BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011701
(479 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CC1|A Chain A, Crystal Structure Of A Putative
Alpha-N-Acetylgalactosaminidase (Bh1870) From Bacillus
Halodurans C-125 At 2.00 A Resolution
pdb|3CC1|B Chain B, Crystal Structure Of A Putative
Alpha-N-Acetylgalactosaminidase (Bh1870) From Bacillus
Halodurans C-125 At 2.00 A Resolution
Length = 433
Score = 216 bits (549), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 137/404 (33%), Positives = 201/404 (49%), Gaps = 26/404 (6%)
Query: 33 AILPPRGWNSYDSFCWIISEQDFLQSADIVAKRLLPHGYEYVVVDYLWYRKKVKDAHIDS 92
A+ PP GWNS+D + ++E++ L +A+ A L +G+EY+VVD WY + +
Sbjct: 9 ALTPPXGWNSWDCYGASVTEEEVLGNAEYXANHLKKYGWEYIVVDIQWYEPTANSSAYNP 68
Query: 93 EGIDLIDEWGRMVPDPDRWPSSKGGKGFTEVAKKVHDMGLKFGIHVMKGISNQAVNANTL 152
DE+GR++P +R+PS+K G GF ++ +HD+GLKFGIH+ +GI QAV N+
Sbjct: 69 FAPLCXDEYGRLLPATNRFPSAKNGAGFKPLSDAIHDLGLKFGIHIXRGIPRQAVYENSP 128
Query: 153 IYDYDKKGPYTEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGRAFLRSLHKQYADW 212
+ K A++IA C W + TK GA +++ SL + YA W
Sbjct: 129 VLGSTKT-----------AREIAHTNSICPWNTDXYGVDPTKEGA-QSYYNSLFELYAQW 176
Query: 213 SVDFVKHDCAFGDDLDEGEISVVSEVFKGEH--NRPIIYSLSPGTSAAPDMAQKINGLAN 270
VDFVK D L + + + + + RP + SLSPG A A AN
Sbjct: 177 GVDFVKVDDIAASRLYDTHLEEIKXIQRAIQACGRPXVLSLSPG-PAPIKYAHHFKTNAN 235
Query: 271 MYRVTGDDWDSWPDVAAHFSVARDFAAANMIGSQGLKGRSWPDLDMLPLGWLTDANSTQG 330
+R+T D WD W + F + + + WPD LPLG + S G
Sbjct: 236 XWRITDDFWDDWSLLYQXFERCE-------VWEKHIGTGHWPDCGXLPLGHI-GIRSVDG 287
Query: 331 PY--RACKLTLDEQKTQMTLWAMAKSPLMFGGDVRKLDDTTYGLITNPTILEIDHYSSNN 388
P R + T DEQ T LWA+ SPL FGG++R D+ T L+TN IL I+ S N
Sbjct: 288 PGGDRWTRFTKDEQLTXXNLWAICHSPLXFGGELRDNDEWTLSLLTNEGILSINQKSVLN 347
Query: 389 KDAGANATGVRSWIATGRQGEIYLAFFNLNNAKTAISAEIADLG 432
+ V +W A GR GE Y+A FNL++ + + + +G
Sbjct: 348 RFVYREEDKV-AWAANGRNGEAYVALFNLHDQQKTLQFRLDXVG 390
>pdb|1UAS|A Chain A, Crystal Structure Of Rice Alpha-Galactosidase
Length = 362
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 102/444 (22%), Positives = 169/444 (38%), Gaps = 96/444 (21%)
Query: 36 PPRGWNSYDSFCWIISEQDFLQSAD-IVAKRLLPHGYEYVVVDYLWYRKKVKDAHIDSEG 94
P GWNS++ F I+EQ ++AD +V L GY+YV +D W
Sbjct: 9 PQMGWNSWNHFYCGINEQIIRETADALVNTGLAKLGYQYVNIDDCWAEYSR--------- 59
Query: 95 IDLIDEWGRMVPDPDRWPSSKGGKGFTEVAKKVHDMGLKFGIHVMKGISNQAVNANTLIY 154
D G VP+ +PS G +A VH GLK GI
Sbjct: 60 ----DSQGNFVPNRQTFPS-----GIKALADYVHAKGLKLGI------------------ 92
Query: 155 DYDKKGPYTEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGRAFLRSLHKQYADWSV 214
Y++AG Q + K+ K +A W V
Sbjct: 93 -------YSDAGSQ---------------------TCSNKMPGSLDHEEQDVKTFASWGV 124
Query: 215 DFVKHD-CAFGDDLDEGEISVVSEVFKGEHNRPIIYSLSPGTSAAPDMAQKINGLANMYR 273
D++K+D C + +S K + + I +SL P A + N +R
Sbjct: 125 DYLKYDNCNDAGRSVMERYTRMSNAMK-TYGKNIFFSLCEWGKENP--ATWAGRMGNSWR 181
Query: 274 VTGDDWDSWPDVAAHFSVARDFAAANMIGSQGLKGRSWPDLDMLPLGWLTDANSTQGPYR 333
TGD D+W + + +AA G W D DML +G + ++ YR
Sbjct: 182 TTGDIADNWGSMTSRADENDQWAAYAGPGG-------WNDPDMLEVG---NGGMSEAEYR 231
Query: 334 ACKLTLDEQKTQMTLWAMAKSPLMFGGDVRKLDDTTYGLITNPTILEIDHYSSNNKDAGA 393
+ ++WA+AK+PL+ G DVR + T +++N ++ ++ S +
Sbjct: 232 ----------SHFSIWALAKAPLLIGCDVRSMSQQTKNILSNSEVIAVNQDSLGVQGKKV 281
Query: 394 NA-TGVRSWIATGRQGEIYLAFFNLNNAKTAISAEIADLGKALPGWKLNPSCKGTEIWSG 452
+ G+ W + +N + + I+A +++G L G + + ++W+
Sbjct: 282 QSDNGLEVWAGPLSNNRKAVVLWNRQSYQATITAHWSNIG--LAG---SVAVTARDLWAH 336
Query: 453 KDFGVMQKSVSTEVETHGCALFVL 476
F Q +S V H C ++VL
Sbjct: 337 SSFAA-QGQISASVAPHDCKMYVL 359
>pdb|3A5V|A Chain A, Crystal Structure Of Alpha-Galactosidase I From
Mortierella Vinacea
Length = 397
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 111/476 (23%), Positives = 183/476 (38%), Gaps = 127/476 (26%)
Query: 33 AILPPRGWNSYDSFCWIISEQDFLQSADIVAKRLLPH-GYEYVVVDYLWYRKKVKDAHID 91
AI P GWN+++ + + EQ L +A +A L GY YV++D W + + + +
Sbjct: 6 AITPQMGWNTWNKYGCNVDEQLILDAAKAIASSGLKDLGYNYVIIDDCWQKNERESSKT- 64
Query: 92 SEGIDLIDEWGRMVPDPDRWPSSKGGKGFTEVAKKVHDMGLKFGIHVMKGISNQAVNANT 151
++ DP ++P +G + +H++GLK GI
Sbjct: 65 ------------LLADPTKFP-----RGIKPLVDDIHNLGLKAGI--------------- 92
Query: 152 LIYDYDKKGPYTEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGRAFLRSLHKQYAD 211
Y+ AG IA G+ ++ K +A
Sbjct: 93 ----------YSSAGTLTCGGHIA---------SLGYEDIDAK-------------TWAK 120
Query: 212 WSVDFVKHDCAFGDDLDEGEISVVSEVFKGEHN------RPIIYSLSPGTSAAP-DMAQK 264
W +D++K+D + G + + +K N RP++YSL P + A
Sbjct: 121 WGIDYLKYDNCYNQG-QSGTPKLSYDRYKAMGNALNKTGRPMLYSLCNWGEDGPWNFAST 179
Query: 265 INGLANMYRVTGDDWDSW--PDVAA----HFSVARDF--AAANMIG-----SQGLKGRSW 311
I +N +R++GD +D++ PD A + V F + N+I SQ + W
Sbjct: 180 I---SNSWRISGDVYDNFNRPDPACPCTTYDCVLAGFRCSVMNIINKAVAVSQKARSGGW 236
Query: 312 PDLDMLPLGWLTDANSTQGPYRACKLTLDEQKTQMTLWAMAKSPLMFGGDVRKLDDTTYG 371
DLDML +G + Q YR T+WA KSPL+ G DV + +TT
Sbjct: 237 NDLDMLEVG---NGGMNQEEYRV----------HYTIWAALKSPLILGNDVTNITNTTKE 283
Query: 372 LITNPTILEIDHYSSNNKDAGANATGVRSWIATGRQGEIYLAFFNL-NNAKTAISAEIAD 430
+I N ++ ++ SS + R W+ +G+ L NL NN + I D
Sbjct: 284 IIMNKEVIAVNQDSS-------FSPANRIWV----KGDQQLFSGNLANNTQVVILLNAGD 332
Query: 431 LGKA------------LPGWKLNPSCKGTEIWSGKDFGVMQKSVSTEVETHGCALF 474
LP + S + ++W K G ++ +V HG L
Sbjct: 333 SAAKMTATWDDIWVYNLPNVDSSRSIEVRDLWKQKSLGNFSNHITLDVPAHGVRLL 388
>pdb|1SZN|A Chain A, The Structure Of Alpha-Galactosidase
pdb|1T0O|A Chain A, The Structure Of Alpha-Galactosidase From Trichoderma
Reesei Complexed With Beta-D-Galactose
Length = 417
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 110/489 (22%), Positives = 173/489 (35%), Gaps = 130/489 (26%)
Query: 35 LPPRGWNSYDSFCWIISEQDFLQSAD-IVAKRLLPHGYEYVVVDYLWYRKKVKDAHIDSE 93
+P GWNS++++ I E FL +A+ IV+ LL GY YV +D W +KD +D
Sbjct: 11 VPSLGWNSWNAYHCDIDESKFLSAAELIVSSGLLDAGYNYVNIDDCW---SMKDGRVD-- 65
Query: 94 GIDLIDEWGRMVPDPDRWPSSKGGKGFTEVAKKVHDMGLKFGIHVMKGISNQAVNANTLI 153
G + P+ R+P G +AKKVH +GLK GI+ G + A +L
Sbjct: 66 --------GHIAPNATRFP-----DGIDGLAKKVHALGLKLGIYSTAGTATCAGYPASLG 112
Query: 154 YDYDKKGPYTEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGRAFLRSLHKQYADWS 213
Y +D+ + +ADW
Sbjct: 113 Y-----------------EDVDAAD------------------------------FADWG 125
Query: 214 VDFVKHD-CAFGDDLDEGEISVVSEVFKGEHNRPIIYSLSPGTSAAPD------------ 260
VD++K+D C D + ++ + K N +L P T A P
Sbjct: 126 VDYLKYDNCNVPSDWQDEYVACNPDFVKTGPNGTCTTALDP-TLAPPGYDWSTSKSAERF 184
Query: 261 ---------------MAQKINGLANMY---RVTGDDWDSWPDVAAHFSVARDFAAANMIG 302
++ I G A+++ TG W D++ ++ N
Sbjct: 185 GAMRNALAKQSHEIVLSMCIWGQADVFSWGNSTGISWRMSDDISPNWGSVTRILNLNSFK 244
Query: 303 SQGLKGRSWPDLDMLPLGWLTDANSTQGPYRACKLTLDEQKTQMTLWAMAKSPLMFGGDV 362
+ D DML +G LT E +T LWA KSPL+ G D+
Sbjct: 245 LNSVDFWGHNDADMLEVG-------------NGNLTAAETRTHFALWAAMKSPLLIGTDL 291
Query: 363 RKLDDTTYGLITNPTILEIDHYSSNNKDAGANATGVRS------------WIATGRQGEI 410
+L L+ N +L + S + A G+ W +G +
Sbjct: 292 AQLSQNNINLLKNKHLLAFNQDSVYGQPATPYKWGINPDWTFNVTYPAEFWAGPSSKGHL 351
Query: 411 YLAFFNLNNAKTAISAEIADLGKALPGWKLNPSCKGTEIWSGKDFGVMQKSVSTEVETHG 470
L L+ I+A +PG + ++WS KD G + S V H
Sbjct: 352 VLMVNTLD-----ITATKEAKWNEIPGLSAG-HYEVRDVWSDKDLGCLS-SYKAAVAAHD 404
Query: 471 CALFVLNCK 479
A+ ++ K
Sbjct: 405 TAVILVGKK 413
>pdb|1KTB|A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase
pdb|1KTC|A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase
Length = 405
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 91/373 (24%), Positives = 145/373 (38%), Gaps = 101/373 (27%)
Query: 29 ETEHAILPPRGWNSYDSF-CWI---------ISEQDFLQSADIVAK---RLLPHGYEYVV 75
E A PP GW +++ F C + ISE F++ AD +A+ R L GY+Y+
Sbjct: 2 ENGLARTPPMGWLAWERFRCNVNCREDPRQCISEMLFMEMADRIAEDGWREL--GYKYIN 59
Query: 76 VDYLWYRKKVKDAHIDSEGIDLIDEWGRMVPDPDRWPSSKGGKGFTEVAKKVHDMGLKFG 135
+D W K+ +DA GR+VPDP+R+P +G +A VH GLK G
Sbjct: 60 IDDCWAAKQ-RDAE------------GRLVPDPERFP-----RGIKALADYVHARGLKLG 101
Query: 136 IHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKL 195
I Y + GR C P
Sbjct: 102 I-------------------------YGDLGR-----------LTCGGYP---------- 115
Query: 196 GAGRAFLRSLHKQYADWSVDFVKHDCAFGDDLDEGEISVVSEVFKGEHNRPIIYSLS-PG 254
G + + +A+W VD +K D + ++ + RPI+YS S P
Sbjct: 116 GTTLDRVEQDAQTFAEWGVDMLKLDGCYSSGKEQAQGYPQMARALNATGRPIVYSCSWPA 175
Query: 255 TSAA--PDMAQKING-LANMYRVTGDDWDSWPDVAAHFSVARDFAAANMIGSQGLKGRS- 310
P + + G + N++R D DSW V + D+ N Q G
Sbjct: 176 YQGGLPPKVNYTLLGEICNLWRNYDDIQDSWDSVLSIV----DWFFTNQDVLQPFAGPGH 231
Query: 311 WPDLDMLPLGWLTDANSTQGPYRACKLTLDEQKTQMTLWAMAKSPLMFGGDVRKLDDTTY 370
W D DML +G L+ ++ ++QM LW + +PL+ D+R + +
Sbjct: 232 WNDPDMLIIG-------------NFGLSYEQSRSQMALWTIMAAPLLMSTDLRTISPSAK 278
Query: 371 GLITNPTILEIDH 383
++ N +++I+
Sbjct: 279 KILQNRLMIQINQ 291
>pdb|3H53|A Chain A, Crystal Structure Of Human Alpha-N-Acetylgalactosaminidase
pdb|3H53|B Chain B, Crystal Structure Of Human Alpha-N-Acetylgalactosaminidase
pdb|3H54|A Chain A, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase,Complex With Galnac
pdb|3H54|B Chain B, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase,Complex With Galnac
pdb|3H55|A Chain A, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase, Complex With Galactose
pdb|3H55|B Chain B, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase, Complex With Galactose
pdb|3IGU|A Chain A, Crystal Structure Of Human
Alpha-n-acetylgalactosaminidase, Covalent Intermediate
pdb|3IGU|B Chain B, Crystal Structure Of Human
Alpha-n-acetylgalactosaminidase, Covalent Intermediate
pdb|4DO4|A Chain A, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO4|B Chain B, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO5|A Chain A, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO5|B Chain B, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO6|A Chain A, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO6|B Chain B, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
Length = 400
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/363 (23%), Positives = 133/363 (36%), Gaps = 96/363 (26%)
Query: 36 PPRGWNSYDSF-CWI---------ISEQDFLQSADIVAKR-LLPHGYEYVVVDYLWYRKK 84
PP GW +++ F C I ISEQ F++ AD +A+ GY Y+ +D W +
Sbjct: 9 PPMGWLAWERFRCNINCDEDPKNCISEQLFMEMADRMAQDGWRDMGYTYLNIDDCWIGGR 68
Query: 85 VKDAHIDSEGIDLIDEWGRMVPDPDRWPSSKGGKGFTEVAKKVHDMGLKFGIHVMKGISN 144
D GR++PDP R+P G +A VH +GLK GI
Sbjct: 69 --------------DASGRLMPDPKRFP-----HGIPFLADYVHSLGLKLGI-------- 101
Query: 145 QAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGRAFLRS 204
Y G +T G D +++
Sbjct: 102 -----------YADMGNFTCMGYPGTTLDKVVQDA------------------------- 125
Query: 205 LHKQYADWSVDFVKHDCAFGDDLDEGEISVVSEVFKGEHNRPIIYSLS-PGTSAA-PDMA 262
+ +A+W VD +K D F + + RPI +S S P P
Sbjct: 126 --QTFAEWKVDMLKLDGCFSTPEERAQGYPKMAAALNATGRPIAFSCSWPAYEGGLPPRV 183
Query: 263 QK--INGLANMYRVTGDDWDSWPDVAAHFSVARDFAAANMIGSQGLKGRSWPDLDMLPLG 320
Q + + N++R D DSW V S+ F I W D DML +G
Sbjct: 184 QYSLLADICNLWRNYDDIQDSWWSV---LSILNWFVEHQDILQPVAGPGHWNDPDMLLIG 240
Query: 321 WLTDANSTQGPYRACKLTLDEQKTQMTLWAMAKSPLMFGGDVRKLDDTTYGLITNPTILE 380
L+L++ + QM LW + +PL+ D+R + ++ NP +++
Sbjct: 241 -------------NFGLSLEQSRAQMALWTVLAAPLLMSTDLRTISAQNMDILQNPLMIK 287
Query: 381 IDH 383
I+
Sbjct: 288 INQ 290
>pdb|3LRK|A Chain A, Structure Of Alfa-Galactosidase (Mel1) From Saccharomyces
Cerevisiae
pdb|3LRL|A Chain A, Structure Of Alfa-Galactosidase (Mel1) From Saccharomyces
Cerevisiae With Melibiose
Length = 479
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 91/382 (23%), Positives = 149/382 (39%), Gaps = 116/382 (30%)
Query: 33 AILPPRGWNSYDSFCWIISEQDFLQSADIVAKR-LLPHGYEYVVVDYLWYRKKVKDAHID 91
+ P GW+++++F +SEQ L +AD ++ L GY+Y+++D W + D
Sbjct: 27 GLTPQMGWDNWNTFACDVSEQLLLDTADRISDLGLKDMGYKYIILDDCWSSGR------D 80
Query: 92 SEGIDLIDEWGRMVPDPDRWPSSKGGKGFTEVAKKVHDMGLKFGIHVMKGISNQAVNANT 151
S+G +V D ++P+ G VA +H+ FG+
Sbjct: 81 SDGF--------LVADEQKFPNGMG-----HVADHLHNNSFLFGM--------------- 112
Query: 152 LIYDYDKKGPYTEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGRAFLRSLHKQYAD 211
Y G YT CA P GR + +A+
Sbjct: 113 ----YSSAGEYT-----------------CAGYPGSL---------GRE--EEDAQFFAN 140
Query: 212 WSVDFVKHD-CAFGDDLDEGEIS-----VVSEVFKGEHNRPIIYSLSPGTSAAPDMAQKI 265
VD++K+D C EIS +S+ + RP+ YSL + Q +
Sbjct: 141 NRVDYLKYDNCYNKGQFGTPEISYHRYKAMSDALN-KTGRPVFYSLC-------NWGQDL 192
Query: 266 -----NGLANMYRVTGD--------------DWDSWPDVAA--HFSVARDFAAANMIGSQ 304
+G+AN +R++GD D D + A H S+ A +G
Sbjct: 193 TFYWGSGIANSWRMSGDVTAEFTRPDSRCPCDGDEYDCKYAGFHCSIMNILNKAAPMGQN 252
Query: 305 GLKGRSWPDLDMLPLGWLTDANSTQGPYRACKLTLDEQKTQMTLWAMAKSPLMFGGDVRK 364
G W DLD L +G LT DE+K ++WAM KSPL+ G +V
Sbjct: 253 AGVG-GWNDLDNLEVG-------------VGNLTDDEEKAHFSMWAMVKSPLIIGANVNN 298
Query: 365 LDDTTYGLITNPTILEIDHYSS 386
L ++Y + + +++ I+ S+
Sbjct: 299 LKASSYSIYSQASVIAINQDSN 320
>pdb|3LRM|A Chain A, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
pdb|3LRM|B Chain B, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
pdb|3LRM|C Chain C, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
pdb|3LRM|D Chain D, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
Length = 479
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 90/382 (23%), Positives = 149/382 (39%), Gaps = 116/382 (30%)
Query: 33 AILPPRGWNSYDSFCWIISEQDFLQSADIVAKR-LLPHGYEYVVVDYLWYRKKVKDAHID 91
+ P GW+++++F +SEQ L +AD ++ L GY+Y+++D W + D
Sbjct: 27 GLTPQMGWDNWNTFACDVSEQLLLDTADRISDLGLKDMGYKYIILDDCWSSGR------D 80
Query: 92 SEGIDLIDEWGRMVPDPDRWPSSKGGKGFTEVAKKVHDMGLKFGIHVMKGISNQAVNANT 151
S+G +V D ++P+ G VA +H+ FG+
Sbjct: 81 SDGF--------LVADEQKFPNGMG-----HVADHLHNNSFLFGM--------------- 112
Query: 152 LIYDYDKKGPYTEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGRAFLRSLHKQYAD 211
Y G YT CA P GR + +A+
Sbjct: 113 ----YSSAGEYT-----------------CAGYPGSL---------GRE--EEDAQFFAN 140
Query: 212 WSVDFVKH-DCAFGDDLDEGEIS-----VVSEVFKGEHNRPIIYSLSPGTSAAPDMAQKI 265
VD++K+ +C EIS +S+ + RP+ YSL + Q +
Sbjct: 141 NRVDYLKYANCYNKGQFGTPEISYHRYKAMSDALN-KTGRPVFYSLC-------NWGQDL 192
Query: 266 -----NGLANMYRVTGD--------------DWDSWPDVAA--HFSVARDFAAANMIGSQ 304
+G+AN +R++GD D D + A H S+ A +G
Sbjct: 193 TFYWGSGIANSWRMSGDVTAEFTRPDSRCPCDGDEYDCKYAGFHCSIMNILNKAAPMGQN 252
Query: 305 GLKGRSWPDLDMLPLGWLTDANSTQGPYRACKLTLDEQKTQMTLWAMAKSPLMFGGDVRK 364
G W DLD L +G LT DE+K ++WAM KSPL+ G +V
Sbjct: 253 AGVG-GWNDLDNLEVG-------------VGNLTDDEEKAHFSMWAMVKSPLIIGANVNN 298
Query: 365 LDDTTYGLITNPTILEIDHYSS 386
L ++Y + + +++ I+ S+
Sbjct: 299 LKASSYSIYSQASVIAINQDSN 320
>pdb|3LX9|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LX9|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXA|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXA|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXB|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXB|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXC|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXC|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
Length = 404
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 83/344 (24%), Positives = 128/344 (37%), Gaps = 96/344 (27%)
Query: 50 ISEQDFLQSADI-VAKRLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMVPDP 108
ISE+ F++ A++ V++ GYEY+ +D W + DSEG R+ DP
Sbjct: 33 ISEKLFMEMAELMVSEGWKDAGYEYLCIDDCWMAPQR-----DSEG--------RLQADP 79
Query: 109 DRWPSSKGGKGFTEVAKKVHDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQ 168
R+P G ++A VH GLK GI Y + G
Sbjct: 80 QRFP-----HGIRQLANYVHSKGLKLGI-------------------------YADVG-- 107
Query: 169 WRAQDIAIKEKPCAWMPHGFMAVNTKLGAGRAFLRSLHKQYADWSVDFVKHDCAFGDDLD 228
K CA P F + + +ADW VD +K D + D L+
Sbjct: 108 ---------NKTCAGFPGSFGYYDID-----------AQTFADWGVDLLKFDGCYCDSLE 147
Query: 229 EGEISVVSEVFK------GEHNRPIIYSLSPGTSAAPDMA---QKINGLANMYRVTGDDW 279
+++ +K R I+YS S P +I N +R D
Sbjct: 148 N-----LADGYKHMSLALNRTGRSIVYSCSWPAYMWPFQKPNYTEIRQYCNHWRNFADID 202
Query: 280 DSWPDVAAHFSVARDFAAANMIGSQGLKGRSWPDLDMLPLGWLTDANSTQGPYRACKLTL 339
DSW + + F ++ G G W D DML +G L+
Sbjct: 203 DSWKSIKSILDWT-SFNQERIVDVAGPGG--WNDPDMLVIG-------------NFGLSW 246
Query: 340 DEQKTQMTLWAMAKSPLMFGGDVRKLDDTTYGLITNPTILEIDH 383
++Q TQM LWA+ +PL D+R + L+ + ++ I+
Sbjct: 247 NQQVTQMALWAIMAAPLFMSNDLRHISPQAKALLQDKDVIAINQ 290
>pdb|1R46|A Chain A, Structure Of Human Alpha-galactosidase
pdb|1R46|B Chain B, Structure Of Human Alpha-galactosidase
pdb|1R47|A Chain A, Structure Of Human Alpha-Galactosidase
pdb|1R47|B Chain B, Structure Of Human Alpha-Galactosidase
pdb|3GXN|A Chain A, Crystal Structure Of Apo Alpha-Galactosidase A At Ph 4.5
pdb|3GXN|B Chain B, Crystal Structure Of Apo Alpha-Galactosidase A At Ph 4.5
pdb|3GXP|A Chain A, Crystal Structure Of Acid-alpha-galactosidase A Complexed
With Galactose At Ph 4.5
pdb|3GXP|B Chain B, Crystal Structure Of Acid-alpha-galactosidase A Complexed
With Galactose At Ph 4.5
pdb|3GXT|A Chain A, Crystal Structure Of Alpha-Galactosidase A At Ph 4.5
Complexed With 1- Deoxygalactonijirimycin
pdb|3GXT|B Chain B, Crystal Structure Of Alpha-Galactosidase A At Ph 4.5
Complexed With 1- Deoxygalactonijirimycin
pdb|3HG2|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 1. Empty
Active Site
pdb|3HG2|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 1. Empty
Active Site
pdb|3HG4|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 3. Covalent
Intermediate
pdb|3HG4|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 3. Covalent
Intermediate
pdb|3HG5|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 4. Product
Bound
pdb|3HG5|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 4. Product
Bound
pdb|3S5Y|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Y|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Z|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Z|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
Length = 398
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 127/344 (36%), Gaps = 96/344 (27%)
Query: 50 ISEQDFLQSADI-VAKRLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMVPDP 108
ISE+ F++ A++ V++ GYEY+ +D W + DSEG R+ DP
Sbjct: 33 ISEKLFMEMAELMVSEGWKDAGYEYLCIDDCWMAPQR-----DSEG--------RLQADP 79
Query: 109 DRWPSSKGGKGFTEVAKKVHDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQ 168
R+P G ++A VH GLK GI Y + G
Sbjct: 80 QRFP-----HGIRQLANYVHSKGLKLGI-------------------------YADVG-- 107
Query: 169 WRAQDIAIKEKPCAWMPHGFMAVNTKLGAGRAFLRSLHKQYADWSVDFVKHDCAFGDDLD 228
K CA P F + + +ADW VD +K D + D L+
Sbjct: 108 ---------NKTCAGFPGSFGYYDID-----------AQTFADWGVDLLKFDGCYCDSLE 147
Query: 229 EGEISVVSEVFK------GEHNRPIIYSLSPGTSAAPDMA---QKINGLANMYRVTGDDW 279
+++ +K R I+YS P +I N +R D
Sbjct: 148 N-----LADGYKHMSLALNRTGRSIVYSCEWPLYMWPFQKPNYTEIRQYCNHWRNFADID 202
Query: 280 DSWPDVAAHFSVARDFAAANMIGSQGLKGRSWPDLDMLPLGWLTDANSTQGPYRACKLTL 339
DSW + + F ++ G G W D DML +G L+
Sbjct: 203 DSWKSIKSILDWT-SFNQERIVDVAGPGG--WNDPDMLVIG-------------NFGLSW 246
Query: 340 DEQKTQMTLWAMAKSPLMFGGDVRKLDDTTYGLITNPTILEIDH 383
++Q TQM LWA+ +PL D+R + L+ + ++ I+
Sbjct: 247 NQQVTQMALWAIMAAPLFMSNDLRHISPQAKALLQDKDVIAINQ 290
>pdb|3HG3|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 2. Substrate
Bound
pdb|3HG3|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 2. Substrate
Bound
pdb|3TV8|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3TV8|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
Length = 404
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 126/344 (36%), Gaps = 96/344 (27%)
Query: 50 ISEQDFLQSADI-VAKRLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMVPDP 108
ISE+ F++ A++ V++ GYEY+ +D W + DSEG R+ DP
Sbjct: 33 ISEKLFMEMAELMVSEGWKDAGYEYLCIDDCWMAPQR-----DSEG--------RLQADP 79
Query: 109 DRWPSSKGGKGFTEVAKKVHDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQ 168
R+P G ++A VH GLK GI Y + G
Sbjct: 80 QRFP-----HGIRQLANYVHSKGLKLGI-------------------------YADVG-- 107
Query: 169 WRAQDIAIKEKPCAWMPHGFMAVNTKLGAGRAFLRSLHKQYADWSVDFVKHDCAFGDDLD 228
K CA P F + + +ADW VD +K + D L+
Sbjct: 108 ---------NKTCAGFPGSFGYYDID-----------AQTFADWGVDLLKFAGCYCDSLE 147
Query: 229 EGEISVVSEVFK------GEHNRPIIYSLSPGTSAAPDMA---QKINGLANMYRVTGDDW 279
+++ +K R I+YS P +I N +R D
Sbjct: 148 N-----LADGYKHMSLALNRTGRSIVYSCEWPLYMWPFQKPNYTEIRQYCNHWRNFADID 202
Query: 280 DSWPDVAAHFSVARDFAAANMIGSQGLKGRSWPDLDMLPLGWLTDANSTQGPYRACKLTL 339
DSW + + F ++ G G W D DML +G L+
Sbjct: 203 DSWKSIKSILDWT-SFNQERIVDVAGPGG--WNDPDMLVIG-------------NFGLSW 246
Query: 340 DEQKTQMTLWAMAKSPLMFGGDVRKLDDTTYGLITNPTILEIDH 383
++Q TQM LWA+ +PL D+R + L+ + ++ I+
Sbjct: 247 NQQVTQMALWAIMAAPLFMSNDLRHISPQAKALLQDKDVIAINQ 290
>pdb|3A21|A Chain A, Crystal Structure Of Streptomyces Avermitilis Beta-L-
Arabinopyranosidase
pdb|3A21|B Chain B, Crystal Structure Of Streptomyces Avermitilis Beta-L-
Arabinopyranosidase
pdb|3A22|A Chain A, Crystal Structure Of Beta-L-Arabinopyranosidase Complexed
With L- Arabinose
pdb|3A22|B Chain B, Crystal Structure Of Beta-L-Arabinopyranosidase Complexed
With L- Arabinose
pdb|3A23|A Chain A, Crystal Structure Of Beta-l-arabinopyranosidase Complexed
With D- Galactose
pdb|3A23|B Chain B, Crystal Structure Of Beta-l-arabinopyranosidase Complexed
With D- Galactose
Length = 614
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 103/466 (22%), Positives = 168/466 (36%), Gaps = 105/466 (22%)
Query: 30 TEHAILP--PRGWNSYDSFCWIISEQDFLQSAD-IVAKRLLPHGYEYVVVDYLWYRKKVK 86
T +P P GW S++SF I + D VA L GY Y+ +D W++
Sbjct: 4 TRQITVPSAPMGWASWNSFAAKIDYSVIKKQVDAFVAAGLPAAGYTYINIDEGWWQGTR- 62
Query: 87 DAHIDSEGIDLIDEWGRMVPDPDRWPSSKGGKGFTEVAKKVHDMGLKFGIHVMKGISNQA 146
D G + D WP G + + +H GLK GI
Sbjct: 63 ------------DSAGNITVDTAEWPG-----GMSAITAYIHSKGLKAGI---------- 95
Query: 147 VNANTLIYDYDKKGPYTEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGRAFLRSLH 206
YT+AG K+ + P G A G L
Sbjct: 96 ---------------YTDAG----------KDGCGYYYPTGRPAAPGSGSEGHYDQDML- 129
Query: 207 KQYADWSVDFVKHDCAFGD--DLDEG----EISVVSEVFKGEHNRPIIYSL------SPG 254
Q++ W DFVK D GD LD IS RP+ S+ +P
Sbjct: 130 -QFSTWGFDFVKVDWCGGDAEGLDAATTYKSISDAVGRAAATTGRPLTLSICNWGYQNPW 188
Query: 255 TSAAPDMAQKINGLANMYRVTGDDWDSWPDVAAHFSVARDFAAANMIGSQGLKGRSWPDL 314
AA G A ++R T D + + + S+ +F +Q + PD+
Sbjct: 189 NWAA--------GQAPLWR-TSTDIIYYGNQPSMTSLLSNFDQTLHPTAQHTGYYNDPDM 239
Query: 315 DMLPLGWLTDANSTQGPYRACKLTLDEQKTQMTLWAMAKSPLMFGGDVRKLDDTTYGLIT 374
M+ + T A + +T M LWA++ +PL+ G D+ + T G++
Sbjct: 240 LMVGMDGFTAA---------------QNRTHMNLWAISGAPLLAGNDLTTMTSETAGILK 284
Query: 375 NPTILEIDHYSSNNK--DAGANATGVRSW--IATGRQGEIYLAFFNLNNAKTAISAEIAD 430
NP ++ +D S + + TG++++ + +G G + N +A I+ +D
Sbjct: 285 NPEVIAVDQDSRGLQGVKVAEDTTGLQAYGKVLSG-TGNRAVVLLNRTSAAHDITVRWSD 343
Query: 431 LGKALPGWKLNPSCKGTEIWSGKDFGVMQKSVSTEVETHGCALFVL 476
LG N S ++W+ ++ G + V G + +
Sbjct: 344 LGLT------NASATVRDLWARQNVGTSATGYTASVPAGGSVMLTV 383
>pdb|1IAG|A Chain A, First Structure Of A Snake Venom Metalloproteinase: A
Prototype For Matrix
Metalloproteinases(Slash)collagenases
Length = 202
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 416 NLNNAKTAISAEIADLGKALPGWKLNPSCKGTEIWSGKDFGVMQKSVSTEVETHG 470
+LN +T + + + K + S EIWSG+DF +Q S S + + G
Sbjct: 25 DLNIIRTRVHEIVNIINKFYRSLNIRVSLTDLEIWSGQDFITIQSSSSNTLNSFG 79
>pdb|2AIG|P Chain P, Adamalysin Ii With Peptidomimetic Inhibitor Pol647
pdb|3AIG|A Chain A, Adamalysin Ii With Peptidomimetic Inhibitor Pol656
Length = 202
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 416 NLNNAKTAISAEIADLGKALPGWKLNPSCKGTEIWSGKDFGVMQKSVSTEVETHG 470
+LN +T + + + + + S EIWSG+DF +Q S S + + G
Sbjct: 25 DLNIIRTRVHEIVNIINEFYRSLNIRVSLTDLEIWSGQDFITIQSSSSNTLNSFG 79
>pdb|4AIG|A Chain A, Adamalysin Ii With Phosphonate Inhibitor
Length = 201
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 416 NLNNAKTAISAEIADLGKALPGWKLNPSCKGTEIWSGKDFGVMQKSVSTEVETHG 470
+LN +T + + + + + S EIWSG+DF +Q S S + + G
Sbjct: 24 DLNIIRTRVHEIVNIINEFYRSLNIRVSLTDLEIWSGQDFITIQSSSSNTLNSFG 78
>pdb|3IV6|A Chain A, Crystal Structure Of Putative Zn-Dependent Alcohol
Dehydrogenases From Rhodobacter Sphaeroides.
pdb|3IV6|B Chain B, Crystal Structure Of Putative Zn-Dependent Alcohol
Dehydrogenases From Rhodobacter Sphaeroides.
pdb|3IV6|C Chain C, Crystal Structure Of Putative Zn-Dependent Alcohol
Dehydrogenases From Rhodobacter Sphaeroides.
pdb|3IV6|D Chain D, Crystal Structure Of Putative Zn-Dependent Alcohol
Dehydrogenases From Rhodobacter Sphaeroides
Length = 261
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 55 FLQSADIVAKRLLPHGYEYVVVDYLWYRKKVKDAHIDSEGI 95
F ++ D++ + L+PHG WYR++ K+ D E +
Sbjct: 182 FREAGDVLDRALVPHGLIDKPTLLEWYRRRGKETRFDDEDV 222
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,357,260
Number of Sequences: 62578
Number of extensions: 670013
Number of successful extensions: 1307
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1248
Number of HSP's gapped (non-prelim): 37
length of query: 479
length of database: 14,973,337
effective HSP length: 103
effective length of query: 376
effective length of database: 8,527,803
effective search space: 3206453928
effective search space used: 3206453928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)