_dssp GGGTTCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTCC----CCH----HHHHHHHHTTCEEEC-SCEEEEET--TE-
T ss_pred hhhcCCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCCC----CCH----HHHHHHHHCCcEEEc-ceeeeeec--CC-
Confidence 1125899999999999999999999999 99999887652 343 356677889999996 88999975 22
Q ss_pred EEEEEeCCCcEEeccEEEEecCCCCChhhhhc-ccccc---cC-cEEEcCcccCCCCCeEEEeeeccccccccCceeecc
Q 011700 238 VVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTLE---KG-GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLE 312 (479)
Q Consensus 238 v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~~---~g-~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~ 312 (479)
.+.+.+|+++++|.|++++|++|++++++. ++..+ +| +|.||+++||+.|+|||+|||+..+ .
T Consensus 204 --~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~g~~~~~~~~G~~i~vd~~~~t~~~~vya~GD~~~~~----------~ 271 (297)
T 3fbs_A 204 --DVVLADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQTTARGIFACGDVARPA----------G 271 (297)
T ss_dssp --EEEETTSCEEEESEEEECCEEECCCSCHHHHTCCEEEETTEEEECCCTTCBCSSTTEEECSGGGCTT----------C
T ss_pred --eEEeCCCCEEEEEEEEEccCcccCchhHHhcCCccccCCCCceEEeCCCCccCCCCEEEEeecCCch----------H
Confidence 578899999999999999999999887654 45543 35 7999999999999999999999864 4
Q ss_pred cHHHHHHHHHHHHHHHcC
Q 011700 313 HVDSARKSAKHAVAAIME 330 (479)
Q Consensus 313 ~~~~A~~~g~~aa~~i~~ 330 (479)
.+..|..||+.||.+|..
T Consensus 272 ~~~~A~~~g~~aa~~i~~ 289 (297)
T 3fbs_A 272 SVALAVGDGAMAGAAAHR 289 (297)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHH
Confidence 578899999999999864
No 68
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=100.00 E-value=2.9e-36 Score=304.80 Aligned_cols=302 Identities=20% Similarity=0.175 Sum_probs=227.5
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
.++|||||||+||++||.+|++++. ..+|+|||+++.+.| .|.+ ........ .. .......+.+.+
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~-~~~Vtlie~~~~~~~-~p~~-~~v~~g~~--~~---------~~~~~~~~~~~~ 67 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADP-SIEVTLIEPNETYYT-CYMS-NEVIGGDR--EL---------ASLRVGYDGLRA 67 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCT-TSEEEEECSCSSEEC-STTH-HHHHHTSS--CG---------GGGEECSHHHHH
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCc-CCeEEEEeCCCCCCC-ccCH-HHHhcCCC--CH---------HHHhhCHHHHHH
Confidence 3689999999999999999998764 467999999875322 2222 11111100 00 001123345667
Q ss_pred cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCC-CCCCeEEecCHHHHHHHHHHHhcCCC
Q 011700 84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGS-DAENVCYLRDLADANRLVNVMKSCSG 162 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~-~~~~v~~~~~~~~~~~l~~~l~~~~~ 162 (479)
+|++++.+ +|+.||++++++.+.+++++.||+||||||+++..++++|+... ....++.+++.+++..+++.++....
T Consensus 68 ~gv~~i~~-~v~~id~~~~~v~~~~g~~i~yd~LviAtG~~~~~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (401)
T 3vrd_B 68 HGIQVVHD-SALGIDPDKKLVKTAGGAEFAYDRCVVAPGIDLLYDKIEGYSEALAAKLPHAWKAGEQTALLRRQLESMDD 146 (401)
T ss_dssp TTCEEECS-CEEEEETTTTEEEETTSCEEECSEEEECCCEEECGGGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHHSCT
T ss_pred CCCEEEEe-EEEEEEccCcEEEecccceeecceeeeccCCccccCCccCchhhcccCccceeccHHHHHHHHHHHHhccc
Confidence 89999987 89999999999999999999999999999999998888554321 12345667788888888888887655
Q ss_pred CCEEEECCCh-----------HHHHHHHHHhhCC--CeEEEEeecCcccc-ccCCHHHHHHHHHHHHhCCcEEEcCCceE
Q 011700 163 GNAVVIGGGY-----------IGMECAASLVINK--INVTMVFPEAHCMA-RLFTPKIASYYEEYYKSKGVKFVKGTVLS 228 (479)
Q Consensus 163 ~~vvVIGgG~-----------~g~E~A~~l~~~g--~~Vtlv~~~~~~l~-~~~~~~~~~~~~~~l~~~GV~i~~~~~v~ 228 (479)
.+.+|++++. .+++++..+++.+ .+|+++++.+.+.. ..+++.+.+.+.+.+++.||++++++.+.
T Consensus 147 ~~~~v~~~~~~~i~~~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~v~ 226 (401)
T 3vrd_B 147 GGVVIIAPPAPPFRCPPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGPDAA 226 (401)
T ss_dssp TCEEEEECCSSSCBCTTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTTTTC
T ss_pred CCcEEEecCCccEEeehHHHHHHHHHHHHHHhcCCCCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEeCceEE
Confidence 6666655432 3456666666554 78999998877632 22567777777778889999999999999
Q ss_pred EEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhhcccccccCcEEEcCc-cc-CCCCCeEEEeeeccc-ccccc
Q 011700 229 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGR-LQ-SSNSSVYAVGDVAAF-PLKLL 305 (479)
Q Consensus 229 ~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~~~~~~~g~i~Vd~~-l~-t~~~~IyA~GD~~~~-~~~~~ 305 (479)
.++.+.+. ..+.+.+|+++++|.+++++|.+|+..+.+.++..++|+|.||++ || |++|||||+|||+.. +.+
T Consensus 227 ~v~~~~~~--~~v~~~~g~~i~~D~vi~~~g~~~~~~~~~~gl~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~~p-- 302 (401)
T 3vrd_B 227 VVKTDTEA--MTVETSFGETFKAAVINLIPPQRAGKIAQSASLTNDSGWCPVDIRTFESSLQPGIHVIGDACNAAPMP-- 302 (401)
T ss_dssp EEEEETTT--TEEEETTSCEEECSEEEECCCEEECHHHHHTTCCCTTSSBCBCTTTCBBSSSTTEEECGGGBCCTTSC--
T ss_pred EEEecccc--eEEEcCCCcEEEeeEEEEecCcCCchhHhhccccccCCCEEECCCcceecCCCCEEEecccccCCCCC--
Confidence 99874433 357889999999999999999999976666677668899999987 66 699999999999864 322
Q ss_pred CceeecccHHHHHHHHHHHHHHHcC
Q 011700 306 GETRRLEHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 306 g~~~~~~~~~~A~~~g~~aa~~i~~ 330 (479)
+++..|.+||+++|+||+.
T Consensus 303 ------k~a~~A~~qa~v~A~ni~~ 321 (401)
T 3vrd_B 303 ------KSAYSANSQAKVAAAAVVA 321 (401)
T ss_dssp ------BSHHHHHHHHHHHHHHHHH
T ss_pred ------chHHHHHHHHHHHHHHHHH
Confidence 5788899999999999974
No 69
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=100.00 E-value=9.5e-36 Score=310.25 Aligned_cols=291 Identities=23% Similarity=0.292 Sum_probs=215.8
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN 82 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (479)
..+||+||||||||++||.+|++.|++ |+|+|+.....+ ........++.+....+......+.+.++
T Consensus 211 ~~~dVvIIGgG~AGl~aA~~la~~G~~---v~lie~~~GG~~---------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 278 (521)
T 1hyu_A 211 DAYDVLIVGSGPAGAAAAVYSARKGIR---TGLMGERFGGQV---------LDTVDIENYISVPKTEGQKLAGALKAHVS 278 (521)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSTTGGG---------TTCSCBCCBTTBSSBCHHHHHHHHHHHHH
T ss_pred CcccEEEECCcHHHHHHHHHHHhCCCe---EEEEECCCCCcc---------cccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 358999999999999999999999887 899987421111 00000111111111111111223345566
Q ss_pred HcCcEEEeCceEEEEECC-----CcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHH
Q 011700 83 EHGIELVLGTRVKSADVR-----RKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVM 157 (479)
Q Consensus 83 ~~gv~~~~~~~v~~i~~~-----~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l 157 (479)
+++++++.+++|..++.+ ...+.+.+|+++.||+||+|||++|+.|+++|........++++..+...
T Consensus 279 ~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~~~ipG~~~~~~~~v~~~~~~~~~------- 351 (521)
T 1hyu_A 279 DYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCDGP------- 351 (521)
T ss_dssp TSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTTTTTTTTEECCTTCCGG-------
T ss_pred HcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCCCCCCChhhhcCceEEEeecCchh-------
Confidence 789999999999999864 45677888889999999999999988877644332223445544432211
Q ss_pred hcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCC
Q 011700 158 KSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNG 236 (479)
Q Consensus 158 ~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g 236 (479)
...+++++|||+|++|+|+|..|++.+.+||++++.+.++. + +.+.+.+++ .||++++++.+++++. +++
T Consensus 352 -~~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~---~----~~l~~~l~~~~gV~v~~~~~v~~i~~-~~~ 422 (521)
T 1hyu_A 352 -LFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---D----QVLQDKVRSLKNVDIILNAQTTEVKG-DGS 422 (521)
T ss_dssp -GGBTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS---C----HHHHHHHTTCTTEEEECSEEEEEEEE-CSS
T ss_pred -hcCCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc---C----HHHHHHHhcCCCcEEEeCCEEEEEEc-CCC
Confidence 12579999999999999999999999999999999887653 3 335566766 6999999999999987 345
Q ss_pred cEEEEEeCC---Cc--EEeccEEEEecCCCCChhhhhccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceee
Q 011700 237 KVVAVNLRD---GN--RLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRR 310 (479)
Q Consensus 237 ~v~~v~~~~---g~--~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~ 310 (479)
++..+.+.+ |+ ++++|.|++++|++|++++++..+.. ++|+|.||+++||++|+|||+|||+..+.
T Consensus 423 ~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~l~~~~~G~I~Vd~~~~ts~p~VfA~GD~~~~~~-------- 494 (521)
T 1hyu_A 423 KVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALERNRMGEIIIDAKCETSVKGVFAAGDCTTVPY-------- 494 (521)
T ss_dssp SEEEEEEEETTTCCEEEEECSEEEECCCEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTBCCSS--------
T ss_pred cEEEEEEEeCCCCceEEEEcCEEEECcCCCCCchHHhhhhccCCCCcEEeCCCCCCCCCCEEEeecccCCCc--------
Confidence 665666643 53 68999999999999999888765555 57899999999999999999999998753
Q ss_pred cccHHHHHHHHHHHHHHHcC
Q 011700 311 LEHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 311 ~~~~~~A~~~g~~aa~~i~~ 330 (479)
..+..|+.+|+.||.+|..
T Consensus 495 -~~~~~A~~~g~~aa~~i~~ 513 (521)
T 1hyu_A 495 -KQIIIATGEGAKASLSAFD 513 (521)
T ss_dssp -CCHHHHHHHHHHHHHHHHH
T ss_pred -ceeeehHHhHHHHHHHHHH
Confidence 4577899999999998863
No 70
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=100.00 E-value=3.3e-36 Score=307.64 Aligned_cols=310 Identities=18% Similarity=0.156 Sum_probs=228.3
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHH---cCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTK---RGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLT 77 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~---~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (479)
|+..+||||||||+||++||..|++ .+.+ |+|||+++.+.|. +.+.. +... .. ........+
T Consensus 1 M~~m~~vvIIGgG~aGl~aA~~L~~~~~~g~~---Vtlie~~~~~~~~-~~~~~-~~~g--~~--------~~~~~~~~l 65 (437)
T 3sx6_A 1 MRGSAHVVILGAGTGGMPAAYEMKEALGSGHE---VTLISANDYFQFV-PSNPW-VGVG--WK--------ERDDIAFPI 65 (437)
T ss_dssp CTTSCEEEEECCSTTHHHHHHHHHHHHGGGSE---EEEECSSSEEECG-GGHHH-HHHT--SS--------CHHHHEEEC
T ss_pred CCCCCcEEEECCcHHHHHHHHHHhccCCCcCE---EEEEeCCCCCccc-CCccc-cccC--cc--------CHHHHHHHH
Confidence 6556899999999999999999998 5655 9999999865442 21110 0000 00 001122456
Q ss_pred HhHHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCC--CCeEEecCHHHHHHHHH
Q 011700 78 PKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDA--ENVCYLRDLADANRLVN 155 (479)
Q Consensus 78 ~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~--~~v~~~~~~~~~~~l~~ 155 (479)
.+++++.+++++.+ +|+.++++++++.+.+++++.||+||+|||++|..|++ ||.+. .+.+...+..++.++.+
T Consensus 66 ~~~~~~~gv~~~~~-~v~~id~~~~~V~~~~g~~i~~d~lviAtG~~~~~~~i---pG~~~~~~~~~~~~~~~~a~~~~~ 141 (437)
T 3sx6_A 66 RHYVERKGIHFIAQ-SAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAFENV---PGSDPHEGPVQSICTVDHAERAFA 141 (437)
T ss_dssp HHHHHTTTCEEECS-CEEEEETTTTEEEETTSCEEECSEEEECCCCEECGGGS---TTCSTTTSSEECCSSHHHHHHHHH
T ss_pred HHHHHHCCCEEEEe-EEEEEEcCCCEEEECCCCEEECCEEEECCCCCcCcccC---CCCCcccCcceecccccHHHHHHH
Confidence 77888899999875 89999999999999999899999999999999988877 55543 35667778888887776
Q ss_pred HHhcC-CCCCEEEECCChH----H--HHHH----HHHhhCCCe-----EEEEeecCccccccC--CHHHHHHHHHHHHhC
Q 011700 156 VMKSC-SGGNAVVIGGGYI----G--MECA----ASLVINKIN-----VTMVFPEAHCMARLF--TPKIASYYEEYYKSK 217 (479)
Q Consensus 156 ~l~~~-~~~~vvVIGgG~~----g--~E~A----~~l~~~g~~-----Vtlv~~~~~~l~~~~--~~~~~~~~~~~l~~~ 217 (479)
.++.. .+++++|||+|+. | +|+| ..+.+.|.+ |+++++.+.+.+..+ .++..+.+.+.++++
T Consensus 142 ~~~~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 221 (437)
T 3sx6_A 142 EYQALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEE 221 (437)
T ss_dssp HHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHHHHHHT
T ss_pred HHHHHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcchHHHHHHHHHHHHC
Confidence 55432 2456788898554 4 7777 566677765 999999987633111 145788899999999
Q ss_pred CcEEEcCCceEEEEEcCCCcEEEEEeCC-----CcEEeccEEEEecCCCCChhhhh-cccccccCcEEEcCcccC-CCCC
Q 011700 218 GVKFVKGTVLSSFDVDSNGKVVAVNLRD-----GNRLPTDMVVVGIGIRPNTSLFE-GQLTLEKGGIKVTGRLQS-SNSS 290 (479)
Q Consensus 218 GV~i~~~~~v~~i~~~~~g~v~~v~~~~-----g~~i~~D~Vi~a~G~~p~~~l~~-~~~~~~~g~i~Vd~~l~t-~~~~ 290 (479)
||++++++.+++++. ++........+ ++++++|.+++++|++|+..+.+ .++..++|+|.||+++|| ++||
T Consensus 222 gI~~~~~~~v~~v~~--~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~~~gl~~~~G~i~Vd~~l~t~~~~~ 299 (437)
T 3sx6_A 222 GIEAYTNCKVTKVED--NKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGLCNPGGFVLVDEHQRSKKYAN 299 (437)
T ss_dssp TCEEECSEEEEEEET--TEEEEEEECTTSCEEEEEEEECSEEEEECCEECCHHHHTSTTTBCTTSCBCBCTTSBBSSCTT
T ss_pred CCEEEcCCEEEEEEC--CeEEEEecccCCccccceEEEEeEEEEcCCCcCchhhhccccccCCCCcEEeChhccCCCCCC
Confidence 999999999999974 32211111233 46799999999999999887665 355447889999999999 9999
Q ss_pred eEEEeeeccccccccCce---eecccHHHHHHHHHHHHHHHcCCC
Q 011700 291 VYAVGDVAAFPLKLLGET---RRLEHVDSARKSAKHAVAAIMEPD 332 (479)
Q Consensus 291 IyA~GD~~~~~~~~~g~~---~~~~~~~~A~~~g~~aa~~i~~~~ 332 (479)
|||+|||+..+... +.+ ...+++..|..||+.+|+||....
T Consensus 300 Ifa~GD~~~~~~~~-~~~~~~~~pk~~~~A~~qg~~aA~ni~~~l 343 (437)
T 3sx6_A 300 IFAAGIAIAIPPVE-TTPVPTGAPKTGYMIESMVSAAVHNIKADL 343 (437)
T ss_dssp EEECGGGBCCCCSC-CCSSCCCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEeccCCcC-CCcCCCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 99999999876421 111 023578899999999999997543
No 71
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=100.00 E-value=4.6e-36 Score=295.41 Aligned_cols=302 Identities=20% Similarity=0.198 Sum_probs=208.9
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCccccc-CCcccCCCHhHH
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCV-GANEERLTPKWY 81 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 81 (479)
+++||+|||||++|+++|..|++.|++ |+|||+..... ......+.........|.+.... .......+.+.+
T Consensus 7 ~~~~vvIIG~G~aGl~~A~~l~~~g~~---v~lie~~~~~~---~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (333)
T 1vdc_A 7 HNTRLCIVGSGPAAHTAAIYAARAELK---PLLFEGWMAND---IAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQS 80 (333)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCC---CEEECCSSBTT---BCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCe---EEEEeccCccc---cCCCceeeeccccccCCCCccCCCHHHHHHHHHHHH
Confidence 357999999999999999999999887 89999821000 00001111111111222221100 011112234556
Q ss_pred HHcCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCcccccccCCCCCCC-CCeEEecCHHHHHHHHHHHh
Q 011700 82 NEHGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALKLEEFGLSGSDA-ENVCYLRDLADANRLVNVMK 158 (479)
Q Consensus 82 ~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~-~~v~~~~~~~~~~~l~~~l~ 158 (479)
++.+++++.++ |..++.+.+ ++.+ ++++++||+||+|||++|..|++ +|.+. .+++..+.+.....+...+.
T Consensus 81 ~~~gv~~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (333)
T 1vdc_A 81 ERFGTTIFTET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAKRLSF---VGSGEVLGGFWNRGISACAVCDGAAP 155 (333)
T ss_dssp HHTTCEEECCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEECCCCC---BTCSSSSSCCBTTTEESCHHHHTTSG
T ss_pred HHCCCEEEEeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcCCCCC---CCccccccccccCcEEEeccCccchh
Confidence 67899999985 888887655 5666 77889999999999999888776 44332 11111111111111111111
Q ss_pred cCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCC-c
Q 011700 159 SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG-K 237 (479)
Q Consensus 159 ~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g-~ 237 (479)
...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+.. .+.+. .+.+++.||++++++.+.+++.++++ +
T Consensus 156 ~~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~---~~~~~---~~~~~~~gv~i~~~~~v~~i~~~~~~~~ 229 (333)
T 1vdc_A 156 IFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA---SKIMQ---QRALSNPKIDVIWNSSVVEAYGDGERDV 229 (333)
T ss_dssp GGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHHHH---HHHHTCTTEEEECSEEEEEEEESSSSSS
T ss_pred hcCCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCc---cHHHH---HHHHhCCCeeEecCCceEEEeCCCCccc
Confidence 12579999999999999999999999999999999887532 33322 24457789999999999999873321 5
Q ss_pred EEEEEeC---CC--cEEeccEEEEecCCCCChhhhhccccc-ccCcEEEcCc-ccCCCCCeEEEeeeccccccccCceee
Q 011700 238 VVAVNLR---DG--NRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGR-LQSSNSSVYAVGDVAAFPLKLLGETRR 310 (479)
Q Consensus 238 v~~v~~~---~g--~~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd~~-l~t~~~~IyA~GD~~~~~~~~~g~~~~ 310 (479)
+..+.+. +| +++++|.|++++|++|++++++.++.. ++|+|.||++ ++|+.|+|||+|||+..+.
T Consensus 230 v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~~~t~~~~vya~GD~~~~~~-------- 301 (333)
T 1vdc_A 230 LGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKY-------- 301 (333)
T ss_dssp EEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTSSCBCTTSCBCCCTTSCBCSSTTEEECGGGGCSSC--------
T ss_pred eeeEEEEecCCCceEEEecCEEEEEeCCccchHHhhccccccCCCCEEechhhcccCCCCEEEeeeccCCCc--------
Confidence 5456554 45 579999999999999999988766665 4789999997 6899999999999998642
Q ss_pred cccHHHHHHHHHHHHHHHcC
Q 011700 311 LEHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 311 ~~~~~~A~~~g~~aa~~i~~ 330 (479)
..+..|..+|+.||.+|..
T Consensus 302 -~~~~~A~~~g~~aa~~i~~ 320 (333)
T 1vdc_A 302 -RQAITAAGTGCMAALDAEH 320 (333)
T ss_dssp -CCHHHHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHhHHHHHHHHHH
Confidence 4577899999999998864
No 72
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=100.00 E-value=6.3e-36 Score=294.92 Aligned_cols=289 Identities=22% Similarity=0.286 Sum_probs=207.0
Q ss_pred CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCccccc-CCcccCCCHhH
Q 011700 2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCV-GANEERLTPKW 80 (479)
Q Consensus 2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 80 (479)
+.++||+|||||+||+++|..|++.|++ |+|||+.... ..+........+|.+.... .......+.++
T Consensus 12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~g--------g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (335)
T 2a87_A 12 HPVRDVIVIGSGPAGYTAALYAARAQLA---PLVFEGTSFG--------GALMTTTDVENYPGFRNGITGPELMDEMREQ 80 (335)
T ss_dssp CCCEEEEEECCHHHHHHHHHHHHHTTCC---CEEECCSSCS--------CGGGSCSCBCCSTTCTTCBCHHHHHHHHHHH
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCCC--------CceeccchhhhcCCCCCCCCHHHHHHHHHHH
Confidence 4468999999999999999999999887 8999975321 0111111111223221100 01111233445
Q ss_pred HHHcCcEEEeCceEEEEECC-CcEE-EeCCCcEEEeceEEeecCCCcccccccCCCCCC---CCCeEEecCHHHHHHHHH
Q 011700 81 YNEHGIELVLGTRVKSADVR-RKTL-VTATGETISYKILIIATGARALKLEEFGLSGSD---AENVCYLRDLADANRLVN 155 (479)
Q Consensus 81 ~~~~gv~~~~~~~v~~i~~~-~~~v-~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~---~~~v~~~~~~~~~~~l~~ 155 (479)
+.+.+++++.++ +..++.. ..++ .+.+++++.||+||+|||+.|..|++ +|.+ ...++++....+
T Consensus 81 ~~~~~v~~~~~~-v~~i~~~~~~~v~~~~~g~~~~~d~lviAtG~~~~~~~i---~g~~~~~~~~~~~~~~~~~------ 150 (335)
T 2a87_A 81 ALRFGADLRMED-VESVSLHGPLKSVVTADGQTHRARAVILAMGAAARYLQV---PGEQELLGRGVSSCATCDG------ 150 (335)
T ss_dssp HHHTTCEEECCC-EEEEECSSSSEEEEETTSCEEEEEEEEECCCEEECCCCC---THHHHTBTTTEESCHHHHG------
T ss_pred HHHcCCEEEEee-EEEEEeCCcEEEEEeCCCCEEEeCEEEECCCCCccCCCC---CchHhccCCceEEeeccch------
Confidence 667899999985 8888873 2456 67778899999999999999887766 4422 123332222111
Q ss_pred HHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCC
Q 011700 156 VMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSN 235 (479)
Q Consensus 156 ~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~ 235 (479)
.+ ..+++++|||+|++|+|+|..|.+.+.+|+++++.+.+.. .+.+. .+.+++.||++++++.+.+++.+
T Consensus 151 ~~--~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~---~~~~~---~~~~~~~gV~v~~~~~v~~i~~~-- 220 (335)
T 2a87_A 151 FF--FRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRA---SKIML---DRARNNDKIRFLTNHTVVAVDGD-- 220 (335)
T ss_dssp GG--GTTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSS---CTTHH---HHHHHCTTEEEECSEEEEEEECS--
T ss_pred hh--cCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCc---cHHHH---HHHhccCCcEEEeCceeEEEecC--
Confidence 11 2579999999999999999999999999999999887643 22222 23456789999999999999863
Q ss_pred CcEEEEEeC---CC--cEEeccEEEEecCCCCChhhhhccccc-ccCcEEEcCc-ccCCCCCeEEEeeeccccccccCce
Q 011700 236 GKVVAVNLR---DG--NRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGR-LQSSNSSVYAVGDVAAFPLKLLGET 308 (479)
Q Consensus 236 g~v~~v~~~---~g--~~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd~~-l~t~~~~IyA~GD~~~~~~~~~g~~ 308 (479)
+.+..+.+. +| +++++|.|++++|++|++++++.++.. ++|+|.||++ ++|+.|+|||+|||+..+.
T Consensus 221 ~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~~~t~~~~iya~GD~~~~~~------ 294 (335)
T 2a87_A 221 TTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVREAIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVDRTY------ 294 (335)
T ss_dssp SSCCEEEEEEETTSCCEEECCSCEEECSCEEECCTTTBTTBCBCTTSCBCCSTTSSBCSSTTEEECGGGTCCSC------
T ss_pred CcEeEEEEEEcCCCceEEeecCEEEEccCCccChhHhhcccccCCCccEEeCCCCCccCCCCEEEeeecCCccH------
Confidence 232234443 44 579999999999999999988766665 5789999986 6899999999999998642
Q ss_pred eecccHHHHHHHHHHHHHHHcC
Q 011700 309 RRLEHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 309 ~~~~~~~~A~~~g~~aa~~i~~ 330 (479)
..+..|..+|+.||.+|..
T Consensus 295 ---~~~~~A~~~g~~aA~~i~~ 313 (335)
T 2a87_A 295 ---RQAVTAAGSGCAAAIDAER 313 (335)
T ss_dssp ---CCHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhHHHHHHHHHH
Confidence 4577889999999998863
No 73
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=100.00 E-value=2.2e-35 Score=299.14 Aligned_cols=290 Identities=19% Similarity=0.243 Sum_probs=226.9
Q ss_pred CeEEEECCchHHHHHHHHHHH---cCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHH
Q 011700 5 FVYVIVGGGVAAGYAALEFTK---RGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWY 81 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~---~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (479)
+||||||||+||+++|.+|++ .|.+ |+|||+++...|. +.+..... .... ..+....+.+++
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~---V~vie~~~~~~~~-~~~~~~~~---~~~~--------~~~~~~~~~~~~ 66 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKAD---VKVINKSRFSYFR-PALPHVAI---GVRD--------VDELKVDLSEAL 66 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSE---EEEEESSSEEEEC-CSSCCCCS---SCCC--------CCCEEEEHHHHT
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCe---EEEEeCCCCceec-cchhhccc---CCcC--------HHHHHHHHHHHH
Confidence 689999999999999999999 6665 9999999854332 22221000 0000 011123455667
Q ss_pred HHcCcEEEeCceEEEEECCCcEEEeCCCc----EEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHH
Q 011700 82 NEHGIELVLGTRVKSADVRRKTLVTATGE----TISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVM 157 (479)
Q Consensus 82 ~~~gv~~~~~~~v~~i~~~~~~v~~~~g~----~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l 157 (479)
++.+++++.+ +|..++.+.+.+.+.+++ ++.||+||+|||++|..|++ +|.+. ..+...+..++..+.+.+
T Consensus 67 ~~~gv~~~~~-~v~~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~~~i---pG~~~-~~~~~~~~~~~~~~~~~l 141 (409)
T 3h8l_A 67 PEKGIQFQEG-TVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELV---KGWDK-YGYSVCEPEFATKLREKL 141 (409)
T ss_dssp GGGTCEEEEC-EEEEEETTTTEEEEECTTSCEEEEECSEEEECCCCEECGGGS---BTHHH-HCEESSSTTHHHHHHHHH
T ss_pred hhCCeEEEEe-eEEEEeCCCCEEEEccCCcccceeeCCEEEECCCCCcCccCC---CChhh-cCcCcCCHHHHHHHHHHH
Confidence 7889999988 999999999999887765 49999999999999988776 55432 456677788888888877
Q ss_pred hcCCCCCEEEECCCh-------------------------HHHHHHH----HHhhCC----CeEEEEeecCccccccCCH
Q 011700 158 KSCSGGNAVVIGGGY-------------------------IGMECAA----SLVINK----INVTMVFPEAHCMARLFTP 204 (479)
Q Consensus 158 ~~~~~~~vvVIGgG~-------------------------~g~E~A~----~l~~~g----~~Vtlv~~~~~~l~~~~~~ 204 (479)
.... ++++|||+|+ .++|+|. .+.+.| .+|+++++.+ +++. +++
T Consensus 142 ~~~~-~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~-~l~~-~~~ 218 (409)
T 3h8l_A 142 ESFQ-GGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGE-YLSD-LSP 218 (409)
T ss_dssp HHCC-SEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEEEECSSS-SSTT-BCH
T ss_pred HHhc-CCeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCc-cccc-cCH
Confidence 7643 5667999992 4677774 455677 4899999988 6664 789
Q ss_pred HHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhhc--ccccccCcEEEcC
Q 011700 205 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG--QLTLEKGGIKVTG 282 (479)
Q Consensus 205 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~--~~~~~~g~i~Vd~ 282 (479)
++.+.+.+.++++||+++++++|++++. + .+.+.+|+++++|.|++++|++|+..+.+. .+..++|+|.||+
T Consensus 219 ~~~~~~~~~l~~~gV~~~~~~~v~~i~~--~----~v~~~~g~~~~~D~vi~a~G~~~~~~l~~~~~~l~~~~G~i~vd~ 292 (409)
T 3h8l_A 219 NSRKAVASIYNQLGIKLVHNFKIKEIRE--H----EIVDEKGNTIPADITILLPPYTGNPALKNSTPDLVDDGGFIPTDL 292 (409)
T ss_dssp HHHHHHHHHHHHHTCEEECSCCEEEECS--S----EEEETTSCEEECSEEEEECCEECCHHHHTSCGGGSCTTSCBCBBT
T ss_pred HHHHHHHHHHHHCCCEEEcCCceEEECC--C----eEEECCCCEEeeeEEEECCCCCccHHHHhccccCcCCCCCEEeCc
Confidence 9999999999999999999999999964 2 377889999999999999999999766555 3444678899999
Q ss_pred cccC-CCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCC
Q 011700 283 RLQS-SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP 331 (479)
Q Consensus 283 ~l~t-~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~ 331 (479)
++|| ++|||||+|||+..+.+ ..+..|..||++||+||.+.
T Consensus 293 ~~~~~~~~~vfa~GD~~~~~~~--------~~~~~A~~q~~~aa~~i~~~ 334 (409)
T 3h8l_A 293 NMVSIKYDNVYAVGDANSMTVP--------KLGYLAVMTGRIAAQHLANR 334 (409)
T ss_dssp TSBBSSCTTEEECGGGBTTCCS--------CCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCEEEeehhccCCCC--------cHHHHHHHHHHHHHHHHHHH
Confidence 9999 99999999999986433 56788999999999999754
No 74
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=100.00 E-value=2.8e-34 Score=286.66 Aligned_cols=303 Identities=15% Similarity=0.206 Sum_probs=207.4
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCC-CCCcEEEEcCCCCCC-C-CCCcccccccCCCCC---CCCCCcc----------
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGV-PPGELCIISEEPVAP-Y-ERPALSKGYLLPEAP---ARLPSFH---------- 66 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~-~~~~V~lie~~~~~~-~-~~~~l~~~~~~~~~~---~~~~~~~---------- 66 (479)
+++||+|||||++|+++|.+|++.|. + |+|||+++... + ..+... .++.+... ..++.+.
T Consensus 3 ~~~~vvIIGaG~aGl~aA~~l~~~g~~~---v~lie~~~~Gg~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 78 (369)
T 3d1c_A 3 QHHKVAIIGAGAAGIGMAITLKDFGITD---VIILEKGTVGHSFKHWPKST-RTITPSFTSNGFGMPDMNAISMDTSPAF 78 (369)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCC---EEEECSSSTTHHHHTSCTTC-BCSSCCCCCGGGTCCCTTCSSTTCCHHH
T ss_pred ccCcEEEECcCHHHHHHHHHHHHcCCCc---EEEEecCCCCCccccCcccc-cccCcchhcccCCchhhhhccccccccc
Confidence 46899999999999999999999887 5 99999986100 0 000000 00000000 0000000
Q ss_pred -c----ccCCcccCCCHhHHHHcCcEEEeCceEEEEECCC--cEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCC
Q 011700 67 -T----CVGANEERLTPKWYNEHGIELVLGTRVKSADVRR--KTLVTATGETISYKILIIATGARALKLEEFGLSGSDAE 139 (479)
Q Consensus 67 -~----~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~--~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~ 139 (479)
. .........+..++++.+++++.+++|++++.++ ..|.+.++ ++.||+||+|||+.+. |.+ |+ .
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~-p~i---p~---~ 150 (369)
T 3d1c_A 79 TFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYNF-PKK---PF---K 150 (369)
T ss_dssp HHCCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTTS-BCC---CS---S
T ss_pred cccccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCCc-cCC---CC---C
Confidence 0 0000000112334567899999998999998763 46666665 6899999999999865 444 44 2
Q ss_pred CeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc------cCCHHHHHHHHHH
Q 011700 140 NVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------LFTPKIASYYEEY 213 (479)
Q Consensus 140 ~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------~~~~~~~~~~~~~ 213 (479)
.+++...+.+. ...++++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. .+++...+.+.+.
T Consensus 151 ~~~~~~~~~~~-------~~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~ 223 (369)
T 3d1c_A 151 YGIHYSEIEDF-------DNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNV 223 (369)
T ss_dssp SCEEGGGCSCG-------GGSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CTTSCCHHHHHHHHHH
T ss_pred ceechhhcCCh-------hhcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHH
Confidence 34443332221 1225679999999999999999999999999999999887642 1467788899999
Q ss_pred HHhCC-cEEEcCCceEEEEEcCCCcEEEEEeCCCcEEe-ccEEEEecCCCCChhhhhc-ccccccCcEEEcCc-ccCCCC
Q 011700 214 YKSKG-VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLP-TDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGR-LQSSNS 289 (479)
Q Consensus 214 l~~~G-V~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~-~D~Vi~a~G~~p~~~l~~~-~~~~~~g~i~Vd~~-l~t~~~ 289 (479)
+++.| |++++++.|.+++.+ ++. ..+.+.+|+++. +|.|++++|++|+++++.. .+..++|+|.||++ ++|++|
T Consensus 224 l~~~g~v~~~~~~~v~~i~~~-~~~-~~v~~~~g~~~~~~d~vi~a~G~~~~~~~~~~~~~~~~~g~i~v~~~~~~t~~~ 301 (369)
T 3d1c_A 224 IKQGARIEMNVHYTVKDIDFN-NGQ-YHISFDSGQSVHTPHEPILATGFDATKNPIVQQLFVTTNQDIKLTTHDESTRYP 301 (369)
T ss_dssp HHTTCCEEEECSCCEEEEEEE-TTE-EEEEESSSCCEEESSCCEECCCBCGGGSHHHHHHSCCTTSCCCBCTTSBBSSST
T ss_pred HhhCCcEEEecCcEEEEEEec-CCc-eEEEecCCeEeccCCceEEeeccCCccchhhhhhccCCCCCEEechhhcccCCC
Confidence 99997 999999999999752 232 357788888775 5999999999999965543 34445677999985 778999
Q ss_pred CeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCC
Q 011700 290 SVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD 332 (479)
Q Consensus 290 ~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~ 332 (479)
+|||+|||+..+.... ..+..+..||+.+|++|.+..
T Consensus 302 ~v~a~GD~~~~~~~~~------~~~~~~~~~a~~~a~~l~~~~ 338 (369)
T 3d1c_A 302 NIFMIGATVENDNAKL------CYIYKFRARFAVLAHLLTQRE 338 (369)
T ss_dssp TEEECSTTCCCSSCCC------CSHHHHGGGHHHHHHHHHHHT
T ss_pred CeEEeccccccCCeeE------EEEehhhHHHHHHHHHHhccc
Confidence 9999999998754322 345567888999999998654
No 75
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=100.00 E-value=2.7e-34 Score=284.84 Aligned_cols=299 Identities=18% Similarity=0.240 Sum_probs=198.4
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCcccccccCCCCCCCCCCcccccC-------Ccc
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YERPALSKGYLLPEAPARLPSFHTCVG-------ANE 73 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~ 73 (479)
+++||+|||||++|+++|..|+++|++ |+|||+++... +........+..+.....++.+..... ...
T Consensus 2 ~~~~vvIIG~G~aGl~~A~~l~~~g~~---v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (357)
T 4a9w_A 2 DSVDVVVIGGGQSGLSAGYFLRRSGLS---YVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEV 78 (357)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHSSCC---EEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHH
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCC---EEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHH
Confidence 458999999999999999999999887 99999986421 000000000000111111121111100 011
Q ss_pred cCCCHhHHHHcCcEEEeCceEEEEECCCcE---EEeCCCcEEEeceEEeecCC--CcccccccCCCCCCC--CCeEEecC
Q 011700 74 ERLTPKWYNEHGIELVLGTRVKSADVRRKT---LVTATGETISYKILIIATGA--RALKLEEFGLSGSDA--ENVCYLRD 146 (479)
Q Consensus 74 ~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~---v~~~~g~~~~~d~lviAtG~--~~~~~~~~g~~g~~~--~~v~~~~~ 146 (479)
...+.+++++.+++++.+++|.+++.+++. +.+.++ ++.||+||+|||. .|..|++ +|.+. ...++...
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~~~~~~~---~g~~~~~~~~~~~~~ 154 (357)
T 4a9w_A 79 LAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWGEAYTPEY---QGLESFAGIQLHSAH 154 (357)
T ss_dssp HHHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGGGBCCCCC---TTGGGCCSEEEEGGG
T ss_pred HHHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCCCCCCCCC---CCccccCCcEEEecc
Confidence 122344556789999999999999887765 555565 8999999999995 5656666 44321 11222222
Q ss_pred HHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeec-CccccccC-CHHHHHHHHHHHH---------
Q 011700 147 LADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE-AHCMARLF-TPKIASYYEEYYK--------- 215 (479)
Q Consensus 147 ~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~~l~~~~-~~~~~~~~~~~l~--------- 215 (479)
+.+.. ...+++++|||+|++|+|+|..|.+.+ +|+++.+. +.+++..+ ...+.+.+.+.++
T Consensus 155 ~~~~~-------~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (357)
T 4a9w_A 155 YSTPA-------PFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPD 226 (357)
T ss_dssp CCCSG-------GGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC---------------
T ss_pred CCChh-------hcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHHHHHHhccccccCCC
Confidence 21111 125799999999999999999999998 69999988 55555432 2344333333332
Q ss_pred -------------------hCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhhc-cccccc
Q 011700 216 -------------------SKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTLEK 275 (479)
Q Consensus 216 -------------------~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~~~ 275 (479)
+.|+ +..+..+.+++. + .+.+.+|+++++|.|++++|++|++++++. ++..++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~v~~~~~--~----~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~ 299 (357)
T 4a9w_A 227 LPPGGFGDIVMVPPVLDARARGV-LAAVPPPARFSP--T----GMQWADGTERAFDAVIWCTGFRPALSHLKGLDLVTPQ 299 (357)
T ss_dssp -------CBCCCHHHHHHHHTTC-CCEECCCSEEET--T----EEECTTSCEEECSEEEECCCBCCCCGGGTTTTCBCTT
T ss_pred cccccccCcccChhHHHHHhcCc-eEEecCcceEeC--C----eeEECCCCEecCCEEEECCCcCCCCcccCcccccCCC
Confidence 3444 445556667653 2 478899999999999999999999888765 555567
Q ss_pred CcEEEcCc--ccCCCCCeEEEe--eeccccccccCceeecccHHHHHHHHHHHHHHHcCCC
Q 011700 276 GGIKVTGR--LQSSNSSVYAVG--DVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD 332 (479)
Q Consensus 276 g~i~Vd~~--l~t~~~~IyA~G--D~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~ 332 (479)
|+|.||++ ++|+.|+|||+| ||+.... ..+..|..||+.+|.+|....
T Consensus 300 G~i~vd~~~l~~t~~~~vya~Gd~d~~~~~~---------~~~~~A~~~g~~~a~~i~~~l 351 (357)
T 4a9w_A 300 GQVEVDGSGLRALAVPSVWLLGYGDWNGMAS---------ATLIGVTRYAREAVRQVTAYC 351 (357)
T ss_dssp SCBCBCTTSCBBSSCTTEEECSSCGGGSTTC---------SSTTTHHHHHHHHHHHHHHHT
T ss_pred CCccccCCcccCCCCCCeEEeccccccccch---------hhhhhhHHHHHHHHHHHHHHH
Confidence 89999999 999999999999 5555221 334568899999999987543
No 76
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=100.00 E-value=2.1e-34 Score=293.76 Aligned_cols=302 Identities=17% Similarity=0.185 Sum_probs=215.2
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH 84 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (479)
+||||||||+||+++|.+|++.+ +..+|+|||+++.+.|. +.+.. .... ... .......+.+++++.
T Consensus 3 ~~vvIIGgG~aGl~aA~~L~~~~-~g~~Vtlie~~~~~~~~-~~~~~-~~~g--~~~--------~~~~~~~~~~~~~~~ 69 (430)
T 3h28_A 3 KHVVVIGGGVGGIATAYNLRNLM-PDLKITLISDRPYFGFT-PAFPH-LAMG--WRK--------FEDISVPLAPLLPKF 69 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHC-TTCEEEEECSSSEEECG-GGHHH-HHHT--CSC--------GGGSEEESTTTGGGG
T ss_pred CCEEEECccHHHHHHHHHHHcCC-CCCeEEEECCCCCCCcC-CCcch-hccC--ccC--------HHHHHHHHHHHHHhc
Confidence 79999999999999999999932 12349999999765442 21110 0000 000 011123345566778
Q ss_pred CcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcC-CCC
Q 011700 85 GIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSC-SGG 163 (479)
Q Consensus 85 gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~-~~~ 163 (479)
+++++.+ ++..++++.+.+.+.+++++.||+||+|||++|..|.. .. ........+..++.++.+.++.. .++
T Consensus 70 gv~~~~~-~v~~id~~~~~v~~~~g~~i~~d~liiAtG~~~~~pg~---~~--~g~~~~~~~~~~a~~~~~~~~~~~~~~ 143 (430)
T 3h28_A 70 NIEFINE-KAESIDPDANTVTTQSGKKIEYDYLVIATGPKLVFGAE---GQ--EENSTSICTAEHALETQKKLQELYANP 143 (430)
T ss_dssp TEEEECS-CEEEEETTTTEEEETTCCEEECSEEEECCCCEEECCSB---TH--HHHSCCCSSHHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEE-EEEEEECCCCEEEECCCcEEECCEEEEcCCcccccCCC---CC--cCCccCcCCHHHHHHHHHHHHHHHhcC
Confidence 9999986 89999999999999999899999999999999765422 11 01223455667776666544432 235
Q ss_pred CEEEECCChHH------HHHH----HHHhhCC----CeEEEEeecCcccccc--CCHHHHHHHHHHHHhCCcEEEcCCce
Q 011700 164 NAVVIGGGYIG------MECA----ASLVINK----INVTMVFPEAHCMARL--FTPKIASYYEEYYKSKGVKFVKGTVL 227 (479)
Q Consensus 164 ~vvVIGgG~~g------~E~A----~~l~~~g----~~Vtlv~~~~~~l~~~--~~~~~~~~~~~~l~~~GV~i~~~~~v 227 (479)
+++|||+|+.+ +|+| ..+.+.| .+|+++++.+.+.... -.++..+.+.+.++++||++++++.|
T Consensus 144 ~~vVVGgG~~~~~~G~~~E~a~~la~~l~~~g~~~~~~V~~v~~~~~~~~~~l~~~~~~~~~l~~~l~~~GV~i~~~~~v 223 (430)
T 3h28_A 144 GPVVIGAIPGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAV 223 (430)
T ss_dssp CCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSCEE
T ss_pred CeEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCccceEEEEecCCccccccccCcchHHHHHHHHHHHHCCCEEEeCCEE
Confidence 67888987543 7777 4555667 5899999988763210 12357888899999999999999999
Q ss_pred EEEEEcCCCcEEEEEeCC----CcEEeccEEEEecCCCCChhhhhc--ccccccC-cEEEcCcccC-CCCCeEEEeeecc
Q 011700 228 SSFDVDSNGKVVAVNLRD----GNRLPTDMVVVGIGIRPNTSLFEG--QLTLEKG-GIKVTGRLQS-SNSSVYAVGDVAA 299 (479)
Q Consensus 228 ~~i~~~~~g~v~~v~~~~----g~~i~~D~Vi~a~G~~p~~~l~~~--~~~~~~g-~i~Vd~~l~t-~~~~IyA~GD~~~ 299 (479)
++++. ++ +.+.+ ++++++|.|++++|++|+..+.+. ++..++| +|.||+++|| ++|||||+|||+.
T Consensus 224 ~~v~~--~~----v~~~~~~~~g~~i~~D~vv~a~G~~~~~~l~~~~~gl~~~~G~~i~Vd~~l~t~~~~~Ifa~GD~~~ 297 (430)
T 3h28_A 224 KAIEP--DK----VIYEDLNGNTHEVPAKFTMFMPSFQGPEVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTA 297 (430)
T ss_dssp EEECS--SE----EEEECTTSCEEEEECSEEEEECEEECCHHHHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECSTTBC
T ss_pred EEEeC--Ce----EEEEecCCCceEEeeeEEEECCCCccchhHhhccccCcCCCCCEEecCccccCCCCCCEEEEEeeec
Confidence 99964 22 34444 678999999999999998776653 5644678 8999999999 9999999999998
Q ss_pred ccccccCcee---ecccHHHHHHHHHHHHHHHcCCC
Q 011700 300 FPLKLLGETR---RLEHVDSARKSAKHAVAAIMEPD 332 (479)
Q Consensus 300 ~~~~~~g~~~---~~~~~~~A~~~g~~aa~~i~~~~ 332 (479)
.+.. .+.+. ...++..|..||+.+|+||....
T Consensus 298 ~~~~-~~~~~~~~~pk~~~~A~~~g~~aa~ni~~~l 332 (430)
T 3h28_A 298 IPPI-EKTPIPTGVPKTGMMIEQMAMAVAHNIVNDI 332 (430)
T ss_dssp CCCS-SCCSSCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCc-cCCCCCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 7642 11111 12578889999999999997543
No 77
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=100.00 E-value=4.5e-33 Score=284.50 Aligned_cols=282 Identities=20% Similarity=0.285 Sum_probs=198.6
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
.+||+||||||||++||..|++.|++ |+|||+.+... +.+. ..+|.+.. .........+++++
T Consensus 122 ~~~V~IIGgGpAGl~aA~~L~~~G~~---V~v~e~~~~~G--------G~l~----~gip~~~~--~~~~~~~~~~~l~~ 184 (456)
T 2vdc_G 122 GLSVGVIGAGPAGLAAAEELRAKGYE---VHVYDRYDRMG--------GLLV----YGIPGFKL--EKSVVERRVKLLAD 184 (456)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHHTCC---EEEECSSSSCS--------THHH----HTSCTTTS--CHHHHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCCCC--------Ceee----ecCCCccC--CHHHHHHHHHHHHH
Confidence 57999999999999999999999987 99999986421 1110 01122211 00111233466788
Q ss_pred cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCC-cccccccCCCCCCCCCeEEecCHHHHHHHHH--H----
Q 011700 84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGAR-ALKLEEFGLSGSDAENVCYLRDLADANRLVN--V---- 156 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~-~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~--~---- 156 (479)
.|++++.++.+. +.+.+.+. .+.||+||||||+. |+.+++ +|.+.+++++..++........ .
T Consensus 185 ~gv~~~~~~~v~------~~v~~~~~-~~~~d~vvlAtG~~~~~~~~i---pG~~~~gv~~a~~~l~~~~~~~~~~~~~~ 254 (456)
T 2vdc_G 185 AGVIYHPNFEVG------RDASLPEL-RRKHVAVLVATGVYKARDIKA---PGSGLGNIVAALDYLTTSNKVSLGDTVEA 254 (456)
T ss_dssp TTCEEETTCCBT------TTBCHHHH-HSSCSEEEECCCCCEECCTTC---SCCTTTTEEEHHHHHHHHHHHHCTTTCSS
T ss_pred CCcEEEeCCEec------cEEEhhHh-HhhCCEEEEecCCCCCCCCCC---CCCcCCCcEEHHHHHHHhhhhhccccccc
Confidence 899999986542 22223222 25799999999997 555555 7777677776443322111110 0
Q ss_pred ----HhcCCCCCEEEECCChHHHHHHHHHhhCCC-eEEEEeecCcc-ccccCCHHHHHHHHHHHHhCCcEEEcCCceEEE
Q 011700 157 ----MKSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHC-MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSF 230 (479)
Q Consensus 157 ----l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i 230 (479)
.....+++|+|||+|++|+|+|..+.+.|. +||++.|++.. ++. .+.+ .+.+++.||++++++.+.++
T Consensus 255 ~~~g~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~-~~~e-----~~~~~~~Gv~~~~~~~~~~i 328 (456)
T 2vdc_G 255 YENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPG-SQRE-----VAHAEEEGVEFIWQAAPEGF 328 (456)
T ss_dssp CCTTCSCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCSTTCSS-CHHH-----HHHHHHTTCEEECCSSSCCE
T ss_pred ccccccccCCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCccCCCC-CHHH-----HHHHHHCCCEEEeCCCceEE
Confidence 011357899999999999999999999997 59999998875 553 3333 24567789999999999998
Q ss_pred EEcCCCcEEEEEe---------C---------CC--cEEeccEEEEecCCCCChh--hhh-ccccc-ccCcEEEcCc-cc
Q 011700 231 DVDSNGKVVAVNL---------R---------DG--NRLPTDMVVVGIGIRPNTS--LFE-GQLTL-EKGGIKVTGR-LQ 285 (479)
Q Consensus 231 ~~~~~g~v~~v~~---------~---------~g--~~i~~D~Vi~a~G~~p~~~--l~~-~~~~~-~~g~i~Vd~~-l~ 285 (479)
.. ++++..+.+ . +| +++++|.||+|+|++|++. +++ .++.. ++|+|.||++ +|
T Consensus 329 ~~--~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~~~gl~~~~~G~i~vd~~~~~ 406 (456)
T 2vdc_G 329 TG--DTVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKM 406 (456)
T ss_dssp EE--EEEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHSTTSCBCTTSSBCCCTTTCB
T ss_pred eC--CCcEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCCCCCcchhhcccCCeeECCCCCEEECCCCCc
Confidence 75 343322221 1 23 4799999999999999875 444 35655 5789999997 99
Q ss_pred CCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700 286 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 286 t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~ 330 (479)
|+.|+|||+|||+..+ .++..|+.+|+.||.+|..
T Consensus 407 Ts~~~VfA~GD~~~g~----------~~v~~A~~~G~~aA~~i~~ 441 (456)
T 2vdc_G 407 TNMDGVFAAGDIVRGA----------SLVVWAIRDGRDAAEGIHA 441 (456)
T ss_dssp CSSTTEEECGGGGSSC----------CSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEeccccCCc----------hHHHHHHHHHHHHHHHHHH
Confidence 9999999999998765 4578899999999999864
No 78
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=99.98 E-value=3.1e-32 Score=303.89 Aligned_cols=311 Identities=19% Similarity=0.283 Sum_probs=214.2
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
.+||+||||||||++||.+|+++|++ +|+|||+++.... .+. ..+|.+... ........+++++
T Consensus 187 ~~~VvVIGgGpAGl~aA~~L~~~G~~--~Vtv~E~~~~~GG--------~~~----~~ip~~~~~--~~~~~~~~~~~~~ 250 (1025)
T 1gte_A 187 SAKIALLGAGPASISCASFLARLGYS--DITIFEKQEYVGG--------LST----SEIPQFRLP--YDVVNFEIELMKD 250 (1025)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCC--CEEEEESSSSCST--------HHH----HTSCTTTSC--HHHHHHHHHHHHT
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCC--cEEEEeCCCCCCc--------ccc----ccCCcccCC--HHHHHHHHHHHHH
Confidence 47999999999999999999999983 3999999853211 110 011221110 0011122456778
Q ss_pred cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCC-CcccccccCCCCCC-CCCeEEecCHHHHHHHHHHHh---
Q 011700 84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGA-RALKLEEFGLSGSD-AENVCYLRDLADANRLVNVMK--- 158 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~-~~~~~~~~g~~g~~-~~~v~~~~~~~~~~~l~~~l~--- 158 (479)
.|++++.++.+. .+.+.+.+++++.||+||||||+ .|+.++++ +|.+ .+++++..++... +.+...
T Consensus 251 ~gv~~~~~~~v~-----~~~v~~~~~~~~~~d~vvlAtGa~~p~~l~~~--~G~~~~~gv~~a~~~L~~--~~~~~~~~~ 321 (1025)
T 1gte_A 251 LGVKIICGKSLS-----ENEITLNTLKEEGYKAAFIGIGLPEPKTDDIF--QGLTQDQGFYTSKDFLPL--VAKSSKAGM 321 (1025)
T ss_dssp TTCEEEESCCBS-----TTSBCHHHHHHTTCCEEEECCCCCEECCCGGG--TTCCTTTTEEEHHHHHHH--HHHHHCBTT
T ss_pred CCcEEEcccEec-----cceEEhhhcCccCCCEEEEecCCCCCCCCCCC--CCCCCCCCEEEhHHHHHH--HHhhccccc
Confidence 899999987652 13344445555789999999999 58776652 3332 3567654432211 111100
Q ss_pred -------cCCCCCEEEECCChHHHHHHHHHhhCCC-eEEEEeecCc-cccccCCHHHHHHHHHHHHhCCcEEEcCCceEE
Q 011700 159 -------SCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAH-CMARLFTPKIASYYEEYYKSKGVKFVKGTVLSS 229 (479)
Q Consensus 159 -------~~~~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~-~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~ 229 (479)
...+++|+|||+|++|+|+|..+.++|. +||++++.++ .++. +++++ +.+++.||++++++.+.+
T Consensus 322 ~~~~~~~~~~~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~~-~~~e~-----~~~~~~Gv~~~~~~~~~~ 395 (1025)
T 1gte_A 322 CACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRA-VPEEV-----ELAKEEKCEFLPFLSPRK 395 (1025)
T ss_dssp BSCCCCCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCS-CHHHH-----HHHHHTTCEEECSEEEEE
T ss_pred ccccccccccCCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecChhhCCC-CHHHH-----HHHHHcCCEEEeCCCceE
Confidence 1135799999999999999999999996 8999999884 4443 45544 356778999999999999
Q ss_pred EEEcCCCcEEEEEeC------CC---------cEEeccEEEEecCCCCC-hhhhhc--cccc-ccCcEEEcC-cccCCCC
Q 011700 230 FDVDSNGKVVAVNLR------DG---------NRLPTDMVVVGIGIRPN-TSLFEG--QLTL-EKGGIKVTG-RLQSSNS 289 (479)
Q Consensus 230 i~~~~~g~v~~v~~~------~g---------~~i~~D~Vi~a~G~~p~-~~l~~~--~~~~-~~g~i~Vd~-~l~t~~~ 289 (479)
+.. +++++..+++. +| +++++|.|++|+|++|+ ..+... ++.. ++|+|.||+ ++||+.|
T Consensus 396 i~~-~~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl~~~~~G~I~vd~~~~~Ts~~ 474 (1025)
T 1gte_A 396 VIV-KGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEP 474 (1025)
T ss_dssp EEE-ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSST
T ss_pred EEc-cCCeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCCCchhhhhcccCceECCCCCEEECCCCCccCCC
Confidence 986 46666656542 22 36899999999999864 556543 5666 468899997 8999999
Q ss_pred CeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCC------CCCCCCCCCCeEEE--eecCcceEeec
Q 011700 290 SVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP------DKTDKFDYLPFFYS--RVFTLSWQFYG 356 (479)
Q Consensus 290 ~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~------~~~~~~~~~p~~~~--~~~~~~~~~~G 356 (479)
+|||+|||+..+ ..+..|+.||+.||.+|.+. .....++.+|++|+ ...+++....|
T Consensus 475 ~VfA~GD~~~~~----------~~~~~A~~~G~~aA~~i~~~L~~~~~~~~~~~~~~p~~~~ev~~v~ls~~~~G 539 (1025)
T 1gte_A 475 WVFAGGDIVGMA----------NTTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYTPVDLVDISVEMAG 539 (1025)
T ss_dssp TEEECSGGGCSC----------CCHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCCBCCCCCGGGGCCCCEEETT
T ss_pred CEEEeCCCCCCc----------hHHHHHHHHHHHHHHHHHHHHHhccCCCcccCcCccccccccccccceeeecc
Confidence 999999999864 35678999999999999741 11124567888776 33444444444
No 79
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=99.98 E-value=3.3e-32 Score=301.64 Aligned_cols=283 Identities=18% Similarity=0.178 Sum_probs=206.5
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
++|||||||||||++||.+|++.|++ |+|||+++... . .+.. . ....++... .........+.+.+
T Consensus 128 ~~dVvVIGaGpAGl~AA~~la~~G~~---V~lie~~~~~G-G-~~~~-----~-~k~~i~~~~---~~~~~~~~~~~l~~ 193 (965)
T 2gag_A 128 HTDVLVVGAGPAGLAAAREASRSGAR---VMLLDERAEAG-G-TLLD-----T-AGEQIDGMD---SSAWIEQVTSELAE 193 (965)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSS-G-GGGG-----S-SCCEETTEE---HHHHHHHHHHHHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCc---EEEEeCCCCCC-c-eecc-----C-CccccCCCC---HHHHHHHHHHHHhh
Confidence 57999999999999999999999986 99999986421 1 0110 0 000011100 00000111223444
Q ss_pred -cCcEEEeCceEEEEECCCcEEEe-----------------CCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEec
Q 011700 84 -HGIELVLGTRVKSADVRRKTLVT-----------------ATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLR 145 (479)
Q Consensus 84 -~gv~~~~~~~v~~i~~~~~~v~~-----------------~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~ 145 (479)
.+++++.+++|..++.++....+ .++.++.||+||||||+.|+.|++ ||.+.+++++..
T Consensus 194 ~~~v~~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~~i---pG~~~~gv~~~~ 270 (965)
T 2gag_A 194 AEETTHLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERPIVF---ENNDRPGIMLAG 270 (965)
T ss_dssp STTEEEESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECCCCC---BTCCSTTEEEHH
T ss_pred cCCcEEEeCCEEEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCCCCC---CCCCCCCEEEhH
Confidence 48999999899998866532211 112368999999999999988876 777777887755
Q ss_pred CHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCC
Q 011700 146 DLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 225 (479)
Q Consensus 146 ~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~ 225 (479)
++. .+.+.....++++++|||+|++|+|+|..|.+.|.+|+++++.+++++ . .+.+++.||++++++
T Consensus 271 ~~~---~~l~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~-----~-----~~~l~~~GV~v~~~~ 337 (965)
T 2gag_A 271 AVR---SYLNRYGVRAGARIAVATTNDSAYELVRELAATGGVVAVIDARSSISA-----A-----AAQAVADGVQVISGS 337 (965)
T ss_dssp HHH---HHHHTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCH-----H-----HHHHHHTTCCEEETE
T ss_pred HHH---HHHHhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccch-----h-----HHHHHhCCeEEEeCC
Confidence 432 222222223568999999999999999999999999999999887643 1 456788999999999
Q ss_pred ceEEEEEcCCCcEEEEEeCC-------C--cEEeccEEEEecCCCCChhhhhcccccccCcEEEcCccc-----CCCCCe
Q 011700 226 VLSSFDVDSNGKVVAVNLRD-------G--NRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQ-----SSNSSV 291 (479)
Q Consensus 226 ~v~~i~~~~~g~v~~v~~~~-------g--~~i~~D~Vi~a~G~~p~~~l~~~~~~~~~g~i~Vd~~l~-----t~~~~I 291 (479)
.+.+++.++++++..+.+.+ | +++++|.|++++|++|+++++.. .+++|.||++++ |++|+|
T Consensus 338 ~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~----~~g~i~vd~~~~~~v~~ts~p~I 413 (965)
T 2gag_A 338 VVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQ----RQGKLDWDTTIHAFVPADAVANQ 413 (965)
T ss_dssp EEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHHH----TTCCEEEETTTTEEEECSCCTTE
T ss_pred EeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHHHh----CCCcEEEcCcccccccCCCCCCE
Confidence 99999863245555666654 4 67999999999999999987653 257899999988 899999
Q ss_pred EEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCC
Q 011700 292 YAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP 331 (479)
Q Consensus 292 yA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~ 331 (479)
||+|||++.+. ...|..||+.||.+|.+.
T Consensus 414 yAaGD~a~~~~-----------l~~A~~~G~~aA~~i~~~ 442 (965)
T 2gag_A 414 HLAGAMTGRLD-----------TASALSTGAATGAAAATA 442 (965)
T ss_dssp EECGGGGTCCS-----------HHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCchh-----------HHHHHHHHHHHHHHHHHH
Confidence 99999998642 347899999999999753
No 80
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=99.97 E-value=1.7e-32 Score=280.85 Aligned_cols=293 Identities=15% Similarity=0.176 Sum_probs=200.5
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN 82 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (479)
.++||+||||||||+++|..|+++| +..+|+|||+++.. |.. +..+. .|.+.. .......+.++++
T Consensus 5 ~~~~vvIIG~G~aGl~aA~~l~~~g-~~~~V~vie~~~~~-gg~--~~~g~--------~p~~~~--~~~~~~~~~~~~~ 70 (460)
T 1cjc_A 5 QTPQICVVGSGPAGFYTAQHLLKHH-SRAHVDIYEKQLVP-FGL--VRFGV--------APDHPE--VKNVINTFTQTAR 70 (460)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHC-SSCEEEEECSSSSS-CTH--HHHTS--------CTTCGG--GGGHHHHHHHHHT
T ss_pred CCceEEEECcCHHHHHHHHHHHhcC-CCCCEEEEeCCCcC-Cce--eeccc--------CCCCcc--HHHHHHHHHHHHH
Confidence 3589999999999999999999987 23459999998743 321 11110 111110 0111122345666
Q ss_pred HcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCc-ccccccCCCCCCCCCeEEecCHHHHHHHH---HHHh
Q 011700 83 EHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARA-LKLEEFGLSGSDAENVCYLRDLADANRLV---NVMK 158 (479)
Q Consensus 83 ~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~-~~~~~~g~~g~~~~~v~~~~~~~~~~~l~---~~l~ 158 (479)
+.+++++.++.+ .+.+.+.+ .++.||+||||||+.| +.|++ ||.+.+++++.+++.....-. ..+.
T Consensus 71 ~~gv~~~~~~~v------~~~V~~~~-~~~~~d~lVlAtGs~~~~~~~i---pG~~~~gv~~~~~~~~~~~~~~d~~~~~ 140 (460)
T 1cjc_A 71 SDRCAFYGNVEV------GRDVTVQE-LQDAYHAVVLSYGAEDHQALDI---PGEELPGVFSARAFVGWYNGLPENRELA 140 (460)
T ss_dssp STTEEEEBSCCB------TTTBCHHH-HHHHSSEEEECCCCCEECCCCC---TTTTSTTEEEHHHHHHHHTTCGGGTTCC
T ss_pred hCCcEEEeeeEE------eeEEEecc-ceEEcCEEEEecCcCCCCCCCC---CCCCCCcEEEHHHHHHHhhcCccccccc
Confidence 789999988654 12343333 3468999999999995 66665 776667787765442110000 0001
Q ss_pred -cCCCCCEEEECCChHHHHHHHHHh--------------------hCCC-eEEEEeecCccc--------------cc--
Q 011700 159 -SCSGGNAVVIGGGYIGMECAASLV--------------------INKI-NVTMVFPEAHCM--------------AR-- 200 (479)
Q Consensus 159 -~~~~~~vvVIGgG~~g~E~A~~l~--------------------~~g~-~Vtlv~~~~~~l--------------~~-- 200 (479)
...+++++|||+|++|+|+|..|. +.+. +|+++.|++.+. +.
T Consensus 141 ~~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~ 220 (460)
T 1cjc_A 141 PDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTR 220 (460)
T ss_dssp CCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEE
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCCCce
Confidence 124789999999999999999998 5676 799999987652 21
Q ss_pred ------cC----------CHH---HHHHHHHHHHh--------------CCcEEEcCCceEEEEEcCCC-cEEEEEeC--
Q 011700 201 ------LF----------TPK---IASYYEEYYKS--------------KGVKFVKGTVLSSFDVDSNG-KVVAVNLR-- 244 (479)
Q Consensus 201 ------~~----------~~~---~~~~~~~~l~~--------------~GV~i~~~~~v~~i~~~~~g-~v~~v~~~-- 244 (479)
.+ +.. +.+.+.+.+++ +||++++++.+.+|..++++ ++..+.+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~ 300 (460)
T 1cjc_A 221 PMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVT 300 (460)
T ss_dssp EECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEE
T ss_pred eEechhhhcchhhhhhhccHHHHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcCCCCceEEEEEEEEE
Confidence 00 110 23444455555 89999999999999874335 55555543
Q ss_pred -------------CC--cEEeccEEEEecCCCCChhhhhccc-cc-ccCcEEEcCcccCC-CCCeEEEeeeccccccccC
Q 011700 245 -------------DG--NRLPTDMVVVGIGIRPNTSLFEGQL-TL-EKGGIKVTGRLQSS-NSSVYAVGDVAAFPLKLLG 306 (479)
Q Consensus 245 -------------~g--~~i~~D~Vi~a~G~~p~~~l~~~~~-~~-~~g~i~Vd~~l~t~-~~~IyA~GD~~~~~~~~~g 306 (479)
+| +++++|.|++++|++|++ + .++ .+ ++|+|.||+++||+ +|+|||+|||+..+.
T Consensus 301 ~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~-l--~gl~~~d~~g~i~vn~~~rt~~~p~vya~Gd~~~g~~---- 373 (460)
T 1cjc_A 301 RLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRP-I--DPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGPT---- 373 (460)
T ss_dssp EEESSGGGCEEEEEEEEEEEECSEEEECCCEECCC-C--CTTSCCBTTTTBCCEETTEETTCTTEEECTHHHHCTT----
T ss_pred EEccccCCCcccCCCceEEEEcCEEEECCCCCCCC-C--CCCcccccCCCeeECCCCcCcCCCCEEEEEeCCcCCC----
Confidence 34 579999999999999998 3 456 55 56889999999998 799999999997553
Q ss_pred ceeecccHHHHHHHHHHHHHHHcCC
Q 011700 307 ETRRLEHVDSARKSAKHAVAAIMEP 331 (479)
Q Consensus 307 ~~~~~~~~~~A~~~g~~aa~~i~~~ 331 (479)
..+..|+.+|+.+|.+|++.
T Consensus 374 -----~~i~~a~~~g~~aa~~i~~~ 393 (460)
T 1cjc_A 374 -----GVITTTMTDSFLTGQILLQD 393 (460)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHH
T ss_pred -----ccHHHHHHHHHHHHHHHHHH
Confidence 23567899999999998753
No 81
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=99.97 E-value=1.3e-30 Score=267.83 Aligned_cols=285 Identities=12% Similarity=0.116 Sum_probs=196.6
Q ss_pred CeEEEECCchHHHHHHHHHHH---cCCCCCcEEEEcCCCCCC----CCC-Cc-cc-----ccccCCCC-------CCCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTK---RGVPPGELCIISEEPVAP----YER-PA-LS-----KGYLLPEA-------PARLP 63 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~---~g~~~~~V~lie~~~~~~----~~~-~~-l~-----~~~~~~~~-------~~~~~ 63 (479)
+||+|||||+||++||..|++ .|.+..+|+|||+++... |.. +. .. ...+.... ...++
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~ 82 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA 82 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence 799999999999999999999 887644589999986421 110 00 00 00000000 00011
Q ss_pred Ccccc-----------cCCcccCCCHhHHHHcCcE--EEeCceEEEEECCCc----EEEeCC---C--cEEEeceEEeec
Q 011700 64 SFHTC-----------VGANEERLTPKWYNEHGIE--LVLGTRVKSADVRRK----TLVTAT---G--ETISYKILIIAT 121 (479)
Q Consensus 64 ~~~~~-----------~~~~~~~~~~~~~~~~gv~--~~~~~~v~~i~~~~~----~v~~~~---g--~~~~~d~lviAt 121 (479)
.+... ........+.+++++.+++ ++.+++|..++.... +|.+.+ | .++.||+||+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt 162 (464)
T 2xve_A 83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT 162 (464)
T ss_dssp TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence 11100 0000111223344566887 888889999986554 666644 3 578999999999
Q ss_pred C--CCcccccccCCCCCCC--CCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700 122 G--ARALKLEEFGLSGSDA--ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 197 (479)
Q Consensus 122 G--~~~~~~~~~g~~g~~~--~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 197 (479)
| +.|+.|++ +|.+. ..+++..++.+.. ...+++|+|||+|++|+|+|..|++.|.+|+++++++.+
T Consensus 163 G~~s~p~~p~i---pG~~~~~g~~~hs~~~~~~~-------~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~ 232 (464)
T 2xve_A 163 GHFSTPYVPEF---EGFEKFGGRILHAHDFRDAL-------EFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAP 232 (464)
T ss_dssp CSSSSBCCCCC---BTTTTCCSEEEEGGGCCCGG-------GGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCC
T ss_pred CCCCCCccCCC---CCcccCCceEEehhhhCCHh-------HcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCC
Confidence 9 88988877 44432 2244444332221 125899999999999999999999999999999999887
Q ss_pred ccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhhc--cccccc
Q 011700 198 MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG--QLTLEK 275 (479)
Q Consensus 198 l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~--~~~~~~ 275 (479)
++..+ ..||+++ ..|++++. + .|.+.||+++++|.||+|+|++|+.+++.. ++..++
T Consensus 233 ~~~~~-------------~~~V~~~--~~V~~i~~--~----~V~~~dG~~i~~D~Vi~atG~~p~~~~l~~~~gl~~~~ 291 (464)
T 2xve_A 233 MGYKW-------------PENWDER--PNLVRVDT--E----NAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNN 291 (464)
T ss_dssp CCCCC-------------CTTEEEC--SCEEEECS--S----EEEETTSCEEECSEEEECCCBCCCCTTBCTTTCCCCCS
T ss_pred CCCCC-------------CCceEEc--CCeEEEeC--C----EEEECCCCEEeCCEEEECCCCCCCCCCcCcccccccCC
Confidence 76422 2578887 67888853 2 477899999999999999999999988764 345444
Q ss_pred C-cEEEcC---cccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCC
Q 011700 276 G-GIKVTG---RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD 332 (479)
Q Consensus 276 g-~i~Vd~---~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~ 332 (479)
+ .+ +|. .++|+.|+|||+|||... ..+..|..||+.++++|.+..
T Consensus 292 ~~~v-~~~~~~~~~t~~p~i~aiGd~~~~-----------~~~~~a~~qa~~~a~~l~G~~ 340 (464)
T 2xve_A 292 RLWP-LNLYKGVVWEDNPKFFYIGMQDQW-----------YSFNMFDAQAWYARDVIMGRL 340 (464)
T ss_dssp SSCC-SSEETTTEESSSTTEEECSCSCCS-----------SCHHHHHHHHHHHHHHHTTSS
T ss_pred Cccc-ccccceEecCCCCCEEEEeCcccc-----------cchHHHHHHHHHHHHHHcCCC
Confidence 4 44 443 367899999999998863 246788999999999998764
No 82
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=99.97 E-value=1.5e-32 Score=280.91 Aligned_cols=288 Identities=22% Similarity=0.268 Sum_probs=197.6
Q ss_pred CcCeEEEECCchHHHHHHHHHHH-c------CCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTK-R------GVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEER 75 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~-~------g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (479)
+++||+||||||||++||..|++ + +.+ |+|||+++. +|... ..+. .|... .......
T Consensus 2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~---V~lie~~~~-~gg~~--~~gv--------~p~~~--~~~~~~~ 65 (456)
T 1lqt_A 2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMA---VDMLEMLPT-PWGLV--RSGV--------APDHP--KIKSISK 65 (456)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEE---EEEEESSSS-CSTHH--HHTS--------CTTCT--GGGGGHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhhCccccCCCCe---EEEEecCCC-CCCcc--cccc--------CCCCC--CHHHHHH
Confidence 46899999999999999999999 7 665 999999864 33211 1111 01110 0011112
Q ss_pred CCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCC-cccccccCCCCCCCCCeEEecCHHHHH---
Q 011700 76 LTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGAR-ALKLEEFGLSGSDAENVCYLRDLADAN--- 151 (479)
Q Consensus 76 ~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~-~~~~~~~g~~g~~~~~v~~~~~~~~~~--- 151 (479)
.+.+++++.+++++.+..+ ++.+.+.++ ++.||+||||||+. |+.+++ ||.+.+++++.+++....
T Consensus 66 ~~~~~~~~~~v~~~~~v~v------~~~v~~~~~-~~~~d~lViAtG~~~~~~~~i---pG~~~~gv~~~~~~~~~~~~~ 135 (456)
T 1lqt_A 66 QFEKTAEDPRFRFFGNVVV------GEHVQPGEL-SERYDAVIYAVGAQSDRMLNI---PGEDLPGSIAAVDFVGWYNAH 135 (456)
T ss_dssp HHHHHHTSTTEEEEESCCB------TTTBCHHHH-HHHSSEEEECCCCCEECCCCC---TTTTSTTEEEHHHHHHHHTTC
T ss_pred HHHHHHhcCCCEEEeeEEE------CCEEEECCC-eEeCCEEEEeeCCCCCCCCCC---CCCCCCCcEEHHHHHhhhhcC
Confidence 3345566789999987542 233444444 47899999999997 666665 676666777655432110
Q ss_pred -HHHHHHhcCCCCCEEEECCChHHHHHHHHHhhC--------------------C-CeEEEEeecCccccccCC-HH---
Q 011700 152 -RLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN--------------------K-INVTMVFPEAHCMARLFT-PK--- 205 (479)
Q Consensus 152 -~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~--------------------g-~~Vtlv~~~~~~l~~~~~-~~--- 205 (479)
.+...+....+++++|||+|++|+|+|..|.+. + .+|+++.|++.+... |+ ++
T Consensus 136 ~d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~-f~~~elre 214 (456)
T 1lqt_A 136 PHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAA-FTTLELRE 214 (456)
T ss_dssp GGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCC-CCHHHHHH
T ss_pred cccccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhc-cChHHHHH
Confidence 000011112478999999999999999999874 5 499999998876543 22 11
Q ss_pred ---------------H------------------HHHHHHHHHh------CCcEEEcCCceEEEEEcCCCcEEEEEeC--
Q 011700 206 ---------------I------------------ASYYEEYYKS------KGVKFVKGTVLSSFDVDSNGKVVAVNLR-- 244 (479)
Q Consensus 206 ---------------~------------------~~~~~~~l~~------~GV~i~~~~~v~~i~~~~~g~v~~v~~~-- 244 (479)
+ .+.+.+.+++ +||++++++.+.+|.. ++++..+.+.
T Consensus 215 l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~--~~~v~~v~~~~~ 292 (456)
T 1lqt_A 215 LADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKG--KRKVERIVLGRN 292 (456)
T ss_dssp GGGCTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEEC--SSSCCEEEEEEE
T ss_pred hhcCCCceeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEec--CCcEeEEEEEEE
Confidence 1 2445555555 7999999999999986 3443334443
Q ss_pred --------------CC--cEEeccEEEEecCCCCChhhhhccccc-ccCcEEEcCccc-CCCCCeEEEeeeccccccccC
Q 011700 245 --------------DG--NRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQ-SSNSSVYAVGDVAAFPLKLLG 306 (479)
Q Consensus 245 --------------~g--~~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd~~l~-t~~~~IyA~GD~~~~~~~~~g 306 (479)
+| ++++||.|++++|++|++ + .++.+ ++|+|.||+++| |+.|+|||+|||+..+..
T Consensus 293 ~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~-l--~gl~~d~~g~i~vn~~~rvt~~pgvya~GD~~~gp~~--- 366 (456)
T 1lqt_A 293 ELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVP-T--PGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTG--- 366 (456)
T ss_dssp EEEECSSSSEEEEEEEEEEEEECSEEEECSCEECCC-C--TTSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSCS---
T ss_pred EecCCCcccccccCCCceEEEEcCEEEEccccccCC-C--CCCcccCCCCeeECCCCcCCCCCCEEEEeccCCCCch---
Confidence 34 469999999999999998 3 34555 568899999999 799999999999976532
Q ss_pred ceeecccHHHHHHHHHHHHHHHcCC
Q 011700 307 ETRRLEHVDSARKSAKHAVAAIMEP 331 (479)
Q Consensus 307 ~~~~~~~~~~A~~~g~~aa~~i~~~ 331 (479)
.+..|+.+|..+|.+|++.
T Consensus 367 ------~i~~a~~~g~~~a~~i~~~ 385 (456)
T 1lqt_A 367 ------VIGTNKKDAQDTVDTLIKN 385 (456)
T ss_dssp ------CTTHHHHHHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHHHHHHHH
Confidence 2446888999999998753
No 83
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=99.97 E-value=1.2e-30 Score=268.66 Aligned_cols=310 Identities=13% Similarity=0.086 Sum_probs=194.6
Q ss_pred cCeEEEECCchHHHHHHHHHHHcC-----CCCCcEEEEcCCCCCCCCCCcccccccC----------CCCCCCCCCcc--
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRG-----VPPGELCIISEEPVAPYERPALSKGYLL----------PEAPARLPSFH-- 66 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g-----~~~~~V~lie~~~~~~~~~~~l~~~~~~----------~~~~~~~~~~~-- 66 (479)
.+||||||||+||+++|..|+++| .+ |+|||+++...|....+..+... .........+.
T Consensus 30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~---v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~ 106 (463)
T 3s5w_A 30 VHDLIGVGFGPSNIALAIALQERAQAQGALE---VLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNY 106 (463)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHHHHHCCCC---EEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHhcccccCccc---EEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHh
Confidence 469999999999999999999988 66 99999998655433211111000 00000000000
Q ss_pred -cccC---------------CcccCCCHhHHHHcCcEEEeCceEEEEECC---Cc----EEEeCCCc----EEEeceEEe
Q 011700 67 -TCVG---------------ANEERLTPKWYNEHGIELVLGTRVKSADVR---RK----TLVTATGE----TISYKILII 119 (479)
Q Consensus 67 -~~~~---------------~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~---~~----~v~~~~g~----~~~~d~lvi 119 (479)
...+ ......+..+.++.+++++.+++|..++.+ ++ +|.+.++. ++.||+||+
T Consensus 107 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVl 186 (463)
T 3s5w_A 107 LHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVV 186 (463)
T ss_dssp HHHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEE
T ss_pred hhhcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEE
Confidence 0000 000011112223457899999999999875 43 55555654 899999999
Q ss_pred ecCCCcccccccCCCCCCCC-CeEEecCHHH-HHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhC--CCeEEEEeecC
Q 011700 120 ATGARALKLEEFGLSGSDAE-NVCYLRDLAD-ANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN--KINVTMVFPEA 195 (479)
Q Consensus 120 AtG~~~~~~~~~g~~g~~~~-~v~~~~~~~~-~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~--g~~Vtlv~~~~ 195 (479)
|||+.|..|+. +++.... .+++...+.+ ...+.... ..+++|+|||+|.+|+|+|..|.+. +.+|+++.|.+
T Consensus 187 AtG~~p~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~ 262 (463)
T 3s5w_A 187 SPGGTPRIPQV--FRALKGDGRVFHHSQYLEHMAKQPCSS--GKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRAS 262 (463)
T ss_dssp CCCCEECCCGG--GGGGTTCTTEEEGGGHHHHHCC---------CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSS
T ss_pred CCCCCCCCcch--hhhcCCCCcEEECHHHHhhHHHhhhcc--cCCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 99999887763 1333222 4555444322 22221100 1478999999999999999999998 99999999998
Q ss_pred cccccc-------------------CCHHHHHHHHHHHHh--------------------------CCcEEEcCCceEEE
Q 011700 196 HCMARL-------------------FTPKIASYYEEYYKS--------------------------KGVKFVKGTVLSSF 230 (479)
Q Consensus 196 ~~l~~~-------------------~~~~~~~~~~~~l~~--------------------------~GV~i~~~~~v~~i 230 (479)
.+++.. ++++....+.+.+.. .||++++++.|+++
T Consensus 263 ~~~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v 342 (463)
T 3s5w_A 263 ALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERA 342 (463)
T ss_dssp SCCBCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEE
T ss_pred CCcCccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEE
Confidence 775521 223333333333222 69999999999999
Q ss_pred EEcCCCcEEEEEeC---CCc--EEeccEEEEecCCCCC--hhhhhcccccccCcEEEcCcccCC-----CCCeEEEeeec
Q 011700 231 DVDSNGKVVAVNLR---DGN--RLPTDMVVVGIGIRPN--TSLFEGQLTLEKGGIKVTGRLQSS-----NSSVYAVGDVA 298 (479)
Q Consensus 231 ~~~~~g~v~~v~~~---~g~--~i~~D~Vi~a~G~~p~--~~l~~~~~~~~~g~i~Vd~~l~t~-----~~~IyA~GD~~ 298 (479)
+.++ +. ..+.+. +|+ ++++|.||+|+|++|+ .+++....... |+|.||+++|+. .|+|||+|||.
T Consensus 343 ~~~~-~~-~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l~~l~~~~-g~i~v~~~~~~~~~~~~~~~Ifa~G~~~ 419 (463)
T 3s5w_A 343 TATA-QG-IELALRDAGSGELSVETYDAVILATGYERQLHRQLLEPLAEYL-GDHEIGRDYRLQTDERCKVAIYAQGFSQ 419 (463)
T ss_dssp EEET-TE-EEEEEEETTTCCEEEEEESEEEECCCEECCC-CTTTGGGGGGB-C--CCCTTSBCCBCTTBCSEEEESSCCH
T ss_pred EecC-CE-EEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchhHHHHHHh-CCcccCcccccccCCCCCCeEEEcCCCc
Confidence 8743 32 345554 665 4999999999999999 45544321112 889999999974 46799999998
Q ss_pred cccccccCceeecccHHHHHHHHHHHHHHH
Q 011700 299 AFPLKLLGETRRLEHVDSARKSAKHAVAAI 328 (479)
Q Consensus 299 ~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i 328 (479)
...... .+ .....|.+++.++...+
T Consensus 420 ~~~g~~--~~---~l~~~a~r~~~i~~~~~ 444 (463)
T 3s5w_A 420 ASHGLS--DT---LLSVLPVRAEEISGSLY 444 (463)
T ss_dssp HHHCTT--TT---SSTTHHHHHHHHHHHHH
T ss_pred ccCCcC--cc---chhHHHHHHHHHHHHHH
Confidence 743321 11 23345777787775554
No 84
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=99.97 E-value=3.5e-31 Score=286.01 Aligned_cols=297 Identities=16% Similarity=0.140 Sum_probs=197.6
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
++||+||||||||++||..|+++|++ |+|||+++..... +... ..+|++... ..........++.
T Consensus 389 ~~~VvIIGgGpAGl~aA~~L~~~G~~---Vtlie~~~~~GG~-------~~~~---~~~pg~~~~--~~~~~~~~~~i~~ 453 (729)
T 1o94_A 389 KDSVLIVGAGPSGSEAARVLMESGYT---VHLTDTAEKIGGH-------LNQV---AALPGLGEW--SYHRDYRETQITK 453 (729)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSTTTT-------HHHH---TTSTTCGGG--HHHHHHHHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCCCcCCe-------eeec---ccCCChHHH--HHHHHHHHHHHHH
Confidence 47999999999999999999999886 9999998642110 0000 011211100 0000011111111
Q ss_pred c------CcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCccc-----ccccCCCCCC--CCCeEEecCHHHH
Q 011700 84 H------GIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALK-----LEEFGLSGSD--AENVCYLRDLADA 150 (479)
Q Consensus 84 ~------gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~-----~~~~g~~g~~--~~~v~~~~~~~~~ 150 (479)
. ++++..+ +.+.+.++.++.||+||||||+.|+. |..++++|.+ ..++++..+ .
T Consensus 454 ~~~~~~~~v~i~~~----------~~v~~~~~~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~~~---~ 520 (729)
T 1o94_A 454 LLKKNKESQLALGQ----------KPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQ---V 520 (729)
T ss_dssp HHHHSTTCEEECSC----------CCCCHHHHHTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECHHH---H
T ss_pred hhcccCCceEEEeC----------eEEehhhccccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEHHH---H
Confidence 1 3333322 23334445568899999999998542 2222346665 456664322 2
Q ss_pred HHHHHHHhcCCCCCEEEEC--CChHHHHHHHHHhhCCCeEEEEeecCccccc-cCCHHHHHHHHHHHHhCCcEEEcCCce
Q 011700 151 NRLVNVMKSCSGGNAVVIG--GGYIGMECAASLVINKINVTMVFPEAHCMAR-LFTPKIASYYEEYYKSKGVKFVKGTVL 227 (479)
Q Consensus 151 ~~l~~~l~~~~~~~vvVIG--gG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v 227 (479)
+ + .....+++|+||| +|++|+|+|..|++.|.+||++++.+ +++. .++.. .+.+.+.++++||++++++.+
T Consensus 521 --l-~-~~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~~~~~~-~~~~~~~l~~~GV~i~~~~~v 594 (729)
T 1o94_A 521 --M-D-GKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYMHFTLE-YPNMMRRLHELHVEELGDHFC 594 (729)
T ss_dssp --H-H-CCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHHHHHTTC-HHHHHHHHHHTTCEEECSEEE
T ss_pred --h-c-CCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-cccccccccc-HHHHHHHHHhCCCEEEcCcEE
Confidence 1 1 1122468999999 99999999999999999999999988 5542 12322 456778889999999999999
Q ss_pred EEEEEcCCCcEEEEEeCCC-cE------------------EeccEEEEecCCCCChhhhhcccccccCcEEEcCcccCCC
Q 011700 228 SSFDVDSNGKVVAVNLRDG-NR------------------LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSN 288 (479)
Q Consensus 228 ~~i~~~~~g~v~~v~~~~g-~~------------------i~~D~Vi~a~G~~p~~~l~~~~~~~~~g~i~Vd~~l~t~~ 288 (479)
.+++. ++......+.++ ++ +++|.|++++|++|++.+++. +. ..+|+++||++
T Consensus 595 ~~i~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~~~-l~-----~~vd~~~~t~~ 666 (729)
T 1o94_A 595 SRIEP--GRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNE-LK-----ARESEWAENDI 666 (729)
T ss_dssp EEEET--TEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECCHHHHH-HH-----HTGGGTGGGTC
T ss_pred EEEEC--CeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCChHHHHH-Hh-----hhcccccccCC
Confidence 99974 321111111233 33 999999999999999987653 21 12688999999
Q ss_pred CCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecC
Q 011700 289 SSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGD 357 (479)
Q Consensus 289 ~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~ 357 (479)
|+|||+|||+.. ..+..|+.||+.||.+|.+.. .+..+|+ ++..+++.++.+|-
T Consensus 667 ~~VyAiGD~~~~-----------~~~~~A~~~G~~aA~~i~~~l---~~~~~p~-~~~~~~~~~~~~~~ 720 (729)
T 1o94_A 667 KGIYLIGDAEAP-----------RLIADATFTGHRVAREIEEAN---PQIAIPY-KRETIAWGTPHMPG 720 (729)
T ss_dssp CEEEECGGGTSC-----------CCHHHHHHHHHHHHHTTTSSC---TTSCCCC-CCCCCCTTCCSSTT
T ss_pred CCeEEEeCccch-----------hhHHHHHHHHHHHHHHhhhhc---ccCCCCe-eeecccCcccccCC
Confidence 999999999863 346789999999999998653 4556777 66777777765553
No 85
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=99.96 E-value=1.9e-29 Score=258.40 Aligned_cols=287 Identities=11% Similarity=0.073 Sum_probs=191.8
Q ss_pred CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCcccc-cccCC---------------------C
Q 011700 2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YERPALSK-GYLLP---------------------E 57 (479)
Q Consensus 2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~~~~l~~-~~~~~---------------------~ 57 (479)
+..+||+|||||++|+++|..|++.|.. .+|+|||+.+... +....... .+-.+ .
T Consensus 4 ~~~~dV~IIGaG~aGl~aA~~L~~~G~~-~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~ 82 (447)
T 2gv8_A 4 PTIRKIAIIGAGPSGLVTAKALLAEKAF-DQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPS 82 (447)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHTTTCC-SEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCC
T ss_pred CCCCEEEEECccHHHHHHHHHHHhcCCC-CCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccC
Confidence 3568999999999999999999998871 2399999985321 11100000 00000 0
Q ss_pred CC-----C-------CCCCcccccCC-------cccCCCHhHHHHcCcEEEeCceEEEEECCCc--EEEeCC---Cc---
Q 011700 58 AP-----A-------RLPSFHTCVGA-------NEERLTPKWYNEHGIELVLGTRVKSADVRRK--TLVTAT---GE--- 110 (479)
Q Consensus 58 ~~-----~-------~~~~~~~~~~~-------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~--~v~~~~---g~--- 110 (479)
.. . .++.+...... .....+..+.++.+..++.+++|..++.+.. +|.+.+ |+
T Consensus 83 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~ 162 (447)
T 2gv8_A 83 PLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPIS 162 (447)
T ss_dssp CCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEE
T ss_pred chhhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeE
Confidence 00 0 00000000000 0001112233344667888999999976554 555544 65
Q ss_pred EEEeceEEeecCC--CcccccccCCCCCC------CCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHh
Q 011700 111 TISYKILIIATGA--RALKLEEFGLSGSD------AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLV 182 (479)
Q Consensus 111 ~~~~d~lviAtG~--~~~~~~~~g~~g~~------~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~ 182 (479)
++.||+||+|||. .|+.|++ +|.+ ...+++.+++.+... ..+++|+|||+|++|+|+|..|+
T Consensus 163 ~~~~d~VVvAtG~~s~p~~p~i---~G~~~~~~~~~g~v~~~~~~~~~~~-------~~~k~VvVvG~G~sg~e~A~~l~ 232 (447)
T 2gv8_A 163 KDIFDAVSICNGHYEVPYIPNI---KGLDEYAKAVPGSVLHSSLFREPEL-------FVGESVLVVGGASSANDLVRHLT 232 (447)
T ss_dssp EEEESEEEECCCSSSSBCBCCC---BTHHHHHHHSTTSEEEGGGCCCGGG-------GTTCCEEEECSSHHHHHHHHHHT
T ss_pred EEEeCEEEECCCCCCCCCCCCC---CChhhhhccCCccEEEecccCChhh-------cCCCEEEEEccCcCHHHHHHHHH
Confidence 7999999999998 7777766 5532 123565554433322 25899999999999999999999
Q ss_pred hCCCe-EEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcE-EeccEEEEecCC
Q 011700 183 INKIN-VTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR-LPTDMVVVGIGI 260 (479)
Q Consensus 183 ~~g~~-Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~-i~~D~Vi~a~G~ 260 (479)
+.+.+ |++++|++.+ +++.||++ ...|++++. +++ .|.+.||++ +++|.||+|+|+
T Consensus 233 ~~~~~~V~l~~r~~~~----------------l~~~~i~~--~~~v~~~~~-~~~---~v~~~dG~~~~~~D~vi~atG~ 290 (447)
T 2gv8_A 233 PVAKHPIYQSLLGGGD----------------IQNESLQQ--VPEITKFDP-TTR---EIYLKGGKVLSNIDRVIYCTGY 290 (447)
T ss_dssp TTSCSSEEEECTTCCS----------------CBCSSEEE--ECCEEEEET-TTT---EEEETTTEEECCCSEEEECCCB
T ss_pred HHhCCcEEEEeCCCCc----------------CCCCCeEE--ecCeEEEec-CCC---EEEECCCCEeccCCEEEECCCC
Confidence 99999 9999998764 34567774 467888864 222 577889976 799999999999
Q ss_pred CCChhh-----hhcc-ccc-ccCcEEEcCccc---CCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700 261 RPNTSL-----FEGQ-LTL-EKGGIKVTGRLQ---SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 261 ~p~~~l-----~~~~-~~~-~~g~i~Vd~~l~---t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~ 330 (479)
+|++++ ++.. ... .++.+.+|.+.+ +++|+||++||+... ..+..|..||+.+|++|.+
T Consensus 291 ~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~~~~~p~l~~~G~~~~~-----------~~~~~a~~qa~~~a~~~~g 359 (447)
T 2gv8_A 291 LYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHV-----------VPFPTSQAQAAFLARVWSG 359 (447)
T ss_dssp CCCCCCHHHHSCCSTTTCCCSSSSSCCSEETTTEETTCTTEEESSCCBSS-----------CHHHHHHHHHHHHHHHHTT
T ss_pred CcCCCCCcccccccccCceecCCCcccccccccccCCCCcEEEEeccccc-----------cCchHHHHHHHHHHHHHcC
Confidence 999988 5531 111 245555665555 689999999999764 2467789999999999987
Q ss_pred CC
Q 011700 331 PD 332 (479)
Q Consensus 331 ~~ 332 (479)
..
T Consensus 360 ~~ 361 (447)
T 2gv8_A 360 RL 361 (447)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 86
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=99.96 E-value=4.2e-30 Score=266.01 Aligned_cols=256 Identities=17% Similarity=0.127 Sum_probs=187.7
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH-
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN- 82 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 82 (479)
++||+|||||+||++||.+|+++ ++ |+|||+++...+.....+... ..++. ....+...+.
T Consensus 108 ~~dVvIIGgG~aGl~aA~~L~~~-~~---V~vie~~~~~GG~~~~~~~~~------~g~~~--------~~~~~~~~l~~ 169 (493)
T 1y56_A 108 VVDVAIIGGGPAGIGAALELQQY-LT---VALIEERGWLGGDMWLKGIKQ------EGFNK--------DSRKVVEELVG 169 (493)
T ss_dssp EESCCEECCSHHHHHHHHHHTTT-CC---EEEECTTSSSSCSGGGTCSEE------TTTTE--------EHHHHHHHHHH
T ss_pred cCCEEEECccHHHHHHHHHHHhc-CC---EEEEeCCCCCCCeeecccccc------CCCCC--------CHHHHHHHHHH
Confidence 47999999999999999999997 54 999999976433221111100 00110 0001111111
Q ss_pred --HcCcEEEeCceEEEEECCCcEEEe---CCCc--EEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHH
Q 011700 83 --EHGIELVLGTRVKSADVRRKTLVT---ATGE--TISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVN 155 (479)
Q Consensus 83 --~~gv~~~~~~~v~~i~~~~~~v~~---~~g~--~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~ 155 (479)
+.+++++.++.|..++.+++.+.+ .+++ ++.||+||||||+.|+.|++ +|.+.+++++.. ++..+.+
T Consensus 170 ~l~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~~~---~g~~~~gv~~~~---~~~~~~~ 243 (493)
T 1y56_A 170 KLNENTKIYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDSTMLF---ENNDMPGVFRRD---FALEVMN 243 (493)
T ss_dssp TCCTTEEEETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEECCCCC---TTTTSTTEEEHH---HHHHHHH
T ss_pred HHhcCCEEEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCccCCCC---CCCCCCCEEEcH---HHHHHHH
Confidence 458999999889888877654332 3443 68999999999999988776 777777887644 3333333
Q ss_pred HHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCC
Q 011700 156 VMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSN 235 (479)
Q Consensus 156 ~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~ 235 (479)
.....++++++|||+|++++| +.++++||++++++.+.+++. +
T Consensus 244 ~~~~~~~~~vvViGgG~~gle-----------------------------------~~l~~~GV~v~~~~~v~~i~~--~ 286 (493)
T 1y56_A 244 VWEVAPGRKVAVTGSKADEVI-----------------------------------QELERWGIDYVHIPNVKRVEG--N 286 (493)
T ss_dssp TSCBCSCSEEEEESTTHHHHH-----------------------------------HHHHHHTCEEEECSSEEEEEC--S
T ss_pred hcccCCCCEEEEECCCHHHHH-----------------------------------HHHHhCCcEEEeCCeeEEEec--C
Confidence 222335689999999999988 446778999999999999986 3
Q ss_pred CcEEEEEeCCCcEEeccEEEEecCCCCChhhhhc-cccc---ccCcEE-EcCcccCCCCCeEEEeeeccccccccCceee
Q 011700 236 GKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTL---EKGGIK-VTGRLQSSNSSVYAVGDVAAFPLKLLGETRR 310 (479)
Q Consensus 236 g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~---~~g~i~-Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~ 310 (479)
+.+..+.+.+|+++++|.|++++|.+|++++++. ++.. ++|+|. ||+++| +.|+|||+|||+..
T Consensus 287 ~~v~~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~g~~~~~~~~g~i~~vd~~~~-s~~~vya~GD~~~~---------- 355 (493)
T 1y56_A 287 EKVERVIDMNNHEYKVDALIFADGRRPDINPITQAGGKLRFRRGYYSPVLDEYHR-IKDGIYVAGSAVSI---------- 355 (493)
T ss_dssp SSCCEEEETTCCEEECSEEEECCCEEECCHHHHHTTCCEEEETTEEEECCCTTSE-EETTEEECSTTTCC----------
T ss_pred CceEEEEeCCCeEEEeCEEEECCCcCcCchHHHhcCCCccccCCceeeccccccC-cCCCEEEEeccCCc----------
Confidence 3455677888999999999999999999987754 3433 366777 899999 99999999999975
Q ss_pred cccHHHHHHHHHHHHHHHcCCC
Q 011700 311 LEHVDSARKSAKHAVAAIMEPD 332 (479)
Q Consensus 311 ~~~~~~A~~~g~~aa~~i~~~~ 332 (479)
.++..|..||+.||.+|.+..
T Consensus 356 -~~~~~A~~~g~~aa~~i~~~l 376 (493)
T 1y56_A 356 -KPHYANYLEGKLVGAYILKEF 376 (493)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHT
T ss_pred -cCHHHHHHHHHHHHHHHHHHc
Confidence 346789999999999997643
No 87
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=99.96 E-value=1.8e-30 Score=279.40 Aligned_cols=271 Identities=18% Similarity=0.121 Sum_probs=192.8
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN 82 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (479)
+++||+|||||+||++||..|+++|++ |+|||+++..... +.. ...+|.+.. ...........+.
T Consensus 390 ~~~~VvIIGgG~AGl~aA~~La~~G~~---V~liE~~~~~GG~-------~~~---~~~~p~~~~--~~~~~~~~~~~~~ 454 (690)
T 3k30_A 390 SDARVLVVGAGPSGLEAARALGVRGYD---VVLAEAGRDLGGR-------VTQ---ESALPGLSA--WGRVKEYREAVLA 454 (690)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCE---EEEECSSSSSCTH-------HHH---HHTSTTCGG--GGHHHHHHHHHHH
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCCCE-------eee---ccCCCchhH--HHHHHHHHHHHHH
Confidence 358999999999999999999999887 9999998642210 000 001111110 0001122334455
Q ss_pred Hc-CcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcc--------cccccCCCCCCCCCeEEecCHHHHHHH
Q 011700 83 EH-GIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARAL--------KLEEFGLSGSDAENVCYLRDLADANRL 153 (479)
Q Consensus 83 ~~-gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~--------~~~~~g~~g~~~~~v~~~~~~~~~~~l 153 (479)
+. +++++.++.+. ..+++++.||+||+|||+.|+ .|++ +|.+..++++.. +..
T Consensus 455 ~~~gv~~~~~~~v~----------~~~~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i---~G~~~~~v~~~~---~~l-- 516 (690)
T 3k30_A 455 ELPNVEIYRESPMT----------GDDIVEFGFEHVITATGATWRTDGVARFHTTAL---PIAEGMQVLGPD---DLF-- 516 (690)
T ss_dssp TCTTEEEESSCCCC----------HHHHHHTTCCEEEECCCEEECSSCCSSSCSSCC---CBCTTSEEECHH---HHH--
T ss_pred HcCCCEEEECCeec----------HHHHhhcCCCEEEEcCCCccccccccccCCCCC---CCCCCCcEEcHH---HHh--
Confidence 55 88988875432 223456789999999999955 4444 666555554322 211
Q ss_pred HHHHhcCCCCCEEEEC--CChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEE
Q 011700 154 VNVMKSCSGGNAVVIG--GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFD 231 (479)
Q Consensus 154 ~~~l~~~~~~~vvVIG--gG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~ 231 (479)
+ .....+++++||| +|++|+|+|..|.+.|.+|+++++.+.+++...++...+.+.+.++++||+++++++|++++
T Consensus 517 -~-~~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~ 594 (690)
T 3k30_A 517 -A-GRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVG 594 (690)
T ss_dssp -T-TCCCSSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGGGGTCHHHHHHHHHHTTCEEEESEEEEEEE
T ss_pred -C-CCCCCCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccccchhHHHHHHHHHHCCCEEEcCcEEEEEE
Confidence 1 1122467899999 99999999999999999999999998887754446667888899999999999999999997
Q ss_pred EcCCCcEEEEE---eCCCcEEeccEEEEecCCCCChhhhhcccccccCcEEEcCcccCCCCCeEEEeeeccccccccCce
Q 011700 232 VDSNGKVVAVN---LRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGET 308 (479)
Q Consensus 232 ~~~~g~v~~v~---~~~g~~i~~D~Vi~a~G~~p~~~l~~~~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~ 308 (479)
. ++. .+. ..+++++++|.||+|+|++|++.++... .. .+. +|+.|+|||+|||+..+
T Consensus 595 ~--~~~--~v~~~~~~~~~~i~aD~VV~A~G~~p~~~l~~~l-~~-~~~-------~t~~~~VyaiGD~~~~~------- 654 (690)
T 3k30_A 595 A--GGV--TVRDTYASIERELECDAVVMVTARLPREELYLDL-VA-RRD-------AGEIASVRGIGDAWAPG------- 654 (690)
T ss_dssp T--TEE--EEEETTTCCEEEEECSEEEEESCEEECCHHHHHH-HH-HHH-------HTSCSEEEECGGGTSCB-------
T ss_pred C--CeE--EEEEccCCeEEEEECCEEEECCCCCCChHHHHHH-hh-hhc-------ccCCCCEEEEeCCCchh-------
Confidence 4 321 232 2345689999999999999999876532 11 111 89999999999999753
Q ss_pred eecccHHHHHHHHHHHHHHHcCCC
Q 011700 309 RRLEHVDSARKSAKHAVAAIMEPD 332 (479)
Q Consensus 309 ~~~~~~~~A~~~g~~aa~~i~~~~ 332 (479)
.+..|..||+.||.+|.+..
T Consensus 655 ----~~~~A~~~g~~aa~~i~~~l 674 (690)
T 3k30_A 655 ----TIAAAVWSGRRAAEEFDAVL 674 (690)
T ss_dssp ----CHHHHHHHHHHHHHHTTCCC
T ss_pred ----hHHHHHHHHHHHHHHHHhhc
Confidence 35669999999999998764
No 88
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=99.95 E-value=1.4e-28 Score=263.84 Aligned_cols=259 Identities=22% Similarity=0.248 Sum_probs=186.6
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
++||+|||||+||++||..|+++|++ |+|||+++...+. ..+.. .+|..... ......+.+++++
T Consensus 373 ~~~vvIIGgG~AGl~aA~~l~~~g~~---V~lie~~~~~gg~-~~~~~---------~~~~~~~~--~~~~~~~~~~~~~ 437 (671)
T 1ps9_A 373 KKNLAVVGAGPAGLAFAINAAARGHQ---VTLFDAHSEIGGQ-FNIAK---------QIPGKEEF--YETLRYYRRMIEV 437 (671)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCE---EEEEESSSSSCTT-HHHHT---------TSTTCTTH--HHHHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCe---EEEEeCCCCCCCe-eeccc---------cCCCHHHH--HHHHHHHHHHHHH
Confidence 57999999999999999999998876 9999998653221 00100 01111000 0001123455677
Q ss_pred cCcEEEeCceEEEEECCCcEEEeCCCcEE-EeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCC
Q 011700 84 HGIELVLGTRVKSADVRRKTLVTATGETI-SYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSG 162 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~-~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~ 162 (479)
.+++++.++.+.. ..+ .||+||||||++|+.|++ +|.+..++++..+. +. .....+
T Consensus 438 ~gv~~~~~~~v~~-------------~~~~~~d~lviAtG~~p~~~~i---~G~~~~~v~~~~~~-----l~--~~~~~~ 494 (671)
T 1ps9_A 438 TGVTLKLNHTVTA-------------DQLQAFDETILASGIVPRTPPI---DGIDHPKVLSYLDV-----LR--DKAPVG 494 (671)
T ss_dssp HTCEEEESCCCCS-------------SSSCCSSEEEECCCEEECCCCC---BTTTSTTEEEHHHH-----HT--SCCCCC
T ss_pred cCCEEEeCcEecH-------------HHhhcCCEEEEccCCCcCCCCC---CCCCCCcEeeHHHH-----hh--CCCCCC
Confidence 8999999875431 123 899999999999988876 66555566654221 11 112257
Q ss_pred CCEEEECCChHHHHHHHHHhhCCC-------------------------------------eEEEEeecCccccccCCHH
Q 011700 163 GNAVVIGGGYIGMECAASLVINKI-------------------------------------NVTMVFPEAHCMARLFTPK 205 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~-------------------------------------~Vtlv~~~~~~l~~~~~~~ 205 (479)
++++|||+|++|+|+|..|++.|. +|+++++.+..+...+++.
T Consensus 495 ~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~~ 574 (671)
T 1ps9_A 495 NKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKT 574 (671)
T ss_dssp SEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTT
T ss_pred CeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhhccccccc
Confidence 899999999999999999998773 5677777766666557777
Q ss_pred HHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC--cEEeccEEEEecCCCCChhhhhcccccccCcEEEcCc
Q 011700 206 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGR 283 (479)
Q Consensus 206 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~Vi~a~G~~p~~~l~~~~~~~~~g~i~Vd~~ 283 (479)
....+.+.|+++||++++++++++++. ++ + .+. .+| +++++|.|++++|++|++++++.
T Consensus 575 ~~~~~~~~l~~~GV~v~~~~~v~~i~~--~~-v-~~~-~~G~~~~i~~D~Vi~a~G~~p~~~l~~~-------------- 635 (671)
T 1ps9_A 575 TGWIHRTTLLSRGVKMIPGVSYQKIDD--DG-L-HVV-INGETQVLAVDNVVICAGQEPNRALAQP-------------- 635 (671)
T ss_dssp THHHHHHHHHHTTCEEECSCEEEEEET--TE-E-EEE-ETTEEEEECCSEEEECCCEEECCTTHHH--------------
T ss_pred cHHHHHHHHHhcCCEEEeCcEEEEEeC--Ce-E-EEe-cCCeEEEEeCCEEEECCCccccHHHHHH--------------
Confidence 788888999999999999999999973 33 2 232 567 57999999999999999987652
Q ss_pred ccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHH
Q 011700 284 LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAI 328 (479)
Q Consensus 284 l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i 328 (479)
++...++||++|||+.... ..+..|++||..+|.||
T Consensus 636 l~~~g~~v~aiGD~~~~~~---------~~~~~A~~~g~~aA~~i 671 (671)
T 1ps9_A 636 LIDSGKTVHLIGGCDVAME---------LDARRAIAQGTRLALEI 671 (671)
T ss_dssp HHTTTCCEEECGGGTCCSS---------CCHHHHHHHHHHHHHHC
T ss_pred HHhcCCCEEEECCcCccCc---------hhHHHHHHHHHHHHHhC
Confidence 1223478999999987642 24788999999999885
No 89
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=99.95 E-value=1.3e-27 Score=249.31 Aligned_cols=297 Identities=16% Similarity=0.179 Sum_probs=188.5
Q ss_pred cCeEEEECCchHHHHHHHHHH-HcCCCCCcEEEEcCCCCCC-------CCCCc--ccccccCCCCC------CCCCCccc
Q 011700 4 AFVYVIVGGGVAAGYAALEFT-KRGVPPGELCIISEEPVAP-------YERPA--LSKGYLLPEAP------ARLPSFHT 67 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~-~~g~~~~~V~lie~~~~~~-------~~~~~--l~~~~~~~~~~------~~~~~~~~ 67 (479)
++||+|||||++|+++|..|+ +.|.+ |+|||+++... |.... .....+..... ..++.. .
T Consensus 8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~---v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~-~ 83 (540)
T 3gwf_A 8 TVDAVVIGAGFGGIYAVHKLHHELGLT---TVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTT-Y 83 (540)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCC---EEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBS-E
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCC---EEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCccc-C
Confidence 479999999999999999999 87875 99999976421 11100 00000000000 000000 0
Q ss_pred ccCCcccCCCHhHHHHcCc--EEEeCceEEEEECCCc----EEEeCCCcEEEeceEEeecC--CCcccccccCCCCCCCC
Q 011700 68 CVGANEERLTPKWYNEHGI--ELVLGTRVKSADVRRK----TLVTATGETISYKILIIATG--ARALKLEEFGLSGSDAE 139 (479)
Q Consensus 68 ~~~~~~~~~~~~~~~~~gv--~~~~~~~v~~i~~~~~----~v~~~~g~~~~~d~lviAtG--~~~~~~~~~g~~g~~~~ 139 (479)
.........+....+++++ +++.+++|.+++.+.. +|.+.+|+++.||+||+||| +.|+.|+++|++....
T Consensus 84 ~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g- 162 (540)
T 3gwf_A 84 ITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFEG- 162 (540)
T ss_dssp EEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCCCCTTGGGCCS-
T ss_pred CCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCCCCCCccccCC-
Confidence 0001111223444567787 7888999999987655 77888888999999999999 6788887743322111
Q ss_pred CeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc-ccc---cCCHHHHHHHH----
Q 011700 140 NVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC-MAR---LFTPKIASYYE---- 211 (479)
Q Consensus 140 ~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~-l~~---~~~~~~~~~~~---- 211 (479)
.+++.....+. ....+++|+|||+|.+|+|+|..|++.+.+||+++|.+.+ ++. .+++...+.++
T Consensus 163 ~~~~~~~~~~~-------~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~~ 235 (540)
T 3gwf_A 163 ETIHTAAWPEG-------KSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYD 235 (540)
T ss_dssp EEEEGGGCCSS-------CCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCCHHHHHHHHHTHH
T ss_pred CEEEeecCCCc-------cccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCCHHHHHHHHhccH
Confidence 12222111110 1125899999999999999999999999999999999873 332 12222221111
Q ss_pred ---------------------------------------------------------------------HH---------
Q 011700 212 ---------------------------------------------------------------------EY--------- 213 (479)
Q Consensus 212 ---------------------------------------------------------------------~~--------- 213 (479)
+.
T Consensus 236 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dp~ 315 (540)
T 3gwf_A 236 RIWERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIEDPE 315 (540)
T ss_dssp HHHHHHHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHhccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHH
Confidence 00
Q ss_pred ------------------------HHhCCcEEEc--CCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhh
Q 011700 214 ------------------------YKSKGVKFVK--GTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF 267 (479)
Q Consensus 214 ------------------------l~~~GV~i~~--~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~ 267 (479)
+.+.+|+++. +..|++|++ + .|.+.||+++++|.||+|||+++++.++
T Consensus 316 ~~~~l~P~~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~--~----gv~~~dG~~~~~DvIV~ATGf~~~~~~~ 389 (540)
T 3gwf_A 316 TARKLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTA--K----GVVTEDGVLHELDVLVFATGFDAVDGNY 389 (540)
T ss_dssp HHHHHCCCSCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECS--S----EEEETTCCEEECSEEEECCCBSCSSHHH
T ss_pred HHHhCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEec--C----eEEcCCCCEEECCEEEECCccCccccCc
Confidence 1145788885 678888864 3 4888999999999999999999998544
Q ss_pred hc-ccccccCcEEEcC----------cccC-CCCCeEEE-eeeccccccccCceeecccHHHHHHHHHHHHHHHc
Q 011700 268 EG-QLTLEKGGIKVTG----------RLQS-SNSSVYAV-GDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 329 (479)
Q Consensus 268 ~~-~~~~~~g~i~Vd~----------~l~t-~~~~IyA~-GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 329 (479)
.. .+. ..+++.+++ .+.+ +.||+|.+ |..+... .....+..|++++++.|.
T Consensus 390 ~~~~i~-g~~G~~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~~~----------s~~~~~e~q~~~i~~~i~ 453 (540)
T 3gwf_A 390 RRIEIR-GRDGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGPFT----------NLPPSIETQVEWISDTIG 453 (540)
T ss_dssp HTSEEE-CGGGCBHHHHTSSSCCCBTTTBCTTCTTEEESSCSSCBCS----------CHHHHHHHHHHHHHHHHH
T ss_pred CcceEE-CCCCcCHHHhhccChhhccccccCCCCceEEEecCCCCCc----------cHHHHHHHHHHHHHHHHH
Confidence 32 111 122333332 2333 78999999 7765411 234566778888887774
No 90
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=99.93 E-value=1.6e-25 Score=233.85 Aligned_cols=182 Identities=18% Similarity=0.215 Sum_probs=119.0
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-------CCCC--cccccccCCCCC------CCCCCcccc
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP-------YERP--ALSKGYLLPEAP------ARLPSFHTC 68 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~-------~~~~--~l~~~~~~~~~~------~~~~~~~~~ 68 (479)
++||||||||+||+++|..|++.|.+ |+|||+++... |... ......+..... ..+... ..
T Consensus 21 ~~dVvIIGaG~aGl~aA~~L~~~G~~---v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~-~~ 96 (549)
T 4ap3_A 21 SYDVVVVGAGIAGLYAIHRFRSQGLT---VRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEK-YA 96 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSS-SC
T ss_pred CCCEEEECchHHHHHHHHHHHhCCCC---EEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccC-CC
Confidence 57999999999999999999998886 99999976421 1100 000000000000 000000 00
Q ss_pred cCCcccCCCHhHHHHcCc--EEEeCceEEEEECCCc----EEEeCCCcEEEeceEEeecC--CCcccccccCCCCCCCCC
Q 011700 69 VGANEERLTPKWYNEHGI--ELVLGTRVKSADVRRK----TLVTATGETISYKILIIATG--ARALKLEEFGLSGSDAEN 140 (479)
Q Consensus 69 ~~~~~~~~~~~~~~~~gv--~~~~~~~v~~i~~~~~----~v~~~~g~~~~~d~lviAtG--~~~~~~~~~g~~g~~~~~ 140 (479)
........+.+.++++++ +++.+++|++++.+.. +|.+.+|+++.||+||+||| +.|..|+++|+.... ..
T Consensus 97 ~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~-g~ 175 (549)
T 4ap3_A 97 TQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPAFDGLDRFT-GD 175 (549)
T ss_dssp BHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCCCTTGGGCC-SE
T ss_pred CHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCC-Cc
Confidence 001111223344566777 7888999999986655 78888898999999999999 788888774332211 11
Q ss_pred eEEecCHH-HHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700 141 VCYLRDLA-DANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 197 (479)
Q Consensus 141 v~~~~~~~-~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 197 (479)
+++..... +.. ...+++|+|||+|.+|+|+|..|++.+.+||++.|.+.+
T Consensus 176 ~~~~~~~~~~~~-------~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~ 226 (549)
T 4ap3_A 176 IVHTARWPHDGV-------DFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANY 226 (549)
T ss_dssp EEEGGGCCTTCC-------CCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred eEEecccccccc-------ccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCc
Confidence 22222111 111 125899999999999999999999999999999999874
No 91
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=99.93 E-value=1e-25 Score=235.13 Aligned_cols=306 Identities=15% Similarity=0.162 Sum_probs=181.4
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-------CCC--Cccc---ccccCCCCC---CCCCCcccc
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP-------YER--PALS---KGYLLPEAP---ARLPSFHTC 68 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~-------~~~--~~l~---~~~~~~~~~---~~~~~~~~~ 68 (479)
++||||||||+||+++|..|++.|.+ |+|||+++... |.. +... ..+...... ..++.. ..
T Consensus 9 ~~dVvIIGaG~aGl~aA~~L~~~g~~---v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~-~~ 84 (545)
T 3uox_A 9 ALDAVVIGAGVTGIYQAFLINQAGMK---VLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSEN-FA 84 (545)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBS-SC
T ss_pred CCCEEEECccHHHHHHHHHHHhCCCC---EEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCcccc-CC
Confidence 57999999999999999999998886 99999986421 110 0000 000000000 000000 00
Q ss_pred cCCcccCCCHhHHHHcCc--EEEeCceEEEEECCCc----EEEeCCCcEEEeceEEeecC--CCcccccccCCCCCCCCC
Q 011700 69 VGANEERLTPKWYNEHGI--ELVLGTRVKSADVRRK----TLVTATGETISYKILIIATG--ARALKLEEFGLSGSDAEN 140 (479)
Q Consensus 69 ~~~~~~~~~~~~~~~~gv--~~~~~~~v~~i~~~~~----~v~~~~g~~~~~d~lviAtG--~~~~~~~~~g~~g~~~~~ 140 (479)
........+....+++++ ++..+++|.+++.+.. .|.+.+|++++||+||+||| +.|..|+++|++......
T Consensus 85 ~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~ 164 (545)
T 3uox_A 85 SQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIKGIDSFKGES 164 (545)
T ss_dssp BHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CCCTTGGGCCSEE
T ss_pred CHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCCCCCccccCCCe
Confidence 001111223344556676 6788889999986654 78888898999999999999 888888874432221122
Q ss_pred eEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc-cccc---CCHHHHHHHH-----
Q 011700 141 VCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC-MARL---FTPKIASYYE----- 211 (479)
Q Consensus 141 v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~-l~~~---~~~~~~~~~~----- 211 (479)
+++.+...+.....+ .....+++|+|||+|.+|+|+|..|++.+.+||++.|.+++ ++.. +++...+.++
T Consensus 165 ~h~~~~~~~~~~~~~-~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~p~ 243 (545)
T 3uox_A 165 FHSSRWPTDAEGAPK-GVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWCTPLGNSPMSKEKMDSLRNRYPT 243 (545)
T ss_dssp EEGGGCCBCTTSCBS-CCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCCCEECCCCBCCHHHHHHHHHTHHH
T ss_pred EEccccccccccccc-ccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCccccCCcCCCCHHHHHHHHhhhHH
Confidence 222221111000000 01125799999999999999999999999999999999874 3321 1111111110
Q ss_pred --------------------------------------------------------------------------------
Q 011700 212 -------------------------------------------------------------------------------- 211 (479)
Q Consensus 212 -------------------------------------------------------------------------------- 211 (479)
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~ 323 (545)
T 3uox_A 244 ILEYVKSTDTAFPYHRDPRKGTDVSESERDAFFEELYRQPGYGIWLSGFRDLLLNKESNKFLADFVAKKIRQRVKDPVVA 323 (545)
T ss_dssp HHHHHTTSSSSSSCCCBSSCGGGSCHHHHHHHHHHHHHSSSTHHHHTSBTTTTTCHHHHHHHHHHHHHHHHHHCSCHHHH
T ss_pred HHHHHhhcccccccccccchhhhCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence
Q ss_pred ----------------------HHHHhCCcEEEc--CCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhh
Q 011700 212 ----------------------EYYKSKGVKFVK--GTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF 267 (479)
Q Consensus 212 ----------------------~~l~~~GV~i~~--~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~ 267 (479)
+.|.+.+|+++. +..|++|++ + .|.+.|| ++++|.||+|||+++++.++
T Consensus 324 ~~l~P~~~~~g~kR~~~~~~y~~al~~~nV~lv~~~~~~I~~it~--~----gv~~~dG-~~~~D~IV~ATGf~~~~~~~ 396 (545)
T 3uox_A 324 EKLIPKDHPFGAKRVPMETNYYETYNRDNVHLVDIREAPIQEVTP--E----GIKTADA-AYDLDVIIYATGFDAVTGSL 396 (545)
T ss_dssp HHTSCSSSCTTSSCCCEESSHHHHTTSTTEEEEETTTSCEEEEET--T----EEEESSC-EEECSEEEECCCCBSSSCSC
T ss_pred HhCCCCCCCCCCCccCCCccHHHHhcCCCEEEEecCCCCceEEcc--C----eEEeCCC-eeecCEEEECCccccccccC
Confidence 112223788885 678888875 3 4788999 99999999999999876543
Q ss_pred hccccc-ccCcEEEcCc-----------ccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHc
Q 011700 268 EGQLTL-EKGGIKVTGR-----------LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 329 (479)
Q Consensus 268 ~~~~~~-~~g~i~Vd~~-----------l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 329 (479)
.. +.. ..++..+++. +-.+.||+|.+.- |+...+.. .....+..|++++++.|.
T Consensus 397 ~~-~~i~g~~G~~l~~~w~~~~~~y~g~~~~gfPN~f~~~g----p~~~~~~~---s~~~~~e~~~~~i~~~i~ 462 (545)
T 3uox_A 397 DR-IDIRGKDNVRLIDAWAEGPSTYLGLQARGFPNFFTLVG----PHNGSTFC---NVGVCGGLQAEWVLRMIS 462 (545)
T ss_dssp TT-SEEECGGGCBHHHHTTTSCCCBTTTBCTTCTTEEECSS----GGGTGGGS---CHHHHHHHHHHHHHHHHH
T ss_pred CC-ceEECCCCccHHHhhccccceeeccccCCCCcEEEEeC----CCCCCccc---cHHHHHHHHHHHHHHHHH
Confidence 21 112 2233444322 1227899998732 22111111 234556778888888774
No 92
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=99.92 E-value=2.2e-24 Score=225.79 Aligned_cols=297 Identities=14% Similarity=0.184 Sum_probs=180.5
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-------CCCCccc-ccccCCCC--C-----CCCCCcccc
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP-------YERPALS-KGYLLPEA--P-----ARLPSFHTC 68 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~-------~~~~~l~-~~~~~~~~--~-----~~~~~~~~~ 68 (479)
++||+|||||++|+++|..|++.|++ |+|+|+++... |....+. ........ . ..++.. ..
T Consensus 16 ~~dVvIIGaG~aGl~aA~~L~~~G~~---v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~-~~ 91 (542)
T 1w4x_A 16 EVDVLVVGAGFSGLYALYRLRELGRS---VHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTER-YA 91 (542)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBS-SC
T ss_pred CCCEEEECccHHHHHHHHHHHhCCCC---EEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccc-cC
Confidence 57999999999999999999999886 99999986421 1110000 00000000 0 000000 00
Q ss_pred cCCcccCCCHhHHHHcC--cEEEeCceEEEEECCC----cEEEeCCCcEEEeceEEeecC--CCcccccccCCCCCCC-C
Q 011700 69 VGANEERLTPKWYNEHG--IELVLGTRVKSADVRR----KTLVTATGETISYKILIIATG--ARALKLEEFGLSGSDA-E 139 (479)
Q Consensus 69 ~~~~~~~~~~~~~~~~g--v~~~~~~~v~~i~~~~----~~v~~~~g~~~~~d~lviAtG--~~~~~~~~~g~~g~~~-~ 139 (479)
........+....++.+ .+++.+++|.+++.+. .+|.+.+|+++++|+||+||| +.|+.|++ +|.+. .
T Consensus 92 ~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~~p~i---~G~~~f~ 168 (542)
T 1w4x_A 92 SQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPNF---PGLKDFA 168 (542)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCCCCCC---TTGGGCC
T ss_pred CHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCCCCCC---CCcccCC
Confidence 00001111222234444 5688888999887543 367777888899999999999 56777776 44331 2
Q ss_pred C-eEEecCHH-HHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc-cc---cCCHHHH------
Q 011700 140 N-VCYLRDLA-DANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-AR---LFTPKIA------ 207 (479)
Q Consensus 140 ~-v~~~~~~~-~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-~~---~~~~~~~------ 207 (479)
+ +++..... +. ....+++++|||+|.+|+|++..|++.+.+|+++.|.+.+. +. .++++..
T Consensus 169 G~~~hs~~~~~~~-------~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~~~~~~~~~~~~~~~ 241 (542)
T 1w4x_A 169 GNLYHTGNWPHEP-------VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFLADLKKR 241 (542)
T ss_dssp SEEEEGGGCCSSC-------CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCCBCCHHHHHHHHTT
T ss_pred CceEECCCCCCch-------hccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCCCCCCHHHHHHHHhh
Confidence 2 22211110 10 01258999999999999999999999999999999887652 21 0111111
Q ss_pred -----------------------------------------------------------------HHHHHHH--------
Q 011700 208 -----------------------------------------------------------------SYYEEYY-------- 214 (479)
Q Consensus 208 -----------------------------------------------------------------~~~~~~l-------- 214 (479)
+.+.+.+
T Consensus 242 ~p~l~~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (542)
T 1w4x_A 242 YAEFREESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPE 321 (542)
T ss_dssp HHHHHHHHHTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHHHHHHHHHCSSHH
T ss_pred CHHHHHHHHhhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCHH
Confidence 0011111
Q ss_pred ---------------------------HhCCcEEE--cCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700 215 ---------------------------KSKGVKFV--KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 215 ---------------------------~~~GV~i~--~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~ 265 (479)
.+.+|+++ .+..|++++. + .|.+.| +++++|.||+|||+++++.
T Consensus 322 ~~~~l~P~~~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~--~----gv~~~d-~~~~~D~ii~atG~~~~~~ 394 (542)
T 1w4x_A 322 VAERLVPKGYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITP--R----GVRTSE-REYELDSLVLATGFDALTG 394 (542)
T ss_dssp HHHHHSCCSSCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECS--S----EEEESS-CEEECSEEEECCCCCCTTH
T ss_pred HHHhcCCCCCCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEcC--C----eEEeCC-eEEecCEEEEcCCcccccc
Confidence 11346766 3567888853 2 477888 8999999999999999877
Q ss_pred hhhccccc-ccCcEEEcCcc----------cC-CCCCeEEE-eeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700 266 LFEGQLTL-EKGGIKVTGRL----------QS-SNSSVYAV-GDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 266 l~~~~~~~-~~g~i~Vd~~l----------~t-~~~~IyA~-GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~ 330 (479)
++.. +.. ..+++.+++.. .. ..||+|++ |+.+..... .....|..|+++++++|..
T Consensus 395 ~~~~-~~i~g~~G~~l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~~~~--------~~~~~~e~q~~~ia~~i~~ 463 (542)
T 1w4x_A 395 ALFK-IDIRGVGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALS--------NMLVSIEQHVEWVTDHIAY 463 (542)
T ss_dssp HHHT-SEEECGGGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGGS--------CHHHHHHHHHHHHHHHHHH
T ss_pred CcCc-eeeECCCCCCHHHhhcCchheecccccCCCCceEEEcCCCCCcccc--------cHHHHHHHHHHHHHHHHHH
Confidence 6543 222 23345555432 22 56777776 766432110 2236788899999999864
No 93
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=99.87 E-value=1.1e-21 Score=175.15 Aligned_cols=154 Identities=16% Similarity=0.121 Sum_probs=128.5
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc--------cC-----CHHHHHHHHHHHHhCCcEEEcCCceEEE
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------LF-----TPKIASYYEEYYKSKGVKFVKGTVLSSF 230 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~--------~~-----~~~~~~~~~~~l~~~GV~i~~~~~v~~i 230 (479)
+++|||+|++|+|+|..|.+.|.+|+++++.+.++.+ .+ ++++.+.+.+.+++.||+++.+ +++++
T Consensus 3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i 81 (180)
T 2ywl_A 3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGV 81 (180)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEE
T ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEE
Confidence 5899999999999999999999999999998766531 12 4788999999999999999999 99999
Q ss_pred EEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhhcccccccCcEEEcCcccCCCCCeEEEeeeccccccccCceee
Q 011700 231 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRR 310 (479)
Q Consensus 231 ~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~ 310 (479)
+.++++ ..+.+.+| ++++|.||+|+|.+|+. ....++..++|.|.||+++||+.|+|||+|||+..+.
T Consensus 82 ~~~~~~--~~v~~~~g-~i~ad~vI~A~G~~~~~-~~~~g~~~~~g~i~vd~~~~t~~~~i~a~GD~~~~~~-------- 149 (180)
T 2ywl_A 82 RDMGGV--FEVETEEG-VEKAERLLLCTHKDPTL-PSLLGLTRRGAYIDTDEGGRTSYPRVYAAGVARGKVP-------- 149 (180)
T ss_dssp EECSSS--EEEECSSC-EEEEEEEEECCTTCCHH-HHHHTCCEETTEECCCTTCBCSSTTEEECGGGGTCCS--------
T ss_pred EEcCCE--EEEEECCC-EEEECEEEECCCCCCCc-cccCCCCccCceEEeCCCCCcCCCCEEEeecccCcch--------
Confidence 874333 35777888 89999999999999854 1223444457789999999999999999999998753
Q ss_pred cccHHHHHHHHHHHHHHHcCC
Q 011700 311 LEHVDSARKSAKHAVAAIMEP 331 (479)
Q Consensus 311 ~~~~~~A~~~g~~aa~~i~~~ 331 (479)
+++..|..||+.||.||.+.
T Consensus 150 -~~~~~A~~~g~~aa~~i~~~ 169 (180)
T 2ywl_A 150 -GHAIISAGDGAYVAVHLVSD 169 (180)
T ss_dssp -CCHHHHHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHhHHHHHHHHHHH
Confidence 25778999999999999853
No 94
>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*
Probab=99.81 E-value=9.1e-19 Score=181.17 Aligned_cols=289 Identities=13% Similarity=0.123 Sum_probs=162.5
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCC-----------CcEEEEcCCCCCCCCCCcccc----------cccCCCCCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPP-----------GELCIISEEPVAPYERPALSK----------GYLLPEAPARL 62 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~-----------~~V~lie~~~~~~~~~~~l~~----------~~~~~~~~~~~ 62 (479)
.|||||||+||+||++|..|.+.+.+. ...+.+|+.+.+.|+..++.. .+.....+...
T Consensus 39 i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~s~ 118 (501)
T 4b63_A 39 LHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPRSS 118 (501)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTTCT
T ss_pred cCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCCCc
Confidence 379999999999999999998765431 236788988765554322111 11111111000
Q ss_pred CCcc---c---------------ccCCcccCCCHhHHHHcCcEEEeCceEEEEECCC----------cEEEeCCC-----
Q 011700 63 PSFH---T---------------CVGANEERLTPKWYNEHGIELVLGTRVKSADVRR----------KTLVTATG----- 109 (479)
Q Consensus 63 ~~~~---~---------------~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~----------~~v~~~~g----- 109 (479)
-.|. . ....+...++..+.++.+..+..+++|+++.... .+|++.++
T Consensus 119 ~sf~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~ 198 (501)
T 4b63_A 119 FTFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEI 198 (501)
T ss_dssp TSHHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCE
T ss_pred cchHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceE
Confidence 0000 0 0000000111122234456678888999886422 34555432
Q ss_pred cEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHH-HHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhC--CC
Q 011700 110 ETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADA-NRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN--KI 186 (479)
Q Consensus 110 ~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~-~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~--g~ 186 (479)
+++.++.||+|||..|..|... +.. ..+++...+.+. +.+. -....+|+|+|||+|.+|+|++..|.+. +.
T Consensus 199 ~~~~ar~vVlatG~~P~iP~~~---~~~-g~v~Hss~y~~~~~~~~--~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~ 272 (501)
T 4b63_A 199 SARRTRKVVIAIGGTAKMPSGL---PQD-PRIIHSSKYCTTLPALL--KDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNS 272 (501)
T ss_dssp EEEEEEEEEECCCCEECCCTTS---CCC-TTEEEGGGHHHHHHHHS--CCTTSCCEEEEECCSHHHHHHHHHHHHHSTTC
T ss_pred EEEEeCEEEECcCCCCCCCCCC---CCC-cceeeccccccchhhcc--ccccCCcEEEEECCcHHHHHHHHHHHhcCCCc
Confidence 4689999999999988877653 222 356655544322 1110 1123689999999999999999999864 78
Q ss_pred eEEEEeecCccccc--------cCCHHH-----------HHH--------------------HHHHH-Hh---------C
Q 011700 187 NVTMVFPEAHCMAR--------LFTPKI-----------ASY--------------------YEEYY-KS---------K 217 (479)
Q Consensus 187 ~Vtlv~~~~~~l~~--------~~~~~~-----------~~~--------------------~~~~l-~~---------~ 217 (479)
+|+++.|++.+.+. .++++. ... +.+.+ ++ .
T Consensus 273 ~v~~~~R~~~~~p~~~s~~~~~~f~p~~~~~f~~l~~~~r~~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~~~~~~~~~ 352 (501)
T 4b63_A 273 RTTLIMRDSAMRPSDDSPFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQW 352 (501)
T ss_dssp EEEEECSSSSCCBCCCCTTGGGGGSTTHHHHHHTSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCSCGGGC
T ss_pred eEEEEeCCCccccccccccchhhcCHHHHHHHHhCCHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhccCCCccccc
Confidence 99999998754332 111111 111 11111 00 1
Q ss_pred CcEEEcCCceEEEEEcCC-CcE-----------EEEEeCCCcEEeccEEEEecCCCCChh--hhhc--cccc-ccCcEEE
Q 011700 218 GVKFVKGTVLSSFDVDSN-GKV-----------VAVNLRDGNRLPTDMVVVGIGIRPNTS--LFEG--QLTL-EKGGIKV 280 (479)
Q Consensus 218 GV~i~~~~~v~~i~~~~~-g~v-----------~~v~~~~g~~i~~D~Vi~a~G~~p~~~--l~~~--~~~~-~~g~i~V 280 (479)
...+..+..+..++.... +++ ..+.+.+|+++++|.||+|||++|+.. |+.. .+.. .+|...|
T Consensus 353 ~~~l~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~v~~~dg~~~~~D~VI~ATGy~~~~p~~L~~~~~~l~~d~~g~~~v 432 (501)
T 4b63_A 353 QHRILPERKITRVEHHGPQSRMRIHLKSSKPESEGAANDVKETLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWKP 432 (501)
T ss_dssp SSEEECSEEEEEEECCSSSSCEEEEEEESCC--------CCCEEEESEEEECCCEECCTHHHHTGGGGGGSSTTCCSCCB
T ss_pred ceeecCCcceeeeeecCCCCeEEEEeeeeEEeCCeeEeCCCeEEECCEEEECcCCCCCCcchhcchhhhcCcCcCCCeee
Confidence 124555555555543221 111 134556888999999999999998864 2221 2332 4677888
Q ss_pred cCcccC--------CCCCeEEEeeec
Q 011700 281 TGRLQS--------SNSSVYAVGDVA 298 (479)
Q Consensus 281 d~~l~t--------~~~~IyA~GD~~ 298 (479)
+..++. ..++||+.|-+-
T Consensus 433 ~rdy~~~~~~~~~~~~~~i~~qg~~~ 458 (501)
T 4b63_A 433 HRDYRVEMDPSKVSSEAGIWLQGCNE 458 (501)
T ss_dssp CTTSBBCCCTTTBCTTCEEEECSCCH
T ss_pred CCCcEEeecCCccCCCceEEecCCCc
Confidence 876543 246799999543
No 95
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=99.74 E-value=2.9e-19 Score=183.54 Aligned_cols=222 Identities=15% Similarity=0.103 Sum_probs=129.2
Q ss_pred HHHHcCcEEEeCceEEEEECCCcEE---EeC-CCcEEEeceEEeecCCCcccccccC-CCCCCCCCeEEecCHHHHHHHH
Q 011700 80 WYNEHGIELVLGTRVKSADVRRKTL---VTA-TGETISYKILIIATGARALKLEEFG-LSGSDAENVCYLRDLADANRLV 154 (479)
Q Consensus 80 ~~~~~gv~~~~~~~v~~i~~~~~~v---~~~-~g~~~~~d~lviAtG~~~~~~~~~g-~~g~~~~~v~~~~~~~~~~~l~ 154 (479)
.+++.|++++.++.| ++..++..+ .+. ++.++.+|.||+|||+.+..++... -++.+.++ +.-+.+.-
T Consensus 128 ~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~~~~~~~~~~~~tGdg------i~~a~~aG 200 (472)
T 2e5v_A 128 LAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGLVEDVDKLVLATGGYSYLYEYSSTQSTNIGDG------MAIAFKAG 200 (472)
T ss_dssp HHHHTTCCEECCCEE-EEEEETTEEEEEEETTTEEECCCSEEEECCCCCGGGSSSBSSCTTCSCHH------HHHHHHTT
T ss_pred HHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCCeEEeeeEEECCCCCcccCccccCCCCCchHH------HHHHHHcC
Confidence 345679999999989 887665544 332 2335789999999999887655311 01111111 10010000
Q ss_pred HHHhcC---CC-CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHH--------HHHHHHHHHhCCcEEE
Q 011700 155 NVMKSC---SG-GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI--------ASYYEEYYKSKGVKFV 222 (479)
Q Consensus 155 ~~l~~~---~~-~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~--------~~~~~~~l~~~GV~i~ 222 (479)
..+... .. ...+++|+| +++++..++..|..+ +..+.++++++ ++++. +..+.+.+++.|. ++
T Consensus 201 a~~~d~e~~q~~p~~~~~ggg--~~~~ae~~~~~G~~~-v~~~g~rf~~~-~~~~~el~~rd~v~~~i~~~~~~~~~-v~ 275 (472)
T 2e5v_A 201 TILADMEFVQFHPTVTSLDGE--VFLLTETLRGEGAQI-INENGERFLFN-YDKRGELAPRDILSRAIYIEMLKGHK-VF 275 (472)
T ss_dssp CCEECTTCEEEEEEEECGGGC--CEECCTHHHHTTCEE-EETTCCCGGGG-TCTTGGGSCHHHHHHHHHHHHHHTCC-EE
T ss_pred CCEeCCcceEEEeEEEccCCC--ceeeehhhcCCceEE-ECCCCCCCCcc-CCcccCcCchhHHHHHHHHHHHhCCc-EE
Confidence 000000 01 123455766 788888899999888 77888888876 44433 5666666766653 22
Q ss_pred cCCceEEEEEcCCCcEEEEEeCCCcEEe-ccEEEEecCCCCChhhhhcc--cccccCcEEEcCcccCCCCCeEEEeeecc
Q 011700 223 KGTVLSSFDVDSNGKVVAVNLRDGNRLP-TDMVVVGIGIRPNTSLFEGQ--LTLEKGGIKVTGRLQSSNSSVYAVGDVAA 299 (479)
Q Consensus 223 ~~~~v~~i~~~~~g~v~~v~~~~g~~i~-~D~Vi~a~G~~p~~~l~~~~--~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~ 299 (479)
++... + +. + .++++ .|.++++.|..|+ ++++.. .....|+|.||+++||++|+|||+|||++
T Consensus 276 ld~~~--~----~~------~--~~~~~~~~~~~~~~G~dp~-~~i~v~p~~~~~~GGI~vd~~~~t~ipgLyAaGd~a~ 340 (472)
T 2e5v_A 276 IDLSK--I----ED------F--ERKFPVVAKYLARHGHNYK-VKIPIFPAAHFVDGGIRVNIRGESNIVNLYAIGEVSD 340 (472)
T ss_dssp EECTT--C----TT------H--HHHCHHHHHHHHHTTCCTT-SCEECEEEEEEESCEEECCTTCBCSSBTEEECGGGEE
T ss_pred Eeccc--h----HH------H--HHHhHHHHHHHHHhCcCcc-cceEeehhhceeCCCeEECCCCccccCCEEecchhcc
Confidence 22110 0 00 0 02333 4777888999999 654422 11257999999999999999999999998
Q ss_pred ccccccCceee-cccHHHHHHHHHHHHHHHcC
Q 011700 300 FPLKLLGETRR-LEHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 300 ~~~~~~g~~~~-~~~~~~A~~~g~~aa~~i~~ 330 (479)
... +|..+. -.....+...|+.|++++.+
T Consensus 341 ~~~--hg~~rl~~~sl~~~~v~G~~a~~~~a~ 370 (472)
T 2e5v_A 341 SGL--HGANRLASNSLLEGLVFGINLPRYVDS 370 (472)
T ss_dssp CSS--STTSCCTTHHHHHHHHHHHHGGGTTTS
T ss_pred ccc--CCCCCCCcccHHHHHHHHHHHHHHHHh
Confidence 321 122110 01233444556666666654
No 96
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=99.59 E-value=6.4e-15 Score=136.71 Aligned_cols=155 Identities=14% Similarity=0.173 Sum_probs=111.5
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc-----------------ccccc------CCHHHHHHHHHHHHhC-C
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH-----------------CMARL------FTPKIASYYEEYYKSK-G 218 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-----------------~l~~~------~~~~~~~~~~~~l~~~-G 218 (479)
-+++|||+|+.|+++|..|++.|.+|+++++... ++... ...++.+.+.+.+++. |
T Consensus 4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~~~g 83 (232)
T 2cul_A 4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRP 83 (232)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTT
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHcCCC
Confidence 4799999999999999999999999999998721 11110 0136677888888887 9
Q ss_pred cEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh--------------------hhh----cccccc
Q 011700 219 VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS--------------------LFE----GQLTLE 274 (479)
Q Consensus 219 V~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~--------------------l~~----~~~~~~ 274 (479)
++++ ++++++++. +++.+..+.+.+|+++++|.||+|+|..++.. +.+ .++...
T Consensus 84 v~i~-~~~v~~i~~-~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~~~g~~~~ 161 (232)
T 2cul_A 84 LHLF-QATATGLLL-EGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLGFRFV 161 (232)
T ss_dssp EEEE-ECCEEEEEE-ETTEEEEEEETTSCCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHHHTTCCEE
T ss_pred cEEE-EeEEEEEEE-eCCEEEEEEECCCCEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHHhCCCeEE
Confidence 9999 468999987 35666678888898999999999999954422 211 112111
Q ss_pred cCc----------------EEEc-------CcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700 275 KGG----------------IKVT-------GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 330 (479)
Q Consensus 275 ~g~----------------i~Vd-------~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~ 330 (479)
.+. ..+. ...+|++|+|||+|||+ .. ..+..|..||+.+|.+|..
T Consensus 162 ~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~~----------g~~~~~~~~g~~~a~~i~~ 229 (232)
T 2cul_A 162 EREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-RE----------GDYARMSEEGKRLAEHLLH 229 (232)
T ss_dssp EEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-SC----------CCHHHHHHHHHHHHHHHHH
T ss_pred ccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-cC----------ccHHHHHHHHHHHHHHHHh
Confidence 100 0111 01237999999999999 43 3567789999999999864
No 97
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=99.59 E-value=5.6e-18 Score=165.77 Aligned_cols=252 Identities=12% Similarity=-0.002 Sum_probs=145.0
Q ss_pred cCeEEEECCchHHHHHHHHHHH--cCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTK--RGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWY 81 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~--~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (479)
++||+|||||||||+||.+|++ .|++ |+|||+++.... .+...++ .++. .........++
T Consensus 65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~---V~viEk~~~~GG--~~~~~~~-------~~~~------~~l~~~~~~~~ 126 (326)
T 3fpz_A 65 VSDVIIVGAGSSGLSAAYVIAKNRPDLK---VCIIESSVAPGG--GSWLGGQ-------LFSA------MVMRKPAHLFL 126 (326)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSC---EEEECSSSSCCT--TTTCCST-------TCCC------EEEETTTHHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCCCe---EEEEECCCCCCc--eEEeCCc-------cCCH------HHHHHHHHHHH
Confidence 4799999999999999999975 4777 999999864211 1111111 1111 11223456677
Q ss_pred HHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCC---CCeEEecCHHHHHHHHHHHh
Q 011700 82 NEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDA---ENVCYLRDLADANRLVNVMK 158 (479)
Q Consensus 82 ~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~---~~v~~~~~~~~~~~l~~~l~ 158 (479)
++.|+++..+. ......+.++++++..++.++. +|.+. ..+..+..... .
T Consensus 127 ~e~Gv~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~--------~ 179 (326)
T 3fpz_A 127 QELEIPYEDEG----------------DYVVVKHAALFISTVLSKVLQL---PNVKLFNATCVEDLVTRPP--------T 179 (326)
T ss_dssp HHTTCCCEECS----------------SEEEESCHHHHHHHHHHHHHTS---TTEEEETTEEEEEEEEESS--------C
T ss_pred HHcCCEEEECC----------------cceecceeEEEEcchhhhcccc---ccceeecccccceeeccCC--------c
Confidence 88888776542 1223455566677777666655 33221 11111111000 0
Q ss_pred cCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcE
Q 011700 159 SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV 238 (479)
Q Consensus 159 ~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v 238 (479)
...+++++++|+|.++++.|..+...+.++++..+........ . +...... +..... .++..
T Consensus 180 ~~~~~~v~viggg~~av~~a~~~~~~~~~v~i~~~~~~~~~~~-~----------~~~~~~~------~~~~~g-~~~~~ 241 (326)
T 3fpz_A 180 EKGEVTVAGVVTNWTLVTQAHGTQCAMDPNVIELAGYKNDGTR-D----------LSQKHGV------ILSTTG-HDGPF 241 (326)
T ss_dssp SSSSCEEEEEEEEEHHHHTCTTSSSCCCCEEEEESCBCTTSSB-C----------TTSCCCE------EEECCC-SCSSS
T ss_pred ccCCCEEEEEccCceeeehhhhhhhccCcEEEEeecccccccc-c----------ceeecce------EEEEec-ceeeE
Confidence 1247899999999999999999999999999987765432210 0 0000000 111111 11110
Q ss_pred EEEEeCCCcEEeccEEEEecCCCCChhhhhcccccccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHH
Q 011700 239 VAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSAR 318 (479)
Q Consensus 239 ~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~ 318 (479)
. .......+++|.+..+.|.+|..... ..+.|.+|+.++|++|+|||+||++......+ +.=+....++
T Consensus 242 ~--~~~~~~~~~~~~~~~~~g~~~~~~~~------~e~~iv~~~~~~t~vpGv~aaGDaa~~v~g~~---rmGp~~g~mi 310 (326)
T 3fpz_A 242 G--AFCAKRIVDIDQNQKLGGMKGLDMNH------AEHDVVIHSGAYAGVDNMYFAGMEVAELDGLN---RMGPTFGAMA 310 (326)
T ss_dssp C--SHHHHHHHHHCTTCCCCCCCCBCHHH------HHHHHHHHCEECTTSBTEEECTHHHHHHHTCC---BCCSCCHHHH
T ss_pred e--ecceeEEEecCceeeecceecccccc------cCCeEEECCCeEECCCCEEEEchHhccccCCC---cCchHHHHHH
Confidence 0 00011245667777777877654322 23567788899999999999999986432211 0002233456
Q ss_pred HHHHHHHHHHc
Q 011700 319 KSAKHAVAAIM 329 (479)
Q Consensus 319 ~~g~~aa~~i~ 329 (479)
..|+.||+.|.
T Consensus 311 ~SG~~AAe~I~ 321 (326)
T 3fpz_A 311 LSGVHAAEQIL 321 (326)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67999988875
No 98
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=99.58 E-value=2.1e-16 Score=158.75 Aligned_cols=121 Identities=18% Similarity=0.262 Sum_probs=74.9
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-------CCCcccc------cccCCCCCC-------
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPY-------ERPALSK------GYLLPEAPA------- 60 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~-------~~~~l~~------~~~~~~~~~------- 60 (479)
||+++||+|||||++|++||..|+++|.+ |+|+|+.+.... .++.+.. .++. ....
T Consensus 1 MM~~~dViIIGgG~aGl~aA~~la~~G~~---V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~-~~~~~~~~~l~ 76 (401)
T 2gqf_A 1 MSQYSENIIIGAGAAGLFCAAQLAKLGKS---VTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLS-QNPHFVKSALA 76 (401)
T ss_dssp CEEECSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEEC-SCTTSTHHHHH
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhCCCC---EEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhcc-CCHHHHHHHHH
Confidence 78889999999999999999999999987 999999864210 0111100 0000 0000
Q ss_pred --------------CCCCc------ccc--cCCcccCCCHhHHHHcCcEEEeCceEEEEECC----Cc--EEEeCCCcEE
Q 011700 61 --------------RLPSF------HTC--VGANEERLTPKWYNEHGIELVLGTRVKSADVR----RK--TLVTATGETI 112 (479)
Q Consensus 61 --------------~~~~~------~~~--~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~----~~--~v~~~~g~~~ 112 (479)
.++.. .+. ........+.+.+++.|++++.+++|.++..+ .. .+.+.++ ++
T Consensus 77 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~i 155 (401)
T 2gqf_A 77 RYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST-QW 155 (401)
T ss_dssp HSCHHHHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE-EE
T ss_pred hCCHHHHHHHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-EE
Confidence 00000 000 00000011233455679999999999988744 22 4555555 79
Q ss_pred EeceEEeecCCCcc
Q 011700 113 SYKILIIATGARAL 126 (479)
Q Consensus 113 ~~d~lviAtG~~~~ 126 (479)
++|+||+|||+.+.
T Consensus 156 ~ad~VVlAtG~~s~ 169 (401)
T 2gqf_A 156 QCKNLIVATGGLSM 169 (401)
T ss_dssp EESEEEECCCCSSC
T ss_pred ECCEEEECCCCccC
Confidence 99999999998873
No 99
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=99.31 E-value=3.6e-12 Score=129.23 Aligned_cols=94 Identities=17% Similarity=0.246 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecC--------CCCChhhhhcc-cc-
Q 011700 203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG--------IRPNTSLFEGQ-LT- 272 (479)
Q Consensus 203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G--------~~p~~~l~~~~-~~- 272 (479)
+..+...+...+++.| +++++++|++|+.+++ .+ .|.+.+|+++.+|.||+|+| +.|+.+..... +.
T Consensus 203 ~~g~~~l~~~~~~~~g-~i~~~~~V~~i~~~~~-~v-~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~ 279 (431)
T 3k7m_X 203 SNGSADLVDAMSQEIP-EIRLQTVVTGIDQSGD-VV-NVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVIEE 279 (431)
T ss_dssp TTCTHHHHHHHHTTCS-CEESSCCEEEEECSSS-SE-EEEETTSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHHHH
T ss_pred CCcHHHHHHHHHhhCC-ceEeCCEEEEEEEcCC-eE-EEEECCCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHHHh
Confidence 4445566666667778 9999999999987433 34 57888898899999999999 88887644321 11
Q ss_pred -cccCcEEEcCcccCCCCCeEEEeeecc
Q 011700 273 -LEKGGIKVTGRLQSSNSSVYAVGDVAA 299 (479)
Q Consensus 273 -~~~g~i~Vd~~l~t~~~~IyA~GD~~~ 299 (479)
.....++|+..++|+.++||+.||+..
T Consensus 280 ~~~~~~~kv~~~~~~~~~~i~~~~d~~~ 307 (431)
T 3k7m_X 280 GHGGQGLKILIHVRGAEAGIECVGDGIF 307 (431)
T ss_dssp CCCCCEEEEEEEEESCCTTEEEEBSSSS
T ss_pred CCCcceEEEEEEECCCCcCceEcCCCCE
Confidence 134559999999999999999999743
No 100
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=99.28 E-value=1.2e-11 Score=118.11 Aligned_cols=165 Identities=15% Similarity=0.096 Sum_probs=115.3
Q ss_pred CCEEEECCChHHHHHHHHHhhC-CCeEEEEeecCccccc-------------------------------------cCCH
Q 011700 163 GNAVVIGGGYIGMECAASLVIN-KINVTMVFPEAHCMAR-------------------------------------LFTP 204 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~~-------------------------------------~~~~ 204 (479)
.+|+|||+|++|+.+|..|++. |.+|+++++.+.+... ....
T Consensus 40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 119 (284)
T 1rp0_A 40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAA 119 (284)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHH
T ss_pred cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCHH
Confidence 4799999999999999999997 9999999988654210 0124
Q ss_pred HHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEEEEeC---------CC-----cEEeccEEEEecCCCCChhhhh-
Q 011700 205 KIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLR---------DG-----NRLPTDMVVVGIGIRPNTSLFE- 268 (479)
Q Consensus 205 ~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~v~~~---------~g-----~~i~~D~Vi~a~G~~p~~~l~~- 268 (479)
++...+.+.+.+ .||++++++++.++.. +++++..+.+. ++ .++++|.||+|+|..++.....
T Consensus 120 ~~~~~l~~~~~~~~gv~i~~~~~V~~i~~-~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~~ 198 (284)
T 1rp0_A 120 LFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGV 198 (284)
T ss_dssp HHHHHHHHHHHTSTTEEEEETEEEEEEEE-ETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHHH
T ss_pred HHHHHHHHHHHhcCCCEEEcCcEEEEEEe-cCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHHH
Confidence 455566666655 7999999999999987 35555555542 22 5799999999999887753111
Q ss_pred -----cc--ccc-ccCcEEEcC-------cccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCC
Q 011700 269 -----GQ--LTL-EKGGIKVTG-------RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP 331 (479)
Q Consensus 269 -----~~--~~~-~~g~i~Vd~-------~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~ 331 (479)
.+ +.. ...++.+|. +.+++.|++|++||++... +|.++..+.+..+..+|+.+|.++...
T Consensus 199 ~~~~~~g~~~~v~~~~g~~~~~~~~~~v~~~~~~~p~i~a~G~~~~~~---~g~~~~gp~~~~~~~sG~~~a~~i~~~ 273 (284)
T 1rp0_A 199 KRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEI---DGAPRMGPTFGAMMISGQKAGQLALKA 273 (284)
T ss_dssp HHHHHTTSSSCCCCCEEECHHHHHHHHHHHCEEEETTEEECTHHHHHH---HTCEECCSCCHHHHHHHHHHHHHHHHH
T ss_pred HHhhhccCCCCcCCcCCchhhhhhHHHhhccccccCCEEEEeeehhhh---cCCCCcChHHHHHHHhHHHHHHHHHHH
Confidence 11 111 123344442 3467789999999987532 233444456777889999999998754
No 101
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=99.20 E-value=4.2e-11 Score=106.11 Aligned_cols=114 Identities=19% Similarity=0.188 Sum_probs=77.7
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCccc-ccCCcccCCCHhHHHH
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT-CVGANEERLTPKWYNE 83 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 83 (479)
+|++|||||++|+.+|..|++.|.+ |+|+|+.+....... ....+|.+.. ..+......+.+.+++
T Consensus 2 ~~vvIIGgG~~Gl~~A~~l~~~g~~---v~lie~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~~~~ 68 (180)
T 2ywl_A 2 WDVIVVGGGPSGLSAALFLARAGLK---VLVLDGGRSKVKGVS----------RVPNYPGLLDEPSGEELLRRLEAHARR 68 (180)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCC---EEEEECSCCTTTTCS----------CCCCSTTCTTCCCHHHHHHHHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCCcccCch----------hhhccCCCcCCCCHHHHHHHHHHHHHH
Confidence 7999999999999999999999886 999999863211100 0111122100 0011122334556778
Q ss_pred cCcEEEeCceEEEEECCC--cEEEeCCCcEEEeceEEeecCCCcccccccCC
Q 011700 84 HGIELVLGTRVKSADVRR--KTLVTATGETISYKILIIATGARALKLEEFGL 133 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~--~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~ 133 (479)
.|++++.+ +|.+++.++ ..+.+.++ ++++|.||+|+|..|..+...++
T Consensus 69 ~gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~~~~~~g~ 118 (180)
T 2ywl_A 69 YGAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDPTLPSLLGL 118 (180)
T ss_dssp TTCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCCHHHHHHTC
T ss_pred cCCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCCCccccCCC
Confidence 89999999 898887643 35666677 89999999999999865444333
No 102
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=99.11 E-value=1.3e-09 Score=107.46 Aligned_cols=59 Identities=17% Similarity=0.250 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC--cEEeccEEEEecCCCC
Q 011700 203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRP 262 (479)
Q Consensus 203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~Vi~a~G~~p 262 (479)
+..+.+.+.+.+++.|++++++++|++++.++++.+ .+.+.+| .++.+|.||+|+|...
T Consensus 149 ~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~g~~~~~~a~~VV~A~G~~s 209 (369)
T 3dme_A 149 SHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGF-ELDFGGAEPMTLSCRVLINAAGLHA 209 (369)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSE-EEEECTTSCEEEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceE-EEEECCCceeEEEeCEEEECCCcch
Confidence 457788888899999999999999999998444433 4777887 4899999999999763
No 103
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=99.08 E-value=1.4e-10 Score=121.14 Aligned_cols=158 Identities=18% Similarity=0.169 Sum_probs=92.8
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc-ccccccCC----CCCCCCCC------------c
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA-LSKGYLLP----EAPARLPS------------F 65 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~-l~~~~~~~----~~~~~~~~------------~ 65 (479)
.++||||||||+||++||..|++.|.+ |+|||+++.......+ .+.+.... .....+.+ +
T Consensus 27 ~~yDVIVIGgG~AGl~AAlaLAr~G~k---VlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f 103 (651)
T 3ces_A 27 DPFDVIIIGGGHAGTEAAMAAARMGQQ---TLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQF 103 (651)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEE
T ss_pred CcCCEEEECChHHHHHHHHHHHhCCCC---EEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccch
Confidence 358999999999999999999999987 9999997421111111 11100000 00000000 0
Q ss_pred cc---ccCCc------------ccCCCHhHHHH-cCcEEEeCceEEEEECCCc---EEEeCCCcEEEeceEEeecCCCcc
Q 011700 66 HT---CVGAN------------EERLTPKWYNE-HGIELVLGTRVKSADVRRK---TLVTATGETISYKILIIATGARAL 126 (479)
Q Consensus 66 ~~---~~~~~------------~~~~~~~~~~~-~gv~~~~~~~v~~i~~~~~---~v~~~~g~~~~~d~lviAtG~~~~ 126 (479)
.. ..+.. ....+.+.+++ .|++++. ++|..+..++. .|.+.+|.++.+|.||+|||+.+.
T Consensus 104 ~~l~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~~-~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~ 182 (651)
T 3ces_A 104 RILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQ-QAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLD 182 (651)
T ss_dssp EEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEE-CCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTC
T ss_pred hhhhcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEEE-EEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCcc
Confidence 00 00000 00112233445 5899965 58998876544 356677888999999999999987
Q ss_pred cccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEe
Q 011700 127 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 192 (479)
Q Consensus 127 ~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~ 192 (479)
.+.. +|.+. + .+.+ +| +.++++++..|.++|.+|+.+.
T Consensus 183 ~~~i---~G~~~---~------------------~~gr---iG-g~~a~eLA~~L~~lG~~v~~~~ 220 (651)
T 3ces_A 183 GKIH---IGLDN---Y------------------SGGR---AG-DPPSIPLSRRLRELPLRVGRLK 220 (651)
T ss_dssp CEEE---CC--------------------------------------CCHHHHHHHTTTCCEEEEC
T ss_pred Cccc---cCccc---C------------------CCCC---cc-chhhhHHHHHHHhcCCeEEEec
Confidence 7665 44321 0 1233 56 7889999999999999999875
No 104
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Probab=99.03 E-value=2.8e-10 Score=119.83 Aligned_cols=35 Identities=26% Similarity=0.217 Sum_probs=31.8
Q ss_pred cCeEEEECCchHHHHHHHHHHHcC--CCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRG--VPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g--~~~~~V~lie~~~~ 41 (479)
++||||||||+||++||+.|++.| .+ |+|||+.+.
T Consensus 5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~---V~vlEk~~~ 41 (602)
T 1kf6_A 5 QADLAIVGAGGAGLRAAIAAAQANPNAK---IALISKVYP 41 (602)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCTTCC---EEEEESSCG
T ss_pred cCCEEEECCCHHHHHHHHHHHhcCCCCc---EEEEeCCCC
Confidence 589999999999999999999988 76 999999853
No 105
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=99.02 E-value=1e-10 Score=120.58 Aligned_cols=150 Identities=14% Similarity=0.127 Sum_probs=105.9
Q ss_pred EeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHH---------HHHHhcCCCCCEEEECCChHHHHHHHHHhh
Q 011700 113 SYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRL---------VNVMKSCSGGNAVVIGGGYIGMECAASLVI 183 (479)
Q Consensus 113 ~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l---------~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~ 183 (479)
.||++++++|++|+.+++ .+.+.++++......+..++ ..........+|+|||+|+.|+.+|..|++
T Consensus 37 ~~~~l~~~~g~~~~~~~i---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~aA~~La~ 113 (497)
T 2bry_A 37 SFQGLCRALGVESGGGLS---QYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVELAL 113 (497)
T ss_dssp HHHHHHHHHTCCTTCHHH---HHHHHHHTCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCcE---eehhhHHHHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECccHHHHHHHHHHHH
Confidence 578999999999887776 32223334444455554443 111111235789999999999999999999
Q ss_pred CCCeEEEEeecCccccc----cC----------------------------CHHHHHHHHHHHHhCCcEEEcCCceEEEE
Q 011700 184 NKINVTMVFPEAHCMAR----LF----------------------------TPKIASYYEEYYKSKGVKFVKGTVLSSFD 231 (479)
Q Consensus 184 ~g~~Vtlv~~~~~~l~~----~~----------------------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~ 231 (479)
.|.+|+++++.+.+... .. ..++.+.+.+.+++.||++++++++++++
T Consensus 114 ~G~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~ 193 (497)
T 2bry_A 114 LGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQ 193 (497)
T ss_dssp TTCEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEE
T ss_pred CCCeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEE
Confidence 99999999987653100 00 04666777888888999999999999998
Q ss_pred EcC-CCcEEEEEe--C-CC--cEEeccEEEEecCCCCChh
Q 011700 232 VDS-NGKVVAVNL--R-DG--NRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 232 ~~~-~g~v~~v~~--~-~g--~~i~~D~Vi~a~G~~p~~~ 265 (479)
.++ ++....+.+ . +| +++.+|.||+|+|..+...
T Consensus 194 ~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~r 233 (497)
T 2bry_A 194 PPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPE 233 (497)
T ss_dssp CCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCCT
T ss_pred EecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcccc
Confidence 631 232334555 4 56 5799999999999988664
No 106
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=98.95 E-value=1.1e-09 Score=101.34 Aligned_cols=116 Identities=16% Similarity=0.119 Sum_probs=71.7
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCccc----ccCC---cccC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT----CVGA---NEER 75 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~---~~~~ 75 (479)
+++||+|||||++|+++|..|+++|.+ |+|||+...... .++.. .... .....+.. ..+. ....
T Consensus 2 ~~~dVvVVGgG~aGl~aA~~la~~g~~---v~lie~~~~~~G-~~~~~--~~~~---~~~~~~~~~~~d~~g~~~~~~~~ 72 (232)
T 2cul_A 2 AAYQVLIVGAGFSGAETAFWLAQKGVR---VGLLTQSLDAVM-MPFLP--PKPP---FPPGSLLERAYDPKDERVWAFHA 72 (232)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESCGGGTT-CCSSC--CCSC---CCTTCHHHHHCCTTCCCHHHHHH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCC---EEEEecCCCcCC-cccCc--cccc---cchhhHHhhhccCCCCCHHHHHH
Confidence 359999999999999999999999887 999999732110 00000 0000 00000000 0000 0111
Q ss_pred CCHhHHHHc-CcEEEeCceEEEEECCCc---EEEeCCCcEEEeceEEeecCCCcccc
Q 011700 76 LTPKWYNEH-GIELVLGTRVKSADVRRK---TLVTATGETISYKILIIATGARALKL 128 (479)
Q Consensus 76 ~~~~~~~~~-gv~~~~~~~v~~i~~~~~---~v~~~~g~~~~~d~lviAtG~~~~~~ 128 (479)
.+.+.+++. +++++. ++|.++..++. .+.+.+|+++++|+||+|||......
T Consensus 73 ~l~~~~~~~~gv~i~~-~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~ 128 (232)
T 2cul_A 73 RAKYLLEGLRPLHLFQ-ATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGAR 128 (232)
T ss_dssp HHHHHHHTCTTEEEEE-CCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSCE
T ss_pred HHHHHHHcCCCcEEEE-eEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhc
Confidence 223445565 999985 58988876544 35567787899999999999875443
No 107
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=98.94 E-value=1.1e-09 Score=110.05 Aligned_cols=119 Identities=23% Similarity=0.327 Sum_probs=71.9
Q ss_pred CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-------CCCcccc------cccCCCCCCC-------
Q 011700 2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPY-------ERPALSK------GYLLPEAPAR------- 61 (479)
Q Consensus 2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~-------~~~~l~~------~~~~~~~~~~------- 61 (479)
++++||+|||||+||++||..|+++|.+ |+|+|+.+.... .++.+.. .+.. .....
T Consensus 25 ~~~~dViIIGgG~AGl~aA~~La~~G~~---V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~-~~~~~~~~~l~~ 100 (417)
T 3v76_A 25 AEKQDVVIIGAGAAGMMCAIEAGKRGRR---VLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLS-GNPHFCKSALAR 100 (417)
T ss_dssp ---CCEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEE-SSTTTTHHHHHH
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCc---EEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhh-cCHHHHHHHHHh
Confidence 4568999999999999999999999987 999999875210 0010000 0000 00000
Q ss_pred --------------CC------Cccccc--CCcccCCCHhHHHHcCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceE
Q 011700 62 --------------LP------SFHTCV--GANEERLTPKWYNEHGIELVLGTRVKSADVRRK--TLVTATGETISYKIL 117 (479)
Q Consensus 62 --------------~~------~~~~~~--~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~l 117 (479)
++ +..+.. .......+.+.+++.|++++.+++|.++..++. .|.+.++ ++.+|+|
T Consensus 101 ~~~~~~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~V 179 (417)
T 3v76_A 101 YRPQDFVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-TVDAASL 179 (417)
T ss_dssp SCHHHHHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-EEEESEE
T ss_pred cCHHHHHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-EEEeeEE
Confidence 00 000000 000011123345567999999999999876544 4555666 8999999
Q ss_pred EeecCCCc
Q 011700 118 IIATGARA 125 (479)
Q Consensus 118 viAtG~~~ 125 (479)
|+|||..+
T Consensus 180 IlAtG~~S 187 (417)
T 3v76_A 180 VVASGGKS 187 (417)
T ss_dssp EECCCCSS
T ss_pred EECCCCcc
Confidence 99999876
No 108
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=98.87 E-value=2.1e-09 Score=111.90 Aligned_cols=158 Identities=15% Similarity=0.113 Sum_probs=95.5
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc-ccccccC-----------CCC-------------
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA-LSKGYLL-----------PEA------------- 58 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~-l~~~~~~-----------~~~------------- 58 (479)
++||||||||+||++||..|++.|.+ |+|||+.+.......+ .+.+... ...
T Consensus 27 ~yDVIVIGgG~AGl~AAlalAr~G~k---VlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~ 103 (637)
T 2zxi_A 27 EFDVVVIGGGHAGIEAALAAARMGAK---TAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFK 103 (637)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEE
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCC---EEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhccccee
Confidence 58999999999999999999999987 9999997411111111 1100000 000
Q ss_pred ---CCCCCCccc---ccC-CcccCCCHhHHHH-cCcEEEeCceEEEEECCCcE---EEeCCCcEEEeceEEeecCCCccc
Q 011700 59 ---PARLPSFHT---CVG-ANEERLTPKWYNE-HGIELVLGTRVKSADVRRKT---LVTATGETISYKILIIATGARALK 127 (479)
Q Consensus 59 ---~~~~~~~~~---~~~-~~~~~~~~~~~~~-~gv~~~~~~~v~~i~~~~~~---v~~~~g~~~~~d~lviAtG~~~~~ 127 (479)
...-+.... ... ......+.+.+++ .|++++. ++|..+..++.. |.+.+|.++.+|.||+|||..+..
T Consensus 104 ~l~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~~-~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s~~ 182 (637)
T 2zxi_A 104 MLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQ-EEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNG 182 (637)
T ss_dssp EESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEE-SCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCBTC
T ss_pred ecccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEEE-eEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCccC
Confidence 000000000 000 0000112233445 5899965 589988765443 567788899999999999998876
Q ss_pred ccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEee
Q 011700 128 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFP 193 (479)
Q Consensus 128 ~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~ 193 (479)
+.. +|.. .+ .+.+ +| +..+++++..|.++|.+++.+..
T Consensus 183 ~~~---~G~~---~~------------------~~Gr---~G-~~~A~~la~~L~~lG~~v~~l~t 220 (637)
T 2zxi_A 183 VIY---IGDK---MI------------------PGGR---LG-EPRSEGLSDFYRRFDFPLIRFKT 220 (637)
T ss_dssp EEE---ETTE---EE------------------ECSB---TT-BCCBCTHHHHHHHTTCCCEEEEE
T ss_pred cee---ccce---ec------------------CCCC---CC-chhHHHHHHHHHhcCCceEEecC
Confidence 665 4432 11 1223 23 56789999999999988876643
No 109
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=98.86 E-value=3.9e-09 Score=104.96 Aligned_cols=123 Identities=16% Similarity=0.207 Sum_probs=77.1
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcc--cc---------cccC--CCCCCCCCCccccc
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPAL--SK---------GYLL--PEAPARLPSFHTCV 69 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l--~~---------~~~~--~~~~~~~~~~~~~~ 69 (479)
+++||+|||||++|+++|..|++.|.+ |+|+|+.+......... .. ++.. .........+....
T Consensus 10 ~~~dVvIVGaG~aGl~~A~~L~~~G~~---v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 86 (379)
T 3alj_A 10 KTRRAEVAGGGFAGLTAAIALKQNGWD---VRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWM 86 (379)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCC---EEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEe
Confidence 358999999999999999999999886 99999986532110000 00 0000 00000000000000
Q ss_pred -CC------------------cccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCccccc
Q 011700 70 -GA------------------NEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLE 129 (479)
Q Consensus 70 -~~------------------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~ 129 (479)
+. .....+.+.+.+.|++++.+++|++++.+. .+++.+|+++++|.||.|+|..+....
T Consensus 87 ~g~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~v~~~~g~~~~ad~vV~AdG~~s~vr~ 164 (379)
T 3alj_A 87 HNKSVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADPVG-RLTLQTGEVLEADLIVGADGVGSKVRD 164 (379)
T ss_dssp TTEEEEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEETTT-EEEETTSCEEECSEEEECCCTTCHHHH
T ss_pred CCceeeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEeCC-EEEECCCCEEEcCEEEECCCccHHHHH
Confidence 00 001112334456799999999999998755 888888889999999999998865443
No 110
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=98.85 E-value=2.7e-09 Score=111.54 Aligned_cols=159 Identities=19% Similarity=0.198 Sum_probs=94.1
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc-cccccc-----------CCCC------------
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA-LSKGYL-----------LPEA------------ 58 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~-l~~~~~-----------~~~~------------ 58 (479)
.++||+|||||+||++||..|+++|.+ |+|+|+.+.......+ .+.+.. ....
T Consensus 20 ~~yDVIVIGgG~AGl~AAlaLAr~G~k---VlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f 96 (641)
T 3cp8_A 20 HMYDVIVVGAGHAGCEAALAVARGGLH---CLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQF 96 (641)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEE
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCc---EEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCch
Confidence 358999999999999999999999987 9999997421111111 000000 0000
Q ss_pred ----CCCCCCccc---ccCC-cccCCCHhHHHH-cCcEEEeCceEEEEECCCcE---EEeCCCcEEEeceEEeecCCCcc
Q 011700 59 ----PARLPSFHT---CVGA-NEERLTPKWYNE-HGIELVLGTRVKSADVRRKT---LVTATGETISYKILIIATGARAL 126 (479)
Q Consensus 59 ----~~~~~~~~~---~~~~-~~~~~~~~~~~~-~gv~~~~~~~v~~i~~~~~~---v~~~~g~~~~~d~lviAtG~~~~ 126 (479)
...-|.... .... .....+.+.+++ .|++++.+ .|..+..++.. |.+.+|.++.+|.||+|||+.+.
T Consensus 97 ~~l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~-~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~ 175 (641)
T 3cp8_A 97 RMLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQD-TVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFLN 175 (641)
T ss_dssp EEECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEEC-CEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTCBT
T ss_pred hhcccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEee-EEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCCCC
Confidence 000000000 0000 000112233445 48999765 88887765544 55677889999999999999876
Q ss_pred cccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEe
Q 011700 127 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 192 (479)
Q Consensus 127 ~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~ 192 (479)
.+.. .|.. .+ ++.+++ | +.++++++..|.+.|.+|+.+.
T Consensus 176 ~~i~---~G~~---~~------------------~~g~~v--G-~~~a~~la~~L~~~G~kv~~l~ 214 (641)
T 3cp8_A 176 GLIH---IGMD---HF------------------PGGRST--A-EPPVEGLTESLASLGFSFGRLK 214 (641)
T ss_dssp CEEE---ETTE---EE------------------ECSSST--T-SCCBCSHHHHHHHTTCCEEEEE
T ss_pred ccce---eeee---ee------------------cccccc--C-CchhhhhHHHHHhCCceEEeec
Confidence 5543 2211 01 112221 3 5778899999999999987653
No 111
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=98.82 E-value=3.1e-09 Score=105.75 Aligned_cols=122 Identities=16% Similarity=0.165 Sum_probs=71.6
Q ss_pred CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc---ccccccC----CCCCC----CCCCccc--c
Q 011700 2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA---LSKGYLL----PEAPA----RLPSFHT--C 68 (479)
Q Consensus 2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~---l~~~~~~----~~~~~----~~~~~~~--~ 68 (479)
|++|||+||||||||+++|..|+++|++ |+|+|+.+.......+ ++...+. ..... .+..... .
T Consensus 2 Me~yDViIVGaGpaGl~~A~~La~~G~~---V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 78 (397)
T 3oz2_A 2 METYDVLVVGGGPGGSTAARYAAKYGLK---TLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGP 78 (397)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECT
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCc---EEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeC
Confidence 4569999999999999999999999998 9999997643221111 1110000 00000 0000000 0
Q ss_pred cC------------Cc---------ccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEe----CCC--cEEEeceEEeec
Q 011700 69 VG------------AN---------EERLTPKWYNEHGIELVLGTRVKSADVRRKTLVT----ATG--ETISYKILIIAT 121 (479)
Q Consensus 69 ~~------------~~---------~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~----~~g--~~~~~d~lviAt 121 (479)
.+ .. ....+.+...+.|++++.++++..+..++..+.. .++ .++++|.||.|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~a~~vIgAd 158 (397)
T 3oz2_A 79 SEKRPIILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAAD 158 (397)
T ss_dssp TCSSCEEEECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred CCceEeeccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeecccccceEEEEeEEEeCC
Confidence 00 00 0001122234679999999999887766554321 233 468999999999
Q ss_pred CCCcc
Q 011700 122 GARAL 126 (479)
Q Consensus 122 G~~~~ 126 (479)
|....
T Consensus 159 G~~S~ 163 (397)
T 3oz2_A 159 GFESE 163 (397)
T ss_dssp CTTCH
T ss_pred ccccH
Confidence 98754
No 112
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=98.82 E-value=8.9e-08 Score=96.96 Aligned_cols=59 Identities=20% Similarity=0.215 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCC---ceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700 203 TPKIASYYEEYYKSKGVKFVKGT---VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 262 (479)
Q Consensus 203 ~~~~~~~~~~~l~~~GV~i~~~~---~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p 262 (479)
+..+.+.+.+.+++.|+++++++ +|++++. +++.+..|.+.+|+++.+|.||+|+|...
T Consensus 160 ~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~-~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s 221 (438)
T 3dje_A 160 ARNALVAAAREAQRMGVKFVTGTPQGRVVTLIF-ENNDVKGAVTADGKIWRAERTFLCAGASA 221 (438)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEE-ETTEEEEEEETTTEEEECSEEEECCGGGG
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEe-cCCeEEEEEECCCCEEECCEEEECCCCCh
Confidence 45677888888999999999999 9999987 46677779999998999999999999643
No 113
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=98.80 E-value=2.5e-09 Score=110.36 Aligned_cols=59 Identities=22% Similarity=0.312 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700 203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 262 (479)
Q Consensus 203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p 262 (479)
...+.+.+.+.+++.|++|+++++|++|+. ++++++.|++.||+++.||.||++++...
T Consensus 220 ~~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~-~~~~~~gV~~~~g~~~~ad~VV~~a~~~~ 278 (501)
T 4dgk_A 220 TGALVQGMIKLFQDLGGEVVLNARVSHMET-TGNKIEAVHLEDGRRFLTQAVASNADVVH 278 (501)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTSCEEECSCEEECCC---
T ss_pred CcchHHHHHHHHHHhCCceeeecceeEEEe-eCCeEEEEEecCCcEEEcCEEEECCCHHH
Confidence 356788889999999999999999999998 57888899999999999999999877543
No 114
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=98.79 E-value=1e-08 Score=103.23 Aligned_cols=127 Identities=18% Similarity=0.192 Sum_probs=73.3
Q ss_pred CCC-cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC-Ccccccc---cC---------CCCC-------
Q 011700 1 MGR-AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYER-PALSKGY---LL---------PEAP------- 59 (479)
Q Consensus 1 M~~-~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~-~~l~~~~---~~---------~~~~------- 59 (479)
|+. ++||+|||||++|+++|..|+++|.+ |+|+|+.+...+.. ..+.... +. ....
T Consensus 1 M~~~~~dVvIIGgG~aGl~~A~~La~~G~~---V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 77 (421)
T 3nix_A 1 MQREKVDVLVIGAGPAGTVAASLVNKSGFK---VKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAK 77 (421)
T ss_dssp ---CEEEEEEECCSHHHHHHHHHHHTTTCC---EEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEE
T ss_pred CCCccCcEEEECCCHHHHHHHHHHHhCCCC---EEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcE
Confidence 543 48999999999999999999999987 99999986422111 0000000 00 0000
Q ss_pred -------C--CC-------CCcccccC-CcccCCCHhHHHHcCcEEEeCceEEEEECCCc----EEEeCCCc--EEEece
Q 011700 60 -------A--RL-------PSFHTCVG-ANEERLTPKWYNEHGIELVLGTRVKSADVRRK----TLVTATGE--TISYKI 116 (479)
Q Consensus 60 -------~--~~-------~~~~~~~~-~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~----~v~~~~g~--~~~~d~ 116 (479)
. .+ +....... ......+.+.+.+.|++++.+++|.+++.++. .+.+.+|+ ++++|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~ 157 (421)
T 3nix_A 78 FVRGKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARF 157 (421)
T ss_dssp EEETTEEEEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEE
T ss_pred EEeCCeeEEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCE
Confidence 0 00 00000000 00001122334456999999999999876533 23446776 699999
Q ss_pred EEeecCCCcccccc
Q 011700 117 LIIATGARALKLEE 130 (479)
Q Consensus 117 lviAtG~~~~~~~~ 130 (479)
||.|+|........
T Consensus 158 vV~A~G~~s~l~~~ 171 (421)
T 3nix_A 158 IIDASGYGRVIPRM 171 (421)
T ss_dssp EEECCGGGCHHHHH
T ss_pred EEECCCCchhhHHh
Confidence 99999987654433
No 115
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...
Probab=98.77 E-value=2e-11 Score=129.12 Aligned_cols=54 Identities=13% Similarity=0.257 Sum_probs=42.8
Q ss_pred HhCCcEEEcCCceEEEEEcCC-CcEEEEEeC---CCc--EEeccEEEEecCCCCChhhhh
Q 011700 215 KSKGVKFVKGTVLSSFDVDSN-GKVVAVNLR---DGN--RLPTDMVVVGIGIRPNTSLFE 268 (479)
Q Consensus 215 ~~~GV~i~~~~~v~~i~~~~~-g~v~~v~~~---~g~--~i~~D~Vi~a~G~~p~~~l~~ 268 (479)
++.||++++++.|++|..+++ +++..|++. +|+ ++.+|.||+|+|..|+..++.
T Consensus 271 ~~~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~ 330 (623)
T 3pl8_A 271 PEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLV 330 (623)
T ss_dssp EEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHH
T ss_pred cCCCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHH
Confidence 345899999999999987433 367777764 354 688999999999999998764
No 116
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=98.76 E-value=1.7e-08 Score=105.95 Aligned_cols=124 Identities=23% Similarity=0.276 Sum_probs=74.7
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-cccc---------c-----------------c
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERP-ALSK---------G-----------------Y 53 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~-~l~~---------~-----------------~ 53 (479)
||+++||||||||+||+++|..|+++|.+ |+|||+.+....... .+.. + +
T Consensus 20 ~M~~~DVvIVGgG~AGl~aA~~Lar~G~~---V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 96 (591)
T 3i3l_A 20 HMTRSKVAIIGGGPAGSVAGLTLHKLGHD---VTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATF 96 (591)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEE
T ss_pred cCCCCCEEEECcCHHHHHHHHHHHcCCCC---EEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEE
Confidence 56679999999999999999999999886 999999864322110 0000 0 0
Q ss_pred cCCCCCC----CC--CC-------cccccC-CcccCCCHhHHHHcCcEEEeCceEEEEECC-Cc--EEEeC-CC--cEEE
Q 011700 54 LLPEAPA----RL--PS-------FHTCVG-ANEERLTPKWYNEHGIELVLGTRVKSADVR-RK--TLVTA-TG--ETIS 113 (479)
Q Consensus 54 ~~~~~~~----~~--~~-------~~~~~~-~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~-~~--~v~~~-~g--~~~~ 113 (479)
....... .+ +. ...... ......+.+.+.+.|++++.+++|.++..+ +. .|.+. +| .++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~ 176 (591)
T 3i3l_A 97 LWGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVE 176 (591)
T ss_dssp ECSSSCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEE
T ss_pred EecCCCccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEE
Confidence 0000000 00 00 000000 000011223345689999999999999864 32 45555 56 5799
Q ss_pred eceEEeecCCCccc
Q 011700 114 YKILIIATGARALK 127 (479)
Q Consensus 114 ~d~lviAtG~~~~~ 127 (479)
+|.||.|+|.....
T Consensus 177 AdlVV~AdG~~S~l 190 (591)
T 3i3l_A 177 SDFVIDAGGSGGPI 190 (591)
T ss_dssp ESEEEECCGGGCHH
T ss_pred cCEEEECCCCcchh
Confidence 99999999987643
No 117
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=98.75 E-value=1.5e-08 Score=101.27 Aligned_cols=122 Identities=16% Similarity=0.230 Sum_probs=73.2
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc--ccc---------ccc-----CCCCCCC------
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA--LSK---------GYL-----LPEAPAR------ 61 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~--l~~---------~~~-----~~~~~~~------ 61 (479)
++||+|||||++|+++|..|+++|.+ |+|+|+.+........ +.. ++. .......
T Consensus 6 ~~dVvIVGaG~aGl~~A~~L~~~G~~---V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 82 (399)
T 2x3n_A 6 HIDVLINGCGIGGAMLAYLLGRQGHR---VVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYH 82 (399)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEE
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCc---EEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeC
Confidence 47999999999999999999999987 9999998643111000 000 000 0000000
Q ss_pred ----CCCccc----------ccCC-cccCCCHhHHHHc-CcEEEeCceEEEEECCCc----EEEeCCCcEEEeceEEeec
Q 011700 62 ----LPSFHT----------CVGA-NEERLTPKWYNEH-GIELVLGTRVKSADVRRK----TLVTATGETISYKILIIAT 121 (479)
Q Consensus 62 ----~~~~~~----------~~~~-~~~~~~~~~~~~~-gv~~~~~~~v~~i~~~~~----~v~~~~g~~~~~d~lviAt 121 (479)
...+.. .... .....+.+.+++. |++++.+++|++++.++. .+.+.+|+++++|.||.|+
T Consensus 83 ~g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~Ad 162 (399)
T 2x3n_A 83 DGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGAD 162 (399)
T ss_dssp TTEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECC
T ss_pred CCCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECC
Confidence 000000 0000 0000111223344 899999999999976543 6777788899999999999
Q ss_pred CCCcccc
Q 011700 122 GARALKL 128 (479)
Q Consensus 122 G~~~~~~ 128 (479)
|......
T Consensus 163 G~~s~vr 169 (399)
T 2x3n_A 163 GIASYVR 169 (399)
T ss_dssp CTTCHHH
T ss_pred CCChHHH
Confidence 9876543
No 118
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=98.74 E-value=1.3e-08 Score=105.36 Aligned_cols=120 Identities=19% Similarity=0.237 Sum_probs=74.2
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--------------CCC---Cccc-ccc-cCCCCC----C
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--------------YER---PALS-KGY-LLPEAP----A 60 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--------------~~~---~~l~-~~~-~~~~~~----~ 60 (479)
++||||||||++|++||..|++.|++ |+|+|+.+... +.. .... .+. .+.+.. .
T Consensus 107 ~~DVVIVGgGpaGL~aA~~La~~G~k---V~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i 183 (549)
T 3nlc_A 107 TERPIVIGFGPCGLFAGLVLAQMGFN---PIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQV 183 (549)
T ss_dssp CCCCEEECCSHHHHHHHHHHHHTTCC---CEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCe---EEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEe
Confidence 37999999999999999999999987 89999985310 000 0000 000 000000 0
Q ss_pred CCCCcc--------cccCC------------------cccCCCHhHHHHcCcEEEeCceEEEEECCCc---EEEeCCCcE
Q 011700 61 RLPSFH--------TCVGA------------------NEERLTPKWYNEHGIELVLGTRVKSADVRRK---TLVTATGET 111 (479)
Q Consensus 61 ~~~~~~--------~~~~~------------------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~---~v~~~~g~~ 111 (479)
..+.+. ...+. .....+.+.+++.|++++.+++|+++..++. .|.+.++++
T Consensus 184 ~~~~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~ 263 (549)
T 3nlc_A 184 KDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEE 263 (549)
T ss_dssp CCTTCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCE
T ss_pred ccccccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCE
Confidence 000000 00000 0001123344568999999999999986654 366788889
Q ss_pred EEeceEEeecCCCcc
Q 011700 112 ISYKILIIATGARAL 126 (479)
Q Consensus 112 ~~~d~lviAtG~~~~ 126 (479)
+.+|.||+|+|..+.
T Consensus 264 i~Ad~VVlA~G~~s~ 278 (549)
T 3nlc_A 264 IKSRHVVLAVGHSAR 278 (549)
T ss_dssp EECSCEEECCCTTCH
T ss_pred EECCEEEECCCCChh
Confidence 999999999998874
No 119
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=98.73 E-value=3.3e-08 Score=102.58 Aligned_cols=38 Identities=24% Similarity=0.383 Sum_probs=33.6
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
|++++||||||||+|||+||..|++.|++ |+|+|+++.
T Consensus 1 m~~~~~vvIIGaG~aGL~aA~~L~~~G~~---V~vlE~~~~ 38 (520)
T 1s3e_A 1 MSNKCDVVVVGGGISGMAAAKLLHDSGLN---VVVLEARDR 38 (520)
T ss_dssp --CBCSEEEECCBHHHHHHHHHHHHTTCC---EEEECSSSS
T ss_pred CCCCceEEEECCCHHHHHHHHHHHHCCCC---EEEEeCCCC
Confidence 77779999999999999999999999886 999999875
No 120
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=98.73 E-value=2.5e-08 Score=95.02 Aligned_cols=120 Identities=18% Similarity=0.137 Sum_probs=69.5
Q ss_pred cCeEEEECCchHHHHHHHHHHHc-CCCCCcEEEEcCCCCCCCCCCcccccccCC----CCC------CCCCC-----ccc
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKR-GVPPGELCIISEEPVAPYERPALSKGYLLP----EAP------ARLPS-----FHT 67 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~-g~~~~~V~lie~~~~~~~~~~~l~~~~~~~----~~~------~~~~~-----~~~ 67 (479)
++||+|||||++|+++|..|+++ |.+ |+|||+.+..... .....+.+.. ... ..++. +..
T Consensus 39 ~~dVvIIGgG~aGl~aA~~la~~~G~~---V~viEk~~~~gg~-~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~ 114 (284)
T 1rp0_A 39 ETDVVVVGAGSAGLSAAYEISKNPNVQ---VAIIEQSVSPGGG-AWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVV 114 (284)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTSC---EEEEESSSSCCTT-TTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEE
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCCe---EEEEECCCCCCCc-eecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEE
Confidence 47999999999999999999997 876 9999998643110 0000000000 000 00000 000
Q ss_pred c-cCCcccCCCHhHHHH-cCcEEEeCceEEEEECCCcEE---EeC---------CC-----cEEEeceEEeecCCCccc
Q 011700 68 C-VGANEERLTPKWYNE-HGIELVLGTRVKSADVRRKTL---VTA---------TG-----ETISYKILIIATGARALK 127 (479)
Q Consensus 68 ~-~~~~~~~~~~~~~~~-~gv~~~~~~~v~~i~~~~~~v---~~~---------~g-----~~~~~d~lviAtG~~~~~ 127 (479)
. ........+.+.+.+ .|++++.+++|.++..++..+ .+. ++ .++++|.||+|||..+..
T Consensus 115 ~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~ 193 (284)
T 1rp0_A 115 VKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPF 193 (284)
T ss_dssp ESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTT
T ss_pred ecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHH
Confidence 0 000000011222333 699999999999998655433 321 22 579999999999976543
No 121
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=98.73 E-value=7.8e-09 Score=103.11 Aligned_cols=123 Identities=15% Similarity=0.129 Sum_probs=73.4
Q ss_pred CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc---ccccc-----cCCC-CC--CCCCCccc--c
Q 011700 2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA---LSKGY-----LLPE-AP--ARLPSFHT--C 68 (479)
Q Consensus 2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~---l~~~~-----~~~~-~~--~~~~~~~~--~ 68 (479)
|+++||+|||||++|+++|..|+++|.+ |+|+|+.+.......+ ++..+ +... .. ..+..... .
T Consensus 2 m~~~dVvIvG~G~aGl~~A~~La~~G~~---V~l~E~~~~~g~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 78 (397)
T 3cgv_A 2 METYDVLVVGGGPGGSTAARYAAKYGLK---TLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGP 78 (397)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECT
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCCCC---EEEEeCCCCCCCCcccccccCHHHHHHcCCCCChHHhhhhcceEEEEcC
Confidence 4568999999999999999999999987 9999998743211110 00000 0000 00 00000000 0
Q ss_pred cCCc---------------------ccCCCHhHHHHcCcEEEeCceEEEEECCCcE---EEe---CCCcEEEeceEEeec
Q 011700 69 VGAN---------------------EERLTPKWYNEHGIELVLGTRVKSADVRRKT---LVT---ATGETISYKILIIAT 121 (479)
Q Consensus 69 ~~~~---------------------~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~---v~~---~~g~~~~~d~lviAt 121 (479)
.+.. ....+.+.+.+.|++++.+++|.++..++.. |.+ .++.++++|.||.|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~a~~vV~A~ 158 (397)
T 3cgv_A 79 SEKRPIILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAAD 158 (397)
T ss_dssp TCSSCEEEC-----CCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred CCCEEEEEeccccCCceeEEEeHHHHHHHHHHHHHhCCCEEEECCEEEEEEEeCCEEEEEEEEECCeEEEEEcCEEEECC
Confidence 0000 0001122334579999999999998766554 333 245689999999999
Q ss_pred CCCccc
Q 011700 122 GARALK 127 (479)
Q Consensus 122 G~~~~~ 127 (479)
|.....
T Consensus 159 G~~s~~ 164 (397)
T 3cgv_A 159 GFESEF 164 (397)
T ss_dssp CTTCHH
T ss_pred CcchHh
Confidence 987643
No 122
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=98.71 E-value=2.8e-07 Score=91.42 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700 203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 262 (479)
Q Consensus 203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p 262 (479)
+..+.+.+.+.+++.|++++.+++|++++. +++.+..|.+.+| ++.+|.||+|+|...
T Consensus 148 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~-~~~~v~gv~~~~g-~i~a~~VV~A~G~~s 205 (382)
T 1y56_B 148 PFEATTAFAVKAKEYGAKLLEYTEVKGFLI-ENNEIKGVKTNKG-IIKTGIVVNATNAWA 205 (382)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-SSSBEEEEEETTE-EEECSEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHCCCEEECCceEEEEEE-ECCEEEEEEECCc-EEECCEEEECcchhH
Confidence 456777788888999999999999999987 4556655777777 899999999999764
No 123
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=98.69 E-value=7.7e-08 Score=97.74 Aligned_cols=58 Identities=24% Similarity=0.438 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhCCcEEEcCCceEEEEEc--------------CCCcEEEEEeCCCcEE--eccEEEEecCCCC
Q 011700 204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVD--------------SNGKVVAVNLRDGNRL--PTDMVVVGIGIRP 262 (479)
Q Consensus 204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~--------------~~g~v~~v~~~~g~~i--~~D~Vi~a~G~~p 262 (479)
..+.+.+.+.+++.|++++.+++|++++.+ +++.+..+.+.+| ++ .+|.||+|+|...
T Consensus 181 ~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s 254 (448)
T 3axb_A 181 EKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWS 254 (448)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCH
Confidence 478888889999999999999999999862 2445556778777 68 9999999999753
No 124
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=98.68 E-value=2.1e-08 Score=103.28 Aligned_cols=119 Identities=16% Similarity=0.164 Sum_probs=73.4
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccc------cCCCC----CCCC--CCcccccCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGY------LLPEA----PARL--PSFHTCVGA 71 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~------~~~~~----~~~~--~~~~~~~~~ 71 (479)
.+||+|||||++|+++|..|++.|.+ |+|||+.+... +....... +.... ...+ ..+......
T Consensus 92 ~~dVvIVGgG~aGl~aA~~La~~G~~---V~liEk~~~~g--~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 166 (497)
T 2bry_A 92 NTKCLVVGAGPCGLRAAVELALLGAR---VVLVEKRIKFS--RHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIR 166 (497)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCSSCC--CCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHH
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCe---EEEEEeccccC--CCCcccCChhHHHHHHHcCCccccccccccccccCCHH
Confidence 58999999999999999999999886 99999986432 11100000 00000 0000 000000000
Q ss_pred cccCCCHhHHHHcCcEEEeCceEEEEECC-----CcEEEe--C-CC--cEEEeceEEeecCCCccc
Q 011700 72 NEERLTPKWYNEHGIELVLGTRVKSADVR-----RKTLVT--A-TG--ETISYKILIIATGARALK 127 (479)
Q Consensus 72 ~~~~~~~~~~~~~gv~~~~~~~v~~i~~~-----~~~v~~--~-~g--~~~~~d~lviAtG~~~~~ 127 (479)
.....+.+.+++.|++++.+++|.++..+ ...+.+ . +| .++.+|+||+|+|..+..
T Consensus 167 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~ 232 (497)
T 2bry_A 167 QLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVP 232 (497)
T ss_dssp HHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCC
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCccc
Confidence 11112334455679999999999999863 235655 3 55 478999999999988754
No 125
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=98.68 E-value=2.6e-07 Score=92.26 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700 204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 262 (479)
Q Consensus 204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p 262 (479)
..+.+.+.+.+++.|++++.+++|++++. +++.+..+.+.+| ++.+|.||+|+|...
T Consensus 174 ~~~~~~l~~~~~~~g~~i~~~~~v~~i~~-~~~~~~~v~~~~g-~~~a~~vV~a~G~~s 230 (405)
T 2gag_B 174 DHVAWAFARKANEMGVDIIQNCEVTGFIK-DGEKVTGVKTTRG-TIHAGKVALAGAGHS 230 (405)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEE-SSSBEEEEEETTC-CEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHCCCEEEcCCeEEEEEE-eCCEEEEEEeCCc-eEECCEEEECCchhH
Confidence 46778888889999999999999999987 4566667888877 799999999999764
No 126
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=98.67 E-value=4.2e-07 Score=97.44 Aligned_cols=58 Identities=9% Similarity=0.086 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCc-EEeccEEEEecCCCC
Q 011700 203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIGIRP 262 (479)
Q Consensus 203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~-~i~~D~Vi~a~G~~p 262 (479)
+..+.+.+.+.+++.|++++++++|++++.+++ .+ .|.+.+|+ ++.+|.||+|+|...
T Consensus 411 p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~-~v-~V~t~~G~~~i~Ad~VVlAtG~~s 469 (689)
T 3pvc_A 411 PSDLTHALMMLAQQNGMTCHYQHELQRLKRIDS-QW-QLTFGQSQAAKHHATVILATGHRL 469 (689)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCCEEEEEECSS-SE-EEEEC-CCCCEEESEEEECCGGGT
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCC-eE-EEEeCCCcEEEECCEEEECCCcch
Confidence 457788888888999999999999999998444 33 67888887 899999999999764
No 127
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=98.67 E-value=2.5e-08 Score=101.44 Aligned_cols=119 Identities=15% Similarity=0.267 Sum_probs=72.3
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-------CCCcccc-----ccc--CCCCCC---------
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPY-------ERPALSK-----GYL--LPEAPA--------- 60 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~-------~~~~l~~-----~~~--~~~~~~--------- 60 (479)
++||+|||||++|+++|..|+++|.+ |+|+|+.+...- .+..+.. .++ ......
T Consensus 26 ~~dVvIIGgG~aGl~aA~~la~~G~~---V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (447)
T 2i0z_A 26 HYDVIVIGGGPSGLMAAIGAAEEGAN---VLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIF 102 (447)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHS
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCC---EEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhc
Confidence 47999999999999999999999886 999999864210 0000000 000 000000
Q ss_pred ------------CCCCcccccC---------CcccCCCHhHHHHcCcEEEeCceEEEEECCCc---EEEeCCCcEEEece
Q 011700 61 ------------RLPSFHTCVG---------ANEERLTPKWYNEHGIELVLGTRVKSADVRRK---TLVTATGETISYKI 116 (479)
Q Consensus 61 ------------~~~~~~~~~~---------~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~---~v~~~~g~~~~~d~ 116 (479)
.++......+ ......+.+.+++.|++++.+++|.++..++. .|.+.+|+++.+|.
T Consensus 103 ~~~~~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~ 182 (447)
T 2i0z_A 103 NNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNH 182 (447)
T ss_dssp CHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSC
T ss_pred CHHHHHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCE
Confidence 0000000000 00001122334567999999999999875443 36667777799999
Q ss_pred EEeecCCCc
Q 011700 117 LIIATGARA 125 (479)
Q Consensus 117 lviAtG~~~ 125 (479)
||+|||..+
T Consensus 183 VVlAtGg~s 191 (447)
T 2i0z_A 183 VVIAVGGKS 191 (447)
T ss_dssp EEECCCCSS
T ss_pred EEECCCCCc
Confidence 999999876
No 128
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=98.67 E-value=9.2e-08 Score=99.02 Aligned_cols=102 Identities=17% Similarity=0.216 Sum_probs=84.4
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc----------------------------------------cc-
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM----------------------------------------AR- 200 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l----------------------------------------~~- 200 (479)
..+++|||+|+.|+.+|..|++.|.+|+++++.+.+. ..
T Consensus 107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~ 186 (549)
T 3nlc_A 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP 186 (549)
T ss_dssp CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEeccc
Confidence 4689999999999999999999999999999875320 00
Q ss_pred -c-------------C----------------CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEe
Q 011700 201 -L-------------F----------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLP 250 (479)
Q Consensus 201 -~-------------~----------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~ 250 (479)
. . .+.+.+.+.+.+++.|++++++++|++++. +++.+..|.+.+|+++.
T Consensus 187 ~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~-~~~~v~gV~l~~G~~i~ 265 (549)
T 3nlc_A 187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHM-EDGQITGVTLSNGEEIK 265 (549)
T ss_dssp TCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEE-SSSBEEEEEETTSCEEE
T ss_pred cccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEE-eCCEEEEEEECCCCEEE
Confidence 0 0 145666777888889999999999999987 56677789999999999
Q ss_pred ccEEEEecCCCCCh
Q 011700 251 TDMVVVGIGIRPNT 264 (479)
Q Consensus 251 ~D~Vi~a~G~~p~~ 264 (479)
+|.||+|+|..+..
T Consensus 266 Ad~VVlA~G~~s~~ 279 (549)
T 3nlc_A 266 SRHVVLAVGHSARD 279 (549)
T ss_dssp CSCEEECCCTTCHH
T ss_pred CCEEEECCCCChhh
Confidence 99999999998864
No 129
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=98.66 E-value=1.2e-07 Score=94.72 Aligned_cols=121 Identities=13% Similarity=0.102 Sum_probs=71.7
Q ss_pred CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccc-cCCCC---------C--------CCCC
Q 011700 2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGY-LLPEA---------P--------ARLP 63 (479)
Q Consensus 2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~-~~~~~---------~--------~~~~ 63 (479)
++++||+|||||++|+++|..|++.|.+ |+|+|+.+.... ++. ...+ +.+.. . ....
T Consensus 24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~-~~~-g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~ 98 (398)
T 2xdo_A 24 LSDKNVAIIGGGPVGLTMAKLLQQNGID---VSVYERDNDREA-RIF-GGTLDLHKGSGQEAMKKAGLLQTYYDLALPMG 98 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTCE---EEEEECSSSTTC-CCC-SCCEECCTTTHHHHHHHTTCHHHHHHHCBCCC
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCC---EEEEeCCCCccc-ccc-CCeeeeCCccHHHHHHhcChHHHHHHhhcccc
Confidence 4568999999999999999999999886 999999864321 100 0000 00000 0 0000
Q ss_pred -CcccccCC---------------cc--cCCCHhHHHH--cCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeec
Q 011700 64 -SFHTCVGA---------------NE--ERLTPKWYNE--HGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIAT 121 (479)
Q Consensus 64 -~~~~~~~~---------------~~--~~~~~~~~~~--~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAt 121 (479)
.+....+. .. ...+.+.+.+ .+++++.+++|++++.+.. ++++.+|+++++|.||.|+
T Consensus 99 ~~~~~~~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~Ad 178 (398)
T 2xdo_A 99 VNIADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILAN 178 (398)
T ss_dssp EEEECSSSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECS
T ss_pred eEEECCCCCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECC
Confidence 00000000 00 0011122222 1357888999999876543 5677788889999999999
Q ss_pred CCCccc
Q 011700 122 GARALK 127 (479)
Q Consensus 122 G~~~~~ 127 (479)
|.....
T Consensus 179 G~~S~v 184 (398)
T 2xdo_A 179 GGMSKV 184 (398)
T ss_dssp CTTCSC
T ss_pred CcchhH
Confidence 987543
No 130
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=98.65 E-value=3.7e-08 Score=103.05 Aligned_cols=121 Identities=21% Similarity=0.224 Sum_probs=71.9
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc--cc---------cccc---CCCCC---CC-CC--
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA--LS---------KGYL---LPEAP---AR-LP-- 63 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~--l~---------~~~~---~~~~~---~~-~~-- 63 (479)
++||+|||||++|+++|..|+++|++ |+|||+.+........ +. .++. ..... .. +.
T Consensus 49 ~~DVvIVGaG~aGL~~A~~La~~G~~---V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 125 (570)
T 3fmw_A 49 TTDVVVVGGGPVGLMLAGELRAGGVG---ALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGI 125 (570)
T ss_dssp --CEEEECCSHHHHHHHHHHHHTTCC---EEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTB
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCC---EEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCc
Confidence 47999999999999999999999987 9999998653211000 00 0000 00000 00 00
Q ss_pred ---Ccccc-c--CC---------cccCCCHhHHHHcCcEEEeCceEEEEECCCc--EEEe--CCC-cEEEeceEEeecCC
Q 011700 64 ---SFHTC-V--GA---------NEERLTPKWYNEHGIELVLGTRVKSADVRRK--TLVT--ATG-ETISYKILIIATGA 123 (479)
Q Consensus 64 ---~~~~~-~--~~---------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~--~v~~--~~g-~~~~~d~lviAtG~ 123 (479)
.+... . .. .....+.+.+++.|++++.+++|++++.+.. ++.+ .+| +++++|+||.|.|.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~ 205 (570)
T 3fmw_A 126 FTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGG 205 (570)
T ss_dssp CTTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCS
T ss_pred ccccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCC
Confidence 00000 0 00 0001122334456999999999999876654 4444 567 68999999999998
Q ss_pred Cccc
Q 011700 124 RALK 127 (479)
Q Consensus 124 ~~~~ 127 (479)
....
T Consensus 206 ~S~v 209 (570)
T 3fmw_A 206 RSTV 209 (570)
T ss_dssp SCHH
T ss_pred CchH
Confidence 7644
No 131
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=98.64 E-value=7e-07 Score=88.62 Aligned_cols=73 Identities=18% Similarity=0.366 Sum_probs=55.4
Q ss_pred CCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700 185 KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 263 (479)
Q Consensus 185 g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~ 263 (479)
+..+.++.+....+. +..+.+.+.+.+++.|++++.+++|++++.++++ + .+.+.++ ++.+|.||+|+|..++
T Consensus 134 ~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~-~-~v~~~~g-~~~a~~vV~A~G~~~~ 206 (389)
T 2gf3_A 134 ENYNAIFEPNSGVLF---SENCIRAYRELAEARGAKVLTHTRVEDFDISPDS-V-KIETANG-SYTADKLIVSMGAWNS 206 (389)
T ss_dssp TTEEEEEETTCEEEE---HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSC-E-EEEETTE-EEEEEEEEECCGGGHH
T ss_pred CCceEEEeCCCcEEe---HHHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCe-E-EEEeCCC-EEEeCEEEEecCccHH
Confidence 356677766655443 4677888888999999999999999999874333 3 4666665 7999999999997643
No 132
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=98.64 E-value=1.6e-07 Score=97.98 Aligned_cols=60 Identities=23% Similarity=0.389 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhC-CcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700 204 PKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 264 (479)
Q Consensus 204 ~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~ 264 (479)
..+.+.+.+.+++. ||+++.+ +|++++.++++.+..|.+.+|+++.+|.||.|+|..+..
T Consensus 194 ~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~~ 254 (550)
T 2e4g_A 194 HLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLL 254 (550)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCCC
T ss_pred HHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchhh
Confidence 45777888888888 9999999 999998755677778888999899999999999976644
No 133
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=98.64 E-value=6.9e-08 Score=99.94 Aligned_cols=123 Identities=15% Similarity=0.184 Sum_probs=73.0
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-cc-c---ccccC---------CCCCC-------CC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERP-AL-S---KGYLL---------PEAPA-------RL 62 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~-~l-~---~~~~~---------~~~~~-------~~ 62 (479)
++||+|||||++|+++|..|++.|++ |+|||+.+...+... .+ + ..++. ..... .+
T Consensus 7 ~~dVvIVGgG~aGl~aA~~La~~G~~---V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 83 (512)
T 3e1t_A 7 VFDLIVIGGGPGGSTLASFVAMRGHR---VLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRW 83 (512)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCC---EEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEEC
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCC---EEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEe
Confidence 48999999999999999999999987 999999874221110 00 0 00000 00000 00
Q ss_pred C----C--cccc---cCC----------cccCCCHhHHHHcCcEEEeCceEEEEECCCcE---EEe--CCC--cEEEece
Q 011700 63 P----S--FHTC---VGA----------NEERLTPKWYNEHGIELVLGTRVKSADVRRKT---LVT--ATG--ETISYKI 116 (479)
Q Consensus 63 ~----~--~~~~---~~~----------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~---v~~--~~g--~~~~~d~ 116 (479)
. . +... ... .....+.+.+.+.|++++.+++|.++..++.. +.+ .+| .++.+|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~ 163 (512)
T 3e1t_A 84 GKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARF 163 (512)
T ss_dssp SSCSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEE
T ss_pred cCCccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCE
Confidence 0 0 0000 000 00011223344679999999999999876553 333 456 3799999
Q ss_pred EEeecCCCccccc
Q 011700 117 LIIATGARALKLE 129 (479)
Q Consensus 117 lviAtG~~~~~~~ 129 (479)
||.|+|.......
T Consensus 164 VI~AdG~~S~vr~ 176 (512)
T 3e1t_A 164 IVDASGNRTRVSQ 176 (512)
T ss_dssp EEECCCTTCSSGG
T ss_pred EEECCCcchHHHH
Confidence 9999998765443
No 134
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=98.64 E-value=5e-08 Score=97.55 Aligned_cols=121 Identities=15% Similarity=0.087 Sum_probs=73.0
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-c--ccc---------cccCCCCCCCCCCccc--c
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERP-A--LSK---------GYLLPEAPARLPSFHT--C 68 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~-~--l~~---------~~~~~~~~~~~~~~~~--~ 68 (479)
.++||+|||||++|+++|..|++.|++ |+|+|+.+....... . +.. ++...........+.. .
T Consensus 4 ~~~~V~IVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 80 (397)
T 2vou_A 4 TTDRIAVVGGSISGLTAALMLRDAGVD---VDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDA 80 (397)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEET
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEec
Confidence 468999999999999999999999987 999999865211100 0 000 0000000000000000 0
Q ss_pred -cCCcc-----------cCCCHhHHHH--cCcEEEeCceEEEEECCC--cEEEeCCCcEEEeceEEeecCCCcc
Q 011700 69 -VGANE-----------ERLTPKWYNE--HGIELVLGTRVKSADVRR--KTLVTATGETISYKILIIATGARAL 126 (479)
Q Consensus 69 -~~~~~-----------~~~~~~~~~~--~gv~~~~~~~v~~i~~~~--~~v~~~~g~~~~~d~lviAtG~~~~ 126 (479)
.+... ...+.+.+.+ .+++++.+++|.+++.+. .++.+.+|+++.+|.||.|+|....
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 154 (397)
T 2vou_A 81 LTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASV 154 (397)
T ss_dssp TTCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred CCCCccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcchh
Confidence 00000 0011222322 389999999999997554 3566778889999999999998754
No 135
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=98.64 E-value=6.2e-08 Score=100.86 Aligned_cols=38 Identities=21% Similarity=0.435 Sum_probs=34.1
Q ss_pred CC-CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 1 MG-RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 1 M~-~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
|+ .++||+|||||++|+++|+.|+++|.+ |+|||+.+.
T Consensus 1 M~~~~~dVlIVGaG~aGl~~A~~La~~G~~---v~viEr~~~ 39 (535)
T 3ihg_A 1 MNDHEVDVLVVGAGLGGLSTAMFLARQGVR---VLVVERRPG 39 (535)
T ss_dssp CCCCSEEEEEECCSHHHHHHHHHHHTTTCC---EEEECSSSS
T ss_pred CCCccCcEEEECcCHHHHHHHHHHHHCCCC---EEEEeCCCC
Confidence 54 358999999999999999999999987 999999865
No 136
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=98.63 E-value=2.3e-07 Score=90.75 Aligned_cols=96 Identities=16% Similarity=0.215 Sum_probs=77.7
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc---------------------ccc-CC---------HHHHHHHH
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---------------------ARL-FT---------PKIASYYE 211 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l---------------------~~~-~~---------~~~~~~~~ 211 (479)
.+++|||+|+.|+.+|..|++.|.+|+++++.+.+. +.. .+ .++.+.+.
T Consensus 4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (357)
T 4a9w_A 4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLA 83 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHH
Confidence 469999999999999999999999999999886431 100 00 67888888
Q ss_pred HHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC
Q 011700 212 EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI 260 (479)
Q Consensus 212 ~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~ 260 (479)
+.+++.|++++.+++|++++.. ++....+.+.++ ++.+|.||+|+|.
T Consensus 84 ~~~~~~~~~~~~~~~v~~i~~~-~~~~~~v~~~~g-~~~~d~vV~AtG~ 130 (357)
T 4a9w_A 84 QYEQKYALPVLRPIRVQRVSHF-GERLRVVARDGR-QWLARAVISATGT 130 (357)
T ss_dssp HHHHHTTCCEECSCCEEEEEEE-TTEEEEEETTSC-EEEEEEEEECCCS
T ss_pred HHHHHcCCEEEcCCEEEEEEEC-CCcEEEEEeCCC-EEEeCEEEECCCC
Confidence 8899999999999999999873 333322777777 8999999999995
No 137
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=98.62 E-value=1.3e-08 Score=103.75 Aligned_cols=125 Identities=22% Similarity=0.310 Sum_probs=73.4
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-CCCc---ccccccC----CCCC-C----CC-------
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPY-ERPA---LSKGYLL----PEAP-A----RL------- 62 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~-~~~~---l~~~~~~----~~~~-~----~~------- 62 (479)
.++||+|||||+||+++|..|++.|++ |+|+|+.+.... ...+ +....+. .... . ..
T Consensus 5 ~~~dVvIVGaG~aGl~aA~~La~~G~~---V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 81 (453)
T 3atr_A 5 LKYDVLIIGGGFAGSSAAYQLSRRGLK---ILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYS 81 (453)
T ss_dssp EECSEEEECCSHHHHHHHHHHSSSSCC---EEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEEC
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCC---EEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEEC
Confidence 368999999999999999999999987 999999864211 1100 0000000 0000 0 00
Q ss_pred CC----cccc-cCC-----cccCCCHhHHHHcCcEEEeCceEEEEECCCcE---EEeC---CCc--EEEeceEEeecCCC
Q 011700 63 PS----FHTC-VGA-----NEERLTPKWYNEHGIELVLGTRVKSADVRRKT---LVTA---TGE--TISYKILIIATGAR 124 (479)
Q Consensus 63 ~~----~~~~-~~~-----~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~---v~~~---~g~--~~~~d~lviAtG~~ 124 (479)
+. +... .+. .....+.+.+.+.|++++.+++|++++.++.. |.+. +|+ ++++|.||.|+|..
T Consensus 82 ~~~~~~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~ 161 (453)
T 3atr_A 82 PDMQTVWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYS 161 (453)
T ss_dssp TTSSCEEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGG
T ss_pred CCCceEEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCc
Confidence 00 0000 000 00011122334579999999999998766554 3343 565 79999999999987
Q ss_pred cccccc
Q 011700 125 ALKLEE 130 (479)
Q Consensus 125 ~~~~~~ 130 (479)
......
T Consensus 162 s~vr~~ 167 (453)
T 3atr_A 162 RSFRSK 167 (453)
T ss_dssp CTTGGG
T ss_pred hhhHHh
Confidence 654433
No 138
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=98.61 E-value=9.6e-08 Score=102.26 Aligned_cols=45 Identities=11% Similarity=0.276 Sum_probs=36.0
Q ss_pred HHHcCcEEEeCceEEEEECCCcE--EEeCCCcEEEeceEEeecCCCc
Q 011700 81 YNEHGIELVLGTRVKSADVRRKT--LVTATGETISYKILIIATGARA 125 (479)
Q Consensus 81 ~~~~gv~~~~~~~v~~i~~~~~~--v~~~~g~~~~~d~lviAtG~~~ 125 (479)
+++.|++++.+++|.++..++.. |.+.+|.++.+|.||+|||...
T Consensus 427 a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~s 473 (676)
T 3ps9_A 427 AQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQI 473 (676)
T ss_dssp HHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGGG
T ss_pred HHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcch
Confidence 44679999999999999765543 4555777899999999999764
No 139
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=98.61 E-value=7.6e-08 Score=95.44 Aligned_cols=35 Identities=17% Similarity=0.361 Sum_probs=32.2
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
++||+|||||++|+++|++|+++|.+ |+|||+...
T Consensus 17 ~~dvvIIGgG~~Gl~~A~~La~~G~~---V~llE~~~~ 51 (382)
T 1ryi_A 17 HYEAVVIGGGIIGSAIAYYLAKENKN---TALFESGTM 51 (382)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSST
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCc---EEEEeCCCC
Confidence 58999999999999999999999987 999999854
No 140
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=98.59 E-value=1e-07 Score=96.00 Aligned_cols=61 Identities=16% Similarity=0.286 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhh
Q 011700 203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF 267 (479)
Q Consensus 203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~ 267 (479)
...+.+.+.+.+++.|++++++++|++|+. +++++ | ..+|+++.+|.||+++|......++
T Consensus 188 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~-~~~~v--V-~~~g~~~~ad~Vv~a~~~~~~~~ll 248 (421)
T 3nrn_A 188 CKAVIDELERIIMENKGKILTRKEVVEINI-EEKKV--Y-TRDNEEYSFDVAISNVGVRETVKLI 248 (421)
T ss_dssp HHHHHHHHHHHHHTTTCEEESSCCEEEEET-TTTEE--E-ETTCCEEECSEEEECSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCeEEEEEE-ECCEE--E-EeCCcEEEeCEEEECCCHHHHHHhc
Confidence 467888899999999999999999999986 44554 4 5678899999999999976544444
No 141
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=98.58 E-value=1.7e-07 Score=91.20 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=31.8
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
+||+|||||++|+++|..|++.|.+ |+|+|+.+.
T Consensus 3 ~dV~IIGaG~~Gl~~A~~L~~~G~~---V~vlE~~~~ 36 (336)
T 1yvv_A 3 VPIAIIGTGIAGLSAAQALTAAGHQ---VHLFDKSRG 36 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSS
T ss_pred ceEEEECCcHHHHHHHHHHHHCCCc---EEEEECCCC
Confidence 7999999999999999999999987 999999864
No 142
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=98.57 E-value=1.2e-07 Score=99.42 Aligned_cols=35 Identities=37% Similarity=0.483 Sum_probs=32.6
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
++||||||||+||++||+.|+++|.+ |+|+|+.+.
T Consensus 126 ~~DVvVVGaG~aGl~aA~~la~~G~~---V~vlEk~~~ 160 (571)
T 1y0p_A 126 TVDVVVVGSGGAGFSAAISATDSGAK---VILIEKEPV 160 (571)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCC
Confidence 58999999999999999999999987 999999875
No 143
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Probab=98.56 E-value=1.2e-07 Score=97.77 Aligned_cols=123 Identities=18% Similarity=0.171 Sum_probs=73.2
Q ss_pred CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc--cc---------ccccCCC-CCCCCCC-----
Q 011700 2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA--LS---------KGYLLPE-APARLPS----- 64 (479)
Q Consensus 2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~--l~---------~~~~~~~-~~~~~~~----- 64 (479)
.+++||+||||||+|+++|..|+++|.+ |+|||+.+........ +. -++...- .....+.
T Consensus 9 ~~~~dVlIVGaGpaGl~~A~~La~~G~~---v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 85 (500)
T 2qa1_A 9 RSDAAVIVVGAGPAGMMLAGELRLAGVE---VVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGG 85 (500)
T ss_dssp CSBCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETT
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHCCCC---EEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccc
Confidence 4568999999999999999999999987 9999998653211000 00 0000000 0000000
Q ss_pred --cccc-cCC-----------cccCCCHhHHHHcCcEEEeCceEEEEECCCcE--EEeCCCc---EEEeceEEeecCCCc
Q 011700 65 --FHTC-VGA-----------NEERLTPKWYNEHGIELVLGTRVKSADVRRKT--LVTATGE---TISYKILIIATGARA 125 (479)
Q Consensus 65 --~~~~-~~~-----------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~--v~~~~g~---~~~~d~lviAtG~~~ 125 (479)
+... ... .....+.+.+.+.|++++.+++|++++.+... +.+.++. ++++|+||.|.|...
T Consensus 86 ~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S 165 (500)
T 2qa1_A 86 LPIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRS 165 (500)
T ss_dssp EEEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTTC
T ss_pred eecccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcch
Confidence 0000 000 00011223345679999999999998765543 4444543 799999999999875
Q ss_pred cc
Q 011700 126 LK 127 (479)
Q Consensus 126 ~~ 127 (479)
..
T Consensus 166 ~V 167 (500)
T 2qa1_A 166 SV 167 (500)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 144
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=98.55 E-value=1.2e-07 Score=92.59 Aligned_cols=116 Identities=16% Similarity=0.269 Sum_probs=68.3
Q ss_pred CeEEEECCchHHHHHHHHHHH---cCCCCCcEEEEcCCCCCCCC----CC------ccc--ccccC--C-----------
Q 011700 5 FVYVIVGGGVAAGYAALEFTK---RGVPPGELCIISEEPVAPYE----RP------ALS--KGYLL--P----------- 56 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~---~g~~~~~V~lie~~~~~~~~----~~------~l~--~~~~~--~----------- 56 (479)
+||+|||||++|+++|..|++ .|++ |+|+|+++..... +. ... ..++. +
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~---V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~ 78 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGPLY---LAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYD 78 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CCEE---EEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHH
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCCce---EEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHH
Confidence 699999999999999999999 7776 9999998642110 00 000 00000 0
Q ss_pred -----CCCCCCCCcc----------cccCCc-ccCCCHhHHHHcCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEE
Q 011700 57 -----EAPARLPSFH----------TCVGAN-EERLTPKWYNEHGIELVLGTRVKSADVRRK--TLVTATGETISYKILI 118 (479)
Q Consensus 57 -----~~~~~~~~~~----------~~~~~~-~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lv 118 (479)
.....++... ...... .......+.+..+++++.+++|.+++.++. +|.+.+|+++.+|+||
T Consensus 79 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV 158 (342)
T 3qj4_A 79 ELLAYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIV 158 (342)
T ss_dssp HHHHTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEE
T ss_pred HHHhCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEE
Confidence 0000000000 000000 001112233345899999999999986543 5666778778999999
Q ss_pred eecCC
Q 011700 119 IATGA 123 (479)
Q Consensus 119 iAtG~ 123 (479)
+|+..
T Consensus 159 ~A~p~ 163 (342)
T 3qj4_A 159 LTMPV 163 (342)
T ss_dssp ECSCH
T ss_pred ECCCH
Confidence 99974
No 145
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=98.54 E-value=1.1e-07 Score=99.63 Aligned_cols=35 Identities=26% Similarity=0.409 Sum_probs=32.5
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
++||||||||++|++||+.|+++|.+ |+|||+.+.
T Consensus 121 ~~DVvVVG~G~aGl~aA~~la~~G~~---V~vlEk~~~ 155 (566)
T 1qo8_A 121 TTQVLVVGAGSAGFNASLAAKKAGAN---VILVDKAPF 155 (566)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHTCC---EEEECSSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCC
Confidence 57999999999999999999999987 999999874
No 146
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=98.52 E-value=2.9e-07 Score=89.16 Aligned_cols=100 Identities=15% Similarity=0.208 Sum_probs=80.7
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc---------------ccc---CCHHHHHHHHHHHHhCCcEEEcC
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---------------ARL---FTPKIASYYEEYYKSKGVKFVKG 224 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l---------------~~~---~~~~~~~~~~~~l~~~GV~i~~~ 224 (479)
.+++|||+|+.|+.+|..|++.|.+|+++++.+.+- +.. ...++.+.+.+.+++.|++++++
T Consensus 8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (332)
T 3lzw_A 8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICLE 87 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEECS
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEcc
Confidence 579999999999999999999999999999976421 100 13677788888888899999999
Q ss_pred CceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC---CCCh
Q 011700 225 TVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI---RPNT 264 (479)
Q Consensus 225 ~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~---~p~~ 264 (479)
++|.+++..+++ ...+.+.+++ +.+|.|++|+|. .|..
T Consensus 88 ~~v~~i~~~~~~-~~~v~~~~g~-~~~d~vVlAtG~~~~~p~~ 128 (332)
T 3lzw_A 88 QAVESVEKQADG-VFKLVTNEET-HYSKTVIITAGNGAFKPRK 128 (332)
T ss_dssp CCEEEEEECTTS-CEEEEESSEE-EEEEEEEECCTTSCCEECC
T ss_pred CEEEEEEECCCC-cEEEEECCCE-EEeCEEEECCCCCcCCCCC
Confidence 999999874332 3457777775 999999999999 6654
No 147
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=98.50 E-value=4e-07 Score=93.74 Aligned_cols=121 Identities=18% Similarity=0.283 Sum_probs=72.6
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc--cc---------cccc---CCCCCCC---CCC--
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA--LS---------KGYL---LPEAPAR---LPS-- 64 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~--l~---------~~~~---~~~~~~~---~~~-- 64 (479)
++||+||||||+|+++|..|+++|.+ |+|||+.+........ +. -++. ....... +..
T Consensus 12 ~~dVlIVGaGpaGl~~A~~La~~G~~---v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 88 (499)
T 2qa2_A 12 DASVIVVGAGPAGLMLAGELRLGGVD---VMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRP 88 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCC---EEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceeccee
Confidence 58999999999999999999999987 9999998653211000 00 0000 0000000 000
Q ss_pred cccc-cC--C---------cccCCCHhHHHHcCcEEEeCceEEEEECCCc--EEEeCCCc---EEEeceEEeecCCCccc
Q 011700 65 FHTC-VG--A---------NEERLTPKWYNEHGIELVLGTRVKSADVRRK--TLVTATGE---TISYKILIIATGARALK 127 (479)
Q Consensus 65 ~~~~-~~--~---------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~---~~~~d~lviAtG~~~~~ 127 (479)
+... .. . .....+.+.+.+.|++++.+++|++++.+.. ++.+.++. ++++|+||.|.|.....
T Consensus 89 ~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~V 168 (499)
T 2qa2_A 89 VDFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRSTV 168 (499)
T ss_dssp EEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTCHH
T ss_pred cccccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCcccHH
Confidence 0000 00 0 0001122334567999999999999976544 45555553 79999999999987543
No 148
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=98.50 E-value=2.2e-07 Score=92.76 Aligned_cols=38 Identities=24% Similarity=0.434 Sum_probs=33.4
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
|.+++||+|||||++|+++|++|+++|.+ |+|+|+.+.
T Consensus 1 M~~~~DVvIIGaG~~Gl~~A~~La~~G~~---V~vlE~~~~ 38 (397)
T 2oln_A 1 MTESYDVVVVGGGPVGLATAWQVAERGHR---VLVLERHTF 38 (397)
T ss_dssp --CEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCT
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCCC
Confidence 66678999999999999999999999987 999999864
No 149
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=98.49 E-value=1.7e-07 Score=93.91 Aligned_cols=122 Identities=16% Similarity=0.131 Sum_probs=70.5
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcc--c---------ccccCC--CCCCCCCCcccc-
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPAL--S---------KGYLLP--EAPARLPSFHTC- 68 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l--~---------~~~~~~--~~~~~~~~~~~~- 68 (479)
+++||+|||||++|+++|..|+++|++ |+|+|+.+......... . -++... ........+...
T Consensus 22 ~~~dV~IVGaG~aGl~~A~~La~~G~~---V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~ 98 (407)
T 3rp8_A 22 GHMKAIVIGAGIGGLSAAVALKQSGID---CDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRD 98 (407)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCC---EEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEE
Confidence 468999999999999999999999987 99999986421100000 0 000000 000000000000
Q ss_pred -c-CC----------------cc----cCCCHhHHHH--cCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecC
Q 011700 69 -V-GA----------------NE----ERLTPKWYNE--HGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATG 122 (479)
Q Consensus 69 -~-~~----------------~~----~~~~~~~~~~--~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG 122 (479)
. +. .. ...+...+.+ ..++++.+++|++++.++. ++.+.+|+++.+|.||.|+|
T Consensus 99 ~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG 178 (407)
T 3rp8_A 99 FRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADG 178 (407)
T ss_dssp TTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCGGGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred CCCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCcCEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECCC
Confidence 0 00 00 0011122221 1278889999999876654 45667888999999999999
Q ss_pred CCccc
Q 011700 123 ARALK 127 (479)
Q Consensus 123 ~~~~~ 127 (479)
.....
T Consensus 179 ~~S~v 183 (407)
T 3rp8_A 179 SHSAL 183 (407)
T ss_dssp TTCSS
T ss_pred cChHH
Confidence 87543
No 150
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=98.49 E-value=3.4e-07 Score=90.51 Aligned_cols=57 Identities=12% Similarity=0.057 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700 203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 262 (479)
Q Consensus 203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p 262 (479)
+..+.+.+.+.+++.|++++.+++|++++.+ ++. ..|.+.+| ++.+|.||+|+|...
T Consensus 153 ~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~-~~~-~~V~t~~g-~i~a~~VV~A~G~~s 209 (381)
T 3nyc_A 153 TDALHQGYLRGIRRNQGQVLCNHEALEIRRV-DGA-WEVRCDAG-SYRAAVLVNAAGAWC 209 (381)
T ss_dssp HHHHHHHHHHHHHHTTCEEESSCCCCEEEEE-TTE-EEEECSSE-EEEESEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEEe-CCe-EEEEeCCC-EEEcCEEEECCChhH
Confidence 4567788888889999999999999999874 333 46777777 899999999999653
No 151
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=98.48 E-value=3.7e-07 Score=90.05 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=31.8
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
+||+|||||++|+++|++|+++|.+ |+|||+.+.
T Consensus 3 ~dvvIIG~Gi~Gl~~A~~La~~G~~---V~vle~~~~ 36 (372)
T 2uzz_A 3 YDLIIIGSGSVGAAAGYYATRAGLN---VLMTDAHMP 36 (372)
T ss_dssp EEEEESCTTHHHHHHHHHHHHTTCC---EEEECSSCS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCC
Confidence 8999999999999999999999987 999999864
No 152
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=98.48 E-value=8.3e-07 Score=86.20 Aligned_cols=97 Identities=12% Similarity=0.258 Sum_probs=78.5
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc-------c-----------ccCCHHHHHHHHHHHHhCCcEEEcC
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------A-----------RLFTPKIASYYEEYYKSKGVKFVKG 224 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------~-----------~~~~~~~~~~~~~~l~~~GV~i~~~ 224 (479)
.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. + .....++.+.+.+.+++.+++++.+
T Consensus 6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 85 (335)
T 2zbw_A 6 TDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVYSLG 85 (335)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEEEES
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEEEeC
Confidence 579999999999999999999999999999875431 0 0012567777888888889999999
Q ss_pred CceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCC
Q 011700 225 TVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR 261 (479)
Q Consensus 225 ~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~ 261 (479)
++|.+++..++ ...+.+.+++++.+|.|++|+|..
T Consensus 86 ~~v~~i~~~~~--~~~v~~~~g~~~~~~~lv~AtG~~ 120 (335)
T 2zbw_A 86 ERAETLEREGD--LFKVTTSQGNAYTAKAVIIAAGVG 120 (335)
T ss_dssp CCEEEEEEETT--EEEEEETTSCEEEEEEEEECCTTS
T ss_pred CEEEEEEECCC--EEEEEECCCCEEEeCEEEECCCCC
Confidence 99999987433 345777888899999999999984
No 153
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=98.47 E-value=3.9e-07 Score=88.43 Aligned_cols=101 Identities=16% Similarity=0.210 Sum_probs=79.2
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecC----cc------------ccc----cCCHHHHHHHHHHHHhCCcEE
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEA----HC------------MAR----LFTPKIASYYEEYYKSKGVKF 221 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~----~~------------l~~----~~~~~~~~~~~~~l~~~GV~i 221 (479)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+ .+ ++. ...+++.+.+.+.+++.|+++
T Consensus 22 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i 101 (338)
T 3itj_A 22 HNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTEI 101 (338)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcCCEE
Confidence 4789999999999999999999999999999843 11 111 013577888889999999999
Q ss_pred EcCCceEEEEEcCCCcEEEEEe---CCCcEEeccEEEEecCCCCChh
Q 011700 222 VKGTVLSSFDVDSNGKVVAVNL---RDGNRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 222 ~~~~~v~~i~~~~~g~v~~v~~---~~g~~i~~D~Vi~a~G~~p~~~ 265 (479)
+.++ +.+++.. ++.+ .+.+ .++.++.+|.+++|+|.+|...
T Consensus 102 ~~~~-v~~i~~~-~~~~-~v~~~~~~~~~~~~~d~vvlAtG~~~~~~ 145 (338)
T 3itj_A 102 ITET-VSKVDLS-SKPF-KLWTEFNEDAEPVTTDAIILATGASAKRM 145 (338)
T ss_dssp ECSC-EEEEECS-SSSE-EEEETTCSSSCCEEEEEEEECCCEEECCC
T ss_pred EEeE-EEEEEEc-CCEE-EEEEEecCCCcEEEeCEEEECcCCCcCCC
Confidence 9998 8999863 3333 4555 3667899999999999877653
No 154
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=98.46 E-value=1.1e-06 Score=86.33 Aligned_cols=100 Identities=14% Similarity=0.182 Sum_probs=80.5
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc-------c--------c---cCCHHHHHHHHHHHHhCCcEEEc
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------A--------R---LFTPKIASYYEEYYKSKGVKFVK 223 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------~--------~---~~~~~~~~~~~~~l~~~GV~i~~ 223 (479)
..+++|||+|+.|+.+|..|++.|.+|+++++.+.+- + . ....++.+.+.+.+++.+++++.
T Consensus 14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 93 (360)
T 3ab1_A 14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVVL 93 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEEEC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEEEc
Confidence 3579999999999999999999999999999875431 1 0 01256777888888889999999
Q ss_pred CCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700 224 GTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 262 (479)
Q Consensus 224 ~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p 262 (479)
+++|.+++..+++. ..+.+.+|+++.+|.|++|+|..+
T Consensus 94 ~~~v~~i~~~~~~~-~~v~~~~g~~~~~~~li~AtG~~~ 131 (360)
T 3ab1_A 94 NETVTKYTKLDDGT-FETRTNTGNVYRSRAVLIAAGLGA 131 (360)
T ss_dssp SCCEEEEEECTTSC-EEEEETTSCEEEEEEEEECCTTCS
T ss_pred CCEEEEEEECCCce-EEEEECCCcEEEeeEEEEccCCCc
Confidence 99999998743333 357788888999999999999843
No 155
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=98.46 E-value=2.4e-07 Score=94.28 Aligned_cols=99 Identities=18% Similarity=0.318 Sum_probs=74.9
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... |.+. ......+.+.+++
T Consensus 167 ~~~vvIiGgG~~g~e~A~~l~~~g~~---V~lv~~~~~~l-------------------~~~~----~~~~~~l~~~l~~ 220 (455)
T 2yqu_A 167 PKRLIVVGGGVIGLELGVVWHRLGAE---VIVLEYMDRIL-------------------PTMD----LEVSRAAERVFKK 220 (455)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSC-------------------TTSC----HHHHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCE---EEEEecCCccc-------------------cccC----HHHHHHHHHHHHH
Confidence 36899999999999999999998876 99999885310 0000 0111234566778
Q ss_pred cCcEEEeCceEEEEECCCcE--EEeCCCcEEEeceEEeecCCCcccc
Q 011700 84 HGIELVLGTRVKSADVRRKT--LVTATGETISYKILIIATGARALKL 128 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~--v~~~~g~~~~~d~lviAtG~~~~~~ 128 (479)
.|++++.+++|.+++.+++. +.+.+++++.+|.||+|+|.+|..+
T Consensus 221 ~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~~ 267 (455)
T 2yqu_A 221 QGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYTE 267 (455)
T ss_dssp HTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCT
T ss_pred CCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCCC
Confidence 89999999999999876543 4455788899999999999988753
No 156
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=98.45 E-value=7.4e-07 Score=85.80 Aligned_cols=100 Identities=10% Similarity=0.192 Sum_probs=79.3
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeec--Cccc--------cc---cCCHHHHHHHHHHHHhCCcEEEcCCceEE
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPE--AHCM--------AR---LFTPKIASYYEEYYKSKGVKFVKGTVLSS 229 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~--~~~l--------~~---~~~~~~~~~~~~~l~~~GV~i~~~~~v~~ 229 (479)
.+++|||+|+.|+.+|..|++.|.+|+++++. ..+. +. ....++.+.+.+.+++.|++++. .++.+
T Consensus 16 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~ 94 (323)
T 3f8d_A 16 FDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLL-DIVEK 94 (323)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEE-SCEEE
T ss_pred cCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEE-EEEEE
Confidence 47999999999999999999999999999985 1111 11 11257778888888999999999 88999
Q ss_pred EEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700 230 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 230 i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~ 265 (479)
++.+ ++. ..+.+.+++++.+|.+++|+|..|...
T Consensus 95 i~~~-~~~-~~v~~~~g~~~~~d~lvlAtG~~~~~~ 128 (323)
T 3f8d_A 95 IENR-GDE-FVVKTKRKGEFKADSVILGIGVKRRKL 128 (323)
T ss_dssp EEEC---C-EEEEESSSCEEEEEEEEECCCCEECCC
T ss_pred EEec-CCE-EEEEECCCCEEEcCEEEECcCCCCccC
Confidence 9873 332 357788888999999999999887654
No 157
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=98.45 E-value=2.6e-07 Score=92.04 Aligned_cols=121 Identities=14% Similarity=0.110 Sum_probs=72.1
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC---CCCCCc-cccc---ccCCCC--------CCCCCCccc-
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA---PYERPA-LSKG---YLLPEA--------PARLPSFHT- 67 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~---~~~~~~-l~~~---~~~~~~--------~~~~~~~~~- 67 (479)
++||+|||||++|+++|..|++.|.+ |+|+|+.+.. .-.+.. +... .+..-. ......+..
T Consensus 2 ~~dV~IvGaG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~ 78 (394)
T 1k0i_A 2 KTQVAIIGAGPSGLLLGQLLHKAGID---NVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIA 78 (394)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHTCC---EEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEE
T ss_pred CccEEEECCCHHHHHHHHHHHHCCCC---EEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEE
Confidence 38999999999999999999999987 9999998631 000000 0000 000000 000000000
Q ss_pred ------------cc-CC--------cccCCCHhHHHHcCcEEEeCceEEEEECCC---cEEEe-CCCc--EEEeceEEee
Q 011700 68 ------------CV-GA--------NEERLTPKWYNEHGIELVLGTRVKSADVRR---KTLVT-ATGE--TISYKILIIA 120 (479)
Q Consensus 68 ------------~~-~~--------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~---~~v~~-~~g~--~~~~d~lviA 120 (479)
.. +. .....+.+.+.+.|++++.+++|+++..+. ..+.+ .+|+ ++++|.||.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~A 158 (394)
T 1k0i_A 79 FAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGC 158 (394)
T ss_dssp ETTEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEEC
T ss_pred ECCceEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEEC
Confidence 00 00 000112223345699999999999997642 45666 6776 7999999999
Q ss_pred cCCCccc
Q 011700 121 TGARALK 127 (479)
Q Consensus 121 tG~~~~~ 127 (479)
+|.....
T Consensus 159 dG~~S~v 165 (394)
T 1k0i_A 159 DGFHGIS 165 (394)
T ss_dssp CCTTCST
T ss_pred CCCCcHH
Confidence 9987544
No 158
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=98.45 E-value=1.9e-07 Score=93.77 Aligned_cols=39 Identities=18% Similarity=0.370 Sum_probs=32.4
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
||+++||+|||||++|+++|..|++.|.++ |+|+|+.+.
T Consensus 1 M~~~~dVvIVGaG~aGl~~A~~L~~~G~~~--v~v~E~~~~ 39 (410)
T 3c96_A 1 MSEPIDILIAGAGIGGLSCALALHQAGIGK--VTLLESSSE 39 (410)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHTTCSE--EEEEESSSS
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCCe--EEEEECCCC
Confidence 788899999999999999999999988652 899999864
No 159
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=98.45 E-value=8.1e-07 Score=89.17 Aligned_cols=99 Identities=19% Similarity=0.214 Sum_probs=78.8
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc---------------------------c-------------
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR---------------------------L------------- 201 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~---------------------------~------------- 201 (479)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+... .
T Consensus 27 ~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 106 (417)
T 3v76_A 27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQDF 106 (417)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHHHH
Confidence 458999999999999999999999999999987642100 0
Q ss_pred -----------------------CCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEec
Q 011700 202 -----------------------FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI 258 (479)
Q Consensus 202 -----------------------~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~ 258 (479)
...++.+.+.+.+++.|++++++++|++++.++ +. ..|.+.+| ++.+|.||+|+
T Consensus 107 ~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~-~~-~~V~~~~g-~i~ad~VIlAt 183 (417)
T 3v76_A 107 VALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTA-SG-FRVTTSAG-TVDAASLVVAS 183 (417)
T ss_dssp HHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEET-TE-EEEEETTE-EEEESEEEECC
T ss_pred HHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeC-CE-EEEEECCc-EEEeeEEEECC
Confidence 012566677788888999999999999998743 33 45777777 89999999999
Q ss_pred CCCCC
Q 011700 259 GIRPN 263 (479)
Q Consensus 259 G~~p~ 263 (479)
|..+.
T Consensus 184 G~~S~ 188 (417)
T 3v76_A 184 GGKSI 188 (417)
T ss_dssp CCSSC
T ss_pred CCccC
Confidence 98874
No 160
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=98.45 E-value=2.5e-07 Score=93.65 Aligned_cols=99 Identities=21% Similarity=0.301 Sum_probs=77.5
Q ss_pred CCEEEECCChHHHHHHHHHhh---CCCeEEEEeecCcccccc----------CCHHHHHHHHHHHHhCCcEEEcCCceEE
Q 011700 163 GNAVVIGGGYIGMECAASLVI---NKINVTMVFPEAHCMARL----------FTPKIASYYEEYYKSKGVKFVKGTVLSS 229 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~---~g~~Vtlv~~~~~~l~~~----------~~~~~~~~~~~~l~~~GV~i~~~~~v~~ 229 (479)
++++|||+|+.|+.+|..|++ .+.+|+++++.+.+.... ...++...+.+.+++.||+++. .++++
T Consensus 5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~ 83 (437)
T 3sx6_A 5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIA-QSAEQ 83 (437)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEEC-SCEEE
T ss_pred CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEE-eEEEE
Confidence 689999999999999999999 799999999987642110 1123333456778889999985 57899
Q ss_pred EEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhh
Q 011700 230 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL 266 (479)
Q Consensus 230 i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l 266 (479)
++.+ +. .+.+.+++++.+|.+++|+|.+|+...
T Consensus 84 id~~-~~---~V~~~~g~~i~~d~lviAtG~~~~~~~ 116 (437)
T 3sx6_A 84 IDAE-AQ---NITLADGNTVHYDYLMIATGPKLAFEN 116 (437)
T ss_dssp EETT-TT---EEEETTSCEEECSEEEECCCCEECGGG
T ss_pred EEcC-CC---EEEECCCCEEECCEEEECCCCCcCccc
Confidence 9762 22 477888989999999999999988653
No 161
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=98.44 E-value=7.7e-07 Score=88.46 Aligned_cols=100 Identities=19% Similarity=0.337 Sum_probs=77.1
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc-c-cCCH---------HHHHHHHHHHHhCCcEEEcCCceEEE
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-R-LFTP---------KIASYYEEYYKSKGVKFVKGTVLSSF 230 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~-~~~~---------~~~~~~~~~l~~~GV~i~~~~~v~~i 230 (479)
..+|+|||+|+.|+.+|..|...+.+|+++++++.+.- + .++. ++.....+.+++.||+++++++++++
T Consensus 9 ~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~i 88 (385)
T 3klj_A 9 STKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATSI 88 (385)
T ss_dssp BCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEEE
T ss_pred CCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEEE
Confidence 46899999999999999999888999999998875311 1 0111 11122356677899999999999999
Q ss_pred EEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700 231 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 231 ~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~ 265 (479)
+.+ +. .+.+.+|+++.+|.+++|||.+|...
T Consensus 89 d~~-~~---~v~~~~g~~~~yd~lvlAtG~~p~~p 119 (385)
T 3klj_A 89 DPN-NK---LVTLKSGEKIKYEKLIIASGSIANKI 119 (385)
T ss_dssp ETT-TT---EEEETTSCEEECSEEEECCCEEECCC
T ss_pred ECC-CC---EEEECCCCEEECCEEEEecCCCcCCC
Confidence 862 32 47788999999999999999887654
No 162
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=98.44 E-value=1.7e-07 Score=94.36 Aligned_cols=63 Identities=21% Similarity=0.268 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhh
Q 011700 203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF 267 (479)
Q Consensus 203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~ 267 (479)
...+.+.+.+.++++|++++++++|++|+. +++++..|.+. |+++.+|.||+++|......++
T Consensus 195 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~-~~~~~~gv~~~-g~~~~ad~VV~a~~~~~~~~ll 257 (425)
T 3ka7_A 195 CKGIIDALETVISANGGKIHTGQEVSKILI-ENGKAAGIIAD-DRIHDADLVISNLGHAATAVLC 257 (425)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEET-TEEEECSEEEECSCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCEEEECCceeEEEE-ECCEEEEEEEC-CEEEECCEEEECCCHHHHHHhc
Confidence 366888889999999999999999999987 45666667664 7789999999999876554444
No 163
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=98.43 E-value=1.2e-06 Score=90.95 Aligned_cols=102 Identities=23% Similarity=0.234 Sum_probs=81.9
Q ss_pred CCEEEECCChHHHHHHHHHh-hCCCeEEEEeecCccc--------cc------------cC----------------CHH
Q 011700 163 GNAVVIGGGYIGMECAASLV-INKINVTMVFPEAHCM--------AR------------LF----------------TPK 205 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~-~~g~~Vtlv~~~~~~l--------~~------------~~----------------~~~ 205 (479)
.+|+|||+|+.|+.+|..|+ +.|.+|+++++.+.+. +. .+ .++
T Consensus 9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~e 88 (540)
T 3gwf_A 9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPE 88 (540)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHHH
Confidence 47999999999999999999 8999999999865321 00 01 246
Q ss_pred HHHHHHHHHHhCCc--EEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC--CCCh
Q 011700 206 IASYYEEYYKSKGV--KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI--RPNT 264 (479)
Q Consensus 206 ~~~~~~~~l~~~GV--~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~--~p~~ 264 (479)
+.+.+.+..++.|+ +++++++|++++.++++....|.+.+|+++.+|.||+|+|. +|..
T Consensus 89 i~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~ 151 (540)
T 3gwf_A 89 ILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINF 151 (540)
T ss_dssp HHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCC
T ss_pred HHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCC
Confidence 77778888888898 89999999999875554556788899999999999999994 5544
No 164
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=98.43 E-value=9.9e-07 Score=91.80 Aligned_cols=102 Identities=22% Similarity=0.286 Sum_probs=82.3
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc--------c------------cC----------------CHHH
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA--------R------------LF----------------TPKI 206 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--------~------------~~----------------~~~~ 206 (479)
.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . .+ .+++
T Consensus 22 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~ei 101 (549)
T 4ap3_A 22 YDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPEI 101 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHHH
T ss_pred CCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHHH
Confidence 5799999999999999999999999999998653210 0 01 2467
Q ss_pred HHHHHHHHHhCCc--EEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecC--CCCCh
Q 011700 207 ASYYEEYYKSKGV--KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG--IRPNT 264 (479)
Q Consensus 207 ~~~~~~~l~~~GV--~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G--~~p~~ 264 (479)
.+.+.+.+++.|+ +++++++|++++.+++.....|.+.+|+++.+|.||+|+| .+|..
T Consensus 102 ~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~ 163 (549)
T 4ap3_A 102 LAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANT 163 (549)
T ss_dssp HHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCC
T ss_pred HHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCC
Confidence 7788888888888 8999999999987555555678889999999999999999 45544
No 165
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=98.42 E-value=1e-06 Score=84.60 Aligned_cols=101 Identities=14% Similarity=0.180 Sum_probs=78.7
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeecC--ccc---------c--ccCCHHHHHHHHHHHHhCCcEEEcCCceEEE
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEA--HCM---------A--RLFTPKIASYYEEYYKSKGVKFVKGTVLSSF 230 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~--~~l---------~--~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i 230 (479)
+++|||+|+.|+.+|..|++.|.+|+++++.. .+. . ....+++.+.+.+.+++.|++++.++++..+
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i 82 (310)
T 1fl2_A 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL 82 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCEEEEE
Confidence 58999999999999999999999999997531 111 0 0012567788888888999999999999999
Q ss_pred EEcCC-CcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700 231 DVDSN-GKVVAVNLRDGNRLPTDMVVVGIGIRPNT 264 (479)
Q Consensus 231 ~~~~~-g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~ 264 (479)
+.+.+ +....+.+.+|+++.+|.+++|+|.+|..
T Consensus 83 ~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~ 117 (310)
T 1fl2_A 83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKWRN 117 (310)
T ss_dssp ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred EecccCCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence 75322 22346778888899999999999987754
No 166
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=98.42 E-value=4.7e-07 Score=95.07 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=32.1
Q ss_pred cCeEEEECCchHHHHHHHHHHHc------CCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKR------GVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~------g~~~~~V~lie~~~~ 41 (479)
++||||||||+||+++|..|+++ |.+ |+|||+.+.
T Consensus 35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~---V~vlEk~~~ 75 (584)
T 2gmh_A 35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLR---VCLVEKAAH 75 (584)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCC---EEEECSSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHhcccccCCCCc---EEEEeCCCC
Confidence 48999999999999999999998 887 999999864
No 167
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=98.41 E-value=1.5e-06 Score=86.17 Aligned_cols=99 Identities=22% Similarity=0.270 Sum_probs=80.7
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc-----------------------------------------
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------------- 200 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------- 200 (479)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~ 90 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKS 90 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCce
Confidence 468999999999999999999999999999987543210
Q ss_pred --cCC-----------HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700 201 --LFT-----------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 201 --~~~-----------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~ 265 (479)
.++ .++.+.+.+.+++.|++++.++++++++. ++ .+.+.+|+++.+|.||.|+|..+...
T Consensus 91 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~---~v~~~~g~~~~ad~vV~AdG~~s~vr 163 (379)
T 3alj_A 91 VSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP--VG---RLTLQTGEVLEADLIVGADGVGSKVR 163 (379)
T ss_dssp EEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET--TT---EEEETTSCEEECSEEEECCCTTCHHH
T ss_pred eeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe--CC---EEEECCCCEEEcCEEEECCCccHHHH
Confidence 000 45567777888889999999999999975 44 57788898999999999999987653
No 168
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=98.40 E-value=1.6e-06 Score=82.44 Aligned_cols=100 Identities=16% Similarity=0.264 Sum_probs=77.4
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc---------ccc---cCCHHHHHHHHHHHHhC-CcEEEcCCceEE
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC---------MAR---LFTPKIASYYEEYYKSK-GVKFVKGTVLSS 229 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~---------l~~---~~~~~~~~~~~~~l~~~-GV~i~~~~~v~~ 229 (479)
.+++|||+|+.|+.+|..|++.|.+|+++++.+.. ++. ....++.+.+.+.+++. +++++.+ ++++
T Consensus 3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~ 81 (297)
T 3fbs_A 3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEG-RVTD 81 (297)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEES-CEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEe-EEEE
Confidence 46999999999999999999999999999975321 111 11246777778888776 7888765 7899
Q ss_pred EEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700 230 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 230 i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~ 265 (479)
++.++++ ..+.+.+++++.+|.|++|+|.+|...
T Consensus 82 i~~~~~~--~~v~~~~g~~~~~d~vviAtG~~~~~~ 115 (297)
T 3fbs_A 82 AKGSFGE--FIVEIDGGRRETAGRLILAMGVTDELP 115 (297)
T ss_dssp EEEETTE--EEEEETTSCEEEEEEEEECCCCEEECC
T ss_pred EEEcCCe--EEEEECCCCEEEcCEEEECCCCCCCCC
Confidence 9874322 467888998999999999999987543
No 169
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=98.39 E-value=3.1e-07 Score=95.58 Aligned_cols=38 Identities=26% Similarity=0.312 Sum_probs=33.1
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHH---cCCCCCcEEEEcCCCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTK---RGVPPGELCIISEEPV 41 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~---~g~~~~~V~lie~~~~ 41 (479)
|++.+||||||||++|+++|..|++ .|.+ |+|||+.+.
T Consensus 2 ~~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~---V~liE~~~~ 42 (538)
T 2aqj_A 2 NKPIKNIVIVGGGTAGWMAASYLVRALQQQAN---ITLIESAAI 42 (538)
T ss_dssp CCBCCEEEEECCSHHHHHHHHHHHHHCCSSCE---EEEEECSSS
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhhcCCCCE---EEEECCCCC
Confidence 1456899999999999999999999 8876 999999754
No 170
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=98.38 E-value=2.4e-07 Score=86.44 Aligned_cols=36 Identities=25% Similarity=0.306 Sum_probs=32.8
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
|+ +||+|||||||||+||..|+++|++ |+|+|+.+.
T Consensus 1 Mt--~dV~IIGaGpaGL~aA~~La~~G~~---V~v~Ek~~~ 36 (336)
T 3kkj_A 1 MT--VPIAIIGTGIAGLSAAQALTAAGHQ---VHLFDKSRG 36 (336)
T ss_dssp -C--CCEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSS
T ss_pred CC--CCEEEECcCHHHHHHHHHHHHCCCC---EEEEECCCC
Confidence 65 8999999999999999999999998 999999864
No 171
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=98.38 E-value=1.8e-06 Score=82.91 Aligned_cols=99 Identities=15% Similarity=0.256 Sum_probs=77.2
Q ss_pred CEEEECCChHHHHHHHHHhhCCC-eEEEEeecCc---c--------ccc---cC-CHHHHHHHHHHHHhCCcEEEcCCce
Q 011700 164 NAVVIGGGYIGMECAASLVINKI-NVTMVFPEAH---C--------MAR---LF-TPKIASYYEEYYKSKGVKFVKGTVL 227 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~---~--------l~~---~~-~~~~~~~~~~~l~~~GV~i~~~~~v 227 (479)
+++|||+|+.|+.+|..|++.|. +|+++++... + .+. .. .+++.+.+.+.+++.|++++. .++
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v 81 (311)
T 2q0l_A 3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEM-TAV 81 (311)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEEC-SCE
T ss_pred eEEEECccHHHHHHHHHHHHCCCCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEE-EEE
Confidence 58999999999999999999999 9999998521 0 111 11 256777888888889999998 688
Q ss_pred EEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700 228 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 228 ~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~ 265 (479)
.+++.+ ++. ..+.+.+++++.+|.|++|+|..|...
T Consensus 82 ~~i~~~-~~~-~~v~~~~g~~~~~~~vv~AtG~~~~~~ 117 (311)
T 2q0l_A 82 QRVSKK-DSH-FVILAEDGKTFEAKSVIIATGGSPKRT 117 (311)
T ss_dssp EEEEEE-TTE-EEEEETTSCEEEEEEEEECCCEEECCC
T ss_pred EEEEEc-CCE-EEEEEcCCCEEECCEEEECCCCCCCCC
Confidence 998863 332 346678888999999999999876543
No 172
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=98.37 E-value=1.2e-06 Score=91.14 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=31.5
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
++||||||||+||++||++|++ |.+ |+|+|+.+.
T Consensus 8 ~~DVvVVG~G~AGl~aAl~la~-G~~---V~vlEk~~~ 41 (540)
T 1chu_A 8 SCDVLIIGSGAAGLSLALRLAD-QHQ---VIVLSKGPV 41 (540)
T ss_dssp ECSEEEECCSHHHHHHHHHHTT-TSC---EEEECSSCT
T ss_pred CCCEEEECccHHHHHHHHHHhc-CCc---EEEEECCCC
Confidence 5899999999999999999999 887 999999864
No 173
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=98.37 E-value=4.9e-07 Score=91.31 Aligned_cols=96 Identities=21% Similarity=0.291 Sum_probs=71.9
Q ss_pred CCEEEECCChHHHHHHHHHhhCC--CeEEEEeecCccccccCCHH----------HHHHHHHHHHhCCcEEEcCCceEEE
Q 011700 163 GNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCMARLFTPK----------IASYYEEYYKSKGVKFVKGTVLSSF 230 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l~~~~~~~----------~~~~~~~~l~~~GV~i~~~~~v~~i 230 (479)
|+|+|||+|+.|+.+|..|++++ .+||++++++.+.-...-+. +...+.+.+++.||+++.+ ++++|
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~-~v~~I 81 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINE-KAESI 81 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECS-CEEEE
T ss_pred CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEe-EEEEE
Confidence 68999999999999999999865 78999999876432111111 1112234567789999877 58999
Q ss_pred EEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700 231 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 263 (479)
Q Consensus 231 ~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~ 263 (479)
+. +.+ .|.+.+|+++++|.+++|+|.++.
T Consensus 82 d~--~~~--~V~~~~g~~i~YD~LViAtG~~~~ 110 (430)
T 3hyw_A 82 DP--DAN--TVTTQSGKKIEYDYLVIATGPKLV 110 (430)
T ss_dssp ET--TTT--EEEETTCCEEECSEEEECCCCEEE
T ss_pred EC--CCC--EEEECCCCEEECCEEEEeCCCCcc
Confidence 86 232 477899999999999999998753
No 174
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=98.37 E-value=1.6e-06 Score=89.64 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=33.0
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
.++||||||+|+||++||++|+++|.+ |+|||+.+.
T Consensus 40 ~~~DVvVVGaG~AGl~AA~~aa~~G~~---V~vlEk~~~ 75 (510)
T 4at0_A 40 YEADVVVAGYGIAGVAASIEAARAGAD---VLVLERTSG 75 (510)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSS
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCC
Confidence 358999999999999999999999987 999999875
No 175
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=98.36 E-value=2.7e-06 Score=86.37 Aligned_cols=100 Identities=26% Similarity=0.350 Sum_probs=80.4
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc-------------------c-----------------------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------------------R----------------------- 200 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------~----------------------- 200 (479)
..|+|||+|..|+.+|..|++.|.+|+++++.+.+.. .
T Consensus 27 ~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (447)
T 2i0z_A 27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNED 106 (447)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHH
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCHHH
Confidence 5799999999999999999999999999998653210 0
Q ss_pred -------------------cC-----CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEE
Q 011700 201 -------------------LF-----TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV 256 (479)
Q Consensus 201 -------------------~~-----~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~ 256 (479)
.+ ...+.+.+.+.+++.||+++++++|+++.. +++.+..|.+.+|+++.+|.||+
T Consensus 107 ~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~-~~~~v~~V~~~~G~~i~Ad~VVl 185 (447)
T 2i0z_A 107 IITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEY-ENGQTKAVILQTGEVLETNHVVI 185 (447)
T ss_dssp HHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTCCEEECSCEEE
T ss_pred HHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEe-cCCcEEEEEECCCCEEECCEEEE
Confidence 00 134455667777889999999999999986 45666778888888899999999
Q ss_pred ecCCCCC
Q 011700 257 GIGIRPN 263 (479)
Q Consensus 257 a~G~~p~ 263 (479)
|+|..+.
T Consensus 186 AtGg~s~ 192 (447)
T 2i0z_A 186 AVGGKSV 192 (447)
T ss_dssp CCCCSSS
T ss_pred CCCCCcC
Confidence 9998773
No 176
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=98.36 E-value=2.4e-06 Score=87.15 Aligned_cols=103 Identities=16% Similarity=0.227 Sum_probs=77.3
Q ss_pred CCEEEECCChHHHHHHHHHhh---CCCe---EEEEeecCcccc-------------------------------------
Q 011700 163 GNAVVIGGGYIGMECAASLVI---NKIN---VTMVFPEAHCMA------------------------------------- 199 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~---~g~~---Vtlv~~~~~~l~------------------------------------- 199 (479)
++|+|||+|+.|+.+|..|.+ .|.+ |+++++.+.+..
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~ 82 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA 82 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence 579999999999999999999 9999 999998754210
Q ss_pred c------------cC--CHHHHHHHHHHHHhCCcE--EEcCCceEEEEEcCCCcEEEEEeCC---C--cEEeccEEEEec
Q 011700 200 R------------LF--TPKIASYYEEYYKSKGVK--FVKGTVLSSFDVDSNGKVVAVNLRD---G--NRLPTDMVVVGI 258 (479)
Q Consensus 200 ~------------~~--~~~~~~~~~~~l~~~GV~--i~~~~~v~~i~~~~~g~v~~v~~~~---g--~~i~~D~Vi~a~ 258 (479)
. .+ ..++.+.+.+.+++.|++ ++++++|.+++..+++....|.+.+ | .++.+|.||+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt 162 (464)
T 2xve_A 83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT 162 (464)
T ss_dssp TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence 0 00 145666777778888998 8999999999874432223455543 4 578999999999
Q ss_pred C--CCCChh
Q 011700 259 G--IRPNTS 265 (479)
Q Consensus 259 G--~~p~~~ 265 (479)
| .+|+..
T Consensus 163 G~~s~p~~p 171 (464)
T 2xve_A 163 GHFSTPYVP 171 (464)
T ss_dssp CSSSSBCCC
T ss_pred CCCCCCccC
Confidence 9 677654
No 177
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=98.35 E-value=2.9e-06 Score=84.74 Aligned_cols=100 Identities=16% Similarity=0.176 Sum_probs=78.6
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc--------------cc------c---------------------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--------------AR------L--------------------- 201 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l--------------~~------~--------------------- 201 (479)
-+|+|||+|+.|+.+|..+++.|.+|+++++.+.+. .. .
T Consensus 5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (401)
T 2gqf_A 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI 84 (401)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHHH
Confidence 479999999999999999999999999999876430 00 0
Q ss_pred ----------------------CCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcC---CCcEEEEEeCCCcEEeccEEEE
Q 011700 202 ----------------------FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDS---NGKVVAVNLRDGNRLPTDMVVV 256 (479)
Q Consensus 202 ----------------------~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~---~g~v~~v~~~~g~~i~~D~Vi~ 256 (479)
...++.+.+.+.+++.||++++++.+++++.++ ++. ..+.+.++ ++.+|.||+
T Consensus 85 ~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~-~~v~~~~g-~i~ad~VVl 162 (401)
T 2gqf_A 85 SLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVR-FVLQVNST-QWQCKNLIV 162 (401)
T ss_dssp HHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCC-EEEEETTE-EEEESEEEE
T ss_pred HHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCe-EEEEECCC-EEECCEEEE
Confidence 134555677788888999999999999998631 233 35677666 799999999
Q ss_pred ecCCCCCh
Q 011700 257 GIGIRPNT 264 (479)
Q Consensus 257 a~G~~p~~ 264 (479)
|+|..+..
T Consensus 163 AtG~~s~p 170 (401)
T 2gqf_A 163 ATGGLSMP 170 (401)
T ss_dssp CCCCSSCG
T ss_pred CCCCccCC
Confidence 99998854
No 178
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=98.35 E-value=6.2e-06 Score=81.58 Aligned_cols=98 Identities=17% Similarity=0.220 Sum_probs=72.7
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc-------------------------------------------
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------------- 200 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------- 200 (479)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+-..
T Consensus 6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRPII 85 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSCEE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCCCceEee
Confidence 4899999999999999999999999999986432100
Q ss_pred ------------cCC-HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC-CC--cEEeccEEEEecCCCC
Q 011700 201 ------------LFT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DG--NRLPTDMVVVGIGIRP 262 (479)
Q Consensus 201 ------------~~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~-~g--~~i~~D~Vi~a~G~~p 262 (479)
.++ ..+.+.+.+..++.|++++.++++..+.. +++.+..+... ++ .++.+|.||-|.|...
T Consensus 86 ~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~-~~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S 162 (397)
T 3oz2_A 86 LQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIK-ENGKVAGAKIRHNNEIVDVRAKMVIAADGFES 162 (397)
T ss_dssp EECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEE-ETTEEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred ccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeee-ccceeeeeeecccccceEEEEeEEEeCCcccc
Confidence 001 23455667777888999999999999887 45555444432 33 3688999999999654
No 179
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=98.35 E-value=2.7e-06 Score=81.48 Aligned_cols=100 Identities=12% Similarity=0.196 Sum_probs=71.5
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeecCc----------cc--cccCCHHHHHHHHHHHHhCC-cEEEcCCceEEE
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH----------CM--ARLFTPKIASYYEEYYKSKG-VKFVKGTVLSSF 230 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~----------~l--~~~~~~~~~~~~~~~l~~~G-V~i~~~~~v~~i 230 (479)
.|+|||+|+.|+.+|..+++.|.+|+++++... +. +....+++.+...+.+.+.+ +.++.. .+..+
T Consensus 8 DVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 86 (304)
T 4fk1_A 8 DCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEK-TVVMI 86 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEEC-CEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEee-EEEEe
Confidence 589999999999999999999999999987531 10 01123556666666665555 555544 45666
Q ss_pred EEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700 231 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 231 ~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~ 265 (479)
...+++. ..+.+.+|+++.+|.||+|||.+|...
T Consensus 87 ~~~~~~~-~~v~~~~g~~~~a~~liiATGs~p~~p 120 (304)
T 4fk1_A 87 TKQSTGL-FEIVTKDHTKYLAERVLLATGMQEEFP 120 (304)
T ss_dssp EECTTSC-EEEEETTCCEEEEEEEEECCCCEEECC
T ss_pred eecCCCc-EEEEECCCCEEEeCEEEEccCCccccc
Confidence 5533433 467889999999999999999887543
No 180
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=98.34 E-value=8.7e-07 Score=88.84 Aligned_cols=97 Identities=20% Similarity=0.324 Sum_probs=75.3
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... . . .++ ........+.+++
T Consensus 145 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l-~-----------~---~~~-------~~~~~~l~~~l~~ 199 (408)
T 2gqw_A 145 QSRLLIVGGGVIGLELAATARTAGVH---VSLVETQPRLM-S-----------R---AAP-------ATLADFVARYHAA 199 (408)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSSS-T-----------T---TSC-------HHHHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCE---EEEEEeCCccc-c-----------c---ccC-------HHHHHHHHHHHHH
Confidence 46899999999999999999998876 99999885310 0 0 000 0111234566788
Q ss_pred cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCccc
Q 011700 84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALK 127 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~ 127 (479)
.||+++.++.+.+++ ++ .+.+.+|+++.+|.||+|+|.+|..
T Consensus 200 ~GV~i~~~~~v~~i~-~~-~v~~~~g~~i~~D~vi~a~G~~p~~ 241 (408)
T 2gqw_A 200 QGVDLRFERSVTGSV-DG-VVLLDDGTRIAADMVVVGIGVLAND 241 (408)
T ss_dssp TTCEEEESCCEEEEE-TT-EEEETTSCEEECSEEEECSCEEECC
T ss_pred cCcEEEeCCEEEEEE-CC-EEEECCCCEEEcCEEEECcCCCccH
Confidence 999999999999998 44 7888888899999999999988763
No 181
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=98.33 E-value=2.1e-06 Score=83.06 Aligned_cols=101 Identities=14% Similarity=0.150 Sum_probs=77.0
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc---c--------cccc----CCHHHHHHHHHHHHhCCcEEEcCCce
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH---C--------MARL----FTPKIASYYEEYYKSKGVKFVKGTVL 227 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~---~--------l~~~----~~~~~~~~~~~~l~~~GV~i~~~~~v 227 (479)
.+++|||+|+.|+.+|..|++.|.+|+++++... + .+.. ...++.+.+.+.+++.|++++. .++
T Consensus 9 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v 87 (325)
T 2q7v_A 9 YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGMPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEM-DEV 87 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEE-CCE
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCCCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEe-eeE
Confidence 4799999999999999999999999999998721 0 1110 1246777788888899999998 578
Q ss_pred EEEEEcC-CCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700 228 SSFDVDS-NGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 264 (479)
Q Consensus 228 ~~i~~~~-~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~ 264 (479)
.+++... +.....+.+.+|+++.+|.+++|+|.+|..
T Consensus 88 ~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~ 125 (325)
T 2q7v_A 88 QGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRK 125 (325)
T ss_dssp EEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECC
T ss_pred EEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence 8888731 221124556788899999999999987764
No 182
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=98.33 E-value=4.9e-06 Score=81.80 Aligned_cols=98 Identities=16% Similarity=0.214 Sum_probs=75.1
Q ss_pred CCEEEECCChHHHHHHHHHhhCCC-eEEEEeecC------------ccccc----------------------------c
Q 011700 163 GNAVVIGGGYIGMECAASLVINKI-NVTMVFPEA------------HCMAR----------------------------L 201 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~~------------~~l~~----------------------------~ 201 (479)
.+++|||+|+.|+.+|..|++.|. +|+++++.+ +++.. .
T Consensus 5 ~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 84 (369)
T 3d1c_A 5 HKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNEEH 84 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSTTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCCSS
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCCCCCccccCcccccccCcchhcccCCchhhhhccccccccccccccC
Confidence 469999999999999999999999 999999875 00000 0
Q ss_pred CC-HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700 202 FT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 263 (479)
Q Consensus 202 ~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~ 263 (479)
.+ .++.+.+.+.+++.|++++.++.|.+++.++++ ..+.+.++ ++.+|.||+|+|..+.
T Consensus 85 ~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g-~~~~d~vVlAtG~~~~ 144 (369)
T 3d1c_A 85 ISGETYAEYLQVVANHYELNIFENTVVTNISADDAY--YTIATTTE-TYHADYIFVATGDYNF 144 (369)
T ss_dssp CBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSS--EEEEESSC-CEEEEEEEECCCSTTS
T ss_pred CCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCe--EEEEeCCC-EEEeCEEEECCCCCCc
Confidence 01 345566777778899999999999999874333 24666666 6999999999998754
No 183
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=98.33 E-value=2.1e-06 Score=88.52 Aligned_cols=36 Identities=17% Similarity=0.428 Sum_probs=32.5
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
+.+||+|||||++|+++|+.|+++|++ |+|+|+.+.
T Consensus 2 ~~~DVvIIGgGi~G~~~A~~La~~G~~---V~llE~~~~ 37 (501)
T 2qcu_A 2 ETKDLIVIGGGINGAGIAADAAGRGLS---VLMLEAQDL 37 (501)
T ss_dssp -CBSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSST
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCC---EEEEECCCC
Confidence 568999999999999999999999987 999999763
No 184
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=98.33 E-value=9.7e-07 Score=89.61 Aligned_cols=100 Identities=18% Similarity=0.205 Sum_probs=74.3
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN 82 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (479)
..++++|||+|+.|+.+|..|++.|.+ |+++++.+... . . .++ ......+.+.++
T Consensus 148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~---Vtlv~~~~~~l-~-----~---------~~~-------~~~~~~l~~~l~ 202 (447)
T 1nhp_A 148 EVNNVVVIGSGYIGIEAAEAFAKAGKK---VTVIDILDRPL-G-----V---------YLD-------KEFTDVLTEEME 202 (447)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSTT-T-----T---------TCC-------HHHHHHHHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCe---EEEEecCcccc-c-----c---------cCC-------HHHHHHHHHHHH
Confidence 357999999999999999999998876 99999885311 0 0 000 011133456677
Q ss_pred HcCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCcccc
Q 011700 83 EHGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALKL 128 (479)
Q Consensus 83 ~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~~ 128 (479)
+.|++++.++.|.+++.+++ .+.+ ++.++++|.||+|+|.+|..+
T Consensus 203 ~~gv~i~~~~~v~~i~~~~~v~~v~~-~~~~i~~d~vi~a~G~~p~~~ 249 (447)
T 1nhp_A 203 ANNITIATGETVERYEGDGRVQKVVT-DKNAYDADLVVVAVGVRPNTA 249 (447)
T ss_dssp TTTEEEEESCCEEEEECSSBCCEEEE-SSCEEECSEEEECSCEEESCG
T ss_pred hCCCEEEcCCEEEEEEccCcEEEEEE-CCCEEECCEEEECcCCCCChH
Confidence 88999999999999987643 2445 567899999999999988654
No 185
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=98.33 E-value=1.2e-06 Score=87.49 Aligned_cols=100 Identities=23% Similarity=0.325 Sum_probs=73.5
Q ss_pred CCCEEEECCChHHHHHHHHHhhCC--CeEEEEeecCccccccCCHHHH---------HHHHHHHHhCCcEEEcCCceEEE
Q 011700 162 GGNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCMARLFTPKIA---------SYYEEYYKSKGVKFVKGTVLSSF 230 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l~~~~~~~~~---------~~~~~~l~~~GV~i~~~~~v~~i 230 (479)
+|||+|||+|+.|+.+|..|++.+ .+|+++++++..........+. ..-.+.+.++||+++.+ ++++|
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~-~v~~i 80 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHD-SALGI 80 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECS-CEEEE
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEe-EEEEE
Confidence 789999999999999999998765 5899999887543221111111 00123456789999876 58888
Q ss_pred EEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhh
Q 011700 231 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL 266 (479)
Q Consensus 231 ~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l 266 (479)
+. +.+ .+.+.+|+++.+|.+++|+|.+++..-
T Consensus 81 d~--~~~--~v~~~~g~~i~yd~LviAtG~~~~~~~ 112 (401)
T 3vrd_B 81 DP--DKK--LVKTAGGAEFAYDRCVVAPGIDLLYDK 112 (401)
T ss_dssp ET--TTT--EEEETTSCEEECSEEEECCCEEECGGG
T ss_pred Ec--cCc--EEEecccceeecceeeeccCCccccCC
Confidence 76 232 467889999999999999999887653
No 186
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=98.31 E-value=1.3e-06 Score=91.59 Aligned_cols=35 Identities=29% Similarity=0.418 Sum_probs=32.3
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
.+||+|||+|++|+++|..|+++|.+ |+|+|+.+.
T Consensus 126 ~~~v~viG~G~aG~~aa~~~~~~g~~---v~~~e~~~~ 160 (572)
T 1d4d_A 126 TTDVVIIGSGGAGLAAAVSARDAGAK---VILLEKEPI 160 (572)
T ss_dssp ECSEEEECCSHHHHHHHHHHHSSSCC---EEEECSSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCC
Confidence 47999999999999999999999887 999999875
No 187
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=98.31 E-value=9.1e-07 Score=88.30 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=31.6
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
++|+||||||+|+++|..|+++|++ |+|+|+.+.
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~---v~v~Er~~~ 35 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIK---VTIYERNSA 35 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCC---EEEEecCCC
Confidence 5899999999999999999999987 999999864
No 188
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=98.31 E-value=4.3e-07 Score=91.11 Aligned_cols=98 Identities=22% Similarity=0.332 Sum_probs=74.5
Q ss_pred CCEEEECCChHHHHHHHHHhh---CCCeEEEEeecCccccc----------cCCHHHHHHHHHHHHhCCcEEEcCCceEE
Q 011700 163 GNAVVIGGGYIGMECAASLVI---NKINVTMVFPEAHCMAR----------LFTPKIASYYEEYYKSKGVKFVKGTVLSS 229 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~---~g~~Vtlv~~~~~~l~~----------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~ 229 (479)
++|+|||+|+.|+++|..|++ .|.+|+++++++.+... ....++...+.+.+++.|++++.+ ++++
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~ 80 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEG-TVEK 80 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEEC-EEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEe-eEEE
Confidence 579999999999999999999 89999999988754211 012233344667778889999988 7888
Q ss_pred EEEcCCCcEEEEEeCCCc----EEeccEEEEecCCCCChh
Q 011700 230 FDVDSNGKVVAVNLRDGN----RLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 230 i~~~~~g~v~~v~~~~g~----~i~~D~Vi~a~G~~p~~~ 265 (479)
++. +.+ .+.+.+++ ++++|.||+|+|.+|+..
T Consensus 81 i~~--~~~--~V~~~~g~~~~~~~~~d~lViAtG~~~~~~ 116 (409)
T 3h8l_A 81 IDA--KSS--MVYYTKPDGSMAEEEYDYVIVGIGAHLATE 116 (409)
T ss_dssp EET--TTT--EEEEECTTSCEEEEECSEEEECCCCEECGG
T ss_pred EeC--CCC--EEEEccCCcccceeeCCEEEECCCCCcCcc
Confidence 875 222 34555554 399999999999988865
No 189
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=98.31 E-value=1.8e-06 Score=89.78 Aligned_cols=102 Identities=17% Similarity=0.182 Sum_probs=80.4
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc-------------------------c---------cc--CCHHH
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------------------------A---------RL--FTPKI 206 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------~---------~~--~~~~~ 206 (479)
.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+- + .. -.+++
T Consensus 10 ~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ei 89 (545)
T 3uox_A 10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPEM 89 (545)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHHH
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHHH
Confidence 479999999999999999999999999999875320 0 00 12577
Q ss_pred HHHHHHHHHhCCc--EEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecC--CCCCh
Q 011700 207 ASYYEEYYKSKGV--KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG--IRPNT 264 (479)
Q Consensus 207 ~~~~~~~l~~~GV--~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G--~~p~~ 264 (479)
.+.+.+..++.|+ +++++++|++++.+++.....|.+.+|+++.+|.||+|+| .+|..
T Consensus 90 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~ 151 (545)
T 3uox_A 90 LRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRM 151 (545)
T ss_dssp HHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---
T ss_pred HHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcC
Confidence 7788888888887 7889999999987555455678889999999999999999 55554
No 190
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.30 E-value=8.8e-07 Score=90.22 Aligned_cols=97 Identities=20% Similarity=0.316 Sum_probs=72.9
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... |.+. ........+.+++
T Consensus 171 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l-------------------~~~~----~~~~~~l~~~l~~ 224 (458)
T 1lvl_A 171 PQHLVVVGGGYIGLELGIAYRKLGAQ---VSVVEARERIL-------------------PTYD----SELTAPVAESLKK 224 (458)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCE---EEEECSSSSSS-------------------TTSC----HHHHHHHHHHHHH
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCe---EEEEEcCCccc-------------------cccC----HHHHHHHHHHHHH
Confidence 36899999999999999999998876 99999885310 0000 0111234566778
Q ss_pred cCcEEEeCceEEEEECCCcEEEeC--CC--cEEEeceEEeecCCCcccc
Q 011700 84 HGIELVLGTRVKSADVRRKTLVTA--TG--ETISYKILIIATGARALKL 128 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~~--~g--~~~~~d~lviAtG~~~~~~ 128 (479)
.||+++.++.|.+++. ++ +.+. +| +++.+|.||+|+|.+|..+
T Consensus 225 ~gv~i~~~~~v~~i~~-~~-v~v~~~~G~~~~i~~D~vv~a~G~~p~~~ 271 (458)
T 1lvl_A 225 LGIALHLGHSVEGYEN-GC-LLANDGKGGQLRLEADRVLVAVGRRPRTK 271 (458)
T ss_dssp HTCEEETTCEEEEEET-TE-EEEECSSSCCCEECCSCEEECCCEEECCS
T ss_pred CCCEEEECCEEEEEEe-CC-EEEEECCCceEEEECCEEEECcCCCcCCC
Confidence 8999999999999987 44 4433 45 6899999999999988754
No 191
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=98.30 E-value=9.3e-07 Score=87.86 Aligned_cols=99 Identities=16% Similarity=0.204 Sum_probs=74.8
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... . . ..+ ......+.+.+++
T Consensus 145 ~~~v~ViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~~-~-----------~---~~~-------~~~~~~l~~~l~~ 199 (384)
T 2v3a_A 145 KRRVLLLGAGLIGCEFANDLSSGGYQ---LDVVAPCEQVM-P-----------G---LLH-------PAAAKAVQAGLEG 199 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSSS-T-----------T---TSC-------HHHHHHHHHHHHT
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCe---EEEEecCcchh-h-----------c---ccC-------HHHHHHHHHHHHH
Confidence 46899999999999999999998876 99999875310 0 0 000 0011334566778
Q ss_pred cCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCccc
Q 011700 84 HGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALK 127 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~ 127 (479)
.|++++.+++|.+++.++. .+.+.+|+++.+|.||+|+|.+|..
T Consensus 200 ~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~~ 245 (384)
T 2v3a_A 200 LGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRT 245 (384)
T ss_dssp TTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred cCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCCcCH
Confidence 8999999999999876543 5667788899999999999988764
No 192
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=98.30 E-value=9.6e-07 Score=96.76 Aligned_cols=38 Identities=26% Similarity=0.473 Sum_probs=32.6
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCC-CCCcEEEEcCCCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGV-PPGELCIISEEPV 41 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~-~~~~V~lie~~~~ 41 (479)
|+.++||||||||++|+++|++|+++|. + |+|||+.+.
T Consensus 1 m~~~~dVvIIGgGi~Gls~A~~La~~G~~~---V~vlE~~~~ 39 (830)
T 1pj5_A 1 MASTPRIVIIGAGIVGTNLADELVTRGWNN---ITVLDQGPL 39 (830)
T ss_dssp ---CCCEEEECCSHHHHHHHHHHHHTTCCC---EEEECSSCT
T ss_pred CCCCCCEEEECcCHHHHHHHHHHHhCCCCc---EEEEeCCCC
Confidence 6667999999999999999999999997 5 999999864
No 193
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=98.30 E-value=6.6e-07 Score=86.59 Aligned_cols=35 Identities=23% Similarity=0.238 Sum_probs=32.0
Q ss_pred cCeEEEECCchHHHHHHHHHHHc--CCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKR--GVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~--g~~~~~V~lie~~~~ 41 (479)
++||+|||||++|+++|++|+++ |++ |+|||+.+.
T Consensus 79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~---V~LiEk~~~ 115 (344)
T 3jsk_A 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLR---ITIVEAGVA 115 (344)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHCTTSC---EEEEESSSS
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCE---EEEEeCCCc
Confidence 58999999999999999999997 776 999999864
No 194
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=98.30 E-value=4e-06 Score=83.62 Aligned_cols=101 Identities=22% Similarity=0.183 Sum_probs=79.5
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc-------------------------------------------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA------------------------------------------- 199 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------- 199 (479)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~~ 86 (399)
T 2x3n_A 7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGEL 86 (399)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETTEE
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCCCE
Confidence 4799999999999999999999999999998643200
Q ss_pred --c-------------cC-CHHHHHHHHHHHHhC-CcEEEcCCceEEEEEcCCCcEE-EEEeCCCcEEeccEEEEecCCC
Q 011700 200 --R-------------LF-TPKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVV-AVNLRDGNRLPTDMVVVGIGIR 261 (479)
Q Consensus 200 --~-------------~~-~~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~g~v~-~v~~~~g~~i~~D~Vi~a~G~~ 261 (479)
. .+ ...+.+.+.+.+++. |++++.++++++++.+++ .+. .+.+.+|+++.+|.||.|.|..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~-~v~g~v~~~~g~~~~ad~vV~AdG~~ 165 (399)
T 2x3n_A 87 LRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDER-HAIDQVRLNDGRVLRPRVVVGADGIA 165 (399)
T ss_dssp EEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTT-SCEEEEEETTSCEEEEEEEEECCCTT
T ss_pred EEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCC-ceEEEEEECCCCEEECCEEEECCCCC
Confidence 0 00 124566677777777 999999999999987443 342 5778899899999999999987
Q ss_pred CCh
Q 011700 262 PNT 264 (479)
Q Consensus 262 p~~ 264 (479)
+..
T Consensus 166 s~v 168 (399)
T 2x3n_A 166 SYV 168 (399)
T ss_dssp CHH
T ss_pred hHH
Confidence 764
No 195
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=98.29 E-value=4.4e-06 Score=86.46 Aligned_cols=104 Identities=13% Similarity=0.186 Sum_probs=81.0
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecC--ccc-----------cccCCHHHHHHHHHHHHhCCcEEEcCCce
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA--HCM-----------ARLFTPKIASYYEEYYKSKGVKFVKGTVL 227 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~--~~l-----------~~~~~~~~~~~~~~~l~~~GV~i~~~~~v 227 (479)
...+++|||+|+.|+.+|..|++.|.+|+++++.. .+. +....+++.+.+.+.+++.|++++.++++
T Consensus 211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~~~v 290 (521)
T 1hyu_A 211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQSA 290 (521)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECSCCE
T ss_pred CcccEEEECCcHHHHHHHHHHHhCCCeEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcCCEE
Confidence 34579999999999999999999999999997531 111 01123577888888899999999999999
Q ss_pred EEEEEcCC-CcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700 228 SSFDVDSN-GKVVAVNLRDGNRLPTDMVVVGIGIRPNT 264 (479)
Q Consensus 228 ~~i~~~~~-g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~ 264 (479)
.++..+.+ +....+.+.+|+++.+|.|++|+|.+|..
T Consensus 291 ~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~ 328 (521)
T 1hyu_A 291 SKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRN 328 (521)
T ss_dssp EEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred EEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCC
Confidence 99975221 22346788889899999999999987654
No 196
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*
Probab=98.29 E-value=1.1e-06 Score=93.36 Aligned_cols=36 Identities=22% Similarity=0.305 Sum_probs=32.7
Q ss_pred CcCeEEEECCchHHHHHHHHHHH-cCCCCCcEEEEcCCCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTK-RGVPPGELCIISEEPV 41 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~-~g~~~~~V~lie~~~~ 41 (479)
.++||+||||||+|+++|..|++ .|.+ |+|||+.+.
T Consensus 31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~---V~viEr~~~ 67 (639)
T 2dkh_A 31 SQVDVLIVGCGPAGLTLAAQLAAFPDIR---TCIVEQKEG 67 (639)
T ss_dssp SEEEEEEECCSHHHHHHHHHHTTCTTSC---EEEECSSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHhCCCC---EEEEeCCCC
Confidence 35799999999999999999999 8987 999999864
No 197
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=98.29 E-value=1.4e-06 Score=88.43 Aligned_cols=98 Identities=18% Similarity=0.111 Sum_probs=75.2
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... +.+. ......+.+.+++
T Consensus 167 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l-------------------~~~~----~~~~~~l~~~l~~ 220 (450)
T 1ges_A 167 PERVAVVGAGYIGVELGGVINGLGAK---THLFEMFDAPL-------------------PSFD----PMISETLVEVMNA 220 (450)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS-------------------TTSC----HHHHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCE---EEEEEeCCchh-------------------hhhh----HHHHHHHHHHHHH
Confidence 36899999999999999999998876 99999875310 0000 0111234566778
Q ss_pred cCcEEEeCceEEEEECCC---cEEEeCCCcEEEeceEEeecCCCccc
Q 011700 84 HGIELVLGTRVKSADVRR---KTLVTATGETISYKILIIATGARALK 127 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~---~~v~~~~g~~~~~d~lviAtG~~~~~ 127 (479)
.|++++.+++|.+++.++ ..+.+.+|+++.+|.||+|+|.+|..
T Consensus 221 ~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~ 267 (450)
T 1ges_A 221 EGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPAN 267 (450)
T ss_dssp HSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESC
T ss_pred CCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcCC
Confidence 899999999999998643 36777888899999999999998865
No 198
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=98.28 E-value=1.3e-06 Score=89.02 Aligned_cols=99 Identities=15% Similarity=0.259 Sum_probs=73.7
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... +.+. ......+.+.+++
T Consensus 169 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l-------------------~~~~----~~~~~~l~~~l~~ 222 (464)
T 2eq6_A 169 PKRLLVIGGGAVGLELGQVYRRLGAE---VTLIEYMPEIL-------------------PQGD----PETAALLRRALEK 222 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS-------------------TTSC----HHHHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCe---EEEEEcCCccc-------------------cccC----HHHHHHHHHHHHh
Confidence 36899999999999999999998876 99999875310 0000 0111234566788
Q ss_pred cCcEEEeCceEEEEECCCc--EEEeC-C--Cc--EEEeceEEeecCCCcccc
Q 011700 84 HGIELVLGTRVKSADVRRK--TLVTA-T--GE--TISYKILIIATGARALKL 128 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~--~v~~~-~--g~--~~~~d~lviAtG~~~~~~ 128 (479)
.||+++.+++|.+++.++. .+.+. + |+ ++.+|.||+|+|.+|...
T Consensus 223 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~ 274 (464)
T 2eq6_A 223 EGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTE 274 (464)
T ss_dssp TTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEESCT
T ss_pred cCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCCC
Confidence 9999999999999986543 34444 5 65 899999999999988654
No 199
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=98.28 E-value=4.3e-07 Score=90.98 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=31.9
Q ss_pred cCeEEEECCchHHHHHHHHHHHc--CCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKR--GVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~--g~~~~~V~lie~~~~ 41 (479)
.+||+|||||++|+++|++|+++ |.+ |+|||+...
T Consensus 36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~---V~vlE~~~~ 72 (405)
T 3c4n_A 36 AFDIVVIGAGRMGAACAFYLRQLAPGRS---LLLVEEGGL 72 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHCTTSC---EEEECSSCS
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCCCe---EEEEeCCCC
Confidence 48999999999999999999999 887 999999753
No 200
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=98.28 E-value=1.8e-06 Score=83.68 Aligned_cols=99 Identities=11% Similarity=0.182 Sum_probs=76.3
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEee----cCcc------------ccc----cCCHHHHHHHHHHHHhCCcEEE
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFP----EAHC------------MAR----LFTPKIASYYEEYYKSKGVKFV 222 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~----~~~~------------l~~----~~~~~~~~~~~~~l~~~GV~i~ 222 (479)
.+++|||+|+.|+.+|..|++.|.+|+++++ ...+ .+. ....++.+.+.+.+++.|++++
T Consensus 9 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~ 88 (333)
T 1vdc_A 9 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIF 88 (333)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEE
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCEEE
Confidence 5799999999999999999999999999998 2211 111 0124677778888889999999
Q ss_pred cCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700 223 KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 223 ~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~ 265 (479)
.++ +..++.. ++. ..+.+ +++++.+|.|++|+|.+|...
T Consensus 89 ~~~-v~~i~~~-~~~-~~v~~-~~~~~~~~~vv~A~G~~~~~~ 127 (333)
T 1vdc_A 89 TET-VTKVDFS-SKP-FKLFT-DSKAILADAVILAIGAVAKRL 127 (333)
T ss_dssp CCC-CCEEECS-SSS-EEEEC-SSEEEEEEEEEECCCEEECCC
T ss_pred EeE-EEEEEEc-CCE-EEEEE-CCcEEEcCEEEECCCCCcCCC
Confidence 987 8888763 332 24555 778899999999999877653
No 201
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=98.28 E-value=2.9e-06 Score=86.35 Aligned_cols=52 Identities=23% Similarity=0.288 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC
Q 011700 205 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI 260 (479)
Q Consensus 205 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~ 260 (479)
.+.+.+.+.+.+ ++++++++|++|+.++++ ..|.+.+|+++.+|.||+|++.
T Consensus 236 ~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~--~~v~~~~g~~~~ad~vi~a~p~ 287 (470)
T 3i6d_A 236 TLVEEIEKQLKL--TKVYKGTKVTKLSHSGSC--YSLELDNGVTLDADSVIVTAPH 287 (470)
T ss_dssp HHHHHHHHTCCS--EEEECSCCEEEEEECSSS--EEEEESSSCEEEESEEEECSCH
T ss_pred HHHHHHHHhcCC--CEEEeCCceEEEEEcCCe--EEEEECCCCEEECCEEEECCCH
Confidence 444444443332 799999999999984443 3588889989999999999874
No 202
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=98.27 E-value=1.3e-06 Score=92.07 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=32.1
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
++||||||||+||++||++|++.|.+ |+|||+.+.
T Consensus 18 ~~DVvVVG~G~AGl~AAl~aa~~G~~---V~vlEK~~~ 52 (621)
T 2h88_A 18 EFDAVVVGAGGAGLRAAFGLSEAGFN---TACVTKLFP 52 (621)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCG
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCc---EEEEeccCC
Confidence 47999999999999999999999987 999999853
No 203
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.27 E-value=7.3e-07 Score=88.07 Aligned_cols=99 Identities=22% Similarity=0.366 Sum_probs=72.9
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc----------ccCC-HHHHHHHHHHHHhCCcEEEcCCceEE
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA----------RLFT-PKIASYYEEYYKSKGVKFVKGTVLSS 229 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~----------~~~~-~~~~~~~~~~l~~~GV~i~~~~~v~~ 229 (479)
.+.+++|||+|+.|+.+|..|++.| +|+++++.+.... ...+ .++.....+.+++.||+++.+++++.
T Consensus 7 ~~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v~~ 85 (367)
T 1xhc_A 7 HGSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKL 85 (367)
T ss_dssp --CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEE
T ss_pred CCCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEECCEEEE
Confidence 4789999999999999999999999 9999998864211 0011 11112234566788999999999999
Q ss_pred EEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700 230 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 230 i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~ 265 (479)
++. +.+ .|. .+++++.+|.+++|||.+|...
T Consensus 86 id~--~~~--~V~-~~g~~~~~d~lViATGs~p~~p 116 (367)
T 1xhc_A 86 IDR--GRK--VVI-TEKGEVPYDTLVLATGARAREP 116 (367)
T ss_dssp EET--TTT--EEE-ESSCEEECSEEEECCCEEECCC
T ss_pred EEC--CCC--EEE-ECCcEEECCEEEECCCCCCCCC
Confidence 875 222 244 5778999999999999888754
No 204
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=98.27 E-value=4.3e-07 Score=91.76 Aligned_cols=98 Identities=20% Similarity=0.273 Sum_probs=74.3
Q ss_pred CCEEEECCChHHHHHHHHHhh--CCCeEEEEeecCccccccC----------CHHHHHHHHHHHHhCCcEEEcCCceEEE
Q 011700 163 GNAVVIGGGYIGMECAASLVI--NKINVTMVFPEAHCMARLF----------TPKIASYYEEYYKSKGVKFVKGTVLSSF 230 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l~~~~----------~~~~~~~~~~~l~~~GV~i~~~~~v~~i 230 (479)
++++|||+|+.|+.+|..|++ .+.+|+++++.+.+..... ..++...+.+.+++.||+++.+ +++.+
T Consensus 3 ~~vvIIGgG~aGl~aA~~L~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i 81 (430)
T 3h28_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINE-KAESI 81 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECS-CEEEE
T ss_pred CCEEEECccHHHHHHHHHHHcCCCCCeEEEECCCCCCCcCCCcchhccCccCHHHHHHHHHHHHHhcCCEEEEE-EEEEE
Confidence 689999999999999999999 7899999999876532110 1111122345566789999975 78888
Q ss_pred EEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700 231 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 231 ~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~ 265 (479)
+.+ .+ .+.+.+++++.+|.+++|+|.+|+.+
T Consensus 82 d~~--~~--~v~~~~g~~i~~d~liiAtG~~~~~p 112 (430)
T 3h28_A 82 DPD--AN--TVTTQSGKKIEYDYLVIATGPKLVFG 112 (430)
T ss_dssp ETT--TT--EEEETTCCEEECSEEEECCCCEEECC
T ss_pred ECC--CC--EEEECCCcEEECCEEEEcCCcccccC
Confidence 762 22 46778888999999999999987654
No 205
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}
Probab=98.26 E-value=2.4e-06 Score=88.62 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=34.9
Q ss_pred HH-cCcEEEeCceEEEEECCC--c--EEEeCCCcEEEeceEEeecCCCccc
Q 011700 82 NE-HGIELVLGTRVKSADVRR--K--TLVTATGETISYKILIIATGARALK 127 (479)
Q Consensus 82 ~~-~gv~~~~~~~v~~i~~~~--~--~v~~~~g~~~~~d~lviAtG~~~~~ 127 (479)
.+ .|++++.+ +|++++.+. . .+.+.+|.++.+|.||.|+|.....
T Consensus 186 ~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~~ 235 (526)
T 2pyx_A 186 TQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSLL 235 (526)
T ss_dssp HHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCCC
T ss_pred HhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchHH
Confidence 45 79999999 699987542 3 4556677789999999999987544
No 206
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=98.26 E-value=1.6e-06 Score=87.05 Aligned_cols=99 Identities=21% Similarity=0.259 Sum_probs=76.3
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... .. .+ + ......+.+.+++
T Consensus 143 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtvv~~~~~~l------~~-~~--------~-------~~~~~~l~~~l~~ 197 (410)
T 3ef6_A 143 ATRLLIVGGGLIGCEVATTARKLGLS---VTILEAGDELL------VR-VL--------G-------RRIGAWLRGLLTE 197 (410)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS------HH-HH--------C-------HHHHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCccc------hh-hc--------C-------HHHHHHHHHHHHH
Confidence 46899999999999999999998876 99999885310 00 00 0 0111334566778
Q ss_pred cCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCccc
Q 011700 84 HGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALK 127 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~ 127 (479)
.||+++.++.+.+++.+++ .+.+.+|+++.+|.||+|+|.+|..
T Consensus 198 ~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~~ 243 (410)
T 3ef6_A 198 LGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAEPAD 243 (410)
T ss_dssp HTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCEEECC
T ss_pred CCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCCeecH
Confidence 8999999999999987654 5788899999999999999998864
No 207
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=98.26 E-value=1.6e-06 Score=88.38 Aligned_cols=98 Identities=19% Similarity=0.148 Sum_probs=74.9
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... +.+. ......+.+.+++
T Consensus 166 ~~~vvVvGgG~~g~e~A~~l~~~G~~---Vtlv~~~~~~l-------------------~~~~----~~~~~~l~~~l~~ 219 (463)
T 2r9z_A 166 PKRVAIIGAGYIGIELAGLLRSFGSE---VTVVALEDRLL-------------------FQFD----PLLSATLAENMHA 219 (463)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS-------------------TTSC----HHHHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCE---EEEEEcCCccc-------------------cccC----HHHHHHHHHHHHH
Confidence 36899999999999999999998876 99999875310 0000 0011234566788
Q ss_pred cCcEEEeCceEEEEECCC--cEEEeCCCc-EEEeceEEeecCCCccc
Q 011700 84 HGIELVLGTRVKSADVRR--KTLVTATGE-TISYKILIIATGARALK 127 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~--~~v~~~~g~-~~~~d~lviAtG~~~~~ 127 (479)
.|++++.++.|.+++.++ ..+.+.+|+ ++.+|.||+|+|.+|..
T Consensus 220 ~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~ 266 (463)
T 2r9z_A 220 QGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNT 266 (463)
T ss_dssp TTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEESC
T ss_pred CCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCC
Confidence 999999999999987643 456777888 89999999999998865
No 208
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=98.25 E-value=1.4e-06 Score=87.09 Aligned_cols=97 Identities=19% Similarity=0.352 Sum_probs=73.9
Q ss_pred CCEEEECCChHHHHHHHHHhhCCC--eEEEEeecCccc------c-cc-----CCHHHHHHHHHHHHhCCcEEEcCCceE
Q 011700 163 GNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCM------A-RL-----FTPKIASYYEEYYKSKGVKFVKGTVLS 228 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~--~Vtlv~~~~~~l------~-~~-----~~~~~~~~~~~~l~~~GV~i~~~~~v~ 228 (479)
++++|||+|+.|+.+|..|++.|. +|+++++.+.+. + .. ...++.....+.+++.+|+++. ++++
T Consensus 2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-~~v~ 80 (404)
T 3fg2_P 2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELIS-DRMV 80 (404)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEEC-CCEE
T ss_pred CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEE-EEEE
Confidence 689999999999999999999998 899999876321 1 00 0111222235567788999999 8899
Q ss_pred EEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700 229 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 264 (479)
Q Consensus 229 ~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~ 264 (479)
+++. +.+ .+.+.+|+++.+|.+++|||.+|..
T Consensus 81 ~id~--~~~--~v~~~~g~~~~~d~lvlAtG~~p~~ 112 (404)
T 3fg2_P 81 SIDR--EGR--KLLLASGTAIEYGHLVLATGARNRM 112 (404)
T ss_dssp EEET--TTT--EEEESSSCEEECSEEEECCCEEECC
T ss_pred EEEC--CCC--EEEECCCCEEECCEEEEeeCCCccC
Confidence 9976 232 4777899999999999999987664
No 209
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.25 E-value=1.5e-06 Score=88.50 Aligned_cols=99 Identities=18% Similarity=0.274 Sum_probs=72.9
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... |.+. ........+.+++
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l-------------------~~~~----~~~~~~l~~~l~~ 223 (455)
T 1ebd_A 170 PKSLVVIGGGYIGIELGTAYANFGTK---VTILEGAGEIL-------------------SGFE----KQMAAIIKKRLKK 223 (455)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSSS-------------------TTSC----HHHHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCCccc-------------------cccC----HHHHHHHHHHHHH
Confidence 46899999999999999999998876 99999875310 0000 0111234566778
Q ss_pred cCcEEEeCceEEEEECCCcE--EEeC---CCcEEEeceEEeecCCCcccc
Q 011700 84 HGIELVLGTRVKSADVRRKT--LVTA---TGETISYKILIIATGARALKL 128 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~--v~~~---~g~~~~~d~lviAtG~~~~~~ 128 (479)
.|++++.++++.+++.++.. +.+. +++++.+|.+|+|+|.+|...
T Consensus 224 ~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~ 273 (455)
T 1ebd_A 224 KGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTD 273 (455)
T ss_dssp TTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEESCS
T ss_pred CCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCcccC
Confidence 99999999999999865433 3333 456799999999999988653
No 210
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=98.23 E-value=2.2e-06 Score=86.07 Aligned_cols=99 Identities=21% Similarity=0.239 Sum_probs=75.9
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... . ...+ ......+.+.+++
T Consensus 152 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtvv~~~~~~l-~--------------~~~~-------~~~~~~l~~~l~~ 206 (415)
T 3lxd_A 152 AKNAVVIGGGYIGLEAAAVLTKFGVN---VTLLEALPRVL-A--------------RVAG-------EALSEFYQAEHRA 206 (415)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSTT-T--------------TTSC-------HHHHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCe---EEEEecCCchh-h--------------hhcC-------HHHHHHHHHHHHh
Confidence 46899999999999999999998876 99999886311 0 0000 0111334566778
Q ss_pred cCcEEEeCceEEEEECCCc---EEEeCCCcEEEeceEEeecCCCccc
Q 011700 84 HGIELVLGTRVKSADVRRK---TLVTATGETISYKILIIATGARALK 127 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~---~v~~~~g~~~~~d~lviAtG~~~~~ 127 (479)
.|++++.++.|.+++.++. .+.+.+|+++.+|.||+|+|.+|..
T Consensus 207 ~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~ 253 (415)
T 3lxd_A 207 HGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCV 253 (415)
T ss_dssp TTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEESC
T ss_pred CCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCccCh
Confidence 9999999999999987542 4677889999999999999998864
No 211
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=98.23 E-value=2.3e-06 Score=86.43 Aligned_cols=100 Identities=24% Similarity=0.374 Sum_probs=75.0
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCC--eEEEEeecCcccc------c-cC-----CHHHHHHHHHHHHhCCcEEEcCCce
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMA------R-LF-----TPKIASYYEEYYKSKGVKFVKGTVL 227 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~--~Vtlv~~~~~~l~------~-~~-----~~~~~~~~~~~l~~~GV~i~~~~~v 227 (479)
..+++|||+|+.|+.+|..|++.|. +|+++++.+.+.. . .+ ..++.....+.+++.||+++.++.+
T Consensus 4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v 83 (431)
T 1q1r_A 4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV 83 (431)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCEE
Confidence 3689999999999999999999997 7999998754210 0 00 0111111235667889999999999
Q ss_pred EEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700 228 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 228 ~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~ 265 (479)
..++.. +. .+.+.+|+++.+|.+++|+|.+|+..
T Consensus 84 ~~i~~~-~~---~v~~~~g~~~~~d~lviAtG~~p~~~ 117 (431)
T 1q1r_A 84 TAINRD-RQ---QVILSDGRALDYDRLVLATGGRPRPL 117 (431)
T ss_dssp EEEETT-TT---EEEETTSCEEECSEEEECCCEEECCC
T ss_pred EEEECC-CC---EEEECCCCEEECCEEEEcCCCCccCC
Confidence 999752 22 46778888999999999999988764
No 212
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=98.22 E-value=4.3e-06 Score=83.88 Aligned_cols=100 Identities=15% Similarity=0.197 Sum_probs=78.8
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc--------ccc----------------------------------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC--------MAR---------------------------------- 200 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~--------l~~---------------------------------- 200 (479)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+.. .+.
T Consensus 6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (421)
T 3nix_A 6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFVRGKEIA 85 (421)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEEETTEEE
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEEeCCeeE
Confidence 47999999999999999999999999999986410 000
Q ss_pred ----------------cCC-HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCc--EEeccEEEEecCCC
Q 011700 201 ----------------LFT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIR 261 (479)
Q Consensus 201 ----------------~~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~Vi~a~G~~ 261 (479)
.++ ..+.+.+.+.+++.|++++.+++|++++.++++....+.+.+|+ ++.+|.||.|+|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~ 165 (421)
T 3nix_A 86 DFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYG 165 (421)
T ss_dssp EEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGG
T ss_pred EEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCc
Confidence 001 24556677777788999999999999987555555567778887 79999999999987
Q ss_pred C
Q 011700 262 P 262 (479)
Q Consensus 262 p 262 (479)
+
T Consensus 166 s 166 (421)
T 3nix_A 166 R 166 (421)
T ss_dssp C
T ss_pred h
Confidence 6
No 213
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=98.21 E-value=3e-06 Score=88.42 Aligned_cols=36 Identities=19% Similarity=0.461 Sum_probs=33.0
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
.++||+|||||++|+++|+.|+++|++ |+|+|+.+.
T Consensus 17 ~~~DVvVIGgGi~Gl~~A~~La~~G~~---V~LlEk~d~ 52 (561)
T 3da1_A 17 KQLDLLVIGGGITGAGIALDAQVRGIQ---TGLVEMNDF 52 (561)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHTTTCC---EEEEESSST
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCc---EEEEECCCC
Confidence 358999999999999999999999998 999999854
No 214
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=98.21 E-value=5e-06 Score=84.32 Aligned_cols=102 Identities=21% Similarity=0.213 Sum_probs=76.2
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCC--eEEEEeecCccc----cc---------------------------------c-
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCM----AR---------------------------------L- 201 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~--~Vtlv~~~~~~l----~~---------------------------------~- 201 (479)
..+|+|||+|+.|+.+|..|++.|. +|+++++.+.+. .. .
T Consensus 6 ~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~~ 85 (447)
T 2gv8_A 6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY 85 (447)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCchh
Confidence 5789999999999999999999999 999999874320 00 0
Q ss_pred -------------C--------------CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC---Cc---E
Q 011700 202 -------------F--------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---GN---R 248 (479)
Q Consensus 202 -------------~--------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~---g~---~ 248 (479)
+ ..++.+.+.+..++.++.++++++|++++.. ++. ..|.+.+ |+ +
T Consensus 86 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~-~~~-~~V~~~~~~~G~~~~~ 163 (447)
T 2gv8_A 86 RDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKK-DGS-WVVTYKGTKAGSPISK 163 (447)
T ss_dssp TTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEE-TTE-EEEEEEESSTTCCEEE
T ss_pred hhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeC-CCe-EEEEEeecCCCCeeEE
Confidence 0 1245666777777778889999999999874 332 2355544 66 7
Q ss_pred EeccEEEEecCC--CCChh
Q 011700 249 LPTDMVVVGIGI--RPNTS 265 (479)
Q Consensus 249 i~~D~Vi~a~G~--~p~~~ 265 (479)
+.+|.||+|+|. .|+..
T Consensus 164 ~~~d~VVvAtG~~s~p~~p 182 (447)
T 2gv8_A 164 DIFDAVSICNGHYEVPYIP 182 (447)
T ss_dssp EEESEEEECCCSSSSBCBC
T ss_pred EEeCEEEECCCCCCCCCCC
Confidence 999999999998 66543
No 215
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=98.21 E-value=3.6e-06 Score=85.08 Aligned_cols=96 Identities=14% Similarity=0.190 Sum_probs=75.5
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||+.|+..|..++++|.+ |+++++.+... +.+. ........+.+++
T Consensus 147 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~ll-------------------~~~d----~~~~~~~~~~l~~ 200 (437)
T 4eqs_A 147 VDKVLVVGAGYVSLEVLENLYERGLH---PTLIHRSDKIN-------------------KLMD----ADMNQPILDELDK 200 (437)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCE---EEEEESSSCCS-------------------TTSC----GGGGHHHHHHHHH
T ss_pred CcEEEEECCccchhhhHHHHHhcCCc---ceeeeeecccc-------------------cccc----chhHHHHHHHhhc
Confidence 35899999999999999999999876 99999875310 0000 1112345667888
Q ss_pred cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCccc
Q 011700 84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALK 127 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~ 127 (479)
.||+++.+++|.+++. ..+.+.+++++.+|.+++|+|.+|..
T Consensus 201 ~gV~i~~~~~v~~~~~--~~v~~~~g~~~~~D~vl~a~G~~Pn~ 242 (437)
T 4eqs_A 201 REIPYRLNEEINAING--NEITFKSGKVEHYDMIIEGVGTHPNS 242 (437)
T ss_dssp TTCCEEESCCEEEEET--TEEEETTSCEEECSEEEECCCEEESC
T ss_pred cceEEEeccEEEEecC--CeeeecCCeEEeeeeEEEEeceecCc
Confidence 9999999999998764 56888899999999999999988864
No 216
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=98.21 E-value=7.1e-06 Score=79.00 Aligned_cols=98 Identities=11% Similarity=0.183 Sum_probs=75.0
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc---c--------ccc---cCCHHHHHHHHHHHHhCCcEEEcCCceE
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH---C--------MAR---LFTPKIASYYEEYYKSKGVKFVKGTVLS 228 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~---~--------l~~---~~~~~~~~~~~~~l~~~GV~i~~~~~v~ 228 (479)
.+++|||+|+.|+.+|..|++.|.+|+++++... + .+. ....++.+.+.+.+++.|++++. .++.
T Consensus 17 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~ 95 (319)
T 3cty_A 17 FDVVIVGAGAAGFSAAVYAARSGFSVAILDKAVAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREG-VEVR 95 (319)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEET-CCEE
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEE-eeEE
Confidence 5799999999999999999999999999998421 0 111 11256677788888889999998 6788
Q ss_pred EEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700 229 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 264 (479)
Q Consensus 229 ~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~ 264 (479)
+++.. ++.. .+.+ ++.++.+|.+++|+|..|..
T Consensus 96 ~i~~~-~~~~-~v~~-~~~~~~~~~li~AtG~~~~~ 128 (319)
T 3cty_A 96 SIKKT-QGGF-DIET-NDDTYHAKYVIITTGTTHKH 128 (319)
T ss_dssp EEEEE-TTEE-EEEE-SSSEEEEEEEEECCCEEECC
T ss_pred EEEEe-CCEE-EEEE-CCCEEEeCEEEECCCCCccc
Confidence 88763 3322 3555 56789999999999987654
No 217
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=98.20 E-value=4.5e-06 Score=87.35 Aligned_cols=144 Identities=15% Similarity=0.156 Sum_probs=93.4
Q ss_pred EeecCCCccc-ccccCCCCCCCCCeEEecCHHHHHHHHHHHhcC--CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700 118 IIATGARALK-LEEFGLSGSDAENVCYLRDLADANRLVNVMKSC--SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 194 (479)
Q Consensus 118 viAtG~~~~~-~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~--~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~ 194 (479)
..++.++... +++ |..+..++..+....+...+...+... ..-.|+|||+|..|+..|..|++.|.+|+++++.
T Consensus 77 ~~c~~ch~~~~~~~---p~~~~~~~~~w~~~~~~~~i~~~i~~~~~~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~ 153 (566)
T 1qo8_A 77 FYCNECHSFDIKPM---PFSDAKKKKSWDDGWDQDKIQKAIAAGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKA 153 (566)
T ss_dssp CGGGGTCCCCCCCC---TTTTSCCCCCSCCCCCHHHHHHHHHTCCSEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred chhhhhcCCCcCCC---CCCCCCCCcccccccccHHHHHhhccCCCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 3455665544 333 333333333444433333332333311 1236999999999999999999999999999987
Q ss_pred Cccccc--------------------------------------------------------------------------
Q 011700 195 AHCMAR-------------------------------------------------------------------------- 200 (479)
Q Consensus 195 ~~~l~~-------------------------------------------------------------------------- 200 (479)
+.+...
T Consensus 154 ~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g 233 (566)
T 1qo8_A 154 PFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLGANLDDLKRSGG 233 (566)
T ss_dssp SSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTT
T ss_pred CCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHhccHHHHHHHHhcCCccccccccCC
Confidence 532100
Q ss_pred -----c--------CCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC--CCc--EEeccEEEEecCCCCC
Q 011700 201 -----L--------FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--DGN--RLPTDMVVVGIGIRPN 263 (479)
Q Consensus 201 -----~--------~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~--~g~--~i~~D~Vi~a~G~~p~ 263 (479)
. ....+.+.+.+.+++.||+++++++++++..++++++..+.+. +|+ ++.+|.||+|+|-...
T Consensus 234 ~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~ 313 (566)
T 1qo8_A 234 ARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM 313 (566)
T ss_dssp CSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred CCCCceeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCccc
Confidence 0 0123445566777888999999999999987432777666664 675 6899999999996554
Q ss_pred h
Q 011700 264 T 264 (479)
Q Consensus 264 ~ 264 (479)
.
T Consensus 314 ~ 314 (566)
T 1qo8_A 314 N 314 (566)
T ss_dssp C
T ss_pred C
Confidence 3
No 218
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=98.19 E-value=4.7e-06 Score=80.17 Aligned_cols=99 Identities=12% Similarity=0.187 Sum_probs=75.9
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc-----------cccc----cCCHHHHHHHHHHHHhCCcEEEcCCce
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH-----------CMAR----LFTPKIASYYEEYYKSKGVKFVKGTVL 227 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-----------~l~~----~~~~~~~~~~~~~l~~~GV~i~~~~~v 227 (479)
.+++|||+|+.|+.+|..|++.|.+|+++++... ..+. ...+++.+.+.+.+++.|++++.++ +
T Consensus 6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v 84 (320)
T 1trb_A 6 SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH-I 84 (320)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC-E
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEccCCCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEee-e
Confidence 5799999999999999999999999999986410 0111 1125677778888889999999986 8
Q ss_pred EEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700 228 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 228 ~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~ 265 (479)
..++.. ++.+ .+ +.+++++.+|.+++|+|.+|...
T Consensus 85 ~~i~~~-~~~~-~v-~~~~~~~~~~~lv~AtG~~~~~~ 119 (320)
T 1trb_A 85 NKVDLQ-NRPF-RL-NGDNGEYTCDALIIATGASARYL 119 (320)
T ss_dssp EEEECS-SSSE-EE-EESSCEEEEEEEEECCCEEECCC
T ss_pred eEEEec-CCEE-EE-EeCCCEEEcCEEEECCCCCcCCC
Confidence 888763 3332 34 56778999999999999877543
No 219
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.19 E-value=3.9e-06 Score=86.45 Aligned_cols=98 Identities=14% Similarity=0.097 Sum_probs=75.1
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||+.|+..|..|+++|.+ |+++++.+... +.+. ........+.+++
T Consensus 176 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~~l-------------------~~~d----~~~~~~l~~~l~~ 229 (500)
T 1onf_A 176 SKKIGIVGSGYIAVELINVIKRLGID---SYIFARGNRIL-------------------RKFD----ESVINVLENDMKK 229 (500)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCE---EEEECSSSSSC-------------------TTSC----HHHHHHHHHHHHH
T ss_pred CCeEEEECChHHHHHHHHHHHHcCCe---EEEEecCCccC-------------------cccc----hhhHHHHHHHHHh
Confidence 36899999999999999999998876 99999875310 0000 0111334567788
Q ss_pred cCcEEEeCceEEEEECCC---cEEEeCCCcE-EEeceEEeecCCCccc
Q 011700 84 HGIELVLGTRVKSADVRR---KTLVTATGET-ISYKILIIATGARALK 127 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~---~~v~~~~g~~-~~~d~lviAtG~~~~~ 127 (479)
.||+++.++.+.+++.+. ..+.+.+|++ +.+|.||+|+|.+|..
T Consensus 230 ~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~ 277 (500)
T 1onf_A 230 NNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDT 277 (500)
T ss_dssp TTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTT
T ss_pred CCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCC
Confidence 999999999999997642 3577778887 9999999999999875
No 220
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Probab=98.19 E-value=2.9e-06 Score=90.02 Aligned_cols=35 Identities=29% Similarity=0.450 Sum_probs=32.3
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
++||||||||.||++||++|++.|.+ |+|||+.+.
T Consensus 5 ~~DVvVIGgG~AGL~AAl~aae~G~~---V~vlEK~~~ 39 (660)
T 2bs2_A 5 YCDSLVIGGGLAGLRAAVATQQKGLS---TIVLSLIPV 39 (660)
T ss_dssp ECSEEEECCSHHHHHHHHHHHTTTCC---EEEECSSCG
T ss_pred cccEEEECchHHHHHHHHHHHHCCCc---EEEEeccCC
Confidence 58999999999999999999999987 999999864
No 221
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=98.18 E-value=3.2e-06 Score=86.60 Aligned_cols=98 Identities=14% Similarity=0.116 Sum_probs=74.8
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||+.|+..|..|++.|.+ |+++++.+... +.+. ......+.+.+++
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~~l-------------------~~~d----~~~~~~l~~~l~~ 238 (479)
T 2hqm_A 185 PKKVVVVGAGYIGIELAGVFHGLGSE---THLVIRGETVL-------------------RKFD----ECIQNTITDHYVK 238 (479)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHTTCE---EEEECSSSSSC-------------------TTSC----HHHHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---eEEEEeCCccc-------------------cccC----HHHHHHHHHHHHh
Confidence 36899999999999999999998876 99999885310 0000 0111234566778
Q ss_pred cCcEEEeCceEEEEECCC----cEEEeCCC-cEEEeceEEeecCCCccc
Q 011700 84 HGIELVLGTRVKSADVRR----KTLVTATG-ETISYKILIIATGARALK 127 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~----~~v~~~~g-~~~~~d~lviAtG~~~~~ 127 (479)
.||+++.+++|.+++.+. ..+.+.+| +++.+|.||+|+|.+|..
T Consensus 239 ~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~ 287 (479)
T 2hqm_A 239 EGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHL 287 (479)
T ss_dssp HTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECC
T ss_pred CCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCcc
Confidence 899999999999997642 35777788 789999999999988865
No 222
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=98.18 E-value=3.1e-06 Score=88.99 Aligned_cols=98 Identities=17% Similarity=0.301 Sum_probs=77.1
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... +.+. ......+.+.+++
T Consensus 187 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l-------------------~~~~----~~~~~~l~~~l~~ 240 (588)
T 3ics_A 187 PRHATVIGGGFIGVEMVENLRERGIE---VTLVEMANQVM-------------------PPID----YEMAAYVHEHMKN 240 (588)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSC-------------------TTSC----HHHHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCccc-------------------ccCC----HHHHHHHHHHHHH
Confidence 46899999999999999999998876 99998875310 0000 0111334566788
Q ss_pred cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCccc
Q 011700 84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALK 127 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~ 127 (479)
.|++++.++.|.+++.+...+.+.+|+++.+|.||+|+|.+|..
T Consensus 241 ~GV~i~~~~~v~~i~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~ 284 (588)
T 3ics_A 241 HDVELVFEDGVDALEENGAVVRLKSGSVIQTDMLILAIGVQPES 284 (588)
T ss_dssp TTCEEECSCCEEEEEGGGTEEEETTSCEEECSEEEECSCEEECC
T ss_pred cCCEEEECCeEEEEecCCCEEEECCCCEEEcCEEEEccCCCCCh
Confidence 99999999999999887678888899999999999999988764
No 223
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=98.18 E-value=8.3e-06 Score=81.28 Aligned_cols=101 Identities=17% Similarity=0.245 Sum_probs=74.8
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc-----cCCHHHHHH---------------------------
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----LFTPKIASY--------------------------- 209 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----~~~~~~~~~--------------------------- 209 (479)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+..... .+.+...+.
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~ 84 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE 84 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCCCC
Confidence 468999999999999999999999999999987653111 012222111
Q ss_pred ----------------HHHHHHh--CCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700 210 ----------------YEEYYKS--KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 264 (479)
Q Consensus 210 ----------------~~~~l~~--~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~ 264 (479)
+.+.|.+ .|++++.++++++++.++++ + .+.+.+|+++.+|.||.|.|.....
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v-~v~~~~g~~~~ad~vV~AdG~~S~v 155 (397)
T 2vou_A 85 RVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSET-V-QMRFSDGTKAEANWVIGADGGASVV 155 (397)
T ss_dssp EEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSC-E-EEEETTSCEEEESEEEECCCTTCHH
T ss_pred ccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCE-E-EEEECCCCEEECCEEEECCCcchhH
Confidence 1222222 37899999999999874443 3 5788899999999999999987654
No 224
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*
Probab=98.17 E-value=5.4e-06 Score=86.98 Aligned_cols=35 Identities=29% Similarity=0.377 Sum_probs=32.1
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
++||||||||+||++||++|++.|.+ |+|+|+.+.
T Consensus 7 ~~DVvVVGaG~AGl~AA~~la~~G~~---V~vlEK~~~ 41 (588)
T 2wdq_A 7 EFDAVVIGAGGAGMRAALQISQSGQT---CALLSKVFP 41 (588)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCG
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCc---EEEEecCCC
Confidence 47999999999999999999999887 999999854
No 225
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
Probab=98.16 E-value=3.7e-06 Score=87.63 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=32.4
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
++||+||||||+|+++|..|+++|.+ |+|||+.+.
T Consensus 26 ~~dVlIVGaGpaGl~~A~~La~~G~~---V~vlEr~~~ 60 (549)
T 2r0c_A 26 ETDVLILGGGPVGMALALDLAHRQVG---HLVVEQTDG 60 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSCS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCC---EEEEeCCCC
Confidence 47999999999999999999999987 999999865
No 226
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=98.16 E-value=4.7e-06 Score=80.99 Aligned_cols=100 Identities=14% Similarity=0.156 Sum_probs=76.7
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecC---cc--------ccc----cCCHHHHHHHHHHHHhCCcEEEcCCc
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEA---HC--------MAR----LFTPKIASYYEEYYKSKGVKFVKGTV 226 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~---~~--------l~~----~~~~~~~~~~~~~l~~~GV~i~~~~~ 226 (479)
..+++|||+|+.|+.+|..|.+.|.+|+++++.. .+ .+. ...+++.+.+.+.+++.|++++.++
T Consensus 14 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~- 92 (335)
T 2a87_A 14 VRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRMED- 92 (335)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSSCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEECCC-
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEEEee-
Confidence 3579999999999999999999999999998531 00 111 0125677778888888999999987
Q ss_pred eEEEEEcCCCcEEEE-EeCCCcEEeccEEEEecCCCCChh
Q 011700 227 LSSFDVDSNGKVVAV-NLRDGNRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 227 v~~i~~~~~g~v~~v-~~~~g~~i~~D~Vi~a~G~~p~~~ 265 (479)
+.+++. ++. ..+ .+.+++++.+|.+++|+|.+|...
T Consensus 93 v~~i~~-~~~--~~v~~~~~g~~~~~d~lviAtG~~~~~~ 129 (335)
T 2a87_A 93 VESVSL-HGP--LKSVVTADGQTHRARAVILAMGAAARYL 129 (335)
T ss_dssp EEEEEC-SSS--SEEEEETTSCEEEEEEEEECCCEEECCC
T ss_pred EEEEEe-CCc--EEEEEeCCCCEEEeCEEEECCCCCccCC
Confidence 888875 222 235 677888999999999999877543
No 227
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=98.16 E-value=1.2e-05 Score=84.22 Aligned_cols=105 Identities=16% Similarity=0.157 Sum_probs=79.6
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc--------------------------------------cC--
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------------------------------------LF-- 202 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------------~~-- 202 (479)
..|+|||+|..|+.+|..|++.|.+|+++++.+.+... ..
T Consensus 127 ~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~~ 206 (571)
T 1y0p_A 127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDP 206 (571)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCH
Confidence 57999999999999999999999999999986532110 00
Q ss_pred -----------------------------------------------CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCC
Q 011700 203 -----------------------------------------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSN 235 (479)
Q Consensus 203 -----------------------------------------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~ 235 (479)
...+.+.+.+.+++.||+++++++++++..+++
T Consensus 207 ~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~ 286 (571)
T 1y0p_A 207 ALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDK 286 (571)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTT
T ss_pred HHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCC
Confidence 123455666777888999999999999987443
Q ss_pred CcEEEEEeC--CCc--EEeccEEEEecCCCC-Chhhh
Q 011700 236 GKVVAVNLR--DGN--RLPTDMVVVGIGIRP-NTSLF 267 (479)
Q Consensus 236 g~v~~v~~~--~g~--~i~~D~Vi~a~G~~p-~~~l~ 267 (479)
+++..+... +|+ ++.+|.||+|+|... +.+++
T Consensus 287 g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~~n~~~~ 323 (571)
T 1y0p_A 287 GTVKGILVKGMYKGYYWVKADAVILATGGFAKNNERV 323 (571)
T ss_dssp SCEEEEEEEETTTEEEEEECSEEEECCCCCTTCHHHH
T ss_pred CeEEEEEEEeCCCcEEEEECCeEEEeCCCcccCHHHH
Confidence 777666654 665 689999999999654 44443
No 228
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=98.16 E-value=3.7e-06 Score=86.85 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=35.7
Q ss_pred HHHcCcEEEeCceEEEEECC--C--cEEEeCCCcEEEeceEEeecCCCccc
Q 011700 81 YNEHGIELVLGTRVKSADVR--R--KTLVTATGETISYKILIIATGARALK 127 (479)
Q Consensus 81 ~~~~gv~~~~~~~v~~i~~~--~--~~v~~~~g~~~~~d~lviAtG~~~~~ 127 (479)
+.+.|++++.+ +|+++..+ + ..|.+.+|+++++|.||.|+|.....
T Consensus 183 a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~ 232 (511)
T 2weu_A 183 AIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGLL 232 (511)
T ss_dssp HHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCCC
T ss_pred HHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchHH
Confidence 34579999999 89998763 2 24566778889999999999986543
No 229
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=98.15 E-value=3.6e-06 Score=86.17 Aligned_cols=99 Identities=21% Similarity=0.393 Sum_probs=73.3
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... +.+. ......+.+.+++
T Consensus 183 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l-------------------~~~~----~~~~~~l~~~l~~ 236 (478)
T 1v59_A 183 PKRLTIIGGGIIGLEMGSVYSRLGSK---VTVVEFQPQIG-------------------ASMD----GEVAKATQKFLKK 236 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS-------------------SSSC----HHHHHHHHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCE---EEEEEeCCccc-------------------cccC----HHHHHHHHHHHHH
Confidence 36899999999999999999998876 99999885310 0000 0111334566788
Q ss_pred cCcEEEeCceEEEEEC--CCc--EEEeC-----CCcEEEeceEEeecCCCcccc
Q 011700 84 HGIELVLGTRVKSADV--RRK--TLVTA-----TGETISYKILIIATGARALKL 128 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~--~~~--~v~~~-----~g~~~~~d~lviAtG~~~~~~ 128 (479)
.||+++.++.+.+++. +++ .+.+. +++++.+|.||+|+|.+|...
T Consensus 237 ~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~ 290 (478)
T 1v59_A 237 QGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIA 290 (478)
T ss_dssp TTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCT
T ss_pred CCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCC
Confidence 9999999999999986 443 34443 346799999999999988653
No 230
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=98.15 E-value=1.9e-05 Score=76.41 Aligned_cols=97 Identities=11% Similarity=0.079 Sum_probs=70.8
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc-------------------cCCHHHHHHHHH-----------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-------------------LFTPKIASYYEE----------- 212 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-------------------~~~~~~~~~~~~----------- 212 (479)
.+|+|||+|++|+.+|..|++.|.+|+++++.+.+-.+ ..++.+.+.+.+
T Consensus 3 ~dV~IIGaG~~Gl~~A~~L~~~G~~V~vlE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T 1yvv_A 3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSDAGALDMGAQYFTARDRRFATAVKQWQAQGHVAEWT 82 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEEETTEEEECSCCCBCCCSHHHHHHHHHHHHHTSEEEEC
T ss_pred ceEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCcccceeEecCCCeEecCCCeEecCCHHHHHHHHHHHhCCCeeecc
Confidence 57999999999999999999999999999987532100 012333333222
Q ss_pred --------------------------------HHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEe-ccEEEEecC
Q 011700 213 --------------------------------YYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLP-TDMVVVGIG 259 (479)
Q Consensus 213 --------------------------------~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~-~D~Vi~a~G 259 (479)
.+. .|++++++++|++++.++++ ..+.+.+|+.+. +|.||+|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~g~~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~~a~~vV~a~g 159 (336)
T 1yvv_A 83 PLLYNFHAGRLSPSPDEQVRWVGKPGMSAITRAMR-GDMPVSFSCRITEVFRGEEH--WNLLDAEGQNHGPFSHVIIATP 159 (336)
T ss_dssp CCEEEESSSBCCCCCTTSCEEEESSCTHHHHHHHH-TTCCEECSCCEEEEEECSSC--EEEEETTSCEEEEESEEEECSC
T ss_pred ccceeccCcccccCCCCCccEEcCccHHHHHHHHH-ccCcEEecCEEEEEEEeCCE--EEEEeCCCcCccccCEEEEcCC
Confidence 222 28899999999999985444 347788887764 999999998
Q ss_pred CCC
Q 011700 260 IRP 262 (479)
Q Consensus 260 ~~p 262 (479)
...
T Consensus 160 ~~~ 162 (336)
T 1yvv_A 160 APQ 162 (336)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 231
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=98.14 E-value=7.1e-06 Score=78.57 Aligned_cols=99 Identities=13% Similarity=0.119 Sum_probs=74.4
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEE-EeecCcc------------ccc----cCCHHHHHHHHHHHHhCCcEEEcC
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTM-VFPEAHC------------MAR----LFTPKIASYYEEYYKSKGVKFVKG 224 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtl-v~~~~~~------------l~~----~~~~~~~~~~~~~l~~~GV~i~~~ 224 (479)
..+++|||+|+.|+.+|..|++.|.+|++ +++. .+ .+. ....++.+.+.+.+++.|++++.+
T Consensus 4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~-~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 82 (315)
T 3r9u_A 4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKG-MPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMV 82 (315)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSS-STTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEECC
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCC-CCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEEEE
Confidence 46899999999999999999999999999 8873 21 111 012577888888999999999988
Q ss_pred CceEEEEEcCC-CcEEEE-EeCCCcEEeccEEEEecCCCCChh
Q 011700 225 TVLSSFDVDSN-GKVVAV-NLRDGNRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 225 ~~v~~i~~~~~-g~v~~v-~~~~g~~i~~D~Vi~a~G~~p~~~ 265 (479)
++.++ .+++ +.. .+ ...++ ++.+|.+++|+|.+|+..
T Consensus 83 -~v~~i-~~~~~~~~-~v~~~~~~-~~~~d~lvlAtG~~~~~~ 121 (315)
T 3r9u_A 83 -GVEQI-LKNSDGSF-TIKLEGGK-TELAKAVIVCTGSAPKKA 121 (315)
T ss_dssp -CEEEE-EECTTSCE-EEEETTSC-EEEEEEEEECCCEEECCC
T ss_pred -EEEEE-ecCCCCcE-EEEEecCC-EEEeCEEEEeeCCCCCCC
Confidence 78888 5331 322 33 22344 899999999999877654
No 232
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=98.14 E-value=4.4e-06 Score=85.85 Aligned_cols=98 Identities=17% Similarity=0.232 Sum_probs=75.3
Q ss_pred cCeEEEECCchHHHHHHHHHHHc---CCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKR---GVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKW 80 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~---g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (479)
..+++|||||+.|+..|..|++. |.+ |+++++.+... +.+. ......+.+.
T Consensus 191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~---Vtlv~~~~~~l-------------------~~~d----~~~~~~l~~~ 244 (495)
T 2wpf_A 191 PRRVLTVGGGFISVEFAGIFNAYKPPGGK---VTLCYRNNLIL-------------------RGFD----ETIREEVTKQ 244 (495)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHCCTTCE---EEEEESSSSSC-------------------TTSC----HHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCCCCe---EEEEEcCCccc-------------------cccC----HHHHHHHHHH
Confidence 36899999999999999999998 765 99999875310 0000 0111334566
Q ss_pred HHHcCcEEEeCceEEEEECCC---cEEEeCCCcEEEeceEEeecCCCccc
Q 011700 81 YNEHGIELVLGTRVKSADVRR---KTLVTATGETISYKILIIATGARALK 127 (479)
Q Consensus 81 ~~~~gv~~~~~~~v~~i~~~~---~~v~~~~g~~~~~d~lviAtG~~~~~ 127 (479)
+++.||+++.++.|.+++.++ ..+.+.+|+++.+|.||+|+|.+|..
T Consensus 245 l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~ 294 (495)
T 2wpf_A 245 LTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRT 294 (495)
T ss_dssp HHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEECC
T ss_pred HHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCcccc
Confidence 788999999999999998653 36777888899999999999998865
No 233
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=98.14 E-value=4.6e-06 Score=85.66 Aligned_cols=98 Identities=15% Similarity=0.182 Sum_probs=75.1
Q ss_pred cCeEEEECCchHHHHHHHHHHHc---CCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKR---GVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKW 80 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~---g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (479)
..+++|||||+.|+.+|..|++. |.+ |+++++.+... +.+. ......+.+.
T Consensus 187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~---Vtlv~~~~~~l-------------------~~~d----~~~~~~l~~~ 240 (490)
T 1fec_A 187 PKRALCVGGGYISIEFAGIFNAYKARGGQ---VDLAYRGDMIL-------------------RGFD----SELRKQLTEQ 240 (490)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTCE---EEEEESSSSSS-------------------TTSC----HHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhhccCcCe---EEEEEcCCCcc-------------------cccC----HHHHHHHHHH
Confidence 36899999999999999999998 765 99999885310 0000 0111334566
Q ss_pred HHHcCcEEEeCceEEEEECCC---cEEEeCCCcEEEeceEEeecCCCccc
Q 011700 81 YNEHGIELVLGTRVKSADVRR---KTLVTATGETISYKILIIATGARALK 127 (479)
Q Consensus 81 ~~~~gv~~~~~~~v~~i~~~~---~~v~~~~g~~~~~d~lviAtG~~~~~ 127 (479)
+++.||+++.++.|.+++.++ ..+.+.+|+++.+|.||+|+|.+|..
T Consensus 241 l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~ 290 (490)
T 1fec_A 241 LRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRS 290 (490)
T ss_dssp HHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESC
T ss_pred HHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCc
Confidence 788999999999999998653 36777788889999999999998865
No 234
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=98.13 E-value=5.9e-06 Score=84.86 Aligned_cols=99 Identities=23% Similarity=0.304 Sum_probs=73.8
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... .. .++ ........+.+++
T Consensus 194 ~~~vvVIGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~~l------~~---------~~~-------~~~~~~l~~~l~~ 248 (490)
T 2bc0_A 194 IKRVAVVGAGYIGVELAEAFQRKGKE---VVLIDVVDTCL------AG---------YYD-------RDLTDLMAKNMEE 248 (490)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSTT------TT---------TSC-------HHHHHHHHHHHHT
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCe---EEEEEcccchh------hh---------HHH-------HHHHHHHHHHHHh
Confidence 46899999999999999999998876 99999885310 00 000 0111234566778
Q ss_pred cCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCcccc
Q 011700 84 HGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALKL 128 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~~ 128 (479)
.||+++.++.+.+++.+++ .+.+ +++++.+|.||+|+|.+|..+
T Consensus 249 ~GV~i~~~~~v~~i~~~~~v~~v~~-~g~~i~~D~Vi~a~G~~p~~~ 294 (490)
T 2bc0_A 249 HGIQLAFGETVKEVAGNGKVEKIIT-DKNEYDVDMVILAVGFRPNTT 294 (490)
T ss_dssp TTCEEEETCCEEEEECSSSCCEEEE-SSCEEECSEEEECCCEEECCG
T ss_pred CCeEEEeCCEEEEEEcCCcEEEEEE-CCcEEECCEEEECCCCCcChH
Confidence 9999999999999987543 3555 677899999999999988653
No 235
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=98.13 E-value=4.8e-06 Score=85.15 Aligned_cols=99 Identities=15% Similarity=0.243 Sum_probs=72.9
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... + . .++ ........+.+++
T Consensus 178 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l---~---~---------~~~-------~~~~~~l~~~l~~ 232 (474)
T 1zmd_A 178 PEKMVVIGAGVIGVELGSVWQRLGAD---VTAVEFLGHVG---G---V---------GID-------MEISKNFQRILQK 232 (474)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS---C---S---------SCC-------HHHHHHHHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCE---EEEEeccCccC---C---c---------ccC-------HHHHHHHHHHHHH
Confidence 36899999999999999999998876 99999885310 0 0 000 0111234566788
Q ss_pred cCcEEEeCceEEEEECCCc---EEEe-----CCCcEEEeceEEeecCCCccc
Q 011700 84 HGIELVLGTRVKSADVRRK---TLVT-----ATGETISYKILIIATGARALK 127 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~---~v~~-----~~g~~~~~d~lviAtG~~~~~ 127 (479)
.||+++.++.|.+++.++. .+.+ .+++++.+|.||+|+|.+|..
T Consensus 233 ~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~ 284 (474)
T 1zmd_A 233 QGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFT 284 (474)
T ss_dssp TTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECC
T ss_pred CCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCC
Confidence 9999999999999986542 3332 355789999999999998865
No 236
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=98.12 E-value=4.4e-06 Score=84.88 Aligned_cols=101 Identities=15% Similarity=0.249 Sum_probs=73.1
Q ss_pred CCEEEECCChHHHHHHHHHhhC--CCeEEEEeecCccc--cc----cCCH------HHHHHHHHHHHhCCcEEEcCCceE
Q 011700 163 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCM--AR----LFTP------KIASYYEEYYKSKGVKFVKGTVLS 228 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~l--~~----~~~~------~~~~~~~~~l~~~GV~i~~~~~v~ 228 (479)
++++|||+|+.|+.+|..|++. +.+|+++++++.+- +. .+.. ++.....+.+++.|++++.++++.
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~ 82 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVV 82 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence 5799999999999999999998 89999999887532 10 0111 111113466788999999999999
Q ss_pred EEEEcCCCcEEEEE-eCCCcEEeccEEEEecCCCCChh
Q 011700 229 SFDVDSNGKVVAVN-LRDGNRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 229 ~i~~~~~g~v~~v~-~~~g~~i~~D~Vi~a~G~~p~~~ 265 (479)
+++. ++.. ..+. ..+++++.+|.+++|+|.+|...
T Consensus 83 ~id~-~~~~-v~v~~~~~~~~~~~d~lviAtG~~p~~p 118 (452)
T 3oc4_A 83 AMDV-ENQL-IAWTRKEEQQWYSYDKLILATGASQFST 118 (452)
T ss_dssp EEET-TTTE-EEEEETTEEEEEECSEEEECCCCCBCCC
T ss_pred EEEC-CCCE-EEEEecCceEEEEcCEEEECCCcccCCC
Confidence 9986 2332 2333 23456899999999999988754
No 237
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=98.12 E-value=1.9e-05 Score=82.54 Aligned_cols=100 Identities=15% Similarity=0.154 Sum_probs=77.5
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc-cc-----------------------cc------------------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH-CM-----------------------AR------------------ 200 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-~l-----------------------~~------------------ 200 (479)
-.|+|||+|..|+++|..+++.|.+|+++++.+. +. ..
T Consensus 29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l~~ 108 (651)
T 3ces_A 29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNA 108 (651)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEEST
T ss_pred CCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhhhc
Confidence 3699999999999999999999999999997631 10 00
Q ss_pred -----------cCC-HHHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700 201 -----------LFT-PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 264 (479)
Q Consensus 201 -----------~~~-~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~ 264 (479)
..+ ..+.+.+.+.+++ .|++++ +..++.+.. +++.+..|.+.+|.++.+|.||+|+|..+..
T Consensus 109 ~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~-e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~~ 183 (651)
T 3ces_A 109 SKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIV-ENDRVVGAVTQMGLKFRAKAVVLTVGTFLDG 183 (651)
T ss_dssp TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEE-SSSBEEEEEETTSEEEEEEEEEECCSTTTCC
T ss_pred ccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEe-cCCEEEEEEECCCCEEECCEEEEcCCCCccC
Confidence 011 1345666777777 699995 568999986 4667778888899899999999999987653
No 238
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=98.12 E-value=5e-06 Score=86.08 Aligned_cols=97 Identities=18% Similarity=0.233 Sum_probs=74.2
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH 84 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (479)
.+++|||||+.|+..|..|++.|.+ |+++++.+... +.+. ......+.+.+++.
T Consensus 215 ~~vvViGgG~~g~E~A~~l~~~G~~---Vtlv~~~~~~l-------------------~~~~----~~~~~~l~~~l~~~ 268 (523)
T 1mo9_A 215 STVVVVGGSKTAVEYGCFFNATGRR---TVMLVRTEPLK-------------------LIKD----NETRAYVLDRMKEQ 268 (523)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCTTT-------------------TCCS----HHHHHHHHHHHHHT
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCe---EEEEEecCccc-------------------cccc----HHHHHHHHHHHHhC
Confidence 6899999999999999999998876 99999885310 0000 01113345667889
Q ss_pred CcEEEeCceEEEEEC--CC----cEEEeCCCc-EEEeceEEeecCCCccc
Q 011700 85 GIELVLGTRVKSADV--RR----KTLVTATGE-TISYKILIIATGARALK 127 (479)
Q Consensus 85 gv~~~~~~~v~~i~~--~~----~~v~~~~g~-~~~~d~lviAtG~~~~~ 127 (479)
|++++.+++|.+++. +. ..+.+.+|+ ++.+|.||+|+|.+|..
T Consensus 269 GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~ 318 (523)
T 1mo9_A 269 GMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRS 318 (523)
T ss_dssp TCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECC
T ss_pred CcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCC
Confidence 999999999999986 33 246667777 89999999999999875
No 239
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=98.12 E-value=1e-05 Score=77.56 Aligned_cols=99 Identities=14% Similarity=0.189 Sum_probs=74.6
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeecCc----c---c---------cc----cCCHHHHHHHHHHHHhCCcEEEc
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH----C---M---------AR----LFTPKIASYYEEYYKSKGVKFVK 223 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~----~---l---------~~----~~~~~~~~~~~~~l~~~GV~i~~ 223 (479)
.++|||+|+.|+.+|..++++|.+|+++++.+. + + +. ...+++.+.+.+.+++.++++..
T Consensus 6 DvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~~~~ 85 (314)
T 4a5l_A 6 DVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTTIIT 85 (314)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEEC
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcEEEE
Confidence 599999999999999999999999999987531 0 0 00 01256778888888999999886
Q ss_pred CCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700 224 GTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 224 ~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~ 265 (479)
.. +.......+ ...+.+.++.++.+|.+++|||.+|...
T Consensus 86 ~~-v~~~~~~~~--~~~~~~~~~~~~~~~~liiATG~~~~~~ 124 (314)
T 4a5l_A 86 ET-IDHVDFSTQ--PFKLFTEEGKEVLTKSVIIATGATAKRM 124 (314)
T ss_dssp CC-EEEEECSSS--SEEEEETTCCEEEEEEEEECCCEEECCC
T ss_pred eE-EEEeecCCC--ceEEEECCCeEEEEeEEEEccccccccc
Confidence 65 555554222 2346678888999999999999877543
No 240
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=98.12 E-value=4.6e-06 Score=85.02 Aligned_cols=98 Identities=20% Similarity=0.270 Sum_probs=72.8
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||+.|+.+|..|++.|.+ |+++++.+.. + |.+. ........+.+++
T Consensus 171 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~-----------l--------~~~~----~~~~~~l~~~l~~ 224 (464)
T 2a8x_A 171 PKSIIIAGAGAIGMEFGYVLKNYGVD---VTIVEFLPRA-----------L--------PNED----ADVSKEIEKQFKK 224 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSS-----------S--------TTSC----HHHHHHHHHHHHH
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEEcCCcc-----------c--------cccC----HHHHHHHHHHHHH
Confidence 46899999999999999999998876 9999988531 0 0000 0111234566778
Q ss_pred cCcEEEeCceEEEEECCCc--EEEeC-CC--cEEEeceEEeecCCCccc
Q 011700 84 HGIELVLGTRVKSADVRRK--TLVTA-TG--ETISYKILIIATGARALK 127 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~--~v~~~-~g--~~~~~d~lviAtG~~~~~ 127 (479)
.||+++.++.+.+++.++. .+.+. +| +++.+|.+|+|+|.+|..
T Consensus 225 ~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~ 273 (464)
T 2a8x_A 225 LGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNV 273 (464)
T ss_dssp HTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEECC
T ss_pred cCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCccC
Confidence 8999999999999986543 34443 55 679999999999998864
No 241
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=98.12 E-value=2.9e-06 Score=86.98 Aligned_cols=98 Identities=12% Similarity=0.130 Sum_probs=73.7
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... +.+. ........+.+++
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~G~~---Vtlv~~~~~~l-------------------~~~~----~~~~~~l~~~l~~ 238 (482)
T 1ojt_A 185 PGKLLIIGGGIIGLEMGTVYSTLGSR---LDVVEMMDGLM-------------------QGAD----RDLVKVWQKQNEY 238 (482)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTCE---EEEECSSSSSS-------------------TTSC----HHHHHHHHHHHGG
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEECCccc-------------------cccC----HHHHHHHHHHHHh
Confidence 46899999999999999999998876 99999885310 0000 0111234566778
Q ss_pred cCcEEEeCceEEEEECCCc--EEEeCC----CcEEEeceEEeecCCCccc
Q 011700 84 HGIELVLGTRVKSADVRRK--TLVTAT----GETISYKILIIATGARALK 127 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~--~v~~~~----g~~~~~d~lviAtG~~~~~ 127 (479)
.||+++.++.+.+++.++. .+.+.+ ++++.+|.||+|+|.+|..
T Consensus 239 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~ 288 (482)
T 1ojt_A 239 RFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNG 288 (482)
T ss_dssp GEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEECG
T ss_pred cCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcCC
Confidence 8999999999999976543 455555 6779999999999998865
No 242
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=98.11 E-value=6.9e-06 Score=84.54 Aligned_cols=98 Identities=18% Similarity=0.291 Sum_probs=74.7
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||+|+.|+..|..+++.|.+ |+++++.+... +.+. ......+.+.+++
T Consensus 182 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~~l-------------------~~~d----~~~~~~l~~~l~~ 235 (499)
T 1xdi_A 182 PDHLIVVGSGVTGAEFVDAYTELGVP---VTVVASQDHVL-------------------PYED----ADAALVLEESFAE 235 (499)
T ss_dssp CSSEEEESCSHHHHHHHHHHHHTTCC---EEEECSSSSSS-------------------CCSS----HHHHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCccc-------------------cccC----HHHHHHHHHHHHH
Confidence 36899999999999999999998876 99999885310 0000 0111334566788
Q ss_pred cCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCccc
Q 011700 84 HGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALK 127 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~ 127 (479)
.|++++.++.|.+++.++. .+.+.+++++.+|.||+|+|.+|..
T Consensus 236 ~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~ 281 (499)
T 1xdi_A 236 RGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNT 281 (499)
T ss_dssp TTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECC
T ss_pred CCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCC
Confidence 9999999999999986543 4555677889999999999998865
No 243
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=98.10 E-value=5.1e-06 Score=84.57 Aligned_cols=102 Identities=16% Similarity=0.136 Sum_probs=76.2
Q ss_pred CEEEECCChHHHHHHHHHhhCC-----CeEEEEeecCccc-------c--------------------------------
Q 011700 164 NAVVIGGGYIGMECAASLVINK-----INVTMVFPEAHCM-------A-------------------------------- 199 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g-----~~Vtlv~~~~~~l-------~-------------------------------- 199 (479)
+|+|||+|+.|+.+|..|++.| .+|+++++.+.+- +
T Consensus 32 dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~~~~ 111 (463)
T 3s5w_A 32 DLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLHKHD 111 (463)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHHHTT
T ss_pred CEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhhhcC
Confidence 7999999999999999999999 9999999876321 0
Q ss_pred ---------cc--CCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcC-CCcE--EEEEeCCCc----EEeccEEEEecCCC
Q 011700 200 ---------RL--FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDS-NGKV--VAVNLRDGN----RLPTDMVVVGIGIR 261 (479)
Q Consensus 200 ---------~~--~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~-~g~v--~~v~~~~g~----~i~~D~Vi~a~G~~ 261 (479)
.. ...++.+.+....++.+++++++++|++++..+ ++.. ..|.+.+++ ++.+|.||+|+|..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~~ 191 (463)
T 3s5w_A 112 RLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGGT 191 (463)
T ss_dssp CHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCCE
T ss_pred ceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCCC
Confidence 00 013445556666667789999999999998632 1332 256666665 89999999999987
Q ss_pred CChh
Q 011700 262 PNTS 265 (479)
Q Consensus 262 p~~~ 265 (479)
|..+
T Consensus 192 p~~p 195 (463)
T 3s5w_A 192 PRIP 195 (463)
T ss_dssp ECCC
T ss_pred CCCc
Confidence 7644
No 244
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=98.10 E-value=6.3e-06 Score=83.62 Aligned_cols=100 Identities=22% Similarity=0.308 Sum_probs=70.4
Q ss_pred CCCEEEECCChHHHHHHHHHhhC--CCeEEEEeecCccc------cccC-----CHHHHHHHHHHH-HhCCcEEEcCCce
Q 011700 162 GGNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCM------ARLF-----TPKIASYYEEYY-KSKGVKFVKGTVL 227 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~l------~~~~-----~~~~~~~~~~~l-~~~GV~i~~~~~v 227 (479)
.++++|||+|+.|+.+|..|++. +.+|+++++.+.+. +..+ ..++.....+.+ ++.||+++.++++
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~v 82 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEV 82 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHHTTCEEETTCEE
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCEE
Confidence 46899999999999999999987 78999999887431 1100 111122222333 6789999999999
Q ss_pred EEEEEcCCCcEEEEEeCCC-cEEeccEEEEecCCCCChh
Q 011700 228 SSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 228 ~~i~~~~~g~v~~v~~~~g-~~i~~D~Vi~a~G~~p~~~ 265 (479)
..++. +. ..+.+.++ .++.+|.+++|||.+|...
T Consensus 83 ~~i~~--~~--~~v~~~~g~~~~~~d~lviAtG~~p~~p 117 (449)
T 3kd9_A 83 IEVDT--GY--VRVRENGGEKSYEWDYLVFANGASPQVP 117 (449)
T ss_dssp EEECS--SE--EEEECSSSEEEEECSEEEECCCEEECCC
T ss_pred EEEec--CC--CEEEECCceEEEEcCEEEECCCCCCCCC
Confidence 98854 22 34666676 4899999999999887643
No 245
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=98.10 E-value=1.2e-05 Score=79.91 Aligned_cols=101 Identities=18% Similarity=0.178 Sum_probs=76.8
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc------ccc------------------------------------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC------MAR------------------------------------ 200 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~------l~~------------------------------------ 200 (479)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.. ...
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 82 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ 82 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECCc
Confidence 37999999999999999999999999999987531 000
Q ss_pred ----------------cCC-HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe-CCCc--EEeccEEEEecCC
Q 011700 201 ----------------LFT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-RDGN--RLPTDMVVVGIGI 260 (479)
Q Consensus 201 ----------------~~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~-~~g~--~i~~D~Vi~a~G~ 260 (479)
.++ .++.+.+.+.+.+.|++++.++++++++.++++.+ .+.+ .+|+ ++.+|.||.|.|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~-~v~~~~~g~~~~~~a~~vV~AdG~ 161 (394)
T 1k0i_A 83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERP-YVTFERDGERLRLDCDYIAGCDGF 161 (394)
T ss_dssp EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSC-EEEEEETTEEEEEECSEEEECCCT
T ss_pred eEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCce-EEEEecCCcEEEEEeCEEEECCCC
Confidence 001 33455666677778999999999999986333333 4666 6786 7999999999998
Q ss_pred CCCh
Q 011700 261 RPNT 264 (479)
Q Consensus 261 ~p~~ 264 (479)
....
T Consensus 162 ~S~v 165 (394)
T 1k0i_A 162 HGIS 165 (394)
T ss_dssp TCST
T ss_pred CcHH
Confidence 7765
No 246
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=98.10 E-value=6.5e-06 Score=79.12 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=31.7
Q ss_pred cCeEEEECCchHHHHHHHHHHHc--CCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKR--GVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~--g~~~~~V~lie~~~~ 41 (479)
++||+|||||++|+++|..|++. |++ |+|+|+.+.
T Consensus 65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~---V~v~e~~~~ 101 (326)
T 2gjc_A 65 VSDVIIVGAGSSGLSAAYVIAKNRPDLK---VCIIESSVA 101 (326)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSC---EEEECSSSS
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCe---EEEEecCcc
Confidence 46999999999999999999998 776 999999865
No 247
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=98.09 E-value=5.8e-06 Score=85.60 Aligned_cols=98 Identities=13% Similarity=0.080 Sum_probs=74.7
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
+.+++|||||+.|+..|..++++|.+ |+++++.... |.+. .+......+.+++
T Consensus 223 P~~lvIIGgG~IGlE~A~~~~~lG~~---VTii~~~~~L--------------------~~~D----~ei~~~l~~~l~~ 275 (542)
T 4b1b_A 223 PGKTLVVGASYVALECSGFLNSLGYD---VTVAVRSIVL--------------------RGFD----QQCAVKVKLYMEE 275 (542)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHHTCC---EEEEESSCSS--------------------TTSC----HHHHHHHHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCe---EEEecccccc--------------------cccc----hhHHHHHHHHHHh
Confidence 46899999999999999999999987 8999765321 1110 1112345667889
Q ss_pred cCcEEEeCceEEEEECCCcE--EEeCCCcEEEeceEEeecCCCcccc
Q 011700 84 HGIELVLGTRVKSADVRRKT--LVTATGETISYKILIIATGARALKL 128 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~--v~~~~g~~~~~d~lviAtG~~~~~~ 128 (479)
.|++++.++.+..+...... +.+.++.++.+|.|++|+|-+|+..
T Consensus 276 ~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~ 322 (542)
T 4b1b_A 276 QGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGDID 322 (542)
T ss_dssp TTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEESCG
T ss_pred hcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCCcc
Confidence 99999999998888765544 4557778899999999999888753
No 248
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=98.09 E-value=2.3e-05 Score=81.65 Aligned_cols=101 Identities=24% Similarity=0.236 Sum_probs=78.2
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc-cc-----------------------cc------------------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH-CM-----------------------AR------------------ 200 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-~l-----------------------~~------------------ 200 (479)
-.|+|||+|..|+++|..+++.|.+|.++++.+. +- ..
T Consensus 28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l~~ 107 (637)
T 2zxi_A 28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLNT 107 (637)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEEST
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeeccc
Confidence 4799999999999999999999999999997631 00 00
Q ss_pred -----------cCC-HHHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700 201 -----------LFT-PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 201 -----------~~~-~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~ 265 (479)
..+ ..+.+.+.+.+++ .|++++ +..|+++.. +++.+..|.+.+|+++.+|.||+|+|..++..
T Consensus 108 ~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~-e~g~V~GV~t~dG~~i~AdaVVLATG~~s~~~ 183 (637)
T 2zxi_A 108 RKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIV-KNNQVVGVRTNLGVEYKTKAVVVTTGTFLNGV 183 (637)
T ss_dssp TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEE-SSSBEEEEEETTSCEEECSEEEECCTTCBTCE
T ss_pred ccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEe-cCCEEEEEEECCCcEEEeCEEEEccCCCccCc
Confidence 001 1345566677777 599995 678999876 56777789999999999999999999876543
No 249
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=98.08 E-value=6.2e-06 Score=84.26 Aligned_cols=102 Identities=22% Similarity=0.256 Sum_probs=63.8
Q ss_pred CCCEEEECCChHHHHHHHHHhhC--CCeEEEEeecCcc------ccccCC------HHH-------HHHHHHHHHhCCcE
Q 011700 162 GGNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHC------MARLFT------PKI-------ASYYEEYYKSKGVK 220 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~------l~~~~~------~~~-------~~~~~~~l~~~GV~ 220 (479)
.++++|||+|+.|+.+|..|++. +.+|+++++.+.+ ++..+. .++ ........++.|++
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 82 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVE 82 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CE
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcE
Confidence 36899999999999999999998 8999999998763 111111 111 11222222357999
Q ss_pred EEcCCceEEEEEcCCCcEEEEEe-CCCc--EEeccEEEEecCCCCChh
Q 011700 221 FVKGTVLSSFDVDSNGKVVAVNL-RDGN--RLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 221 i~~~~~v~~i~~~~~g~v~~v~~-~~g~--~i~~D~Vi~a~G~~p~~~ 265 (479)
++.++++.+++. ++..+ .+.. .+|+ ++.+|.+++|+|.+|...
T Consensus 83 ~~~~~~V~~id~-~~~~v-~~~~~~~g~~~~~~~d~lviAtG~~p~~p 128 (472)
T 3iwa_A 83 ALVETRAHAIDR-AAHTV-EIENLRTGERRTLKYDKLVLALGSKANRP 128 (472)
T ss_dssp EECSEEEEEEET-TTTEE-EEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred EEECCEEEEEEC-CCCEE-EEeecCCCCEEEEECCEEEEeCCCCcCCC
Confidence 999999999986 33333 3332 3465 799999999999877653
No 250
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=98.08 E-value=7.3e-06 Score=83.61 Aligned_cols=98 Identities=17% Similarity=0.341 Sum_probs=72.0
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHH-H
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWY-N 82 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 82 (479)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... |.+. ......+.+.+ +
T Consensus 174 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l-------------------~~~d----~~~~~~l~~~l~~ 227 (468)
T 2qae_A 174 PKTMVVIGGGVIGLELGSVWARLGAE---VTVVEFAPRCA-------------------PTLD----EDVTNALVGALAK 227 (468)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS-------------------TTSC----HHHHHHHHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCE---EEEEecCCccc-------------------ccCC----HHHHHHHHHHHhh
Confidence 36899999999999999999998876 99999885310 0000 01113345667 8
Q ss_pred HcCcEEEeCceEEEEECCCc--EEEeC--CC--cEEEeceEEeecCCCccc
Q 011700 83 EHGIELVLGTRVKSADVRRK--TLVTA--TG--ETISYKILIIATGARALK 127 (479)
Q Consensus 83 ~~gv~~~~~~~v~~i~~~~~--~v~~~--~g--~~~~~d~lviAtG~~~~~ 127 (479)
+.|++++.+++|.+++.++. .+.+. +| +++.+|.||+|+|.+|..
T Consensus 228 ~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~ 278 (468)
T 2qae_A 228 NEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFT 278 (468)
T ss_dssp HTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEECC
T ss_pred cCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccCC
Confidence 89999999999999986542 34443 55 679999999999988864
No 251
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=98.08 E-value=1.5e-05 Score=78.74 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700 205 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 263 (479)
Q Consensus 205 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~ 263 (479)
.+.+.+.+.+++.|++++.+++|++++.+ ++.+ .+.+.+| ++.+|.||+|+|....
T Consensus 165 ~~~~~l~~~~~~~g~~i~~~~~v~~i~~~-~~~~-~v~~~~g-~~~a~~vV~A~G~~s~ 220 (382)
T 1ryi_A 165 FVCKAYVKAAKMLGAEIFEHTPVLHVERD-GEAL-FIKTPSG-DVWANHVVVASGVWSG 220 (382)
T ss_dssp HHHHHHHHHHHHTTCEEETTCCCCEEECS-SSSE-EEEETTE-EEEEEEEEECCGGGTH
T ss_pred HHHHHHHHHHHHCCCEEEcCCcEEEEEEE-CCEE-EEEcCCc-eEEcCEEEECCChhHH
Confidence 45566777888899999999999999873 4445 6777777 8999999999998644
No 252
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=98.08 E-value=5.8e-06 Score=84.65 Aligned_cols=97 Identities=18% Similarity=0.205 Sum_probs=72.3
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... + .++ ......+.+.+++
T Consensus 186 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l---~-------------~~~-------~~~~~~l~~~l~~ 239 (480)
T 3cgb_A 186 VEDVTIIGGGAIGLEMAETFVELGKK---VRMIERNDHIG---T-------------IYD-------GDMAEYIYKEADK 239 (480)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHTTCE---EEEECCGGGTT---S-------------SSC-------HHHHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCe---EEEEEeCCchh---h-------------cCC-------HHHHHHHHHHHHH
Confidence 57899999999999999999998876 99999875310 0 000 1111234566778
Q ss_pred cCcEEEeCceEEEEECCCcE--EEeCCCcEEEeceEEeecCCCccc
Q 011700 84 HGIELVLGTRVKSADVRRKT--LVTATGETISYKILIIATGARALK 127 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~--v~~~~g~~~~~d~lviAtG~~~~~ 127 (479)
.|++++.++.|.+++.+++. +.+ ++.++.+|.||+|+|.+|..
T Consensus 240 ~Gv~i~~~~~v~~i~~~~~v~~v~~-~~~~i~~D~vi~a~G~~p~~ 284 (480)
T 3cgb_A 240 HHIEILTNENVKAFKGNERVEAVET-DKGTYKADLVLVSVGVKPNT 284 (480)
T ss_dssp TTCEEECSCCEEEEEESSBEEEEEE-TTEEEECSEEEECSCEEESC
T ss_pred cCcEEEcCCEEEEEEcCCcEEEEEE-CCCEEEcCEEEECcCCCcCh
Confidence 99999999999999876543 344 45589999999999988764
No 253
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=98.07 E-value=2.2e-05 Score=81.66 Aligned_cols=98 Identities=16% Similarity=0.238 Sum_probs=75.3
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc--------cc------------cCC----------------HHH
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--------AR------------LFT----------------PKI 206 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l--------~~------------~~~----------------~~~ 206 (479)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+- +. .+. +++
T Consensus 17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i 96 (542)
T 1w4x_A 17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI 96 (542)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHHH
Confidence 469999999999999999999999999999875320 00 011 345
Q ss_pred HHHHHHHHHhCC--cEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC
Q 011700 207 ASYYEEYYKSKG--VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI 260 (479)
Q Consensus 207 ~~~~~~~l~~~G--V~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~ 260 (479)
.+.+.+..++.+ ++++++++|.+++.++++....|.+.+|+++.+|.||+|+|.
T Consensus 97 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~ 152 (542)
T 1w4x_A 97 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQ 152 (542)
T ss_dssp HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCS
T ss_pred HHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCC
Confidence 556666666655 678899999999875544445688889989999999999995
No 254
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=98.07 E-value=7.5e-06 Score=83.15 Aligned_cols=100 Identities=23% Similarity=0.316 Sum_probs=73.2
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||+|+.|+..|..|++.|.+ |+++++.+... .. .++ ......+.+.+++
T Consensus 149 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l------~~---------~~~-------~~~~~~l~~~l~~ 203 (452)
T 2cdu_A 149 AKTITIIGSGYIGAELAEAYSNQNYN---VNLIDGHERVL------YK---------YFD-------KEFTDILAKDYEA 203 (452)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCE---EEEEESSSSTT------TT---------TSC-------HHHHHHHHHHHHH
T ss_pred CCeEEEECcCHHHHHHHHHHHhcCCE---EEEEEcCCchh------hh---------hhh-------hhHHHHHHHHHHH
Confidence 46899999999999999999998875 99999875310 00 000 0111234566788
Q ss_pred cCcEEEeCceEEEEECCCcEE--EeCCCcEEEeceEEeecCCCcccc
Q 011700 84 HGIELVLGTRVKSADVRRKTL--VTATGETISYKILIIATGARALKL 128 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v--~~~~g~~~~~d~lviAtG~~~~~~ 128 (479)
.|++++.+++|.+++.++..+ ...+|+++.+|.||+|+|.+|...
T Consensus 204 ~Gv~i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G~~p~~~ 250 (452)
T 2cdu_A 204 HGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGFRPNTE 250 (452)
T ss_dssp TTCEEEESSCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCG
T ss_pred CCCEEEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEECcCCCCCHH
Confidence 999999999999998633322 234778899999999999988653
No 255
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.05 E-value=4.6e-06 Score=85.17 Aligned_cols=98 Identities=15% Similarity=0.287 Sum_probs=72.9
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... |.+. ......+.+.+++
T Consensus 177 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~l-------------------~~~~----~~~~~~l~~~l~~ 230 (470)
T 1dxl_A 177 PKKLVVIGAGYIGLEMGSVWGRIGSE---VTVVEFASEIV-------------------PTMD----AEIRKQFQRSLEK 230 (470)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTCE---EEEECSSSSSS-------------------TTSC----HHHHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCCccc-------------------cccc----HHHHHHHHHHHHH
Confidence 46899999999999999999998876 99999885310 0000 0111234566788
Q ss_pred cCcEEEeCceEEEEECCCc--EEEeC---CC--cEEEeceEEeecCCCccc
Q 011700 84 HGIELVLGTRVKSADVRRK--TLVTA---TG--ETISYKILIIATGARALK 127 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~--~v~~~---~g--~~~~~d~lviAtG~~~~~ 127 (479)
.||+++.++++.+++.++. .+.+. +| +++.+|.+|+|+|.+|..
T Consensus 231 ~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~ 281 (470)
T 1dxl_A 231 QGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFT 281 (470)
T ss_dssp SSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEECC
T ss_pred cCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcCC
Confidence 9999999999999987653 34443 44 679999999999998865
No 256
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=98.04 E-value=2.6e-05 Score=74.74 Aligned_cols=98 Identities=18% Similarity=0.196 Sum_probs=73.2
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeecCc---cc--------cc---cCCHHHHHHHHHHHHhCCcEEEcCCceEE
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH---CM--------AR---LFTPKIASYYEEYYKSKGVKFVKGTVLSS 229 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~---~l--------~~---~~~~~~~~~~~~~l~~~GV~i~~~~~v~~ 229 (479)
.|+|||+|+.|+.+|..|++.|.+|+++++... ++ +. ...+++.....+...+.++.+..+.....
T Consensus 8 DvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (312)
T 4gcm_A 8 DIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSV 87 (312)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECCCCEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccceeeeee
Confidence 489999999999999999999999999987531 11 10 11356777777778888888888776655
Q ss_pred EEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700 230 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 230 i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~ 265 (479)
... ... .....+++++.+|.+++|||.+|...
T Consensus 88 ~~~-~~~---~~~~~~~~~~~~d~liiAtGs~~~~~ 119 (312)
T 4gcm_A 88 EDK-GEY---KVINFGNKELTAKAVIIATGAEYKKI 119 (312)
T ss_dssp EEC-SSC---EEEECSSCEEEEEEEEECCCEEECCC
T ss_pred eee-ecc---eeeccCCeEEEeceeEEcccCccCcC
Confidence 543 222 34456778999999999999877653
No 257
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=98.04 E-value=2e-05 Score=79.95 Aligned_cols=101 Identities=18% Similarity=0.204 Sum_probs=78.0
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc---------------c---------------------------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA---------------R--------------------------- 200 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------------~--------------------------- 200 (479)
-+|+|||+|+.|+.+|..|++.|.+|+++++.+.... .
T Consensus 7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (453)
T 3atr_A 7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQT 86 (453)
T ss_dssp CSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCCce
Confidence 4799999999999999999999999999998653210 0
Q ss_pred ---------cCC-HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC---CCc--EEeccEEEEecCCCCCh
Q 011700 201 ---------LFT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DGN--RLPTDMVVVGIGIRPNT 264 (479)
Q Consensus 201 ---------~~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~---~g~--~i~~D~Vi~a~G~~p~~ 264 (479)
.++ ..+.+.+.+.+++.|++++.+++|++++. +++.+..|.+. +|+ ++.+|.||.|.|..+..
T Consensus 87 ~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~-~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~v 164 (453)
T 3atr_A 87 VWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIF-EDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRSF 164 (453)
T ss_dssp EEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEE-ETTEEEEEEEEETTTTEEEEEECSEEEECCGGGCTT
T ss_pred EEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCceEEEEcCEEEECcCCchhh
Confidence 001 24566677777789999999999999987 45555445553 675 79999999999987654
No 258
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=98.03 E-value=1.1e-05 Score=82.75 Aligned_cols=99 Identities=22% Similarity=0.270 Sum_probs=74.9
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||+|+.|+..|..+++.|.+ |+++++.+... +.+. ......+.+.+++
T Consensus 191 ~~~v~ViGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~l-------------------~~~~----~~~~~~l~~~l~~ 244 (484)
T 3o0h_A 191 PKSIVIVGGGYIGVEFANIFHGLGVK---TTLLHRGDLIL-------------------RNFD----YDLRQLLNDAMVA 244 (484)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS-------------------TTSC----HHHHHHHHHHHHH
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCe---EEEEECCCccc-------------------cccC----HHHHHHHHHHHHH
Confidence 36899999999999999999998876 99998875310 0000 0111234556778
Q ss_pred cCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCcccc
Q 011700 84 HGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALKL 128 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~~ 128 (479)
.|++++.++.|.+++.++. .+.+.+|+++.+|.||+|+|.+|...
T Consensus 245 ~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~~ 291 (484)
T 3o0h_A 245 KGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTT 291 (484)
T ss_dssp HTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCT
T ss_pred CCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcCCC
Confidence 8999999999999986543 56777888999999999999887643
No 259
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=98.01 E-value=1.1e-05 Score=84.47 Aligned_cols=98 Identities=18% Similarity=0.281 Sum_probs=73.5
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... +.+. ........+.+++
T Consensus 151 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l-------------------~~~~----~~~~~~l~~~l~~ 204 (565)
T 3ntd_A 151 VEHATVVGGGFIGLEMMESLHHLGIK---TTLLELADQVM-------------------TPVD----REMAGFAHQAIRD 204 (565)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSSC-------------------TTSC----HHHHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCc---EEEEEcCCccc-------------------hhcC----HHHHHHHHHHHHH
Confidence 35899999999999999999998876 99999875310 0000 0111234556788
Q ss_pred cCcEEEeCceEEEEEC-------------------CCc--EEEeCCCcEEEeceEEeecCCCccc
Q 011700 84 HGIELVLGTRVKSADV-------------------RRK--TLVTATGETISYKILIIATGARALK 127 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~-------------------~~~--~v~~~~g~~~~~d~lviAtG~~~~~ 127 (479)
.|++++.++.+.+++. ... .+.+.+|+++.+|.||+|+|.+|..
T Consensus 205 ~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 269 (565)
T 3ntd_A 205 QGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPET 269 (565)
T ss_dssp TTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred CCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCccch
Confidence 9999999999998875 222 4566788899999999999988764
No 260
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=98.00 E-value=2.6e-05 Score=77.29 Aligned_cols=99 Identities=16% Similarity=0.188 Sum_probs=76.3
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc--------------------c----------------------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA--------------------R---------------------- 200 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--------------------~---------------------- 200 (479)
-.|+|||+|+.|+-+|..|++.|.+|+++++.+.+-. .
T Consensus 5 ~dVvIvG~G~aGl~~A~~La~~G~~V~l~E~~~~~g~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (397)
T 3cgv_A 5 YDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRPI 84 (397)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSCE
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCcccccccCHHHHHHcCCCCChHHhhhhcceEEEEcCCCCEEE
Confidence 3699999999999999999999999999998742100 0
Q ss_pred cCC--------------HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe---CCCcEEeccEEEEecCCCC
Q 011700 201 LFT--------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGNRLPTDMVVVGIGIRP 262 (479)
Q Consensus 201 ~~~--------------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~---~~g~~i~~D~Vi~a~G~~p 262 (479)
.++ ..+.+.+.+.+++.|++++.+++|++++.+ ++.+..|.+ .++.++.+|.||.|.|...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~~~~~~a~~vV~A~G~~s 162 (397)
T 3cgv_A 85 ILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKE-NGKVAGAKIRHNNEIVDVRAKMVIAADGFES 162 (397)
T ss_dssp EEC-----CCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEE-TTEEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred EEeccccCCceeEEEeHHHHHHHHHHHHHhCCCEEEECCEEEEEEEe-CCEEEEEEEEECCeEEEEEcCEEEECCCcch
Confidence 000 124466777777889999999999999873 566654665 3456899999999999876
No 261
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=97.99 E-value=4.7e-05 Score=79.63 Aligned_cols=101 Identities=14% Similarity=0.299 Sum_probs=77.1
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc------------------------cc------------------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM------------------------AR------------------ 200 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l------------------------~~------------------ 200 (479)
-.|+|||+|..|+++|..+++.|.+|+++++.+..+ ..
T Consensus 22 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~l~~ 101 (641)
T 3cp8_A 22 YDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRMLNR 101 (641)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEEECS
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhhccc
Confidence 479999999999999999999999999999763100 00
Q ss_pred -----------cCC-HHHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700 201 -----------LFT-PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 201 -----------~~~-~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~ 265 (479)
..+ ..+.+.+.+.+++ .|++++.+ .+..+.. +++.+..|.+.+|+++.+|.||+|+|..++..
T Consensus 102 ~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~-~V~~L~~-d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~~~ 177 (641)
T 3cp8_A 102 SKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQD-TVIGVSA-NSGKFSSVTVRSGRAIQAKAAILACGTFLNGL 177 (641)
T ss_dssp SSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEEC-CEEEEEE-ETTEEEEEEETTSCEEEEEEEEECCTTCBTCE
T ss_pred ccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEee-EEEEEEe-cCCEEEEEEECCCcEEEeCEEEECcCCCCCcc
Confidence 011 1445566677777 49999654 7888876 45667778888999999999999999876543
No 262
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=97.98 E-value=5.7e-05 Score=79.13 Aligned_cols=102 Identities=22% Similarity=0.319 Sum_probs=79.6
Q ss_pred CCEEEECCChHHHHHHHHHhhC------CCeEEEEeecCccccc------------------------------------
Q 011700 163 GNAVVIGGGYIGMECAASLVIN------KINVTMVFPEAHCMAR------------------------------------ 200 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~------g~~Vtlv~~~~~~l~~------------------------------------ 200 (479)
-.|+|||+|+.|+-+|..|++. |.+|+++++.+.+-..
T Consensus 36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~~ 115 (584)
T 2gmh_A 36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFG 115 (584)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEE
T ss_pred CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhhee
Confidence 4799999999999999999998 9999999976432100
Q ss_pred --------cC---C--------------HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC------CC---
Q 011700 201 --------LF---T--------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR------DG--- 246 (479)
Q Consensus 201 --------~~---~--------------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~------~g--- 246 (479)
.+ + ..+.+.+.+.+++.||+++.++.++++..++++.+..|.+. +|
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~ 195 (584)
T 2gmh_A 116 ILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPK 195 (584)
T ss_dssp EECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEE
T ss_pred eeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcc
Confidence 00 0 14556677778888999999999999987556777667765 33
Q ss_pred ------cEEeccEEEEecCCCCCh
Q 011700 247 ------NRLPTDMVVVGIGIRPNT 264 (479)
Q Consensus 247 ------~~i~~D~Vi~a~G~~p~~ 264 (479)
.++.+|.||.|.|.....
T Consensus 196 ~~~~~g~~i~Ad~VV~AdG~~S~v 219 (584)
T 2gmh_A 196 TTFERGLELHAKVTIFAEGCHGHL 219 (584)
T ss_dssp EEEECCCEEECSEEEECCCTTCHH
T ss_pred cccCCceEEECCEEEEeeCCCchH
Confidence 689999999999988754
No 263
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=97.97 E-value=1.3e-05 Score=82.30 Aligned_cols=98 Identities=19% Similarity=0.203 Sum_probs=70.8
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... +.+. ........+.+++
T Consensus 174 ~k~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~~l-------------------~~~d----~~~~~~l~~~l~~ 227 (492)
T 3ic9_A 174 PKSVAVFGPGVIGLELGQALSRLGVI---VKVFGRSGSVA-------------------NLQD----EEMKRYAEKTFNE 227 (492)
T ss_dssp CSEEEEESSCHHHHHHHHHHHHTTCE---EEEECCTTCCT-------------------TCCC----HHHHHHHHHHHHT
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEECCccc-------------------ccCC----HHHHHHHHHHHhh
Confidence 36899999999999999999998876 99999885310 0000 0111233445556
Q ss_pred cCcEEEeCceEEEEECCCc--EEEeC--CC--cEEEeceEEeecCCCcccc
Q 011700 84 HGIELVLGTRVKSADVRRK--TLVTA--TG--ETISYKILIIATGARALKL 128 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~--~v~~~--~g--~~~~~d~lviAtG~~~~~~ 128 (479)
. |+++.++.+.+++.++. .+.+. +| +++.+|.||+|+|.+|...
T Consensus 228 ~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~ 277 (492)
T 3ic9_A 228 E-FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANVD 277 (492)
T ss_dssp T-SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEESCS
T ss_pred C-cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccCCC
Confidence 6 99999999999876543 34443 56 6799999999999988653
No 264
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=97.96 E-value=1e-05 Score=85.71 Aligned_cols=35 Identities=20% Similarity=0.388 Sum_probs=31.7
Q ss_pred cCeEEEECCchHHHHHHHHHHHc------CCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKR------GVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~------g~~~~~V~lie~~~~ 41 (479)
++||||||||+||++||++|++. |.+ |+|||+.+.
T Consensus 22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~---V~vleK~~~ 62 (662)
T 3gyx_A 22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAK---ILLVDKASL 62 (662)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCC---EEEECSSCT
T ss_pred EcCEEEECCCHHHHHHHHHHHhhccccCCCCc---EEEEEecCC
Confidence 48999999999999999999997 877 999999754
No 265
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=97.96 E-value=4e-06 Score=85.14 Aligned_cols=89 Identities=18% Similarity=0.192 Sum_probs=69.7
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc-------ccc-cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEc
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC-------MAR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVD 233 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~-------l~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~ 233 (479)
+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+ ++. .++.++.+...+.+++.||++++++.+..
T Consensus 122 ~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~---- 197 (456)
T 2vdc_G 122 GLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEVGR---- 197 (456)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHHTTCEEETTCCBTT----
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCcEEEeCCEecc----
Confidence 578999999999999999999999999999998764 222 13667777888889999999999986520
Q ss_pred CCCcEEEEEeCCCcEEeccEEEEecCCC
Q 011700 234 SNGKVVAVNLRDGNRLPTDMVVVGIGIR 261 (479)
Q Consensus 234 ~~g~v~~v~~~~g~~i~~D~Vi~a~G~~ 261 (479)
.+.+.++ .+.+|.|++|+|..
T Consensus 198 ------~v~~~~~-~~~~d~vvlAtG~~ 218 (456)
T 2vdc_G 198 ------DASLPEL-RRKHVAVLVATGVY 218 (456)
T ss_dssp ------TBCHHHH-HSSCSEEEECCCCC
T ss_pred ------EEEhhHh-HhhCCEEEEecCCC
Confidence 1222222 35799999999986
No 266
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=97.95 E-value=1.5e-05 Score=81.24 Aligned_cols=96 Identities=17% Similarity=0.184 Sum_probs=72.3
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... + . + ......+.+.+++
T Consensus 176 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l---~-~-------------~-------~~~~~~l~~~l~~ 228 (467)
T 1zk7_A 176 PERLAVIGSSVVALELAQAFARLGSK---VTVLARNTLFF---R-E-------------D-------PAIGEAVTAAFRA 228 (467)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCTTT---T-S-------------C-------HHHHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCE---EEEEEECCccC---C-C-------------C-------HHHHHHHHHHHHh
Confidence 36899999999999999999998876 99999875310 0 0 0 0111334566788
Q ss_pred cCcEEEeCceEEEEECCCcE--EEeCCCcEEEeceEEeecCCCccc
Q 011700 84 HGIELVLGTRVKSADVRRKT--LVTATGETISYKILIIATGARALK 127 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~--v~~~~g~~~~~d~lviAtG~~~~~ 127 (479)
.|++++.+++|.+++.++.. +.+. +.++.+|.||+|+|.+|..
T Consensus 229 ~Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~ 273 (467)
T 1zk7_A 229 EGIEVLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGRTPNT 273 (467)
T ss_dssp TTCEEETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCEEESC
T ss_pred CCCEEEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcCC
Confidence 99999999999999765543 4444 5689999999999998764
No 267
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=97.95 E-value=3.9e-05 Score=80.32 Aligned_cols=101 Identities=19% Similarity=0.242 Sum_probs=78.8
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc------------------------------------------
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA------------------------------------------ 199 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------ 199 (479)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+....
T Consensus 23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 102 (591)
T 3i3l_A 23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWGQDQ 102 (591)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECSSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEecCCC
Confidence 46899999999999999999999999999998621000
Q ss_pred ----------c----------cCC-HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC-CC--cEEeccEEE
Q 011700 200 ----------R----------LFT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DG--NRLPTDMVV 255 (479)
Q Consensus 200 ----------~----------~~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~-~g--~~i~~D~Vi 255 (479)
. .++ ..+.+.+.+.+++.|++++.+++|++++.+ ++....|.+. +| .++.+|.||
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~-~g~~~~V~~~~~G~~~~i~AdlVV 181 (591)
T 3i3l_A 103 APWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLS-DPDRVVLTVRRGGESVTVESDFVI 181 (591)
T ss_dssp CCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECC-STTCEEEEEEETTEEEEEEESEEE
T ss_pred ccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCCEEEEEEecCCceEEEEcCEEE
Confidence 0 011 345667777888899999999999999863 4555567776 66 579999999
Q ss_pred EecCCCCC
Q 011700 256 VGIGIRPN 263 (479)
Q Consensus 256 ~a~G~~p~ 263 (479)
.|+|....
T Consensus 182 ~AdG~~S~ 189 (591)
T 3i3l_A 182 DAGGSGGP 189 (591)
T ss_dssp ECCGGGCH
T ss_pred ECCCCcch
Confidence 99998664
No 268
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=97.95 E-value=6e-05 Score=74.91 Aligned_cols=100 Identities=17% Similarity=0.165 Sum_probs=72.6
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc------cCCHHHH------------------------------
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------LFTPKIA------------------------------ 207 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------~~~~~~~------------------------------ 207 (479)
+|+|||+|+.|+-+|..|++.|.+|+|+++.+.+... .+.+...
T Consensus 3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~ 82 (412)
T 4hb9_A 3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFYN 82 (412)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEEC
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEec
Confidence 6999999999999999999999999999976433211 0011100
Q ss_pred -----------------------------HHHHHHHH-hCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEe
Q 011700 208 -----------------------------SYYEEYYK-SKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG 257 (479)
Q Consensus 208 -----------------------------~~~~~~l~-~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a 257 (479)
..+.+.|. ..+.++++++++++++..+++.+ .+.+.||+++++|+||-|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~v~~~~~v~~~~~~~~~~v-~v~~~dG~~~~adlvVgA 161 (412)
T 4hb9_A 83 ERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGLANTIQWNKTFVRYEHIENGGI-KIFFADGSHENVDVLVGA 161 (412)
T ss_dssp TTSCEEEC--------------CEEEEEHHHHHHHHHTTCTTTEECSCCEEEEEECTTSCE-EEEETTSCEEEESEEEEC
T ss_pred CCcceecccCCccccccccccccceEeeHHHHHHHHHhhccceEEEEEEEEeeeEcCCCeE-EEEECCCCEEEeeEEEEC
Confidence 11222222 23446788999999987566655 688999999999999999
Q ss_pred cCCCCCh
Q 011700 258 IGIRPNT 264 (479)
Q Consensus 258 ~G~~p~~ 264 (479)
-|.....
T Consensus 162 DG~~S~v 168 (412)
T 4hb9_A 162 DGSNSKV 168 (412)
T ss_dssp CCTTCHH
T ss_pred CCCCcch
Confidence 9987654
No 269
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=97.94 E-value=1.8e-05 Score=80.62 Aligned_cols=98 Identities=21% Similarity=0.194 Sum_probs=73.8
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||+|+.|+..|..+++.|.+ |+++++.+... +.+. ......+.+.+++
T Consensus 170 ~~~v~ViGgG~~g~e~A~~l~~~g~~---Vt~v~~~~~~l-------------------~~~~----~~~~~~l~~~l~~ 223 (463)
T 4dna_A 170 PESILIAGGGYIAVEFANIFHGLGVK---TTLIYRGKEIL-------------------SRFD----QDMRRGLHAAMEE 223 (463)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS-------------------TTSC----HHHHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCccc-------------------cccC----HHHHHHHHHHHHH
Confidence 46899999999999999999998876 99999875310 0000 0111334566788
Q ss_pred cCcEEEeCceEEEEECCC-c--EEE-eCCCcEEEeceEEeecCCCcccc
Q 011700 84 HGIELVLGTRVKSADVRR-K--TLV-TATGETISYKILIIATGARALKL 128 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~-~--~v~-~~~g~~~~~d~lviAtG~~~~~~ 128 (479)
.|++++.++.|.+++.++ . .+. +.+|+ +.+|.||+|+|.+|...
T Consensus 224 ~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~~ 271 (463)
T 4dna_A 224 KGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRMPNTN 271 (463)
T ss_dssp TTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEEESCT
T ss_pred CCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccCCC
Confidence 999999999999998652 2 566 77777 99999999999887643
No 270
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=97.93 E-value=4.2e-05 Score=74.44 Aligned_cols=94 Identities=18% Similarity=0.274 Sum_probs=67.7
Q ss_pred CEEEECCChHHHHHHHHHhh---CCCeEEEEeecCccccc-------------------c---CCH---HHH--------
Q 011700 164 NAVVIGGGYIGMECAASLVI---NKINVTMVFPEAHCMAR-------------------L---FTP---KIA-------- 207 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~---~g~~Vtlv~~~~~~l~~-------------------~---~~~---~~~-------- 207 (479)
+|+|||+|..|+-+|..|++ .|.+|+++++.+.+-.+ . .+. .+.
T Consensus 3 dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~ 82 (342)
T 3qj4_A 3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDELLA 82 (342)
T ss_dssp EEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHHHH
T ss_pred cEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHHHh
Confidence 69999999999999999999 89999999976422100 0 000 111
Q ss_pred ------------------------------HHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEe
Q 011700 208 ------------------------------SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG 257 (479)
Q Consensus 208 ------------------------------~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a 257 (479)
..+....++.|++++++++|++|+.++++ + .|.+.+|+++.+|.||+|
T Consensus 83 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~-~-~v~~~~g~~~~ad~vV~A 160 (342)
T 3qj4_A 83 YGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDK-W-EVSKQTGSPEQFDLIVLT 160 (342)
T ss_dssp TTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSS-E-EEEESSSCCEEESEEEEC
T ss_pred CCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCE-E-EEEECCCCEEEcCEEEEC
Confidence 11122223348999999999999984433 3 578888888999999999
Q ss_pred cC
Q 011700 258 IG 259 (479)
Q Consensus 258 ~G 259 (479)
++
T Consensus 161 ~p 162 (342)
T 3qj4_A 161 MP 162 (342)
T ss_dssp SC
T ss_pred CC
Confidence 85
No 271
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Probab=97.93 E-value=1.3e-05 Score=85.37 Aligned_cols=35 Identities=26% Similarity=0.271 Sum_probs=32.2
Q ss_pred cCeEEEECCchHHHHHHHHHHH-----cCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTK-----RGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~-----~g~~~~~V~lie~~~~ 41 (479)
++||+||||||+|+++|..|++ .|.+ |+|||+.+.
T Consensus 8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~---v~viE~~~~ 47 (665)
T 1pn0_A 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLK---VRIIDKRST 47 (665)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTCC---EEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHhccccccCCCC---EEEEeCCCC
Confidence 5799999999999999999999 8987 999998764
No 272
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=97.93 E-value=6e-05 Score=78.80 Aligned_cols=106 Identities=19% Similarity=0.182 Sum_probs=78.9
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc-----------------------------------------
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------------- 200 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------- 200 (479)
..+|+|||+|..|+..|..|++.|.+|+++++.+.+...
T Consensus 126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~ 205 (572)
T 1d4d_A 126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIND 205 (572)
T ss_dssp ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTCSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence 358999999999999999999999999999976532100
Q ss_pred --------------------------------------c--------CCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcC
Q 011700 201 --------------------------------------L--------FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDS 234 (479)
Q Consensus 201 --------------------------------------~--------~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~ 234 (479)
. ....+.+.+.+.+++.||+++++++++++..++
T Consensus 206 ~~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~ 285 (572)
T 1d4d_A 206 PELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDA 285 (572)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEEC-
T ss_pred HHHHHHHHHccHHHHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHcCCeEEecCEEEEEEECC
Confidence 0 012344556677788899999999999998733
Q ss_pred CCcEEEEEeC--CCc--EEeccEEEEecCCCCC-hhhh
Q 011700 235 NGKVVAVNLR--DGN--RLPTDMVVVGIGIRPN-TSLF 267 (479)
Q Consensus 235 ~g~v~~v~~~--~g~--~i~~D~Vi~a~G~~p~-~~l~ 267 (479)
++++..|... +|+ ++.+|.||+|+|..+. .+++
T Consensus 286 ~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~ 323 (572)
T 1d4d_A 286 SGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERV 323 (572)
T ss_dssp -CCEEEEEEEETTTEEEEEECSEEEECCCCCTTCHHHH
T ss_pred CCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCccCHHHH
Confidence 2777666664 564 6899999999997664 4444
No 273
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=97.92 E-value=8.9e-06 Score=83.63 Aligned_cols=100 Identities=18% Similarity=0.333 Sum_probs=68.5
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc---------cCCH-HHHHHHHHHH--HhCCcEEEcCCceEEE
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR---------LFTP-KIASYYEEYY--KSKGVKFVKGTVLSSF 230 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~---------~~~~-~~~~~~~~~l--~~~GV~i~~~~~v~~i 230 (479)
++|||||+|+.|+.+|..|.+.+.+||++++++.+.-. .+++ ++...+.+.+ ++.+++++.+ ++++|
T Consensus 43 prVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~~-~v~~I 121 (502)
T 4g6h_A 43 PNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEA-EATSI 121 (502)
T ss_dssp CEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEEE-EEEEE
T ss_pred CCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhhcCCeEEEEE-EEEEE
Confidence 57999999999999999999999999999998754211 1111 1111223322 3457888865 57888
Q ss_pred EEcCCCcEEEEEe------------------CCCcEEeccEEEEecCCCCChh
Q 011700 231 DVDSNGKVVAVNL------------------RDGNRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 231 ~~~~~g~v~~v~~------------------~~g~~i~~D~Vi~a~G~~p~~~ 265 (479)
+.+ ...+ .+.. .++.++++|.+|+|+|.+|+..
T Consensus 122 D~~-~k~V-~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~ 172 (502)
T 4g6h_A 122 NPD-RNTV-TIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTF 172 (502)
T ss_dssp EGG-GTEE-EEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCT
T ss_pred Ehh-hCEE-EEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccC
Confidence 762 2222 2221 3467899999999999988764
No 274
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=97.92 E-value=1.7e-05 Score=81.35 Aligned_cols=102 Identities=17% Similarity=0.190 Sum_probs=72.0
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCC-CCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVP-PGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN 82 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~-~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (479)
..+++|||||+.|+.+|..|++.+.+ ..+|+++++.+.. .. ..++. .......+.++
T Consensus 180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~-~~--------------~~l~~-------~~~~~~~~~l~ 237 (493)
T 1m6i_A 180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGN-MG--------------KILPE-------YLSNWTMEKVR 237 (493)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSST-TT--------------TTSCH-------HHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCccc-cc--------------ccCCH-------HHHHHHHHHHH
Confidence 36899999999999999998874211 1248999876421 00 00110 01123455677
Q ss_pred HcCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCccc
Q 011700 83 EHGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALK 127 (479)
Q Consensus 83 ~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~ 127 (479)
+.||+++.++.|.+++.++. .+.+.+|+++.+|.||+|+|.+|..
T Consensus 238 ~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~ 284 (493)
T 1m6i_A 238 REGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNV 284 (493)
T ss_dssp TTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECC
T ss_pred hcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCccH
Confidence 88999999999999875433 4667788899999999999998764
No 275
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=97.92 E-value=5.6e-05 Score=75.25 Aligned_cols=101 Identities=18% Similarity=0.240 Sum_probs=71.7
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc----c--C-C---HHH-------------------------
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----L--F-T---PKI------------------------- 206 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~----~--~-~---~~~------------------------- 206 (479)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+..+ . + . .++
T Consensus 26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 105 (398)
T 2xdo_A 26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADEK 105 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEECSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEECCC
Confidence 468999999999999999999999999999987543110 0 0 0 000
Q ss_pred ---------------------HHHHHHHHHh--CCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700 207 ---------------------ASYYEEYYKS--KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 263 (479)
Q Consensus 207 ---------------------~~~~~~~l~~--~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~ 263 (479)
...+.+.|.+ .+++++++++|++++.+++ .+ .+++.+|+++.+|.||.|.|....
T Consensus 106 g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~-~v-~v~~~~g~~~~ad~vV~AdG~~S~ 183 (398)
T 2xdo_A 106 GNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKK-KW-TLTFENKPSETADLVILANGGMSK 183 (398)
T ss_dssp SEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSS-SE-EEEETTSCCEEESEEEECSCTTCS
T ss_pred CCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCC-EE-EEEECCCcEEecCEEEECCCcchh
Confidence 0111222221 1357888999999987443 33 578889989999999999998765
Q ss_pred h
Q 011700 264 T 264 (479)
Q Consensus 264 ~ 264 (479)
.
T Consensus 184 v 184 (398)
T 2xdo_A 184 V 184 (398)
T ss_dssp C
T ss_pred H
Confidence 4
No 276
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=97.92 E-value=1.3e-05 Score=82.06 Aligned_cols=98 Identities=18% Similarity=0.133 Sum_probs=70.9
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||+|+.|+..|..|++.|.+ |+++++....+ .+. ........+.+++
T Consensus 187 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~l~--------------------~~d----~~~~~~l~~~l~~ 239 (483)
T 3dgh_A 187 PGKTLVVGAGYIGLECAGFLKGLGYE---PTVMVRSIVLR--------------------GFD----QQMAELVAASMEE 239 (483)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSCSST--------------------TSC----HHHHHHHHHHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCE---EEEEeCCCCCc--------------------ccC----HHHHHHHHHHHHh
Confidence 35899999999999999999998876 99998753110 000 0111334566788
Q ss_pred cCcEEEeCceEEEEECCC---cEEEeCCCc-----EEEeceEEeecCCCcccc
Q 011700 84 HGIELVLGTRVKSADVRR---KTLVTATGE-----TISYKILIIATGARALKL 128 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~---~~v~~~~g~-----~~~~d~lviAtG~~~~~~ 128 (479)
.||+++.++.+.+++.+. ..+.+.++. ++.+|.||+|+|.+|...
T Consensus 240 ~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~ 292 (483)
T 3dgh_A 240 RGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVD 292 (483)
T ss_dssp TTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEECCG
T ss_pred CCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccCcC
Confidence 999999999999887532 235554432 789999999999887643
No 277
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=97.91 E-value=2.6e-05 Score=79.64 Aligned_cols=98 Identities=19% Similarity=0.355 Sum_probs=72.8
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||+|+.|+..|..|++.|.+ |+++++.+... +.+. ........+.+++
T Consensus 180 ~~~v~ViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l-------------------~~~~----~~~~~~l~~~l~~ 233 (476)
T 3lad_A 180 PGKLGVIGAGVIGLELGSVWARLGAE---VTVLEAMDKFL-------------------PAVD----EQVAKEAQKILTK 233 (476)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSSS-------------------TTSC----HHHHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCcC-------------------cccC----HHHHHHHHHHHHh
Confidence 36899999999999999999998876 99999875310 0000 0111334566788
Q ss_pred cCcEEEeCceEEEEECCCc--EEEeCCC---cEEEeceEEeecCCCccc
Q 011700 84 HGIELVLGTRVKSADVRRK--TLVTATG---ETISYKILIIATGARALK 127 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~--~v~~~~g---~~~~~d~lviAtG~~~~~ 127 (479)
.||+++.++.+.+++.++. .+.+.++ +++.+|.+|+|+|.+|..
T Consensus 234 ~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~ 282 (476)
T 3lad_A 234 QGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVT 282 (476)
T ss_dssp TTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEECC
T ss_pred CCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccC
Confidence 9999999999999886543 3445443 679999999999988765
No 278
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=97.91 E-value=6.4e-05 Score=77.52 Aligned_cols=101 Identities=19% Similarity=0.202 Sum_probs=76.9
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc--------cccc----------------------------------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH--------CMAR---------------------------------- 200 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~--------~l~~---------------------------------- 200 (479)
.+|+|||+|+.|+-+|..|++.|.+|+|+++.+. +.+.
T Consensus 8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~ 87 (512)
T 3e1t_A 8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWGKEP 87 (512)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECSSCS
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEecCCc
Confidence 4799999999999999999999999999998741 0000
Q ss_pred -------------------cCC-HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEE--eCCCc--EEeccEEEE
Q 011700 201 -------------------LFT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN--LRDGN--RLPTDMVVV 256 (479)
Q Consensus 201 -------------------~~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~--~~~g~--~i~~D~Vi~ 256 (479)
.++ ..+.+.+.+.+++.|++++.+++|++++. +++.+..+. ..+|+ ++.+|.||.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~-~~~~v~gv~~~~~dG~~~~i~ad~VI~ 166 (512)
T 3e1t_A 88 EPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLF-EGERAVGVRYRNTEGVELMAHARFIVD 166 (512)
T ss_dssp SCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEE-ETTEEEEEEEECSSSCEEEEEEEEEEE
T ss_pred cccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEE-ECCEEEEEEEEeCCCCEEEEEcCEEEE
Confidence 011 24556677777889999999999999987 455554444 45674 799999999
Q ss_pred ecCCCCCh
Q 011700 257 GIGIRPNT 264 (479)
Q Consensus 257 a~G~~p~~ 264 (479)
|+|.....
T Consensus 167 AdG~~S~v 174 (512)
T 3e1t_A 167 ASGNRTRV 174 (512)
T ss_dssp CCCTTCSS
T ss_pred CCCcchHH
Confidence 99987644
No 279
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=97.90 E-value=2.3e-05 Score=80.38 Aligned_cols=98 Identities=18% Similarity=0.314 Sum_probs=72.0
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||+.|+..|..|++.|.+ |+++++.+... +.+. ........+.+++
T Consensus 198 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l-------------------~~~d----~~~~~~l~~~l~~ 251 (491)
T 3urh_A 198 PASMIVVGGGVIGLELGSVWARLGAK---VTVVEFLDTIL-------------------GGMD----GEVAKQLQRMLTK 251 (491)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCE---EEEECSSSSSS-------------------SSSC----HHHHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCE---EEEEecccccc-------------------ccCC----HHHHHHHHHHHHh
Confidence 46899999999999999999998876 99998875310 0000 0111334566778
Q ss_pred cCcEEEeCceEEEEECCCcE--EEeCC---C--cEEEeceEEeecCCCccc
Q 011700 84 HGIELVLGTRVKSADVRRKT--LVTAT---G--ETISYKILIIATGARALK 127 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~--v~~~~---g--~~~~~d~lviAtG~~~~~ 127 (479)
.||+++.++++.+++.++.. +.+.+ | +++.+|.||+|+|.+|..
T Consensus 252 ~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~ 302 (491)
T 3urh_A 252 QGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPST 302 (491)
T ss_dssp TTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECC
T ss_pred CCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCC
Confidence 89999999999988765443 34432 4 579999999999988765
No 280
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=97.89 E-value=5.3e-05 Score=75.57 Aligned_cols=100 Identities=19% Similarity=0.265 Sum_probs=75.6
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc-----------------------------------------
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------------- 200 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------- 200 (479)
.-+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.+.
T Consensus 23 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~g 102 (407)
T 3rp8_A 23 HMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRSG 102 (407)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECCCC
Confidence 468999999999999999999999999999987532100
Q ss_pred ----cC-----------------CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecC
Q 011700 201 ----LF-----------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 259 (479)
Q Consensus 201 ----~~-----------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G 259 (479)
.+ ...+.+.+.+.+++ ++++.+++|++++.++ +. ..+.+.+|+++.+|.||.|.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~-~~-v~v~~~~g~~~~a~~vV~AdG 178 (407)
T 3rp8_A 103 ENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDA-DG-VTVWFTDGSSASGDLLIAADG 178 (407)
T ss_dssp CEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEET-TE-EEEEETTSCEEEESEEEECCC
T ss_pred CEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecC-Cc-EEEEEcCCCEEeeCEEEECCC
Confidence 00 02233445555544 8899999999998743 33 358889999999999999999
Q ss_pred CCCChh
Q 011700 260 IRPNTS 265 (479)
Q Consensus 260 ~~p~~~ 265 (479)
......
T Consensus 179 ~~S~vr 184 (407)
T 3rp8_A 179 SHSALR 184 (407)
T ss_dssp TTCSSH
T ss_pred cChHHH
Confidence 876654
No 281
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=97.87 E-value=6.6e-05 Score=73.73 Aligned_cols=54 Identities=15% Similarity=0.211 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700 206 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 262 (479)
Q Consensus 206 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p 262 (479)
+.+.+.+.+++.|++++.+++|++++.+++ .+ .+.+.+| ++.+|.||+|+|...
T Consensus 151 l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~-~~-~v~~~~g-~~~a~~vV~a~G~~s 204 (372)
T 2uzz_A 151 AIKTWIQLAKEAGCAQLFNCPVTAIRHDDD-GV-TIETADG-EYQAKKAIVCAGTWV 204 (372)
T ss_dssp HHHHHHHHHHHTTCEEECSCCEEEEEECSS-SE-EEEESSC-EEEEEEEEECCGGGG
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEEcCC-EE-EEEECCC-eEEcCEEEEcCCccH
Confidence 444566677788999999999999987433 33 5677777 599999999999643
No 282
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=97.87 E-value=0.00013 Score=70.01 Aligned_cols=165 Identities=16% Similarity=0.181 Sum_probs=100.7
Q ss_pred CCCEEEECCChHHHHHHHHHhhC--CCeEEEEeecCcccccc-------------------------------------C
Q 011700 162 GGNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMARL-------------------------------------F 202 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~l~~~-------------------------------------~ 202 (479)
.-+++|||+|+.|+.+|..|++. |.+|+++++.+.+-... .
T Consensus 65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~~~~~~ 144 (326)
T 2gjc_A 65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKH 144 (326)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSEEEESC
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccccCCCeEEEcc
Confidence 34899999999999999999998 99999999864431000 1
Q ss_pred CHHHHHHHHHHHHh-CCcEEEcCCceEEEEEcC--C-C--cEEEEEeC--------------CCcEEec-----------
Q 011700 203 TPKIASYYEEYYKS-KGVKFVKGTVLSSFDVDS--N-G--KVVAVNLR--------------DGNRLPT----------- 251 (479)
Q Consensus 203 ~~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~--~-g--~v~~v~~~--------------~g~~i~~----------- 251 (479)
..++.+.+.+.+.+ .||+++.++.+.++..++ + + ++..+... ++.++.+
T Consensus 145 ~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~ 224 (326)
T 2gjc_A 145 AALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDL 224 (326)
T ss_dssp HHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCS
T ss_pred hHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeeccccccccc
Confidence 23445556666666 499999999999998743 3 4 67776542 3357999
Q ss_pred ----cEEEEecCCCCChh-hhhcccc-c-ccC------cE--------EEcCccc-CCCCCeEEEeeeccccccccCcee
Q 011700 252 ----DMVVVGIGIRPNTS-LFEGQLT-L-EKG------GI--------KVTGRLQ-SSNSSVYAVGDVAAFPLKLLGETR 309 (479)
Q Consensus 252 ----D~Vi~a~G~~p~~~-l~~~~~~-~-~~g------~i--------~Vd~~l~-t~~~~IyA~GD~~~~~~~~~g~~~ 309 (479)
|.||.|+|...... ++...+. . ..+ .. .|+..-. +-+|++|++|-...... |.++
T Consensus 225 ~~~~~~VV~ATG~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~r 301 (326)
T 2gjc_A 225 SQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELD---GLNR 301 (326)
T ss_dssp STTCCEEEECCCCC--CCSHHHHHHHHHHSSCCCCCCCCBCHHHHHHHHHHHCEECTTSTTEEECTHHHHHHH---TCCB
T ss_pred cccCCEEEECcCCCchHHHHHHhhccccccccccCceeccccccchhheeecCCCccccCCEEECChHHHHhc---CCCC
Confidence 99999999775442 2221100 0 000 11 1121122 15899999998875321 1111
Q ss_pred ecccHHHHHHHHHHHHHHHc
Q 011700 310 RLEHVDSARKSAKHAVAAIM 329 (479)
Q Consensus 310 ~~~~~~~A~~~g~~aa~~i~ 329 (479)
-=+....-...|+.||+.|+
T Consensus 302 ~g~~fg~m~~sg~~~a~~~~ 321 (326)
T 2gjc_A 302 MGPTFGAMALSGVHAAEQIL 321 (326)
T ss_dssp CCSCCHHHHHHHHHHHHHHH
T ss_pred CChhhhhhhhhhHHHHHHHH
Confidence 11222223456777777665
No 283
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=97.87 E-value=2.3e-05 Score=80.09 Aligned_cols=98 Identities=20% Similarity=0.127 Sum_probs=71.5
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||+.|+..|..|++.|.+ |+++++.+... +.+. ........+.+++
T Consensus 187 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l-------------------~~~d----~~~~~~~~~~l~~ 240 (478)
T 3dk9_A 187 PGRSVIVGAGYIAVEMAGILSALGSK---TSLMIRHDKVL-------------------RSFD----SMISTNCTEELEN 240 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSC-------------------TTSC----HHHHHHHHHHHHH
T ss_pred CccEEEECCCHHHHHHHHHHHHcCCe---EEEEEeCCccc-------------------cccC----HHHHHHHHHHHHH
Confidence 36899999999999999999998876 99998875310 0000 0111234566788
Q ss_pred cCcEEEeCceEEEEECCC-c---EEEeCC-------CcEEEeceEEeecCCCccc
Q 011700 84 HGIELVLGTRVKSADVRR-K---TLVTAT-------GETISYKILIIATGARALK 127 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~-~---~v~~~~-------g~~~~~d~lviAtG~~~~~ 127 (479)
.||+++.++.+.+++.+. . .+.+.+ ++++.+|.||+|+|.+|..
T Consensus 241 ~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~ 295 (478)
T 3dk9_A 241 AGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNT 295 (478)
T ss_dssp TTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESC
T ss_pred CCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCC
Confidence 999999999999987542 2 344543 2578999999999988765
No 284
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=97.86 E-value=4.9e-05 Score=79.36 Aligned_cols=100 Identities=19% Similarity=0.271 Sum_probs=76.9
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc-------------------------------------ccc-----
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC-------------------------------------MAR----- 200 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~-------------------------------------l~~----- 200 (479)
-.|+|||+|+.|+-+|..|++.|.+|+++++.+.. +..
T Consensus 50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 129 (570)
T 3fmw_A 50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFTQG 129 (570)
T ss_dssp -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCTTC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCccccc
Confidence 47999999999999999999999999999975321 000
Q ss_pred --------------cC-CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe--CCC-cEEeccEEEEecCCCC
Q 011700 201 --------------LF-TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL--RDG-NRLPTDMVVVGIGIRP 262 (479)
Q Consensus 201 --------------~~-~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~--~~g-~~i~~D~Vi~a~G~~p 262 (479)
.+ ...+.+.+.+.+++.|++++.+++|++++.++++. .+.+ .+| +++.+|.||.|.|...
T Consensus 130 ~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v--~v~~~~~~G~~~~~a~~vV~ADG~~S 207 (570)
T 3fmw_A 130 LDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAV--EVTVAGPSGPYPVRARYGVGCDGGRS 207 (570)
T ss_dssp CBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCE--EEEEEETTEEEEEEESEEEECSCSSC
T ss_pred ccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeE--EEEEEeCCCcEEEEeCEEEEcCCCCc
Confidence 01 13456677777888899999999999998754443 3555 778 7899999999999876
Q ss_pred Ch
Q 011700 263 NT 264 (479)
Q Consensus 263 ~~ 264 (479)
..
T Consensus 208 ~v 209 (570)
T 3fmw_A 208 TV 209 (570)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 285
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=97.86 E-value=2.7e-05 Score=79.85 Aligned_cols=98 Identities=15% Similarity=0.134 Sum_probs=70.2
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||+.|+..|..|++.|.+ |+++++....+ .+. ........+.+++
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~l~--------------------~~d----~~~~~~l~~~l~~ 237 (488)
T 3dgz_A 185 PGKTLVVGASYVALECAGFLTGIGLD---TTVMMRSIPLR--------------------GFD----QQMSSLVTEHMES 237 (488)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCSST--------------------TSC----HHHHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---eEEEEcCcccc--------------------cCC----HHHHHHHHHHHHH
Confidence 35799999999999999999999876 99998763210 000 0111334566788
Q ss_pred cCcEEEeCceEEEEECC-C--cEEEeCC---Cc--EEEeceEEeecCCCcccc
Q 011700 84 HGIELVLGTRVKSADVR-R--KTLVTAT---GE--TISYKILIIATGARALKL 128 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~-~--~~v~~~~---g~--~~~~d~lviAtG~~~~~~ 128 (479)
.||+++.++.+.++... + ..+.+.+ ++ ++.+|.||+|+|.+|...
T Consensus 238 ~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~ 290 (488)
T 3dgz_A 238 HGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETR 290 (488)
T ss_dssp TTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESCG
T ss_pred CCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcccC
Confidence 99999999888888652 2 2344433 44 478999999999887653
No 286
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=97.85 E-value=0.00012 Score=78.14 Aligned_cols=54 Identities=15% Similarity=0.184 Sum_probs=42.9
Q ss_pred HHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700 207 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 262 (479)
Q Consensus 207 ~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p 262 (479)
.+.+.+.+++.|++++++++|++++.+ ++.+ .|.+.+|.++.+|.||+|+|...
T Consensus 420 ~~aL~~~a~~~Gv~i~~~t~V~~l~~~-~~~v-~V~t~~G~~i~Ad~VVlAtG~~s 473 (676)
T 3ps9_A 420 TRNVLELAQQQGLQIYYQYQLQNFSRK-DDCW-LLNFAGDQQATHSVVVLANGHQI 473 (676)
T ss_dssp HHHHHHHHHHTTCEEEESCCEEEEEEE-TTEE-EEEETTSCEEEESEEEECCGGGG
T ss_pred HHHHHHHHHhCCCEEEeCCeeeEEEEe-CCeE-EEEECCCCEEECCEEEECCCcch
Confidence 344556667789999999999999874 4443 68888888899999999999753
No 287
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=97.82 E-value=8.7e-05 Score=76.95 Aligned_cols=101 Identities=21% Similarity=0.207 Sum_probs=76.8
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc--------------------------------------------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------------------------------------------- 198 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------------------- 198 (479)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+...
T Consensus 6 ~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 85 (535)
T 3ihg_A 6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIRLAE 85 (535)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEEEES
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeeeEEe
Confidence 479999999999999999999999999999864210
Q ss_pred -------c----c-----------------cCC-HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCc--EEEEEeCCC-
Q 011700 199 -------A----R-----------------LFT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGK--VVAVNLRDG- 246 (479)
Q Consensus 199 -------~----~-----------------~~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~--v~~v~~~~g- 246 (479)
. . .++ ..+.+.+.+.+++.|+++++++++++++.++++. -..+.+.++
T Consensus 86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~ 165 (535)
T 3ihg_A 86 SVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPD 165 (535)
T ss_dssp SSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETT
T ss_pred ccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCC
Confidence 0 0 001 2455667777888899999999999998754411 234556565
Q ss_pred --cEEeccEEEEecCCCCC
Q 011700 247 --NRLPTDMVVVGIGIRPN 263 (479)
Q Consensus 247 --~~i~~D~Vi~a~G~~p~ 263 (479)
.++.+|.||.|.|....
T Consensus 166 ~~~~i~a~~vV~AdG~~S~ 184 (535)
T 3ihg_A 166 GEYDLRAGYLVGADGNRSL 184 (535)
T ss_dssp EEEEEEEEEEEECCCTTCH
T ss_pred CeEEEEeCEEEECCCCcch
Confidence 68999999999998764
No 288
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=97.79 E-value=1.7e-05 Score=77.92 Aligned_cols=37 Identities=24% Similarity=0.386 Sum_probs=33.3
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
|++++||+|||||++|+++|++|+++|.+ |+|+|+..
T Consensus 3 m~~~~dVvVIG~Gi~Gls~A~~La~~G~~---V~vle~~~ 39 (363)
T 1c0p_A 3 MHSQKRVVVLGSGVIGLSSALILARKGYS---VHILARDL 39 (363)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSC
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHhCCCE---EEEEeccC
Confidence 34578999999999999999999999876 99999985
No 289
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=97.78 E-value=0.00022 Score=73.98 Aligned_cols=56 Identities=16% Similarity=0.335 Sum_probs=45.4
Q ss_pred HHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700 208 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 264 (479)
Q Consensus 208 ~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~ 264 (479)
+.+.+.+++.|++++.+ +|++++.++++.+..|.+.+|+++.+|.||.|+|.....
T Consensus 169 ~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~~ 224 (538)
T 2aqj_A 169 DFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGLL 224 (538)
T ss_dssp HHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCCC
T ss_pred HHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchhh
Confidence 44556667789999999 899998755666667888888899999999999986654
No 290
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=97.74 E-value=0.00022 Score=68.95 Aligned_cols=166 Identities=14% Similarity=0.107 Sum_probs=101.3
Q ss_pred CCCEEEECCChHHHHHHHHHhhC--CCeEEEEeecCccccc-------------------------------------cC
Q 011700 162 GGNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMAR-------------------------------------LF 202 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~l~~-------------------------------------~~ 202 (479)
.-.|+|||+|+.|+.+|..|++. |.+|+++++.+.+-.. ..
T Consensus 79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~~ 158 (344)
T 3jsk_A 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKH 158 (344)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCeEEEec
Confidence 35799999999999999999997 9999999987532100 00
Q ss_pred CHHHHHHHHHHHHh-CCcEEEcCCceEEEEEcCC----------------C--cEEEEEeC--------------CCcEE
Q 011700 203 TPKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSN----------------G--KVVAVNLR--------------DGNRL 249 (479)
Q Consensus 203 ~~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~----------------g--~v~~v~~~--------------~g~~i 249 (479)
..++.+.+.+.+++ .|++++.++.+.++..+++ + ++..+... +..++
T Consensus 159 ~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i 238 (344)
T 3jsk_A 159 AALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTI 238 (344)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEE
Confidence 23444566666666 5999999999999876432 3 56566542 22479
Q ss_pred eccEEEEecCCCCChh------hhhccccc-ccCc--EEEcC--c---ccC--CCCCeEEEeeeccccccccCceeeccc
Q 011700 250 PTDMVVVGIGIRPNTS------LFEGQLTL-EKGG--IKVTG--R---LQS--SNSSVYAVGDVAAFPLKLLGETRRLEH 313 (479)
Q Consensus 250 ~~D~Vi~a~G~~p~~~------l~~~~~~~-~~g~--i~Vd~--~---l~t--~~~~IyA~GD~~~~~~~~~g~~~~~~~ 313 (479)
.++.||.|+|...... +...++.. -.|. ..++. . ..| -+|++|++|=.+.-. .|.++.=+.
T Consensus 239 ~Ak~VV~ATG~~s~v~~~~~~~l~~~~~~~~~~g~~~~~~~~~e~~~v~~t~~v~~gl~~~gm~~~~~---~g~~rmgp~ 315 (344)
T 3jsk_A 239 NAPVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRGLDMQSAEDAIVNNTREIVPGLIVGGMELSEI---DGANRMGPT 315 (344)
T ss_dssp ECSEEEECCCSSSSSSCHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHTCEEEETTEEECGGGHHHH---HTCEECCSC
T ss_pred EcCEEEECCCCCchhhHHHHHHHhhcCcccccCCCcccccccchhhhcccCceEcCCEEEechhhHhh---cCCCCCCcc
Confidence 9999999999876521 11112211 0111 11110 0 012 379999999776532 122222122
Q ss_pred HHHHHHHHHHHHHHHcC
Q 011700 314 VDSARKSAKHAVAAIME 330 (479)
Q Consensus 314 ~~~A~~~g~~aa~~i~~ 330 (479)
..-=...|+.||+.|+.
T Consensus 316 fg~m~~sg~~~a~~~~~ 332 (344)
T 3jsk_A 316 FGAMALSGVKAAHEAIR 332 (344)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred cceeeecCHHHHHHHHH
Confidence 22234567777776653
No 291
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=97.74 E-value=2.5e-05 Score=79.32 Aligned_cols=60 Identities=12% Similarity=0.139 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcC-CCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700 203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDS-NGKVVAVNLRDGNRLPTDMVVVGIGIRPN 263 (479)
Q Consensus 203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~-~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~ 263 (479)
...+.+.+.+.+++.|++++++++|++|..+. ++++..|.+ +|+++.||.||+++|..|.
T Consensus 241 ~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~ 301 (453)
T 2bcg_G 241 LGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFPE 301 (453)
T ss_dssp TTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCGG
T ss_pred HHHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccch
Confidence 35788888888999999999999999998732 566666776 5788999999999997653
No 292
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=97.74 E-value=0.0001 Score=75.07 Aligned_cols=97 Identities=23% Similarity=0.259 Sum_probs=70.2
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc------------------------------cCCH-H-------
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------LFTP-K------- 205 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------~~~~-~------- 205 (479)
.++|||+|+.|+.+|..|++.|.+|+++++.+.+-.. .++. .
T Consensus 6 DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (466)
T 3l8k_A 6 DVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQDRKDY 85 (466)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHHHHHH
T ss_pred eEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHHHHHh
Confidence 6999999999999999999999999999966543110 0110 0
Q ss_pred ---HH--HHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcE--EeccEEEEecCCCCChh
Q 011700 206 ---IA--SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 206 ---~~--~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~--i~~D~Vi~a~G~~p~~~ 265 (479)
+. ..+.+.+++.||+++.+ .+..++. . ...+...+|++ +.+|.+++|+|.+|...
T Consensus 86 ~~~l~~~~~~~~~~~~~~v~~~~g-~v~~id~---~-~~~V~~~~g~~~~~~~d~lviAtG~~p~~p 147 (466)
T 3l8k_A 86 VQELRFKQHKRNMSQYETLTFYKG-YVKIKDP---T-HVIVKTDEGKEIEAETRYMIIASGAETAKL 147 (466)
T ss_dssp HHHHHHHHHHHHHTTCTTEEEESE-EEEEEET---T-EEEEEETTSCEEEEEEEEEEECCCEEECCC
T ss_pred heeccccchHHHHHHhCCCEEEEe-EEEEecC---C-eEEEEcCCCcEEEEecCEEEECCCCCccCC
Confidence 11 33445556789999987 4666642 2 24577788888 99999999999877653
No 293
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=97.71 E-value=2e-05 Score=81.18 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC
Q 011700 204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI 260 (479)
Q Consensus 204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~ 260 (479)
..+.+.+.+.+++.|++++++++|++|.. +++ .+.+.+|+++.+|.||.++..
T Consensus 222 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~-~~~---~v~~~~G~~~~ad~vI~t~P~ 274 (513)
T 4gde_A 222 GGIWIAVANTLPKEKTRFGEKGKVTKVNA-NNK---TVTLQDGTTIGYKKLVSTMAV 274 (513)
T ss_dssp HHHHHHHHHTSCGGGEEESGGGCEEEEET-TTT---EEEETTSCEEEEEEEEECSCH
T ss_pred HHHHHHHHHHHHhcCeeeecceEEEEEEc-cCC---EEEEcCCCEEECCEEEECCCH
Confidence 45677788888889999999999999986 333 356889999999999998763
No 294
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=97.71 E-value=0.00022 Score=73.42 Aligned_cols=64 Identities=19% Similarity=0.222 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC-c--EEecc-EEEEecCCCC-Chhhhh
Q 011700 205 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-N--RLPTD-MVVVGIGIRP-NTSLFE 268 (479)
Q Consensus 205 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g-~--~i~~D-~Vi~a~G~~p-~~~l~~ 268 (479)
.+.+.+.+.+++.||+++++++++++..++++++..|...++ + ++.+| .||+|+|--. |.++++
T Consensus 203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~~n~~m~~ 271 (510)
T 4at0_A 203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFAYNDKMIE 271 (510)
T ss_dssp HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChhhCHHHHH
Confidence 455666677778899999999999999854688877776543 2 58996 9999999655 444443
No 295
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=97.71 E-value=6.8e-05 Score=77.45 Aligned_cols=97 Identities=15% Similarity=0.164 Sum_probs=66.7
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH 84 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (479)
.+++|||||+.|+..|..|+++|.+ |+++++....+ .+. ........+.+++.
T Consensus 211 ~~vvVIGgG~ig~E~A~~l~~~G~~---Vtlv~~~~~l~--------------------~~d----~~~~~~~~~~l~~~ 263 (519)
T 3qfa_A 211 GKTLVVGASYVALECAGFLAGIGLD---VTVMVRSILLR--------------------GFD----QDMANKIGEHMEEH 263 (519)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCSST--------------------TSC----HHHHHHHHHHHHHT
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCe---EEEEecccccc--------------------cCC----HHHHHHHHHHHHHC
Confidence 5799999999999999999999876 99998752110 000 01113345667889
Q ss_pred CcEEEeCceEEEEECCC----c--EEE--eCCC---cEEEeceEEeecCCCcccc
Q 011700 85 GIELVLGTRVKSADVRR----K--TLV--TATG---ETISYKILIIATGARALKL 128 (479)
Q Consensus 85 gv~~~~~~~v~~i~~~~----~--~v~--~~~g---~~~~~d~lviAtG~~~~~~ 128 (479)
||+++.++.+..+.... . .+. ..++ .++.+|.|++|+|.+|...
T Consensus 264 GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~ 318 (519)
T 3qfa_A 264 GIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTR 318 (519)
T ss_dssp TCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCS
T ss_pred CCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCC
Confidence 99999997766664321 2 232 2344 2578999999999887643
No 296
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=97.69 E-value=4.2e-05 Score=78.46 Aligned_cols=100 Identities=17% Similarity=0.174 Sum_probs=71.0
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc-------c--C---CHHHHHHHHHHHHhCCcEEEcCCceEEE
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-------L--F---TPKIASYYEEYYKSKGVKFVKGTVLSSF 230 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-------~--~---~~~~~~~~~~~l~~~GV~i~~~~~v~~i 230 (479)
.+++|||+|+.|+.+|..|++. .+|+++++.+.+-.. . + ..++.+.+.+.+ +.+++++.++.+.++
T Consensus 109 ~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v~~i 186 (493)
T 1y56_A 109 VDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSALGV 186 (493)
T ss_dssp ESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEECCC
T ss_pred CCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEEEEE
Confidence 5799999999999999999999 999999987654110 0 1 123333334444 669999999999888
Q ss_pred EEcCCCcEEEEEeCCCc--EEeccEEEEecCCCCChh
Q 011700 231 DVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 231 ~~~~~g~v~~v~~~~g~--~i~~D~Vi~a~G~~p~~~ 265 (479)
... +..+......+++ ++.+|.+++|+|..|...
T Consensus 187 ~~~-~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~ 222 (493)
T 1y56_A 187 FDK-GEYFLVPVVRGDKLIEILAKRVVLATGAIDSTM 222 (493)
T ss_dssp EEC-SSSEEEEEEETTEEEEEEESCEEECCCEEECCC
T ss_pred EcC-CcEEEEEEecCCeEEEEECCEEEECCCCCccCC
Confidence 763 3333222224454 689999999999877643
No 297
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=97.68 E-value=0.00026 Score=72.62 Aligned_cols=101 Identities=20% Similarity=0.317 Sum_probs=77.7
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc----------------------c-------------------
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA----------------------R------------------- 200 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~----------------------~------------------- 200 (479)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.. .
T Consensus 12 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~ 91 (499)
T 2qa2_A 12 DASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPVDF 91 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEEEG
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceeccc
Confidence 45799999999999999999999999999997532100 0
Q ss_pred -----cC-------CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCc---EEeccEEEEecCCCCCh
Q 011700 201 -----LF-------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN---RLPTDMVVVGIGIRPNT 264 (479)
Q Consensus 201 -----~~-------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~---~i~~D~Vi~a~G~~p~~ 264 (479)
.. ...+.+.+.+.+++.|++++.++++++++.++++ + .+.+.+++ ++.+|.||.|.|.....
T Consensus 92 ~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~~~g~~~~~a~~vVgADG~~S~V 168 (499)
T 2qa2_A 92 GVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDH-V-VVEVEGPDGPRSLTTRYVVGCDGGRSTV 168 (499)
T ss_dssp GGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSC-E-EEEEECSSCEEEEEEEEEEECCCTTCHH
T ss_pred ccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCE-E-EEEEEcCCCcEEEEeCEEEEccCcccHH
Confidence 00 1345666777788889999999999999885444 3 46666664 79999999999987643
No 298
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}
Probab=97.67 E-value=3.5e-05 Score=76.87 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=33.9
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHc-CCCCCcEEEEcCCCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKR-GVPPGELCIISEEPV 41 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~-g~~~~~V~lie~~~~ 41 (479)
|++++||+|||||++|++||..|++. |++ |+|+|+++.
T Consensus 4 m~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~---v~v~E~~~~ 42 (399)
T 1v0j_A 4 MTARFDLFVVGSGFFGLTIAERVATQLDKR---VLVLERRPH 42 (399)
T ss_dssp CCCSCSEEEECCSHHHHHHHHHHHHHSCCC---EEEECSSSS
T ss_pred ccccCCEEEECCCHHHHHHHHHHHHhCCCC---EEEEeCCCC
Confidence 44578999999999999999999998 876 999999865
No 299
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Probab=97.65 E-value=0.0004 Score=71.24 Aligned_cols=101 Identities=21% Similarity=0.280 Sum_probs=77.1
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc----------------------cc------------------
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA----------------------RL------------------ 201 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~----------------------~~------------------ 201 (479)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.. ..
T Consensus 11 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~ 90 (500)
T 2qa1_A 11 DAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLPIDF 90 (500)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEEEEG
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccceeccc
Confidence 46799999999999999999999999999997632100 00
Q ss_pred ------------C-CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCc---EEeccEEEEecCCCCCh
Q 011700 202 ------------F-TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN---RLPTDMVVVGIGIRPNT 264 (479)
Q Consensus 202 ------------~-~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~---~i~~D~Vi~a~G~~p~~ 264 (479)
+ -..+.+.+.+.+++.|++++.++++++++.+++ .+ .+.+.+++ ++.+|.||.|.|.....
T Consensus 91 ~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~v-~v~~~~~~g~~~~~a~~vVgADG~~S~V 167 (500)
T 2qa1_A 91 GVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGA-GV-TVEVRGPEGKHTLRAAYLVGCDGGRSSV 167 (500)
T ss_dssp GGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETT-EE-EEEEEETTEEEEEEESEEEECCCTTCHH
T ss_pred ccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCC-eE-EEEEEcCCCCEEEEeCEEEECCCcchHH
Confidence 0 024556677777888999999999999987444 33 46666664 79999999999987643
No 300
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=97.64 E-value=0.00014 Score=72.51 Aligned_cols=101 Identities=18% Similarity=0.200 Sum_probs=74.3
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCe-EEEEeecCcccccc---------------------------------------
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAHCMARL--------------------------------------- 201 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~-Vtlv~~~~~~l~~~--------------------------------------- 201 (479)
..+|+|||+|+.|+-+|..|++.|.+ |+++++.+.+.+..
T Consensus 4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~g 83 (410)
T 3c96_A 4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSG 83 (410)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEcCCC
Confidence 35799999999999999999999999 99999865421000
Q ss_pred -------------C--------CHHHHHHHHHHHHh-CC-cEEEcCCceEEEEEcCCCcEEEEEeCC---C--cEEeccE
Q 011700 202 -------------F--------TPKIASYYEEYYKS-KG-VKFVKGTVLSSFDVDSNGKVVAVNLRD---G--NRLPTDM 253 (479)
Q Consensus 202 -------------~--------~~~~~~~~~~~l~~-~G-V~i~~~~~v~~i~~~~~g~v~~v~~~~---g--~~i~~D~ 253 (479)
+ ..++.+.+.+.+++ .| ++++.++++++++. +++ + .+.+.+ | +++.+|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~-v-~v~~~~~~~g~~~~~~ad~ 160 (410)
T 3c96_A 84 ATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDG-R-VLIGARDGHGKPQALGADV 160 (410)
T ss_dssp CEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETT-E-EEEEEEETTSCEEEEEESE
T ss_pred CEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCc-c-EEEEecCCCCCceEEecCE
Confidence 0 01344556666655 35 68999999999987 454 3 355544 6 5799999
Q ss_pred EEEecCCCCChh
Q 011700 254 VVVGIGIRPNTS 265 (479)
Q Consensus 254 Vi~a~G~~p~~~ 265 (479)
||.|.|......
T Consensus 161 vV~AdG~~S~vR 172 (410)
T 3c96_A 161 LVGADGIHSAVR 172 (410)
T ss_dssp EEECCCTTCHHH
T ss_pred EEECCCccchhH
Confidence 999999877653
No 301
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=97.64 E-value=4.3e-05 Score=76.62 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=33.3
Q ss_pred CCcCeEEEECCchHHHHHHHHHHHcC-CCCCcEEEEcCCCC
Q 011700 2 GRAFVYVIVGGGVAAGYAALEFTKRG-VPPGELCIISEEPV 41 (479)
Q Consensus 2 ~~~~dvvIIGgG~aGl~aA~~l~~~g-~~~~~V~lie~~~~ 41 (479)
++++||+|||||++||+||..|++.| .+ |+|+|+++.
T Consensus 4 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~~---v~v~E~~~~ 41 (424)
T 2b9w_A 4 SKDSRIAIIGAGPAGLAAGMYLEQAGFHD---YTILERTDH 41 (424)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHTTCCC---EEEECSSSC
T ss_pred CCCCCEEEECcCHHHHHHHHHHHhCCCCc---EEEEECCCC
Confidence 35789999999999999999999998 66 999999865
No 302
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=97.63 E-value=1.6e-05 Score=80.79 Aligned_cols=90 Identities=14% Similarity=0.177 Sum_probs=69.1
Q ss_pred CCCEEEECCChHHHHHHHHHhhCC--CeEEEEeecCccc--------ccc-CCHHHHHHHHHHHHhCCcEEEcCCceEEE
Q 011700 162 GGNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCM--------ARL-FTPKIASYYEEYYKSKGVKFVKGTVLSSF 230 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~~-~~~~~~~~~~~~l~~~GV~i~~~~~v~~i 230 (479)
+++++|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +.. ...++...+.+.+++.||+++.++.+.
T Consensus 6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~-- 83 (460)
T 1cjc_A 6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVG-- 83 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBT--
T ss_pred CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEEe--
Confidence 678999999999999999999988 9999999987654 210 123566677788889999999987652
Q ss_pred EEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700 231 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 262 (479)
Q Consensus 231 ~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p 262 (479)
. .+.+.+ .++.+|.||+|||..|
T Consensus 84 ---~-----~V~~~~-~~~~~d~lVlAtGs~~ 106 (460)
T 1cjc_A 84 ---R-----DVTVQE-LQDAYHAVVLSYGAED 106 (460)
T ss_dssp ---T-----TBCHHH-HHHHSSEEEECCCCCE
T ss_pred ---e-----EEEecc-ceEEcCEEEEecCcCC
Confidence 1 122333 3478999999999885
No 303
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=97.62 E-value=0.00013 Score=76.77 Aligned_cols=97 Identities=11% Similarity=0.150 Sum_probs=66.9
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
..+++|||||+.|+.+|..|+++|.+ |+++++....+ .+. ........+.+++
T Consensus 286 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~l~--------------------~~d----~~~~~~~~~~l~~ 338 (598)
T 2x8g_A 286 PGKTLVIGASYVALECAGFLASLGGD---VTVMVRSILLR--------------------GFD----QQMAEKVGDYMEN 338 (598)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCSST--------------------TSC----HHHHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCE---EEEEECCcCcC--------------------cCC----HHHHHHHHHHHHh
Confidence 35799999999999999999999876 99998762100 000 0011233456778
Q ss_pred cCcEEEeCceEEEEEC------CC---cE--EE--eCCCcEEE--eceEEeecCCCccc
Q 011700 84 HGIELVLGTRVKSADV------RR---KT--LV--TATGETIS--YKILIIATGARALK 127 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~------~~---~~--v~--~~~g~~~~--~d~lviAtG~~~~~ 127 (479)
.||+++.++.+..+.. +. .. +. ..+|+++. +|.||+|+|.+|..
T Consensus 339 ~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~ 397 (598)
T 2x8g_A 339 HGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQL 397 (598)
T ss_dssp TTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECG
T ss_pred CCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCcccc
Confidence 8999999987776632 11 22 22 34666554 99999999998864
No 304
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=97.60 E-value=8.5e-05 Score=79.49 Aligned_cols=97 Identities=12% Similarity=0.073 Sum_probs=71.6
Q ss_pred CeEEEEC--CchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700 5 FVYVIVG--GGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN 82 (479)
Q Consensus 5 ~dvvIIG--gG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (479)
.+++||| +|+.|+.+|..|++.|.+ |+++++.+... ..... + .....+.+.++
T Consensus 524 ~~VvViG~ggG~~g~e~A~~L~~~g~~---Vtlv~~~~~l~-------~~~~~-------~--------~~~~~l~~~l~ 578 (690)
T 3k30_A 524 KKVVVYDDDHYYLGGVVAELLAQKGYE---VSIVTPGAQVS-------SWTNN-------T--------FEVNRIQRRLI 578 (690)
T ss_dssp SEEEEEECSCSSHHHHHHHHHHHTTCE---EEEEESSSSTT-------GGGGG-------G--------TCHHHHHHHHH
T ss_pred CEEEEEcCCCCccHHHHHHHHHhCCCe---eEEEecccccc-------ccccc-------c--------hhHHHHHHHHH
Confidence 5799999 999999999999998876 99998875311 00000 0 00123456678
Q ss_pred HcCcEEEeCceEEEEECCCcEEEe---CCCcEEEeceEEeecCCCcc
Q 011700 83 EHGIELVLGTRVKSADVRRKTLVT---ATGETISYKILIIATGARAL 126 (479)
Q Consensus 83 ~~gv~~~~~~~v~~i~~~~~~v~~---~~g~~~~~d~lviAtG~~~~ 126 (479)
+.||+++.+++|.+++.++..+.. .+++++.+|.||+|+|.+|.
T Consensus 579 ~~GV~i~~~~~V~~i~~~~~~v~~~~~~~~~~i~aD~VV~A~G~~p~ 625 (690)
T 3k30_A 579 ENGVARVTDHAVVAVGAGGVTVRDTYASIERELECDAVVMVTARLPR 625 (690)
T ss_dssp HTTCEEEESEEEEEEETTEEEEEETTTCCEEEEECSEEEEESCEEEC
T ss_pred HCCCEEEcCcEEEEEECCeEEEEEccCCeEEEEECCEEEECCCCCCC
Confidence 899999999999999877655553 24568999999999998875
No 305
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=97.59 E-value=4e-05 Score=78.16 Aligned_cols=55 Identities=22% Similarity=0.365 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC
Q 011700 204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI 260 (479)
Q Consensus 204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~ 260 (479)
..+.+.+.+.+++.|++++++++|++|+.++++ ...|.+ ++.++.+|.||++++.
T Consensus 234 ~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~-~~~v~~-~~~~~~ad~vv~a~p~ 288 (477)
T 3nks_A 234 EMLPQALETHLTSRGVSVLRGQPVCGLSLQAEG-RWKVSL-RDSSLEADHVISAIPA 288 (477)
T ss_dssp THHHHHHHHHHHHTTCEEECSCCCCEEEECGGG-CEEEEC-SSCEEEESEEEECSCH
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCc-eEEEEE-CCeEEEcCEEEECCCH
Confidence 357778888899999999999999999874333 235655 5568999999999874
No 306
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=97.59 E-value=9.9e-05 Score=73.66 Aligned_cols=54 Identities=15% Similarity=0.191 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCCcEEEcCCceE---------EEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700 206 IASYYEEYYKSKGVKFVKGTVLS---------SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 262 (479)
Q Consensus 206 ~~~~~~~~l~~~GV~i~~~~~v~---------~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p 262 (479)
+.+.+.+.+++.|++++.+++|+ +++. +++.+ .+.+.++ ++.+|.||+|+|...
T Consensus 174 l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~-~~~~v-~v~~~~g-~i~a~~VV~A~G~~s 236 (405)
T 3c4n_A 174 LALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTV-TNTHQ-IVVHETR-QIRAGVIIVAAGAAG 236 (405)
T ss_dssp HHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC---------CBCCE-EEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEeccccccccceEe-eCCeE-EEEECCc-EEECCEEEECCCccH
Confidence 45566777788999999999998 7765 23444 5666666 899999999999764
No 307
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=97.58 E-value=2.9e-05 Score=86.75 Aligned_cols=94 Identities=21% Similarity=0.346 Sum_probs=71.6
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCC-eEEEEeecCccc-------cc-cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEE
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 232 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~ 232 (479)
+++|+|||+|+.|+.+|..|++.|. +|+++++.+.+. +. .++.+..+...+.+++.||+++.++.+..
T Consensus 187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~ip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~--- 263 (1025)
T 1gte_A 187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSE--- 263 (1025)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBST---
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccccccCCcccCCHHHHHHHHHHHHHCCcEEEcccEecc---
Confidence 4689999999999999999999999 799999876532 11 13556666677888999999999986531
Q ss_pred cCCCcEEEEEeCCCcEEeccEEEEecCC-CCCh
Q 011700 233 DSNGKVVAVNLRDGNRLPTDMVVVGIGI-RPNT 264 (479)
Q Consensus 233 ~~~g~v~~v~~~~g~~i~~D~Vi~a~G~-~p~~ 264 (479)
. .+.+.+++++.+|.|++|||. +|..
T Consensus 264 ---~---~v~~~~~~~~~~d~vvlAtGa~~p~~ 290 (1025)
T 1gte_A 264 ---N---EITLNTLKEEGYKAAFIGIGLPEPKT 290 (1025)
T ss_dssp ---T---SBCHHHHHHTTCCEEEECCCCCEECC
T ss_pred ---c---eEEhhhcCccCCCEEEEecCCCCCCC
Confidence 1 133444556789999999998 4654
No 308
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}
Probab=97.57 E-value=4.4e-05 Score=76.90 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=31.3
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
+||+||||||+|+++|..|+++|++ |+|||+.+
T Consensus 23 ~~ViIVGaGpaGl~~A~~La~~G~~---V~viE~~~ 55 (430)
T 3ihm_A 23 KRIGIVGAGTAGLHLGLFLRQHDVD---VTVYTDRK 55 (430)
T ss_dssp CEEEEECCHHHHHHHHHHHHHTTCE---EEEEESCC
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCe---EEEEcCCC
Confidence 7999999999999999999999987 99999986
No 309
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=97.57 E-value=0.00033 Score=76.58 Aligned_cols=55 Identities=27% Similarity=0.432 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700 206 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 262 (479)
Q Consensus 206 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p 262 (479)
+.+.+.+.+++.|++++.+++|++++. +++.+..|.+.+| ++.+|.||+|+|...
T Consensus 153 l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s 207 (830)
T 1pj5_A 153 AVQLLIKRTESAGVTYRGSTTVTGIEQ-SGGRVTGVQTADG-VIPADIVVSCAGFWG 207 (830)
T ss_dssp HHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred HHHHHHHHHHHcCCEEECCceEEEEEE-eCCEEEEEEECCc-EEECCEEEECCccch
Confidence 344556677788999999999999987 4566666777777 799999999999764
No 310
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=97.55 E-value=0.0002 Score=79.47 Aligned_cols=100 Identities=13% Similarity=0.119 Sum_probs=71.5
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccccc-------C----CHHHHHHHHHHHHhC-CcEEEcCCceEEE
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-------F----TPKIASYYEEYYKSK-GVKFVKGTVLSSF 230 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-------~----~~~~~~~~~~~l~~~-GV~i~~~~~v~~i 230 (479)
.+++|||+|+.|+.+|..+++.|.+|+++++.+.+-... + ..++...+.+.+.+. +|+++.++.+.++
T Consensus 129 ~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~V~~i 208 (965)
T 2gag_A 129 TDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTTVFGS 208 (965)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEEEEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCEEEee
Confidence 579999999999999999999999999999876532110 1 234445555666664 9999999988888
Q ss_pred EEcCCCcEEEEEe---------------CCCcEEeccEEEEecCCCCCh
Q 011700 231 DVDSNGKVVAVNL---------------RDGNRLPTDMVVVGIGIRPNT 264 (479)
Q Consensus 231 ~~~~~g~v~~v~~---------------~~g~~i~~D~Vi~a~G~~p~~ 264 (479)
.. ++.+..+.. .++.++.+|.+|+|||.+|..
T Consensus 209 ~~--~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~ 255 (965)
T 2gag_A 209 YD--ANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERP 255 (965)
T ss_dssp ET--TTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECC
T ss_pred ec--CCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCC
Confidence 63 333222221 112368999999999987654
No 311
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=97.55 E-value=0.00067 Score=67.21 Aligned_cols=51 Identities=18% Similarity=0.214 Sum_probs=38.8
Q ss_pred HHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700 209 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 262 (479)
Q Consensus 209 ~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p 262 (479)
.+.+.+++.|++++.+++|++++.+ ++.+ .+.+.++ ++.+|.||+|+|...
T Consensus 158 ~l~~~a~~~Gv~i~~~~~V~~i~~~-~~~v-~v~t~~g-~i~a~~VV~A~G~~s 208 (397)
T 2oln_A 158 ALFTLAQAAGATLRAGETVTELVPD-ADGV-SVTTDRG-TYRAGKVVLACGPYT 208 (397)
T ss_dssp HHHHHHHHTTCEEEESCCEEEEEEE-TTEE-EEEESSC-EEEEEEEEECCGGGH
T ss_pred HHHHHHHHcCCEEECCCEEEEEEEc-CCeE-EEEECCC-EEEcCEEEEcCCcCh
Confidence 4455566789999999999999874 3333 4666555 799999999999753
No 312
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=97.52 E-value=0.00018 Score=76.80 Aligned_cols=47 Identities=15% Similarity=0.280 Sum_probs=37.7
Q ss_pred HhHHHHcCcEEEeCceEEEEECCCcEEEe-CCC--cEEEeceEEeecCCCcc
Q 011700 78 PKWYNEHGIELVLGTRVKSADVRRKTLVT-ATG--ETISYKILIIATGARAL 126 (479)
Q Consensus 78 ~~~~~~~gv~~~~~~~v~~i~~~~~~v~~-~~g--~~~~~d~lviAtG~~~~ 126 (479)
.+.+++.||+++.++.+.+++.+. +.+ .+| +++.+|.||+|+|.+|.
T Consensus 580 ~~~l~~~GV~v~~~~~v~~i~~~~--v~~~~~G~~~~i~~D~Vi~a~G~~p~ 629 (671)
T 1ps9_A 580 RTTLLSRGVKMIPGVSYQKIDDDG--LHVVINGETQVLAVDNVVICAGQEPN 629 (671)
T ss_dssp HHHHHHTTCEEECSCEEEEEETTE--EEEEETTEEEEECCSEEEECCCEEEC
T ss_pred HHHHHhcCCEEEeCcEEEEEeCCe--EEEecCCeEEEEeCCEEEECCCcccc
Confidence 456778999999999999998643 333 566 57999999999998874
No 313
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}
Probab=97.50 E-value=0.00048 Score=71.17 Aligned_cols=56 Identities=11% Similarity=0.207 Sum_probs=44.2
Q ss_pred HHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700 208 SYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 264 (479)
Q Consensus 208 ~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~ 264 (479)
+.+.+.+++ .|++++.+ +|++++.++++.+..+.+.+|+++.+|.||.|+|.....
T Consensus 179 ~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~~ 235 (526)
T 2pyx_A 179 QLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSLL 235 (526)
T ss_dssp HHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCCC
T ss_pred HHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchHH
Confidence 344555666 89999999 599998755666667888888789999999999987654
No 314
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=97.50 E-value=3.1e-05 Score=78.56 Aligned_cols=89 Identities=18% Similarity=0.170 Sum_probs=67.9
Q ss_pred CCCEEEECCChHHHHHHHHHhh-C------CCeEEEEeecCcccc--------c-cCCHHHHHHHHHHHHhCCcEEEcCC
Q 011700 162 GGNAVVIGGGYIGMECAASLVI-N------KINVTMVFPEAHCMA--------R-LFTPKIASYYEEYYKSKGVKFVKGT 225 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~-~------g~~Vtlv~~~~~~l~--------~-~~~~~~~~~~~~~l~~~GV~i~~~~ 225 (479)
+++++|||+|+.|+.+|..|.+ . +.+|+++++.+.+.. . ....++...+.+.+++.||+++.+.
T Consensus 3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~~v 82 (456)
T 1lqt_A 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV 82 (456)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCCEEEeeE
Confidence 5689999999999999999999 7 999999999876432 1 1124566777788888999999885
Q ss_pred ceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCC
Q 011700 226 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR 261 (479)
Q Consensus 226 ~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~ 261 (479)
.+ + . .+.+.++ ++.+|.||+|+|..
T Consensus 83 ~v------~-~---~v~~~~~-~~~~d~lViAtG~~ 107 (456)
T 1lqt_A 83 VV------G-E---HVQPGEL-SERYDAVIYAVGAQ 107 (456)
T ss_dssp CB------T-T---TBCHHHH-HHHSSEEEECCCCC
T ss_pred EE------C-C---EEEECCC-eEeCCEEEEeeCCC
Confidence 43 1 1 1334444 57899999999996
No 315
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=97.50 E-value=6.6e-05 Score=75.99 Aligned_cols=36 Identities=25% Similarity=0.268 Sum_probs=32.9
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
.++||+|||||++||+||..|++.|++ |+|+|+++.
T Consensus 4 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~---v~v~E~~~~ 39 (453)
T 2yg5_A 4 LQRDVAIVGAGPSGLAAATALRKAGLS---VAVIEARDR 39 (453)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSS
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCc---EEEEECCCC
Confidence 468999999999999999999999887 999999864
No 316
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=97.49 E-value=0.00064 Score=69.90 Aligned_cols=57 Identities=25% Similarity=0.377 Sum_probs=45.8
Q ss_pred HHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700 207 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 264 (479)
Q Consensus 207 ~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~ 264 (479)
.+.+.+.+++.|++++.+ +|++++.++++.+..|.+.+|+++.+|.||.|.|.....
T Consensus 176 ~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~ 232 (511)
T 2weu_A 176 ARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGLL 232 (511)
T ss_dssp HHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCCC
T ss_pred HHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchHH
Confidence 344555666789999999 899998755676778888899899999999999986543
No 317
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=97.48 E-value=9.4e-05 Score=72.72 Aligned_cols=36 Identities=25% Similarity=0.277 Sum_probs=32.7
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCC-CC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEE-PV 41 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~ 41 (479)
+.+||+|||||++||+||..|.+.|++ |+|+|++ +.
T Consensus 43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~---V~VlE~~~~~ 79 (376)
T 2e1m_A 43 PPKRILIVGAGIAGLVAGDLLTRAGHD---VTILEANANR 79 (376)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHTSCE---EEEECSCSSC
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCc---EEEEeccccc
Confidence 468999999999999999999999876 9999998 54
No 318
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=97.47 E-value=8.7e-05 Score=75.94 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=32.9
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
+++||+|||||++||+||..|++.|.+ |+|+|+.+.
T Consensus 10 ~~~~v~IIGaG~aGl~aA~~L~~~g~~---v~v~E~~~~ 45 (489)
T 2jae_A 10 GSHSVVVLGGGPAGLCSAFELQKAGYK---VTVLEARTR 45 (489)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCC---EEEEeccCC
Confidence 468999999999999999999999876 999999875
No 319
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*
Probab=97.45 E-value=0.00011 Score=72.95 Aligned_cols=36 Identities=31% Similarity=0.557 Sum_probs=32.7
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
..+|++|||||++|+++|..|++.|.+ |+|+|+.+.
T Consensus 28 ~~~dv~IIGaG~aGl~aA~~l~~~g~~---v~v~E~~~~ 63 (397)
T 3hdq_A 28 KGFDYLIVGAGFAGSVLAERLASSGQR---VLIVDRRPH 63 (397)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSS
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCc---eEEEeccCC
Confidence 358999999999999999999998887 999999865
No 320
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=97.45 E-value=8e-05 Score=76.86 Aligned_cols=36 Identities=19% Similarity=0.257 Sum_probs=32.6
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcC-CCCCcEEEEcCCCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRG-VPPGELCIISEEPV 41 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g-~~~~~V~lie~~~~ 41 (479)
+++||+|||||++||+||..|++.| .+ |+|+|+.+.
T Consensus 7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~~---V~VlEa~~r 43 (516)
T 1rsg_A 7 AKKKVIIIGAGIAGLKAASTLHQNGIQD---CLVLEARDR 43 (516)
T ss_dssp EEEEEEEECCBHHHHHHHHHHHHTTCCS---EEEECSSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcCCCC---EEEEeCCCC
Confidence 3579999999999999999999998 76 999999875
No 321
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=97.44 E-value=8.3e-05 Score=76.39 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=32.5
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
|++.+||+|||||++||+||..|++.|++ |+|+|+.+.
T Consensus 10 ~~~~~~v~iiG~G~~Gl~aA~~l~~~g~~---v~v~E~~~~ 47 (504)
T 1sez_A 10 HSSAKRVAVIGAGVSGLAAAYKLKIHGLN---VTVFEAEGK 47 (504)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHTTSCE---EEEECSSSS
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHHCCCc---EEEEEeCCC
Confidence 44568999999999999999999999876 999999975
No 322
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=97.43 E-value=0.00081 Score=68.99 Aligned_cols=56 Identities=16% Similarity=0.102 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe---CCCc--EEeccEEEEecCCCCC
Q 011700 206 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGIRPN 263 (479)
Q Consensus 206 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~Vi~a~G~~p~ 263 (479)
+...+.+.+++.|++++.+++|++++.+ + .+..+.+ .+|+ ++.+|.||.|+|....
T Consensus 151 l~~~l~~~a~~~Gv~i~~~~~V~~l~~~-~-~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~ 211 (501)
T 2qcu_A 151 LVLANAQMVVRKGGEVLTRTRATSARRE-N-GLWIVEAEDIDTGKKYSWQARGLVNATGPWVK 211 (501)
T ss_dssp HHHHHHHHHHHTTCEEECSEEEEEEEEE-T-TEEEEEEEETTTCCEEEEEESCEEECCGGGHH
T ss_pred HHHHHHHHHHHcCCEEEcCcEEEEEEEe-C-CEEEEEEEECCCCCEEEEECCEEEECCChhHH
Confidence 4445666777889999999999999873 3 4556666 3565 7999999999997643
No 323
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=97.39 E-value=0.00064 Score=69.22 Aligned_cols=99 Identities=18% Similarity=0.283 Sum_probs=71.3
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc-------------cccc-----------------------------
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC-------------MARL----------------------------- 201 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~-------------l~~~----------------------------- 201 (479)
.|+|||+|..|+-+|..|++.|.+|+++++...- +...
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~~ 80 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKRIDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTSE 80 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHHH
Confidence 3899999999999999999999999999876100 0000
Q ss_pred --------------C----------------------CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC-
Q 011700 202 --------------F----------------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR- 244 (479)
Q Consensus 202 --------------~----------------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~- 244 (479)
+ ..++.+.+.+.+++.||+++.++.+ ++.. +++++..+...
T Consensus 81 ~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~-~~~~v~Gv~v~~ 158 (472)
T 2e5v_A 81 AKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIEDRLV-EIRV-KDGKVTGFVTEK 158 (472)
T ss_dssp HHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEECCCEE-EEEE-ETTEEEEEEETT
T ss_pred HHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEEEECcEE-EEEE-eCCEEEEEEEEe
Confidence 0 0133445556667789999999999 9876 35666556553
Q ss_pred CCcEEeccEEEEecCCCCCh
Q 011700 245 DGNRLPTDMVVVGIGIRPNT 264 (479)
Q Consensus 245 ~g~~i~~D~Vi~a~G~~p~~ 264 (479)
++.++.+|.||+|+|..+..
T Consensus 159 ~~g~~~a~~VVlAtGg~~~~ 178 (472)
T 2e5v_A 159 RGLVEDVDKLVLATGGYSYL 178 (472)
T ss_dssp TEEECCCSEEEECCCCCGGG
T ss_pred CCCeEEeeeEEECCCCCccc
Confidence 23357899999999976643
No 324
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=97.38 E-value=0.00011 Score=74.76 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=31.7
Q ss_pred cCeEEEECCchHHHHHHHHHHHcC--CCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRG--VPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g--~~~~~V~lie~~~~ 41 (479)
++||+|||||++|+++|.+|++.| .+ |+|+|+++.
T Consensus 4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~---v~v~E~~~~ 40 (475)
T 3lov_A 4 SKRLVIVGGGITGLAAAYYAERAFPDLN---ITLLEAGER 40 (475)
T ss_dssp SCEEEEECCBHHHHHHHHHHHHHCTTSE---EEEECSSSS
T ss_pred cccEEEECCCHHHHHHHHHHHHhCCCCC---EEEEECCCC
Confidence 589999999999999999999988 54 999999764
No 325
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A
Probab=97.36 E-value=0.00017 Score=72.72 Aligned_cols=59 Identities=15% Similarity=0.258 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700 203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 263 (479)
Q Consensus 203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~ 263 (479)
..++.+.+.+.+++.|++++++++|++|.. +++++..+. .+|+++.||.||+++|..+.
T Consensus 233 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~-~~~~v~~v~-~~g~~~~ad~VV~a~~~~~~ 291 (433)
T 1d5t_A 233 LGELPQGFARLSAIYGGTYMLNKPVDDIIM-ENGKVVGVK-SEGEVARCKQLICDPSYVPD 291 (433)
T ss_dssp TTHHHHHHHHHHHHHTCCCBCSCCCCEEEE-ETTEEEEEE-ETTEEEECSEEEECGGGCGG
T ss_pred HHHHHHHHHHHHHHcCCEEECCCEEEEEEE-eCCEEEEEE-ECCeEEECCEEEECCCCCcc
Confidence 457788888888899999999999999987 456665555 47889999999999998763
No 326
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*
Probab=97.35 E-value=0.00017 Score=70.44 Aligned_cols=33 Identities=30% Similarity=0.464 Sum_probs=31.3
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
+||+|||||+||+.||..|+++|.+ |+|+|+.+
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G~~---V~liE~~~ 34 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGVP---VRLFEMRP 34 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCC---EEEECCTT
T ss_pred CCEEEECchHHHHHHHHHHHHCCCc---EEEEeccC
Confidence 7999999999999999999999988 99999886
No 327
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}
Probab=97.35 E-value=0.00015 Score=73.39 Aligned_cols=59 Identities=19% Similarity=0.229 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCC
Q 011700 203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR 261 (479)
Q Consensus 203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~ 261 (479)
..++.+.+.+.+++.|++++++++|++|..++++++..|.+.+|+++.||.||.+++..
T Consensus 255 ~~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~ 313 (475)
T 3p1w_A 255 LGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV 313 (475)
T ss_dssp TTHHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence 35788889999999999999999999998755778889999999999999999999987
No 328
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}
Probab=97.35 E-value=0.00012 Score=72.38 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=31.1
Q ss_pred CeEEEECCchHHHHHHHHHHHc--CCCCCcEEEEcCCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKR--GVPPGELCIISEEPV 41 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~--g~~~~~V~lie~~~~ 41 (479)
+||+|||||++|+++|..|++. |.+ |+|+|+.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~---V~v~E~~~~ 36 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWA---IDIVEKNDE 36 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSE---EEEECSSCT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCC---EEEEECCCC
Confidence 4899999999999999999998 876 999999865
No 329
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*
Probab=97.32 E-value=0.00011 Score=71.66 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=30.1
Q ss_pred CeEEEECCchHHHHHHHHHHHcCC---CCCcEEEEcCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGV---PPGELCIISEEP 40 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~---~~~~V~lie~~~ 40 (479)
+||+|||||++|+++|++|+++|. +..+|+|+|++.
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~ 39 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF 39 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence 399999999999999999999871 112399999985
No 330
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=97.30 E-value=0.00092 Score=69.59 Aligned_cols=54 Identities=22% Similarity=0.171 Sum_probs=41.5
Q ss_pred HHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC---C--cEEeccEEEEecCCCC
Q 011700 208 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---G--NRLPTDMVVVGIGIRP 262 (479)
Q Consensus 208 ~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~---g--~~i~~D~Vi~a~G~~p 262 (479)
..+.+.+++.|++++++++|+++.. +++++..+.+.+ | .++.+|.||.|+|...
T Consensus 174 ~~L~~~a~~~G~~i~~~~~V~~l~~-~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s 232 (561)
T 3da1_A 174 LEIMKEAVARGAVALNYMKVESFIY-DQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV 232 (561)
T ss_dssp HHHHHHHHHTTCEEEESEEEEEEEE-ETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred HHHHHHHHHcCCEEEcCCEEEEEEE-cCCeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence 3445566778999999999999987 466666676654 3 4789999999999653
No 331
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=97.26 E-value=0.00019 Score=70.99 Aligned_cols=36 Identities=19% Similarity=0.377 Sum_probs=32.4
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
+++|++|||||++|+++|..|++.|++ |+|+|+++.
T Consensus 2 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~---v~v~E~~~~ 37 (384)
T 2bi7_A 2 KSKKILIVGAGFSGAVIGRQLAEKGHQ---VHIIDQRDH 37 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTCE---EEEEESSSS
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCc---EEEEEecCC
Confidence 348999999999999999999998876 999999865
No 332
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*
Probab=97.25 E-value=0.0028 Score=66.30 Aligned_cols=51 Identities=12% Similarity=0.104 Sum_probs=39.2
Q ss_pred HHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe---CCCc--EEeccEEEEecCC
Q 011700 210 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGI 260 (479)
Q Consensus 210 ~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~Vi~a~G~ 260 (479)
+.+.+++.||+++.++.+.++..++++++..+.. .+|+ ++.++.||+|+|-
T Consensus 149 L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg 204 (588)
T 2wdq_A 149 LYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGG 204 (588)
T ss_dssp HHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred HHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCC
Confidence 4455566799999999999998743577766664 4565 6899999999995
No 333
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=97.24 E-value=0.00021 Score=72.73 Aligned_cols=35 Identities=20% Similarity=0.383 Sum_probs=31.9
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
++||+|||||++|++||..|++.|++ |+|+|+++.
T Consensus 16 ~~~v~iiG~G~~Gl~aa~~l~~~g~~---v~v~E~~~~ 50 (478)
T 2ivd_A 16 GMNVAVVGGGISGLAVAHHLRSRGTD---AVLLESSAR 50 (478)
T ss_dssp -CCEEEECCBHHHHHHHHHHHTTTCC---EEEECSSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCC---EEEEEcCCC
Confidence 57999999999999999999999887 999999864
No 334
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=97.23 E-value=0.00023 Score=72.87 Aligned_cols=55 Identities=24% Similarity=0.294 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhCC-cEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC
Q 011700 204 PKIASYYEEYYKSKG-VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI 260 (479)
Q Consensus 204 ~~~~~~~~~~l~~~G-V~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~ 260 (479)
..+.+.+.+.+++.| ++++++++|++|+..+ +.+ .|.+.+|+++.+|.||+|+|.
T Consensus 255 ~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~-~~v-~v~~~~g~~~~ad~vI~a~~~ 310 (495)
T 2vvm_A 255 SAFARRFWEEAAGTGRLGYVFGCPVRSVVNER-DAA-RVTARDGREFVAKRVVCTIPL 310 (495)
T ss_dssp HHHHHHHHHHHHTTTCEEEESSCCEEEEEECS-SSE-EEEETTCCEEEEEEEEECCCG
T ss_pred HHHHHHHHHHhhhcCceEEEeCCEEEEEEEcC-CEE-EEEECCCCEEEcCEEEECCCH
Confidence 567788888888888 9999999999998743 333 577888888999999999985
No 335
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Probab=97.22 E-value=0.00027 Score=72.22 Aligned_cols=36 Identities=22% Similarity=0.181 Sum_probs=32.1
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcC-CCCCcEEEEcCCCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRG-VPPGELCIISEEPV 41 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g-~~~~~V~lie~~~~ 41 (479)
+.+|++|||||++|+++|..|++.| .+ |+|+|+.+.
T Consensus 8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~---v~v~E~~~~ 44 (484)
T 4dsg_A 8 LTPKIVIIGAGPTGLGAAVRLTELGYKN---WHLYECNDT 44 (484)
T ss_dssp CSCCEEEECCSHHHHHHHHHHHHTTCCS---EEEEESSSS
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCC---EEEEeCCCC
Confidence 3589999999999999999999987 44 999999864
No 336
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7
Probab=97.21 E-value=0.00022 Score=70.09 Aligned_cols=34 Identities=26% Similarity=0.437 Sum_probs=31.5
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
+|++|||||++|+++|..|++.|.+ |+|+|+++.
T Consensus 2 ~~v~iiG~G~~Gl~~A~~l~~~g~~---v~v~E~~~~ 35 (367)
T 1i8t_A 2 YDYIIVGSGLFGAVCANELKKLNKK---VLVIEKRNH 35 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGTCC---EEEECSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCc---EEEEecCCC
Confidence 7999999999999999999998887 999999864
No 337
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=97.17 E-value=0.00028 Score=72.33 Aligned_cols=36 Identities=25% Similarity=0.281 Sum_probs=32.6
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
..+||+|||||++|++||..|+++|.+ |+|+|+.+.
T Consensus 32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~---v~vlE~~~~ 67 (498)
T 2iid_A 32 NPKHVVIVGAGMAGLSAAYVLAGAGHQ---VTVLEASER 67 (498)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCE---EEEECSSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCe---EEEEECCCC
Confidence 358999999999999999999999886 999999864
No 338
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=97.15 E-value=0.00047 Score=74.15 Aligned_cols=98 Identities=16% Similarity=0.109 Sum_probs=69.1
Q ss_pred cCeEEEEC--CchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHH
Q 011700 4 AFVYVIVG--GGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWY 81 (479)
Q Consensus 4 ~~dvvIIG--gG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (479)
..+|+||| ||..|+.+|..|++.|.+ |+++++.+ .. . ...+ +. ......+.+
T Consensus 528 gk~VvVIG~GgG~~g~e~A~~l~~~G~~---Vtlv~~~~-l~-~-----~~~~--------~~--------~~~~~~~~l 581 (729)
T 1o94_A 528 GKRVVILNADTYFMAPSLAEKLATAGHE---VTIVSGVH-LA-N-----YMHF--------TL--------EYPNMMRRL 581 (729)
T ss_dssp CSEEEEEECCCSSHHHHHHHHHHHTTCE---EEEEESSC-TT-H-----HHHH--------TT--------CHHHHHHHH
T ss_pred CCeEEEEcCCCCchHHHHHHHHHHcCCE---EEEEeccc-cc-c-----cccc--------cc--------cHHHHHHHH
Confidence 35899999 999999999999998875 99998875 11 0 0000 00 002234567
Q ss_pred HHcCcEEEeCceEEEEECCCcEEEe--CCC-cE------------------EEeceEEeecCCCccc
Q 011700 82 NEHGIELVLGTRVKSADVRRKTLVT--ATG-ET------------------ISYKILIIATGARALK 127 (479)
Q Consensus 82 ~~~gv~~~~~~~v~~i~~~~~~v~~--~~g-~~------------------~~~d~lviAtG~~~~~ 127 (479)
++.||+++.++.+.+++.+...+.. .++ ++ +.+|.||+|+|.+|..
T Consensus 582 ~~~GV~i~~~~~v~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~ 648 (729)
T 1o94_A 582 HELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSEC 648 (729)
T ss_dssp HHTTCEEECSEEEEEEETTEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECC
T ss_pred HhCCCEEEcCcEEEEEECCeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCCh
Confidence 7899999999999999865433332 222 22 8999999999988753
No 339
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Probab=97.14 E-value=0.002 Score=67.50 Aligned_cols=97 Identities=12% Similarity=0.169 Sum_probs=71.4
Q ss_pred CCEEEECCChHHHHHHHHHhhCC--CeEEEEeecCcccc------------------------------c-cCC------
Q 011700 163 GNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCMA------------------------------R-LFT------ 203 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l~------------------------------~-~~~------ 203 (479)
-.|+|||+|..|+-+|..|++.| .+|+++++.+.... . ..+
T Consensus 6 ~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v~~ 85 (602)
T 1kf6_A 6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDY 85 (602)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 36999999999999999999999 99999987532100 0 000
Q ss_pred ------------------------------------------------HHHHHHHHHHHHhCC-cEEEcCCceEEEEEcC
Q 011700 204 ------------------------------------------------PKIASYYEEYYKSKG-VKFVKGTVLSSFDVDS 234 (479)
Q Consensus 204 ------------------------------------------------~~~~~~~~~~l~~~G-V~i~~~~~v~~i~~~~ 234 (479)
..+...+.+.+++.| |+++.++.+.++.. +
T Consensus 86 ~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~-~ 164 (602)
T 1kf6_A 86 FVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILV-D 164 (602)
T ss_dssp HHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEEE-E
T ss_pred HHHHHHHHHHHHHHcCCCcccCCCCcccccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEE-e
Confidence 123344555566678 99999999999987 4
Q ss_pred CCcEEEEEe---CCCc--EEeccEEEEecCC
Q 011700 235 NGKVVAVNL---RDGN--RLPTDMVVVGIGI 260 (479)
Q Consensus 235 ~g~v~~v~~---~~g~--~i~~D~Vi~a~G~ 260 (479)
++++..+.. .+|+ ++.++.||+|+|.
T Consensus 165 ~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg 195 (602)
T 1kf6_A 165 DGHVRGLVAMNMMEGTLVQIRANAVVMATGG 195 (602)
T ss_dssp TTEEEEEEEEETTTTEEEEEECSCEEECCCC
T ss_pred CCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence 566655543 5676 6899999999995
No 340
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*
Probab=97.12 E-value=0.0019 Score=68.37 Aligned_cols=102 Identities=22% Similarity=0.270 Sum_probs=75.2
Q ss_pred CCEEEECCChHHHHHHHHHhh-CCCeEEEEeecCccc--------------------------------------c----
Q 011700 163 GNAVVIGGGYIGMECAASLVI-NKINVTMVFPEAHCM--------------------------------------A---- 199 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~~l--------------------------------------~---- 199 (479)
-.|+|||+|+.|+-+|..|++ .|.+|+++++.+... .
T Consensus 33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~~~ 112 (639)
T 2dkh_A 33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPDPG 112 (639)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEECTT
T ss_pred CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCCCC
Confidence 369999999999999999999 999999998753210 0
Q ss_pred --c---------------------cCC-HHHHHHHHHHHHhCCc--EEEcCCceEEEEEcCC--CcEEEEEeC------C
Q 011700 200 --R---------------------LFT-PKIASYYEEYYKSKGV--KFVKGTVLSSFDVDSN--GKVVAVNLR------D 245 (479)
Q Consensus 200 --~---------------------~~~-~~~~~~~~~~l~~~GV--~i~~~~~v~~i~~~~~--g~v~~v~~~------~ 245 (479)
. .++ ..+.+.+.+.+++.|+ +++.++++++++.+++ +....+.+. +
T Consensus 113 ~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~ 192 (639)
T 2dkh_A 113 QPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHA 192 (639)
T ss_dssp STTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGT
T ss_pred CCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCC
Confidence 0 011 2455677778888877 9999999999987542 222345443 4
Q ss_pred C--cEEeccEEEEecCCCCCh
Q 011700 246 G--NRLPTDMVVVGIGIRPNT 264 (479)
Q Consensus 246 g--~~i~~D~Vi~a~G~~p~~ 264 (479)
| +++.+|.||.|.|.....
T Consensus 193 G~~~~i~a~~vVgADG~~S~v 213 (639)
T 2dkh_A 193 GQIETVQARYVVGCDGARSNV 213 (639)
T ss_dssp TCEEEEEEEEEEECCCTTCHH
T ss_pred CCeEEEEeCEEEECCCcchHH
Confidence 5 579999999999987654
No 341
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}
Probab=97.10 E-value=0.00026 Score=69.94 Aligned_cols=87 Identities=17% Similarity=0.186 Sum_probs=67.3
Q ss_pred CEEEECCChHHHHHHHHHhhC--CCeEEEEeecCcc----------------------c-cc------------------
Q 011700 164 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHC----------------------M-AR------------------ 200 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~----------------------l-~~------------------ 200 (479)
+|+|||+|+.|+.+|..|++. |.+|+++++.+.+ . ..
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 81 (381)
T 3c4a_A 2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHHN 81 (381)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEESS
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeCC
Confidence 689999999999999999998 9999999986543 0 00
Q ss_pred -------------cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700 201 -------------LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 263 (479)
Q Consensus 201 -------------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~ 263 (479)
....++.+.+.+.+++.|++++++++|++++. . +++.+|.||.|.|..+.
T Consensus 82 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~-----------~~~~ad~vV~AdG~~S~ 144 (381)
T 3c4a_A 82 EPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGE--L-----------PLADYDLVVLANGVNHK 144 (381)
T ss_dssp SEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGG--C-----------CGGGCSEEEECCGGGGG
T ss_pred eeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchh--c-----------ccccCCEEEECCCCCch
Confidence 00145667777888888999999998887743 1 13679999999997654
No 342
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=97.09 E-value=0.00039 Score=72.54 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC---CCc--EEeccEEEEecCCC
Q 011700 203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DGN--RLPTDMVVVGIGIR 261 (479)
Q Consensus 203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~---~g~--~i~~D~Vi~a~G~~ 261 (479)
+..+...+.+.+++.|++++.+++|++++. +++.+..|.+. +++ ++.+|.||+|+|.-
T Consensus 187 ~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~-~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~w 249 (571)
T 2rgh_A 187 DARLVIDNIKKAAEDGAYLVSKMKAVGFLY-EGDQIVGVKARDLLTDEVIEIKAKLVINTSGPW 249 (571)
T ss_dssp HHHHHHHHHHHHHHTTCEEESSEEEEEEEE-ETTEEEEEEEEETTTCCEEEEEBSCEEECCGGG
T ss_pred hHHHHHHHHHHHHHcCCeEEeccEEEEEEE-eCCEEEEEEEEEcCCCCEEEEEcCEEEECCChh
Confidence 455666677778899999999999999987 35566666653 343 79999999999954
No 343
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Probab=97.03 E-value=0.00042 Score=73.37 Aligned_cols=35 Identities=29% Similarity=0.454 Sum_probs=31.5
Q ss_pred cCeEEEECCchHHHHHHHHHH---H-cCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFT---K-RGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~---~-~g~~~~~V~lie~~~~ 41 (479)
++||||||||+||++||++|+ + .|.+ |+|||+.+.
T Consensus 22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~---V~vlEK~~~ 60 (643)
T 1jnr_A 22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLK---VTLVEKAAV 60 (643)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTTTTCC---EEEECSSCT
T ss_pred cCCEEEECcCHHHHHHHHHHhhhhhhCCCe---EEEEeCcCC
Confidence 479999999999999999999 5 7877 999999864
No 344
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=96.95 E-value=0.0039 Score=64.97 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=31.4
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecC
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEA 195 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~ 195 (479)
.-.|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 32 ~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~ 65 (571)
T 2rgh_A 32 ELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQD 65 (571)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 4689999999999999999999999999999764
No 345
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=96.93 E-value=0.0007 Score=68.87 Aligned_cols=54 Identities=19% Similarity=0.314 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhC--------CcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC
Q 011700 205 KIASYYEEYYKSK--------GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI 260 (479)
Q Consensus 205 ~~~~~~~~~l~~~--------GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~ 260 (479)
.+.+.+.+.+.+. |.++++++.|++|+.. ++.+ .|.+.+|+++.+|.||++++.
T Consensus 207 ~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~-~~~v-~v~~~~g~~~~ad~vI~a~~~ 268 (472)
T 1b37_A 207 AVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYS-PGGV-TVKTEDNSVYSADYVMVSASL 268 (472)
T ss_dssp HHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEEC-SSCE-EEEETTSCEEEESEEEECSCH
T ss_pred HHHHHHHHhccccccccccccccEEEcCCEEEEEEEc-CCcE-EEEECCCCEEEcCEEEEecCH
Confidence 4455555555544 6789999999999874 3444 488899999999999999873
No 346
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
Probab=96.93 E-value=0.0053 Score=63.63 Aligned_cols=97 Identities=20% Similarity=0.307 Sum_probs=69.8
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc-------------------------------------------
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA------------------------------------------- 199 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------- 199 (479)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+.+..
T Consensus 27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 106 (549)
T 2r0c_A 27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVTRV 106 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEESSB
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEeccC
Confidence 3699999999999999999999999999997632100
Q ss_pred -c-----c--------------------CC-HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC---C--c
Q 011700 200 -R-----L--------------------FT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---G--N 247 (479)
Q Consensus 200 -~-----~--------------------~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~---g--~ 247 (479)
. . ++ ..+.+.+.+.+++. +++++++++++.++++ + .+.+.+ | +
T Consensus 107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~-v-~v~~~~~~~G~~~ 181 (549)
T 2r0c_A 107 GGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER---LRTRSRLDSFEQRDDH-V-RATITDLRTGATR 181 (549)
T ss_dssp TSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG---EECSEEEEEEEECSSC-E-EEEEEETTTCCEE
T ss_pred CCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh---cccCcEEEEEEEeCCE-E-EEEEEECCCCCEE
Confidence 0 0 00 13444555666555 8889999999875444 3 344443 6 4
Q ss_pred EEeccEEEEecCCCCCh
Q 011700 248 RLPTDMVVVGIGIRPNT 264 (479)
Q Consensus 248 ~i~~D~Vi~a~G~~p~~ 264 (479)
++.+|.||.|.|.....
T Consensus 182 ~i~a~~vVgADG~~S~v 198 (549)
T 2r0c_A 182 AVHARYLVACDGASSPT 198 (549)
T ss_dssp EEEEEEEEECCCTTCHH
T ss_pred EEEeCEEEECCCCCcHH
Confidence 79999999999987654
No 347
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=96.85 E-value=0.0028 Score=65.59 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=29.5
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecC
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA 195 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~ 195 (479)
-.|+|||+|..|+-+|..+++ |.+|+++++.+
T Consensus 9 ~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~ 40 (540)
T 1chu_A 9 CDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGP 40 (540)
T ss_dssp CSEEEECCSHHHHHHHHHHTT-TSCEEEECSSC
T ss_pred CCEEEECccHHHHHHHHHHhc-CCcEEEEECCC
Confidence 469999999999999999999 99999999864
No 348
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=96.80 E-value=0.0078 Score=63.17 Aligned_cols=50 Identities=16% Similarity=0.133 Sum_probs=37.6
Q ss_pred HHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe---CCCc--EEeccEEEEecCCC
Q 011700 211 EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGIR 261 (479)
Q Consensus 211 ~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~Vi~a~G~~ 261 (479)
.+.+++.||+++.++.+.++.. +++++..+.. .+|+ .+.++.||+|+|--
T Consensus 162 ~~~~~~~gv~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~ 216 (621)
T 2h88_A 162 YGRSLRYDTSYFVEYFALDLLM-ENGECRGVIALCIEDGTIHRFRAKNTVIATGGY 216 (621)
T ss_dssp HHHHTTSCCEEEETEEEEEEEE-ETTEEEEEEEEETTTCCEEEEEEEEEEECCCCC
T ss_pred HHHHHhCCCEEEEceEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcc
Confidence 3344567899999999999986 4677766655 4565 68999999999953
No 349
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*
Probab=96.78 E-value=0.001 Score=69.07 Aligned_cols=58 Identities=16% Similarity=0.331 Sum_probs=42.6
Q ss_pred HHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC---Cc--EE---eccEEEEecCCCCChhhh
Q 011700 209 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---GN--RL---PTDMVVVGIGIRPNTSLF 267 (479)
Q Consensus 209 ~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~---g~--~i---~~D~Vi~a~G~~p~~~l~ 267 (479)
.+....++.++++++++.|++|.. +++++..|++.+ |+ ++ .++.||+|+|.-....++
T Consensus 201 ~l~~~~~~~~~~i~~~~~V~~i~~-~~~~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG~~~sp~lL 266 (546)
T 1kdg_A 201 YLQTALARPNFTFKTNVMVSNVVR-NGSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRIL 266 (546)
T ss_dssp HHHHHHTCTTEEEECSCCEEEEEE-ETTEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHH
T ss_pred HHHHHhhCCCcEEEeCCEEEEEEE-eCCEEEEEEEEecCCCceeEEEEEeCCEEEEcCChhcCHHHH
Confidence 444444456999999999999987 456788888865 53 34 789999999976544443
No 350
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*
Probab=96.75 E-value=0.00055 Score=70.87 Aligned_cols=34 Identities=24% Similarity=0.473 Sum_probs=31.2
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
+||+||||+|+||+.+|.+|++ +.+ |+|+|+.+.
T Consensus 26 ~yD~IIVGsG~AG~v~A~rLse-g~~---VlvLEaG~~ 59 (536)
T 1ju2_A 26 SYDYVIVGGGTSGCPLAATLSE-KYK---VLVLERGSL 59 (536)
T ss_dssp EEEEEEECCSTTHHHHHHHHTT-TSC---EEEECSSBC
T ss_pred cccEEEECccHHHHHHHHHHhc-CCc---EEEEecCCC
Confidence 5899999999999999999999 876 999999964
No 351
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=96.68 E-value=0.004 Score=62.96 Aligned_cols=100 Identities=15% Similarity=0.191 Sum_probs=60.7
Q ss_pred CCeEEecCHHHHHHHHHHHhc--CCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHh
Q 011700 139 ENVCYLRDLADANRLVNVMKS--CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS 216 (479)
Q Consensus 139 ~~v~~~~~~~~~~~l~~~l~~--~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~ 216 (479)
+.++......+..++.+.+.. .+.++++|+|||.+|..+|..|.+ ..+|+++++ +++-.+.+.+.|.
T Consensus 210 D~v~~i~~~~~i~~~~~~~g~~~~~~~~v~I~GgG~ig~~lA~~L~~-~~~v~iIE~---------d~~r~~~la~~l~- 278 (461)
T 4g65_A 210 DEVFFVAASNHIRSVMSELQRLEKPYRRIMIVGGGNIGASLAKRLEQ-TYSVKLIER---------NLQRAEKLSEELE- 278 (461)
T ss_dssp CEEEEEEETTTHHHHHHHTTGGGSCCCEEEEECCSHHHHHHHHHHTT-TSEEEEEES---------CHHHHHHHHHHCT-
T ss_pred CEEEEEeccchHHHHHHhhccccccccEEEEEcchHHHHHHHHHhhh-cCceEEEec---------CHHHHHHHHHHCC-
Confidence 345555555566666665543 246899999999999999999865 588999875 4444555555442
Q ss_pred CCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCC
Q 011700 217 KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR 261 (479)
Q Consensus 217 ~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~ 261 (479)
+..++.+ |+.-..+ +.+-..-++|.++.+|+..
T Consensus 279 -~~~Vi~G----------D~td~~~-L~ee~i~~~D~~ia~T~~D 311 (461)
T 4g65_A 279 -NTIVFCG----------DAADQEL-LTEENIDQVDVFIALTNED 311 (461)
T ss_dssp -TSEEEES----------CTTCHHH-HHHTTGGGCSEEEECCSCH
T ss_pred -CceEEec----------cccchhh-HhhcCchhhcEEEEcccCc
Confidence 2333322 2100000 1111134689999999865
No 352
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=96.66 E-value=0.0011 Score=71.51 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=34.3
Q ss_pred CCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecC
Q 011700 217 KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 259 (479)
Q Consensus 217 ~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G 259 (479)
.|+++++++.|++|+.++++ + .|.+.+|+++.+|.||+|++
T Consensus 542 ~gl~I~l~t~V~~I~~~~~~-v-~V~~~~G~~i~Ad~VIvA~P 582 (776)
T 4gut_A 542 EGLDIQLKSPVQCIDYSGDE-V-QVTTTDGTGYSAQKVLVTVP 582 (776)
T ss_dssp TTSCEESSCCEEEEECSSSS-E-EEEETTCCEEEESEEEECCC
T ss_pred hCCcEEcCCeeEEEEEcCCE-E-EEEECCCcEEEcCEEEECCC
Confidence 47899999999999874443 3 58888998999999999984
No 353
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=96.59 E-value=0.0012 Score=67.97 Aligned_cols=52 Identities=13% Similarity=0.287 Sum_probs=37.7
Q ss_pred HhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC---cEEeccEEEEecCCCCChhhh
Q 011700 215 KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG---NRLPTDMVVVGIGIRPNTSLF 267 (479)
Q Consensus 215 ~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g---~~i~~D~Vi~a~G~~p~~~l~ 267 (479)
...+++++.++.+.++.. ++++++.+...+. .++.++.||+|.|.--...++
T Consensus 222 ~r~nl~v~~~~~v~~i~~-~~~~a~gv~~~~~~~~~~~~a~~VILsAGai~SP~LL 276 (526)
T 3t37_A 222 GRKNLTILTGSRVRRLKL-EGNQVRSLEVVGRQGSAEVFADQIVLCAGALESPALL 276 (526)
T ss_dssp TCTTEEEECSCEEEEEEE-ETTEEEEEEEEETTEEEEEEEEEEEECSHHHHHHHHH
T ss_pred CCCCeEEEeCCEEEEEEe-cCCeEEEEEEEecCceEEEeecceEEcccccCCcchh
Confidence 356899999999999987 4566666665432 357789999999965444433
No 354
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=96.57 E-value=0.0016 Score=69.14 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=32.2
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
.+||+|||+|++|++||..|++.|++ |+|+|+.+.
T Consensus 107 ~~~v~viG~G~~gl~~a~~l~~~g~~---v~~~e~~~~ 141 (662)
T 2z3y_A 107 TGKVIIIGSGVSGLAAARQLQSFGMD---VTLLEARDR 141 (662)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTTCE---EEEECSSSS
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCe---EEEEecCCC
Confidence 57999999999999999999999986 999999864
No 355
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}
Probab=96.56 E-value=0.0014 Score=68.26 Aligned_cols=37 Identities=27% Similarity=0.330 Sum_probs=31.8
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
+.||+||||||.||+.+|.+|++.+. .+|+|||+.+.
T Consensus 5 ~~yDyIVVGgG~AG~v~A~rLse~~~--~~VLllEaG~~ 41 (577)
T 3q9t_A 5 SHFDFVIVGGGTAGNTVAGRLAENPN--VTVLIVEAGIG 41 (577)
T ss_dssp CEEEEEEESCSHHHHHHHHHHTTSTT--SCEEEECSSCS
T ss_pred CcccEEEECCcHHHHHHHHHHHhCCC--CcEEEEecCCC
Confidence 45999999999999999999998762 23999999865
No 356
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Probab=96.52 E-value=0.021 Score=60.38 Aligned_cols=50 Identities=12% Similarity=0.093 Sum_probs=37.5
Q ss_pred HHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe---CCCc--EEeccEEEEecCCC
Q 011700 211 EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGIR 261 (479)
Q Consensus 211 ~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~Vi~a~G~~ 261 (479)
.+.+++.||+++.++.+.++.. +++++..+.. .+|+ .+.++.||+|+|--
T Consensus 165 ~~~a~~~gv~i~~~~~v~~L~~-~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~ 219 (660)
T 2bs2_A 165 ANECLKLGVSIQDRKEAIALIH-QDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGY 219 (660)
T ss_dssp HHHHHHHTCEEECSEEEEEEEE-ETTEEEEEEEEETTTCCEEEEECSEEEECCCCC
T ss_pred HHHHHhCCCEEEECcEEEEEEe-cCCEEEEEEEEECCCCcEEEEEcCEEEEccCcc
Confidence 3444566899999999999986 4677666654 4565 48999999999953
No 357
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=96.48 E-value=0.0022 Score=69.76 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=32.2
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
.+||+|||+|++||+||..|+++|++ |+|+|+.+.
T Consensus 278 ~~~v~viG~G~aGl~~A~~l~~~g~~---v~v~E~~~~ 312 (852)
T 2xag_A 278 TGKVIIIGSGVSGLAAARQLQSFGMD---VTLLEARDR 312 (852)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCc---EEEEEecCc
Confidence 57999999999999999999999987 999999864
No 358
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*
Probab=96.46 E-value=0.0024 Score=65.54 Aligned_cols=37 Identities=27% Similarity=0.483 Sum_probs=33.0
Q ss_pred CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
..++|++|||+|++|+.+|.+|++.+.+ |+|+|+.+.
T Consensus 9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~---v~~~e~~~~ 45 (507)
T 1coy_A 9 GDRVPALVIGSGYGGAVAALRLTQAGIP---TQIVEMGRS 45 (507)
T ss_dssp TCEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSCC
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCc---EEEEECCCC
Confidence 3468999999999999999999998776 999999864
No 359
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=96.39 E-value=0.024 Score=61.00 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=31.7
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 197 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 197 (479)
.+|+|||+|..|+-.|..|.+.|.+|+++++.+++
T Consensus 337 ~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ 371 (776)
T 4gut_A 337 KSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRI 371 (776)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEecccce
Confidence 57999999999999999999999999999986543
No 360
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Probab=96.36 E-value=0.016 Score=61.42 Aligned_cols=31 Identities=19% Similarity=0.393 Sum_probs=29.3
Q ss_pred CEEEECCChHHHHHHHHHhh-----CCCeEEEEeec
Q 011700 164 NAVVIGGGYIGMECAASLVI-----NKINVTMVFPE 194 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~-----~g~~Vtlv~~~ 194 (479)
.|+|||+|+.|+-+|..|++ .|.+|+++++.
T Consensus 10 dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~ 45 (665)
T 1pn0_A 10 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKR 45 (665)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSS
T ss_pred cEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCC
Confidence 69999999999999999999 99999999975
No 361
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=96.35 E-value=0.0051 Score=62.90 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=29.1
Q ss_pred CEEEECCChHHHHHHHHHhh-CCCeEEEEeecC
Q 011700 164 NAVVIGGGYIGMECAASLVI-NKINVTMVFPEA 195 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~-~g~~Vtlv~~~~ 195 (479)
.|+|||+|..|+-+|..|++ .|.+|+|+++++
T Consensus 12 DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~ 44 (513)
T 4gde_A 12 DVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNE 44 (513)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCCSCEEEEESSS
T ss_pred CEEEECCcHHHHHHHHHHHhhCCCCEEEEECCC
Confidence 59999999999999999987 599999999773
No 362
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Probab=96.31 E-value=0.0024 Score=66.45 Aligned_cols=59 Identities=14% Similarity=0.319 Sum_probs=42.2
Q ss_pred HHHHHHHhCCcEEEcCCceEEEEEcC---CCcEEEEEeC--CCc--EEecc-EEEEecCCCCChhhh
Q 011700 209 YYEEYYKSKGVKFVKGTVLSSFDVDS---NGKVVAVNLR--DGN--RLPTD-MVVVGIGIRPNTSLF 267 (479)
Q Consensus 209 ~~~~~l~~~GV~i~~~~~v~~i~~~~---~g~v~~v~~~--~g~--~i~~D-~Vi~a~G~~p~~~l~ 267 (479)
++...+++.++++++++.|++|..++ +++++.|++. +|+ ++.+. -||+|.|.--...++
T Consensus 232 yL~p~~~r~NL~V~t~a~V~rIl~d~~~~~~ra~GV~~~~~~G~~~~v~A~kEVILsAGa~~SPqLL 298 (583)
T 3qvp_A 232 WLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTIL 298 (583)
T ss_dssp HTTTTTTCTTEEEECSCEEEEEEEECSSSSCEEEEEEEESSTTCEEEEEEEEEEEECSCTTTHHHHH
T ss_pred HHHHhhcCCCcEEEcCCEEEEEEeccCCCCCEEEEEEEEecCCcEEEEEECCEEEEeCCccCCHHHH
Confidence 34444557899999999999998743 5678888875 564 46776 699999966444433
No 363
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Probab=96.26 E-value=0.0032 Score=64.59 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=32.6
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
.++|++|||+|++|+.+|..|++.|.+ |+|+|+.+.
T Consensus 4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~---v~~~e~~~~ 39 (504)
T 1n4w_A 4 GYVPAVVIGTGYGAAVSALRLGEAGVQ---TLMLEMGQL 39 (504)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCc---EEEEeCCCC
Confidence 358999999999999999999998877 999999864
No 364
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*
Probab=96.05 E-value=0.0025 Score=67.52 Aligned_cols=34 Identities=26% Similarity=0.453 Sum_probs=30.6
Q ss_pred cCeEEEECCchHHHHHHHHHHHcC--------CCCCcEEEEcCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRG--------VPPGELCIISEEP 40 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g--------~~~~~V~lie~~~ 40 (479)
.++|+|||||++||+||..|.+.| ++ |+|+|+++
T Consensus 56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~---V~v~E~~~ 97 (721)
T 3ayj_A 56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGID---VQIYEADP 97 (721)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEE---EEEECCCT
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCcccccCCCce---EEEEeccC
Confidence 368999999999999999999987 54 99999986
No 365
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=96.03 E-value=0.0054 Score=56.21 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=31.7
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 197 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 197 (479)
.|+|||+|+.|+-+|..|++.|.+|+|+++.+.+
T Consensus 4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~ 37 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGS 37 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 5999999999999999999999999999987654
No 366
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1
Probab=96.02 E-value=0.0049 Score=64.39 Aligned_cols=55 Identities=13% Similarity=0.254 Sum_probs=40.3
Q ss_pred HHHhCCcEEEcCCceEEEEEcCC---CcEEEEEeC--CCc--EEec-cEEEEecCCCCChhhh
Q 011700 213 YYKSKGVKFVKGTVLSSFDVDSN---GKVVAVNLR--DGN--RLPT-DMVVVGIGIRPNTSLF 267 (479)
Q Consensus 213 ~l~~~GV~i~~~~~v~~i~~~~~---g~v~~v~~~--~g~--~i~~-D~Vi~a~G~~p~~~l~ 267 (479)
..++.++++++++.|++|..+++ +++..|+.. +|+ ++.+ +.||+|+|.-....++
T Consensus 240 ~~~~~nl~i~~~~~v~~l~~~~~~~~~~~~GV~~~~~~g~~~~v~A~k~VILaaG~~~sp~lL 302 (587)
T 1gpe_A 240 NYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLIL 302 (587)
T ss_dssp TTTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHH
T ss_pred hhcCCCcEEEcCCEEEEEEECCCCCCCEEEEEEEEeCCCcEEEEEecccEEEccCCCCCHHHH
Confidence 34567999999999999986432 467777764 564 5678 8999999976555543
No 367
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Probab=95.94 E-value=0.035 Score=58.62 Aligned_cols=33 Identities=30% Similarity=0.484 Sum_probs=29.5
Q ss_pred CCEEEECCChHHHHHHHHHh---h-CCCeEEEEeecC
Q 011700 163 GNAVVIGGGYIGMECAASLV---I-NKINVTMVFPEA 195 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~---~-~g~~Vtlv~~~~ 195 (479)
-.|+|||+|..|+-+|..++ + .|.+|+++++.+
T Consensus 23 ~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~ 59 (643)
T 1jnr_A 23 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA 59 (643)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcC
Confidence 36999999999999999999 5 899999998764
No 368
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*
Probab=95.92 E-value=0.0053 Score=63.55 Aligned_cols=52 Identities=19% Similarity=0.346 Sum_probs=39.1
Q ss_pred HHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC---Cc--EEecc-EEEEecCCC
Q 011700 210 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---GN--RLPTD-MVVVGIGIR 261 (479)
Q Consensus 210 ~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~---g~--~i~~D-~Vi~a~G~~ 261 (479)
+....++.|+++++++.|++|..++++++..|.+.+ |+ ++.++ .||+|+|.-
T Consensus 215 l~~a~~~~~~~i~~~~~V~~i~~~~~~~~~GV~~~~~~~g~~~~i~A~k~VIlaaG~~ 272 (546)
T 2jbv_A 215 IHPIVEQENFTLLTGLRARQLVFDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAI 272 (546)
T ss_dssp TGGGTTCTTEEEECSCEEEEEEECTTSBEEEEEEESSTTSCEEEEEEEEEEEECSHHH
T ss_pred HHHHhcCCCcEEEeCCEEEEEEECCCCeEEEEEEEECCCCcEEEEEeCccEEEecCcc
Confidence 333334679999999999999874337777887644 53 68898 999999964
No 369
>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*
Probab=95.91 E-value=0.032 Score=57.00 Aligned_cols=62 Identities=15% Similarity=0.092 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCC------cEEEEEeCCC-----cEEeccEEEEecCCCCChh
Q 011700 204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG------KVVAVNLRDG-----NRLPTDMVVVGIGIRPNTS 265 (479)
Q Consensus 204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g------~v~~v~~~~g-----~~i~~D~Vi~a~G~~p~~~ 265 (479)
.++.++++...++.+..+.++++|++++..+++ ....|+..++ +++.++.|++|+|..|..+
T Consensus 145 ~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~~P~iP 217 (501)
T 4b63_A 145 LEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGGTAKMP 217 (501)
T ss_dssp HHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCCEECCC
T ss_pred HHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcCCCCCCC
Confidence 356677777777777788999999999864322 2345555443 3688999999999887754
No 370
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Probab=95.89 E-value=0.0033 Score=65.25 Aligned_cols=35 Identities=29% Similarity=0.462 Sum_probs=30.8
Q ss_pred cCeEEEECCchHHHHHHHHHHH-cCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTK-RGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~-~g~~~~~V~lie~~~~ 41 (479)
.||+||||||+||+.+|.+|++ .+.+ |+|||+.+.
T Consensus 2 ~yD~IIVG~G~aG~v~A~rLse~~~~~---VlllEaG~~ 37 (566)
T 3fim_B 2 DFDYVVVGAGNAGNVVAARLTEDPDVS---VLVLEAGVS 37 (566)
T ss_dssp CEEEEESCCSTTHHHHHHHHTTSTTCC---EEEECSSBC
T ss_pred CcCEEEECCcHHHHHHHHHHHhCcCCc---EEEEecCCc
Confidence 4899999999999999999998 3555 999999864
No 371
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=95.62 E-value=0.012 Score=59.22 Aligned_cols=82 Identities=21% Similarity=0.170 Sum_probs=60.0
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 240 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~ 240 (479)
.++++.|||.|.+|+-+|..|.++|.+|++.+..+... ++ ..+.|++.||+++.+....++
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~----~~-----~~~~L~~~gi~~~~g~~~~~~---------- 68 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDE----NP-----TAQSLLEEGIKVVCGSHPLEL---------- 68 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGG----CH-----HHHHHHHTTCEEEESCCCGGG----------
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccC----Ch-----HHHHHHhCCCEEEECCChHHh----------
Confidence 57899999999999999999999999999998764211 12 234577789998876531100
Q ss_pred EEeCCCcEEeccEEEEecCCCCChhhh
Q 011700 241 VNLRDGNRLPTDMVVVGIGIRPNTSLF 267 (479)
Q Consensus 241 v~~~~g~~i~~D~Vi~a~G~~p~~~l~ 267 (479)
+ ++ .+|.||+++|..|+.+.+
T Consensus 69 --~-~~---~~d~vv~spgi~~~~p~~ 89 (451)
T 3lk7_A 69 --L-DE---DFCYMIKNPGIPYNNPMV 89 (451)
T ss_dssp --G-GS---CEEEEEECTTSCTTSHHH
T ss_pred --h-cC---CCCEEEECCcCCCCChhH
Confidence 0 00 179999999998877644
No 372
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}
Probab=95.42 E-value=0.029 Score=56.70 Aligned_cols=39 Identities=15% Similarity=0.331 Sum_probs=35.5
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA 42 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~ 42 (479)
|++.+||+|||+|++|+++|..|++.|++ |+++|+++..
T Consensus 17 ~~~~~dv~iiG~G~~g~~~a~~l~~~g~~---v~~~e~~~~~ 55 (475)
T 3p1w_A 17 QGEHYDVIILGTGLKECILSGLLSHYGKK---ILVLDRNPYY 55 (475)
T ss_dssp CCCEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSS
T ss_pred ccccCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeccCCC
Confidence 56679999999999999999999999988 9999999753
No 373
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=95.29 E-value=0.021 Score=54.80 Aligned_cols=81 Identities=17% Similarity=0.166 Sum_probs=59.1
Q ss_pred CCCCEEEECCChHHHH-HHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEE
Q 011700 161 SGGNAVVIGGGYIGME-CAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV 239 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E-~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~ 239 (479)
..+++.|||.|-+|+. +|..|.++|.+|++.+..+. ++ ..+.|++.||+++.+.....+
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~------~~-----~~~~L~~~gi~v~~g~~~~~l--------- 62 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY------PP-----MSTQLEALGIDVYEGFDAAQL--------- 62 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC------TT-----HHHHHHHTTCEEEESCCGGGG---------
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC------cH-----HHHHHHhCCCEEECCCCHHHc---------
Confidence 3688999999999997 89999999999999987643 11 234567789998865421100
Q ss_pred EEEeCCCcEEeccEEEEecCCCCChhhhh
Q 011700 240 AVNLRDGNRLPTDMVVVGIGIRPNTSLFE 268 (479)
Q Consensus 240 ~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~ 268 (479)
.. -.+|.||+++|..|..+.+.
T Consensus 63 ----~~---~~~d~vV~Spgi~~~~p~~~ 84 (326)
T 3eag_A 63 ----DE---FKADVYVIGNVAKRGMDVVE 84 (326)
T ss_dssp ----GS---CCCSEEEECTTCCTTCHHHH
T ss_pred ----CC---CCCCEEEECCCcCCCCHHHH
Confidence 00 14799999999998877553
No 374
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=95.23 E-value=0.054 Score=48.68 Aligned_cols=107 Identities=16% Similarity=0.259 Sum_probs=67.2
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 240 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~ 240 (479)
.+++++|||+|.+|...+..|.+.|.+|+++.+. +.+++. +..++.+++++.... +.
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~-------~~~~l~----~l~~~~~i~~i~~~~----~~-------- 86 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT-------VSAEIN----EWEAKGQLRVKRKKV----GE-------- 86 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS-------CCHHHH----HHHHTTSCEEECSCC----CG--------
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC-------CCHHHH----HHHHcCCcEEEECCC----CH--------
Confidence 5799999999999999999999999999999753 344443 333455677664321 11
Q ss_pred EEeCCCcEEeccEEEEecCCCCChhhhhcccccccCcEEEcCc----ccC-CCCCeEEEeeec
Q 011700 241 VNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGR----LQS-SNSSVYAVGDVA 298 (479)
Q Consensus 241 v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~~~~~~~g~i~Vd~~----l~t-~~~~IyA~GD~~ 298 (479)
..--.+|+|+.||+............ . .+|.||.- +-+ ..|.++--||..
T Consensus 87 -----~dL~~adLVIaAT~d~~~N~~I~~~a--k-~gi~VNvvD~p~~~~f~~Paiv~rg~l~ 141 (223)
T 3dfz_A 87 -----EDLLNVFFIVVATNDQAVNKFVKQHI--K-NDQLVNMASSFSDGNIQIPAQFSRGRLS 141 (223)
T ss_dssp -----GGSSSCSEEEECCCCTHHHHHHHHHS--C-TTCEEEC-----CCSEECCEEEEETTEE
T ss_pred -----hHhCCCCEEEECCCCHHHHHHHHHHH--h-CCCEEEEeCCcccCeEEEeeEEEeCCEE
Confidence 01124799999998764433222111 2 45666621 222 456776666654
No 375
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=95.19 E-value=0.012 Score=59.92 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=31.0
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 197 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 197 (479)
|+|+|||+|..|+-+|..|++.|.+|+|+++++++
T Consensus 2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~ 36 (501)
T 4dgk_A 2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKP 36 (501)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC---
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCC
Confidence 68999999999999999999999999999998764
No 376
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=94.92 E-value=0.049 Score=57.55 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=29.2
Q ss_pred CCEEEECCChHHHHHHHHHhhC------CCeEEEEeec
Q 011700 163 GNAVVIGGGYIGMECAASLVIN------KINVTMVFPE 194 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~------g~~Vtlv~~~ 194 (479)
-.|+|||+|..|+-.|..+++. |.+|+++++.
T Consensus 23 ~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~ 60 (662)
T 3gyx_A 23 VDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKA 60 (662)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred cCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEec
Confidence 3699999999999999999997 9999999874
No 377
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=94.90 E-value=0.016 Score=55.53 Aligned_cols=74 Identities=9% Similarity=0.185 Sum_probs=48.4
Q ss_pred HHHHHHhcCCCCCEEEECCChHHHHHHHHHhh--CCCeEEEEeecCcccccc------CC-HHHHHHHHHHHHhCCcEEE
Q 011700 152 RLVNVMKSCSGGNAVVIGGGYIGMECAASLVI--NKINVTMVFPEAHCMARL------FT-PKIASYYEEYYKSKGVKFV 222 (479)
Q Consensus 152 ~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l~~~------~~-~~~~~~~~~~l~~~GV~i~ 222 (479)
+....+.+.....|+|||+|+.|+-+|..|++ .|.+|+++++.+.+-... ++ ..+.+.+.+.+++.|+++.
T Consensus 55 ~~~~~~~~~~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~~~~~~~~~~l~~~~~~~~~e~Gv~~~ 134 (326)
T 3fpz_A 55 RYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYE 134 (326)
T ss_dssp HHHHHHHHTTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCSTTCCCEEEETTTHHHHHHTTCCCE
T ss_pred HHHhhhhhccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEeCCccCCHHHHHHHHHHHHHHcCCEEE
Confidence 33344444456789999999999999999974 599999999876532111 01 1112233455677888876
Q ss_pred cCC
Q 011700 223 KGT 225 (479)
Q Consensus 223 ~~~ 225 (479)
.+.
T Consensus 135 ~~~ 137 (326)
T 3fpz_A 135 DEG 137 (326)
T ss_dssp ECS
T ss_pred ECC
Confidence 543
No 378
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=94.58 E-value=0.037 Score=56.37 Aligned_cols=62 Identities=21% Similarity=0.286 Sum_probs=46.4
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCC-----------------HHHHHHHHHHHHhCCcEEE
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT-----------------PKIASYYEEYYKSKGVKFV 222 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~-----------------~~~~~~~~~~l~~~GV~i~ 222 (479)
.+.+|+|||+|.+|+.+|..|.+.|.+|+++++.+++..+... ......+.+.+++.|+++.
T Consensus 32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~ 110 (498)
T 2iid_A 32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRLN 110 (498)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEETTCHHHHHHHHHTTCCEE
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceeeeccCCCCchhhcCcccccchHHHHHHHHHHhCCCce
Confidence 3578999999999999999999999999999988765443100 0113456677788887653
No 379
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*
Probab=94.47 E-value=0.04 Score=57.63 Aligned_cols=61 Identities=13% Similarity=0.120 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCC-CcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700 203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSN-GKVVAVNLRDGNRLPTDMVVVGIGIRPN 263 (479)
Q Consensus 203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~-g~v~~v~~~~g~~i~~D~Vi~a~G~~p~ 263 (479)
..++.+.+.+.++..|.++++++.|.+|..+++ +++..+.+.+|+++.||.||......|.
T Consensus 377 ~g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~~lp~ 438 (650)
T 1vg0_A 377 QGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSE 438 (650)
T ss_dssp TTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCT
T ss_pred hhHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChhhcCH
Confidence 457888888999999999999999999987443 7888888888999999999997765553
No 380
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=94.23 E-value=0.064 Score=45.03 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=30.6
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEE 39 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 39 (479)
.+.+++|+|+|.-|...|..|.+.|++ |++++++
T Consensus 2 ~~~~vlI~G~G~vG~~la~~L~~~g~~---V~vid~~ 35 (153)
T 1id1_A 2 RKDHFIVCGHSILAINTILQLNQRGQN---VTVISNL 35 (153)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTTCC---EEEEECC
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCC---EEEEECC
Confidence 357899999999999999999998887 9999886
No 381
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=94.02 E-value=0.058 Score=54.24 Aligned_cols=80 Identities=19% Similarity=0.172 Sum_probs=56.4
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
.+++.|||.|.+|+++|..|.++|++ |++.|..+.. .....+.+++
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~~~G~~---V~~~D~~~~~-------------------------------~~~~~~~L~~ 54 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAKLGAI---VTVNDGKPFD-------------------------------ENPTAQSLLE 54 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHTTCE---EEEEESSCGG-------------------------------GCHHHHHHHH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCE---EEEEeCCccc-------------------------------CChHHHHHHh
Confidence 46899999999999999999999987 8999886410 0112345677
Q ss_pred cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCccccc
Q 011700 84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLE 129 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~ 129 (479)
.|+++..+.. +++ ..++ .+|.||+++|..+..|.
T Consensus 55 ~gi~~~~g~~-----~~~----~~~~---~~d~vv~spgi~~~~p~ 88 (451)
T 3lk7_A 55 EGIKVVCGSH-----PLE----LLDE---DFCYMIKNPGIPYNNPM 88 (451)
T ss_dssp TTCEEEESCC-----CGG----GGGS---CEEEEEECTTSCTTSHH
T ss_pred CCCEEEECCC-----hHH----hhcC---CCCEEEECCcCCCCChh
Confidence 8999887742 110 0010 17999999998776554
No 382
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=93.99 E-value=0.06 Score=51.63 Aligned_cols=78 Identities=13% Similarity=0.002 Sum_probs=53.7
Q ss_pred cCeEEEECCchHHHH-HHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700 4 AFVYVIVGGGVAAGY-AALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN 82 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~-aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (479)
.+++.|||.|.+|++ +|..|.++|++ |++.|..+.. ...+.++
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~---V~~~D~~~~~---------------------------------~~~~~L~ 47 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFE---VSGCDAKMYP---------------------------------PMSTQLE 47 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCE---EEEEESSCCT---------------------------------THHHHHH
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCE---EEEEcCCCCc---------------------------------HHHHHHH
Confidence 368999999999997 78888898987 8999887420 1134567
Q ss_pred HcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCccccc
Q 011700 83 EHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLE 129 (479)
Q Consensus 83 ~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~ 129 (479)
+.|+++..+.. ++. +.. -.+|.||+++|-.+..|.
T Consensus 48 ~~gi~v~~g~~-----~~~----l~~---~~~d~vV~Spgi~~~~p~ 82 (326)
T 3eag_A 48 ALGIDVYEGFD-----AAQ----LDE---FKADVYVIGNVAKRGMDV 82 (326)
T ss_dssp HTTCEEEESCC-----GGG----GGS---CCCSEEEECTTCCTTCHH
T ss_pred hCCCEEECCCC-----HHH----cCC---CCCCEEEECCCcCCCCHH
Confidence 78998887631 110 000 147999999997765443
No 383
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=93.68 E-value=0.066 Score=44.14 Aligned_cols=33 Identities=18% Similarity=0.347 Sum_probs=30.0
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
.+++|+|+|.-|...|..|.+.|++ |+++|+++
T Consensus 7 ~~v~I~G~G~iG~~la~~L~~~g~~---V~~id~~~ 39 (141)
T 3llv_A 7 YEYIVIGSEAAGVGLVRELTAAGKK---VLAVDKSK 39 (141)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCC---EEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCe---EEEEECCH
Confidence 5899999999999999999999887 89998873
No 384
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=93.56 E-value=0.099 Score=54.18 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=33.7
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 199 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~ 199 (479)
++++|+|.|..|..+|..|.+.|.+|+++++.+....
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~ 385 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVC 385 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSC
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHh
Confidence 8999999999999999999999999999998866443
No 385
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=93.47 E-value=0.064 Score=53.22 Aligned_cols=34 Identities=29% Similarity=0.332 Sum_probs=31.5
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 197 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 197 (479)
+|+|||+|..|+-+|..|++.|.+|+++++.+++
T Consensus 2 dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~ 35 (421)
T 3nrn_A 2 RAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMI 35 (421)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 6899999999999999999999999999987654
No 386
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=93.24 E-value=0.089 Score=42.95 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=29.3
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
.++++|||+|.-|...|..|.+.|.+ |+++++++
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~---v~~~d~~~ 37 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHD---IVLIDIDK 37 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCe---EEEEECCH
Confidence 46899999999999999999998865 89998763
No 387
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=93.15 E-value=0.098 Score=43.99 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=30.1
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
..+++|||+|.-|...|..|.+.|.+ |+++++++
T Consensus 19 ~~~v~IiG~G~iG~~la~~L~~~g~~---V~vid~~~ 52 (155)
T 2g1u_A 19 SKYIVIFGCGRLGSLIANLASSSGHS---VVVVDKNE 52 (155)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCG
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCe---EEEEECCH
Confidence 36899999999999999999998875 99998874
No 388
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=93.08 E-value=0.077 Score=52.57 Aligned_cols=34 Identities=29% Similarity=0.256 Sum_probs=31.6
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 197 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 197 (479)
+|+|||+|..|+-+|..|++.|.+|+++++++++
T Consensus 2 dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~ 35 (425)
T 3ka7_A 2 KTVVIGAGLGGLLSAARLSKAGHEVEVFERLPIT 35 (425)
T ss_dssp EEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred cEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCC
Confidence 6899999999999999999999999999988654
No 389
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}
Probab=93.01 E-value=0.068 Score=53.36 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=31.3
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecC
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA 195 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~ 195 (479)
++|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus 23 ~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 23 KRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 679999999999999999999999999999875
No 390
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=92.97 E-value=0.1 Score=43.05 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=30.3
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
.+++|||.|.-|...|..|.+.|++ |+++|+++
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g~~---v~vid~~~ 40 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASDIP---LVVIETSR 40 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCC---EEEEESCH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCC---EEEEECCH
Confidence 5799999999999999999998887 99999884
No 391
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=92.79 E-value=0.1 Score=51.66 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=33.2
Q ss_pred CCCEEEECCChHHHHHHHHHhhCC-CeEEEEeecCcc
Q 011700 162 GGNAVVIGGGYIGMECAASLVINK-INVTMVFPEAHC 197 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g-~~Vtlv~~~~~~ 197 (479)
..+|+|||+|..|+-+|..|++.| .+|+++++++++
T Consensus 6 ~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~ 42 (424)
T 2b9w_A 6 DSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHV 42 (424)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCS
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCC
Confidence 578999999999999999999999 899999988765
No 392
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=92.75 E-value=0.085 Score=50.86 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=31.0
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecC
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA 195 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~ 195 (479)
.+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~ 37 (369)
T 3dme_A 5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAE 37 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 469999999999999999999999999999885
No 393
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=92.58 E-value=0.11 Score=50.73 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=33.3
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeec-Ccc
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE-AHC 197 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~~ 197 (479)
.+.+|+|||+|..|+-+|..|.+.|.+|++++++ +++
T Consensus 43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~v 80 (376)
T 2e1m_A 43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRV 80 (376)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCC
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecccccc
Confidence 3578999999999999999999999999999988 543
No 394
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=92.56 E-value=0.088 Score=52.28 Aligned_cols=34 Identities=26% Similarity=0.478 Sum_probs=31.2
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 197 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 197 (479)
+|+|||+|..|+-+|..|++.|.+|+++++++++
T Consensus 3 dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~ 36 (431)
T 3k7m_X 3 DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERL 36 (431)
T ss_dssp EEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 5899999999999999999999999999987654
No 395
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=92.48 E-value=0.16 Score=42.54 Aligned_cols=36 Identities=19% Similarity=0.138 Sum_probs=32.7
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 196 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 196 (479)
.+++++|+|+|.+|..++..|.+.|.+|+++.+.+.
T Consensus 18 ~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~ 53 (155)
T 2g1u_A 18 KSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY 53 (155)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 468899999999999999999999999999987654
No 396
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=92.47 E-value=0.31 Score=49.32 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=31.9
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
+||+|||||++||+||..|++.|++ |+|+|+.+.
T Consensus 40 ~~v~iiGaG~aGl~aA~~l~~~g~~---v~v~E~~~~ 73 (495)
T 2vvm_A 40 WDVIVIGGGYCGLTATRDLTVAGFK---TLLLEARDR 73 (495)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTTCC---EEEECSSSB
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCC---EEEEeCCCC
Confidence 7999999999999999999999986 999999864
No 397
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=92.46 E-value=0.095 Score=52.83 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=32.0
Q ss_pred CCEEEECCChHHHHHHHHHhhCCC--eEEEEeecCcc
Q 011700 163 GNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHC 197 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~--~Vtlv~~~~~~ 197 (479)
++|+|||+|..|+-+|..|++.|. +|+++++++++
T Consensus 3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~ 39 (477)
T 3nks_A 3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERL 39 (477)
T ss_dssp CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSS
T ss_pred ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence 579999999999999999999999 99999987654
No 398
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*
Probab=92.35 E-value=0.13 Score=50.43 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=30.7
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecC
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA 195 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~ 195 (479)
++|+|||+|..|++.|..+++.|.+|+++++.+
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~ 34 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP 34 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence 479999999999999999999999999999764
No 399
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=92.22 E-value=0.16 Score=41.79 Aligned_cols=77 Identities=16% Similarity=0.245 Sum_probs=50.7
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEE
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAV 241 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v 241 (479)
.++++|+|.|.+|..++..|.+.|.+|+++++.+ +..+ .+++.|+.++.+.. .+.. +
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~---------~~~~----~~~~~g~~~i~gd~-------~~~~---~ 63 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR---------TRVD----ELRERGVRAVLGNA-------ANEE---I 63 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH---------HHHH----HHHHTTCEEEESCT-------TSHH---H
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH---------HHHH----HHHHcCCCEEECCC-------CCHH---H
Confidence 4689999999999999999999999999998652 2222 23456777664421 0000 0
Q ss_pred EeCCCcEEeccEEEEecCCCC
Q 011700 242 NLRDGNRLPTDMVVVGIGIRP 262 (479)
Q Consensus 242 ~~~~g~~i~~D~Vi~a~G~~p 262 (479)
+..-..-.+|.|+++++...
T Consensus 64 -l~~a~i~~ad~vi~~~~~~~ 83 (140)
T 3fwz_A 64 -MQLAHLECAKWLILTIPNGY 83 (140)
T ss_dssp -HHHTTGGGCSEEEECCSCHH
T ss_pred -HHhcCcccCCEEEEECCChH
Confidence 00001225899999988654
No 400
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=92.09 E-value=0.13 Score=50.17 Aligned_cols=33 Identities=33% Similarity=0.465 Sum_probs=30.9
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecC
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA 195 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~ 195 (479)
.+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 6 ~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~ 38 (382)
T 1y56_B 6 SEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF 38 (382)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 579999999999999999999999999999873
No 401
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=92.05 E-value=0.36 Score=45.91 Aligned_cols=85 Identities=25% Similarity=0.273 Sum_probs=53.4
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEE
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN 242 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~ 242 (479)
.++.|||+|.+|.-+|..|.+.|.+|+++.|++. +.+++.|+.+..... ..+.. .. + .+
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~---------------~~i~~~Gl~~~~~~~-g~~~~-~~--~-~~- 61 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDY---------------ETVKAKGIRIRSATL-GDYTF-RP--A-AV- 61 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTH---------------HHHHHHCEEEEETTT-CCEEE-CC--S-CE-
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChH---------------HHHHhCCcEEeecCC-CcEEE-ee--e-ee-
Confidence 4799999999999999999999999999987520 234566776653100 00110 00 0 01
Q ss_pred eCCCc-EE-eccEEEEecCCCCChhhhh
Q 011700 243 LRDGN-RL-PTDMVVVGIGIRPNTSLFE 268 (479)
Q Consensus 243 ~~~g~-~i-~~D~Vi~a~G~~p~~~l~~ 268 (479)
+.+-. .. ++|.|++++......+.++
T Consensus 62 ~~~~~~~~~~~DlVilavK~~~~~~~l~ 89 (320)
T 3i83_A 62 VRSAAELETKPDCTLLCIKVVEGADRVG 89 (320)
T ss_dssp ESCGGGCSSCCSEEEECCCCCTTCCHHH
T ss_pred ECCHHHcCCCCCEEEEecCCCChHHHHH
Confidence 12222 22 6899999998776555443
No 402
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=91.99 E-value=0.14 Score=51.82 Aligned_cols=36 Identities=28% Similarity=0.331 Sum_probs=32.9
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 197 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 197 (479)
..+|+|||+|..|+-+|..|.+.|.+|+++++.+++
T Consensus 11 ~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 46 (489)
T 2jae_A 11 SHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRP 46 (489)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence 468999999999999999999999999999987654
No 403
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=91.96 E-value=0.13 Score=49.88 Aligned_cols=35 Identities=26% Similarity=0.258 Sum_probs=31.5
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 197 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 197 (479)
.++|+|||+|..|+-+|..|+ .|.+|+++++.+.+
T Consensus 9 ~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~~~ 43 (381)
T 3nyc_A 9 EADYLVIGAGIAGASTGYWLS-AHGRVVVLEREAQP 43 (381)
T ss_dssp ECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSSST
T ss_pred cCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCCCc
Confidence 578999999999999999999 59999999987543
No 404
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=91.95 E-value=0.14 Score=52.27 Aligned_cols=36 Identities=31% Similarity=0.429 Sum_probs=32.7
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 197 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 197 (479)
..+|+|||+|..|+-+|..|++.|.+|+++++++++
T Consensus 4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~ 39 (520)
T 1s3e_A 4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRV 39 (520)
T ss_dssp BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 368999999999999999999999999999987654
No 405
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=91.92 E-value=0.17 Score=47.31 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=33.0
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
||+..+|.|||+|.-|...|..+++.|++ |+++|+++
T Consensus 1 Mm~~~kV~VIGaG~mG~~iA~~la~~G~~---V~l~d~~~ 37 (283)
T 4e12_A 1 MTGITNVTVLGTGVLGSQIAFQTAFHGFA---VTAYDINT 37 (283)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCe---EEEEeCCH
Confidence 77778999999999999999999999886 89998774
No 406
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=91.90 E-value=0.12 Score=50.41 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=31.0
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 196 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 196 (479)
-+|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus 4 ~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~ 37 (389)
T 2gf3_A 4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP 37 (389)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3699999999999999999999999999998653
No 407
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=91.86 E-value=0.16 Score=39.99 Aligned_cols=33 Identities=12% Similarity=0.223 Sum_probs=28.6
Q ss_pred CeEEEECCchHHHHHHHHHHHcC-CCCCcEEEEcCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRG-VPPGELCIISEEP 40 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g-~~~~~V~lie~~~ 40 (479)
++++|+|+|..|...+..|.+.| .+ |+++++++
T Consensus 6 ~~v~I~G~G~iG~~~~~~l~~~g~~~---v~~~~r~~ 39 (118)
T 3ic5_A 6 WNICVVGAGKIGQMIAALLKTSSNYS---VTVADHDL 39 (118)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCSSEE---EEEEESCH
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCce---EEEEeCCH
Confidence 68999999999999999999987 44 88888763
No 408
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=91.75 E-value=0.13 Score=52.59 Aligned_cols=36 Identities=19% Similarity=0.367 Sum_probs=32.7
Q ss_pred CCCEEEECCChHHHHHHHHHhhCC-CeEEEEeecCcc
Q 011700 162 GGNAVVIGGGYIGMECAASLVINK-INVTMVFPEAHC 197 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g-~~Vtlv~~~~~~ 197 (479)
..+|+|||+|..|+-+|..|.+.| .+|+|+++++++
T Consensus 8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~ri 44 (516)
T 1rsg_A 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRV 44 (516)
T ss_dssp EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence 357999999999999999999999 999999988654
No 409
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=91.73 E-value=0.15 Score=49.40 Aligned_cols=32 Identities=28% Similarity=0.449 Sum_probs=30.2
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPE 194 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~ 194 (479)
.+|+|||+|.+|+-+|..|++.|.+|+++++.
T Consensus 7 ~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~ 38 (363)
T 1c0p_A 7 KRVVVLGSGVIGLSSALILARKGYSVHILARD 38 (363)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence 57999999999999999999999999999975
No 410
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=91.70 E-value=0.18 Score=45.33 Aligned_cols=35 Identities=20% Similarity=0.403 Sum_probs=30.9
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
+..+|+|||||..|...+..|.+.|.+ |+|++++.
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~---VtVvap~~ 64 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGAA---ITVVAPTV 64 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCCC---EEEECSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCE---EEEECCCC
Confidence 357899999999999999999998876 99998864
No 411
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=91.55 E-value=0.16 Score=49.01 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=29.7
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEE 39 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 39 (479)
||+.+++.|||+|.-|...|..|++.|++ |++++++
T Consensus 1 mm~~mki~iiG~G~~G~~~a~~L~~~g~~---V~~~~r~ 36 (359)
T 1bg6_A 1 MIESKTYAVLGLGNGGHAFAAYLALKGQS---VLAWDID 36 (359)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSC
T ss_pred CCCcCeEEEECCCHHHHHHHHHHHhCCCE---EEEEeCC
Confidence 77778999999999999999999998875 8888776
No 412
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=91.54 E-value=0.16 Score=51.12 Aligned_cols=38 Identities=26% Similarity=0.384 Sum_probs=33.3
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM 198 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l 198 (479)
...+|+|||+|..|+-+|..|++.|.+|+++++++++-
T Consensus 15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~G 52 (478)
T 2ivd_A 15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLG 52 (478)
T ss_dssp --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSB
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCC
Confidence 35789999999999999999999999999999987643
No 413
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=91.34 E-value=0.08 Score=53.11 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=32.2
Q ss_pred CCEEEECCChHHHHHHHHHhhCC------CeEEEEeecCcc
Q 011700 163 GNAVVIGGGYIGMECAASLVINK------INVTMVFPEAHC 197 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g------~~Vtlv~~~~~~ 197 (479)
++|+|||+|..|+-+|..|++.| .+|+++++.+++
T Consensus 6 ~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~ 46 (470)
T 3i6d_A 6 KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRV 46 (470)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSS
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCC
Confidence 57999999999999999999999 999999988654
No 414
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=91.28 E-value=0.28 Score=40.99 Aligned_cols=33 Identities=18% Similarity=0.181 Sum_probs=30.6
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE 194 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~ 194 (479)
.++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence 578999999999999999999999999999875
No 415
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=91.28 E-value=0.21 Score=50.74 Aligned_cols=76 Identities=16% Similarity=0.104 Sum_probs=56.1
Q ss_pred CCCCEEEECCChHHHH-HHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEE
Q 011700 161 SGGNAVVIGGGYIGME-CAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV 239 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E-~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~ 239 (479)
..+++.|||-|-+|+- +|..|.+.|.+|+..+..+ ++ ..+.|++.||++..+.....
T Consensus 21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~-------~~-----~~~~l~~~gi~~~~g~~~~~---------- 78 (494)
T 4hv4_A 21 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAP-------NS-----VTQHLTALGAQIYFHHRPEN---------- 78 (494)
T ss_dssp -CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSC-------CH-----HHHHHHHTTCEEESSCCGGG----------
T ss_pred cCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCC-------CH-----HHHHHHHCCCEEECCCCHHH----------
Confidence 3589999999999996 8999999999999987542 12 12457788999887632110
Q ss_pred EEEeCCCcEEeccEEEEecCCCCChhh
Q 011700 240 AVNLRDGNRLPTDMVVVGIGIRPNTSL 266 (479)
Q Consensus 240 ~v~~~~g~~i~~D~Vi~a~G~~p~~~l 266 (479)
...+|.||+++|..|..+.
T Consensus 79 --------~~~~d~vV~Spgi~~~~p~ 97 (494)
T 4hv4_A 79 --------VLDASVVVVSTAISADNPE 97 (494)
T ss_dssp --------GTTCSEEEECTTSCTTCHH
T ss_pred --------cCCCCEEEECCCCCCCCHH
Confidence 0137999999999887654
No 416
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=91.19 E-value=0.28 Score=49.15 Aligned_cols=38 Identities=11% Similarity=0.226 Sum_probs=34.5
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
|+.++||||||||++|++||..|++.|++ |+|+|+++.
T Consensus 8 ~~~~~dvvVIGaG~~GL~aA~~La~~G~~---V~vlE~~~~ 45 (453)
T 2bcg_G 8 IDTDYDVIVLGTGITECILSGLLSVDGKK---VLHIDKQDH 45 (453)
T ss_dssp CCCBCSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSS
T ss_pred ccccCCEEEECcCHHHHHHHHHHHHCCCe---EEEEeCCCC
Confidence 34568999999999999999999999987 999999975
No 417
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=91.13 E-value=0.18 Score=49.41 Aligned_cols=35 Identities=17% Similarity=0.340 Sum_probs=32.2
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 197 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 197 (479)
.+++|||+|..|+.+|..|.+.|.+|+++++++++
T Consensus 4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~ 38 (384)
T 2bi7_A 4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI 38 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence 47999999999999999999999999999987655
No 418
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A
Probab=90.95 E-value=0.17 Score=50.44 Aligned_cols=38 Identities=13% Similarity=0.295 Sum_probs=35.0
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
|++++|++|||+|++|+++|..|++.|++ |+++|+++.
T Consensus 3 ~~~~~~v~iiG~G~~gl~~a~~l~~~g~~---v~~~e~~~~ 40 (433)
T 1d5t_A 3 MDEEYDVIVLGTGLTECILSGIMSVNGKK---VLHMDRNPY 40 (433)
T ss_dssp CCSBCSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSS
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCc---EEEEecCCC
Confidence 67789999999999999999999999987 999999865
No 419
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=90.93 E-value=0.19 Score=50.99 Aligned_cols=36 Identities=33% Similarity=0.469 Sum_probs=33.3
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 197 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 197 (479)
..+|+|||+|..|+-+|..|.+.|.+|+++++.+++
T Consensus 13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ 48 (504)
T 1sez_A 13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKA 48 (504)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCC
Confidence 468999999999999999999999999999998765
No 420
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=90.89 E-value=0.2 Score=44.77 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=29.3
Q ss_pred eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
+++|||+|.-|...|..|.+.|++ |+++|+++
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g~~---v~vid~~~ 33 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKYG---VVIINKDR 33 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTTCC---EEEEESCH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCe---EEEEECCH
Confidence 699999999999999999998887 99999874
No 421
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=90.84 E-value=0.22 Score=43.04 Aligned_cols=34 Identities=24% Similarity=0.058 Sum_probs=30.2
Q ss_pred cCeEEEECCchHHHHHHHHHHHc-CCCCCcEEEEcCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKR-GVPPGELCIISEEP 40 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~-g~~~~~V~lie~~~ 40 (479)
+.+++|||+|.-|...|..|.+. |++ |+++|+++
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~---V~vid~~~ 73 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKI---SLGIEIRE 73 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSC---EEEEESCH
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCe---EEEEECCH
Confidence 35799999999999999999998 887 89998874
No 422
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=90.72 E-value=0.091 Score=52.62 Aligned_cols=77 Identities=18% Similarity=0.274 Sum_probs=54.8
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 240 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~ 240 (479)
.+++++|||.|.+|+..|..|.++|.+|+..+..+.... . ..++ .|+++..+... . + .
T Consensus 4 ~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~---~--------~~l~-~G~~~~~g~~~----~--~----~ 61 (439)
T 2x5o_A 4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPG---L--------DKLP-EAVERHTGSLN----D--E----W 61 (439)
T ss_dssp TTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTT---G--------GGSC-TTSCEEESSCC----H--H----H
T ss_pred CCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcch---h--------HHhh-CCCEEEECCCc----H--H----H
Confidence 468999999999999999999999999999987653211 1 2345 68887755421 0 0 0
Q ss_pred EEeCCCcEEeccEEEEecCCCCChhh
Q 011700 241 VNLRDGNRLPTDMVVVGIGIRPNTSL 266 (479)
Q Consensus 241 v~~~~g~~i~~D~Vi~a~G~~p~~~l 266 (479)
+ . .+|.|++++|..|..+.
T Consensus 62 ~------~-~~d~vV~s~gi~~~~p~ 80 (439)
T 2x5o_A 62 L------M-AADLIVASPGIALAHPS 80 (439)
T ss_dssp H------H-TCSEEEECTTSCTTCHH
T ss_pred h------c-cCCEEEeCCCCCCCCHH
Confidence 0 1 36899999998776553
No 423
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=90.72 E-value=0.19 Score=50.25 Aligned_cols=60 Identities=17% Similarity=0.304 Sum_probs=44.3
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccccc----------------CCHHHHHHHHHHHHhCCcEEEc
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL----------------FTPKIASYYEEYYKSKGVKFVK 223 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~----------------~~~~~~~~~~~~l~~~GV~i~~ 223 (479)
.+|+|||+|..|+-+|..|.+.|.+|+++++++++-.+. +... ...+.+.+++.|++...
T Consensus 6 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~-~~~~~~~~~~~g~~~~~ 81 (453)
T 2yg5_A 6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVSPD-QTALISLLDELGLKTFE 81 (453)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEEETTEEEECSCCCBCTT-CHHHHHHHHHTTCCEEE
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceeccccCCceeccCCeEecCc-cHHHHHHHHHcCCcccc
Confidence 579999999999999999999999999999876543221 1111 23455667788887543
No 424
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=90.68 E-value=0.21 Score=49.60 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=31.9
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCC-eEEEEeecCc
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAH 196 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~ 196 (479)
..+|+|||+|..|+-+|..|++.|. +|+++++.+.
T Consensus 6 ~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~ 41 (438)
T 3dje_A 6 SSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPV 41 (438)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 3579999999999999999999999 9999998754
No 425
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*
Probab=90.66 E-value=0.66 Score=48.49 Aligned_cols=37 Identities=14% Similarity=0.298 Sum_probs=34.0
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA 42 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~ 42 (479)
.+|||+|||+|..|...|..|++.|.+ |.+||++++.
T Consensus 7 ~~~D~~i~GtGl~~~~~a~~~~~~g~~---vl~id~~~~~ 43 (650)
T 1vg0_A 7 SDFDVIVIGTGLPESIIAAACSRSGQR---VLHVDSRSYY 43 (650)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSS
T ss_pred CcCCEEEECCcHHHHHHHHHHHhCCCE---EEEEcCCCcc
Confidence 369999999999999999999999988 9999999874
No 426
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=90.37 E-value=0.17 Score=49.65 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=30.7
Q ss_pred CCEEEECCChHHHHHHHHHhh-CC-CeEEEEeecC
Q 011700 163 GNAVVIGGGYIGMECAASLVI-NK-INVTMVFPEA 195 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~-~g-~~Vtlv~~~~ 195 (479)
.+|+|||+|..|+.+|..|++ .| .+|+++++.+
T Consensus 22 ~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~ 56 (405)
T 2gag_B 22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW 56 (405)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 469999999999999999999 89 9999999875
No 427
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=90.34 E-value=0.23 Score=49.61 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=31.0
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
+.++|.|||.|.+|+++|..|.++|++ |++.|...
T Consensus 4 ~~~~v~viG~G~~G~~~a~~l~~~G~~---v~~~D~~~ 38 (439)
T 2x5o_A 4 QGKNVVIIGLGLTGLSCVDFFLARGVT---PRVMDTRM 38 (439)
T ss_dssp TTCCEEEECCHHHHHHHHHHHHTTTCC---CEEEESSS
T ss_pred CCCEEEEEeecHHHHHHHHHHHhCCCE---EEEEECCC
Confidence 346899999999999999999999987 78988875
No 428
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=90.33 E-value=0.27 Score=40.27 Aligned_cols=33 Identities=21% Similarity=0.137 Sum_probs=30.4
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE 194 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~ 194 (479)
.++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 478999999999999999999999999999764
No 429
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=90.29 E-value=0.19 Score=51.14 Aligned_cols=74 Identities=16% Similarity=0.134 Sum_probs=52.6
Q ss_pred CeEEEECCchHHHH-HHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700 5 FVYVIVGGGVAAGY-AALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE 83 (479)
Q Consensus 5 ~dvvIIGgG~aGl~-aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
+++.|||-|-+|++ +|..|.++|++ |++.|..+. ...+.+++
T Consensus 23 ~~v~viGiG~sG~s~~A~~l~~~G~~---V~~~D~~~~----------------------------------~~~~~l~~ 65 (494)
T 4hv4_A 23 RHIHFVGIGGAGMGGIAEVLANEGYQ---ISGSDLAPN----------------------------------SVTQHLTA 65 (494)
T ss_dssp CEEEEETTTSTTHHHHHHHHHHTTCE---EEEECSSCC----------------------------------HHHHHHHH
T ss_pred CEEEEEEEcHhhHHHHHHHHHhCCCe---EEEEECCCC----------------------------------HHHHHHHH
Confidence 68999999999997 69999999987 888876521 01234677
Q ss_pred cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCccccc
Q 011700 84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLE 129 (479)
Q Consensus 84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~ 129 (479)
.|+++..+.. ++. + -.+|.||+.+|..+..|.
T Consensus 66 ~gi~~~~g~~-----~~~----~-----~~~d~vV~Spgi~~~~p~ 97 (494)
T 4hv4_A 66 LGAQIYFHHR-----PEN----V-----LDASVVVVSTAISADNPE 97 (494)
T ss_dssp TTCEEESSCC-----GGG----G-----TTCSEEEECTTSCTTCHH
T ss_pred CCCEEECCCC-----HHH----c-----CCCCEEEECCCCCCCCHH
Confidence 8998887631 110 1 137999999997765543
No 430
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=90.26 E-value=0.29 Score=39.90 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=29.0
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
.+++|+|+|.-|...|..|.+.|.+ |+++++++
T Consensus 7 ~~v~I~G~G~iG~~~a~~l~~~g~~---v~~~d~~~ 39 (144)
T 2hmt_A 7 KQFAVIGLGRFGGSIVKELHRMGHE---VLAVDINE 39 (144)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCC---CEEEESCH
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCH
Confidence 5799999999999999999998876 78888763
No 431
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=90.22 E-value=0.25 Score=52.52 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=31.5
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 196 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 196 (479)
.+|+|||+|..|+-+|..|++.|.+|+|+++.+.
T Consensus 265 ~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~ 298 (689)
T 3pvc_A 265 DDIAIIGGGIVSALTALALQRRGAVVTLYCADAQ 298 (689)
T ss_dssp SSEEEECCSHHHHHHHHHHHTTTCCEEEEESSSS
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCCc
Confidence 5899999999999999999999999999998643
No 432
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=90.21 E-value=0.38 Score=45.72 Aligned_cols=80 Identities=15% Similarity=0.251 Sum_probs=49.2
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 240 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~ 240 (479)
...++.|||+|.+|.-+|..|.+.|.+|+++ +++. - .+.+++.|+.+... .. .+.. . + .
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~---------~----~~~i~~~g~~~~~~-~~-~~~~--~--~-~ 76 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQ---------H----VQAIEATGLRLETQ-SF-DEQV--K--V-S 76 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHH---------H----HHHHHHHCEEEECS-SC-EEEE--C--C-E
T ss_pred cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHh---------H----HHHHHhCCeEEEcC-CC-cEEE--e--e-e
Confidence 3678999999999999999999999999998 4321 1 12344567766522 11 1111 0 0 1
Q ss_pred EEeCCCcE-EeccEEEEecCCCC
Q 011700 241 VNLRDGNR-LPTDMVVVGIGIRP 262 (479)
Q Consensus 241 v~~~~g~~-i~~D~Vi~a~G~~p 262 (479)
. ..+-+. -++|.|++++....
T Consensus 77 ~-~~~~~~~~~~D~vilavk~~~ 98 (318)
T 3hwr_A 77 A-SSDPSAVQGADLVLFCVKSTD 98 (318)
T ss_dssp E-ESCGGGGTTCSEEEECCCGGG
T ss_pred e-eCCHHHcCCCCEEEEEccccc
Confidence 1 122111 25899999987653
No 433
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*
Probab=90.18 E-value=0.23 Score=48.83 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=32.0
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 197 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 197 (479)
.+++|||+|..|+-+|..|++.|.+|+++++++++
T Consensus 30 ~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~ 64 (397)
T 3hdq_A 30 FDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHI 64 (397)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCEEEECccHHHHHHHHHHHHCCCceEEEeccCCC
Confidence 47999999999999999999999999999987654
No 434
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=90.14 E-value=0.36 Score=49.41 Aligned_cols=79 Identities=19% Similarity=0.182 Sum_probs=57.1
Q ss_pred CCCCEEEECCChHHHH-HHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEE
Q 011700 161 SGGNAVVIGGGYIGME-CAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV 239 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E-~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~ 239 (479)
..+++.+||-|-+|+- +|..|.++|.+|+..+.... ++ ..+.|++.||++..+.....+
T Consensus 18 ~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~------~~-----~~~~L~~~gi~~~~G~~~~~~--------- 77 (524)
T 3hn7_A 18 QGMHIHILGICGTFMGSLALLARALGHTVTGSDANIY------PP-----MSTQLEQAGVTIEEGYLIAHL--------- 77 (524)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC------TT-----HHHHHHHTTCEEEESCCGGGG---------
T ss_pred cCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCC------cH-----HHHHHHHCCCEEECCCCHHHc---------
Confidence 5789999999999997 68889999999999887532 11 234567789998766421110
Q ss_pred EEEeCCCcEEeccEEEEecCCCCChhhh
Q 011700 240 AVNLRDGNRLPTDMVVVGIGIRPNTSLF 267 (479)
Q Consensus 240 ~v~~~~g~~i~~D~Vi~a~G~~p~~~l~ 267 (479)
.-.+|.||+++|..|..+.+
T Consensus 78 --------~~~~d~vV~Spgi~~~~p~l 97 (524)
T 3hn7_A 78 --------QPAPDLVVVGNAMKRGMDVI 97 (524)
T ss_dssp --------CSCCSEEEECTTCCTTSHHH
T ss_pred --------CCCCCEEEECCCcCCCCHHH
Confidence 01479999999998877644
No 435
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Probab=90.09 E-value=0.29 Score=46.60 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=32.6
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
|.+.++|.|||+|.-|...|..|++.|+. +|+++|.++
T Consensus 1 M~~~~kI~VIGaG~~G~~ia~~la~~g~~--~V~l~D~~~ 38 (317)
T 2ewd_A 1 MIERRKIAVIGSGQIGGNIAYIVGKDNLA--DVVLFDIAE 38 (317)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHHTCC--EEEEECSSS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCc--eEEEEeCCc
Confidence 66678999999999999999999998872 399998874
No 436
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=90.08 E-value=0.27 Score=50.66 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=31.4
Q ss_pred CCCEEEECCChHHHHHHHHHhh---CCCeEEEEeecC
Q 011700 162 GGNAVVIGGGYIGMECAASLVI---NKINVTMVFPEA 195 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~---~g~~Vtlv~~~~ 195 (479)
..+|+|||+|..|+-+|..|++ .|.+|+|+++.+
T Consensus 25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~ 61 (550)
T 2e4g_A 25 IDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPD 61 (550)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence 4689999999999999999999 999999999864
No 437
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=90.04 E-value=0.3 Score=39.83 Aligned_cols=33 Identities=24% Similarity=0.092 Sum_probs=30.1
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE 194 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~ 194 (479)
.++++|+|+|.+|..++..|.+.|.+|+++.+.
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~ 38 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN 38 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 578999999999999999999999999988764
No 438
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}
Probab=90.02 E-value=0.22 Score=49.06 Aligned_cols=36 Identities=19% Similarity=0.358 Sum_probs=32.5
Q ss_pred CCCEEEECCChHHHHHHHHHhhC-CCeEEEEeecCcc
Q 011700 162 GGNAVVIGGGYIGMECAASLVIN-KINVTMVFPEAHC 197 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~ 197 (479)
..+++|||+|..|+-+|..|++. |.+|+++++++++
T Consensus 7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~ 43 (399)
T 1v0j_A 7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHI 43 (399)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 35899999999999999999998 9999999988654
No 439
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*
Probab=89.84 E-value=0.19 Score=48.37 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=29.6
Q ss_pred CEEEECCChHHHHHHHHHhhCC------CeEEEEeecC
Q 011700 164 NAVVIGGGYIGMECAASLVINK------INVTMVFPEA 195 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g------~~Vtlv~~~~ 195 (479)
+|+|||+|.+|+-+|..|++.| .+|+++++..
T Consensus 2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~ 39 (351)
T 3g3e_A 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF 39 (351)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence 5899999999999999999998 8999999874
No 440
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=89.79 E-value=2 Score=42.61 Aligned_cols=35 Identities=26% Similarity=0.399 Sum_probs=30.9
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecC
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA 195 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~ 195 (479)
.+.++.|||.|++|+-+|..|++.|.+|+.+++.+
T Consensus 10 ~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~ 44 (431)
T 3ojo_A 10 HGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQ 44 (431)
T ss_dssp --CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred cCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 47889999999999999999999999999998764
No 441
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=89.65 E-value=0.16 Score=47.13 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=31.3
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
+.++|+|||||..|...+..|.+.|.+ |+||+++.
T Consensus 12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~---VtViap~~ 46 (274)
T 1kyq_A 12 KDKRILLIGGGEVGLTRLYKLMPTGCK---LTLVSPDL 46 (274)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCE---EEEEEEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCCE---EEEEcCCC
Confidence 357899999999999999999998876 99999874
No 442
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}
Probab=89.63 E-value=0.3 Score=47.43 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=31.1
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
+.+|||+|+|.||..+|..|...|.+ +|+++|++.
T Consensus 188 d~kVVi~GAGaAG~~iA~ll~~~Ga~--~I~v~D~~G 222 (398)
T 2a9f_A 188 EVSIVVNGGGSAGLSITRKLLAAGAT--KVTVVDKFG 222 (398)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCC--EEEEEETTE
T ss_pred ccEEEEECCCHHHHHHHHHHHHcCCC--eEEEEECCC
Confidence 56899999999999999999999974 499999874
No 443
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Probab=89.48 E-value=0.37 Score=45.95 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=31.5
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
|+..++|.|||+|..|...|..|+..|+- +|+++|.++
T Consensus 1 m~~~~kI~VIGaG~vG~~ia~~la~~g~~--~v~L~Di~~ 38 (322)
T 1t2d_A 1 MAPKAKIVLVGSGMIGGVMATLIVQKNLG--DVVLFDIVK 38 (322)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHTTCC--EEEEECSSS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCC--eEEEEeCCH
Confidence 66667999999999999999999998872 299998764
No 444
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=89.45 E-value=0.5 Score=45.24 Aligned_cols=78 Identities=15% Similarity=0.235 Sum_probs=50.0
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEE
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAV 241 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v 241 (479)
..++.|||+|.+|.-+|..|.+.|.+|+++.|.++ .+.+++.|+.+.... . .... . + ..
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~~~--------------~~~~~~~g~~~~~~~-~-~~~~--~--~-~~ 61 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGEAINVLARGAT--------------LQALQTAGLRLTEDG-A-THTL--P--V-RA 61 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCHHH--------------HHHHHHTCEEEEETT-E-EEEE--C--C-EE
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEEChHH--------------HHHHHHCCCEEecCC-C-eEEE--e--e-eE
Confidence 35899999999999999999999999999876311 123556788765321 1 1111 0 0 11
Q ss_pred EeCCCc-EEeccEEEEecCCC
Q 011700 242 NLRDGN-RLPTDMVVVGIGIR 261 (479)
Q Consensus 242 ~~~~g~-~i~~D~Vi~a~G~~ 261 (479)
..+-. .-++|.|++++...
T Consensus 62 -~~~~~~~~~~D~Vilavk~~ 81 (335)
T 3ghy_A 62 -THDAAALGEQDVVIVAVKAP 81 (335)
T ss_dssp -ESCHHHHCCCSEEEECCCHH
T ss_pred -ECCHHHcCCCCEEEEeCCch
Confidence 11211 23589999998653
No 445
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=89.41 E-value=0.24 Score=49.81 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=32.0
Q ss_pred CCEEEECCChHHHHHHHHHhhCC--CeEEEEeecCcc
Q 011700 163 GNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHC 197 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~ 197 (479)
.+|+|||+|..|+-+|..|.+.| .+|+++++.+++
T Consensus 5 ~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~ 41 (475)
T 3lov_A 5 KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERL 41 (475)
T ss_dssp CEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSS
T ss_pred ccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 57999999999999999999999 999999987653
No 446
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=89.40 E-value=0.34 Score=51.17 Aligned_cols=37 Identities=24% Similarity=0.402 Sum_probs=33.9
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM 198 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l 198 (479)
.++++|||+|..|+.+|..|.+.|.+|+++++.+++-
T Consensus 107 ~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~g 143 (662)
T 2z3y_A 107 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVG 143 (662)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSB
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 5789999999999999999999999999999887653
No 447
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=89.37 E-value=0.36 Score=47.33 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=30.3
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
..+|+|||+|..|+.+|..|...|.+ |+++|..+
T Consensus 190 ~~kV~ViG~G~iG~~aa~~a~~lGa~---V~v~D~~~ 223 (405)
T 4dio_A 190 AAKIFVMGAGVAGLQAIATARRLGAV---VSATDVRP 223 (405)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSST
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCE---EEEEcCCH
Confidence 46899999999999999999998875 89998875
No 448
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=89.32 E-value=0.33 Score=52.69 Aligned_cols=37 Identities=24% Similarity=0.402 Sum_probs=33.5
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM 198 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l 198 (479)
.++|+|||+|..|+.+|..|.+.|.+|+++++.+++-
T Consensus 278 ~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~G 314 (852)
T 2xag_A 278 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVG 314 (852)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCC
Confidence 4689999999999999999999999999999887653
No 449
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7
Probab=89.30 E-value=0.27 Score=47.84 Aligned_cols=34 Identities=24% Similarity=0.449 Sum_probs=31.0
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 197 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 197 (479)
+++|||+|..|+-+|..|++.|.+|+++++++++
T Consensus 3 ~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~ 36 (367)
T 1i8t_A 3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI 36 (367)
T ss_dssp EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 5899999999999999999999999999987653
No 450
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=89.20 E-value=0.41 Score=46.35 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=31.0
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
++|+|||||.-|..++..++++|++ ++++|+++.
T Consensus 2 K~I~ilGgg~~g~~~~~~Ak~~G~~---vv~vd~~~~ 35 (363)
T 4ffl_A 2 KTICLVGGKLQGFEAAYLSKKAGMK---VVLVDKNPQ 35 (363)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCTT
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCCC
Confidence 6899999999999999999999998 889988764
No 451
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=89.11 E-value=0.44 Score=38.64 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=29.3
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE 194 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~ 194 (479)
..+++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~ 36 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDID 36 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 357999999999999999999999999998764
No 452
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=89.00 E-value=0.36 Score=37.83 Aligned_cols=33 Identities=33% Similarity=0.334 Sum_probs=29.7
Q ss_pred CCCEEEECCChHHHHHHHHHhhCC-CeEEEEeec
Q 011700 162 GGNAVVIGGGYIGMECAASLVINK-INVTMVFPE 194 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g-~~Vtlv~~~ 194 (479)
.++++|+|+|.+|..++..|.+.| .+|+++.|.
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~ 38 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHD 38 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence 468999999999999999999999 889888765
No 453
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=89.00 E-value=0.36 Score=46.85 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=31.1
Q ss_pred CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEE 39 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 39 (479)
.+.+|||+|+|.+|..+|..|...|.+ +|+++|+.
T Consensus 191 ~~~kVVv~GAGaAG~~iAkll~~~G~~--~I~v~Dr~ 225 (388)
T 1vl6_A 191 EEVKVVVNGIGAAGYNIVKFLLDLGVK--NVVAVDRK 225 (388)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCC--EEEEEETT
T ss_pred CCcEEEEECCCHHHHHHHHHHHhCCCC--eEEEEECC
Confidence 357899999999999999999998864 49999998
No 454
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=88.92 E-value=0.32 Score=45.11 Aligned_cols=34 Identities=26% Similarity=0.494 Sum_probs=31.7
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 194 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~ 194 (479)
.+++++|||+|.+|...+..|.+.|.+|+++.+.
T Consensus 12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~ 45 (274)
T 1kyq_A 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (274)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence 4789999999999999999999999999999865
No 455
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=88.26 E-value=0.45 Score=45.23 Aligned_cols=32 Identities=16% Similarity=0.384 Sum_probs=28.9
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEE 39 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 39 (479)
+++.|||+|.-|...|..|++.|.+ |++++++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~---V~~~~r~ 34 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHC---VSVVSRS 34 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCE---EEEECST
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCe---EEEEeCC
Confidence 6899999999999999999998875 8998776
No 456
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Probab=88.18 E-value=0.49 Score=47.89 Aligned_cols=36 Identities=22% Similarity=0.160 Sum_probs=32.5
Q ss_pred CCCEEEECCChHHHHHHHHHhhCC-CeEEEEeecCcc
Q 011700 162 GGNAVVIGGGYIGMECAASLVINK-INVTMVFPEAHC 197 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g-~~Vtlv~~~~~~ 197 (479)
..+++|||+|..|+-+|..|.+.| .+|+++++.+++
T Consensus 9 ~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~ 45 (484)
T 4dsg_A 9 TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTP 45 (484)
T ss_dssp SCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 468999999999999999999998 799999988654
No 457
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=88.05 E-value=0.41 Score=46.54 Aligned_cols=34 Identities=21% Similarity=0.154 Sum_probs=30.2
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
..+|+|||+|..|+.+|..|...|.+ |+++|+.+
T Consensus 184 ~~kV~ViG~G~iG~~aa~~a~~lGa~---V~v~D~~~ 217 (381)
T 3p2y_A 184 PASALVLGVGVAGLQALATAKRLGAK---TTGYDVRP 217 (381)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHHTCE---EEEECSSG
T ss_pred CCEEEEECchHHHHHHHHHHHHCCCE---EEEEeCCH
Confidence 46899999999999999999998875 89998874
No 458
>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}
Probab=87.96 E-value=0.44 Score=45.26 Aligned_cols=92 Identities=11% Similarity=-0.060 Sum_probs=0.0
Q ss_pred CCEEEECCChHHHHHHHHHhhCC-CeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCC-ceEEEEEcCCCcEEE
Q 011700 163 GNAVVIGGGYIGMECAASLVINK-INVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT-VLSSFDVDSNGKVVA 240 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g-~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~-~v~~i~~~~~g~v~~ 240 (479)
.++.|||.|.+|.-+|..|.+.| .+|+++.+.+....+ .+...+.+.+.|+ -. .+.+.-.
T Consensus 25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~------~~~~~~~~~~~g~----~~~s~~e~~~-------- 86 (317)
T 4ezb_A 25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAA------SGALRARAAELGV----EPLDDVAGIA-------- 86 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTT------HHHHHHHHHHTTC----EEESSGGGGG--------
T ss_pred CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccc------hHHHHHHHHHCCC----CCCCHHHHHh--------
Q ss_pred EEeCCCcEEeccEEEEecCCCCChhhhhccccc-ccCcEEEc
Q 011700 241 VNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVT 281 (479)
Q Consensus 241 v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd 281 (479)
.+|.|+++++.......++.-... ..+.+.||
T Consensus 87 ---------~aDvVi~avp~~~~~~~~~~i~~~l~~~~ivv~ 119 (317)
T 4ezb_A 87 ---------CADVVLSLVVGAATKAVAASAAPHLSDEAVFID 119 (317)
T ss_dssp ---------GCSEEEECCCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred ---------cCCEEEEecCCHHHHHHHHHHHhhcCCCCEEEE
No 459
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=87.95 E-value=1.4 Score=41.55 Aligned_cols=72 Identities=25% Similarity=0.296 Sum_probs=0.0
Q ss_pred CEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe
Q 011700 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL 243 (479)
Q Consensus 164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~ 243 (479)
++.|||+|.+|.-+|..|. .|.+|+++.|+ +.-.+.+++.|+.+...... .... +..
T Consensus 4 kI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~-------------~~~~~~l~~~G~~~~~~~~~-~~~~--------~~~ 60 (307)
T 3ego_A 4 KIGIIGGGSVGLLCAYYLS-LYHDVTVVTRR-------------QEQAAAIQSEGIRLYKGGEE-FRAD--------CSA 60 (307)
T ss_dssp EEEEECCSHHHHHHHHHHH-TTSEEEEECSC-------------HHHHHHHHHHCEEEEETTEE-EEEC--------CEE
T ss_pred EEEEECCCHHHHHHHHHHh-cCCceEEEECC-------------HHHHHHHHhCCceEecCCCe-eccc--------ccc
Q ss_pred CCCcEEeccEEEEec
Q 011700 244 RDGNRLPTDMVVVGI 258 (479)
Q Consensus 244 ~~g~~i~~D~Vi~a~ 258 (479)
.....-++|.|++++
T Consensus 61 ~~~~~~~~D~vilav 75 (307)
T 3ego_A 61 DTSINSDFDLLVVTV 75 (307)
T ss_dssp ESSCCSCCSEEEECC
T ss_pred cccccCCCCEEEEEe
No 460
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*
Probab=87.89 E-value=0.58 Score=44.46 Aligned_cols=37 Identities=22% Similarity=0.350 Sum_probs=30.7
Q ss_pred CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011700 2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEE 39 (479)
Q Consensus 2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 39 (479)
|++++|+|||+|..|.+.|..|+..+. ..+|.++|.+
T Consensus 4 m~~~KI~IIGaG~vG~~la~~l~~~~~-~~ei~L~Di~ 40 (317)
T 3d0o_A 4 FKGNKVVLIGNGAVGSSYAFSLVNQSI-VDELVIIDLD 40 (317)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHCS-CSEEEEECSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCC
Confidence 345799999999999999999998765 3468998865
No 461
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=87.78 E-value=0.5 Score=44.87 Aligned_cols=37 Identities=19% Similarity=0.374 Sum_probs=32.4
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM 198 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l 198 (479)
.++|.|||+|.+|.-+|..++..|.+|++++..+..+
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l 42 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQI 42 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHH
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHH
Confidence 4789999999999999999999999999998765443
No 462
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=87.70 E-value=0.43 Score=43.61 Aligned_cols=36 Identities=25% Similarity=0.243 Sum_probs=31.5
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
..+|+|||+|-.|..+|..|++.|.. +|+++|++..
T Consensus 31 ~~~VlVvG~Gg~G~~va~~La~~Gv~--~i~lvD~d~v 66 (249)
T 1jw9_B 31 DSRVLIVGLGGLGCAASQYLASAGVG--NLTLLDFDTV 66 (249)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTCS--EEEEECCCBC
T ss_pred CCeEEEEeeCHHHHHHHHHHHHcCCC--eEEEEcCCCc
Confidence 36899999999999999999999864 4999998854
No 463
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}
Probab=87.63 E-value=0.64 Score=44.09 Aligned_cols=36 Identities=8% Similarity=0.265 Sum_probs=31.0
Q ss_pred CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011700 2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEE 39 (479)
Q Consensus 2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 39 (479)
|+..+|.|||+|.-|.+.|..|+..|+ .+|+++|.+
T Consensus 6 ~~~~kv~ViGaG~vG~~ia~~l~~~g~--~~v~l~D~~ 41 (315)
T 3tl2_A 6 IKRKKVSVIGAGFTGATTAFLLAQKEL--ADVVLVDIP 41 (315)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTC--CEEEEECCG
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCC--CeEEEEecc
Confidence 445789999999999999999999887 369999887
No 464
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=87.51 E-value=0.5 Score=44.74 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=28.2
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEE 39 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 39 (479)
+++.|||+|.-|.+.|..|++.|.+ |++++++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~---V~~~~r~ 34 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGED---VHFLLRR 34 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCC---EEEECST
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCe---EEEEEcC
Confidence 6899999999999999999998875 8998775
No 465
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=87.43 E-value=0.29 Score=48.85 Aligned_cols=31 Identities=29% Similarity=0.322 Sum_probs=29.5
Q ss_pred CCEEEECCChHHHHHHHHHhhCC-CeEEEEee
Q 011700 163 GNAVVIGGGYIGMECAASLVINK-INVTMVFP 193 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g-~~Vtlv~~ 193 (479)
.+|+|||+|..|+-+|..|++.| .+|+++++
T Consensus 24 ~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~ 55 (448)
T 3axb_A 24 FDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDA 55 (448)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHCSCEEEEES
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 47999999999999999999999 99999998
No 466
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=87.33 E-value=0.55 Score=45.47 Aligned_cols=37 Identities=11% Similarity=0.062 Sum_probs=30.6
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
||+.++|.|||.|.-|...|..|++.|++ |+++++++
T Consensus 19 Mm~~mkIgiIGlG~mG~~~A~~L~~~G~~---V~v~dr~~ 55 (358)
T 4e21_A 19 YFQSMQIGMIGLGRMGADMVRRLRKGGHE---CVVYDLNV 55 (358)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred hhcCCEEEEECchHHHHHHHHHHHhCCCE---EEEEeCCH
Confidence 66678999999999999999999999876 88887763
No 467
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1
Probab=87.00 E-value=0.69 Score=43.95 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=30.5
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
+++|+|||+|..|.+.|..|+..+. ..+|+++|.++
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~~~~~-~~ev~L~Di~~ 42 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQT-ANELVLIDVFK 42 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTC-SSEEEEECCC-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCCh
Confidence 4799999999999999999999765 34699998764
No 468
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=86.97 E-value=0.48 Score=44.52 Aligned_cols=37 Identities=11% Similarity=-0.006 Sum_probs=30.4
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
|+.+++|.|||.|.-|...|..|++.|++ |+++++++
T Consensus 12 M~~~~~I~vIG~G~mG~~~A~~l~~~G~~---V~~~dr~~ 48 (296)
T 3qha_A 12 TTEQLKLGYIGLGNMGAPMATRMTEWPGG---VTVYDIRI 48 (296)
T ss_dssp ---CCCEEEECCSTTHHHHHHHHTTSTTC---EEEECSST
T ss_pred ccCCCeEEEECcCHHHHHHHHHHHHCCCe---EEEEeCCH
Confidence 33356899999999999999999999886 89988774
No 469
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=86.88 E-value=0.51 Score=40.61 Aligned_cols=33 Identities=15% Similarity=0.099 Sum_probs=30.2
Q ss_pred CCCEEEECCChHHHHHHHHHhhC-CCeEEEEeec
Q 011700 162 GGNAVVIGGGYIGMECAASLVIN-KINVTMVFPE 194 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~-g~~Vtlv~~~ 194 (479)
+.+++|+|.|.+|..++..|.+. |.+|++++++
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~ 72 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIR 72 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESC
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECC
Confidence 56899999999999999999999 9999998764
No 470
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Probab=86.74 E-value=0.7 Score=43.71 Aligned_cols=89 Identities=11% Similarity=0.050 Sum_probs=0.0
Q ss_pred CCEEEECCChHHHHHHHHHhhCCC-eEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEE
Q 011700 163 GNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAV 241 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v 241 (479)
.+|.|||.|.+|.-+|..|.+.|. +|+++.+.+ .+...+.+.+.|+.+ ...+.+.-.
T Consensus 25 ~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~-----------~~~~~~~~~~~g~~~--~~~~~e~~~--------- 82 (312)
T 3qsg_A 25 MKLGFIGFGEAASAIASGLRQAGAIDMAAYDAAS-----------AESWRPRAEELGVSC--KASVAEVAG--------- 82 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSC-----------HHHHHHHHHHTTCEE--CSCHHHHHH---------
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCC-----------CHHHHHHHHHCCCEE--eCCHHHHHh---------
Q ss_pred EeCCCcEEeccEEEEecCCCCChhhhhccccc-ccCcEEEc
Q 011700 242 NLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVT 281 (479)
Q Consensus 242 ~~~~g~~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd 281 (479)
.+|.|++++......+.++.-... ..+.+.+|
T Consensus 83 --------~aDvVi~~vp~~~~~~~~~~l~~~l~~~~ivvd 115 (312)
T 3qsg_A 83 --------ECDVIFSLVTAQAALEVAQQAGPHLCEGALYAD 115 (312)
T ss_dssp --------HCSEEEECSCTTTHHHHHHHHGGGCCTTCEEEE
T ss_pred --------cCCEEEEecCchhHHHHHHhhHhhcCCCCEEEE
No 471
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=86.17 E-value=0.77 Score=45.22 Aligned_cols=36 Identities=11% Similarity=0.166 Sum_probs=31.9
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
||..++|.|+|+|..|...+..+.++|++ +.+++ .+
T Consensus 21 mm~~~~I~ilGgG~lg~~l~~aa~~lG~~---v~~~d-~~ 56 (403)
T 3k5i_A 21 MWNSRKVGVLGGGQLGRMLVESANRLNIQ---VNVLD-AD 56 (403)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHHHTCE---EEEEE-ST
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEE-CC
Confidence 66678999999999999999999999997 78888 54
No 472
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=86.17 E-value=0.78 Score=43.86 Aligned_cols=33 Identities=21% Similarity=0.416 Sum_probs=29.2
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEE 39 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 39 (479)
.+++.|||+|.-|...|..|++.|++ |++++++
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~~---V~~~~r~ 35 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGEA---INVLARG 35 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTCC---EEEECCH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCE---EEEEECh
Confidence 47899999999999999999998876 8888764
No 473
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*
Probab=86.02 E-value=0.68 Score=45.58 Aligned_cols=34 Identities=21% Similarity=0.217 Sum_probs=29.7
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
..+|+|||+|.+|+.+|..|...|.+ |+++|+.+
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga~---V~v~D~~~ 205 (401)
T 1x13_A 172 PAKVMVIGAGVAGLAAIGAANSLGAI---VRAFDTRP 205 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCG
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCE---EEEEcCCH
Confidence 46899999999999999999998864 89988774
No 474
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=85.76 E-value=0.62 Score=43.63 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=29.3
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
+++.|||+|.-|.+.|..|++.|.+ |+++++++
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g~~---V~~~~r~~ 35 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSLPH---TTLIGRHA 35 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHCTT---CEEEESSC
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCe---EEEEEecc
Confidence 6899999999999999999998875 89998873
No 475
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Probab=85.67 E-value=0.79 Score=44.81 Aligned_cols=34 Identities=18% Similarity=0.123 Sum_probs=29.7
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
..+|+|||+|.+|+.++..+...|.+ |+++++.+
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga~---V~~~d~~~ 205 (384)
T 1l7d_A 172 PARVLVFGVGVAGLQAIATAKRLGAV---VMATDVRA 205 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCH
Confidence 46899999999999999999998864 89988774
No 476
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=85.53 E-value=0.67 Score=43.15 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=31.6
Q ss_pred CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc
Q 011700 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 196 (479)
Q Consensus 162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 196 (479)
-+++.|||+|.+|..+|..|++.|.+|+++++++.
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTD 38 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 36899999999999999999999999999987654
No 477
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=85.32 E-value=0.71 Score=45.60 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=31.0
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
+.+|+|||.|.-|...|..|.+.|.+ |++||.++
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~---vvvId~d~ 37 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVK---MVVLDHDP 37 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEECCH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCC---EEEEECCH
Confidence 46799999999999999999999887 99999884
No 478
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Probab=85.30 E-value=0.91 Score=43.09 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=31.8
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEE 39 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 39 (479)
|.++.+|+|||+|..|.+.|..|+..+. ..++.|+|.+
T Consensus 2 ~~~~~KI~IiGaG~vG~~~a~~l~~~~~-~~el~L~Di~ 39 (318)
T 1ez4_A 2 MPNHQKVVLVGDGAVGSSYAFAMAQQGI-AEEFVIVDVV 39 (318)
T ss_dssp BTTBCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHcCCC-CCEEEEEeCC
Confidence 5556899999999999999999988765 3568998875
No 479
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Probab=85.05 E-value=0.72 Score=43.18 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=29.2
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEE 39 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 39 (479)
|++++++.|||+|.-|...|..|.+.|++ |++++++
T Consensus 1 M~~~~~i~iiG~G~~G~~~a~~l~~~g~~---V~~~~~~ 36 (301)
T 3cky_A 1 MEKSIKIGFIGLGAMGKPMAINLLKEGVT---VYAFDLM 36 (301)
T ss_dssp ---CCEEEEECCCTTHHHHHHHHHHTTCE---EEEECSS
T ss_pred CCCCCEEEEECccHHHHHHHHHHHHCCCe---EEEEeCC
Confidence 77778999999999999999999998875 8888765
No 480
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=84.99 E-value=0.6 Score=41.66 Aligned_cols=33 Identities=30% Similarity=0.420 Sum_probs=28.2
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEE-EcCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCI-ISEE 39 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~l-ie~~ 39 (479)
.+++.|||+|.-|...|..|++.|++ |++ ++++
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~g~~---V~~v~~r~ 56 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAAQIP---AIIANSRG 56 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHTTCC---EEEECTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCE---EEEEECCC
Confidence 46899999999999999999998876 777 6655
No 481
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Probab=84.93 E-value=0.93 Score=43.28 Aligned_cols=36 Identities=17% Similarity=0.363 Sum_probs=32.0
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
..+|+|||+|-.|..+|..|++.|.. +++++|....
T Consensus 34 ~~~VlIvGaGGlGs~va~~La~aGVg--~ItlvD~D~V 69 (340)
T 3rui_A 34 NTKVLLLGAGTLGCYVSRALIAWGVR--KITFVDNGTV 69 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCC--EEEEECCCBC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCC--EEEEecCCEe
Confidence 46899999999999999999999864 5999998864
No 482
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=84.92 E-value=0.83 Score=45.67 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=30.2
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
++|.|||.|.-|+..|..|++.|++ |++++.++
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~~---V~~~D~~~ 35 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGAN---VRCIDTDR 35 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred CEEEEECcCHHHHHHHHHHHhcCCE---EEEEECCH
Confidence 6899999999999999999999886 89998874
No 483
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*
Probab=84.87 E-value=0.8 Score=42.83 Aligned_cols=36 Identities=31% Similarity=0.472 Sum_probs=31.8
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
..+|+|||+|-.|..+|..|++.|. ++++|+|.+..
T Consensus 36 ~~~VlVvGaGGlGs~va~~La~aGV--G~i~lvD~D~V 71 (292)
T 3h8v_A 36 TFAVAIVGVGGVGSVTAEMLTRCGI--GKLLLFDYDKV 71 (292)
T ss_dssp GCEEEEECCSHHHHHHHHHHHHHTC--SEEEEECCCBC
T ss_pred CCeEEEECcCHHHHHHHHHHHHcCC--CEEEEECCCcc
Confidence 4689999999999999999999985 46999998854
No 484
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=84.84 E-value=0.8 Score=40.62 Aligned_cols=37 Identities=22% Similarity=0.360 Sum_probs=30.3
Q ss_pred CCCcCeEEEECC-chHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 1 MGRAFVYVIVGG-GVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 1 M~~~~dvvIIGg-G~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
|+..++++|.|| |.-|...+..|.+.|++ |+++++.+
T Consensus 1 M~~m~~ilItGatG~iG~~l~~~L~~~g~~---V~~~~r~~ 38 (227)
T 3dhn_A 1 MEKVKKIVLIGASGFVGSALLNEALNRGFE---VTAVVRHP 38 (227)
T ss_dssp --CCCEEEEETCCHHHHHHHHHHHHTTTCE---EEEECSCG
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHCCCE---EEEEEcCc
Confidence 555578999996 99999999999998875 89988874
No 485
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=84.80 E-value=0.69 Score=46.55 Aligned_cols=36 Identities=14% Similarity=0.017 Sum_probs=31.8
Q ss_pred CcCeEEEECCchHHHHHHHHHHHc-CC-CCCcEEEEcCCCC
Q 011700 3 RAFVYVIVGGGVAAGYAALEFTKR-GV-PPGELCIISEEPV 41 (479)
Q Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~-g~-~~~~V~lie~~~~ 41 (479)
..++|.|||.|.-|+..|..|++. |+ + |+++|.++.
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~---V~~~D~~~~ 54 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFADAPCFEK---VLGFQRNSK 54 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHHSTTCCE---EEEECCCCT
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCCe---EEEEECChh
Confidence 346899999999999999999999 88 6 999998853
No 486
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Probab=84.77 E-value=0.58 Score=38.50 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=30.3
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 194 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~ 194 (479)
.+++++|||.|.+|..++..|...|.+|+++.|.
T Consensus 20 ~~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~ 53 (144)
T 3oj0_A 20 GGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRN 53 (144)
T ss_dssp CCCEEEEECCSHHHHHHGGGCCTTTCEEEEEESC
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 4789999999999999999999999998887664
No 487
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*
Probab=84.70 E-value=0.87 Score=43.28 Aligned_cols=39 Identities=23% Similarity=0.188 Sum_probs=29.1
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCCC-CCcEEEEcCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGVP-PGELCIISEE 39 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~-~~~V~lie~~ 39 (479)
||+.++|.|||+|.-|...|..|.+.|.. ..+|++++++
T Consensus 19 ~~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~ 58 (322)
T 2izz_A 19 YFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPD 58 (322)
T ss_dssp ---CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSC
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCC
Confidence 45567899999999999999999998831 1248888766
No 488
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=84.62 E-value=0.84 Score=41.70 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=31.7
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV 41 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~ 41 (479)
..+|+|||+|-.|..+|..|++.|.. +++|+|.+..
T Consensus 28 ~~~VlvvG~GglG~~va~~La~~Gvg--~i~lvD~d~v 63 (251)
T 1zud_1 28 DSQVLIIGLGGLGTPAALYLAGAGVG--TLVLADDDDV 63 (251)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTCS--EEEEECCCBC
T ss_pred cCcEEEEccCHHHHHHHHHHHHcCCC--eEEEEeCCCc
Confidence 46899999999999999999999865 5999998854
No 489
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Probab=84.48 E-value=0.97 Score=43.17 Aligned_cols=34 Identities=12% Similarity=0.223 Sum_probs=29.5
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
++|.|||+|.-|.+.|..|++.|+- +|+++|.++
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~g~~--~V~L~D~~~ 43 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALRELA--DVVLYDVVK 43 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCC--EEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC--eEEEEECCh
Confidence 5899999999999999999998872 299998874
No 490
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=84.35 E-value=1.9 Score=43.16 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=53.5
Q ss_pred CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 240 (479)
Q Consensus 161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~ 240 (479)
.+++++|||+|.+|...+..|.+.|.+|+++.+. +.+++. +..++.+++++.+.. +
T Consensus 11 ~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~-------~~~~~~----~l~~~~~i~~~~~~~----~--------- 66 (457)
T 1pjq_A 11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT-------FIPQFT----VWANEGMLTLVEGPF----D--------- 66 (457)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS-------CCHHHH----HHHTTTSCEEEESSC----C---------
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC-------CCHHHH----HHHhcCCEEEEECCC----C---------
Confidence 4789999999999999999999999999999764 344432 223345676664321 1
Q ss_pred EEeCCCcEEeccEEEEecCCCC-Chhhh
Q 011700 241 VNLRDGNRLPTDMVVVGIGIRP-NTSLF 267 (479)
Q Consensus 241 v~~~~g~~i~~D~Vi~a~G~~p-~~~l~ 267 (479)
.+.--.+|+|+.++|... |..+.
T Consensus 67 ----~~~l~~~~lVi~at~~~~~n~~i~ 90 (457)
T 1pjq_A 67 ----ETLLDSCWLAIAATDDDTVNQRVS 90 (457)
T ss_dssp ----GGGGTTCSEEEECCSCHHHHHHHH
T ss_pred ----ccccCCccEEEEcCCCHHHHHHHH
Confidence 000114789999998763 44433
No 491
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=84.29 E-value=0.81 Score=45.87 Aligned_cols=34 Identities=26% Similarity=0.212 Sum_probs=30.7
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
.++|+|||+|..|...+..|.+.|.+ |++++++.
T Consensus 12 ~~~vlVvGgG~va~~k~~~L~~~ga~---V~vi~~~~ 45 (457)
T 1pjq_A 12 DRDCLIVGGGDVAERKARLLLEAGAR---LTVNALTF 45 (457)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBE---EEEEESSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCcCE---EEEEcCCC
Confidence 57899999999999999999998876 99999864
No 492
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=84.21 E-value=1.2 Score=44.66 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=31.5
Q ss_pred CCCcCeEEEECCchHHHHHHHHHHHcCC-CCCcEEEEcCCCC
Q 011700 1 MGRAFVYVIVGGGVAAGYAALEFTKRGV-PPGELCIISEEPV 41 (479)
Q Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~-~~~~V~lie~~~~ 41 (479)
|.+.+||+|||||++|+++|..|++.|. + |+|+|+.+.
T Consensus 1 ~~~~~~~~iiG~G~~g~~~a~~l~~~g~~~---v~~~e~~~~ 39 (472)
T 1b37_A 1 ATVGPRVIVVGAGMSGISAAKRLSEAGITD---LLILEATDH 39 (472)
T ss_dssp ----CCEEEECCBHHHHHHHHHHHHTTCCC---EEEECSSSS
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhcCCCc---eEEEeCCCC
Confidence 3457899999999999999999999887 5 999999864
No 493
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=84.19 E-value=0.94 Score=42.51 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=28.7
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEE 39 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 39 (479)
+++.|||+|.-|...|..|++.|++ |++++++
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~---V~~~~r~ 35 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGND---VTLIDQW 35 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCE---EEEECSC
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCc---EEEEECC
Confidence 5899999999999999999998875 8888776
No 494
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*
Probab=84.11 E-value=0.97 Score=42.75 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=29.6
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
++|+|||+|.-|...|..|++.|+ ..+|++++.++
T Consensus 8 mkI~IiGaG~vG~~~a~~l~~~g~-~~~V~l~d~~~ 42 (319)
T 1lld_A 8 TKLAVIGAGAVGSTLAFAAAQRGI-AREIVLEDIAK 42 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCCh
Confidence 689999999999999999999876 12499998763
No 495
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*
Probab=83.81 E-value=1.1 Score=42.37 Aligned_cols=34 Identities=12% Similarity=0.207 Sum_probs=29.1
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
++|.|||+|..|...|..|+..|+- +|+++|.++
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g~~--~v~L~Di~~ 36 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKELG--DIVLLDIVE 36 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCC--eEEEEeCCc
Confidence 6899999999999999999988752 299998763
No 496
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=83.67 E-value=1 Score=42.66 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=30.3
Q ss_pred CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
.+|.|||+|.-|..-|..+++.|++ |+++|.++
T Consensus 7 ~~VaViGaG~MG~giA~~~a~~G~~---V~l~D~~~ 39 (319)
T 3ado_A 7 GDVLIVGSGLVGRSWAMLFASGGFR---VKLYDIEP 39 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCC---EEEECSCH
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCe---EEEEECCH
Confidence 5799999999999999999999998 99999875
No 497
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}
Probab=83.62 E-value=1.3 Score=41.76 Aligned_cols=34 Identities=12% Similarity=0.094 Sum_probs=29.5
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
.+++.|||+|.-|...|..|.+.|++ |+++++++
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~g~~---V~~~~~~~ 63 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKMGHT---VTVWNRTA 63 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCC---EEEECSSG
T ss_pred CCeEEEEcccHHHHHHHHHHHhCCCE---EEEEeCCH
Confidence 47899999999999999999998875 88887763
No 498
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...
Probab=83.37 E-value=1 Score=47.10 Aligned_cols=35 Identities=29% Similarity=0.251 Sum_probs=31.7
Q ss_pred CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 197 (479)
Q Consensus 163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 197 (479)
-.++|||+|..|+.+|..|++.|.+|+++++.+..
T Consensus 47 ~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~ 81 (623)
T 3pl8_A 47 YDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID 81 (623)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCC
Confidence 46999999999999999999999999999987643
No 499
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A
Probab=83.35 E-value=1.1 Score=43.32 Aligned_cols=34 Identities=29% Similarity=0.241 Sum_probs=29.6
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
..+|+|+|+|.+|..++..|+..|.+ |+++++++
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~Ga~---V~v~dr~~ 200 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGLGAQ---VQIFDINV 200 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCE---EEEEeCCH
Confidence 36899999999999999999998874 89988763
No 500
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=83.35 E-value=1.4 Score=40.75 Aligned_cols=34 Identities=18% Similarity=0.094 Sum_probs=30.0
Q ss_pred cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700 4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP 40 (479)
Q Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~ 40 (479)
+++|+|.|+|.-|...+..|.+.|++ |+++++.+
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~~g~~---V~~~~r~~ 36 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQGHE---VTGLRRSA 36 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCC---EEEEECTT
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCc
Confidence 46899999999999999999998886 88888764
Done!