Query 011701
Match_columns 479
No_of_seqs 146 out of 1438
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 04:17:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011701.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011701hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02899 alpha-galactosidase 100.0 3E-108 7E-113 858.0 41.6 453 26-479 21-633 (633)
2 PLN02229 alpha-galactosidase 100.0 4.6E-99 1E-103 772.7 38.9 357 28-478 55-419 (427)
3 PLN02692 alpha-galactosidase 100.0 6.3E-98 1E-102 761.3 39.2 360 26-478 46-410 (412)
4 PLN02808 alpha-galactosidase 100.0 2.5E-98 5E-103 763.0 35.9 361 26-479 22-386 (386)
5 PLN03231 putative alpha-galact 100.0 1.9E-91 4E-96 705.1 29.9 350 36-391 1-355 (357)
6 KOG2366 Alpha-D-galactosidase 100.0 5.7E-83 1.2E-87 628.1 26.3 366 26-478 23-411 (414)
7 PF02065 Melibiase: Melibiase; 100.0 1.6E-32 3.5E-37 283.2 17.6 212 27-278 32-257 (394)
8 PLN02355 probable galactinol-- 99.9 4.9E-24 1.1E-28 229.0 32.4 399 34-478 196-661 (758)
9 PLN02219 probable galactinol-- 99.9 1.6E-23 3.4E-28 224.6 32.2 399 32-478 190-653 (775)
10 PLN02684 Probable galactinol-- 99.9 9.1E-23 2E-27 218.7 31.1 398 38-478 204-653 (750)
11 PF05691 Raffinose_syn: Raffin 99.9 7E-22 1.5E-26 213.8 30.3 392 38-478 197-667 (747)
12 COG3345 GalA Alpha-galactosida 99.9 4.3E-23 9.4E-28 212.3 12.5 176 26-233 282-463 (687)
13 PLN02711 Probable galactinol-- 99.9 1.2E-20 2.7E-25 202.6 30.4 390 38-478 215-683 (777)
14 PLN02982 galactinol-raffinose 99.8 7.3E-17 1.6E-21 173.4 27.7 257 186-478 457-768 (865)
15 cd06592 GH31_glucosidase_KIAA1 99.8 3.7E-18 8E-23 172.2 16.5 202 34-285 12-227 (303)
16 cd06593 GH31_xylosidase_YicI Y 99.6 9.4E-15 2E-19 147.8 17.8 197 49-291 20-236 (308)
17 PRK10658 putative alpha-glucos 99.4 5.1E-11 1.1E-15 131.5 21.4 212 31-291 258-495 (665)
18 cd06604 GH31_glucosidase_II_Ma 99.3 1.2E-10 2.6E-15 119.4 19.2 197 49-291 20-249 (339)
19 PF01055 Glyco_hydro_31: Glyco 99.2 8.2E-11 1.8E-15 124.8 14.5 217 31-292 20-266 (441)
20 cd06598 GH31_transferase_CtsZ 99.2 3.7E-10 8.1E-15 114.8 15.9 198 50-291 21-243 (317)
21 cd06602 GH31_MGAM_SI_GAA This 99.2 1.1E-09 2.3E-14 112.4 18.8 199 50-291 21-231 (339)
22 cd06600 GH31_MGAM-like This fa 99.2 1.5E-09 3.3E-14 110.3 19.5 196 50-291 21-227 (317)
23 cd06595 GH31_xylosidase_XylS-l 99.2 5E-09 1.1E-13 105.4 22.4 208 31-290 2-223 (292)
24 cd06599 GH31_glycosidase_Aec37 99.1 2.3E-09 5.1E-14 108.9 18.9 199 49-291 25-250 (317)
25 cd06591 GH31_xylosidase_XylS X 99.1 1.4E-09 3E-14 110.7 16.9 198 50-292 21-244 (319)
26 cd06597 GH31_transferase_CtsY 99.1 4.8E-09 1E-13 107.6 20.0 231 32-291 2-263 (340)
27 cd06603 GH31_GANC_GANAB_alpha 99.1 8.5E-09 1.8E-13 105.8 19.0 196 49-291 20-249 (339)
28 COG1501 Alpha-glucosidases, fa 99.0 4.9E-09 1.1E-13 117.2 15.8 211 31-290 256-492 (772)
29 cd06594 GH31_glucosidase_YihQ 99.0 4.5E-09 9.8E-14 106.8 12.3 201 51-290 21-246 (317)
30 cd06589 GH31 The enzymes of gl 98.9 3.4E-08 7.3E-13 98.0 17.4 167 32-291 2-198 (265)
31 PLN02763 hydrolase, hydrolyzin 98.9 9.8E-08 2.1E-12 108.1 22.2 154 31-222 178-335 (978)
32 cd06601 GH31_lyase_GLase GLase 98.9 7.2E-08 1.6E-12 98.5 18.8 111 50-222 21-132 (332)
33 PRK10426 alpha-glucosidase; Pr 98.8 1.8E-07 3.9E-12 103.3 18.0 217 31-290 199-443 (635)
34 PF10566 Glyco_hydro_97: Glyco 98.2 1.2E-05 2.5E-10 79.6 11.7 129 48-252 27-156 (273)
35 KOG1065 Maltase glucoamylase a 97.9 9.8E-05 2.1E-09 81.7 11.8 146 37-222 293-447 (805)
36 PRK09441 cytoplasmic alpha-amy 97.4 0.14 3.1E-06 55.2 27.1 51 188-240 200-251 (479)
37 PF13200 DUF4015: Putative gly 95.3 0.17 3.6E-06 51.5 11.1 84 119-222 62-146 (316)
38 PF02638 DUF187: Glycosyl hydr 95.1 0.22 4.7E-06 50.7 11.4 88 120-221 72-162 (311)
39 KOG1066 Glucosidase II catalyt 94.4 0.16 3.4E-06 55.8 8.5 137 30-207 348-491 (915)
40 PF08533 Glyco_hydro_42C: Beta 93.7 0.075 1.6E-06 40.0 3.4 55 399-475 3-57 (58)
41 KOG2366 Alpha-D-galactosidase 93.6 0.021 4.6E-07 58.3 0.2 151 209-392 37-189 (414)
42 PF02806 Alpha-amylase_C: Alph 93.3 0.85 1.8E-05 37.4 9.4 72 396-477 9-94 (95)
43 TIGR01515 branching_enzym alph 92.7 0.79 1.7E-05 51.0 10.9 141 51-222 154-297 (613)
44 cd06596 GH31_CPE1046 CPE1046 i 92.0 0.99 2.1E-05 44.5 9.2 104 119-292 76-183 (261)
45 PLN00196 alpha-amylase; Provis 91.5 3.2 6.9E-05 44.2 13.3 35 188-222 170-205 (428)
46 PF10438 Cyc-maltodext_C: Cycl 90.1 1.7 3.7E-05 34.9 7.4 71 395-476 8-78 (78)
47 PLN02361 alpha-amylase 89.9 6.3 0.00014 41.6 13.5 36 188-223 146-182 (401)
48 TIGR02104 pulA_typeI pullulana 88.9 3.5 7.7E-05 45.8 11.4 57 190-249 288-345 (605)
49 PF14509 GH97_C: Glycosyl-hydr 88.9 4.7 0.0001 34.1 9.6 76 395-478 13-103 (103)
50 smart00812 Alpha_L_fucos Alpha 88.0 5.6 0.00012 41.7 11.6 21 120-140 130-150 (384)
51 PF14871 GHL6: Hypothetical gl 87.2 6.6 0.00014 34.8 9.9 123 62-220 5-131 (132)
52 PLN02784 alpha-amylase 87.1 8.7 0.00019 44.1 13.0 146 52-222 520-675 (894)
53 PRK14706 glycogen branching en 86.4 4 8.7E-05 45.7 10.0 140 56-222 167-308 (639)
54 TIGR02455 TreS_stutzeri trehal 86.3 3.3 7.1E-05 45.9 8.9 71 398-478 610-683 (688)
55 PRK10933 trehalose-6-phosphate 86.3 6.1 0.00013 43.5 11.2 34 189-222 169-202 (551)
56 PLN02960 alpha-amylase 86.0 10 0.00022 43.8 12.8 133 65-222 425-558 (897)
57 PRK10785 maltodextrin glucosid 85.7 16 0.00034 40.7 14.2 175 51-249 177-369 (598)
58 TIGR02456 treS_nterm trehalose 85.1 3.2 6.9E-05 45.5 8.3 68 398-476 470-538 (539)
59 TIGR02403 trehalose_treC alpha 84.9 8.2 0.00018 42.4 11.4 34 189-222 162-195 (543)
60 PRK12568 glycogen branching en 84.7 7.7 0.00017 44.0 11.2 139 57-222 270-410 (730)
61 PLN02447 1,4-alpha-glucan-bran 84.4 6.8 0.00015 44.6 10.6 133 65-222 259-392 (758)
62 TIGR02402 trehalose_TreZ malto 80.6 27 0.00059 38.4 13.3 100 119-240 161-266 (542)
63 PRK14705 glycogen branching en 80.3 9.3 0.0002 45.8 10.1 123 65-222 774-906 (1224)
64 PRK12313 glycogen branching en 79.9 14 0.00031 41.3 11.1 131 65-222 179-311 (633)
65 PRK05402 glycogen branching en 78.8 15 0.00032 41.9 10.9 34 189-222 372-406 (726)
66 PF01120 Alpha_L_fucos: Alpha- 78.7 18 0.00039 37.3 10.7 22 120-141 140-161 (346)
67 PF11941 DUF3459: Domain of un 78.5 8.1 0.00017 31.0 6.5 53 403-474 37-89 (89)
68 COG1649 Uncharacterized protei 78.1 5.6 0.00012 42.0 6.7 88 119-220 116-206 (418)
69 TIGR02103 pullul_strch alpha-1 78.0 21 0.00046 41.5 11.8 59 191-252 466-525 (898)
70 TIGR02456 treS_nterm trehalose 77.4 21 0.00046 39.1 11.3 34 189-222 166-199 (539)
71 TIGR01370 cysRS possible cyste 76.6 24 0.00053 36.0 10.6 84 121-222 84-169 (315)
72 COG0296 GlgB 1,4-alpha-glucan 75.2 16 0.00035 40.6 9.6 135 55-223 163-306 (628)
73 PF07302 AroM: AroM protein; 73.2 5.7 0.00012 38.3 4.8 142 49-251 66-209 (221)
74 PF09260 DUF1966: Domain of un 72.7 20 0.00043 29.7 7.3 69 400-475 10-80 (91)
75 PRK03705 glycogen debranching 68.5 40 0.00087 38.0 10.9 33 190-222 305-338 (658)
76 PLN02877 alpha-amylase/limit d 63.9 78 0.0017 37.3 12.2 58 192-252 530-596 (970)
77 TIGR02102 pullulan_Gpos pullul 60.7 66 0.0014 38.5 11.1 57 190-249 611-668 (1111)
78 cd06546 GH18_CTS3_chitinase GH 58.8 93 0.002 30.6 10.4 54 198-253 97-150 (256)
79 PF06964 Alpha-L-AF_C: Alpha-L 57.8 43 0.00094 30.7 7.5 27 406-432 102-128 (177)
80 PF00128 Alpha-amylase: Alpha 57.6 23 0.0005 34.6 6.0 51 188-240 136-186 (316)
81 PF13199 Glyco_hydro_66: Glyco 57.0 53 0.0012 36.2 9.0 233 31-295 98-350 (559)
82 COG3469 Chitinase [Carbohydrat 55.9 12 0.00026 36.7 3.4 54 199-253 120-180 (332)
83 smart00632 Aamy_C Aamy_C domai 55.9 78 0.0017 25.1 7.7 56 408-474 16-76 (81)
84 cd00598 GH18_chitinase-like Th 52.3 1.9E+02 0.0042 26.6 11.2 56 198-253 89-148 (210)
85 COG1523 PulA Type II secretory 51.6 1E+02 0.0023 34.9 10.3 33 190-222 328-361 (697)
86 PLN03244 alpha-amylase; Provis 48.6 47 0.001 38.1 6.9 34 189-222 499-533 (872)
87 cd02871 GH18_chitinase_D-like 47.6 57 0.0012 33.0 7.0 57 197-253 94-155 (312)
88 PRK13840 sucrose phosphorylase 47.0 22 0.00047 38.6 4.0 34 189-222 162-195 (495)
89 KOG3111 D-ribulose-5-phosphate 45.6 23 0.00051 33.4 3.4 25 119-143 100-124 (224)
90 cd06542 GH18_EndoS-like Endo-b 45.6 1.9E+02 0.004 28.0 10.2 56 197-252 88-151 (255)
91 COG1306 Uncharacterized conser 44.8 1.2E+02 0.0026 30.7 8.4 92 119-222 125-218 (400)
92 COG3534 AbfA Alpha-L-arabinofu 44.2 72 0.0016 34.1 7.1 67 405-479 413-501 (501)
93 cd02803 OYE_like_FMN_family Ol 43.7 2.6E+02 0.0056 28.1 11.2 32 48-79 129-163 (327)
94 KOG3340 Alpha-L-fucosidase [Ca 43.4 32 0.00069 35.1 4.2 23 120-142 152-174 (454)
95 TIGR02100 glgX_debranch glycog 43.2 1E+02 0.0022 35.0 8.8 34 190-223 310-344 (688)
96 cd06545 GH18_3CO4_chitinase Th 42.8 2.3E+02 0.0049 27.5 10.3 53 196-252 81-138 (253)
97 PF02055 Glyco_hydro_30: O-Gly 41.8 90 0.0019 34.0 7.8 84 368-475 403-494 (496)
98 PF02571 CbiJ: Precorrin-6x re 41.3 63 0.0014 31.8 6.0 62 190-252 70-138 (249)
99 cd02931 ER_like_FMN Enoate red 40.7 1E+02 0.0023 32.2 7.9 80 48-140 138-227 (382)
100 PRK06852 aldolase; Validated 39.9 1.8E+02 0.0039 29.6 9.1 48 200-251 188-237 (304)
101 TIGR03852 sucrose_gtfA sucrose 39.8 33 0.00071 37.0 4.0 34 189-222 158-191 (470)
102 TIGR03326 rubisco_III ribulose 39.3 61 0.0013 34.4 5.8 52 201-252 161-218 (412)
103 COG3669 Alpha-L-fucosidase [Ca 39.0 80 0.0017 33.1 6.4 21 120-140 103-123 (430)
104 cd08209 RLP_DK-MTP-1-P-enolase 38.5 55 0.0012 34.5 5.3 52 201-252 141-198 (391)
105 COG5510 Predicted small secret 38.3 32 0.0007 24.3 2.4 23 1-23 2-24 (44)
106 PF00016 RuBisCO_large: Ribulo 37.6 67 0.0015 32.7 5.6 51 201-251 31-87 (309)
107 PRK14510 putative bifunctional 37.4 1.9E+02 0.0041 35.3 10.2 34 190-223 312-345 (1221)
108 COG3325 ChiA Chitinase [Carboh 37.2 1.2E+02 0.0025 32.3 7.4 66 187-252 141-223 (441)
109 cd08148 RuBisCO_large Ribulose 37.0 60 0.0013 33.8 5.3 52 201-252 144-201 (366)
110 PF03102 NeuB: NeuB family; I 37.0 1E+02 0.0022 30.2 6.6 16 119-134 57-72 (241)
111 PF11714 Inhibitor_I53: Thromb 36.7 28 0.00062 27.0 2.1 20 1-20 1-20 (78)
112 cd02879 GH18_plant_chitinase_c 36.1 68 0.0015 32.3 5.5 54 199-252 94-156 (299)
113 cd08207 RLP_NonPhot Ribulose b 36.1 60 0.0013 34.4 5.2 52 201-252 160-217 (406)
114 PRK12313 glycogen branching en 36.0 1.5E+02 0.0032 33.3 8.6 70 398-479 539-630 (633)
115 PRK06769 hypothetical protein; 35.5 71 0.0015 29.2 5.1 21 119-139 32-52 (173)
116 PRK13523 NADPH dehydrogenase N 35.3 1.4E+02 0.003 30.7 7.6 74 47-138 129-214 (337)
117 TIGR03332 salvage_mtnW 2,3-dik 35.1 70 0.0015 33.9 5.5 52 201-252 156-213 (407)
118 KOG0470 1,4-alpha-glucan branc 34.8 1E+02 0.0022 34.9 6.8 32 191-222 372-404 (757)
119 cd06522 GH25_AtlA-like AtlA is 34.5 52 0.0011 30.8 4.0 22 119-140 110-132 (192)
120 cd06414 GH25_LytC-like The Lyt 33.7 34 0.00073 31.9 2.7 24 119-142 114-137 (191)
121 cd02875 GH18_chitobiase Chitob 33.4 1.1E+02 0.0023 31.8 6.5 57 195-252 93-157 (358)
122 cd08206 RuBisCO_large_I_II_III 33.4 75 0.0016 33.7 5.4 52 202-253 150-207 (414)
123 PRK09549 mtnW 2,3-diketo-5-met 33.3 77 0.0017 33.6 5.4 52 201-252 151-208 (407)
124 cd06416 GH25_Lys1-like Lys-1 i 33.0 31 0.00067 32.3 2.3 23 119-141 111-133 (196)
125 cd08577 PI-PLCc_GDPD_SF_unchar 32.2 94 0.002 30.1 5.5 21 120-140 187-207 (228)
126 PRK05402 glycogen branching en 31.7 1.8E+02 0.0038 33.3 8.4 68 398-477 635-724 (726)
127 cd08213 RuBisCO_large_III Ribu 31.6 85 0.0018 33.3 5.5 52 201-252 148-205 (412)
128 cd02874 GH18_CFLE_spore_hydrol 31.5 1.1E+02 0.0023 30.8 6.1 45 196-240 85-130 (313)
129 PF00704 Glyco_hydro_18: Glyco 31.0 57 0.0012 32.8 4.0 54 198-252 100-164 (343)
130 cd08210 RLP_RrRLP Ribulose bis 30.2 1.2E+02 0.0025 31.7 6.1 52 201-252 142-199 (364)
131 cd06548 GH18_chitinase The GH1 30.0 1.1E+02 0.0023 31.1 5.8 53 199-252 111-181 (322)
132 cd02878 GH18_zymocin_alpha Zym 29.6 1.1E+02 0.0023 31.6 5.7 57 196-252 89-157 (345)
133 cd02930 DCR_FMN 2,4-dienoyl-Co 29.2 6.1E+02 0.013 26.0 11.3 30 48-77 125-157 (353)
134 cd08607 GDPD_GDE5 Glycerophosp 29.0 1.1E+02 0.0024 30.4 5.6 17 206-222 274-290 (290)
135 TIGR00060 L18_bact ribosomal p 28.7 93 0.002 26.9 4.2 51 51-134 64-114 (114)
136 cd06549 GH18_trifunctional GH1 28.6 1.3E+02 0.0028 30.1 6.1 50 195-245 85-139 (298)
137 cd08208 RLP_Photo Ribulose bis 28.5 85 0.0019 33.4 4.8 51 202-252 178-234 (424)
138 cd03465 URO-D_like The URO-D _ 28.2 1.9E+02 0.0041 29.0 7.3 54 65-139 176-229 (330)
139 KOG2806 Chitinase [Carbohydrat 27.7 1.2E+02 0.0026 32.3 5.9 60 190-249 139-208 (432)
140 PF02449 Glyco_hydro_42: Beta- 27.6 91 0.002 32.3 4.9 61 50-139 7-68 (374)
141 cd08212 RuBisCO_large_I Ribulo 27.5 1.2E+02 0.0025 32.7 5.7 52 201-252 162-219 (450)
142 PF01791 DeoC: DeoC/LacD famil 27.4 1.5E+02 0.0032 28.5 6.1 51 200-251 146-200 (236)
143 PF13204 DUF4038: Protein of u 27.1 1.7E+02 0.0038 29.2 6.6 161 37-251 15-184 (289)
144 CHL00040 rbcL ribulose-1,5-bis 26.6 1.2E+02 0.0027 32.7 5.7 52 201-252 184-241 (475)
145 PF14488 DUF4434: Domain of un 26.6 1.4E+02 0.003 27.5 5.3 74 47-140 14-89 (166)
146 COG0407 HemE Uroporphyrinogen- 26.5 1.6E+02 0.0034 30.7 6.2 46 64-132 196-241 (352)
147 PRK04208 rbcL ribulose bisopho 26.5 1.4E+02 0.0029 32.4 6.0 52 201-252 177-234 (468)
148 PRK08227 autoinducer 2 aldolas 26.4 4.1E+02 0.009 26.4 9.0 42 201-252 159-200 (264)
149 cd08575 GDPD_GDE4_like Glycero 25.5 1.4E+02 0.003 29.3 5.6 18 121-138 221-238 (264)
150 cd08205 RuBisCO_IV_RLP Ribulos 25.5 1.4E+02 0.0031 31.1 5.8 50 201-250 147-202 (367)
151 smart00636 Glyco_18 Glycosyl h 25.3 1.5E+02 0.0032 29.9 5.9 55 199-253 93-155 (334)
152 PF00834 Ribul_P_3_epim: Ribul 25.1 96 0.0021 29.4 4.1 27 119-145 93-119 (201)
153 TIGR01668 YqeG_hyp_ppase HAD s 25.0 1.3E+02 0.0027 27.4 4.8 21 119-139 47-67 (170)
154 cd08583 PI-PLCc_GDPD_SF_unchar 24.9 1.8E+02 0.0038 27.9 6.1 18 206-223 219-236 (237)
155 cd02932 OYE_YqiM_FMN Old yello 24.8 2.9E+02 0.0063 28.1 7.9 73 47-137 141-227 (336)
156 PRK09121 5-methyltetrahydropte 23.6 61 0.0013 33.4 2.7 39 42-81 139-180 (339)
157 cd08605 GDPD_GDE5_like_1_plant 23.6 1.4E+02 0.0031 29.5 5.3 16 206-221 266-281 (282)
158 cd02876 GH18_SI-CLP Stabilin-1 23.6 2E+02 0.0043 29.0 6.4 55 196-251 90-154 (318)
159 cd06544 GH18_narbonin Narbonin 23.2 3.1E+02 0.0067 26.9 7.5 44 199-244 99-146 (253)
160 KOG2672 Lipoate synthase [Coen 23.1 1.3E+02 0.0027 30.3 4.5 45 190-240 138-185 (360)
161 PF12690 BsuPI: Intracellular 23.1 3.9E+02 0.0085 21.4 6.8 56 410-477 4-67 (82)
162 KOG0410 Predicted GTP binding 22.6 50 0.0011 33.9 1.7 34 189-222 263-297 (410)
163 CHL00139 rpl18 ribosomal prote 22.5 1.5E+02 0.0032 25.4 4.3 52 50-134 58-109 (109)
164 PRK10785 maltodextrin glucosid 22.5 2.6E+02 0.0056 31.2 7.5 61 396-468 538-598 (598)
165 TIGR01691 enolase-ppase 2,3-di 22.2 89 0.0019 30.0 3.4 26 109-140 95-120 (220)
166 cd04469 S1_Hex1 S1_Hex1: Hex1, 22.0 1.1E+02 0.0025 24.3 3.3 37 71-129 5-42 (75)
167 smart00642 Aamy Alpha-amylase 21.8 1.4E+02 0.0031 27.2 4.4 16 119-134 71-86 (166)
168 PF01183 Glyco_hydro_25: Glyco 21.7 98 0.0021 28.3 3.4 72 44-140 55-129 (181)
169 cd08580 GDPD_Rv2277c_like Glyc 20.7 2.1E+02 0.0046 28.2 5.8 18 121-138 219-237 (263)
No 1
>PLN02899 alpha-galactosidase
Probab=100.00 E-value=3.5e-108 Score=858.02 Aligned_cols=453 Identities=72% Similarity=1.253 Sum_probs=414.9
Q ss_pred CccccCCCCCCceEeccccccCccCCHHHHHHHHHHHHhccccCCceEEEeccccccccccCccCCCCcccccCCCCCce
Q 011701 26 DGRETEHAILPPRGWNSYDSFCWIISEQDFLQSADIVAKRLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMV 105 (479)
Q Consensus 26 ~~~~~~~~~~PpmGWnSW~~~~~~i~e~~i~~~ad~l~~gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~ 105 (479)
...++++++|||||||||+.|+|+|||+.|+++||+|++||+++||+||+|||||+...+.+.|.++.|...+|++|+++
T Consensus 21 ~~~~~glA~TPPMGWNSWn~f~~~I~E~~i~~~Ad~vs~GLk~~GY~YVnIDDcW~~~~~~g~~~~s~g~~~~D~~GrLv 100 (633)
T PLN02899 21 ASSQQQLASFPPRGWNSYDSFSWIVSEEEFLQNAEIVSQRLLPFGYEYVVVDYLWYRKKVEGAYVDSLGFDVIDEWGRPI 100 (633)
T ss_pred ccccCcccCCCCCCCcchhhhccCCCHHHHHHHHHHHHcchHhhCCeEEEEccccccccccccccccccccccCCCCCCc
Confidence 44456999999999999999999999999999999999999999999999999999876667778888888899999999
Q ss_pred eCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhhcccCCCCCCCC
Q 011701 106 PDPDRWPSSKGGKGFTEVAKKVHDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIKEKPCAWMP 185 (479)
Q Consensus 106 ~d~~~FP~~~~~~Gmk~la~~ih~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~ 185 (479)
||++|||++++|+|||+||+|||++|||||||+++|+.+|+++.++||+++.+++.|.+.|++|+++||..+..+|+|++
T Consensus 101 PDp~RFPSs~~g~GmK~LADYVHskGLKFGIY~~~Gi~tcA~~~~~PI~gs~~g~~y~~s~~~~~a~DIa~~~~tC~w~~ 180 (633)
T PLN02899 101 PDPGRWPSSRGGKGFTEVAEKVHAMGLKFGIHVMRGISTQAVNANTPILDAVKGGAYEESGRQWRAKDIALKERACAWMS 180 (633)
T ss_pred cCcccCCCCccCCCcHHHHHHHHhCCcceEEEecCCCcccccccCCccccccccccccccccccchhhccccccccccCC
Confidence 99999999999999999999999999999999999999999999999999988889999899999999999999999999
Q ss_pred CCceeecCCchhHHHHHHHHHHHHhhcCccEEEecCCCCCCCCHHHHHHHHHHHHhhcCCceEEecCCCCCCCcchHHhh
Q 011701 186 HGFMAVNTKLGAGRAFLRSLHKQYADWSVDFVKHDCAFGDDLDEGEISVVSEVFKGEHNRPIIYSLSPGTSAAPDMAQKI 265 (479)
Q Consensus 186 ~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~y~~~~~al~~~~gr~i~l~~~~~~~~~p~~~~~~ 265 (479)
.+++.+|.++|++|+|+++++++||+|||||||+|+|+++.+++++|++|++||+ ++||||+|++|+|...+|.|+..+
T Consensus 181 ~g~~~vDa~~~~g~a~~~Sla~tfAsWGVDyLKyD~c~~~~~~~~ey~~ms~AL~-aTGRPIvySLspG~~~~p~wa~~v 259 (633)
T PLN02899 181 HGFMSVNTKLGAGKAFLRSLYDQYAEWGVDFVKHDCVFGDDFDLEEITYVSEVLK-ELDRPIVYSLSPGTSATPTMAKEV 259 (633)
T ss_pred CCcccccccccchhhhhHHHHHHHHHhCCCEEEEcCCCCCCCChHHHHHHHHHHH-HhCCCeEEEecCCcccchhhhhhh
Confidence 9999999999999999999999999999999999999887777889999999999 999999999999877778888888
Q ss_pred hccccEEEecCCCCCChhhHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 011701 266 NGLANMYRVTGDDWDSWPDVAAHFSVARDFAAANMIGSQGLKGRSWPDLDMLPLGWLTDANSTQGPYRACKLTLDEQKTQ 345 (479)
Q Consensus 266 ~~~a~~~Ris~D~~~~W~~~~~~~~~~~~~~~~~~~~~~g~~~~~wnDpDml~~g~~~~~~~~~~~~~~~~lt~~E~~t~ 345 (479)
.+++|||||++|+++.|.++.++++..+.|..+..+.+.|+++++|||||||+||.+++++.|.|+++.++||.+|+|||
T Consensus 260 ~~~aNmWRitgDI~D~W~sV~~~~d~~~~~~~~~~~g~~G~~gg~WNDpDML~VG~lg~~~~n~G~~r~~~LT~dE~rTh 339 (633)
T PLN02899 260 SGLVNMYRITGDDWDTWGDVAAHFDVSRDFAAAGLIGAKGLRGRSWPDLDMLPLGWLTDPGSNVGPHRACNLTLDEQKTQ 339 (633)
T ss_pred hccCccceecCCcccchHHHHHHHHHHHHHhhccccccCCCCCCCCCCcceecccCCCccccccCccccCCCCHHHHHHH
Confidence 88999999999999999999999998888876555555666678999999999999887776777888899999999999
Q ss_pred HHHHHHhcCCeEeecCCCCCChhhhhcccCcceehcccCCCCCCC-----------------------------------
Q 011701 346 MTLWAMAKSPLMFGGDVRKLDDTTYGLITNPTILEIDHYSSNNKD----------------------------------- 390 (479)
Q Consensus 346 ~tlwa~~~sPL~ig~Dl~~l~~~~~~lL~N~eliainQd~~g~~~----------------------------------- 390 (479)
||||||++||||+|.||++|++++++||+|+||||||||+.+++.
T Consensus 340 fSLWAm~aSPLiiG~DLr~md~~tl~ILTNkeVIAINQds~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~c 419 (633)
T PLN02899 340 MTLWAMAKSPLMYGGDLRKLDQATYSLITNPTLLEINSHSSNNMEFPYVTSTRRNKKKSHSQHSTGVGKSDPSVLGLTSC 419 (633)
T ss_pred HHHHHHHhCchhhcCCcccCCHHHHHHhcCHHHeEEccCccCCeeeeeEeccccccccccccccccCCCCCcceEEEEec
Confidence 999999999999999999999999999999999999999996532
Q ss_pred --------------------------------------------------------------------------------
Q 011701 391 -------------------------------------------------------------------------------- 390 (479)
Q Consensus 391 -------------------------------------------------------------------------------- 390 (479)
T Consensus 420 ~~~~~~~w~~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 499 (633)
T PLN02899 420 KDSKANGWSIRSLDKDLDQICWNEKMGRRGEEPLCLYKTKPLLASDEEIIHNSEYQGKLHLLTSDGGELCLDASPKQKRT 499 (633)
T ss_pred CCCCCCceeEEecCCCcceeeccccccccCCCCeeeecccCCcccchhhhhcccccceEEeeeccccChhhccCCCCCcC
Confidence
Q ss_pred --------------------------cc-----------------ccCCCeEEEEEECCCCCEEEEEEeCCCCCeEEEEE
Q 011701 391 --------------------------AG-----------------ANATGVRSWIATGRQGEIYLAFFNLNNAKTAISAE 427 (479)
Q Consensus 391 --------------------------~~-----------------~~~~~~~vw~~~l~~g~~~valfN~~~~~~~vtv~ 427 (479)
.+ +..++..+|++...+|.+||||||++++.++|++.
T Consensus 500 ~~~~~~~~fs~c~~~~~q~w~l~~~g~l~~~~sglca~v~~~~~~~~~~~~r~w~a~g~~g~~y~~~fnl~~~~~~~~~~ 579 (633)
T PLN02899 500 SKDFRSGSFSPCRWDANQMWELNNNGTLISSYSGLCATVNSVVAEVATGGVRSWIATGRKGEIYVAFFNLNQEKTKISAK 579 (633)
T ss_pred HhHhhccccCCCCCChhhceeeCCCCCEecCccccceEeeccccccccCceeEEEEcCCCccEEEEEEecCccceeEEEE
Confidence 00 01234589999989999999999999999999999
Q ss_pred hhhhcccCCCCC--CCCceEEEEecCCCcceeeccEEEEEEcCCcEEEEEEEcC
Q 011701 428 IADLGKALPGWK--LNPSCKGTEIWSGKDFGVMQKSVSTEVETHGCALFVLNCK 479 (479)
Q Consensus 428 l~~lg~~l~~~~--~~~~~~vrDlW~g~~~g~~~~~~~~~l~~h~~~ll~lt~~ 479 (479)
+++|...|++.+ ...+++.+|||+++++|.++++++..|+.|||+||.|+|+
T Consensus 580 ~~~~~~~~~~~~~~~~~~c~~~e~w~~~~~~~~~~~~~~~v~~hg~~~~~~~c~ 633 (633)
T PLN02899 580 ISDLAKALPGSKNLRTSSCTGHEVWSGKDFGVIKDSISATVEIHGCALFVLHCS 633 (633)
T ss_pred hhHhHhhccccccccccccceEEeccCCCcccccccEEEEeecCceEEEEEeCC
Confidence 999998887633 3558999999999999999999999999999999999985
No 2
>PLN02229 alpha-galactosidase
Probab=100.00 E-value=4.6e-99 Score=772.71 Aligned_cols=357 Identities=26% Similarity=0.464 Sum_probs=317.2
Q ss_pred cccCCCCCCceEeccccccCccCCHHHHHHHHHHH-HhccccCCceEEEeccccccccccCccCCCCcccccCCCCCcee
Q 011701 28 RETEHAILPPRGWNSYDSFCWIISEQDFLQSADIV-AKRLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMVP 106 (479)
Q Consensus 28 ~~~~~~~~PpmGWnSW~~~~~~i~e~~i~~~ad~l-~~gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~ 106 (479)
.++++++|||||||||+.|+|+|||+.|+++||.| ++||+++||+||+|||||+... ||++|+++|
T Consensus 55 ~~ngla~tPpmGWnSWn~~~~~i~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~-------------rd~~G~l~~ 121 (427)
T PLN02229 55 LNNGLARTPQMGWNSWNFFACNINETVIKETADALVSTGLADLGYIHVNIDDCWSNLK-------------RDSKGQLVP 121 (427)
T ss_pred ccCCccCCCCceEEchhhhCcccCHHHHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCC-------------cCCCCCEEE
Confidence 35899999999999999999999999999999975 8899999999999999999753 578899999
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhhcccCCCCCCCCC
Q 011701 107 DPDRWPSSKGGKGFTEVAKKVHDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIKEKPCAWMPH 186 (479)
Q Consensus 107 d~~~FP~~~~~~Gmk~la~~ih~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~ 186 (479)
|++|||+ |||+|++|||++|||||||+++|+.+|+.+| |
T Consensus 122 d~~rFP~-----G~k~ladyiH~~GlKfGIy~d~G~~TC~~~p------------------------------------G 160 (427)
T PLN02229 122 DPKTFPS-----GIKLLADYVHSKGLKLGIYSDAGVFTCQVRP------------------------------------G 160 (427)
T ss_pred ChhhcCC-----cHHHHHHHHHHCCCceEEeccCCCcccCCCC------------------------------------C
Confidence 9999999 9999999999999999999999988775443 2
Q ss_pred CceeecCCchhHHHHHHHHHHHHhhcCccEEEecCCCCCCCCH-HHHHHHHHHHHhhcCCceEEecCC-CCCCCcchHHh
Q 011701 187 GFMAVNTKLGAGRAFLRSLHKQYADWSVDFVKHDCAFGDDLDE-GEISVVSEVFKGEHNRPIIYSLSP-GTSAAPDMAQK 264 (479)
Q Consensus 187 ~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~~-~~y~~~~~al~~~~gr~i~l~~~~-~~~~~p~~~~~ 264 (479)
+ ..|++.++++||+|||||||+|+|+....++ ++|.+|++||+ ++||||+||+|+ |...+..|+.
T Consensus 161 S-----------~g~e~~DA~~fA~WGVDylK~D~C~~~~~~~~~~y~~m~~AL~-~tGRpI~~SlC~WG~~~p~~w~~- 227 (427)
T PLN02229 161 S-----------LFHEVDDADIFASWGVDYLKYDNCYNLGIKPIERYPPMRDALN-ATGRSIFYSLCEWGVDDPALWAG- 227 (427)
T ss_pred C-----------ccHHHHHHHHHHHcCCCEEEecCCCCCCcchhHHHHHHHHHHH-hhCCCcEEEecCCCCCCHHHHHH-
Confidence 2 2467788999999999999999998765544 57999999999 999999999996 5443334654
Q ss_pred hhccccEEEecCCCCCChhhHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcccccCCCCCCCCCCCCCCCHHHHHH
Q 011701 265 INGLANMYRVTGDDWDSWPDVAAHFSVARDFAAANMIGSQGLKGRSWPDLDMLPLGWLTDANSTQGPYRACKLTLDEQKT 344 (479)
Q Consensus 265 ~~~~a~~~Ris~D~~~~W~~~~~~~~~~~~~~~~~~~~~~g~~~~~wnDpDml~~g~~~~~~~~~~~~~~~~lt~~E~~t 344 (479)
+++|+||+++||++.|.++.++++....|+. +++ ||+|||||||+||. .+||.+|+||
T Consensus 228 --~~~n~WR~s~DI~d~W~sv~~i~~~~~~~~~-----~ag--PG~wnDpDML~vGn-------------~glT~~E~rt 285 (427)
T PLN02229 228 --KVGNSWRTTDDINDTWASMTTIADLNNKWAA-----YAG--PGGWNDPDMLEVGN-------------GGMTYEEYRG 285 (427)
T ss_pred --hhcCeeeccCCcccccccHHHHHHHHHHHHh-----hcC--CCCCCCCCeeeeCC-------------CCCCHHHHHH
Confidence 5799999999999999999999987777653 344 68999999999994 4799999999
Q ss_pred HHHHHHHhcCCeEeecCCCCCChhhhhcccCcceehcccCCCCCCCccccC----CCeEEEEEECCCCCEEEEEEeCCCC
Q 011701 345 QMTLWAMAKSPLMFGGDVRKLDDTTYGLITNPTILEIDHYSSNNKDAGANA----TGVRSWIATGRQGEIYLAFFNLNNA 420 (479)
Q Consensus 345 ~~tlwa~~~sPL~ig~Dl~~l~~~~~~lL~N~eliainQd~~g~~~~~~~~----~~~~vw~~~l~~g~~~valfN~~~~ 420 (479)
|||||||++||||+|+||++|++++++||+|+||||||||++|.+++.+.. +..+||++++++|+.+|+|||++++
T Consensus 286 hfsLWai~~SPLiiG~DL~~m~~~tl~ILtNkEVIAINQD~lG~qg~~v~~~~~~~~~~vW~~~L~~g~~aValfN~~~~ 365 (427)
T PLN02229 286 HFSIWALMKAPLLIGCDVRNMTAETMEILSNKEVIAVNQDPLGVQGRKIQANGKNGCQQVWAGPLSGDRLVVALWNRCSE 365 (427)
T ss_pred HHHHHHHHhCceeecCCcccCCHHHHHHhcCHHHHhhcccccccCcEEEEecCCCCceEEEEEECCCCCEEEEEEeCCCC
Confidence 999999999999999999999999999999999999999999999887632 3479999999999999999999999
Q ss_pred CeEEEEEhhhhcccCCCCCCCCceEEEEecCCCccee-eccEEEEEEcCCcEEEEEEEc
Q 011701 421 KTAISAEIADLGKALPGWKLNPSCKGTEIWSGKDFGV-MQKSVSTEVETHGCALFVLNC 478 (479)
Q Consensus 421 ~~~vtv~l~~lg~~l~~~~~~~~~~vrDlW~g~~~g~-~~~~~~~~l~~h~~~ll~lt~ 478 (479)
+++++++|++||+ ++ ...++|||||+|+++|. ++++|+++|+||+|+||||++
T Consensus 366 ~~~v~v~~~~lGl--~~---~~~~~VrDLW~~~dlg~~~~~~~~~~v~~Hg~~l~rl~~ 419 (427)
T PLN02229 366 PATITASWDVIGL--ES---SISVSVRDLWKHKDLSENVVGSFGAQVDAHDCHMYIFTP 419 (427)
T ss_pred CEEEEEEHHHcCC--CC---CCceEEEECCCCCccCccccceEEEEECCCeEEEEEEec
Confidence 9999999999996 32 34699999999999974 678999999999999999987
No 3
>PLN02692 alpha-galactosidase
Probab=100.00 E-value=6.3e-98 Score=761.29 Aligned_cols=360 Identities=25% Similarity=0.469 Sum_probs=321.2
Q ss_pred CccccCCCCCCceEeccccccCccCCHHHHHHHHHHH-HhccccCCceEEEeccccccccccCccCCCCcccccCCCCCc
Q 011701 26 DGRETEHAILPPRGWNSYDSFCWIISEQDFLQSADIV-AKRLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRM 104 (479)
Q Consensus 26 ~~~~~~~~~~PpmGWnSW~~~~~~i~e~~i~~~ad~l-~~gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~ 104 (479)
.+.++++|+|||||||||++|+|+|||+.|+++||.| +.||+++||+||+|||||+... +|+.|++
T Consensus 46 ~~~~ngla~tPpmGWnSW~~~~~~i~E~~i~~~ad~~~~~gl~~~Gy~yv~iDDgW~~~~-------------rd~~G~~ 112 (412)
T PLN02692 46 NLLANGLGITPPMGWNSWNHFSCKIDEKMIKETADALVSTGLSKLGYTYVNIDDCWAEIA-------------RDEKGNL 112 (412)
T ss_pred hcccCcCcCCCcceEEchhhhCcccCHHHHHHHHHHHHhccchhcCcEEEEEcCCcCCCC-------------CCCCCCe
Confidence 3446999999999999999999999999999999975 7899999999999999999753 5788999
Q ss_pred eeCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhhcccCCCCCCC
Q 011701 105 VPDPDRWPSSKGGKGFTEVAKKVHDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIKEKPCAWM 184 (479)
Q Consensus 105 ~~d~~~FP~~~~~~Gmk~la~~ih~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~ 184 (479)
+||++|||+ |||+|++|||++|||||||+++|..+|+.
T Consensus 113 ~~d~~kFP~-----G~k~ladyiH~~GLKfGIy~d~G~~tC~~------------------------------------- 150 (412)
T PLN02692 113 VPKKSTFPS-----GIKALADYVHSKGLKLGIYSDAGYFTCSK------------------------------------- 150 (412)
T ss_pred eeChhhcCC-----cHHHHHHHHHHCCCceEEEecCCccccCC-------------------------------------
Confidence 999999999 99999999999999999999999776631
Q ss_pred CCCceeecCCchhHHHHHHHHHHHHhhcCccEEEecCCCCCCCCH-HHHHHHHHHHHhhcCCceEEecCCCCC-CCcchH
Q 011701 185 PHGFMAVNTKLGAGRAFLRSLHKQYADWSVDFVKHDCAFGDDLDE-GEISVVSEVFKGEHNRPIIYSLSPGTS-AAPDMA 262 (479)
Q Consensus 185 ~~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~~-~~y~~~~~al~~~~gr~i~l~~~~~~~-~~p~~~ 262 (479)
.+|+++.|+++++++||+|||||||+|+|+....++ ++|++|++||+ ++||||+||+|++.. .+..|+
T Consensus 151 ---------~~pGS~g~e~~DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~-~tGRpI~~SlC~wg~~~p~~w~ 220 (412)
T PLN02692 151 ---------TMPGSLGHEEQDAKTFASWGIDYLKYDNCNNDGSKPTVRYPVMTRALM-KAGRPIFFSLCEWGDMHPALWG 220 (412)
T ss_pred ---------CCCCchHHHHHHHHHHHhcCCCEEeccccCCCCcchhHHHHHHHHHHH-HhCCCeEEEecCCCcCChhhhh
Confidence 124568999999999999999999999998755544 68999999999 999999999996433 333465
Q ss_pred HhhhccccEEEecCCCCCChhhHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcccccCCCCCCCCCCCCCCCHHHH
Q 011701 263 QKINGLANMYRVTGDDWDSWPDVAAHFSVARDFAAANMIGSQGLKGRSWPDLDMLPLGWLTDANSTQGPYRACKLTLDEQ 342 (479)
Q Consensus 263 ~~~~~~a~~~Ris~D~~~~W~~~~~~~~~~~~~~~~~~~~~~g~~~~~wnDpDml~~g~~~~~~~~~~~~~~~~lt~~E~ 342 (479)
+ +++|+||++.||++.|.++.++++....|+ .++ +||+|||||||+||. .+||.+|+
T Consensus 221 ~---~~~n~WR~s~DI~d~W~sv~~~~~~~~~~~-----~~a--gPG~wnDpDML~VGn-------------~glT~~E~ 277 (412)
T PLN02692 221 S---KVGNSWRTTNDISDTWDSMISRADMNEVYA-----ELA--RPGGWNDPDMLEVGN-------------GGMTKDEY 277 (412)
T ss_pred h---hcCCccccccccccchHhHHHHHHHHHHHh-----hcc--CCCCCCCCCeEeECC-------------CCCCHHHH
Confidence 4 579999999999999999999988766654 233 368999999999994 47999999
Q ss_pred HHHHHHHHHhcCCeEeecCCCCCChhhhhcccCcceehcccCCCCCCCccc-cCCCeEEEEEECCCCCEEEEEEeCCCCC
Q 011701 343 KTQMTLWAMAKSPLMFGGDVRKLDDTTYGLITNPTILEIDHYSSNNKDAGA-NATGVRSWIATGRQGEIYLAFFNLNNAK 421 (479)
Q Consensus 343 ~t~~tlwa~~~sPL~ig~Dl~~l~~~~~~lL~N~eliainQd~~g~~~~~~-~~~~~~vw~~~l~~g~~~valfN~~~~~ 421 (479)
|||||||||++||||||+||+++++++++||+|+||||||||++|.+++.+ ..++.+||++++++|+.+|+|||+++.+
T Consensus 278 rThfsLWai~~SPLiiG~DL~~~~~~~l~iLtN~evIAiNQD~lG~q~~~v~~~~~~~vW~k~l~~g~~aVal~N~~~~~ 357 (412)
T PLN02692 278 IVHFSIWAISKAPLLLGCDVRNMTKETMDIVANKEVIAVNQDPLGVQAKKVRMEGDLEIWAGPLSGYRVALLLLNRGPWR 357 (412)
T ss_pred HHHHHHHHHHhCcceecCCcccCCHHHHHHhcCHHHhhhccCccccCcEEEEecCCeEEEEEECCCCCEEEEEEECCCCC
Confidence 999999999999999999999999999999999999999999999999876 5678899999999999999999999999
Q ss_pred eEEEEEhhhhcccCCCCCCCCceEEEEecCCCccee-eccEEEEEEcCCcEEEEEEEc
Q 011701 422 TAISAEIADLGKALPGWKLNPSCKGTEIWSGKDFGV-MQKSVSTEVETHGCALFVLNC 478 (479)
Q Consensus 422 ~~vtv~l~~lg~~l~~~~~~~~~~vrDlW~g~~~g~-~~~~~~~~l~~h~~~ll~lt~ 478 (479)
++++++|++||+ ++ ...++|||||+|+++|. ++++++++|+||+|+||||++
T Consensus 358 ~~i~~~~~~lgl--~~---~~~~~vrDLW~~~~~g~~~~~~~~~~v~~Hg~~l~rl~~ 410 (412)
T PLN02692 358 NSITANWDDIGI--PA---NSIVEARDLWEHKTLKQHFVGNLTATVDSHACKMYILKP 410 (412)
T ss_pred EEEEEeHHHhCC--CC---CCceEEEECCCCCccCccccceEEEEECCceEEEEEEec
Confidence 999999999996 32 34689999999999984 678999999999999999987
No 4
>PLN02808 alpha-galactosidase
Probab=100.00 E-value=2.5e-98 Score=763.00 Aligned_cols=361 Identities=25% Similarity=0.497 Sum_probs=324.1
Q ss_pred CccccCCCCCCceEeccccccCccCCHHHHHHHHHHH-HhccccCCceEEEeccccccccccCccCCCCcccccCCCCCc
Q 011701 26 DGRETEHAILPPRGWNSYDSFCWIISEQDFLQSADIV-AKRLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRM 104 (479)
Q Consensus 26 ~~~~~~~~~~PpmGWnSW~~~~~~i~e~~i~~~ad~l-~~gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~ 104 (479)
.+.++++++|||||||||++|+|+|||+.|+++||+| ++||+++||+||+|||||+... ||++|++
T Consensus 22 ~~~~ngla~tPpmGWnsW~~~~~~i~e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~-------------rd~~G~~ 88 (386)
T PLN02808 22 NLLDNGLGLTPQMGWNSWNHFQCNINETLIKQTADAMVSSGLAALGYKYINLDDCWAELK-------------RDSQGNL 88 (386)
T ss_pred hcccCcccCCCcceEEchHHHCCCCCHHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCC-------------cCCCCCE
Confidence 4456899999999999999999999999999999987 7899999999999999999753 5788999
Q ss_pred eeCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhhcccCCCCCCC
Q 011701 105 VPDPDRWPSSKGGKGFTEVAKKVHDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIKEKPCAWM 184 (479)
Q Consensus 105 ~~d~~~FP~~~~~~Gmk~la~~ih~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~ 184 (479)
+||++|||+ |||+|++|||++|||||||+++|..+|+.
T Consensus 89 ~~d~~rFP~-----G~~~lad~iH~~GlkfGiy~~~G~~tC~~------------------------------------- 126 (386)
T PLN02808 89 VPKASTFPS-----GIKALADYVHSKGLKLGIYSDAGTLTCSK------------------------------------- 126 (386)
T ss_pred eeChhhcCc-----cHHHHHHHHHHCCCceEEEecCCccccCC-------------------------------------
Confidence 999999999 99999999999999999999998776631
Q ss_pred CCCceeecCCchhHHHHHHHHHHHHhhcCccEEEecCCCCCCCCH-HHHHHHHHHHHhhcCCceEEecCC-CCCCCcchH
Q 011701 185 PHGFMAVNTKLGAGRAFLRSLHKQYADWSVDFVKHDCAFGDDLDE-GEISVVSEVFKGEHNRPIIYSLSP-GTSAAPDMA 262 (479)
Q Consensus 185 ~~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~~-~~y~~~~~al~~~~gr~i~l~~~~-~~~~~p~~~ 262 (479)
.+|+++.|+++++++||+|||||||+|+|+.+..++ ++|.+|++||+ ++||||+||+|+ +...+..|+
T Consensus 127 ---------~~pGs~~~e~~DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~-~tGRpi~~slc~wg~~~p~~w~ 196 (386)
T PLN02808 127 ---------TMPGSLGHEEQDAKTFASWGIDYLKYDNCENTGTSPQERYPKMSKALL-NSGRPIFFSLCEWGQEDPATWA 196 (386)
T ss_pred ---------CCCcchHHHHHHHHHHHHhCCCEEeecCcCCCCccHHHHHHHHHHHHH-HhCCCeEEEecCCCCCCHHHHH
Confidence 125568899999999999999999999998755444 57999999999 999999999985 444444676
Q ss_pred HhhhccccEEEecCCCCCChhhHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcccccCCCCCCCCCCCCCCCHHHH
Q 011701 263 QKINGLANMYRVTGDDWDSWPDVAAHFSVARDFAAANMIGSQGLKGRSWPDLDMLPLGWLTDANSTQGPYRACKLTLDEQ 342 (479)
Q Consensus 263 ~~~~~~a~~~Ris~D~~~~W~~~~~~~~~~~~~~~~~~~~~~g~~~~~wnDpDml~~g~~~~~~~~~~~~~~~~lt~~E~ 342 (479)
. .++|+||++.||.+.|.++.++++....|.. +++ |++|||||||+||. .+||.+|+
T Consensus 197 ~---~~~n~WR~s~Di~d~W~~v~~~~~~~~~~~~-----~ag--PG~wnDpDML~vGn-------------~glt~~E~ 253 (386)
T PLN02808 197 G---DIGNSWRTTGDIQDNWDSMTSRADQNDRWAS-----YAR--PGGWNDPDMLEVGN-------------GGMTTEEY 253 (386)
T ss_pred H---hhcCcccccCCcccchhhHHHHHHhhhhhHh-----hcC--CCCCCCCCeeeECC-------------CCCCHHHH
Confidence 4 5799999999999999999999987766642 344 68999999999994 47999999
Q ss_pred HHHHHHHHHhcCCeEeecCCCCCChhhhhcccCcceehcccCCCCCCCccc-cCCCeEEEEEECCCCCEEEEEEeCCCCC
Q 011701 343 KTQMTLWAMAKSPLMFGGDVRKLDDTTYGLITNPTILEIDHYSSNNKDAGA-NATGVRSWIATGRQGEIYLAFFNLNNAK 421 (479)
Q Consensus 343 ~t~~tlwa~~~sPL~ig~Dl~~l~~~~~~lL~N~eliainQd~~g~~~~~~-~~~~~~vw~~~l~~g~~~valfN~~~~~ 421 (479)
|||||||||++||||||+||++|+++.++||+|+||||||||++|.+++.+ ..++.+||+++|++|+.+|+|||+++.+
T Consensus 254 rthfsLWam~~SPLiiG~DL~~~~~~~l~iLtNkevIAINQD~lG~~~~~v~~~~~~~vW~k~L~~g~~aVal~N~~~~~ 333 (386)
T PLN02808 254 RSHFSIWALAKAPLLIGCDIRSMDNETFELLSNKEVIAVNQDKLGVQGKKVKKDGDLEVWAGPLSKKRVAVVLWNRGSSR 333 (386)
T ss_pred HHHHHHHHHHhCcceecCCcCcCCHHHHHHhcCHHHHhhcCCccccCcEEEEecCCeEEEEEECCCCCEEEEEEECCCCC
Confidence 999999999999999999999999999999999999999999999999877 4677899999999999999999999999
Q ss_pred eEEEEEhhhhcccCCCCCCCCceEEEEecCCCcceeeccEEEEEEcCCcEEEEEEEcC
Q 011701 422 TAISAEIADLGKALPGWKLNPSCKGTEIWSGKDFGVMQKSVSTEVETHGCALFVLNCK 479 (479)
Q Consensus 422 ~~vtv~l~~lg~~l~~~~~~~~~~vrDlW~g~~~g~~~~~~~~~l~~h~~~ll~lt~~ 479 (479)
++++++|++||+ ++ ...++|||||+|+++|.++++++++|+||+|+||||+++
T Consensus 334 ~~~~~~~~~lgl--~~---~~~~~vrDlWs~~~~g~~~~~~~~~v~pHg~~~~rlt~~ 386 (386)
T PLN02808 334 ATITARWSDIGL--NS---SAVVNARDLWAHSTQSSVKGQLSALVESHACKMYVLTPR 386 (386)
T ss_pred EEEEEEHHHhCC--CC---CCceEEEECCCCCccCcccceEEEEECCceEEEEEEeCC
Confidence 999999999996 32 347999999999999999999999999999999999985
No 5
>PLN03231 putative alpha-galactosidase; Provisional
Probab=100.00 E-value=1.9e-91 Score=705.08 Aligned_cols=350 Identities=56% Similarity=1.050 Sum_probs=302.4
Q ss_pred CceEeccccccCccCCHHHHHHHHHHHHhccccCCceEEEeccccccccccCccC---CCCcccccCCCCCceeCCCCCC
Q 011701 36 PPRGWNSYDSFCWIISEQDFLQSADIVAKRLLPHGYEYVVVDYLWYRKKVKDAHI---DSEGIDLIDEWGRMVPDPDRWP 112 (479)
Q Consensus 36 PpmGWnSW~~~~~~i~e~~i~~~ad~l~~gl~~~Gy~yi~iDdgW~~~~~~g~~~---~~~~~~~~d~~G~~~~d~~~FP 112 (479)
||||||||+.|+|+|||+.|+++||+|++||+++||+||+|||||+...+.|.+. .+.+...||++|+++||++|||
T Consensus 1 PpMGWNSWn~f~~~i~E~~i~~~Ad~v~~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rFP 80 (357)
T PLN03231 1 PPRGWNSYDSFSFTISEEQFLENAKIVSETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRWP 80 (357)
T ss_pred CCCCccchhccCcCcCHHHHHHHHHHHHcchHHhCCEEEEECCcccccccccccccccccccccccCCCCCcccCcccCC
Confidence 8999999999999999999999999889999999999999999999753222110 1122335899999999999999
Q ss_pred CCCCCCChHHHHHHHHHcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhhcccCCCCCCCCCCceeec
Q 011701 113 SSKGGKGFTEVAKKVHDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIKEKPCAWMPHGFMAVN 192 (479)
Q Consensus 113 ~~~~~~Gmk~la~~ih~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~~~~lD 192 (479)
++.+++|||+||+|||+||||||||+++|+.+|++..++||.+.... .|.+++++||..+...|+|+++.|..||
T Consensus 81 s~~~~~G~k~lADyvHs~GLKfGIY~~~G~~tca~~~~~pi~G~~Gs-----~g~~~~a~Dia~~~~~c~~~~~~~~~v~ 155 (357)
T PLN03231 81 STTGGKGFAPIAAKVHALGLKLGIHVMRGISTTAVKKKTPILGAFKS-----NGHAWNAKDIALMDQACPWMQQCFVGVN 155 (357)
T ss_pred CCccccCcHHHHHHHHhCCcceEEEecCCccchhcccCCccCCCCcc-----cccccchhhhcccccccccccccccccc
Confidence 99999999999999999999999999999999999988998865221 1345778999988889999999989999
Q ss_pred CCchhHHHHHHHHHHHHhhcCccEEEecCCCCCC-CCHHHHHHHHHHHHhhcCCceEEecCCCCCCCcchHHhhhccccE
Q 011701 193 TKLGAGRAFLRSLHKQYADWSVDFVKHDCAFGDD-LDEGEISVVSEVFKGEHNRPIIYSLSPGTSAAPDMAQKINGLANM 271 (479)
Q Consensus 193 ~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~-~~~~~y~~~~~al~~~~gr~i~l~~~~~~~~~p~~~~~~~~~a~~ 271 (479)
.+||++|+|+++++++||+|||||||+|+|++.. ...++|.+|++||+ ++||||+||||++...++.|+..+.++||+
T Consensus 156 ~~~~gaq~y~~~~a~~fA~WGVDylK~D~c~~~~~~~~~~y~~m~~AL~-~tGRpIv~Slc~g~~~~~~~~~~i~~~an~ 234 (357)
T PLN03231 156 TSSEGGKLFIQSLYDQYASWGIDFIKHDCVFGAENPQLDEILTVSKAIR-NSGRPMIYSLSPGDGATPGLAARVAQLVNM 234 (357)
T ss_pred ccchhHHHHHHHHHHHHHHhCCCEEeecccCCCCcccHHHHHHHHHHHH-HhCCCeEEEecCCCCCCchhhhhhhhhcCc
Confidence 9999999999999999999999999999998643 45679999999999 999999999998766667788777788999
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHHHhhhhcccC-CCCCCCCCCCCcCcccccCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 011701 272 YRVTGDDWDSWPDVAAHFSVARDFAAANMIGSQG-LKGRSWPDLDMLPLGWLTDANSTQGPYRACKLTLDEQKTQMTLWA 350 (479)
Q Consensus 272 ~Ris~D~~~~W~~~~~~~~~~~~~~~~~~~~~~g-~~~~~wnDpDml~~g~~~~~~~~~~~~~~~~lt~~E~~t~~tlwa 350 (479)
|||++||+++|.++.++++..+.|..+......+ .+|++|||||||+||.++.++...|..++++||.+|+||||||||
T Consensus 235 WR~s~DI~d~W~~v~~~~~~~~~~~~~~~~~~~~~agpG~WnD~DML~vG~~g~~~~~~g~~~~~glT~~E~rthfslWa 314 (357)
T PLN03231 235 YRVTGDDWDDWKYLVKHFDVARDFAAAGLIAIPSVVGGKSWVDLDMLPFGRLTDPAAAYGPYRNSRLSLEEKKTQMTLWA 314 (357)
T ss_pred ccccCCcccchhhHHHHHHHHHHHhhhcccccccCCCCCCCCCccchhcCCCCCCcccccccccCCCCHHHHHHHHHHHH
Confidence 9999999999999999998877776433332222 146899999999999876443233455678999999999999999
Q ss_pred HhcCCeEeecCCCCCChhhhhcccCcceehcccCCCCCCCc
Q 011701 351 MAKSPLMFGGDVRKLDDTTYGLITNPTILEIDHYSSNNKDA 391 (479)
Q Consensus 351 ~~~sPL~ig~Dl~~l~~~~~~lL~N~eliainQd~~g~~~~ 391 (479)
|++||||+|+||++|++++++||+|+||||||||++|.+.+
T Consensus 315 m~~SPLiiG~DL~~~~~~tl~iLtN~evIAINQD~lG~~~~ 355 (357)
T PLN03231 315 VAKSPLMFGGDLRRLDNETLSLLTNPTVLEVNSHSTGNRNA 355 (357)
T ss_pred HHhCchhhcCCcccCCHHHHHHhcChHHheecCCccccccC
Confidence 99999999999999999999999999999999999998653
No 6
>KOG2366 consensus Alpha-D-galactosidase (melibiase) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.7e-83 Score=628.11 Aligned_cols=366 Identities=29% Similarity=0.464 Sum_probs=313.4
Q ss_pred CccccCCCCCCceEeccccccCccCC----------HHHHHHHHHHH-HhccccCCceEEEeccccccccccCccCCCCc
Q 011701 26 DGRETEHAILPPRGWNSYDSFCWIIS----------EQDFLQSADIV-AKRLLPHGYEYVVVDYLWYRKKVKDAHIDSEG 94 (479)
Q Consensus 26 ~~~~~~~~~~PpmGWnSW~~~~~~i~----------e~~i~~~ad~l-~~gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~ 94 (479)
-.-+|||++||||||+||+.|.|+++ |+.++++||.| ++|+++.||+||+|||||....
T Consensus 23 ~~l~NGLg~tP~MGw~sW~~f~cniDCv~~pd~cIsE~l~~~~ad~mvseG~~~vGY~yi~iDDCW~e~~---------- 92 (414)
T KOG2366|consen 23 MSLNNGLGRTPQMGWNSWERFRCNIDCVFGPDFCISEQLFKEMADAMVSEGLADVGYEYINIDDCWSEVT---------- 92 (414)
T ss_pred eeeccccccCCCcccccccceeeecccccCCccchhHHHHHHHHHHHHHhHHHhcCcEEEechhhhhhhc----------
Confidence 34467999999999999999999877 99999999987 6799999999999999999864
Q ss_pred ccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhh
Q 011701 95 IDLIDEWGRMVPDPDRWPSSKGGKGFTEVAKKVHDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDI 174 (479)
Q Consensus 95 ~~~~d~~G~~~~d~~~FP~~~~~~Gmk~la~~ih~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di 174 (479)
||..|++++|++|||+ |+++|++|+|++|||||||.+.|..||+..|
T Consensus 93 ---Rd~~grLva~~~rFP~-----Gi~~ladyvHs~GLKlGiYsD~G~~TC~g~P------------------------- 139 (414)
T KOG2366|consen 93 ---RDSDGRLVADPSRFPS-----GIKALADYVHSKGLKLGIYSDAGNFTCAGYP------------------------- 139 (414)
T ss_pred ---cCCccccccChhhccc-----chhhhhhchhhcCCceeeeeccCchhhccCC-------------------------
Confidence 5788999999999999 9999999999999999999999877765433
Q ss_pred cccCCCCCCCCCCceeecCCchhHHHHHHHHHHHHhhcCccEEEecCCCCCCCC-HHHHHHHHHHHHhhcCCceEEecC-
Q 011701 175 AIKEKPCAWMPHGFMAVNTKLGAGRAFLRSLHKQYADWSVDFVKHDCAFGDDLD-EGEISVVSEVFKGEHNRPIIYSLS- 252 (479)
Q Consensus 175 ~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~-~~~y~~~~~al~~~~gr~i~l~~~- 252 (479)
+.+.|++.++++||+|||||+|+|.|+...++ +++|..|++||+ ++||||++++|
T Consensus 140 ----------------------GS~~~e~~DA~tFA~WgvDylKlD~C~~~~~~~~~~Yp~ms~aLN-~tGrpi~ySlC~ 196 (414)
T KOG2366|consen 140 ----------------------GSLGHEESDAKTFADWGVDYLKLDGCFNNLITMPEGYPIMSRALN-NTGRPIFYSLCS 196 (414)
T ss_pred ----------------------cccchhhhhhhhhHhhCCcEEeccccccccccccccchhHHHHHh-ccCCceEEEecc
Confidence 23567788899999999999999999875544 578999999999 99999999977
Q ss_pred CCCCCCcch----HHhhhccccEEEecCCCCCChhhHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcccccCCCCC
Q 011701 253 PGTSAAPDM----AQKINGLANMYRVTGDDWDSWPDVAAHFSVARDFAAANMIGSQGLKGRSWPDLDMLPLGWLTDANST 328 (479)
Q Consensus 253 ~~~~~~p~~----~~~~~~~a~~~Ris~D~~~~W~~~~~~~~~~~~~~~~~~~~~~g~~~~~wnDpDml~~g~~~~~~~~ 328 (479)
|+...+..| ...++.++|+||+.+||.++|.++..+++.+...++ .+.... +|++|||||||++|.
T Consensus 197 W~~~~~~~~~~pny~~i~~~~N~WR~~dDI~dtW~Sv~~I~d~~~~nqd-~~~~~a--gPg~WNDpDmL~iGN------- 266 (414)
T KOG2366|consen 197 WPAYHPGLPHHPNYKNISTICNSWRTTDDIQDTWKSVDSIIDYICWNQD-RIAPLA--GPGGWNDPDMLEIGN------- 266 (414)
T ss_pred CcccccCccCCCcchhhhhhhccccchhhhhhHHHHHHHHHHHHhhhhh-hhcccc--CCCCCCChhHhhcCC-------
Confidence 543332222 134567899999999999999999998885432222 223334 468999999999993
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCeEeecCCCCCChhhhhcccCcceehcccCCCCCCCcccc--CCCeEEEEEECC
Q 011701 329 QGPYRACKLTLDEQKTQMTLWAMAKSPLMFGGDVRKLDDTTYGLITNPTILEIDHYSSNNKDAGAN--ATGVRSWIATGR 406 (479)
Q Consensus 329 ~~~~~~~~lt~~E~~t~~tlwa~~~sPL~ig~Dl~~l~~~~~~lL~N~eliainQd~~g~~~~~~~--~~~~~vw~~~l~ 406 (479)
.+||.+|+++||++||++++||++|+|++.++++.+++|+|||+|+||||++|.|++.+. .+..+||+++++
T Consensus 267 ------~G~s~e~y~~qf~lWai~kAPLlms~Dlr~is~~~~~il~nk~~IaiNQDplgiqGr~i~~e~~~ievw~~pls 340 (414)
T KOG2366|consen 267 ------GGMSYEEYKGQFALWAILKAPLLMSNDLRLISKQTKEILQNKEVIAINQDPLGIQGRKIVLEGDSIEVWSGPLS 340 (414)
T ss_pred ------CCccHHHHHHHHHHHHHhhchhhhccchhhcCHHHHHHhcChhheeccCCccchhheeeeecCCceEEEeeccC
Confidence 589999999999999999999999999999999999999999999999999999987653 555999999999
Q ss_pred CCCEEEEEEeCCC--CCeEEE-EEhhhhcccCCCCCCCCceEEEEecCC-CcceeeccEEEEEEcCCcEEEEEEEc
Q 011701 407 QGEIYLAFFNLNN--AKTAIS-AEIADLGKALPGWKLNPSCKGTEIWSG-KDFGVMQKSVSTEVETHGCALFVLNC 478 (479)
Q Consensus 407 ~g~~~valfN~~~--~~~~vt-v~l~~lg~~l~~~~~~~~~~vrDlW~g-~~~g~~~~~~~~~l~~h~~~ll~lt~ 478 (479)
.-+++|+++|+.+ .+++|+ +.|.++|+. ....|.++|||++ .+.+..+++++++|+|||++||+|.|
T Consensus 341 ~~~~Ava~lNr~~~~~~~~It~~~l~~~g~~-----~~~~~~~~dLw~~~~~~~~~~~~i~~~V~phG~~l~~l~~ 411 (414)
T KOG2366|consen 341 GKSVAVAFLNRRKTGIPARITAASLRELGLT-----NPASYTAHDLWSGVLGFLPTKDSISAQVNPHGVVLFVLHP 411 (414)
T ss_pred CceEEEEEecccCCCCCccccHHHHhhcCCC-----CCceeEeeehhhccccccccCCeEEEEECCCCcEEEEEEe
Confidence 8889999999984 466787 789999863 2468999999999 45556678999999999999999987
No 7
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=100.00 E-value=1.6e-32 Score=283.20 Aligned_cols=212 Identities=21% Similarity=0.400 Sum_probs=143.9
Q ss_pred ccccCCCCCCceEeccccccCccCCHHHHHHHHHHHHhccccCCceEEEeccccccccccCccCCCCcccccCCCCCcee
Q 011701 27 GRETEHAILPPRGWNSYDSFCWIISEQDFLQSADIVAKRLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMVP 106 (479)
Q Consensus 27 ~~~~~~~~~PpmGWnSW~~~~~~i~e~~i~~~ad~l~~gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~ 106 (479)
.+.+...++||||||||+++++++||+.+++.|+.+ +++||++|+|||||+.... + ..+..|+|++
T Consensus 32 ~~~~~~~~~~pv~~nsW~~~~~d~~e~~i~~~a~~~----~~~G~e~fviDDGW~~~r~-~---------d~~~~GdW~~ 97 (394)
T PF02065_consen 32 LRPPWRDKPPPVGWNSWEAYYFDITEEKILELADAA----AELGYEYFVIDDGWFGGRD-D---------DNAGLGDWEP 97 (394)
T ss_dssp STTTTTTSS--EEEESHHHHTTG--HHHHHHHHHHH----HHHT-SEEEE-SSSBCTES-T---------TTSTTSBECB
T ss_pred CCCccCCCCCceEEEcccccCcCCCHHHHHHHHHHH----HHhCCEEEEEcCccccccC-C---------CcccCCceeE
Confidence 334456789999999999999999999999999987 5689999999999998632 1 1235799999
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhhcccCCCCCCCCC
Q 011701 107 DPDRWPSSKGGKGFTEVAKKVHDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIKEKPCAWMPH 186 (479)
Q Consensus 107 d~~~FP~~~~~~Gmk~la~~ih~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~ 186 (479)
|++|||+ ||++|+++||++|||||||+.|.. +.++|.++.+ +++|..+.-.... .. ..
T Consensus 98 ~~~kFP~-----Gl~~l~~~i~~~Gmk~GlW~ePe~----v~~~S~l~~~---------hPdw~l~~~~~~~-~~---~r 155 (394)
T PF02065_consen 98 DPKKFPN-----GLKPLADYIHSLGMKFGLWFEPEM----VSPDSDLYRE---------HPDWVLRDPGRPP-TL---GR 155 (394)
T ss_dssp BTTTSTT-----HHHHHHHHHHHTT-EEEEEEETTE----EESSSCHCCS---------SBGGBTCCTTSE--EC---BT
T ss_pred ChhhhCC-----cHHHHHHHHHHCCCeEEEEecccc----ccchhHHHHh---------CccceeecCCCCC-cC---cc
Confidence 9999999 999999999999999999999975 4678887754 3456544211111 11 12
Q ss_pred CceeecCCchhHHHHHHHHH-HHHhhcCccEEEecCCCC------CCCC--HHHHH----HHHHHHHhhcCCceEEecCC
Q 011701 187 GFMAVNTKLGAGRAFLRSLH-KQYADWSVDFVKHDCAFG------DDLD--EGEIS----VVSEVFKGEHNRPIIYSLSP 253 (479)
Q Consensus 187 ~~~~lD~t~p~~~~~~~~~~-~~~a~wGvdylK~D~~~~------~~~~--~~~y~----~~~~al~~~~gr~i~l~~~~ 253 (479)
..++||+++|+|++|+.+.+ +.+++|||||||+|++.. ...+ ..+|. .+.++|+ +...++++..|.
T Consensus 156 ~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~-~~~P~v~iE~Cs 234 (394)
T PF02065_consen 156 NQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLR-ARFPDVLIENCS 234 (394)
T ss_dssp TBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHH-HHTTTSEEEE-B
T ss_pred cceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCCCCCCCCCchHHHHHHHHHHHHHHHHHH-HhCCCcEEEecc
Confidence 45899999999999997655 567999999999999853 1121 12333 4777787 777788888775
Q ss_pred -CCCCCcchHHhhhccccEEEecCCC
Q 011701 254 -GTSAAPDMAQKINGLANMYRVTGDD 278 (479)
Q Consensus 254 -~~~~~p~~~~~~~~~a~~~Ris~D~ 278 (479)
|.... .++ +-.+++..-+|+++
T Consensus 235 sGG~R~-D~g--~l~~~~~~w~SD~t 257 (394)
T PF02065_consen 235 SGGGRF-DPG--MLYYTPQSWTSDNT 257 (394)
T ss_dssp TTBTTT-SHH--HHCCSSEEESBST-
T ss_pred CCCCcc-ccc--hheeccccccCCcc
Confidence 32221 121 11356666677665
No 8
>PLN02355 probable galactinol--sucrose galactosyltransferase 1
Probab=99.94 E-value=4.9e-24 Score=228.99 Aligned_cols=399 Identities=15% Similarity=0.163 Sum_probs=229.5
Q ss_pred CCCc-----eEeccccccCccCCHHHHHHHHHHHHhccccCCceEEEeccccccccc--cCccCCC-CcccccCCCCCce
Q 011701 34 ILPP-----RGWNSYDSFCWIISEQDFLQSADIVAKRLLPHGYEYVVVDYLWYRKKV--KDAHIDS-EGIDLIDEWGRMV 105 (479)
Q Consensus 34 ~~Pp-----mGWnSW~~~~~~i~e~~i~~~ad~l~~gl~~~Gy~yi~iDdgW~~~~~--~g~~~~~-~~~~~~d~~G~~~ 105 (479)
++.| +|||||++|+.+|||+.|++.++.|+++-.+. ++|+||||||.... .+..+.. .+.......-++.
T Consensus 196 K~~P~~ld~~GWCTW~afy~~Vt~~~I~~~l~~l~~~g~p~--~~viIDDGwQs~~~d~~~~~~~~~~~~q~~~rL~~f~ 273 (758)
T PLN02355 196 KKMPDMLNWFGWCTWDAFYTNVTAEGVKQGLESLEKGGVTP--KFVIIDDGWQSVGMDPTGIECLADNSANFANRLTHIK 273 (758)
T ss_pred ccCCcccceeeEEehhHhhccCCHHHHHHHHHHHHhCCCCc--cEEEEeccccccccccccccccccccchhhhhhcccc
Confidence 3677 99999999999999999999999997654444 79999999998632 1100000 0000001123456
Q ss_pred eCCCCCCCC--------CCCCChHHHHHHHHH-cCCe-EEEEeecCcccccccCCccccccCC-CCCCcccCccchhhhh
Q 011701 106 PDPDRWPSS--------KGGKGFTEVAKKVHD-MGLK-FGIHVMKGISNQAVNANTLIYDYDK-KGPYTEAGRQWRAQDI 174 (479)
Q Consensus 106 ~d~~~FP~~--------~~~~Gmk~la~~ih~-~Glk-~Giy~~pg~~~~~~~~~s~i~~~~~-~~~~~~~g~~~~~~di 174 (479)
+|+ |||.- ..+.||+.+++.||+ .|+| .|+|.+-.-.+-.+.|+.+....+. ...|...-++....
T Consensus 274 ~n~-KF~~~~~~~~~~~~~~~Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~~~~~~p~~spGv~~~-- 350 (758)
T PLN02355 274 ENH-KFQKNGKEGHRVDDPALGLGHIVTEIKEKHSLKYVYVWHAITGYWGGVKPGVAGMEHYESKMSYPVSSPGVQSN-- 350 (758)
T ss_pred ccc-cccccccccccccCCCCcHHHHHHHHHhhcCCcEEEEeeeecceecCcCCCCcccccccccccccccCCccccc--
Confidence 674 88831 012499999999986 6776 4888664322223344444332111 11111111111100
Q ss_pred cccCCCCC-C---CCCCceeecCCchhHHHHHHHHHHHHhhcCccEEEecCCCC-----CCC-CH-HHHHHHHHHHH---
Q 011701 175 AIKEKPCA-W---MPHGFMAVNTKLGAGRAFLRSLHKQYADWSVDFVKHDCAFG-----DDL-DE-GEISVVSEVFK--- 240 (479)
Q Consensus 175 ~~~~~~c~-~---~~~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~-----~~~-~~-~~y~~~~~al~--- 240 (479)
.+|. . .+++...+|+. .+..||+.+.+.+++-|||+||+|...- ... .. +-.++..+||.
T Consensus 351 ----~~~~a~d~i~~~G~glv~Pe--~~~~FY~~~hsyL~s~GVDgVKVD~Q~~le~l~~g~ggrv~la~~y~~ALe~S~ 424 (758)
T PLN02355 351 ----EPCDALESITTNGLGLVNPE--KVFSFYNELHSYLASAGIDGVKVDVQNILETLGAGHGGRVKLARKYHQALEASI 424 (758)
T ss_pred ----CcchhhhhcccCceeccCHH--HHHHHHHHHHHHHHHcCCCeEEEchhhhHHHhhcCCCcHHHHHHHHHHHHHHHH
Confidence 0110 0 12334444432 4688999999999999999999997531 111 11 11233444443
Q ss_pred -hhc-CCceEEecCCCCCCCcchHHhhhccccEEEecCCCCCChhhH--HHHHHHHHHHHHhhhhcccCCCCCCCCCCCC
Q 011701 241 -GEH-NRPIIYSLSPGTSAAPDMAQKINGLANMYRVTGDDWDSWPDV--AAHFSVARDFAAANMIGSQGLKGRSWPDLDM 316 (479)
Q Consensus 241 -~~~-gr~i~l~~~~~~~~~p~~~~~~~~~a~~~Ris~D~~~~W~~~--~~~~~~~~~~~~~~~~~~~g~~~~~wnDpDm 316 (479)
+.. ++-++-|+|..++. ... .......|+|+|.++.+... .+++..+.+ .++. +...|||.||
T Consensus 425 ~r~F~~ngvI~CMs~~~d~---i~~--~k~sav~R~SDDF~P~dP~sh~~Hi~~~AyN----SLll----g~~v~PDWDM 491 (758)
T PLN02355 425 ARNFPDNGIISCMSHNTDG---LYS--AKRTAVIRASDDFWPRDPASHTIHIASVAYN----TIFL----GEFMQPDWDM 491 (758)
T ss_pred HHhCCCCceEEecccCchh---hcc--cccceeeeeccccccCCCccCchhhhhhhhh----hhhh----ccccccCccc
Confidence 233 56677777753221 111 24578999999999888643 333333221 1332 2357999999
Q ss_pred cCcccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCeEeecCCCCCChhhhh--cccCcceehcccCCCCCCCccc-
Q 011701 317 LPLGWLTDANSTQGPYRACKLTLDEQKTQMTLWAMAKSPLMFGGDVRKLDDTTYG--LITNPTILEIDHYSSNNKDAGA- 393 (479)
Q Consensus 317 l~~g~~~~~~~~~~~~~~~~lt~~E~~t~~tlwa~~~sPL~ig~Dl~~l~~~~~~--lL~N~eliainQd~~g~~~~~~- 393 (479)
+..-+ .-.+.|.+..|++|+|++|+|-+-+-+-+.++ ++.+-.|++....++..+..+.
T Consensus 492 F~S~h------------------p~A~~HAaaRAisGGPIYvSD~PG~hdf~LLk~LvlpdGsIlR~~~pg~PtrDclF~ 553 (758)
T PLN02355 492 FHSLH------------------PMAEYHAAARAVGGCAIYVSDKPGQHDFNLLKKLVLPDGSILRAKLPGRPTRDCLFS 553 (758)
T ss_pred ceecC------------------ccHHHHHHHHhccCCcEEEecCCCCccHHHHHhhhCCCCceeccccCCCcchhhhcc
Confidence 98653 23567999999999999999998877655544 3445556665543332221111
Q ss_pred ---cCC--CeEEEEEECCCCCEEEEEEeCCCCC-----e----------E--EEEEhhhhccc--C--CCCCCCCceEEE
Q 011701 394 ---NAT--GVRSWIATGRQGEIYLAFFNLNNAK-----T----------A--ISAEIADLGKA--L--PGWKLNPSCKGT 447 (479)
Q Consensus 394 ---~~~--~~~vw~~~l~~g~~~valfN~~~~~-----~----------~--vtv~l~~lg~~--l--~~~~~~~~~~vr 447 (479)
.++ -+.||- +..+..+|++||-.... + + -.++.+++... . +.+ ...+.|+
T Consensus 554 Dp~~dg~slLKIwn--~nk~sGviG~FNcqGagw~~~~~~~~~~~~~~~~l~~~v~~~Dv~~~~~~a~~~w--~~~~~vy 629 (758)
T PLN02355 554 DPARDGKSLLKIWN--LNEFTGVIGVFNCQGAGWCRVGKKNLIHDEQPGTITGVIRAKDVDYLPKVADDEW--TGDSIVY 629 (758)
T ss_pred ccccCCceEEEEEE--cCCcccEEEEEeccCCcccchhccccccCCCCceeEEEEccccccchhhccccCC--CCCeEEE
Confidence 112 235665 45667799999975433 1 2 33556665210 0 111 2344555
Q ss_pred EecCCCcce-eeccEEEEEEcCCcEEEEEEEc
Q 011701 448 EIWSGKDFG-VMQKSVSTEVETHGCALFVLNC 478 (479)
Q Consensus 448 DlW~g~~~g-~~~~~~~~~l~~h~~~ll~lt~ 478 (479)
.-=+++-+- ..+..++++|++-+..||.+.|
T Consensus 630 ~~~sg~l~~~~~~~~~~vtL~~~~~eiftv~P 661 (758)
T PLN02355 630 SHLGGEVVYLPKDASLPVTLKSREYEVFTVVP 661 (758)
T ss_pred EecCceEEecCCCCceEEEecCCceEEEEEee
Confidence 433333110 0145788999999999999876
No 9
>PLN02219 probable galactinol--sucrose galactosyltransferase 2
Probab=99.93 E-value=1.6e-23 Score=224.63 Aligned_cols=399 Identities=15% Similarity=0.134 Sum_probs=232.0
Q ss_pred CCCCCc-----eEeccccccCccCCHHHHHHHHHHHHhccccCCceEEEeccccccccccCcc--C-CCCcccccCCCCC
Q 011701 32 HAILPP-----RGWNSYDSFCWIISEQDFLQSADIVAKRLLPHGYEYVVVDYLWYRKKVKDAH--I-DSEGIDLIDEWGR 103 (479)
Q Consensus 32 ~~~~Pp-----mGWnSW~~~~~~i~e~~i~~~ad~l~~gl~~~Gy~yi~iDdgW~~~~~~g~~--~-~~~~~~~~d~~G~ 103 (479)
..++.| +|||||++|+.+|||+.|++.++.|+++-.+. ++++||||||.-...+.. + -..|.......-+
T Consensus 190 e~K~~p~~~D~~GWCTWdafy~dVt~~~I~~~l~~l~e~gip~--~~viIDDGwQsi~~~~~~~~~~~~~g~qf~~rL~~ 267 (775)
T PLN02219 190 EKKKLPSFLDWFGWCTWDAFYTDVTAEGVDEGLKSLSEGGTPP--KFLIIDDGWQQIENKEKDENCVVQEGAQFATRLTG 267 (775)
T ss_pred ccccCccccceeeEEEhhHhhccCCHHHHHHHHHHHHhCCCCc--eEEEEccCccccccccccccccccccchhhhhhcc
Confidence 466778 99999999999999999999999997654433 799999999986432110 0 0000000001233
Q ss_pred ceeCCC--------CCCCCCCCCChHHHHHHHHH-cCCe-EEEEeecCcccccccCCccccccCC-CCCCcccCccch--
Q 011701 104 MVPDPD--------RWPSSKGGKGFTEVAKKVHD-MGLK-FGIHVMKGISNQAVNANTLIYDYDK-KGPYTEAGRQWR-- 170 (479)
Q Consensus 104 ~~~d~~--------~FP~~~~~~Gmk~la~~ih~-~Glk-~Giy~~pg~~~~~~~~~s~i~~~~~-~~~~~~~g~~~~-- 170 (479)
+.+|+. .||. |||.+++.||+ .|+| .|+|.+-.-.+-.+.|+.+....+. ...|...-++..
T Consensus 268 f~en~KF~~~~~~~~fp~-----Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~~~~~~p~~spg~~~~ 342 (775)
T PLN02219 268 IKENAKFQKNDQKNEQVS-----GLKHVVDDAKQRHNVKQVYVWHALAGYWGGVKPAAAGMEHYDSALAYPVQSPGVLGN 342 (775)
T ss_pred ccccccccccccccCCCC-----cHHHHHHHHHhccCCcEEEEeeeccceecCcCCCCcccccccccccccccCCCcccc
Confidence 445532 4787 99999999986 6776 4888654322223344443332111 011110000000
Q ss_pred hhhhcccCCCCCCCCCCceeecCCchhHHHHHHHHHHHHhhcCccEEEecCCCC-----CCC-C-HHHHHHHHHHHH---
Q 011701 171 AQDIAIKEKPCAWMPHGFMAVNTKLGAGRAFLRSLHKQYADWSVDFVKHDCAFG-----DDL-D-EGEISVVSEVFK--- 240 (479)
Q Consensus 171 ~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~-----~~~-~-~~~y~~~~~al~--- 240 (479)
..|+... .-..++...|+| ..+..||+.+.+.+++-|||+||+|...- ... . .+-.++..+||.
T Consensus 343 ~pd~a~d----~l~~~G~glV~P--~~~~~FYd~~hsyLas~GVDgVKVDvQ~~Le~L~~~~ggrv~la~~y~~ALe~S~ 416 (775)
T PLN02219 343 QPDIVMD----SLSVHGLGLVNP--KKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGAGHGGRVSLTRSYQQALEASI 416 (775)
T ss_pred Ccchhhh----hhhhCCccccCH--HHHHHHHHHHHHHHHHcCCCEEEEchhhhHHHhhccCCcHHHHHHHHHHHHHHHH
Confidence 0000000 001123455654 36789999999999999999999997541 111 1 111233444444
Q ss_pred -hhc-CCceEEecCCCCCCCcchHHhhhccccEEEecCCCCCChhhH--HHHHHHHHHHHHhhhhcccCCCCCCCCCCCC
Q 011701 241 -GEH-NRPIIYSLSPGTSAAPDMAQKINGLANMYRVTGDDWDSWPDV--AAHFSVARDFAAANMIGSQGLKGRSWPDLDM 316 (479)
Q Consensus 241 -~~~-gr~i~l~~~~~~~~~p~~~~~~~~~a~~~Ris~D~~~~W~~~--~~~~~~~~~~~~~~~~~~~g~~~~~wnDpDm 316 (479)
+.. ++-++-|+|..+. .... .......|+|+|.++.+..- .+++..+.+ .++. +...|||.||
T Consensus 417 ~r~F~~ng~I~CMsh~~d---~i~~--~k~sav~R~SDDF~P~dP~sh~~Hi~~nAyN----SLll----g~~v~PDWDM 483 (775)
T PLN02219 417 ARNFTDNGCISCMCHNTD---GLYS--AKQTAVVRASDDFYPRDPASHTIHISSVAYN----TLFL----GEFMQPDWDM 483 (775)
T ss_pred HHhCCCCCeEEecccCch---hhhc--ccccceeecccccccCCCccCcchhhhhhhh----hHHh----ccccccCchh
Confidence 233 5567777775322 1111 24578999999999887642 333332221 1332 2357899999
Q ss_pred cCcccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCeEeecCCCCCChhhhh--cccCcceehcccCCCCCCCccc-
Q 011701 317 LPLGWLTDANSTQGPYRACKLTLDEQKTQMTLWAMAKSPLMFGGDVRKLDDTTYG--LITNPTILEIDHYSSNNKDAGA- 393 (479)
Q Consensus 317 l~~g~~~~~~~~~~~~~~~~lt~~E~~t~~tlwa~~~sPL~ig~Dl~~l~~~~~~--lL~N~eliainQd~~g~~~~~~- 393 (479)
+..-+ .-.+.|.+..|++|+|++|+|-+-+-+-+.++ ++.+-.|++....++..+..+.
T Consensus 484 FqS~H------------------p~A~~HAaaRAiSGGPIYvSD~PG~Hdf~LLk~LvlpDGsIlR~~~pg~PTrDclF~ 545 (775)
T PLN02219 484 FHSLH------------------PAAEYHGAARAVGGCAIYVSDKPGNHNFDLLRKLVLPDGSVLRAQLPGRPTRDCLFA 545 (775)
T ss_pred ceecC------------------ccHHHHHHHHhhcCCcEEEecCCCCccHHHHHHhhCCCCceeccccCCCcchhhhcc
Confidence 98653 23477999999999999999998877755544 3455556665443322121111
Q ss_pred ---c--CCCeEEEEEECCCCCEEEEEEeCCCCC-----------------eEEEEEhhhhccc----CCCCCCCCceEEE
Q 011701 394 ---N--ATGVRSWIATGRQGEIYLAFFNLNNAK-----------------TAISAEIADLGKA----LPGWKLNPSCKGT 447 (479)
Q Consensus 394 ---~--~~~~~vw~~~l~~g~~~valfN~~~~~-----------------~~vtv~l~~lg~~----l~~~~~~~~~~vr 447 (479)
. ..-+.||.. ..+.-+|++||-.... .+-.|...|+... -+.+ ...+.|+
T Consensus 546 Dp~~dg~slLKIwn~--n~~~gviG~FNcqGagW~~~~~~~~~~~~~~~~~s~~v~~~Dv~~i~~~a~~~w--~~~~~vy 621 (775)
T PLN02219 546 DPARDGTSLLKIWNV--NKCTGVVGVFNCQGAGWCKIEKKTRIHDTSPGTLTGSVCADDVDQIAQVAGEDW--SGDSVVY 621 (775)
T ss_pred ccCCCCceEEEEEEc--ccccceEEEEeccCCCCCchhhccccccCCCcceEEEEcchhccchhhccccCc--CCCEEEE
Confidence 1 123578875 4456699999986543 3444666666210 0111 2344455
Q ss_pred EecCCCcce-eeccEEEEEEcCCcEEEEEEEc
Q 011701 448 EIWSGKDFG-VMQKSVSTEVETHGCALFVLNC 478 (479)
Q Consensus 448 DlW~g~~~g-~~~~~~~~~l~~h~~~ll~lt~ 478 (479)
--=+++-.- .-...++++|++.+.-||.+.|
T Consensus 622 ~~~sg~l~~l~~~~~~~vtL~~~~~Ei~tv~P 653 (775)
T PLN02219 622 AYKSGEVVRLPKGASIPVTLKVLEYELFHFCP 653 (775)
T ss_pred EeccCeEEEcCCCCceEEEecCCcEEEEEEee
Confidence 444444211 1135688999999999998876
No 10
>PLN02684 Probable galactinol--sucrose galactosyltransferase
Probab=99.92 E-value=9.1e-23 Score=218.65 Aligned_cols=398 Identities=15% Similarity=0.153 Sum_probs=222.7
Q ss_pred eEeccccccCccCCHHHHHHHHHHHHhccccCCceEEEeccccccccccCcc--CCCCcccccCCCCCceeCCCCCCCCC
Q 011701 38 RGWNSYDSFCWIISEQDFLQSADIVAKRLLPHGYEYVVVDYLWYRKKVKDAH--IDSEGIDLIDEWGRMVPDPDRWPSSK 115 (479)
Q Consensus 38 mGWnSW~~~~~~i~e~~i~~~ad~l~~gl~~~Gy~yi~iDdgW~~~~~~g~~--~~~~~~~~~d~~G~~~~d~~~FP~~~ 115 (479)
+|||||++|+.+|||+.|++.++.|+++-.+. ++++||||||.....+.. +...+.......-++.+| .|||...
T Consensus 204 fGWCTWdafy~dVt~~~I~~~l~~l~~~g~p~--~~vIIDDGwQs~~~d~~~~~~~~~~~q~~~rL~~f~en-~KF~~~~ 280 (750)
T PLN02684 204 FGWCTWDAFYQEVTQEGVEAGLKSLAAGGTPP--KFVIIDDGWQSVGGDPTVEAGDEKKEQPLLRLTGIKEN-EKFKKKD 280 (750)
T ss_pred eeEEEhhHhhccCCHHHHHHHHHHHHhCCCCc--eEEEEecccccccccccccccccccchhhhhhccCccc-ccccccc
Confidence 89999999999999999999999997654443 799999999986532110 000000000012234565 6887422
Q ss_pred C-CCChHHHHHHHH-HcCCe-EEEEeecCcccccccCCccccccCC-CCCCcccCccc--hhhhhcccCCCCCCCCCCce
Q 011701 116 G-GKGFTEVAKKVH-DMGLK-FGIHVMKGISNQAVNANTLIYDYDK-KGPYTEAGRQW--RAQDIAIKEKPCAWMPHGFM 189 (479)
Q Consensus 116 ~-~~Gmk~la~~ih-~~Glk-~Giy~~pg~~~~~~~~~s~i~~~~~-~~~~~~~g~~~--~~~di~~~~~~c~~~~~~~~ 189 (479)
. ..|||.+++.|+ +.|+| .|+|.+-.-.+-.+.|+.+...++. ...|...-++. ...|+.... -..++..
T Consensus 281 ~p~~Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~s~~~~p~~s~gv~~~~p~~~~d~----l~~~g~g 356 (750)
T PLN02684 281 DPNVGIKNIVNIAKEKHGLKYVYVWHAITGYWGGVRPGVKEMEEYGSVMKYPNVSKGVVENDPTWKTDV----MTLQGLG 356 (750)
T ss_pred CCCccHHHHHHHHHhhcCCcEEEEEeeecccccccCCCCcchhhccccccccccCccccccCccccccc----cccCccc
Confidence 1 149999999997 56887 4888764333333445555442211 01111100000 011110000 0012334
Q ss_pred eecCCchhHHHHHHHHHHHHhhcCccEEEecCCCC-C----CC-C-HHHHHHHHHHHH----hhc-CCceEEecCCCCCC
Q 011701 190 AVNTKLGAGRAFLRSLHKQYADWSVDFVKHDCAFG-D----DL-D-EGEISVVSEVFK----GEH-NRPIIYSLSPGTSA 257 (479)
Q Consensus 190 ~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~-~----~~-~-~~~y~~~~~al~----~~~-gr~i~l~~~~~~~~ 257 (479)
.++|. .+..||+.+...+++-|||+||+|...- + .. . .+-.++..+||. +.. ++-++-|+|..+..
T Consensus 357 lv~P~--~~~~FYd~~hsyL~s~GVDgVKVD~Q~~le~l~~~~ggrv~l~~ay~~ALe~S~~r~F~~ngvI~CMs~~~d~ 434 (750)
T PLN02684 357 LVNPK--KVYKFYNELHSYLADAGIDGVKVDVQCILETLGAGLGGRVELTRQYHQALDASVARNFPDNGCIACMSHNTDA 434 (750)
T ss_pred ccCHH--HHHHHHHHHHHHHHHcCCCeEEEChhhhHHHhhcccCcHHHHHHHHHHHHHHHHHHhCCCCCeEEecccCchh
Confidence 45542 5788999999999999999999997541 1 11 1 111223344443 233 34467677753221
Q ss_pred CcchHHhhhccccEEEecCCCCCChhh--HHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcccccCCCCCCCCCCCC
Q 011701 258 APDMAQKINGLANMYRVTGDDWDSWPD--VAAHFSVARDFAAANMIGSQGLKGRSWPDLDMLPLGWLTDANSTQGPYRAC 335 (479)
Q Consensus 258 ~p~~~~~~~~~a~~~Ris~D~~~~W~~--~~~~~~~~~~~~~~~~~~~~g~~~~~wnDpDml~~g~~~~~~~~~~~~~~~ 335 (479)
.+. .+.....|+|+|.++.+.. ..+++..+.+ .++. +...|||.||+...+
T Consensus 435 --i~~---sk~sav~R~SDDF~p~dP~sh~~Hi~~~AyN----SLll----g~~v~PDWDMFqS~h-------------- 487 (750)
T PLN02684 435 --LYC---SKQTAVVRASDDFYPRDPVSHTIHIAAVAYN----SVFL----GEFMQPDWDMFHSLH-------------- 487 (750)
T ss_pred --hhc---ccccceeeeccccccCCCccchhhhhhhhhh----hhhh----ccccccCcccceecC--------------
Confidence 121 1457899999999987764 3344433221 1332 235789999997653
Q ss_pred CCCHHHHHHHHHHHHHhcCCeEeecCCCCCChhhhh--cccCcceehcccCCCCCCCccc----c--CCCeEEEEEECCC
Q 011701 336 KLTLDEQKTQMTLWAMAKSPLMFGGDVRKLDDTTYG--LITNPTILEIDHYSSNNKDAGA----N--ATGVRSWIATGRQ 407 (479)
Q Consensus 336 ~lt~~E~~t~~tlwa~~~sPL~ig~Dl~~l~~~~~~--lL~N~eliainQd~~g~~~~~~----~--~~~~~vw~~~l~~ 407 (479)
.-.+.|.+..|++|+|++|||.+-+-+-+.++ ++.+-.|++....++..+..+. . ..-+.||-.. .
T Consensus 488 ----p~A~~HAaaRAisGGPIYvSD~PG~Hdf~LLk~LvlpDGsIlR~~~pg~PTrDcLF~DP~~dg~slLKIwn~n--~ 561 (750)
T PLN02684 488 ----PAAEYHASARAISGGPLYVSDAPGKHNFELLKKLVLPDGSILRARLPGRPTRDCLFSDPARDGVSLLKIWNMN--K 561 (750)
T ss_pred ----ccHHHHHHHHhhcCCceEEecCCCCccHHHHHhhhCCCCcccccccCCccchhhhccCcccCCccEEEEEEec--C
Confidence 23477999999999999999988877655544 3444445554443322211111 1 1235677665 4
Q ss_pred CCEEEEEEeCCCCCeEEEEEhhhhcccCCCCCCCCceEEEEe-----------cCCCcc---------ee--eccEEEEE
Q 011701 408 GEIYLAFFNLNNAKTAISAEIADLGKALPGWKLNPSCKGTEI-----------WSGKDF---------GV--MQKSVSTE 465 (479)
Q Consensus 408 g~~~valfN~~~~~~~vtv~l~~lg~~l~~~~~~~~~~vrDl-----------W~g~~~---------g~--~~~~~~~~ 465 (479)
+.-+|++||-....-.-.....++--..+.. ...+.+.+|+ |+++.. -. -...++++
T Consensus 562 ~tGViG~FNcqGagw~~~~~~~~~~~~~~~~-~s~~v~~~Dv~~~~~~a~~~~w~~~~~vy~h~s~~l~~l~~~~~~~vt 640 (750)
T PLN02684 562 YTGVLGVYNCQGAAWSSTERKNIFHQTKTDS-LTGSIRGRDVHLIAEAATDPNWNGDCAVYCHSRGELITMPYNASLPVS 640 (750)
T ss_pred CCceEEEEeccCCccCccccccccCCCCCcc-ceeeecccccchhhhhccCCCCCCCEEEEEecCCeEEecCCCCceEEE
Confidence 5669999998754321111111110000000 1223344444 655431 11 12457788
Q ss_pred EcCCcEEEEEEEc
Q 011701 466 VETHGCALFVLNC 478 (479)
Q Consensus 466 l~~h~~~ll~lt~ 478 (479)
|++.+.-||.+.|
T Consensus 641 L~~~~~Ei~t~~P 653 (750)
T PLN02684 641 LKVLEHEIFTVTP 653 (750)
T ss_pred ecCCcEEEEEEee
Confidence 9999999988875
No 11
>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins. Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- D-glucopyranosyl-(1-->2)- O-beta- D-fructofuranoside) is a widespread oligosaccharide in plant seeds and other tissues. Raffinose synthase (2.4.1.82 from EC) is the key enzyme that channels sucrose into the raffinose oligosaccharide pathway [].
Probab=99.91 E-value=7e-22 Score=213.83 Aligned_cols=392 Identities=16% Similarity=0.205 Sum_probs=222.4
Q ss_pred eEeccccccCccCCHHHHHHHHHHHHh-ccccCCceEEEeccccccccccCccC---------CCCccc----ccCCCCC
Q 011701 38 RGWNSYDSFCWIISEQDFLQSADIVAK-RLLPHGYEYVVVDYLWYRKKVKDAHI---------DSEGID----LIDEWGR 103 (479)
Q Consensus 38 mGWnSW~~~~~~i~e~~i~~~ad~l~~-gl~~~Gy~yi~iDdgW~~~~~~g~~~---------~~~~~~----~~d~~G~ 103 (479)
+|||||++|+.++|++.|++.++.+++ |+. -++++||||||.-.+.+... ...+.. ..+++.+
T Consensus 197 lGwCTWdaf~~~v~~~~i~~~l~~L~~~gi~---~~~viIDDGWQ~~~~~~~~~~~~~~~~~~~g~q~~~rl~~~~en~k 273 (747)
T PF05691_consen 197 LGWCTWDAFYQDVTEEGILEGLKSLEEGGIP---PRFVIIDDGWQSVDNDGDDPSKDGMNLVQEGAQFPRRLTDFKENSK 273 (747)
T ss_pred hccccHHHhccccCHHHHHHHHHHHHhCCCC---ceEEEEecchhcccccCcccccccccccccccccchhhhhhhhhhh
Confidence 799999999999999999999998854 444 35999999999865433210 000000 0111112
Q ss_pred ceeCC-----CCCCCCCCCCChHHHHHHHHHc--CCe-EEEEeecCcccccccCCccccccCCCCCCcc--cCccchhhh
Q 011701 104 MVPDP-----DRWPSSKGGKGFTEVAKKVHDM--GLK-FGIHVMKGISNQAVNANTLIYDYDKKGPYTE--AGRQWRAQD 173 (479)
Q Consensus 104 ~~~d~-----~~FP~~~~~~Gmk~la~~ih~~--Glk-~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~--~g~~~~~~d 173 (479)
+..+. +.||. ||+.++++|+++ |+| .|+|.+--=.+-.+.|+.+..-. ....|.. .|-....+|
T Consensus 274 F~~~~~~~~~~~~~~-----GL~~~V~~ik~~~~~Ik~V~VWHAL~GYWgGi~P~~~~~~~-~k~~~~~~spg~~~~~~d 347 (747)
T PF05691_consen 274 FRAYKSGKSPEAFPS-----GLKHFVSDIKEKFPGIKYVYVWHALCGYWGGISPDGMLAYN-YKLVYPKLSPGLQGNMPD 347 (747)
T ss_pred hhhccCCCcccCCcc-----cHHHHHHHHHhhCCCCCEEEEeehhcceecCcCCCCccccc-cceeecccCCcccccCcc
Confidence 22222 35787 999999999998 786 58886531112222333332100 0000000 000001111
Q ss_pred hcccCCCCCCCCCCceeecCCchhHHHHHHHHHHHHhhcCccEEEecCCCC-----CCC-C-HH---HH-HHHHHHHHhh
Q 011701 174 IAIKEKPCAWMPHGFMAVNTKLGAGRAFLRSLHKQYADWSVDFVKHDCAFG-----DDL-D-EG---EI-SVVSEVFKGE 242 (479)
Q Consensus 174 i~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~-----~~~-~-~~---~y-~~~~~al~~~ 242 (479)
..... -..++.+.+++. .++.||+.+++.+++-|||+||+|.... ... . .+ .| .+|..++.+.
T Consensus 348 ~~~d~----~~~~g~glv~p~--~~~~FYd~~hsyL~s~GVDgVKVD~Q~~l~~l~~~~ggrv~la~ay~~AL~~S~~r~ 421 (747)
T PF05691_consen 348 LAVDS----IVKGGLGLVDPE--DAFRFYDDFHSYLASAGVDGVKVDVQAILETLGEGYGGRVELARAYQDALEASVARH 421 (747)
T ss_pred ccccc----cccCcccccCHH--HHHHHHHHHHHHHHHcCCCEEEEchhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHh
Confidence 10000 001233344433 4788999999999999999999997642 111 1 11 22 3455544434
Q ss_pred c-CCceEEecCCCCCCCcchHHhhhccccEEEecCCCCCChhh----------HHHHHHHHHHHHHhhhhcccCCCCCCC
Q 011701 243 H-NRPIIYSLSPGTSAAPDMAQKINGLANMYRVTGDDWDSWPD----------VAAHFSVARDFAAANMIGSQGLKGRSW 311 (479)
Q Consensus 243 ~-gr~i~l~~~~~~~~~p~~~~~~~~~a~~~Ris~D~~~~W~~----------~~~~~~~~~~~~~~~~~~~~g~~~~~w 311 (479)
. |+.++-|+|..+.. .|. + .......|+|+|.++.+.. ..+++..+.+ .++. +...|
T Consensus 422 F~~~~vI~CMsh~~~~--l~~-~-~~~~av~R~SDDF~P~~p~s~p~g~~w~h~~Hi~~nAyN----sL~~----g~~~~ 489 (747)
T PF05691_consen 422 FSGNGVINCMSHNPDN--LYH-S-TKQSAVVRNSDDFFPRDPASDPNGVFWLHTWHIAHNAYN----SLLL----GQFVW 489 (747)
T ss_pred CCCCCeEEecCCCccc--hhc-c-cccccceeccccccCCCCCCCccccchhhHHHHHHHHHH----HHHH----HhhcC
Confidence 4 46688877753221 121 1 1345789999999876553 2333332221 1222 13578
Q ss_pred CCCCCcCcccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCeEeecCCCCCChhhhh--cccCcceehcccCCCCCC
Q 011701 312 PDLDMLPLGWLTDANSTQGPYRACKLTLDEQKTQMTLWAMAKSPLMFGGDVRKLDDTTYG--LITNPTILEIDHYSSNNK 389 (479)
Q Consensus 312 nDpDml~~g~~~~~~~~~~~~~~~~lt~~E~~t~~tlwa~~~sPL~ig~Dl~~l~~~~~~--lL~N~eliainQd~~g~~ 389 (479)
+|.||+..-+ ...+.|.++.|++|+|++|+|.+-+-+-+.++ +|.+-.||+....++..+
T Consensus 490 PDwDMF~S~h------------------~~A~~HAaaRaiSGGPVYiSD~pG~hd~~LLk~LvlpDG~ilR~~~pg~Pt~ 551 (747)
T PF05691_consen 490 PDWDMFQSSH------------------PAAEFHAAARAISGGPVYISDKPGKHDFDLLKKLVLPDGSILRADHPGRPTR 551 (747)
T ss_pred CCcccccccC------------------ccHHHHHHHHhhcCCCEEEeeCCCCCCHHHHHHhhCCCCceeccccCCCCCh
Confidence 9999998542 23567999999999999999999887755544 456666777666443222
Q ss_pred Cccc----cC--CCeEEEEEECCCCCEEEEEEeCCCC---------------CeEEE--EEhhhhcccCCCC-----CCC
Q 011701 390 DAGA----NA--TGVRSWIATGRQGEIYLAFFNLNNA---------------KTAIS--AEIADLGKALPGW-----KLN 441 (479)
Q Consensus 390 ~~~~----~~--~~~~vw~~~l~~g~~~valfN~~~~---------------~~~vt--v~l~~lg~~l~~~-----~~~ 441 (479)
..+. .+ .-+.||...- ...+|++||.... +.++| +.-+++.. +... ...
T Consensus 552 d~Lf~dp~~d~~~lLKi~n~n~--~~gvig~FN~qgagw~~~~~~~~~~~~~~~~~t~~v~~~Dv~~-~~~~~~~~~~~~ 628 (747)
T PF05691_consen 552 DCLFEDPLRDGKSLLKIWNLNK--FTGVIGVFNCQGAGWCREERKNKSHDECPGTLTGSVRPSDVEW-ISEVAGADDGWN 628 (747)
T ss_pred hhhcccCCCCCceeEEEEecCC--ccceEEEEecCCCcccchhhhccccCCCCcceEeeccccccce-eccccccCcCCC
Confidence 2111 11 1246776543 3458999997532 12233 33333321 1100 012
Q ss_pred CceEEEEecCCCcceeec---cEEEEEEcCCcEEEEEEEc
Q 011701 442 PSCKGTEIWSGKDFGVMQ---KSVSTEVETHGCALFVLNC 478 (479)
Q Consensus 442 ~~~~vrDlW~g~~~g~~~---~~~~~~l~~h~~~ll~lt~ 478 (479)
..+.|+..=+++ +...+ .++.++|+|-+.-||.++|
T Consensus 629 ~~~avY~~~~~~-l~~l~~k~~~~~vtL~~~~~El~tv~P 667 (747)
T PF05691_consen 629 GDFAVYSHRSGE-LVLLPPKSESLPVTLKPLEFELFTVSP 667 (747)
T ss_pred ccEEEEEcCCCe-EEEecCCCCCceEEEcCcceEEEEEee
Confidence 345555544444 33333 3688999999999998876
No 12
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=99.89 E-value=4.3e-23 Score=212.32 Aligned_cols=176 Identities=18% Similarity=0.333 Sum_probs=137.3
Q ss_pred CccccCCCCCCceEeccccccCccCCHHHHHHHHHHHHhccccCCceEEEeccccccccccCccCCCCcccccCCCCCce
Q 011701 26 DGRETEHAILPPRGWNSYDSFCWIISEQDFLQSADIVAKRLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMV 105 (479)
Q Consensus 26 ~~~~~~~~~~PpmGWnSW~~~~~~i~e~~i~~~ad~l~~gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~ 105 (479)
+.++.-+.+..|||||||++++.+++++.++++++.. ++.|.+.|+|||||+.... + ..-.-|+|.
T Consensus 282 i~~~~~~~kprPi~~nsWea~Yfd~t~e~ile~vk~a----kk~gvE~FvlDDGwfg~rn----d------d~~slGDWl 347 (687)
T COG3345 282 IVPRPRVKKPRPIGWNSWEAYYFDFTEEEILENVKEA----KKFGVELFVLDDGWFGGRN----D------DLKSLGDWL 347 (687)
T ss_pred cCcccccCCCCcceeeceeeeeecCCHHHHHHHHHHH----hhcCeEEEEEccccccccC----c------chhhhhcee
Confidence 3333345556699999999999999999999999865 5678999999999996432 1 122469999
Q ss_pred eCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhhcccCC-----C
Q 011701 106 PDPDRWPSSKGGKGFTEVAKKVHDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIKEK-----P 180 (479)
Q Consensus 106 ~d~~~FP~~~~~~Gmk~la~~ih~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~-----~ 180 (479)
.|.+|||+ |+..|++.||+.||+||||+.|++ ++.+|.++.. ||+|..+--+.+.. -
T Consensus 348 v~seKfPs-----giE~li~~I~e~Gl~fGIWlePem----vs~dSdlfrq---------HPDWvvk~~G~p~~~~Rnqy 409 (687)
T COG3345 348 VNSEKFPS-----GIEELIEAIAENGLIFGIWLEPEM----VSEDSDLFRQ---------HPDWVVKVNGYPLMAGRNQY 409 (687)
T ss_pred cchhhccc-----cHHHHHHHHHHcCCccceeecchh----cccchHHHhh---------CCCeEEecCCccccccccch
Confidence 99999999 999999999999999999999986 4567888765 45565552221111 0
Q ss_pred CCCCCCCceeecCCchhHHHHHHHHHHHHh-hcCccEEEecCCCCCCCCHHHHH
Q 011701 181 CAWMPHGFMAVNTKLGAGRAFLRSLHKQYA-DWSVDFVKHDCAFGDDLDEGEIS 233 (479)
Q Consensus 181 c~~~~~~~~~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~~~~~~~~~~y~ 233 (479)
..|.....+++|.+++.++.+..+.+++++ +||+.++|+|+.+...+..++|.
T Consensus 410 vl~~s~p~vv~~l~~~l~qll~~~~v~ylkwdmnr~l~klg~~~~~~l~qqry~ 463 (687)
T COG3345 410 VLWLSNPIVVLDLSEDLVQLLLFHLVSYLKWDMNRELFKLGFLFWGALPQQRYQ 463 (687)
T ss_pred hhhccChHHHHHhhhHHHHHHHhhhHHHHHHHhCcceeecCCCCCccccchHHH
Confidence 113334567888999999999999999998 99999999999988777766654
No 13
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=99.89 E-value=1.2e-20 Score=202.55 Aligned_cols=390 Identities=15% Similarity=0.138 Sum_probs=220.1
Q ss_pred eEeccccccCccCCHHHHHHHHHHHHh-ccccCCceEEEeccccccccccCccC-CCCcccccC--------CCCCceeC
Q 011701 38 RGWNSYDSFCWIISEQDFLQSADIVAK-RLLPHGYEYVVVDYLWYRKKVKDAHI-DSEGIDLID--------EWGRMVPD 107 (479)
Q Consensus 38 mGWnSW~~~~~~i~e~~i~~~ad~l~~-gl~~~Gy~yi~iDdgW~~~~~~g~~~-~~~~~~~~d--------~~G~~~~d 107 (479)
+|||||++|+.+|||+.|++.++.+++ |.. -.+++||||||.-...+... ..++. .+. ..-++.+|
T Consensus 215 fGWCTWdAfy~~Vt~egI~~gl~~L~~~Gip---~~~vIIDDGWQsi~~d~~~~~~~~~~-~~~~~g~q~~~rL~~f~en 290 (777)
T PLN02711 215 FGWCTWDAFYLTVHPQGVWEGVKGLVDGGCP---PGLVLIDDGWQSICHDEDPISDQEGM-NRTVAGEQMPCRLLKFEEN 290 (777)
T ss_pred ceEEehhHhcccCCHHHHHHHHHHHHhCCCC---ccEEEEcCCcccccccCccccccccc-ccccccchhhhhhcccccc
Confidence 899999999999999999999998865 454 36999999999853221100 00000 000 11234455
Q ss_pred ---------CCCCCCCCCCCChHHHHHHHHHc--CCe-EEEEeecCcccccccCCccccccCCCCCCccc--Cccchhhh
Q 011701 108 ---------PDRWPSSKGGKGFTEVAKKVHDM--GLK-FGIHVMKGISNQAVNANTLIYDYDKKGPYTEA--GRQWRAQD 173 (479)
Q Consensus 108 ---------~~~FP~~~~~~Gmk~la~~ih~~--Glk-~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~--g~~~~~~d 173 (479)
+..||. |||.+++.|+++ |+| .|+|.+-.-.+-.+.|+.+.+.. ....|... |-.-+.+|
T Consensus 291 ~KF~~~~~~~~~~p~-----Glk~~v~~iK~~~~~vk~VyVWHAL~GYWGGv~P~~~~~~~-~~~~~p~~spg~~~~~~d 364 (777)
T PLN02711 291 YKFRDYVSPKSLSNK-----GMGAFIRDLKEEFKTVDYVYVWHALCGYWGGLRPNVPGLPE-SKVVAPKLSPGLKMTMED 364 (777)
T ss_pred ccccccccccCCCCC-----cHHHHHHHHHhhCCCCCEEEEeeeccCcccCcCCCCCCCcc-ceeeccccCccccccccc
Confidence 334565 999999999995 676 48886532222233344433210 00001000 00001111
Q ss_pred hcccCCCCCCCCCCceeecCCchhHHHHHHHHHHHHhhcCccEEEecCCCC-----CCC-CH-HHHH----HHHHHHHhh
Q 011701 174 IAIKEKPCAWMPHGFMAVNTKLGAGRAFLRSLHKQYADWSVDFVKHDCAFG-----DDL-DE-GEIS----VVSEVFKGE 242 (479)
Q Consensus 174 i~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~-----~~~-~~-~~y~----~~~~al~~~ 242 (479)
+.... -..++...+++. .+..||+.+...+++-|||+||+|...- ..+ .. +-.+ ++..++.+.
T Consensus 365 ~~~d~----~~~~g~glv~Pe--~~~~FY~~~hs~Las~GVDgVKVDvQ~~Le~l~~~~Ggrv~la~ay~~ALe~S~~r~ 438 (777)
T PLN02711 365 LAVDK----IVNNGVGLVPPE--LAYQMYEGLHSHLQSVGIDGVKVDVIHLLEMLCEEYGGRVELAKAYYKALTASVRKH 438 (777)
T ss_pred ccccc----cccCcccccCHH--HHHHHHHHHHHHHHHcCCCeEEEchhhhHhhhcccCCcHHHHHHHHHHHHHHHHHHh
Confidence 11000 011233445543 4688999999999999999999996531 111 11 1123 444444422
Q ss_pred c-CCceEEecCCCCCCCcchHHhhhccccEEEecCCCCCChhh----------HHHHHHHHHHHHHhhhhcccCCCCCCC
Q 011701 243 H-NRPIIYSLSPGTSAAPDMAQKINGLANMYRVTGDDWDSWPD----------VAAHFSVARDFAAANMIGSQGLKGRSW 311 (479)
Q Consensus 243 ~-gr~i~l~~~~~~~~~p~~~~~~~~~a~~~Ris~D~~~~W~~----------~~~~~~~~~~~~~~~~~~~~g~~~~~w 311 (479)
. ++-++-|+|...+ .+.-+ .+.....|+|+|.++.=.. -.+++..+.+ .++. +...|
T Consensus 439 F~~ng~I~CMs~~~d---~~~~~-tk~~av~R~SDDF~p~dP~sh~~g~~W~~~~Hi~~~AyN----SLll----g~~v~ 506 (777)
T PLN02711 439 FNGNGVIASMEHCND---FMFLG-TEAISLGRVGDDFWCTDPSGDPNGTFWLQGCHMVHCAYN----SLWM----GNFIH 506 (777)
T ss_pred CCCCCeEeecccCch---hhhcc-CcccceeeecccccCCCCccccccccccccceeeeehhh----hhhh----ccccc
Confidence 3 4557777764221 11100 1245789999999853221 1233222211 1222 23578
Q ss_pred CCCCCcCcccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCeEeecCCCCCChhhhh--cccCcceehcccCCCCCC
Q 011701 312 PDLDMLPLGWLTDANSTQGPYRACKLTLDEQKTQMTLWAMAKSPLMFGGDVRKLDDTTYG--LITNPTILEIDHYSSNNK 389 (479)
Q Consensus 312 nDpDml~~g~~~~~~~~~~~~~~~~lt~~E~~t~~tlwa~~~sPL~ig~Dl~~l~~~~~~--lL~N~eliainQd~~g~~ 389 (479)
||.||+..-+ .-.+.|.+..|++|+|++|||-+-+-+-+.++ +|.+-.|++....++..+
T Consensus 507 PDWDMF~S~H------------------p~A~~HAaaRAisGGPIYVSD~pG~Hdf~LLk~LvlpdGsIlR~~~pg~Ptr 568 (777)
T PLN02711 507 PDWDMFQSTH------------------PCAEFHAASRAISGGPIYVSDSVGKHNFPLLKRLVLPDGSILRCQYYALPTR 568 (777)
T ss_pred CCchhhhccC------------------chHHHHHHHHhhcCCCEEEecCCCCccHHHHHhhhCCCCcEecccCCCCccc
Confidence 9999998653 34577999999999999999988876655444 345555666655443322
Q ss_pred Cccc----cC--CCeEEEEEECCCCCEEEEEEeCCCCC-----------------eEEEEEhhhhcccCCCCC------C
Q 011701 390 DAGA----NA--TGVRSWIATGRQGEIYLAFFNLNNAK-----------------TAISAEIADLGKALPGWK------L 440 (479)
Q Consensus 390 ~~~~----~~--~~~~vw~~~l~~g~~~valfN~~~~~-----------------~~vtv~l~~lg~~l~~~~------~ 440 (479)
.-+. .+ .-+.||-.. .+.-+|++||-.... .+-.|+.+|+.. .+.. .
T Consensus 569 DcLF~DP~~dg~slLKIwn~n--k~tGviG~FNcqgagW~~~~~~~~~~~~~~~~vt~~v~~~Dv~w--~~~~~~~~~~~ 644 (777)
T PLN02711 569 DCLFEDPLHDGKTMLKIWNLN--KFTGVIGAFNCQGGGWCRETRRNKCASQFSHTVTAKASPKDIEW--NSGKSPISIEG 644 (777)
T ss_pred hhhccccccCCceEEEEEeec--CCcceEEEEEecCCcccchhhhcccccCCCCceEEEEchHHhcc--cCCCCCcCccC
Confidence 2111 11 224677654 344599999985433 345577777732 1100 1
Q ss_pred CCceEEEEecCCCcceee--ccEEEEEEcCCcEEEEEEEc
Q 011701 441 NPSCKGTEIWSGKDFGVM--QKSVSTEVETHGCALFVLNC 478 (479)
Q Consensus 441 ~~~~~vrDlW~g~~~g~~--~~~~~~~l~~h~~~ll~lt~ 478 (479)
...|.|+.-=+++ +... +..++++|++-+..||.+.|
T Consensus 645 ~~~y~vy~~~s~~-l~~l~~~~~l~vtL~~~~~Eiftv~P 683 (777)
T PLN02711 645 VQVFAVYLFQSKK-LVLSKPSENLEISLEPFNFELITVSP 683 (777)
T ss_pred ceeEEEEEecCCe-EEECCCCCceEEEecCcceEEEEEee
Confidence 2234444433443 2222 45789999999999999876
No 14
>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds
Probab=99.78 E-value=7.3e-17 Score=173.45 Aligned_cols=257 Identities=17% Similarity=0.124 Sum_probs=146.9
Q ss_pred CCceeecCCchhHHHHHHHHHHHHhhcCccEEEecCCCC-C----CCC--H---HHH-HHHHHHHHhhc-CCceEEecCC
Q 011701 186 HGFMAVNTKLGAGRAFLRSLHKQYADWSVDFVKHDCAFG-D----DLD--E---GEI-SVVSEVFKGEH-NRPIIYSLSP 253 (479)
Q Consensus 186 ~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~-~----~~~--~---~~y-~~~~~al~~~~-gr~i~l~~~~ 253 (479)
++...+|+. .+..||+.+...+++-|||+||+|...- + .+. . ..| .++...+++.. ++-++-|+|.
T Consensus 457 ~G~glv~P~--~~~~FYd~~hsyLas~GVDgVKVDvQ~~Le~L~~~~ggRv~La~ay~~al~~Sv~r~F~~ng~I~CM~~ 534 (865)
T PLN02982 457 GGIGLVHPS--QAGDFYDSMHSYLASVGITGVKVDVIHTLEYVCEEYGGRVELAKAYYDGLSESLAKNFNGTGIIASMQQ 534 (865)
T ss_pred CceeccCHH--HHHHHHHHHHHHHHHcCCCeEEEchhhhHHHhhccCCcHHHHHHHHHHHHHHHHHHhCCCCCeEeeccc
Confidence 345555543 3678999999999999999999997541 1 111 1 122 34555554344 3456766665
Q ss_pred CCCCCcchHHhhhccccEEEecCCCCCC------hhhH----HHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCccccc
Q 011701 254 GTSAAPDMAQKINGLANMYRVTGDDWDS------WPDV----AAHFSVARDFAAANMIGSQGLKGRSWPDLDMLPLGWLT 323 (479)
Q Consensus 254 ~~~~~p~~~~~~~~~a~~~Ris~D~~~~------W~~~----~~~~~~~~~~~~~~~~~~~g~~~~~wnDpDml~~g~~~ 323 (479)
.+.. .+.. .+..-+-|+|+|.++. |..+ .+++..+.+ .+++ +...|+|.||+..-+
T Consensus 535 ~~~~--~~~~--tk~sav~R~SDDF~p~dP~shp~g~~wlq~~Hi~~~AyN----SLl~----G~~v~PDWDMFqS~H-- 600 (865)
T PLN02982 535 CNDF--FFLG--TKQISMGRVGDDFWFQDPNGDPMGVYWLQGVHMIHCAYN----SMWM----GQIIQPDWDMFQSDH-- 600 (865)
T ss_pred Cchh--hhcc--CCcceeeeccccccCCCCCcCccccccccceeeeehhhh----hHhh----ccccccCchhccccC--
Confidence 3211 1111 1235677999999753 3222 123222211 1332 235899999998643
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCeEeecCCCCCChhhhh--cccCcceehcccCCCCCCCcccc------C
Q 011701 324 DANSTQGPYRACKLTLDEQKTQMTLWAMAKSPLMFGGDVRKLDDTTYG--LITNPTILEIDHYSSNNKDAGAN------A 395 (479)
Q Consensus 324 ~~~~~~~~~~~~~lt~~E~~t~~tlwa~~~sPL~ig~Dl~~l~~~~~~--lL~N~eliainQd~~g~~~~~~~------~ 395 (479)
.-.+.|.+..||+|+|+++||-+-+-+-+.+. +|..-.|++....++..+..+.. .
T Consensus 601 ----------------~~A~fHAaaRAIsGGPIYvSD~pG~Hdf~lLk~LvlpDG~IlR~~~pg~PTrDcLF~DPl~DGk 664 (865)
T PLN02982 601 ----------------LCAEFHAGSRAICGGPVYVSDSVGGHDFDLLKKLVFPDGTIPRCQHYALPTRDCLFKNPLFDKK 664 (865)
T ss_pred ----------------chHHHHHHHHhhcCCCEEEeeCCCCccHHHHHhhhcCCCceeccCCCCCCCcchhccCcccCCc
Confidence 34577999999999999999988887755544 33444455555544332222211 1
Q ss_pred CCeEEEEEECCCCCEEEEEEeCCCC---------------Ce--EEEEEhhhhcccCCC-----CCCCCceEEEEecCCC
Q 011701 396 TGVRSWIATGRQGEIYLAFFNLNNA---------------KT--AISAEIADLGKALPG-----WKLNPSCKGTEIWSGK 453 (479)
Q Consensus 396 ~~~~vw~~~l~~g~~~valfN~~~~---------------~~--~vtv~l~~lg~~l~~-----~~~~~~~~vrDlW~g~ 453 (479)
.-+.||-...-. -+|++||-... +. +-+|..+|+... .. ......+.|+.-=+++
T Consensus 665 s~LKIWN~Nk~~--GViG~FNCQGagW~~~~~~~~~~~~~~~~vtg~v~~~Dve~~-~~~~~a~~~~~~~~~vY~~~~~e 741 (865)
T PLN02982 665 TILKIWNFNKFG--GVIGAFNCQGAGWDPKEHRIKGYSECYKPVSGSVHVSDIEWD-QKPEASQMGEAEEYAVYLNQAEE 741 (865)
T ss_pred eEEEEEeccCcC--ceEEEEEeccCCCCchhccccccCCCCcceEEEEcHHHcccc-cccccccCCCcccEEEEEecCce
Confidence 224677554332 37899995332 12 344666666421 10 0012344555533333
Q ss_pred cceee---ccEEEEEEcCCcEEEEEEEc
Q 011701 454 DFGVM---QKSVSTEVETHGCALFVLNC 478 (479)
Q Consensus 454 ~~g~~---~~~~~~~l~~h~~~ll~lt~ 478 (479)
+-.. ...+.++|.+-...||.+.|
T Consensus 742 -l~~~~~~~~~~~vtL~~~e~elftv~P 768 (865)
T PLN02982 742 -LLLMTPKSEAIQITLQPSSFELFSFVP 768 (865)
T ss_pred -EEEecCCCCcceEEeccceeEEEEEee
Confidence 2211 24678999999999999876
No 15
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.78 E-value=3.7e-18 Score=172.18 Aligned_cols=202 Identities=15% Similarity=0.208 Sum_probs=137.2
Q ss_pred CCCceEeccccccCccCCHHHHHHHHHHHHhccccCCceEEEeccccccccccCccCCCCcccccCCCCCceeCCCCCCC
Q 011701 34 ILPPRGWNSYDSFCWIISEQDFLQSADIVAKRLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMVPDPDRWPS 113 (479)
Q Consensus 34 ~~PpmGWnSW~~~~~~i~e~~i~~~ad~l~~gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~~FP~ 113 (479)
.++|. ||||++++..+||++|++.++.+++. ...+++|+||++|+. ..|+++.|++|||+
T Consensus 12 ~~~p~-W~~W~~~~~~~s~~~v~~~~~~~~~~--~iP~d~i~iD~~w~~-----------------~~g~f~~d~~~FPd 71 (303)
T cd06592 12 FRSPI-WSTWARYKADINQETVLNYAQEIIDN--GFPNGQIEIDDNWET-----------------CYGDFDFDPTKFPD 71 (303)
T ss_pred hCCCc-cCChhhhccCcCHHHHHHHHHHHHHc--CCCCCeEEeCCCccc-----------------cCCccccChhhCCC
Confidence 57787 99999999999999999999987542 224789999999985 35899999999996
Q ss_pred CCCCCChHHHHHHHHHcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhhcc-cCCCCCCCCCCceeec
Q 011701 114 SKGGKGFTEVAKKVHDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIAI-KEKPCAWMPHGFMAVN 192 (479)
Q Consensus 114 ~~~~~Gmk~la~~ih~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~-~~~~c~~~~~~~~~lD 192 (479)
+++++++||++|+|+++|+.|++. ++++.+.+.. ..++..++... ....-.+.++..+.+|
T Consensus 72 ------p~~mi~~l~~~G~k~~l~i~P~i~-----~~s~~~~e~~-------~~g~~vk~~~g~~~~~~~~w~g~~~~~D 133 (303)
T cd06592 72 ------PKGMIDQLHDLGFRVTLWVHPFIN-----TDSENFREAV-------EKGYLVSEPSGDIPALTRWWNGTAAVLD 133 (303)
T ss_pred ------HHHHHHHHHHCCCeEEEEECCeeC-----CCCHHHHhhh-------hCCeEEECCCCCCCcccceecCCcceEe
Confidence 999999999999999999999874 2334332211 01222222110 0000112234456899
Q ss_pred CCchhHHHHHHHHHHHHh-hcCccEEEecCCCCCCC-----------CHHHHH-HHHHHHHhhcCCceEEecCCCCCCCc
Q 011701 193 TKLGAGRAFLRSLHKQYA-DWSVDFVKHDCAFGDDL-----------DEGEIS-VVSEVFKGEHNRPIIYSLSPGTSAAP 259 (479)
Q Consensus 193 ~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~~~~~~-----------~~~~y~-~~~~al~~~~gr~i~l~~~~~~~~~p 259 (479)
+|||++++|+.+.++.+. ++|||++|+|++....+ .+..|. .+.++.. +.+ +++++=|.
T Consensus 134 ftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~p~~~~~~~~~~~~n~y~~~~~~~~~-~~~-~~~~~Rsg------ 205 (303)
T cd06592 134 FTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGEASYLPQDYVTEDPLLNPDEYTRLYAEMVA-EFG-DLIEVRAG------ 205 (303)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCCcccCCcccccCCcccCHHHHHHHHHHHHH-hhc-cceEEEee------
Confidence 999999999988887766 99999999998753211 123453 5556665 444 66664331
Q ss_pred chHHhhhccccEEEecCCCCCChhhH
Q 011701 260 DMAQKINGLANMYRVTGDDWDSWPDV 285 (479)
Q Consensus 260 ~~~~~~~~~a~~~Ris~D~~~~W~~~ 285 (479)
|+ ....++-.| ++|...+|+..
T Consensus 206 -~~-g~~~~~~~w--~GD~~s~W~~~ 227 (303)
T cd06592 206 -WR-SQGLPLFVR--MMDKDSSWGGD 227 (303)
T ss_pred -ee-cCCCCeeEE--cCCCCCCCCCC
Confidence 11 001122333 78888899876
No 16
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=99.63 E-value=9.4e-15 Score=147.80 Aligned_cols=197 Identities=15% Similarity=0.207 Sum_probs=132.3
Q ss_pred cCCHHHHHHHHHHHHh-ccccCCceEEEeccccccccccCccCCCCcccccCCCCCceeCCCCCCCCCCCCChHHHHHHH
Q 011701 49 IISEQDFLQSADIVAK-RLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMVPDPDRWPSSKGGKGFTEVAKKV 127 (479)
Q Consensus 49 ~i~e~~i~~~ad~l~~-gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~~FP~~~~~~Gmk~la~~i 127 (479)
..|++++++.++.+++ ++. ++.|.||++|+.. ...|.++.|++|||+ +++++++|
T Consensus 20 y~~~~~v~~~~~~~~~~~iP---~d~~~lD~~w~~~---------------~~~~~f~~d~~~FPd------~~~~i~~l 75 (308)
T cd06593 20 YYDEEEVNEFADGMRERNLP---CDVIHLDCFWMKE---------------FQWCDFEFDPDRFPD------PEGMLSRL 75 (308)
T ss_pred CCCHHHHHHHHHHHHHcCCC---eeEEEEecccccC---------------CcceeeEECcccCCC------HHHHHHHH
Confidence 4899999999987753 332 6899999999953 124689999999996 99999999
Q ss_pred HHcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhhcccCCCCCCCCCCceeecCCchhHHHHHHHHHH
Q 011701 128 HDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGRAFLRSLHK 207 (479)
Q Consensus 128 h~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~~ 207 (479)
|++|+|+++|+.|++. .+++++.+... .++..++.........+.++....+|+++|++++|+.+..+
T Consensus 76 ~~~G~~~~~~~~P~i~-----~~~~~~~e~~~-------~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~ 143 (308)
T cd06593 76 KEKGFKVCLWINPYIA-----QKSPLFKEAAE-------KGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLK 143 (308)
T ss_pred HHCCCeEEEEecCCCC-----CCchhHHHHHH-------CCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHH
Confidence 9999999999999874 23444432110 12333332111111122344557899999999999999889
Q ss_pred HHhhcCccEEEecCCCCCC--------CC---H-HHH-----HHHHHHHHhhcC--CceEEecCCCCCCCcchHHhhhcc
Q 011701 208 QYADWSVDFVKHDCAFGDD--------LD---E-GEI-----SVVSEVFKGEHN--RPIIYSLSPGTSAAPDMAQKINGL 268 (479)
Q Consensus 208 ~~a~wGvdylK~D~~~~~~--------~~---~-~~y-----~~~~~al~~~~g--r~i~l~~~~~~~~~p~~~~~~~~~ 268 (479)
.+.++|||++|+|++..-. .+ . ..| +++.+++++..+ ||++++=+-... ...+
T Consensus 144 ~~~~~Gid~~~~D~~e~~p~~~~~~~g~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~~Rs~~~G--------sqry 215 (308)
T cd06593 144 PLLDMGVDCFKTDFGERIPTDVVYYDGSDGEKMHNYYALLYNKAVYEATKEVKGEGEAVVWARSAWAG--------SQKY 215 (308)
T ss_pred HHHHhCCcEEecCCCCCCCccccccCCCCcceeeeHHHHHHHHHHHHHHHHhcCCCCeEEEEcCCccc--------cccC
Confidence 9999999999999874210 11 1 112 345566663334 578886542110 1234
Q ss_pred ccEEEecCCCCCChhhHHHHHHH
Q 011701 269 ANMYRVTGDDWDSWPDVAAHFSV 291 (479)
Q Consensus 269 a~~~Ris~D~~~~W~~~~~~~~~ 291 (479)
+-.| ++|...+|+.+...+..
T Consensus 216 ~~~w--~GD~~s~w~~L~~~i~~ 236 (308)
T cd06593 216 PVHW--GGDCESTFEGMAESLRG 236 (308)
T ss_pred CCEE--CCCcccCHHHHHHHHHH
Confidence 5555 89999999987766554
No 17
>PRK10658 putative alpha-glucosidase; Provisional
Probab=99.36 E-value=5.1e-11 Score=131.54 Aligned_cols=212 Identities=19% Similarity=0.257 Sum_probs=139.2
Q ss_pred CCCCCCc---eE-eccccccCccCCHHHHHHHHHHHHh-ccccCCceEEEeccccccccccCccCCCCcccccCCCCCce
Q 011701 31 EHAILPP---RG-WNSYDSFCWIISEQDFLQSADIVAK-RLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMV 105 (479)
Q Consensus 31 ~~~~~Pp---mG-WnSW~~~~~~i~e~~i~~~ad~l~~-gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~ 105 (479)
|.++.|| +| |.|. .|..+.+|+.|++.++.+.+ ++. .+.|.+|+.|+... .++.++
T Consensus 258 Grp~lpP~WalG~w~s~-~~~~~~~e~~v~~~~~~~r~~~iP---~d~i~lD~~w~~~~---------------~~~~f~ 318 (665)
T PRK10658 258 GRPALPPAWSFGLWLTT-SFTTNYDEATVNSFIDGMAERDLP---LHVFHFDCFWMKEF---------------QWCDFE 318 (665)
T ss_pred CCCCCCchhhhheeeec-ccccCCCHHHHHHHHHHHHHcCCC---ceEEEEchhhhcCC---------------ceeeeE
Confidence 5566677 34 4443 24445789999999998754 443 58999999998631 357899
Q ss_pred eCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhhcccCCCCCCCC
Q 011701 106 PDPDRWPSSKGGKGFTEVAKKVHDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIKEKPCAWMP 185 (479)
Q Consensus 106 ~d~~~FP~~~~~~Gmk~la~~ih~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~ 185 (479)
.|+++||+ .+.|+++||++|+|+.+|+.|++. ++++++.+....+ +..++.......-...+
T Consensus 319 wd~~~FPd------p~~mi~~L~~~G~k~~~~i~P~i~-----~~s~~f~e~~~~g-------y~vk~~~G~~~~~~~W~ 380 (665)
T PRK10658 319 WDPRTFPD------PEGMLKRLKAKGLKICVWINPYIA-----QKSPLFKEGKEKG-------YLLKRPDGSVWQWDKWQ 380 (665)
T ss_pred EChhhCCC------HHHHHHHHHHCCCEEEEeccCCcC-----CCchHHHHHHHCC-------eEEECCCCCEeeeeecC
Confidence 99999996 999999999999999999999875 3455553322111 22222111000000123
Q ss_pred CCceeecCCchhHHHHHHHHHHHHhhcCccEEEecCCCC--------CCCCHH----HH-----HHHHHHHHhhcC--Cc
Q 011701 186 HGFMAVNTKLGAGRAFLRSLHKQYADWSVDFVKHDCAFG--------DDLDEG----EI-----SVVSEVFKGEHN--RP 246 (479)
Q Consensus 186 ~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~--------~~~~~~----~y-----~~~~~al~~~~g--r~ 246 (479)
++...+|+|||++++|+.+..+.+.+.|||.+|.|+.-. ...+.. .| ++..+++++..| |+
T Consensus 381 g~~~~~Dftnp~ar~W~~~~~~~l~d~Gvdgfw~D~gE~~p~d~~~~~G~~~~~~hN~Y~~l~~ka~~e~l~~~~~~~r~ 460 (665)
T PRK10658 381 PGMAIVDFTNPDACKWYADKLKGLLDMGVDCFKTDFGERIPTDVVWFDGSDPQKMHNYYTYLYNKTVFDVLKETRGEGEA 460 (665)
T ss_pred CCceeecCCCHHHHHHHHHHHHHHHhcCCcEEEecCCceeeccceecCCCcHHHhcchhHHHHHHHHHHHHHHhcCCCce
Confidence 455689999999999998888889999999999997531 111221 12 244556663333 67
Q ss_pred eEEecCC--CCCCCcchHHhhhccccEEEecCCCCCChhhHHHHHHH
Q 011701 247 IIYSLSP--GTSAAPDMAQKINGLANMYRVTGDDWDSWPDVAAHFSV 291 (479)
Q Consensus 247 i~l~~~~--~~~~~p~~~~~~~~~a~~~Ris~D~~~~W~~~~~~~~~ 291 (479)
++++=|. |. ++++-. =++|+..+|+.+..++..
T Consensus 461 ~i~tRs~~aGs----------Qry~~~--WsGD~~stw~~l~~si~~ 495 (665)
T PRK10658 461 VLFARSATVGG----------QQFPVH--WGGDCYSNYESMAESLRG 495 (665)
T ss_pred EEEEecccCCC----------CCCCCE--ECCCCCCCHHHHHHHHHH
Confidence 7776552 22 133322 468999999998776543
No 18
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=99.31 E-value=1.2e-10 Score=119.45 Aligned_cols=197 Identities=18% Similarity=0.198 Sum_probs=126.0
Q ss_pred cCCHHHHHHHHHHHH-hccccCCceEEEeccccccccccCccCCCCcccccCCCCCceeCCCCCCCCCCCCChHHHHHHH
Q 011701 49 IISEQDFLQSADIVA-KRLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMVPDPDRWPSSKGGKGFTEVAKKV 127 (479)
Q Consensus 49 ~i~e~~i~~~ad~l~-~gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~~FP~~~~~~Gmk~la~~i 127 (479)
.-|+++|++.++.+. .++. ++.|.||..|+. .++.+..|+++||+ .+.|++.+
T Consensus 20 y~~~~~v~~~~~~~~~~~iP---~d~i~lD~~~~~-----------------~~~~f~~d~~~fPd------p~~m~~~l 73 (339)
T cd06604 20 YYPEEEVREIADEFRERDIP---CDAIYLDIDYMD-----------------GYRVFTWDKERFPD------PKELIKEL 73 (339)
T ss_pred CCCHHHHHHHHHHHHHhCCC---cceEEECchhhC-----------------CCCceeeccccCCC------HHHHHHHH
Confidence 358999999999774 3443 689999999984 25778999999996 99999999
Q ss_pred HHcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhhcccCCCCCCCCCCceeecCCchhHHHHHHHHHH
Q 011701 128 HDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGRAFLRSLHK 207 (479)
Q Consensus 128 h~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~~ 207 (479)
|++|+|+-+|+.|++..+ ++++.+.+... .++..++.......-.+.++....+|.+||++++|+.+..+
T Consensus 74 ~~~g~~~~~~~~P~v~~~---~~~~~~~e~~~-------~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~ 143 (339)
T cd06604 74 HEQGFKVVTIIDPGVKVD---PGYDVYEEGLE-------NDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYK 143 (339)
T ss_pred HHCCCEEEEEEeCceeCC---CCChHHHHHHH-------CCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHH
Confidence 999999999999988532 22333322110 01111111100000012234345789999999999988888
Q ss_pred HHhhcCccEEEecCCCCCC---------------------CCHH----HH-----HHHHHHHHhh--cCCceEEecCCCC
Q 011701 208 QYADWSVDFVKHDCAFGDD---------------------LDEG----EI-----SVVSEVFKGE--HNRPIIYSLSPGT 255 (479)
Q Consensus 208 ~~a~wGvdylK~D~~~~~~---------------------~~~~----~y-----~~~~~al~~~--~gr~i~l~~~~~~ 255 (479)
.+.+.|||++|+|++-... .+.. .| ++..+++++. -.||++++=+...
T Consensus 144 ~~~~~Gvdg~w~D~~Ep~~~~~~~~~~~p~~~~~~~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~ 223 (339)
T cd06604 144 KFVDLGVDGIWNDMNEPAVFNTPGKTTMPRDAVHRLDGGGGTHEEVHNVYGLLMARATYEGLKKARPNERPFILTRAGYA 223 (339)
T ss_pred HHhhCCCceEeecCCCccccCCcccccCCccceeeCCCCCCcHhHhcchhhHHHHHHHHHHHHHhCCCCCcEEEEecccc
Confidence 8889999999999763210 0111 12 2344555532 3478887655211
Q ss_pred CCCcchHHhhhccccEEEecCCCCCChhhHHHHHHH
Q 011701 256 SAAPDMAQKINGLANMYRVTGDDWDSWPDVAAHFSV 291 (479)
Q Consensus 256 ~~~p~~~~~~~~~a~~~Ris~D~~~~W~~~~~~~~~ 291 (479)
. .+.++- =-++|...+|+.+...+..
T Consensus 224 G--------~qry~~--~W~GD~~ssW~~L~~~i~~ 249 (339)
T cd06604 224 G--------IQRYAA--VWTGDNRSSWEHLRLSIPM 249 (339)
T ss_pred c--------cccccc--ccCCcccCCHHHHHHHHHH
Confidence 0 012332 2567889999988766554
No 19
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=99.24 E-value=8.2e-11 Score=124.84 Aligned_cols=217 Identities=18% Similarity=0.229 Sum_probs=125.7
Q ss_pred CCCCCCceEe--ccccccCccCCHHHHHHHHHHHHhccccCCceEEEeccccccccccCccCCCCcccccCCCCCceeCC
Q 011701 31 EHAILPPRGW--NSYDSFCWIISEQDFLQSADIVAKRLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMVPDP 108 (479)
Q Consensus 31 ~~~~~PpmGW--nSW~~~~~~i~e~~i~~~ad~l~~gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~ 108 (479)
|-++.||. | --|.+-...-|++++++.++.+.+. ...++.+.||+.|+.. ++.+..|+
T Consensus 20 G~~~~pP~-walG~~~~~~~~~~~~~v~~~i~~~~~~--~iP~d~~~iD~~~~~~-----------------~~~f~~d~ 79 (441)
T PF01055_consen 20 GRPPLPPR-WALGFWQSRWGYYNQDEVREVIDRYRSN--GIPLDVIWIDDDYQDG-----------------YGDFTWDP 79 (441)
T ss_dssp SSS----G-GGGSEEEEESTBTSHHHHHHHHHHHHHT--T--EEEEEE-GGGSBT-----------------TBTT-B-T
T ss_pred CCCCCCch-hhhceEeecCcCCCHHHHHHHHHHHHHc--CCCccceecccccccc-----------------cccccccc
Confidence 55667775 3 2222222336799999999887542 3346899999999863 57889999
Q ss_pred CCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhhcccCCCCCCCCCCc
Q 011701 109 DRWPSSKGGKGFTEVAKKVHDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIKEKPCAWMPHGF 188 (479)
Q Consensus 109 ~~FP~~~~~~Gmk~la~~ih~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~~ 188 (479)
++||+ ++.+++.||++|+|+++|+.|++..+.. ..+.+.+... .++..++.........+.++..
T Consensus 80 ~~FPd------~~~~~~~l~~~G~~~~~~~~P~v~~~~~--~~~~~~~~~~-------~~~~v~~~~g~~~~~~~w~g~~ 144 (441)
T PF01055_consen 80 ERFPD------PKQMIDELHDQGIKVVLWVHPFVSNDSP--DYENYDEAKE-------KGYLVKNPDGSPYIGRVWPGKG 144 (441)
T ss_dssp TTTTT------HHHHHHHHHHTT-EEEEEEESEEETTTT--B-HHHHHHHH-------TT-BEBCTTSSB-EEEETTEEE
T ss_pred ccccc------hHHHHHhHhhCCcEEEEEeecccCCCCC--cchhhhhHhh-------cCceeecccCCcccccccCCcc
Confidence 99995 9999999999999999999998864322 0112211000 1111111100000011123445
Q ss_pred eeecCCchhHHHHHHHHHHHHhhc-CccEEEecCCCCCC----------------CCHH----HH-----HHHHHHHHh-
Q 011701 189 MAVNTKLGAGRAFLRSLHKQYADW-SVDFVKHDCAFGDD----------------LDEG----EI-----SVVSEVFKG- 241 (479)
Q Consensus 189 ~~lD~t~p~~~~~~~~~~~~~a~w-GvdylK~D~~~~~~----------------~~~~----~y-----~~~~~al~~- 241 (479)
..+|.+||++++|+.+..+.+.+. |||++|+|+.-... .... .| +...+++++
T Consensus 145 ~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~ 224 (441)
T PF01055_consen 145 GFIDFTNPEARDWWKEQLKELLDDYGVDGWWLDFGEPSSFDSNNTLPEDAVHHDGYSGYEMHNLYGLLYAKATYEALREI 224 (441)
T ss_dssp EEB-TTSHHHHHHHHHHHHHHHTTST-SEEEEESTTTBSSTTTBSBCTTEECTTECEHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred cccCCCChhHHHHHHHHHHHHHhccCCceEEeecCCcccccccccCcccceecCCCCchheeccccccchhhhhhhhhhc
Confidence 789999999999998877877777 99999999853321 0111 23 234555542
Q ss_pred -hcCCceEEecCCCCCCCcchHHhhhccccEEEecCCCCCChhhHHHHHHHH
Q 011701 242 -EHNRPIIYSLSPGTSAAPDMAQKINGLANMYRVTGDDWDSWPDVAAHFSVA 292 (479)
Q Consensus 242 -~~gr~i~l~~~~~~~~~p~~~~~~~~~a~~~Ris~D~~~~W~~~~~~~~~~ 292 (479)
...||++++-+... - ...++..| ++|+..+|..+...+...
T Consensus 225 ~~~~r~~~~sRs~~~-------G-~qr~~~~w--~GD~~s~w~~L~~~i~~~ 266 (441)
T PF01055_consen 225 DPNKRPFIFSRSGWA-------G-SQRYGGHW--SGDNSSSWDGLRSSIPAM 266 (441)
T ss_dssp STTSC-EEEESSEET-------T-GGGTCEEE--ECSSBSSHHHHHHHHHHH
T ss_pred cCCCCcceeecccCC-------C-CCccceee--cccccccHHHHHHHHHHH
Confidence 25578887765211 0 12355554 789999999988776643
No 20
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.20 E-value=3.7e-10 Score=114.76 Aligned_cols=198 Identities=13% Similarity=0.108 Sum_probs=127.2
Q ss_pred CCHHHHHHHHHHHHh-ccccCCceEEEeccccccccccCccCCCCcccccCCCCCceeCCCCCCCCCCCCChHHHHHHHH
Q 011701 50 ISEQDFLQSADIVAK-RLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMVPDPDRWPSSKGGKGFTEVAKKVH 128 (479)
Q Consensus 50 i~e~~i~~~ad~l~~-gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~~FP~~~~~~Gmk~la~~ih 128 (479)
-+++++++.++.+.+ ++. .+.|.||.+|+..... ...+|.++.|+++||+ .+.|+++||
T Consensus 21 ~~~~~v~~~~~~~~~~~iP---~d~i~lD~~w~~~~~~-----------~~~~~~f~wd~~~FPd------p~~mi~~L~ 80 (317)
T cd06598 21 RNWQEVDDTIKTLREKDFP---LDAAILDLYWFGKDID-----------KGHMGNLDWDRKAFPD------PAGMIADLA 80 (317)
T ss_pred CCHHHHHHHHHHHHHhCCC---ceEEEEechhhcCccc-----------CCceeeeEeccccCCC------HHHHHHHHH
Confidence 579999999987743 443 6899999999864210 0246889999999996 999999999
Q ss_pred HcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhhc--ccCCCCCCCCCCceeecCCchhHHHHHHHHH
Q 011701 129 DMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIA--IKEKPCAWMPHGFMAVNTKLGAGRAFLRSLH 206 (479)
Q Consensus 129 ~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~--~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~ 206 (479)
++|+|+-+|+.|++.. +++.+.+....+ +...+.. .+.... +.++.-..+|.|+|++++|+.+..
T Consensus 81 ~~G~k~~~~v~P~v~~-----~~~~y~e~~~~g-------~l~~~~~~~~~~~~~-~w~g~~~~~Dftnp~a~~w~~~~~ 147 (317)
T cd06598 81 KKGVKTIVITEPFVLK-----NSKNWGEAVKAG-------ALLKKDQGGVPTLFD-FWFGNTGLIDWFDPAAQAWFHDNY 147 (317)
T ss_pred HcCCcEEEEEcCcccC-----CchhHHHHHhCC-------CEEEECCCCCEeeee-ccCCCccccCCCCHHHHHHHHHHH
Confidence 9999999999998753 233332211111 1111100 000011 223334689999999999998888
Q ss_pred HHHhhcCccEEEecCCCCCCC---------CHH----HH-----HHHHHHHHh--hcCCceEEecCC--CCCCCcchHHh
Q 011701 207 KQYADWSVDFVKHDCAFGDDL---------DEG----EI-----SVVSEVFKG--EHNRPIIYSLSP--GTSAAPDMAQK 264 (479)
Q Consensus 207 ~~~a~wGvdylK~D~~~~~~~---------~~~----~y-----~~~~~al~~--~~gr~i~l~~~~--~~~~~p~~~~~ 264 (479)
+.+.+.|||++|.|++-.... ... .| ++..+++++ ...||++++=+. |.
T Consensus 148 ~~~~~~Gvdg~w~D~~Ep~~~~~~~~~~~g~~~~~hN~y~~~~~~~~~e~~~~~~~~~r~~~~~Rs~~~Gs--------- 218 (317)
T cd06598 148 KKLIDQGVTGWWGDLGEPEVHPPDMCHHKGKAAEVHNIYGHLWAKSIYEGYQQNYPNERPFILMRAGFAGS--------- 218 (317)
T ss_pred HHhhhCCccEEEecCCCccccCCccccCCCcHhHHhhHHHHHHHHHHHHHHHHhcCCCCeEEEEecCcCcc---------
Confidence 889999999999998742100 111 13 233445542 234778775542 21
Q ss_pred hhccccEEEecCCCCCChhhHHHHHHH
Q 011701 265 INGLANMYRVTGDDWDSWPDVAAHFSV 291 (479)
Q Consensus 265 ~~~~a~~~Ris~D~~~~W~~~~~~~~~ 291 (479)
.+++.+ -=++|...+|+.+..++..
T Consensus 219 -qry~~~-~WsGD~~s~W~~L~~~i~~ 243 (317)
T cd06598 219 -QRYGVI-PWSGDVGRTWDGLKSQPNA 243 (317)
T ss_pred -ccCcCC-ccCCCCcCCHHHHHHHHHH
Confidence 123211 1248899999988876654
No 21
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=99.19 E-value=1.1e-09 Score=112.36 Aligned_cols=199 Identities=13% Similarity=0.079 Sum_probs=125.5
Q ss_pred CCHHHHHHHHHHHHh-ccccCCceEEEeccccccccccCccCCCCcccccCCCCCceeCCCCCCCCCCCCCh--HHHHHH
Q 011701 50 ISEQDFLQSADIVAK-RLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMVPDPDRWPSSKGGKGF--TEVAKK 126 (479)
Q Consensus 50 i~e~~i~~~ad~l~~-gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~~FP~~~~~~Gm--k~la~~ 126 (479)
-++++|++.++.+.+ ++. .+.|.||.+|+.. ++.++.|+++||+ . +.++++
T Consensus 21 ~~~~~v~~~~~~~r~~~iP---~d~i~lD~~~~~~-----------------~~~f~~d~~~FPd------p~~~~mi~~ 74 (339)
T cd06602 21 KNVDEVKEVVENMRAAGIP---LDVQWNDIDYMDR-----------------RRDFTLDPVRFPG------LKMPEFVDE 74 (339)
T ss_pred CCHHHHHHHHHHHHHhCCC---cceEEECcccccC-----------------ccceecccccCCC------ccHHHHHHH
Confidence 479999999997744 443 5789999999852 5889999999997 7 999999
Q ss_pred HHHcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhhcccCCCCCCCCCCceeecCCchhHHHHHHHHH
Q 011701 127 VHDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGRAFLRSLH 206 (479)
Q Consensus 127 ih~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~ 206 (479)
||++|+|+-+|+.|++......++++.+.+... .++..++.........+.++....+|.|+|++++|+.+..
T Consensus 75 L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~~~-------~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 147 (339)
T cd06602 75 LHANGQHYVPILDPAISANEPTGSYPPYDRGLE-------MDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEI 147 (339)
T ss_pred HHHCCCEEEEEEeCccccCcCCCCCHHHHHHHH-------CCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHH
Confidence 999999999999999853211122333321110 1122221111001111224444568999999999998877
Q ss_pred HH-HhhcCccEEEecCCCCCCC-CHH-HH-----HHHHHHHHhhcC-CceEEecCCCCCCCcchHHhhhccccEEEecCC
Q 011701 207 KQ-YADWSVDFVKHDCAFGDDL-DEG-EI-----SVVSEVFKGEHN-RPIIYSLSPGTSAAPDMAQKINGLANMYRVTGD 277 (479)
Q Consensus 207 ~~-~a~wGvdylK~D~~~~~~~-~~~-~y-----~~~~~al~~~~g-r~i~l~~~~~~~~~p~~~~~~~~~a~~~Ris~D 277 (479)
+. +.+.|||++|.|+.-.... ... .| ++..+++++..+ |+++++=+..... ..++- =-++|
T Consensus 148 ~~~~~~~Gvdg~w~D~~Ep~~~~~~hN~y~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~--------qry~~--~w~GD 217 (339)
T cd06602 148 KDFHDQVPFDGLWIDMNEPSNFYDVHNLYGLSEAIATYKALQSIPGKRPFVISRSTFPGS--------GRYAG--HWLGD 217 (339)
T ss_pred HHHHhcCCCcEEEecCCCCchHhhhcchhhHHHHHHHHHHHHhcCCCCCEEEEecCcccc--------cccce--eECCC
Confidence 76 5679999999998643211 111 12 234455553333 6777765421110 12332 25789
Q ss_pred CCCChhhHHHHHHH
Q 011701 278 DWDSWPDVAAHFSV 291 (479)
Q Consensus 278 ~~~~W~~~~~~~~~ 291 (479)
+..+|+.+..++..
T Consensus 218 ~~s~W~~L~~~i~~ 231 (339)
T cd06602 218 NASTWEDLRYSIIG 231 (339)
T ss_pred ccCCHHHHHHHHHH
Confidence 99999988766554
No 22
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=99.18 E-value=1.5e-09 Score=110.28 Aligned_cols=196 Identities=18% Similarity=0.185 Sum_probs=125.1
Q ss_pred CCHHHHHHHHHHHHh-ccccCCceEEEeccccccccccCccCCCCcccccCCCCCceeCCCCCCCCCCCCChHHHHHHHH
Q 011701 50 ISEQDFLQSADIVAK-RLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMVPDPDRWPSSKGGKGFTEVAKKVH 128 (479)
Q Consensus 50 i~e~~i~~~ad~l~~-gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~~FP~~~~~~Gmk~la~~ih 128 (479)
-|+++|++.++.+.+ ++. .+.|.||..|+. .++.++.|+++||+ .+.++++||
T Consensus 21 ~~~~~v~~~~~~~~~~~iP---~d~i~lD~~~~~-----------------~~~~f~~d~~~FPd------p~~~i~~l~ 74 (317)
T cd06600 21 YPQDKVVEVVDIMQKEGFP---YDVVFLDIHYMD-----------------SYRLFTWDPYRFPE------PKKLIDELH 74 (317)
T ss_pred CCHHHHHHHHHHHHHcCCC---cceEEEChhhhC-----------------CCCceeechhcCCC------HHHHHHHHH
Confidence 579999999997754 333 689999999974 25778899999996 999999999
Q ss_pred HcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhhcccCCCCCCCCCCceeecCCchhHHHHHHHHHHH
Q 011701 129 DMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGRAFLRSLHKQ 208 (479)
Q Consensus 129 ~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~~~ 208 (479)
++|+|+-+|+.|++... ++.+.+.+... .++..++.........+.|+.-..+|.|||++++|+.+.++.
T Consensus 75 ~~g~k~~~~~~P~i~~~---~~~~~~~~~~~-------~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~ 144 (317)
T cd06600 75 KRNVKLVTIVDPGIRVD---QNYSPFLSGMD-------KGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSE 144 (317)
T ss_pred HCCCEEEEEeeccccCC---CCChHHHHHHH-------CCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHH
Confidence 99999999999998532 11222211000 112221111000011122444457999999999999887777
Q ss_pred Hh-hcCccEEEecCCCCCCC-CHH-HH-----HHHHHHHHhh--cCCceEEecCCCCCCCcchHHhhhccccEEEecCCC
Q 011701 209 YA-DWSVDFVKHDCAFGDDL-DEG-EI-----SVVSEVFKGE--HNRPIIYSLSPGTSAAPDMAQKINGLANMYRVTGDD 278 (479)
Q Consensus 209 ~a-~wGvdylK~D~~~~~~~-~~~-~y-----~~~~~al~~~--~gr~i~l~~~~~~~~~p~~~~~~~~~a~~~Ris~D~ 278 (479)
+. +.|||++|+|++-.... ... .| .+..+++++. ..||++++=|..... +.++- =-++|.
T Consensus 145 ~~~~~gvdg~w~D~~Ep~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~--------qry~~--~W~GD~ 214 (317)
T cd06600 145 WLNSQGVDGIWLDMNEPSDFEKVHNLYGLYEAMATAEGFRTSHPRNRIFILTRSGFAGS--------QKYAA--IWTGDN 214 (317)
T ss_pred HhhcCCCceEEeeCCCCccHHHhcchhhHHHHHHHHHHHHHhcCCCCceEEEecccccc--------CCccc--eECCcc
Confidence 65 99999999998643211 001 12 2234445422 357888876631110 12332 357788
Q ss_pred CCChhhHHHHHHH
Q 011701 279 WDSWPDVAAHFSV 291 (479)
Q Consensus 279 ~~~W~~~~~~~~~ 291 (479)
..+|+.+...+..
T Consensus 215 ~s~W~~L~~~i~~ 227 (317)
T cd06600 215 TASWDDLKLSIPL 227 (317)
T ss_pred cccHHHHHHHHHH
Confidence 8999988766554
No 23
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.17 E-value=5e-09 Score=105.36 Aligned_cols=208 Identities=20% Similarity=0.234 Sum_probs=130.6
Q ss_pred CCCCCCc---eEe--ccccccCccCCHHHHHHHHHHHHh-ccccCCceEEEeccccccccccCccCCCCcccccCCCCCc
Q 011701 31 EHAILPP---RGW--NSYDSFCWIISEQDFLQSADIVAK-RLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRM 104 (479)
Q Consensus 31 ~~~~~Pp---mGW--nSW~~~~~~i~e~~i~~~ad~l~~-gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~ 104 (479)
|.++.|| +|+ |.|. ..|+++|++.|+-+.+ ++. ++.|.||..|+...... ...+.++.+
T Consensus 2 G~~~~~P~walG~~qsr~~----y~s~~ev~~v~~~~r~~~iP---~D~i~lD~dw~~~~~~~--------~~~~~~~~f 66 (292)
T cd06595 2 GKIPLLPRYAFGNWWSRYW----PYSDEEYLALMDRFKKHNIP---LDVLVIDMDWHVTDIPS--------KYGSGWTGY 66 (292)
T ss_pred CCCCCCchHHHHhHhhCCc----CCCHHHHHHHHHHHHHhCCC---ccEEEEecccccccccc--------cccCCccee
Confidence 5566777 343 3332 3589999999997743 444 68999999998642100 012457899
Q ss_pred eeCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhhcccCCCCCCC
Q 011701 105 VPDPDRWPSSKGGKGFTEVAKKVHDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIKEKPCAWM 184 (479)
Q Consensus 105 ~~d~~~FP~~~~~~Gmk~la~~ih~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~ 184 (479)
+.|+++||+ .+.|+++||++|+|+-+++.|++.. .+..+.+ .+ ..++.. +...
T Consensus 67 t~d~~~FPd------p~~mi~~Lh~~G~k~v~~v~P~~~~---~~~~~~y--------~~-----~~~~~~-----~~~~ 119 (292)
T cd06595 67 SWNRKLFPD------PEKLLQDLHDRGLKVTLNLHPADGI---RAHEDQY--------PE-----MAKALG-----VDPA 119 (292)
T ss_pred EEChhcCCC------HHHHHHHHHHCCCEEEEEeCCCccc---CCCcHHH--------HH-----HHHhcC-----CCcc
Confidence 999999996 9999999999999999999997521 1111111 10 111111 1001
Q ss_pred CCCceeecCCchhHHHH-HHHHHHHHhhcCccEEEecCCCC-----CCCCHHHH-HHH-HHHHHhhcCCceEEecCCCCC
Q 011701 185 PHGFMAVNTKLGAGRAF-LRSLHKQYADWSVDFVKHDCAFG-----DDLDEGEI-SVV-SEVFKGEHNRPIIYSLSPGTS 256 (479)
Q Consensus 185 ~~~~~~lD~t~p~~~~~-~~~~~~~~a~wGvdylK~D~~~~-----~~~~~~~y-~~~-~~al~~~~gr~i~l~~~~~~~ 256 (479)
.+....+|.++|++.++ .+.+.+.+.+.|||.++.|+.-+ ..+.+..+ ..+ .....+...||++++=|....
T Consensus 120 ~~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg~W~D~~E~~~~~~~~~~~~~~~~~~~y~~~~~~~~r~f~lsRs~~~G 199 (292)
T cd06595 120 TEGPILFDLTNPKFMDAYFDNVHRPLEKQGVDFWWLDWQQGNRTRTPGLDPLWWLNHVHYLDSARNGRRPLIFSRWAGLG 199 (292)
T ss_pred cCCeEEecCCCHHHHHHHHHHHHHHHHhcCCcEEEecCCCCcccccCCcchHHHHHHHHHHHhhccCCCcEEEEeecccC
Confidence 12335789999998875 47777888999999999997532 11222111 111 111111346888886653111
Q ss_pred CCcchHHhhhccccEEEecCCCCCChhhHHHHHH
Q 011701 257 AAPDMAQKINGLANMYRVTGDDWDSWPDVAAHFS 290 (479)
Q Consensus 257 ~~p~~~~~~~~~a~~~Ris~D~~~~W~~~~~~~~ 290 (479)
..+|+-.| ++|+..+|+.+...+.
T Consensus 200 --------~qry~~~W--sGD~~s~W~~l~~~i~ 223 (292)
T cd06595 200 --------SHRYPIGF--SGDTIISWASLAFQPY 223 (292)
T ss_pred --------CCcCCCcc--CCCcccCHHHHHHHHH
Confidence 13566666 8999999998876543
No 24
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.14 E-value=2.3e-09 Score=108.94 Aligned_cols=199 Identities=15% Similarity=0.120 Sum_probs=124.9
Q ss_pred cCCHHHHHHHHHHHHh-ccccCCceEEEeccccccccccCccCCCCcccccCCCCCceeCCCCCCCCCCCCChHHHHHHH
Q 011701 49 IISEQDFLQSADIVAK-RLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMVPDPDRWPSSKGGKGFTEVAKKV 127 (479)
Q Consensus 49 ~i~e~~i~~~ad~l~~-gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~~FP~~~~~~Gmk~la~~i 127 (479)
..++++|++.++.+.+ ++. ++.|.||++|+... + .....+..|+++||+ .+.|+++|
T Consensus 25 ~~~q~~v~~~~~~~r~~~iP---~d~i~ld~~~~~~~--~-----------~~~~~f~~d~~~FPd------p~~mi~~L 82 (317)
T cd06599 25 PDAQEALLEFIDKCREHDIP---CDSFHLSSGYTSIE--G-----------GKRYVFNWNKDRFPD------PAAFVAKF 82 (317)
T ss_pred ccHHHHHHHHHHHHHHcCCC---eeEEEEeccccccC--C-----------CceeeeecCcccCCC------HHHHHHHH
Confidence 3569999999997744 443 68999999998641 0 123568889999996 99999999
Q ss_pred HHcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhhccc-CCCCCCCCCCceeecCCchhHHHHHHHHH
Q 011701 128 HDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIK-EKPCAWMPHGFMAVNTKLGAGRAFLRSLH 206 (479)
Q Consensus 128 h~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~-~~~c~~~~~~~~~lD~t~p~~~~~~~~~~ 206 (479)
|++|+|+-+|+.|++.. .++.+.+.... ++..++.... ...-.+.++.-..+|.|+|++++|+.+..
T Consensus 83 ~~~g~k~~~~i~P~i~~-----~~~~y~e~~~~-------g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 150 (317)
T cd06599 83 HERGIRLAPNIKPGLLQ-----DHPRYKELKEA-------GAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGV 150 (317)
T ss_pred HHCCCEEEEEeCCcccC-----CCHHHHHHHHC-------CcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHH
Confidence 99999999999998752 23333221111 1222221100 00011223333579999999999997766
Q ss_pred -HHHhhcCccEEEecCCCCC-----------C--CCHH----HH-----HHHHHHHHhh--cCCceEEecCCCCCCCcch
Q 011701 207 -KQYADWSVDFVKHDCAFGD-----------D--LDEG----EI-----SVVSEVFKGE--HNRPIIYSLSPGTSAAPDM 261 (479)
Q Consensus 207 -~~~a~wGvdylK~D~~~~~-----------~--~~~~----~y-----~~~~~al~~~--~gr~i~l~~~~~~~~~p~~ 261 (479)
+.+.+.|||++|+|++-.. . .+.. .| ++..+++++. -.||++++=+-...
T Consensus 151 ~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~~g~~~~~~~~~n~y~~l~~~a~~~~~~~~~~~~r~f~ltRs~~~G----- 225 (317)
T cd06599 151 KEALLDLGIDSTWNDNNEYEIWDDDAVCDGFGKPGTIGELRPVQPNLMARASHEAQAEHYPNRRPYIVSRSGFAG----- 225 (317)
T ss_pred HHHHhcCCCcEEEecCCCCccCCCcceecCCCCccchhhcccchHHHHHHHHHHHHHHhCCCCCcEEEEcCCccc-----
Confidence 6788999999999987321 0 1111 12 2344555522 23677775542110
Q ss_pred HHhhhccccEEEecCCCCCChhhHHHHHHH
Q 011701 262 AQKINGLANMYRVTGDDWDSWPDVAAHFSV 291 (479)
Q Consensus 262 ~~~~~~~a~~~Ris~D~~~~W~~~~~~~~~ 291 (479)
...++ .--++|+..+|+.+..++..
T Consensus 226 ---~qry~--~~WsGD~~s~W~~L~~~i~~ 250 (317)
T cd06599 226 ---IQRYA--QTWSGDNRTSWKTLRYNIAM 250 (317)
T ss_pred ---ccCCc--CeeCCCcccCHHHHHHHHHH
Confidence 02332 23578999999988776554
No 25
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=99.14 E-value=1.4e-09 Score=110.73 Aligned_cols=198 Identities=18% Similarity=0.233 Sum_probs=124.1
Q ss_pred CCHHHHHHHHHHHHhccccCCceEEEeccccccccccCccCCCCcccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHH
Q 011701 50 ISEQDFLQSADIVAKRLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMVPDPDRWPSSKGGKGFTEVAKKVHD 129 (479)
Q Consensus 50 i~e~~i~~~ad~l~~gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~~FP~~~~~~Gmk~la~~ih~ 129 (479)
-|+++|++.++.+.+. ....+.|.||..|+... .++.++.|+++||+ ++.++++||+
T Consensus 21 ~~~~ev~~~~~~~~~~--~iP~d~i~lD~~~~~~~---------------~~~~f~~d~~~FPd------p~~mi~~L~~ 77 (319)
T cd06591 21 KTQEELLDVAKEYRKR--GIPLDVIVQDWFYWPKQ---------------GWGEWKFDPERFPD------PKAMVRELHE 77 (319)
T ss_pred CCHHHHHHHHHHHHHh--CCCccEEEEechhhcCC---------------CceeEEEChhhCCC------HHHHHHHHHH
Confidence 4899999999987542 23368999998887531 14599999999996 9999999999
Q ss_pred cCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhhcccCCCCCCCCCCceeecCCchhHHHHHH-HHHHH
Q 011701 130 MGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGRAFLR-SLHKQ 208 (479)
Q Consensus 130 ~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~-~~~~~ 208 (479)
+|+|+-+++.|++.. +++.+.+.... ++..++....... .+.++....+|.|||++++|+. .+.+.
T Consensus 78 ~G~kv~~~i~P~v~~-----~~~~y~e~~~~-------g~~v~~~~g~~~~-~~w~g~~~~~Dftnp~a~~w~~~~~~~~ 144 (319)
T cd06591 78 MNAELMISIWPTFGP-----ETENYKEMDEK-------GYLIKTDRGPRVT-MQFGGNTRFYDATNPEAREYYWKQLKKN 144 (319)
T ss_pred CCCEEEEEecCCcCC-----CChhHHHHHHC-------CEEEEcCCCCeee-eeCCCCccccCCCCHHHHHHHHHHHHHH
Confidence 999999999999752 33433221111 1222221100001 1234444679999999999874 45556
Q ss_pred HhhcCccEEEecCCCCCC-----------C---C-H---HHH-----HHHHHHHHhh--cCCceEEecCCCCCCCcchHH
Q 011701 209 YADWSVDFVKHDCAFGDD-----------L---D-E---GEI-----SVVSEVFKGE--HNRPIIYSLSPGTSAAPDMAQ 263 (479)
Q Consensus 209 ~a~wGvdylK~D~~~~~~-----------~---~-~---~~y-----~~~~~al~~~--~gr~i~l~~~~~~~~~p~~~~ 263 (479)
+.+.|||++|+|+.-... . + . ..| ++..+++++. ..||++++=+....
T Consensus 145 ~~~~Gvdg~w~D~~Ep~~~~~~~~~~~~~~~~~~~~~~hN~y~~~~~~~~~e~~~~~~~~~r~f~~sRs~~~G------- 217 (319)
T cd06591 145 YYDKGVDAWWLDAAEPEYSVYDFGLDNYRYHLGPGLEVGNAYPLMHAKGIYEGQRAAGDEKRVVILTRSAWAG------- 217 (319)
T ss_pred hhcCCCcEEEecCCCCCccCCcccccCcccCCCCchhhhhhhHHHHHHHHHHHHHHhCCCCCceEEEeccccc-------
Confidence 889999999999863210 0 0 0 122 2334455522 24788876542100
Q ss_pred hhhccccEEEecCCCCCChhhHHHHHHHH
Q 011701 264 KINGLANMYRVTGDDWDSWPDVAAHFSVA 292 (479)
Q Consensus 264 ~~~~~a~~~Ris~D~~~~W~~~~~~~~~~ 292 (479)
...|+.+. =++|...+|+.+...+...
T Consensus 218 -sqry~~~~-W~GD~~s~w~~L~~~i~~~ 244 (319)
T cd06591 218 -SQRYGALV-WSGDIDSSWETLRRQIAAG 244 (319)
T ss_pred -cccccCce-eCCCccccHHHHHHHHHHH
Confidence 01333221 2488899999887765543
No 26
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.12 E-value=4.8e-09 Score=107.59 Aligned_cols=231 Identities=11% Similarity=0.121 Sum_probs=129.4
Q ss_pred CCCCCceEec--cccccCccCCHHHHHHHHHHHHh-ccccCCceEEEeccccccccc---c--CccCCCCcccccC-CCC
Q 011701 32 HAILPPRGWN--SYDSFCWIISEQDFLQSADIVAK-RLLPHGYEYVVVDYLWYRKKV---K--DAHIDSEGIDLID-EWG 102 (479)
Q Consensus 32 ~~~~PpmGWn--SW~~~~~~i~e~~i~~~ad~l~~-gl~~~Gy~yi~iDdgW~~~~~---~--g~~~~~~~~~~~d-~~G 102 (479)
.++.||. |. -|.+-....|+++|++.++.+.+ ++. ++.|.||+ |+.... . -.|-++.+ ..+ .++
T Consensus 2 ~p~lpP~-walG~~~sr~~Y~~~~ev~~v~~~~~~~~iP---~d~i~lD~-W~~~~~~~~w~d~~y~~~~~--~~~~~~~ 74 (340)
T cd06597 2 KPELLPK-WAFGLWMSANEWDTQAEVMRQMDAHEEHGIP---VTVVVIEQ-WSDEATFYVFNDAQYTPKDG--GAPLSYD 74 (340)
T ss_pred CCCCCch-HHhhhhhhccCCCCHHHHHHHHHHHHHcCCC---eeEEEEec-ccCcceeeeeccchhccccc--CCcceec
Confidence 3456663 22 34333345789999999998754 443 68999995 886310 0 00000000 000 133
Q ss_pred CceeC-CCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCcccccccCCccccccCCCCCCccc-CccchhhhhcccCCC
Q 011701 103 RMVPD-PDRWPSSKGGKGFTEVAKKVHDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEA-GRQWRAQDIAIKEKP 180 (479)
Q Consensus 103 ~~~~d-~~~FP~~~~~~Gmk~la~~ih~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~-g~~~~~~di~~~~~~ 180 (479)
+...+ ..+||+ .+.|+++||++|+|+-+|+.|++..+........ ..|.+. -.++..++.......
T Consensus 75 ~~~f~~~~~FPd------p~~mi~~Lh~~G~kv~l~v~P~i~~~~~~~~~~~------~~~~~~~~~g~~vk~~~G~~~~ 142 (340)
T cd06597 75 DFSFPVEGRWPN------PKGMIDELHEQGVKVLLWQIPIIKLRPHPHGQAD------NDEDYAVAQNYLVQRGVGKPYR 142 (340)
T ss_pred ccccCccccCCC------HHHHHHHHHHCCCEEEEEecCccccccccccccc------hhHHHHHHCCEEEEcCCCCccc
Confidence 44444 368996 9999999999999999999998853211000000 001000 012222222111100
Q ss_pred C-CCCCCCceeecCCchhHHHHHHHHHHHHh-hcCccEEEecCCCC---C------CCCHH--------HH-HHHHHHHH
Q 011701 181 C-AWMPHGFMAVNTKLGAGRAFLRSLHKQYA-DWSVDFVKHDCAFG---D------DLDEG--------EI-SVVSEVFK 240 (479)
Q Consensus 181 c-~~~~~~~~~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~~~---~------~~~~~--------~y-~~~~~al~ 240 (479)
- .+.++.-..+|.|+|++++|..+..+.+. +.|||.+|+|+.-. . ..... .| +++.++++
T Consensus 143 ~~~~W~g~~~~~Dftnp~a~~Ww~~~~~~~~~~~Gidg~w~D~~E~~~~~~~~~~~g~~~~~~hN~y~~~~~~~~~e~~~ 222 (340)
T cd06597 143 IPGQWFPDSLMLDFTNPEAAQWWMEKRRYLVDELGIDGFKTDGGEHVWGRDLHFRDGRRGDEMRNTYPNHYVRAYNDFLR 222 (340)
T ss_pred cccccCCCceeecCCCHHHHHHHHHHHHHHHHhcCCcEEEecCCCccCCCCceecCCCcHHHhhcccHHHHHHHHHHHHH
Confidence 0 12344456899999999999988877765 79999999996421 1 00111 12 34555565
Q ss_pred hhcCCceEEecCCCCCCCcchHHhhhccccEEEecCCCCCChhhHHHHHHH
Q 011701 241 GEHNRPIIYSLSPGTSAAPDMAQKINGLANMYRVTGDDWDSWPDVAAHFSV 291 (479)
Q Consensus 241 ~~~gr~i~l~~~~~~~~~p~~~~~~~~~a~~~Ris~D~~~~W~~~~~~~~~ 291 (479)
+.-.||++++=|.... .+.++-.| ++|...+|+.+...+..
T Consensus 223 ~~~~r~filtRs~~~G--------sqry~~~W--sGD~~s~W~~L~~~i~~ 263 (340)
T cd06597 223 RAKKDGVTFSRAGYTG--------AQAHGIFW--AGDENSTFGAFRWSVFA 263 (340)
T ss_pred hccCCcEEEEecccCc--------cCCCccee--cCCCCCCHHHHHHHHHH
Confidence 2333777776552110 02344344 88999999988776554
No 27
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=99.07 E-value=8.5e-09 Score=105.82 Aligned_cols=196 Identities=13% Similarity=0.131 Sum_probs=125.1
Q ss_pred cCCHHHHHHHHHHHHh-ccccCCceEEEeccccccccccCccCCCCcccccCCCCCceeCCCCCCCCCCCCChHHHHHHH
Q 011701 49 IISEQDFLQSADIVAK-RLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMVPDPDRWPSSKGGKGFTEVAKKV 127 (479)
Q Consensus 49 ~i~e~~i~~~ad~l~~-gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~~FP~~~~~~Gmk~la~~i 127 (479)
.-|+++|++.++.+.+ ++. .+.|.||..|+.. .+.++.|+++||+ .+.++++|
T Consensus 20 y~~~~ev~~~~~~~~~~~iP---~d~i~lD~~~~~~-----------------~~~f~~d~~~FPd------p~~mi~~L 73 (339)
T cd06603 20 YKDQEDVKEVDAGFDEHDIP---YDVIWLDIEHTDG-----------------KRYFTWDKKKFPD------PEKMQEKL 73 (339)
T ss_pred CCCHHHHHHHHHHHHHcCCC---ceEEEEChHHhCC-----------------CCceEeCcccCCC------HHHHHHHH
Confidence 3589999999998754 443 6899999999742 4678999999996 99999999
Q ss_pred HHcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhhcccC-CCCCCCCCCceeecCCchhHHHHHHHHH
Q 011701 128 HDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIKE-KPCAWMPHGFMAVNTKLGAGRAFLRSLH 206 (479)
Q Consensus 128 h~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~-~~c~~~~~~~~~lD~t~p~~~~~~~~~~ 206 (479)
|++|+|+-+|+.|++.. .++++++.+.... ++..++..... ..+.| ++.-..+|.++|++++|+.+..
T Consensus 74 ~~~G~k~~~~~~P~v~~---~~~~~~y~e~~~~-------g~~vk~~~g~~~~~~~w-~g~~~~~Dftnp~a~~ww~~~~ 142 (339)
T cd06603 74 ASKGRKLVTIVDPHIKR---DDGYYVYKEAKDK-------GYLVKNSDGGDFEGWCW-PGSSSWPDFLNPEVRDWWASLF 142 (339)
T ss_pred HHCCCEEEEEecCceec---CCCCHHHHHHHHC-------CeEEECCCCCEEEEEEC-CCCcCCccCCChhHHHHHHHHH
Confidence 99999999999998853 1223443321111 12222211100 11222 3434579999999999998877
Q ss_pred HHHh---hcCccEEEecCCCCC-------C----------CCHH----HH-----HHHHHHHHhhc---CCceEEecCCC
Q 011701 207 KQYA---DWSVDFVKHDCAFGD-------D----------LDEG----EI-----SVVSEVFKGEH---NRPIIYSLSPG 254 (479)
Q Consensus 207 ~~~a---~wGvdylK~D~~~~~-------~----------~~~~----~y-----~~~~~al~~~~---gr~i~l~~~~~ 254 (479)
+.+. +-|++++++|..-.. . .+.. .| ++..+++++.. .||++++=|..
T Consensus 143 ~~~~~~~~~g~~g~w~D~~Ep~~f~~~~~~~p~d~~~~~~~~~~~~hN~y~~~~~~a~~e~~~~~~~~~~r~~~~sRs~~ 222 (339)
T cd06603 143 SYDKYKGSTENLYIWNDMNEPSVFNGPELTMPKDAIHYGGIEHREVHNIYGLYMHMATFDGLLKRSEGNKRPFVLTRSFF 222 (339)
T ss_pred HHHhhcccCCCceEEeccCCccccCCCCCcCCCcceecCCCcHHHHhhHhHHHHHHHHHHHHHHhhccCCceEEEEeccc
Confidence 7654 479999999965311 0 1111 12 23445555333 47777765531
Q ss_pred CCCCcchHHhhhccccEEEecCCCCCChhhHHHHHHH
Q 011701 255 TSAAPDMAQKINGLANMYRVTGDDWDSWPDVAAHFSV 291 (479)
Q Consensus 255 ~~~~p~~~~~~~~~a~~~Ris~D~~~~W~~~~~~~~~ 291 (479)
.. ...++- =-++|+..+|+.+..++..
T Consensus 223 ~G--------~qry~~--~W~GD~~s~W~~L~~~i~~ 249 (339)
T cd06603 223 AG--------SQRYAA--IWTGDNTATWEHLKISIPM 249 (339)
T ss_pred cc--------ccceee--eeCCCccCCHHHHHHHHHH
Confidence 11 023432 2567999999988776554
No 28
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=99.01 E-value=4.9e-09 Score=117.19 Aligned_cols=211 Identities=22% Similarity=0.344 Sum_probs=138.6
Q ss_pred CCCCCCc---eEeccccccCccCCHHHHHHHHHHHHhccccCCceEEEeccc-cccccccCccCCCCcccccCCCCCcee
Q 011701 31 EHAILPP---RGWNSYDSFCWIISEQDFLQSADIVAKRLLPHGYEYVVVDYL-WYRKKVKDAHIDSEGIDLIDEWGRMVP 106 (479)
Q Consensus 31 ~~~~~Pp---mGWnSW~~~~~~i~e~~i~~~ad~l~~gl~~~Gy~yi~iDdg-W~~~~~~g~~~~~~~~~~~d~~G~~~~ 106 (479)
|-++.|| +| +.|-+....-+|+.+++.++.+.+. +.-++.|.+|.. |.. .++.++.
T Consensus 256 Gkp~l~P~Wa~G-~~~~~~~~~~~e~~v~~~i~~~~~~--~IP~d~~~lD~~~~~~-----------------~~~~F~w 315 (772)
T COG1501 256 GKPPLPPKWALG-WLWTSRYTYYDEDEVLEFIDEMRER--DIPLDVFVLDIDFWMD-----------------NWGDFTW 315 (772)
T ss_pred CCCCCCCceecC-CCceeccccccHHHHHHHHhhcccc--cCcceEEEEeehhhhc-----------------cccceEE
Confidence 4555666 78 3343444457799999999988653 334689999985 753 4788999
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhhc-ccCCCCCCCC
Q 011701 107 DPDRWPSSKGGKGFTEVAKKVHDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIA-IKEKPCAWMP 185 (479)
Q Consensus 107 d~~~FP~~~~~~Gmk~la~~ih~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~-~~~~~c~~~~ 185 (479)
|+.+||+ .+.|++++|++|+|+-+|+.|.+.. +++++..... .+|.+++.. .....+-| |
T Consensus 316 d~~~FP~------pk~mi~~l~~~Gikl~~~i~P~i~~-----d~~~~~e~~~-------~Gy~~k~~~g~~~~~~~w-~ 376 (772)
T COG1501 316 DPDRFPD------PKQMIAELHEKGIKLIVIINPYIKQ-----DSPLFKEAIE-------KGYFVKDPDGEIYQADFW-P 376 (772)
T ss_pred CcccCCC------HHHHHHHHHhcCceEEEEecccccc-----CCchHHHHHH-------CCeEEECCCCCEeeeccc-C
Confidence 9999996 9999999999999999999998753 3344432221 223333322 11112223 3
Q ss_pred CCceeecCCchhHHHHHH-HHHHHHhhcCccEEEecCCCCC---------CCCHHH----H-----HHHHHHHHhh--cC
Q 011701 186 HGFMAVNTKLGAGRAFLR-SLHKQYADWSVDFVKHDCAFGD---------DLDEGE----I-----SVVSEVFKGE--HN 244 (479)
Q Consensus 186 ~~~~~lD~t~p~~~~~~~-~~~~~~a~wGvdylK~D~~~~~---------~~~~~~----y-----~~~~~al~~~--~g 244 (479)
+.-..+|+++|++++|.. ...+.+.+.|||.++.|++-.. ..+.++ | .+..+++++. ..
T Consensus 377 ~~~a~~DFtnp~~r~Ww~~~~~~~l~d~Gv~g~W~D~nEp~~~~~~~~~~g~~~~~~~N~yp~~~~~a~~~~~~~~~~~~ 456 (772)
T COG1501 377 GNSAFPDFTNPDAREWWASDKKKNLLDLGVDGFWNDMNEPEPFDGDGFGNGIDHEEMHNLYPLLYAKAVYEALKELGGNE 456 (772)
T ss_pred CcccccCCCCHHHHHHHHHHHHhHHHhcCccEEEccCCCCccccccccccccCHHHHhcchhHHHHHHHHHHHHhhcCCC
Confidence 334679999999999998 4557799999999999986421 112111 2 3456667622 35
Q ss_pred CceEEecCCCCCCCcchHHhhhccccEEEecCCCCCChhhHHHHHH
Q 011701 245 RPIIYSLSPGTSAAPDMAQKINGLANMYRVTGDDWDSWPDVAAHFS 290 (479)
Q Consensus 245 r~i~l~~~~~~~~~p~~~~~~~~~a~~~Ris~D~~~~W~~~~~~~~ 290 (479)
||++|+=|..... +.++-.| ++|+..+|+++...+-
T Consensus 457 r~~~lsRsg~aG~--------Q~~~~~W--sGD~~s~wd~l~~si~ 492 (772)
T COG1501 457 RPFILSRSGYAGS--------QRYAAHW--SGDNRSSWDSLRESIP 492 (772)
T ss_pred ceEEEEecccccc--------eecccee--CCccccchHHHHhhHH
Confidence 8888876631110 1123333 7899999998876644
No 29
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=98.97 E-value=4.5e-09 Score=106.81 Aligned_cols=201 Identities=13% Similarity=0.181 Sum_probs=118.2
Q ss_pred CHHHHHHHHHHHHh-ccccCCceEEEeccccccccccCccCCCCcccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHH
Q 011701 51 SEQDFLQSADIVAK-RLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMVPDPDRWPSSKGGKGFTEVAKKVHD 129 (479)
Q Consensus 51 ~e~~i~~~ad~l~~-gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~~FP~~~~~~Gmk~la~~ih~ 129 (479)
++++|++.++.+.+ ++. .+.|.|| .|+...... .| .-.+..++.|+++||+ .+.|+++||+
T Consensus 21 s~~~v~~~~~~~~~~~iP---~d~i~ld-dw~~~~~~~-----~g---~~~~~~f~~d~~~FPd------p~~mi~~Lh~ 82 (317)
T cd06594 21 GTDKVLEALEKARAAGVK---VAGLWLQ-DWTGRRETS-----FG---DRLWWNWEWDPERYPG------LDELIEELKA 82 (317)
T ss_pred CHHHHHHHHHHHHHcCCC---eeEEEEc-cccCccccc-----cc---ceeeeeeEEChhhCCC------HHHHHHHHHH
Confidence 99999999998754 443 6889999 586421000 00 0012247999999996 9999999999
Q ss_pred cCCeEEEEeecCcccccccCCccc-cccCCCCCCcccCccchhhhhcccCCCCCCCCCCceeecCCchhHHHHHHHHHHH
Q 011701 130 MGLKFGIHVMKGISNQAVNANTLI-YDYDKKGPYTEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGRAFLRSLHKQ 208 (479)
Q Consensus 130 ~Glk~Giy~~pg~~~~~~~~~s~i-~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~~~ 208 (479)
+|+|+-+|+.|++... ++- +.+... .++..++.......-.+.++.-..+|.++|++++|+.+.++.
T Consensus 83 ~G~~~~~~i~P~v~~~-----~~~~y~~~~~-------~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~ 150 (317)
T cd06594 83 RGIRVLTYINPYLADD-----GPLYYEEAKD-------AGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKE 150 (317)
T ss_pred CCCEEEEEecCceecC-----CchhHHHHHH-------CCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHH
Confidence 9999999999987531 111 111000 112222211100001122333367999999999999766665
Q ss_pred H-hhcCccEEEecCCCCC--------CCCHH----HHH-----HHHHHHHhh--cCCceEEecCCCCCCCcchHHhhhcc
Q 011701 209 Y-ADWSVDFVKHDCAFGD--------DLDEG----EIS-----VVSEVFKGE--HNRPIIYSLSPGTSAAPDMAQKINGL 268 (479)
Q Consensus 209 ~-a~wGvdylK~D~~~~~--------~~~~~----~y~-----~~~~al~~~--~gr~i~l~~~~~~~~~p~~~~~~~~~ 268 (479)
+ .+.|||.+|+|+.-.. ..+.. .|. +..+++++. .+||++++=|.... .+++
T Consensus 151 ~~~~~Gvdg~w~D~~E~~p~d~~~~~g~~~~~~hN~y~~~~~~~~~~~~~~~~~~~r~fvltRs~~~G--------sqry 222 (317)
T cd06594 151 MLLDLGLSGWMADFGEYLPFDAVLHSGEDAATMHNRYPELWAKLNREAVEEAGKTGDILFFMRSGFTG--------SQKY 222 (317)
T ss_pred HhhhcCCcEEEecCCCCCCCcceecCCCCHHHHhhHHHHHHHHHHHHHHHHhccCCCeEEEEcccccc--------cccc
Confidence 5 8999999999975321 11111 232 234444422 35778776553110 1245
Q ss_pred ccEEEecCCCCCChhh---HHHHHH
Q 011701 269 ANMYRVTGDDWDSWPD---VAAHFS 290 (479)
Q Consensus 269 a~~~Ris~D~~~~W~~---~~~~~~ 290 (479)
+.+.+ ++|...+|+. +...+.
T Consensus 223 ~~~~W-sGD~~s~W~~~~~L~~~i~ 246 (317)
T cd06594 223 STLFW-AGDQMVSWDAHDGLKSVVP 246 (317)
T ss_pred ccccc-CCCCCCCCcCcccHHHHHH
Confidence 54322 6888889983 555443
No 30
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=98.95 E-value=3.4e-08 Score=97.98 Aligned_cols=167 Identities=19% Similarity=0.256 Sum_probs=112.8
Q ss_pred CCCCCceEe--ccccccCccCCHHHHHHHHHHHHh-ccccCCceEEEeccccccccccCccCCCCcccccCCCCCc--ee
Q 011701 32 HAILPPRGW--NSYDSFCWIISEQDFLQSADIVAK-RLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRM--VP 106 (479)
Q Consensus 32 ~~~~PpmGW--nSW~~~~~~i~e~~i~~~ad~l~~-gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~--~~ 106 (479)
.++.||. | -.|.+.....|+++|++.++.+.+ ++. ++.|.||++|+.. ++.+ +.
T Consensus 2 ~p~~~P~-wa~G~~~~~~~~~~~~~v~~~~~~~~~~~iP---~d~~~lD~~~~~~-----------------~~~f~~~~ 60 (265)
T cd06589 2 KPALPPK-WAFGYWLSRYGYGDQDKVLEVIDGMRENDIP---LDGFVLDDDYTDG-----------------YGDFTFDW 60 (265)
T ss_pred CCCCCcH-HHHHHHHhcCCCCCHHHHHHHHHHHHHcCCC---ccEEEECcccccC-----------------Cceeeeec
Confidence 3456675 3 255555556899999999987743 443 6899999999864 3555 99
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhhcccCCCCCCCCC
Q 011701 107 DPDRWPSSKGGKGFTEVAKKVHDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIKEKPCAWMPH 186 (479)
Q Consensus 107 d~~~FP~~~~~~Gmk~la~~ih~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~ 186 (479)
|+++||+ ++.++++||++|+|+.+|+.|++
T Consensus 61 d~~~Fpd------p~~~i~~l~~~g~~~~~~~~P~v-------------------------------------------- 90 (265)
T cd06589 61 DAGKFPN------PKSMIDELHDNGVKLVLWIDPYI-------------------------------------------- 90 (265)
T ss_pred ChhhCCC------HHHHHHHHHHCCCEEEEEeChhH--------------------------------------------
Confidence 9999996 99999999999999999987643
Q ss_pred CceeecCCchhHHHHHHHHHHH-HhhcCccEEEecCCCCCCC-------------CHH----HH-----HHHHHHHHhh-
Q 011701 187 GFMAVNTKLGAGRAFLRSLHKQ-YADWSVDFVKHDCAFGDDL-------------DEG----EI-----SVVSEVFKGE- 242 (479)
Q Consensus 187 ~~~~lD~t~p~~~~~~~~~~~~-~a~wGvdylK~D~~~~~~~-------------~~~----~y-----~~~~~al~~~- 242 (479)
++|+.+.++. +.+.|||++|+|..-.... +.. .| +++.+++++.
T Consensus 91 ------------~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~ 158 (265)
T cd06589 91 ------------REWWAEVVKKLLVSLGVDGFWTDMGEPSPGDGNIFTGGVVGRVKHEEMHNAYPLLYAEATYEALRKNS 158 (265)
T ss_pred ------------HHHHHHHHHHhhccCCCCEEeccCCCCCcCCCccccCCcCCCccHHHHcchhHHHHHHHHHHHHHHhc
Confidence 3444444444 4899999999997642111 111 12 2445566533
Q ss_pred -cCCceEEecCCCCCCCcchHHhhhccccEEEecCCCCCChhhHHHHHHH
Q 011701 243 -HNRPIIYSLSPGTSAAPDMAQKINGLANMYRVTGDDWDSWPDVAAHFSV 291 (479)
Q Consensus 243 -~gr~i~l~~~~~~~~~p~~~~~~~~~a~~~Ris~D~~~~W~~~~~~~~~ 291 (479)
..||++++-|.... ...+ ..--++|...+|+.+..++..
T Consensus 159 ~~~r~~~~sRs~~~G--------sqry--~~~W~GD~~stW~~l~~~i~~ 198 (265)
T cd06589 159 KNKRPFILSRSGYAG--------SQRY--AGMWSGDNTSTWGYLRSQIPA 198 (265)
T ss_pred CCCCeEEEEcCCccc--------ccCc--CceeCCcccCCHHHHHHHHHH
Confidence 34778877653111 0233 233577888999998776554
No 31
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=98.93 E-value=9.8e-08 Score=108.15 Aligned_cols=154 Identities=18% Similarity=0.213 Sum_probs=102.5
Q ss_pred CCCCCCce---EeccccccCccCCHHHHHHHHHHHHh-ccccCCceEEEeccccccccccCccCCCCcccccCCCCCcee
Q 011701 31 EHAILPPR---GWNSYDSFCWIISEQDFLQSADIVAK-RLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMVP 106 (479)
Q Consensus 31 ~~~~~Ppm---GWnSW~~~~~~i~e~~i~~~ad~l~~-gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~ 106 (479)
|.++.||. |+ |.+-...-|++++++.++.+.+ ++. .+.|.+|..|+. .++.++.
T Consensus 178 Grp~mpP~WALGy--~qSR~~Y~sq~eV~eva~~fre~~IP---~DvIwlDidYm~-----------------g~~~FTw 235 (978)
T PLN02763 178 GTVFMPPKWALGY--QQCRWSYESAKRVAEIARTFREKKIP---CDVVWMDIDYMD-----------------GFRCFTF 235 (978)
T ss_pred CCCCCCchHHhhe--eeccCCCCCHHHHHHHHHHHHHcCCC---ceEEEEehhhhc-----------------CCCceeE
Confidence 66777873 43 1111112578999999998754 333 689999998964 2567999
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhhcccCCCCCCCCC
Q 011701 107 DPDRWPSSKGGKGFTEVAKKVHDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIKEKPCAWMPH 186 (479)
Q Consensus 107 d~~~FP~~~~~~Gmk~la~~ih~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~ 186 (479)
|+++||+ .+.|+++||++|+|.-.++.|++... ++-+++.+.... ++..++.......-.+.|+
T Consensus 236 D~~rFPd------P~~mv~~Lh~~G~kvv~iidPgI~~d---~gY~~y~eg~~~-------~~fvk~~~G~~y~G~vWpG 299 (978)
T PLN02763 236 DKERFPD------PKGLADDLHSIGFKAIWMLDPGIKAE---EGYFVYDSGCEN-------DVWIQTADGKPFVGEVWPG 299 (978)
T ss_pred CcccCCC------HHHHHHHHHHCCCEEEEEEcCCCccC---CCCHHHHhHhhc-------CeeEECCCCCeeEeeecCC
Confidence 9999996 99999999999999977788987532 222222211100 0111110000000012244
Q ss_pred CceeecCCchhHHHHHHHHHHHHhhcCccEEEecCC
Q 011701 187 GFMAVNTKLGAGRAFLRSLHKQYADWSVDFVKHDCA 222 (479)
Q Consensus 187 ~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~ 222 (479)
....+|.++|++++|..+..+.|.+.|||+++.|.+
T Consensus 300 ~~~fpDFTnP~ar~WW~~~~k~l~d~GVDG~W~Dmn 335 (978)
T PLN02763 300 PCVFPDFTNKKTRSWWANLVKDFVSNGVDGIWNDMN 335 (978)
T ss_pred CccccCCCCHHHHHHHHHHHHHHhcCCCcEEEccCC
Confidence 445689999999999999999999999999999975
No 32
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=98.92 E-value=7.2e-08 Score=98.46 Aligned_cols=111 Identities=16% Similarity=0.179 Sum_probs=90.0
Q ss_pred CCHHHHHHHHHHHHh-ccccCCceEEEeccccccccccCccCCCCcccccCCCCCceeCCCCCCCCCCCCChHHHHHHHH
Q 011701 50 ISEQDFLQSADIVAK-RLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMVPDPDRWPSSKGGKGFTEVAKKVH 128 (479)
Q Consensus 50 i~e~~i~~~ad~l~~-gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~~FP~~~~~~Gmk~la~~ih 128 (479)
-|+++|++.++.+.+ ++. ++.|.||..|+. .++.++.|+++||+ .++++++||
T Consensus 21 ~~~~ev~~v~~~~r~~~IP---~D~i~lDidy~~-----------------~~~~Ft~d~~~FPd------p~~mv~~L~ 74 (332)
T cd06601 21 SNRSDLEEVVEGYRDNNIP---LDGLHVDVDFQD-----------------NYRTFTTNGGGFPN------PKEMFDNLH 74 (332)
T ss_pred CCHHHHHHHHHHHHHcCCC---CceEEEcCchhc-----------------CCCceeecCCCCCC------HHHHHHHHH
Confidence 489999999998754 443 689999999984 36889999999996 999999999
Q ss_pred HcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhhcccCCCCCCCCCCceeecCCchhHHHHHHHHHHH
Q 011701 129 DMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGRAFLRSLHKQ 208 (479)
Q Consensus 129 ~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~~~ 208 (479)
++|+|..+++.|++.. |..+ ++.-..+|.+||++++|.....+.
T Consensus 75 ~~G~klv~~i~P~i~~---------------------g~~~---------------~~~~~~pDftnp~ar~wW~~~~~~ 118 (332)
T cd06601 75 NKGLKCSTNITPVISY---------------------GGGL---------------GSPGLYPDLGRPDVREWWGNQYKY 118 (332)
T ss_pred HCCCeEEEEecCceec---------------------CccC---------------CCCceeeCCCCHHHHHHHHHHHHH
Confidence 9999999999998740 1000 011135799999999999888888
Q ss_pred HhhcCccEEEecCC
Q 011701 209 YADWSVDFVKHDCA 222 (479)
Q Consensus 209 ~a~wGvdylK~D~~ 222 (479)
+.+-|||++++|..
T Consensus 119 l~~~Gv~~~W~Dmn 132 (332)
T cd06601 119 LFDIGLEFVWQDMT 132 (332)
T ss_pred HHhCCCceeecCCC
Confidence 88999999999964
No 33
>PRK10426 alpha-glucosidase; Provisional
Probab=98.79 E-value=1.8e-07 Score=103.29 Aligned_cols=217 Identities=10% Similarity=0.087 Sum_probs=127.4
Q ss_pred CCCCCCceEecc---ccccCccCCHHHHHHHHHHHHh-ccccCCceEEEeccccccccccCccCCCCcccccCCCCCcee
Q 011701 31 EHAILPPRGWNS---YDSFCWIISEQDFLQSADIVAK-RLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMVP 106 (479)
Q Consensus 31 ~~~~~PpmGWnS---W~~~~~~i~e~~i~~~ad~l~~-gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~ 106 (479)
|.++.||. |.= |..+. -++++|++.++.+.+ ++. .+.|.|| .|+...... .+ ....++++.
T Consensus 199 Gr~p~~P~-Wal~G~~~g~~--~~~~~v~~v~~~~r~~~IP---~d~i~ld-dw~~~~~~~-------~g-~~~~~~~~~ 263 (635)
T PRK10426 199 GRQPELPD-WAYDGVTLGIQ--GGTEVVQKKLDTMRNAGVK---VNGIWAQ-DWSGIRMTS-------FG-KRLMWNWKW 263 (635)
T ss_pred CCCCCCCh-hhccCcccccc--CCHHHHHHHHHHHHHcCCC---eeEEEEe-ccccccccc-------cc-ccccccceE
Confidence 66667774 332 32232 357788888887643 333 5788898 598532100 00 012346789
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhhcccCCCCCCCCC
Q 011701 107 DPDRWPSSKGGKGFTEVAKKVHDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIKEKPCAWMPH 186 (479)
Q Consensus 107 d~~~FP~~~~~~Gmk~la~~ih~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~ 186 (479)
|+++||+ .+.++++||++|+|+-+|+.|++.. +++++.+.... ++..++.......-.+.++
T Consensus 264 d~~~FPd------p~~mi~~L~~~G~k~v~~i~P~v~~-----~~~~y~e~~~~-------gy~vk~~~g~~~~~~~~~~ 325 (635)
T PRK10426 264 DSERYPQ------LDSRIKQLNEEGIQFLGYINPYLAS-----DGDLCEEAAEK-------GYLAKDADGGDYLVEFGEF 325 (635)
T ss_pred ChhhCCC------HHHHHHHHHHCCCEEEEEEcCccCC-----CCHHHHHHHHC-------CcEEECCCCCEEEeEecCC
Confidence 9999996 9999999999999999999998752 34444321111 1222221100000011122
Q ss_pred CceeecCCchhHHHHHHHHH-HHHhhcCccEEEecCCCC--------CCCCHH----HH-----HHHHHHHHh--hcCCc
Q 011701 187 GFMAVNTKLGAGRAFLRSLH-KQYADWSVDFVKHDCAFG--------DDLDEG----EI-----SVVSEVFKG--EHNRP 246 (479)
Q Consensus 187 ~~~~lD~t~p~~~~~~~~~~-~~~a~wGvdylK~D~~~~--------~~~~~~----~y-----~~~~~al~~--~~gr~ 246 (479)
.-..+|.|+|++++|+.+.+ +.+.+.|||.+|.|+.-. ...+.. .| ++..+++++ ..+||
T Consensus 326 ~~~~~Dftnp~ar~Ww~~~~~~~~~~~Gvdg~w~D~~E~~p~d~~~~~g~~~~~~hN~Y~~l~~~~~~e~~~~~~~~~r~ 405 (635)
T PRK10426 326 YAGVVDLTNPEAYEWFKEVIKKNMIGLGCSGWMADFGEYLPTDAYLHNGVSAEIMHNAWPALWAKCNYEALEETGKLGEI 405 (635)
T ss_pred CceeecCCCHHHHHHHHHHHHHHHhhcCCCEEeeeCCCCCCCcceeeCCCCHHHhccHHHHHHHHHHHHHHHHhcCCCCc
Confidence 23479999999999997765 568899999999997431 112221 23 233455552 24588
Q ss_pred eEEecCCCCCCCcchHHhhhcccc-EEEecCCCCCChh---hHHHHHH
Q 011701 247 IIYSLSPGTSAAPDMAQKINGLAN-MYRVTGDDWDSWP---DVAAHFS 290 (479)
Q Consensus 247 i~l~~~~~~~~~p~~~~~~~~~a~-~~Ris~D~~~~W~---~~~~~~~ 290 (479)
++++=+.... ...++. .| ++|...+|+ .+...+.
T Consensus 406 f~ltRsg~aG--------sQry~~~~W--sGD~~ssW~~~d~L~~~I~ 443 (635)
T PRK10426 406 LFFMRAGYTG--------SQKYSTLFW--AGDQNVDWSLDDGLASVVP 443 (635)
T ss_pred EEEEccccCC--------cCCcccccc--CCCCCCcCcChhHHHHHHH
Confidence 8886552110 023443 34 689999996 4555443
No 34
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=98.22 E-value=1.2e-05 Score=79.61 Aligned_cols=129 Identities=22% Similarity=0.290 Sum_probs=77.3
Q ss_pred ccCCHHHHHHHHHHHHhccccCCceEEEeccccccccccCccCCCCcccccCCCCC-ceeCCCCCCCCCCCCChHHHHHH
Q 011701 48 WIISEQDFLQSADIVAKRLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGR-MVPDPDRWPSSKGGKGFTEVAKK 126 (479)
Q Consensus 48 ~~i~e~~i~~~ad~l~~gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~-~~~d~~~FP~~~~~~Gmk~la~~ 126 (479)
..+|.+..++.+|+-+ +.|++|+.||+||..... +...+ .++.+. . .|+.|++|
T Consensus 27 ~g~~t~~~k~yIDfAa----~~G~eYvlvD~GW~~~~~-------------~~~~d~~~~~~~--~------dl~elv~Y 81 (273)
T PF10566_consen 27 HGATTETQKRYIDFAA----EMGIEYVLVDAGWYGWEK-------------DDDFDFTKPIPD--F------DLPELVDY 81 (273)
T ss_dssp BSSSHHHHHHHHHHHH----HTT-SEEEEBTTCCGS---------------TTT--TT-B-TT----------HHHHHHH
T ss_pred CCCCHHHHHHHHHHHH----HcCCCEEEeccccccccc-------------cccccccccCCc--c------CHHHHHHH
Confidence 3689999999999874 478999999999985321 11122 222221 1 59999999
Q ss_pred HHHcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhhcccCCCCCCCCCCceeecCCchhHHHHHHHHH
Q 011701 127 VHDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGRAFLRSLH 206 (479)
Q Consensus 127 ih~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~ 206 (479)
.++||.++=||..--. + +. ..+. +..++..+
T Consensus 82 a~~KgVgi~lw~~~~~-----------------------~--~~-------------------~~~~-----~~~~~~~f 112 (273)
T PF10566_consen 82 AKEKGVGIWLWYHSET-----------------------G--GN-------------------VANL-----EKQLDEAF 112 (273)
T ss_dssp HHHTT-EEEEEEECCH-----------------------T--TB-------------------HHHH-----HCCHHHHH
T ss_pred HHHcCCCEEEEEeCCc-----------------------c--hh-------------------hHhH-----HHHHHHHH
Confidence 9999999888864210 0 00 0000 11146678
Q ss_pred HHHhhcCccEEEecCCCCCCCCHHHHHHHHHHHHhhcCCceEEecC
Q 011701 207 KQYADWSVDFVKHDCAFGDDLDEGEISVVSEVFKGEHNRPIIYSLS 252 (479)
Q Consensus 207 ~~~a~wGvdylK~D~~~~~~~~~~~y~~~~~al~~~~gr~i~l~~~ 252 (479)
+++++|||..||+||+..+. ++...-..+++++++.+.++++.-
T Consensus 113 ~~~~~~Gv~GvKidF~~~d~--Q~~v~~y~~i~~~AA~~~LmvnfH 156 (273)
T PF10566_consen 113 KLYAKWGVKGVKIDFMDRDD--QEMVNWYEDILEDAAEYKLMVNFH 156 (273)
T ss_dssp HHHHHCTEEEEEEE--SSTS--HHHHHHHHHHHHHHHHTT-EEEET
T ss_pred HHHHHcCCCEEeeCcCCCCC--HHHHHHHHHHHHHHHHcCcEEEec
Confidence 99999999999999986532 333444444444445577787764
No 35
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=97.87 E-value=9.8e-05 Score=81.67 Aligned_cols=146 Identities=17% Similarity=0.202 Sum_probs=103.2
Q ss_pred ceEeccccccC--ccCCHHHHHHHHHHHHhccccCCceEEEeccccccccccCccCCCCcccccCCCCCceeCCCCCCCC
Q 011701 37 PRGWNSYDSFC--WIISEQDFLQSADIVAKRLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMVPDPDRWPSS 114 (479)
Q Consensus 37 pmGWnSW~~~~--~~i~e~~i~~~ad~l~~gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~~FP~~ 114 (479)
|--|+-+..+. ...+.+.+++.++.+.+ ...+++.+.+|.-|+. .+++++.|+.+||.
T Consensus 293 ~pYWslGf~~~RwgY~nls~~~dvv~~~~~--agiPld~~~~DiDyMd-----------------~ykDFTvd~~~fp~- 352 (805)
T KOG1065|consen 293 PPYWSLGFQLCRWGYKNLSVVRDVVENYRA--AGIPLDVIVIDIDYMD-----------------GYKDFTVDKVWFPD- 352 (805)
T ss_pred CchhhccceecccccccHHHHHHHHHHHHH--cCCCcceeeeehhhhh-----------------cccceeeccccCcc-
Confidence 33499998765 46888999998886632 2235789999999974 57999999999994
Q ss_pred CCCCChHHHHHHHHHcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhhcccC---CC--C-CCCCCCc
Q 011701 115 KGGKGFTEVAKKVHDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIKE---KP--C-AWMPHGF 188 (479)
Q Consensus 115 ~~~~Gmk~la~~ih~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~---~~--c-~~~~~~~ 188 (479)
|+.+++.||+.|+|.=+...|++.+-. . ++ .|.+ ...+++.... .. - .-.|+..
T Consensus 353 -----~~~fv~~Lh~~G~kyvliidP~is~~~-----~-y~-----~y~~----g~~~~v~I~~~~g~~~~lg~vwP~~~ 412 (805)
T KOG1065|consen 353 -----LKDFVDDLHARGFKYVLIIDPFISTNS-----S-YG-----PYDR----GVAKDVLIKNREGSPKMLGEVWPGST 412 (805)
T ss_pred -----hHHHHHHHHhCCCeEEEEeCCccccCc-----c-ch-----hhhh----hhhhceeeecccCchhhhcccCCCcc
Confidence 999999999999999999999986421 1 10 0111 1111111110 00 0 0124556
Q ss_pred eeecCCchhHHHHHHHHHHHHh-hcCccEEEecCC
Q 011701 189 MAVNTKLGAGRAFLRSLHKQYA-DWSVDFVKHDCA 222 (479)
Q Consensus 189 ~~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~ 222 (479)
+..|.++|++..|...-++.|. .-+||.+++|..
T Consensus 413 ~fpDftnp~~~~Ww~~~~~~fh~~vp~dg~wiDmn 447 (805)
T KOG1065|consen 413 AFPDFTNPAVVEWWLDELKRFHDEVPFDGFWIDMN 447 (805)
T ss_pred cccccCCchHHHHHHHHHHhhcccCCccceEEECC
Confidence 7789999999998877677775 799999999963
No 36
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=97.36 E-value=0.14 Score=55.15 Aligned_cols=51 Identities=18% Similarity=0.060 Sum_probs=41.3
Q ss_pred ceeecCCchhHHHHHHHHHHHHhh-cCccEEEecCCCCCCCCHHHHHHHHHHHH
Q 011701 188 FMAVNTKLGAGRAFLRSLHKQYAD-WSVDFVKHDCAFGDDLDEGEISVVSEVFK 240 (479)
Q Consensus 188 ~~~lD~t~p~~~~~~~~~~~~~a~-wGvdylK~D~~~~~~~~~~~y~~~~~al~ 240 (479)
..-||..+|++++++...++.+.+ .|||.+.+|... .++.+-...+.++++
T Consensus 200 lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk--~v~~~f~~~~~~~~~ 251 (479)
T PRK09441 200 GADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVK--HIDAWFIKEWIEHVR 251 (479)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhc--CCCHHHHHHHHHHHH
Confidence 347899999999999988888876 999999999853 345555677888887
No 37
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=95.28 E-value=0.17 Score=51.49 Aligned_cols=84 Identities=17% Similarity=0.193 Sum_probs=56.1
Q ss_pred ChHHHHHHHHHcCCeEEEEeecCcccccccCCccccccCCCCCC-cccCccchhhhhcccCCCCCCCCCCceeecCCchh
Q 011701 119 GFTEVAKKVHDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPY-TEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGA 197 (479)
Q Consensus 119 Gmk~la~~ih~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~-~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~ 197 (479)
.++.|++.+|++|+.+=-++..|- +..+...++...+ .++|..|.. ..+..+|||.+++
T Consensus 62 D~~~l~~~l~e~gIY~IARIv~Fk-------D~~la~~~pe~av~~~~G~~w~d-------------~~~~~WvnP~~~e 121 (316)
T PF13200_consen 62 DLKALVKKLKEHGIYPIARIVVFK-------DPVLAEAHPEWAVKTKDGSVWRD-------------NEGEAWVNPYSKE 121 (316)
T ss_pred CHHHHHHHHHHCCCEEEEEEEEec-------ChHHhhhChhhEEECCCCCcccC-------------CCCCccCCCCCHH
Confidence 699999999999987655554332 2222222221111 111221211 1245689999999
Q ss_pred HHHHHHHHHHHHhhcCccEEEecCC
Q 011701 198 GRAFLRSLHKQYADWSVDFVKHDCA 222 (479)
Q Consensus 198 ~~~~~~~~~~~~a~wGvdylK~D~~ 222 (479)
+.+|.-.+++..++.|||=|-+|++
T Consensus 122 vw~Y~i~IA~Eaa~~GFdEIqfDYI 146 (316)
T PF13200_consen 122 VWDYNIDIAKEAAKLGFDEIQFDYI 146 (316)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeeee
Confidence 9999999999999999999999976
No 38
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=95.09 E-value=0.22 Score=50.68 Aligned_cols=88 Identities=16% Similarity=0.225 Sum_probs=55.8
Q ss_pred hHHHHHHHHHcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhhcccCCCCCC--CCCCceeecCCchh
Q 011701 120 FTEVAKKVHDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIKEKPCAW--MPHGFMAVNTKLGA 197 (479)
Q Consensus 120 mk~la~~ih~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~--~~~~~~~lD~t~p~ 197 (479)
|+.++++.|++||++=-|+..+.... ..+++..++ +.+...+ .++..+.. ..++.+.+||.||+
T Consensus 72 L~~~I~eaHkrGlevHAW~~~~~~~~---~~~~~~~~~---------p~~~~~~--~~~~~~~~~~~~~~~~~lnP~~Pe 137 (311)
T PF02638_consen 72 LEFMIEEAHKRGLEVHAWFRVGFNAP---DVSHILKKH---------PEWFAVN--HPGWVRTYEDANGGYYWLNPGHPE 137 (311)
T ss_pred HHHHHHHHHHcCCEEEEEEEeecCCC---chhhhhhcC---------chhheec--CCCceeecccCCCCceEECCCCHH
Confidence 89999999999999888874433221 112232221 2222111 01111111 12456789999999
Q ss_pred HHHHHHHHHHHH-hhcCccEEEecC
Q 011701 198 GRAFLRSLHKQY-ADWSVDFVKHDC 221 (479)
Q Consensus 198 ~~~~~~~~~~~~-a~wGvdylK~D~ 221 (479)
||+|+.+.++-+ ..+.||.|-+|.
T Consensus 138 Vr~~i~~~v~Eiv~~YdvDGIhlDd 162 (311)
T PF02638_consen 138 VRDYIIDIVKEIVKNYDVDGIHLDD 162 (311)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEecc
Confidence 999998877665 689999999994
No 39
>KOG1066 consensus Glucosidase II catalytic (alpha) subunit and related enzymes, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=0.16 Score=55.78 Aligned_cols=137 Identities=19% Similarity=0.215 Sum_probs=85.3
Q ss_pred cCCCCCCce---Ee--ccccccCccCCHHHHHHHHHHHHhccccCCceEEEeccccccccccCccCCCCcccccCCCCCc
Q 011701 30 TEHAILPPR---GW--NSYDSFCWIISEQDFLQSADIVAKRLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRM 104 (479)
Q Consensus 30 ~~~~~~Ppm---GW--nSW~~~~~~i~e~~i~~~ad~l~~gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~ 104 (479)
.|..+.||+ |+ |-|| ..+|++|++.-+-+.+. +.-|+.|-||=-.. |..-.+
T Consensus 348 TG~~~LPplFsiGYHQcRWN----Y~DE~DV~~Vd~~FDeh--diP~DviWLDIEht-----------------dgKrYF 404 (915)
T KOG1066|consen 348 TGTTPLPPLFSIGYHQCRWN----YNDEEDVLTVDQGFDEH--DIPYDVIWLDIEHT-----------------DGKRYF 404 (915)
T ss_pred cCCCCCCchhhcchhhcccc----ccchhhhhhhhcCcccc--CCccceEEEeeeec-----------------CCceeE
Confidence 366777884 43 4444 25678887765545443 23478888885543 223458
Q ss_pred eeCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhhcc--cCCCCC
Q 011701 105 VPDPDRWPSSKGGKGFTEVAKKVHDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIAI--KEKPCA 182 (479)
Q Consensus 105 ~~d~~~FP~~~~~~Gmk~la~~ih~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~--~~~~c~ 182 (479)
+.|+.+||. -+.|.++|.+||=|+=.=++|=+-... +--|...-.. .+|..+|... .+..|.
T Consensus 405 TWDk~~FP~------P~~Ml~kLa~kgRklV~IvDPHIKkD~---~Y~v~ke~~~-------~gy~VKd~~G~DyeG~CW 468 (915)
T KOG1066|consen 405 TWDKHKFPN------PKDMLKKLASKGRKLVTIVDPHIKKDD---GYFVHKEAKD-------KGYYVKDRDGSDYEGWCW 468 (915)
T ss_pred eeccccCCC------HHHHHHHHHhcCCceEEEeCcccccCC---CeEEhHHhhh-------CCeEEEecCCCccccccc
Confidence 999999996 999999999999999888887653211 1111111000 1222333221 122353
Q ss_pred CCCCCceeecCCchhHHHHHHHHHH
Q 011701 183 WMPHGFMAVNTKLGAGRAFLRSLHK 207 (479)
Q Consensus 183 ~~~~~~~~lD~t~p~~~~~~~~~~~ 207 (479)
||+-..+|+.+|++|+|..+.++
T Consensus 469 --PG~S~yiDf~nP~~r~wW~~~fa 491 (915)
T KOG1066|consen 469 --PGSSSYIDFINPEARKWWKSQFA 491 (915)
T ss_pred --CCCcccccccCHHHHHHHhhhcc
Confidence 67777899999999999987654
No 40
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=93.74 E-value=0.075 Score=39.98 Aligned_cols=55 Identities=13% Similarity=0.265 Sum_probs=28.9
Q ss_pred EEEEEECCCCCEEEEEEeCCCCCeEEEEEhhhhcccCCCCCCCCceEEEEecCCCcceeeccEEEEEEcCCcEEEEE
Q 011701 399 RSWIATGRQGEIYLAFFNLNNAKTAISAEIADLGKALPGWKLNPSCKGTEIWSGKDFGVMQKSVSTEVETHGCALFV 475 (479)
Q Consensus 399 ~vw~~~l~~g~~~valfN~~~~~~~vtv~l~~lg~~l~~~~~~~~~~vrDlW~g~~~g~~~~~~~~~l~~h~~~ll~ 475 (479)
+|=.+. .++..++-++|.++++++++++ ...+||.+++.. .+. ++|+|+++++++
T Consensus 3 ev~~R~-~~~~~y~F~~N~s~~~~~v~l~----------------~~~~dll~g~~~---~~~--~~L~p~~v~Vl~ 57 (58)
T PF08533_consen 3 EVTVRE-NDGGRYLFLLNFSDEPQTVTLP----------------ESYTDLLTGETV---SGG--LTLPPYGVRVLK 57 (58)
T ss_dssp EEEE-----ETTEEEEEE-SSS-EE--------------------TT-EEEES------------SEE-TTEEEEEE
T ss_pred EEEEEE-cCCCEEEEEEECCCCCEEEEcC----------------CCceecccCcce---eeE--EEECCCEEEEEE
Confidence 334443 3445688999999999888772 237899999753 333 899999999987
No 41
>KOG2366 consensus Alpha-D-galactosidase (melibiase) [Carbohydrate transport and metabolism]
Probab=93.60 E-value=0.021 Score=58.27 Aligned_cols=151 Identities=23% Similarity=0.228 Sum_probs=98.5
Q ss_pred HhhcCccEEEecCCCCCCC--CHHHHHHHHHHHHhhcCCceEEecCCCCCCCcchHHhhhccccEEEecCCCCCChhhHH
Q 011701 209 YADWSVDFVKHDCAFGDDL--DEGEISVVSEVFKGEHNRPIIYSLSPGTSAAPDMAQKINGLANMYRVTGDDWDSWPDVA 286 (479)
Q Consensus 209 ~a~wGvdylK~D~~~~~~~--~~~~y~~~~~al~~~~gr~i~l~~~~~~~~~p~~~~~~~~~a~~~Ris~D~~~~W~~~~ 286 (479)
+.+|++.+.++||..++.. +..-|..|.+++. +.| + ..+.+-||.-| +.|..+.
T Consensus 37 w~sW~~f~cniDCv~~pd~cIsE~l~~~~ad~mv-seG----------------~-----~~vGY~yi~iD--DCW~e~~ 92 (414)
T KOG2366|consen 37 WNSWERFRCNIDCVFGPDFCISEQLFKEMADAMV-SEG----------------L-----ADVGYEYINID--DCWSEVT 92 (414)
T ss_pred cccccceeeecccccCCccchhHHHHHHHHHHHH-HhH----------------H-----HhcCcEEEech--hhhhhhc
Confidence 6899999999999876543 3445888888887 333 1 12455566655 6676665
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCeEeecCCCCCC
Q 011701 287 AHFSVARDFAAANMIGSQGLKGRSWPDLDMLPLGWLTDANSTQGPYRACKLTLDEQKTQMTLWAMAKSPLMFGGDVRKLD 366 (479)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~g~~~~~wnDpDml~~g~~~~~~~~~~~~~~~~lt~~E~~t~~tlwa~~~sPL~ig~Dl~~l~ 366 (479)
+..+. +-.+....+.+.....--|.+-++|-+|.+.|.+ +. .+ ++..+ +.+..|..+.++...|-|+.++|
T Consensus 93 Rd~~g-rLva~~~rFP~Gi~~ladyvHs~GLKlGiYsD~G-~~----TC-~g~PG--S~~~e~~DA~tFA~WgvDylKlD 163 (414)
T KOG2366|consen 93 RDSDG-RLVADPSRFPSGIKALADYVHSKGLKLGIYSDAG-NF----TC-AGYPG--SLGHEESDAKTFADWGVDYLKLD 163 (414)
T ss_pred cCCcc-ccccChhhcccchhhhhhchhhcCCceeeeeccC-ch----hh-ccCCc--ccchhhhhhhhhHhhCCcEEecc
Confidence 54432 1111111111111112357788899999887654 21 22 34444 78889999999999999999999
Q ss_pred hhhhhcccCcceehcccCCCCCCCcc
Q 011701 367 DTTYGLITNPTILEIDHYSSNNKDAG 392 (479)
Q Consensus 367 ~~~~~lL~N~eliainQd~~g~~~~~ 392 (479)
.-...++++++...+.-+++....++
T Consensus 164 ~C~~~~~~~~~~Yp~ms~aLN~tGrp 189 (414)
T KOG2366|consen 164 GCFNNLITMPEGYPIMSRALNNTGRP 189 (414)
T ss_pred ccccccccccccchhHHHHHhccCCc
Confidence 87778888888887777776665543
No 42
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=93.27 E-value=0.85 Score=37.42 Aligned_cols=72 Identities=14% Similarity=0.220 Sum_probs=46.0
Q ss_pred CCeEEEEEECCCCCEEEEEEeCCCCCeEEEEEhhhhcccCCCCCCCCceEEEEecCCCcc--ee------------eccE
Q 011701 396 TGVRSWIATGRQGEIYLAFFNLNNAKTAISAEIADLGKALPGWKLNPSCKGTEIWSGKDF--GV------------MQKS 461 (479)
Q Consensus 396 ~~~~vw~~~l~~g~~~valfN~~~~~~~vtv~l~~lg~~l~~~~~~~~~~vrDlW~g~~~--g~------------~~~~ 461 (479)
...-+|.+....++.+|+++|.++.....++ .+++ + ..-+.+++.+..+. |- ..|.
T Consensus 9 ~~v~af~R~~~~~~~~lvv~Nf~~~~~~~~~---~~~~--p-----~~g~y~~vlnsd~~~~~g~~~~~~~~v~~~~~g~ 78 (95)
T PF02806_consen 9 NNVIAFERKDKGDDRVLVVFNFSPEAVYEDY---RIGV--P-----EAGRYKEVLNSDDEEYGGSGKGNSGEVTVDSNGR 78 (95)
T ss_dssp SSEEEEEETTTETTEEEEEEESSSS-EEEEE---EECS--S-----SSEEEEETTTTTCEEEEESSCSETSEEEEETTSE
T ss_pred CCEEEEEEcCCCCCEEEEEEECCCcccceeE---EeCC--C-----CcceeeEEeCCCccEECCcccccCceEEEeeCCE
Confidence 3445667753222378999999987444444 2332 2 13467777766432 21 1467
Q ss_pred EEEEEcCCcEEEEEEE
Q 011701 462 VSTEVETHGCALFVLN 477 (479)
Q Consensus 462 ~~~~l~~h~~~ll~lt 477 (479)
++++|||.++.+|+++
T Consensus 79 ~~~~lp~~s~~vl~~~ 94 (95)
T PF02806_consen 79 ITVTLPPYSALVLKLK 94 (95)
T ss_dssp EEEEESTTEEEEEEEE
T ss_pred EEEEECCCEEEEEEEc
Confidence 8999999999999986
No 43
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=92.73 E-value=0.79 Score=51.03 Aligned_cols=141 Identities=13% Similarity=0.137 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHhccccCCceEEEecc-cccccc-ccCccCCCCcccccCCCCCceeCCCCCCCCCCCCChHHHHHHHH
Q 011701 51 SEQDFLQSADIVAKRLLPHGYEYVVVDY-LWYRKK-VKDAHIDSEGIDLIDEWGRMVPDPDRWPSSKGGKGFTEVAKKVH 128 (479)
Q Consensus 51 ~e~~i~~~ad~l~~gl~~~Gy~yi~iDd-gW~~~~-~~g~~~~~~~~~~~d~~G~~~~d~~~FP~~~~~~Gmk~la~~ih 128 (479)
|.+.|.+.. -.-|+++|++.|.|=- ..+... ..| +|..+...++ .+|-. ...||.|++.+|
T Consensus 154 ~~~~i~~~l---~dyl~~LGvt~i~L~Pi~e~~~~~~wG----------Y~~~~y~~~~-~~~Gt---~~dlk~lV~~~H 216 (613)
T TIGR01515 154 SYRELADQL---IPYVKELGFTHIELLPVAEHPFDGSWG----------YQVTGYYAPT-SRFGT---PDDFMYFVDACH 216 (613)
T ss_pred CHHHHHHHH---HHHHHHcCCCEEEECCcccCCCCCCCC----------CCcccCcccc-cccCC---HHHHHHHHHHHH
Confidence 444444442 2235789999998821 111000 001 2223345555 35543 236999999999
Q ss_pred HcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhhcccCCCCCCCCCCceeecCCchhHHHHHHHHHHH
Q 011701 129 DMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGRAFLRSLHKQ 208 (479)
Q Consensus 129 ~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~~~ 208 (479)
++|++.=+-+.+. +++... ..+. .|.. .+.|...+... .....| +...+|..+|++++|+-+.++.
T Consensus 217 ~~Gi~VilD~V~N--H~~~~~-~~~~------~~~~-~~~y~~~~~~~-~~~~~w---~~~~~~~~~~~Vr~~l~~~~~~ 282 (613)
T TIGR01515 217 QAGIGVILDWVPG--HFPKDD-HGLA------EFDG-TPLYEHKDPRD-GEHWDW---GTLIFDYGRPEVRNFLVANALY 282 (613)
T ss_pred HCCCEEEEEeccc--CcCCcc-chhh------ccCC-CcceeccCCcc-CcCCCC---CCceecCCCHHHHHHHHHHHHH
Confidence 9999987766542 111110 0000 0100 00011111000 001112 1235789999999999888888
Q ss_pred Hh-hcCccEEEecCC
Q 011701 209 YA-DWSVDFVKHDCA 222 (479)
Q Consensus 209 ~a-~wGvdylK~D~~ 222 (479)
+. +.|||.+++|..
T Consensus 283 W~~ey~iDG~R~D~v 297 (613)
T TIGR01515 283 WAEFYHIDGLRVDAV 297 (613)
T ss_pred HHHHhCCcEEEEcCH
Confidence 75 799999999974
No 44
>cd06596 GH31_CPE1046 CPE1046 is an uncharacterized Clostridium perfringens protein with a glycosyl hydrolase family 31 (GH31) domain. The domain architecture of CPE1046 and its orthologs includes a C-terminal fibronectin type 3 (FN3) domain and a coagulation factor 5/8 type C domain in addition to the GH31 domain. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=91.96 E-value=0.99 Score=44.48 Aligned_cols=104 Identities=22% Similarity=0.379 Sum_probs=64.2
Q ss_pred ChHHHHHHHHHcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhhcccCCCCCCCCCCceeecCCchhH
Q 011701 119 GFTEVAKKVHDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAG 198 (479)
Q Consensus 119 Gmk~la~~ih~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~ 198 (479)
.|+.++++++++|.+.|+|+..+. +|
T Consensus 76 ~l~~~~~~~~~~g~~~glwt~~~l-----------------------------~~------------------------- 101 (261)
T cd06596 76 NLKEVVDYLHANGVETGLWTQSGL-----------------------------RD------------------------- 101 (261)
T ss_pred HHHHHHHHHHHcCCccccccccch-----------------------------hh-------------------------
Confidence 599999999999999999963211 12
Q ss_pred HHHHHHHHHHHhhcCccEEEecCCC-CCCCCH--HHHHHHHHHHHh-hcCCceEEecCCCCCCCcchHHhhhccccEEEe
Q 011701 199 RAFLRSLHKQYADWSVDFVKHDCAF-GDDLDE--GEISVVSEVFKG-EHNRPIIYSLSPGTSAAPDMAQKINGLANMYRV 274 (479)
Q Consensus 199 ~~~~~~~~~~~a~wGvdylK~D~~~-~~~~~~--~~y~~~~~al~~-~~gr~i~l~~~~~~~~~p~~~~~~~~~a~~~Ri 274 (479)
+.+....-|+.++|+|-.. +..++. ...++..+++++ .-.||++++-|-.... ..++-. =
T Consensus 102 ------~~~ev~~~g~~~~k~Dv~w~g~gy~~~l~~~ka~yeg~~~~~~~RpfiltRsg~aGs--------QRy~~~--W 165 (261)
T cd06596 102 ------IAKEVGAAGVRARKTDVAWVGAGYSFALNGVKAAADGIESNSNARPFIVTVDGWAGT--------QRYAGI--W 165 (261)
T ss_pred ------hhhhhccCCceEEeccchhhccchhHHHHHHHHHHHHHHhCCCCCCEEEEecCcccc--------CCCCCc--c
Confidence 1344566789999999532 222322 223344445542 2348999988731110 123322 4
Q ss_pred cCCCCCChhhHHHHHHHH
Q 011701 275 TGDDWDSWPDVAAHFSVA 292 (479)
Q Consensus 275 s~D~~~~W~~~~~~~~~~ 292 (479)
++|+..+|+.+..++-..
T Consensus 166 sGD~~stWe~Lr~sI~~~ 183 (261)
T cd06596 166 TGDQSGSWEYIRFHIPTY 183 (261)
T ss_pred CCCCcCcHHHHHHHHHHH
Confidence 788999999988765543
No 45
>PLN00196 alpha-amylase; Provisional
Probab=91.52 E-value=3.2 Score=44.19 Aligned_cols=35 Identities=14% Similarity=-0.079 Sum_probs=30.3
Q ss_pred ceeecCCchhHHHHHHHHHHHHh-hcCccEEEecCC
Q 011701 188 FMAVNTKLGAGRAFLRSLHKQYA-DWSVDFVKHDCA 222 (479)
Q Consensus 188 ~~~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~ 222 (479)
..-||.++|++++++.+..+.+. +.|||.+.+|+.
T Consensus 170 lpDLn~~np~V~~~l~~~~~wl~~~~GiDG~RlD~a 205 (428)
T PLN00196 170 APDIDHLNKRVQRELIGWLLWLKSDIGFDAWRLDFA 205 (428)
T ss_pred CCccCCCCHHHHHHHHHHHHHHhhCCCCCEEEeehh
Confidence 34689999999999988877774 799999999986
No 46
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=90.10 E-value=1.7 Score=34.92 Aligned_cols=71 Identities=15% Similarity=0.303 Sum_probs=44.2
Q ss_pred CCCeEEEEEECCCCCEEEEEEeCCCCCeEEEEEhhhhcccCCCCCCCCceEEEEecCCCcceeeccEEEEEEcCCcEEEE
Q 011701 395 ATGVRSWIATGRQGEIYLAFFNLNNAKTAISAEIADLGKALPGWKLNPSCKGTEIWSGKDFGVMQKSVSTEVETHGCALF 474 (479)
Q Consensus 395 ~~~~~vw~~~l~~g~~~valfN~~~~~~~vtv~l~~lg~~l~~~~~~~~~~vrDlW~g~~~g~~~~~~~~~l~~h~~~ll 474 (479)
.++.-|..+.. ++..++.+.|-+++++ ++++++..-.++ ..-+.+|+-+|+... .+. +++|+|.++.+|
T Consensus 8 ~~gvYvYfR~~-~~~tVmVilN~n~~~~--~ldl~ry~E~l~-----~~~~~~diltg~~i~-l~~--~l~l~~~~~~IL 76 (78)
T PF10438_consen 8 QDGVYVYFRYY-DGKTVMVILNKNDKEQ--TLDLKRYAEVLG-----GFTSAKDILTGKTID-LSK--NLTLPPKSVLIL 76 (78)
T ss_dssp BTTEEEEEEEE-SSEEEEEEEE-SSS-E--EEEGGGGHHHHT-----T--EEEETTT--EEE--SS--EEEE-TTEEEEE
T ss_pred cCCEEEEEEEc-CCCEEEEEEcCCCCCe--EEcHHHHHHhhC-----CCcceEECCCCCEEe-cCC--cEEECCCceEEE
Confidence 45666777764 4577889999888664 555554432223 246899999999764 333 689999999998
Q ss_pred EE
Q 011701 475 VL 476 (479)
Q Consensus 475 ~l 476 (479)
.|
T Consensus 77 el 78 (78)
T PF10438_consen 77 EL 78 (78)
T ss_dssp EE
T ss_pred EC
Confidence 76
No 47
>PLN02361 alpha-amylase
Probab=89.86 E-value=6.3 Score=41.59 Aligned_cols=36 Identities=11% Similarity=-0.079 Sum_probs=30.9
Q ss_pred ceeecCCchhHHHHHHHHHHHHh-hcCccEEEecCCC
Q 011701 188 FMAVNTKLGAGRAFLRSLHKQYA-DWSVDFVKHDCAF 223 (479)
Q Consensus 188 ~~~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~~ 223 (479)
..-||.++|+|++++....+.+. +-|||.+.+|+..
T Consensus 146 lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDavk 182 (401)
T PLN02361 146 VPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFAK 182 (401)
T ss_pred CCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 45689999999999988888776 4999999999864
No 48
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=88.87 E-value=3.5 Score=45.84 Aligned_cols=57 Identities=11% Similarity=0.174 Sum_probs=42.5
Q ss_pred eecCCchhHHHHHHHHHHHHh-hcCccEEEecCCCCCCCCHHHHHHHHHHHHhhcCCceEE
Q 011701 190 AVNTKLGAGRAFLRSLHKQYA-DWSVDFVKHDCAFGDDLDEGEISVVSEVFKGEHNRPIIY 249 (479)
Q Consensus 190 ~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~~~~~~~~~~y~~~~~al~~~~gr~i~l 249 (479)
-++..+|++++|+-..++.+. +.|||.+.+|.. ..++.+-.+.++++++ .....+++
T Consensus 288 ~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~--~~~~~~~~~~~~~~~~-~~~p~~~l 345 (605)
T TIGR02104 288 DTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLM--GIHDIETMNEIRKALN-KIDPNILL 345 (605)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCCEEEEech--hcCCHHHHHHHHHHHH-hhCCCeEE
Confidence 367789999999987778775 699999999975 3344555677888887 55555444
No 49
>PF14509 GH97_C: Glycosyl-hydrolase 97 C-terminal, oligomerisation; PDB: 3A24_A 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A.
Probab=88.86 E-value=4.7 Score=34.12 Aligned_cols=76 Identities=13% Similarity=0.134 Sum_probs=46.5
Q ss_pred CCCeEEEEEECC-CCCEEEEEEeCCCCCeEEEEEhhhhcccCCCCCCCCceEEEEecCCCc--------ce----ee--c
Q 011701 395 ATGVRSWIATGR-QGEIYLAFFNLNNAKTAISAEIADLGKALPGWKLNPSCKGTEIWSGKD--------FG----VM--Q 459 (479)
Q Consensus 395 ~~~~~vw~~~l~-~g~~~valfN~~~~~~~vtv~l~~lg~~l~~~~~~~~~~vrDlW~g~~--------~g----~~--~ 459 (479)
.+.+-+.++... .++++||..|-.+ .++++|+|+-|.. +..|+++=+=.+.+ .. .+ .
T Consensus 13 pGeyvviARr~~~G~~Wyvg~in~~~-~r~i~l~L~FL~~-------g~~y~a~i~~D~~~a~~~~~~~~~~~~~~v~~~ 84 (103)
T PF14509_consen 13 PGEYVVIARRKRDGDDWYVGGINGED-ARTITLPLSFLDK-------GKKYTATIYTDGPDADYTNPEAYKIETRKVTSG 84 (103)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEE-TT--EEEEEEGCCS-T-------T--EEEEEEEE-TTTCTTCTT-EEEEEEEE-TT
T ss_pred CceEEEEEEEcCCCCCEEEEEeeCCC-ceEEEEECcccCC-------CCcEEEEEEEeCCcccccCCcceEEEEEEECCC
Confidence 455567777653 3689999999654 4569999988862 33566644444431 11 11 3
Q ss_pred cEEEEEEcCCcEEEEEEEc
Q 011701 460 KSVSTEVETHGCALFVLNC 478 (479)
Q Consensus 460 ~~~~~~l~~h~~~ll~lt~ 478 (479)
+.++++|.|+|-.+++|+|
T Consensus 85 ~~l~i~l~~~GG~vi~~~p 103 (103)
T PF14509_consen 85 DKLTITLAPGGGFVIRITP 103 (103)
T ss_dssp -EEEEEE-TT-EEEEEEEE
T ss_pred CEEEEEEeCCCcEEEEEEC
Confidence 6899999999999999987
No 50
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=87.97 E-value=5.6 Score=41.75 Aligned_cols=21 Identities=38% Similarity=0.512 Sum_probs=19.9
Q ss_pred hHHHHHHHHHcCCeEEEEeec
Q 011701 120 FTEVAKKVHDMGLKFGIHVMK 140 (479)
Q Consensus 120 mk~la~~ih~~Glk~Giy~~p 140 (479)
++.|++.+|+.|||||+|.++
T Consensus 130 v~el~~A~rk~Glk~G~Y~S~ 150 (384)
T smart00812 130 VGELADAVRKRGLKFGLYHSL 150 (384)
T ss_pred HHHHHHHHHHcCCeEEEEcCH
Confidence 899999999999999999875
No 51
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=87.19 E-value=6.6 Score=34.75 Aligned_cols=123 Identities=12% Similarity=0.034 Sum_probs=66.3
Q ss_pred HHhccccCCceEEEeccc--cccccccCccCCCCcccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEee
Q 011701 62 VAKRLLPHGYEYVVVDYL--WYRKKVKDAHIDSEGIDLIDEWGRMVPDPDRWPSSKGGKGFTEVAKKVHDMGLKFGIHVM 139 (479)
Q Consensus 62 l~~gl~~~Gy~yi~iDdg--W~~~~~~g~~~~~~~~~~~d~~G~~~~d~~~FP~~~~~~Gmk~la~~ih~~Glk~Giy~~ 139 (479)
+.+-|+++|.+.|+|..+ +--.-. + .+.|...|.-. + +=|+.+++.+|++|++.=+|++
T Consensus 5 ~~~~lk~~~v~si~i~a~~h~g~ayY-----P-------t~~~~~hp~L~-~------Dllge~v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 5 FVDTLKEAHVNSITIFAKCHGGYAYY-----P-------TKVGPRHPGLK-R------DLLGEQVEACHERGIRVPAYFD 65 (132)
T ss_pred HHHHHHHhCCCEEEEEcccccEEEEc-----c-------CCCCcCCCCCC-c------CHHHHHHHHHHHCCCEEEEEEe
Confidence 444567788889999654 222110 0 01233333321 1 1379999999999999999998
Q ss_pred cCcccccccCCccccccCCCCCCcccCccchhhhhcccCC-CCCCCCCCceeecCCchhHHHHHHHHHH-HHhhcCccEE
Q 011701 140 KGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIKEK-PCAWMPHGFMAVNTKLGAGRAFLRSLHK-QYADWSVDFV 217 (479)
Q Consensus 140 pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~-~c~~~~~~~~~lD~t~p~~~~~~~~~~~-~~a~wGvdyl 217 (479)
.+... .++ +.+|+|..+|...... .-.....+++.+-+..|-. +|+...++ .+..+.+|.|
T Consensus 66 ~~~d~-------~~~---------~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~-e~~~~~i~Ei~~~y~~DGi 128 (132)
T PF14871_consen 66 FSWDE-------DAA---------ERHPEWFVRDADGRPMRGERFGYPGWYTCCLNSPYR-EFLLEQIREILDRYDVDGI 128 (132)
T ss_pred eecCh-------HHH---------HhCCceeeECCCCCCcCCCCcCCCCceecCCCccHH-HHHHHHHHHHHHcCCCCEE
Confidence 76431 111 1256777766542210 0001111244444444433 55544444 4456888887
Q ss_pred Eec
Q 011701 218 KHD 220 (479)
Q Consensus 218 K~D 220 (479)
=+|
T Consensus 129 F~D 131 (132)
T PF14871_consen 129 FFD 131 (132)
T ss_pred Eec
Confidence 665
No 52
>PLN02784 alpha-amylase
Probab=87.10 E-value=8.7 Score=44.10 Aligned_cols=146 Identities=10% Similarity=0.042 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhccccCCceEEEeccccccccccCccCCCCcccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHHcC
Q 011701 52 EQDFLQSADIVAKRLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMVPDPDRWPSSKGGKGFTEVAKKVHDMG 131 (479)
Q Consensus 52 e~~i~~~ad~l~~gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~~FP~~~~~~Gmk~la~~ih~~G 131 (479)
.+.|.+.++.+ +++|++.|.|==-.......| ++...-...| ++|-.. ..|+.|++.+|++|
T Consensus 520 ~~~I~ekldyL----~~LG~taIWLpP~~~s~s~~G----------Y~p~D~y~ld-s~yGT~---~ELk~LI~a~H~~G 581 (894)
T PLN02784 520 YMELGEKAAEL----SSLGFTVVWLPPPTESVSPEG----------YMPKDLYNLN-SRYGTI---DELKDLVKSFHEVG 581 (894)
T ss_pred HHHHHHHHHHH----HHhCCCEEEeCCCCCCCCCCC----------cCcccccccC-cCcCCH---HHHHHHHHHHHHCC
Confidence 45666666665 567888887644332221111 1111122334 355432 26999999999999
Q ss_pred CeEEEEeecCcccccc-cCCccccccCCCCCCcccCccchhhhhcccC--CCC--CCCC----CCceeecCCchhHHHHH
Q 011701 132 LKFGIHVMKGISNQAV-NANTLIYDYDKKGPYTEAGRQWRAQDIAIKE--KPC--AWMP----HGFMAVNTKLGAGRAFL 202 (479)
Q Consensus 132 lk~Giy~~pg~~~~~~-~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~--~~c--~~~~----~~~~~lD~t~p~~~~~~ 202 (479)
++. +.+--+.+.+. .++.. +. ...|.. -..|..+.+.... ... ..+. .+..-||.+||.+++.+
T Consensus 582 IkV--IlDiViNH~ag~f~~~~--g~--~~~f~g-~~dW~d~~i~~ddp~F~GrG~~~sgddf~~lPDLDh~npeVR~eL 654 (894)
T PLN02784 582 IKV--LGDAVLNHRCAHFQNQN--GV--WNIFGG-RLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDL 654 (894)
T ss_pred CEE--EEEECcccccccccCCC--Cc--ccccCC-eecCCCCcccCCCcccCCcCCcCcccccCcCCcCCCCCHHHHHHH
Confidence 985 44433333221 11100 00 001100 0112222221100 000 0000 12346889999999999
Q ss_pred HHHHHHHh-hcCccEEEecCC
Q 011701 203 RSLHKQYA-DWSVDFVKHDCA 222 (479)
Q Consensus 203 ~~~~~~~a-~wGvdylK~D~~ 222 (479)
....+.+. +.|||.+.+|+.
T Consensus 655 ~~WlkWL~~e~G~DGfRLDaV 675 (894)
T PLN02784 655 KEWLCWMRKEVGYDGWRLDFV 675 (894)
T ss_pred HHHHHHHHhccCCCEEEEecc
Confidence 88888775 799999999997
No 53
>PRK14706 glycogen branching enzyme; Provisional
Probab=86.45 E-value=4 Score=45.71 Aligned_cols=140 Identities=16% Similarity=0.176 Sum_probs=72.3
Q ss_pred HHHHHHHHhccccCCceEEEeccccccccccCccCCCCcccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCCeEE
Q 011701 56 LQSADIVAKRLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMVPDPDRWPSSKGGKGFTEVAKKVHDMGLKFG 135 (479)
Q Consensus 56 ~~~ad~l~~gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~~FP~~~~~~Gmk~la~~ih~~Glk~G 135 (479)
.+.++.+-.-|++.||+.|.|=---+.... +...++..+...++ .+|-. ...||.|++.+|++|++.=
T Consensus 167 ~~~~~~l~~ylk~lG~t~velmPv~e~~~~--------~~wGY~~~~~~~~~-~~~g~---~~~~~~lv~~~H~~gi~Vi 234 (639)
T PRK14706 167 RELAHRLGEYVTYMGYTHVELLGVMEHPFD--------GSWGYQVTGYYAPT-SRLGT---PEDFKYLVNHLHGLGIGVI 234 (639)
T ss_pred HHHHHHHHHHHHHcCCCEEEccchhcCCCC--------CCCCcCcccccccc-cccCC---HHHHHHHHHHHHHCCCEEE
Confidence 334444434578899999876221111000 00001223344555 34532 2379999999999999874
Q ss_pred EEeecCcccccccCCccccccCCCCCCcccCcc-chhhhhcccCCCCCCCCCCceeecCCchhHHHHHHHHHHHH-hhcC
Q 011701 136 IHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQ-WRAQDIAIKEKPCAWMPHGFMAVNTKLGAGRAFLRSLHKQY-ADWS 213 (479)
Q Consensus 136 iy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~-~~~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~~~~-a~wG 213 (479)
+=+.+. +.+.+. .-+. .++ |.. |...|.. ....+.| +-...|..+|+|++|+-+.++.+ .+.+
T Consensus 235 lD~v~n--H~~~~~-~~l~------~~d--g~~~y~~~~~~-~g~~~~w---~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 235 LDWVPG--HFPTDE-SGLA------HFD--GGPLYEYADPR-KGYHYDW---NTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred EEeccc--ccCcch-hhhh------ccC--CCcceeccCCc-CCcCCCC---CCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 433221 111100 0000 010 111 1111100 0011223 12347899999999998888886 5899
Q ss_pred ccEEEecCC
Q 011701 214 VDFVKHDCA 222 (479)
Q Consensus 214 vdylK~D~~ 222 (479)
||.+.+|..
T Consensus 300 iDG~R~Dav 308 (639)
T PRK14706 300 VDGLRVDAV 308 (639)
T ss_pred CCeEEEeee
Confidence 999999963
No 54
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=86.34 E-value=3.3 Score=45.91 Aligned_cols=71 Identities=8% Similarity=0.036 Sum_probs=56.8
Q ss_pred eEEEEEECCC-CCEEEEEEeCCCCCeEEEEEhhhhcccCCCCCCCCceEEEEecCCCcceee--ccEEEEEEcCCcEEEE
Q 011701 398 VRSWIATGRQ-GEIYLAFFNLNNAKTAISAEIADLGKALPGWKLNPSCKGTEIWSGKDFGVM--QKSVSTEVETHGCALF 474 (479)
Q Consensus 398 ~~vw~~~l~~-g~~~valfN~~~~~~~vtv~l~~lg~~l~~~~~~~~~~vrDlW~g~~~g~~--~~~~~~~l~~h~~~ll 474 (479)
+-+.+..+.+ +..+|++.|.+.+++.++|++..+. + ..++|+..++..+.. .+.+.++|++|+-+-|
T Consensus 610 vLa~v~~l~~~~~~~L~v~Nfs~~~~~~~l~l~~~~---~-------~~~~dl~~~~~~~~~~~~~~~~i~L~~y~~~wl 679 (688)
T TIGR02455 610 LLVMVHELPAGKGIQITALNFGADAIAEEICLPGFA---P-------GPVVDIIHESVEGDLTDDCELMINLDPYEALAL 679 (688)
T ss_pred EEEEEEEcCCCCceEEEeeccCCCCeeeEEeccccC---C-------CCceeccCCCccCCcCCCceeEEEecCcceEEE
Confidence 4455556653 4789999999999999999887663 1 379999999988775 3689999999999999
Q ss_pred EEEc
Q 011701 475 VLNC 478 (479)
Q Consensus 475 ~lt~ 478 (479)
++..
T Consensus 680 ~~~~ 683 (688)
T TIGR02455 680 RIVN 683 (688)
T ss_pred Eecc
Confidence 8864
No 55
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=86.26 E-value=6.1 Score=43.46 Aligned_cols=34 Identities=29% Similarity=0.259 Sum_probs=31.1
Q ss_pred eeecCCchhHHHHHHHHHHHHhhcCccEEEecCC
Q 011701 189 MAVNTKLGAGRAFLRSLHKQYADWSVDFVKHDCA 222 (479)
Q Consensus 189 ~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~ 222 (479)
.-||..+|++++++.+.++.+.+-|||.+.+|..
T Consensus 169 pdLn~~np~V~~~l~~~~~~W~~~GvDGfRlDa~ 202 (551)
T PRK10933 169 ADLNWENPAVRAELKKVCEFWADRGVDGLRLDVV 202 (551)
T ss_pred CccCCCCHHHHHHHHHHHHHHHHCCCcEEEEcch
Confidence 4689999999999999999999999999999964
No 56
>PLN02960 alpha-amylase
Probab=86.00 E-value=10 Score=43.77 Aligned_cols=133 Identities=11% Similarity=0.094 Sum_probs=68.4
Q ss_pred ccccCCceEEEeccccccccccCccCCCCcccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCccc
Q 011701 65 RLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMVPDPDRWPSSKGGKGFTEVAKKVHDMGLKFGIHVMKGISN 144 (479)
Q Consensus 65 gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~~FP~~~~~~Gmk~la~~ih~~Glk~Giy~~pg~~~ 144 (479)
-|++.||+.|.|=---+.... ....++..+...++ .+|-. ...|+.|++.+|++|++.=|=+.+. +
T Consensus 425 YLk~LGvt~IeLmPv~e~~~~--------~swGY~~~~yfa~~-~~yGt---p~dfk~LVd~aH~~GI~VILDvV~N--H 490 (897)
T PLN02960 425 HVKKAGYNAIQLIGVQEHKDY--------SSVGYKVTNFFAVS-SRFGT---PDDFKRLVDEAHGLGLLVFLDIVHS--Y 490 (897)
T ss_pred HHHHcCCCEEEECCcccCCCC--------CCCCCCcccCCCcc-cccCC---HHHHHHHHHHHHHCCCEEEEEeccc--c
Confidence 468899999977322111000 00001222334444 23332 2379999999999999875443321 1
Q ss_pred ccccCCccccccCCCCCCcccCccchhhhhcccCCCCCCCCCCceeecCCchhHHHHHHHHHHHH-hhcCccEEEecCC
Q 011701 145 QAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGRAFLRSLHKQY-ADWSVDFVKHDCA 222 (479)
Q Consensus 145 ~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~~~~-a~wGvdylK~D~~ 222 (479)
++.+....+. .|......|...+- ......|. -..+|..+|+|++|+-+.++.+ .+.+||.+.+|..
T Consensus 491 ~~~d~~~~L~------~FDG~~~~Yf~~~~--~g~~~~WG---~~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~DAV 558 (897)
T PLN02960 491 AAADEMVGLS------LFDGSNDCYFHSGK--RGHHKRWG---TRMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSL 558 (897)
T ss_pred cCCccccchh------hcCCCccceeecCC--CCccCCCC---CcccCCCCHHHHHHHHHHHHHHHHHHCCCceeeccc
Confidence 1111000000 01100000111110 00111221 1346899999999998888876 5899999999965
No 57
>PRK10785 maltodextrin glucosidase; Provisional
Probab=85.70 E-value=16 Score=40.70 Aligned_cols=175 Identities=9% Similarity=0.095 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHHHhccccCCceEEEeccccccccccCccCCCCcccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHHc
Q 011701 51 SEQDFLQSADIVAKRLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMVPDPDRWPSSKGGKGFTEVAKKVHDM 130 (479)
Q Consensus 51 ~e~~i~~~ad~l~~gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~~FP~~~~~~Gmk~la~~ih~~ 130 (479)
+-+.|.+.+|.+ +++|.+.|.|===.+....-| +|..-....|| +|-. ...++.|++.+|++
T Consensus 177 Dl~GI~~kLdYL----~~LGv~~I~L~Pif~s~s~hg----------Yd~~Dy~~iDp-~~Gt---~~df~~Lv~~aH~r 238 (598)
T PRK10785 177 DLDGISEKLPYL----KKLGVTALYLNPIFTAPSVHK----------YDTEDYRHVDP-QLGG---DAALLRLRHATQQR 238 (598)
T ss_pred CHHHHHHHHHHH----HHcCCCEEEeCCcccCCCCCC----------cCcccccccCc-ccCC---HHHHHHHHHHHHHC
Confidence 447777777776 568888886644333221100 12112233443 3432 23699999999999
Q ss_pred CCeEEEEeecCcccccccCCccccccCC---CCCCcc-cC--ccchhhhhcccCCCCCCCCCCceeecCCchhHHHHHH-
Q 011701 131 GLKFGIHVMKGISNQAVNANTLIYDYDK---KGPYTE-AG--RQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGRAFLR- 203 (479)
Q Consensus 131 Glk~Giy~~pg~~~~~~~~~s~i~~~~~---~~~~~~-~g--~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~- 203 (479)
|||+=|=.. ..+|+. .++++.... .+.|.. +. .+|..-+- .....|.+.-.+...+|..+|++++|+-
T Consensus 239 GikVilD~V--~NH~~~--~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~-~~~~~~w~g~~~lPdLN~~np~v~~~l~~ 313 (598)
T PRK10785 239 GMRLVLDGV--FNHTGD--SHPWFDRHNRGTGGACHHPDSPWRDWYSFSD-DGRALDWLGYASLPKLDFQSEEVVNEIYR 313 (598)
T ss_pred CCEEEEEEC--CCcCCC--CCHHHHHhhccccccccCCCCCcceeeEECC-CCCcCCcCCCCcCccccCCCHHHHHHHHh
Confidence 999643222 233332 233332110 001100 00 01110000 0001121111234578999999999985
Q ss_pred ---HHHHHHhh--cCccEEEecCCCC--CC----CCHHHHHHHHHHHHhhcCCceEE
Q 011701 204 ---SLHKQYAD--WSVDFVKHDCAFG--DD----LDEGEISVVSEVFKGEHNRPIIY 249 (479)
Q Consensus 204 ---~~~~~~a~--wGvdylK~D~~~~--~~----~~~~~y~~~~~al~~~~gr~i~l 249 (479)
++++.+.+ .|||.+.+|.... .. .+.+-.+.++++++ +...+.++
T Consensus 314 ~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk-~~~pd~~l 369 (598)
T PRK10785 314 GEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGGARNNLQHVAGITQAAK-EENPEAYV 369 (598)
T ss_pred hhhHHHHHhhcCCCCCcEEEEecHhHhccccCccccHHHHHHHHHHHH-hhCCCeEE
Confidence 36776654 6999999997532 10 11233467888887 65555444
No 58
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=85.13 E-value=3.2 Score=45.52 Aligned_cols=68 Identities=21% Similarity=0.344 Sum_probs=48.6
Q ss_pred eEEEEEECCCCCEEEEEEeCCCCCeEEEEEhhhhcccCCCCCCCCceEEEEecCCCcceeec-cEEEEEEcCCcEEEEEE
Q 011701 398 VRSWIATGRQGEIYLAFFNLNNAKTAISAEIADLGKALPGWKLNPSCKGTEIWSGKDFGVMQ-KSVSTEVETHGCALFVL 476 (479)
Q Consensus 398 ~~vw~~~l~~g~~~valfN~~~~~~~vtv~l~~lg~~l~~~~~~~~~~vrDlW~g~~~g~~~-~~~~~~l~~h~~~ll~l 476 (479)
.-++.+... ++.+|+++|.++++++++|++..+. .-...|+-+++..-... +.++++|+|+++.+|+|
T Consensus 470 v~~f~R~~~-~~~vlVv~N~s~~~~~v~l~~~~~~----------~~~~~dl~~~~~~~~~~~~~~~~~l~p~~~~~~~~ 538 (539)
T TIGR02456 470 VLAFLREYE-GERVLCVFNFSRNPQAVELDLSEFA----------GRVPVELIGGAPFPPVGGDGYLLTLGPHGFYWFRL 538 (539)
T ss_pred EEEEEEEcC-CcEEEEEEeCCCCCEEeeccccccc----------cCcceecccCCccccccCCcceEEECCceEEEEEe
Confidence 455555544 5778999999999888888764431 11368888887543333 35889999999999986
No 59
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=84.93 E-value=8.2 Score=42.39 Aligned_cols=34 Identities=21% Similarity=0.132 Sum_probs=30.9
Q ss_pred eeecCCchhHHHHHHHHHHHHhhcCccEEEecCC
Q 011701 189 MAVNTKLGAGRAFLRSLHKQYADWSVDFVKHDCA 222 (479)
Q Consensus 189 ~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~ 222 (479)
.-||.++|++++++...++.+.+-|||.+.+|..
T Consensus 162 pdln~~np~v~~~i~~~~~~W~~~giDGfRlDa~ 195 (543)
T TIGR02403 162 ADLNWENPEVREELKDVVNFWRDKGVDGFRLDVI 195 (543)
T ss_pred CccCCCCHHHHHHHHHHHHHHHHcCCCEEEEeee
Confidence 4689999999999999999988899999999965
No 60
>PRK12568 glycogen branching enzyme; Provisional
Probab=84.74 E-value=7.7 Score=43.97 Aligned_cols=139 Identities=14% Similarity=0.175 Sum_probs=72.6
Q ss_pred HHHHHHHhccccCCceEEEeccccccccccCccCCCCcccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCCeEEE
Q 011701 57 QSADIVAKRLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMVPDPDRWPSSKGGKGFTEVAKKVHDMGLKFGI 136 (479)
Q Consensus 57 ~~ad~l~~gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~~FP~~~~~~Gmk~la~~ih~~Glk~Gi 136 (479)
..++.+-.-|++.|++.|.|=--.+... + +...++..|...++ .+|.. ...+|.|++.+|++|++.=+
T Consensus 270 ~la~~ll~ylk~LGvt~I~LmPi~e~~~--~------~~wGY~~~~~~a~~-~~~G~---~~dfk~lV~~~H~~Gi~VIl 337 (730)
T PRK12568 270 TLAEQLIPYVQQLGFTHIELLPITEHPF--G------GSWGYQPLGLYAPT-ARHGS---PDGFAQFVDACHRAGIGVIL 337 (730)
T ss_pred HHHHHHHHHHHHcCCCEEEECccccCCC--C------CCCCCCCCcCCccC-cccCC---HHHHHHHHHHHHHCCCEEEE
Confidence 3333333356789999986632111100 0 00001223445555 35654 23799999999999998754
Q ss_pred EeecCcccccccCCccccccCCCCCCcccCc-cchhhhhcccCCCCCCCCCCceeecCCchhHHHHHHHHHHHH-hhcCc
Q 011701 137 HVMKGISNQAVNANTLIYDYDKKGPYTEAGR-QWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGRAFLRSLHKQY-ADWSV 214 (479)
Q Consensus 137 y~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~-~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~~~~-a~wGv 214 (479)
=+.+. +++.... .+. .|. |+ -|...|.. ......| +-..+|..+|++++|+-+.+..+ .+.||
T Consensus 338 D~V~n--H~~~d~~-~l~------~fd--g~~~Ye~~d~~-~g~~~~W---~~~~~N~~~peVr~~li~~a~~Wl~eyhI 402 (730)
T PRK12568 338 DWVSA--HFPDDAH-GLA------QFD--GAALYEHADPR-EGMHRDW---NTLIYNYGRPEVTAYLLGSALEWIEHYHL 402 (730)
T ss_pred Eeccc--cCCcccc-ccc------cCC--CccccccCCCc-CCccCCC---CCeecccCCHHHHHHHHHHHHHHHHHhCc
Confidence 43332 2211100 000 111 11 01111100 0001122 12357999999999998777776 58999
Q ss_pred cEEEecCC
Q 011701 215 DFVKHDCA 222 (479)
Q Consensus 215 dylK~D~~ 222 (479)
|.+.+|..
T Consensus 403 DG~R~DAv 410 (730)
T PRK12568 403 DGLRVDAV 410 (730)
T ss_pred eEEEEcCH
Confidence 99999964
No 61
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=84.38 E-value=6.8 Score=44.56 Aligned_cols=133 Identities=15% Similarity=0.131 Sum_probs=70.2
Q ss_pred ccccCCceEEEeccccccccccCccCCCCcccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCccc
Q 011701 65 RLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMVPDPDRWPSSKGGKGFTEVAKKVHDMGLKFGIHVMKGISN 144 (479)
Q Consensus 65 gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~~FP~~~~~~Gmk~la~~ih~~Glk~Giy~~pg~~~ 144 (479)
.|++.||+.|.|=--++..... +-| ++..+-..++ .+|-. ...||.|++.+|++|+++=+=+.+. +
T Consensus 259 ylk~LG~t~I~LmPi~e~~~~~-----~wG---Y~~~~~fa~~-~~~Gt---p~dlk~LVd~aH~~GI~VilDvV~n--H 324 (758)
T PLN02447 259 RIKALGYNAVQLMAIQEHAYYG-----SFG---YHVTNFFAVS-SRSGT---PEDLKYLIDKAHSLGLRVLMDVVHS--H 324 (758)
T ss_pred HHHHcCCCEEEECCccccCCCC-----CCC---cCcccCcccc-cccCC---HHHHHHHHHHHHHCCCEEEEEeccc--c
Confidence 4688999999874322211000 000 1222334454 35532 2379999999999999875443332 1
Q ss_pred ccccCCccccccCCCCCCcccCccchhhhhcccCCCCCCCCCCceeecCCchhHHHHHHHHHHHHh-hcCccEEEecCC
Q 011701 145 QAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGRAFLRSLHKQYA-DWSVDFVKHDCA 222 (479)
Q Consensus 145 ~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~ 222 (479)
+..+....+. .|......|...+- ......| +-..+|..+|+++.|+-+.++.+. +.+||.+.+|..
T Consensus 325 ~~~~~~~gl~------~fDg~~~~Yf~~~~--~g~~~~w---~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV 392 (758)
T PLN02447 325 ASKNTLDGLN------GFDGTDGSYFHSGP--RGYHWLW---DSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGV 392 (758)
T ss_pred cccccccccc------ccCCCCccccccCC--CCCcCcC---CCceecCCCHHHHHHHHHHHHHHHHHhCcccccccch
Confidence 1111000000 11100011221110 0011112 123689999999999988888875 699999999964
No 62
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=80.60 E-value=27 Score=38.36 Aligned_cols=100 Identities=12% Similarity=0.191 Sum_probs=56.6
Q ss_pred ChHHHHHHHHHcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhhcccCCCCCCCCCCceeecCCch--
Q 011701 119 GFTEVAKKVHDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLG-- 196 (479)
Q Consensus 119 Gmk~la~~ih~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p-- 196 (479)
.||.|++.+|++|++.=|=+.. .+++. .+.... .| .+ |...+ ..+.|. ..+|.++|
T Consensus 161 e~k~lV~~aH~~Gi~VilD~V~--NH~~~--~~~~~~-----~~---~~-y~~~~-----~~~~wg----~~~n~~~~~~ 218 (542)
T TIGR02402 161 DLKALVDAAHGLGLGVILDVVY--NHFGP--EGNYLP-----RY---AP-YFTDR-----YSTPWG----AAINFDGPGS 218 (542)
T ss_pred HHHHHHHHHHHCCCEEEEEEcc--CCCCC--cccccc-----cc---Cc-cccCC-----CCCCCC----CccccCCCcH
Confidence 6999999999999986332221 22211 111000 00 01 11111 112232 14788888
Q ss_pred -hHHHHHHHHHHHH-hhcCccEEEecCCCC-CCCCHH-HHHHHHHHHH
Q 011701 197 -AGRAFLRSLHKQY-ADWSVDFVKHDCAFG-DDLDEG-EISVVSEVFK 240 (479)
Q Consensus 197 -~~~~~~~~~~~~~-a~wGvdylK~D~~~~-~~~~~~-~y~~~~~al~ 240 (479)
++++|+-+.++.+ .+.|||.+.+|.... ...+.. -.+.++++++
T Consensus 219 ~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~l~~~~~~~~ 266 (542)
T TIGR02402 219 DEVRRYILDNALYWLREYHFDGLRLDAVHAIADTSAKHILEELAREVH 266 (542)
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhccccHHHHHHHHHHHHH
Confidence 9999987777776 479999999997432 111112 2456777776
No 63
>PRK14705 glycogen branching enzyme; Provisional
Probab=80.31 E-value=9.3 Score=45.81 Aligned_cols=123 Identities=15% Similarity=0.241 Sum_probs=68.8
Q ss_pred ccccCCceEEEe--------ccccccccccCccCCCCcccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCCeEEE
Q 011701 65 RLLPHGYEYVVV--------DYLWYRKKVKDAHIDSEGIDLIDEWGRMVPDPDRWPSSKGGKGFTEVAKKVHDMGLKFGI 136 (479)
Q Consensus 65 gl~~~Gy~yi~i--------DdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~~FP~~~~~~Gmk~la~~ih~~Glk~Gi 136 (479)
-|++.||+.|.| |..|- ++..+...++ .+|-. ..+||.|++.+|++|++.=|
T Consensus 774 Ylk~LGvt~IeLmPv~e~p~~~swG----------------Y~~~~y~ap~-~ryGt---~~dfk~lVd~~H~~GI~VIL 833 (1224)
T PRK14705 774 YVKWLGFTHVEFMPVAEHPFGGSWG----------------YQVTSYFAPT-SRFGH---PDEFRFLVDSLHQAGIGVLL 833 (1224)
T ss_pred HHHHhCCCEEEECccccCCCCCCCC----------------CCccccCCcC-cccCC---HHHHHHHHHHHHHCCCEEEE
Confidence 457789999866 22232 1223444554 34443 23899999999999998755
Q ss_pred EeecCcccccccCCccccccCCCCCCcccCc-cchhhhhcccCCCCCCCCCCceeecCCchhHHHHHHHHHHHH-hhcCc
Q 011701 137 HVMKGISNQAVNANTLIYDYDKKGPYTEAGR-QWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGRAFLRSLHKQY-ADWSV 214 (479)
Q Consensus 137 y~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~-~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~~~~-a~wGv 214 (479)
=+.+.= +.. +..-+ ..|. |+ -|...|... .....| +-..+|+.+|+++.|+-+.+..+ .+.+|
T Consensus 834 D~V~nH--~~~--d~~~l-----~~fd--g~~~y~~~d~~~-g~~~~W---g~~~fn~~~~eVr~fli~~a~~Wl~eyhi 898 (1224)
T PRK14705 834 DWVPAH--FPK--DSWAL-----AQFD--GQPLYEHADPAL-GEHPDW---GTLIFDFGRTEVRNFLVANALYWLDEFHI 898 (1224)
T ss_pred Eecccc--CCc--chhhh-----hhcC--CCcccccCCccc-CCCCCC---CCceecCCCHHHHHHHHHHHHHHHHHhCC
Confidence 443321 110 00000 0011 11 111111110 001112 12468999999999998777776 57999
Q ss_pred cEEEecCC
Q 011701 215 DFVKHDCA 222 (479)
Q Consensus 215 dylK~D~~ 222 (479)
|.+.+|..
T Consensus 899 DGfR~Dav 906 (1224)
T PRK14705 899 DGLRVDAV 906 (1224)
T ss_pred CcEEEeeh
Confidence 99999974
No 64
>PRK12313 glycogen branching enzyme; Provisional
Probab=79.89 E-value=14 Score=41.30 Aligned_cols=131 Identities=16% Similarity=0.194 Sum_probs=68.0
Q ss_pred ccccCCceEEEeccccccccccCccCCCCcccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCccc
Q 011701 65 RLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMVPDPDRWPSSKGGKGFTEVAKKVHDMGLKFGIHVMKGISN 144 (479)
Q Consensus 65 gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~~FP~~~~~~Gmk~la~~ih~~Glk~Giy~~pg~~~ 144 (479)
-|+++|++.|.|=--++..... ...+|..+...+++ +|-. ...||.|++.+|++|++.=+=+.+ .+
T Consensus 179 yl~~LGv~~i~L~Pi~~~~~~~--------~~GY~~~~y~~i~~-~~Gt---~~d~k~lv~~~H~~Gi~VilD~V~--nH 244 (633)
T PRK12313 179 YVKEMGYTHVEFMPLMEHPLDG--------SWGYQLTGYFAPTS-RYGT---PEDFMYLVDALHQNGIGVILDWVP--GH 244 (633)
T ss_pred HHHHcCCCEEEeCchhcCCCCC--------CCCCCCcCcCcCCC-CCCC---HHHHHHHHHHHHHCCCEEEEEECC--CC
Confidence 4578999998764332221000 00012233344543 3432 237999999999999996443322 12
Q ss_pred ccccCCccccccCCCCCCcccCc-cchhhhhcccCCCCCCCCCCceeecCCchhHHHHHHHHHHHHh-hcCccEEEecCC
Q 011701 145 QAVNANTLIYDYDKKGPYTEAGR-QWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGRAFLRSLHKQYA-DWSVDFVKHDCA 222 (479)
Q Consensus 145 ~~~~~~s~i~~~~~~~~~~~~g~-~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~ 222 (479)
++.... .+. .|. |. .|...+-. ......| +...+|..+|++++|+-+.++.+. +.|||.+.+|..
T Consensus 245 ~~~~~~-~~~------~~~--~~~~~~~~~~~-~~~~~~w---~~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~ 311 (633)
T PRK12313 245 FPKDDD-GLA------YFD--GTPLYEYQDPR-RAENPDW---GALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAV 311 (633)
T ss_pred CCCCcc-ccc------ccC--CCcceeecCCC-CCcCCCC---CCcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCh
Confidence 211100 000 010 10 01101100 0000012 123578999999999988888875 689999999954
No 65
>PRK05402 glycogen branching enzyme; Provisional
Probab=78.82 E-value=15 Score=41.89 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=29.1
Q ss_pred eeecCCchhHHHHHHHHHHHHh-hcCccEEEecCC
Q 011701 189 MAVNTKLGAGRAFLRSLHKQYA-DWSVDFVKHDCA 222 (479)
Q Consensus 189 ~~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~ 222 (479)
..+|..+|++++|+-+.++.+. +.|||.+.+|..
T Consensus 372 ~~~n~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v 406 (726)
T PRK05402 372 LIFNYGRNEVRNFLVANALYWLEEFHIDGLRVDAV 406 (726)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHhCCcEEEECCH
Confidence 3579999999999988888875 699999999963
No 66
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=78.72 E-value=18 Score=37.30 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.8
Q ss_pred hHHHHHHHHHcCCeEEEEeecC
Q 011701 120 FTEVAKKVHDMGLKFGIHVMKG 141 (479)
Q Consensus 120 mk~la~~ih~~Glk~Giy~~pg 141 (479)
++.|++.+|+.|||+|+|.++.
T Consensus 140 v~El~~A~rk~Glk~G~Y~S~~ 161 (346)
T PF01120_consen 140 VGELADACRKYGLKFGLYYSPW 161 (346)
T ss_dssp HHHHHHHHHHTT-EEEEEEESS
T ss_pred HHHHHHHHHHcCCeEEEEecch
Confidence 7999999999999999999875
No 67
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=78.50 E-value=8.1 Score=31.03 Aligned_cols=53 Identities=15% Similarity=0.190 Sum_probs=30.8
Q ss_pred EECCCCCEEEEEEeCCCCCeEEEEEhhhhcccCCCCCCCCceEEEEecCCCcceeeccEEEEEEcCCcEEEE
Q 011701 403 ATGRQGEIYLAFFNLNNAKTAISAEIADLGKALPGWKLNPSCKGTEIWSGKDFGVMQKSVSTEVETHGCALF 474 (479)
Q Consensus 403 ~~l~~g~~~valfN~~~~~~~vtv~l~~lg~~l~~~~~~~~~~vrDlW~g~~~g~~~~~~~~~l~~h~~~ll 474 (479)
....++..+++++|.++++.++. . . ...+-+|+.... ...+ .++|+||+++++
T Consensus 37 ~r~~~~~~l~v~~Nls~~~~~~~------~---~-------~~~~~l~~s~~~-~~~~--~~~L~p~~~~v~ 89 (89)
T PF11941_consen 37 RRTGGGERLLVAFNLSDEPVTVP------E---G-------PWGEVLFSSEPA-RAGG--AGTLPPWSVVVL 89 (89)
T ss_dssp EEEETTEEEEEEEE-SSS-EEEE------T---S-------CCEEEEEECSCS-SE----EEEE-TTEEEEE
T ss_pred EEEcCCceEEEEEecCCCcEEcc------C---C-------CCCeEEEcCCCc-cccc--CceECCCEEEEC
Confidence 33456778999999999877766 1 1 123444444322 2222 789999999875
No 68
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.09 E-value=5.6 Score=41.96 Aligned_cols=88 Identities=14% Similarity=0.100 Sum_probs=55.5
Q ss_pred ChHHHHHHHHHcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhhcccCCCCCCCCC--CceeecCCch
Q 011701 119 GFTEVAKKVHDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIKEKPCAWMPH--GFMAVNTKLG 196 (479)
Q Consensus 119 Gmk~la~~ih~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~--~~~~lD~t~p 196 (479)
=++.++++.|++||++==|..++... .+.|++-..++... ....+++... ...+ .-.++|+-||
T Consensus 116 pLa~~I~~AHkr~l~v~aWf~~~~~a---~~~s~~~~~~p~~~-~~~~~~~~~~----------~~~~~~~~~~ldPg~P 181 (418)
T COG1649 116 PLAFVIAEAHKRGLEVHAWFNPYRMA---PPTSPLTKRHPHWL-TTKRPGWVYV----------RHQGWGKRVWLDPGIP 181 (418)
T ss_pred hHHHHHHHHHhcCCeeeechhhcccC---CCCChhHhhCCCCc-ccCCCCeEEE----------ecCCceeeeEeCCCCh
Confidence 37888889999999999999887642 22233222111000 0000111110 0112 2578999999
Q ss_pred hHHHHHHHHH-HHHhhcCccEEEec
Q 011701 197 AGRAFLRSLH-KQYADWSVDFVKHD 220 (479)
Q Consensus 197 ~~~~~~~~~~-~~~a~wGvdylK~D 220 (479)
++|+|+.+++ +....+-||.|-+|
T Consensus 182 evq~~i~~lv~evV~~YdvDGIQfD 206 (418)
T COG1649 182 EVQDFITSLVVEVVRNYDVDGIQFD 206 (418)
T ss_pred HHHHHHHHHHHHHHhCCCCCceecc
Confidence 9999997764 56689999999998
No 69
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=77.98 E-value=21 Score=41.51 Aligned_cols=59 Identities=15% Similarity=0.108 Sum_probs=45.6
Q ss_pred ecCCchhHHHHHHHHHHHHh-hcCccEEEecCCCCCCCCHHHHHHHHHHHHhhcCCceEEecC
Q 011701 191 VNTKLGAGRAFLRSLHKQYA-DWSVDFVKHDCAFGDDLDEGEISVVSEVFKGEHNRPIIYSLS 252 (479)
Q Consensus 191 lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~~~~~~~~~~y~~~~~al~~~~gr~i~l~~~ 252 (479)
+++.||.+++|+-..++.++ +.|||.+.+|-+. .++.+-...++++++ +...++++.-.
T Consensus 466 ~a~e~~~Vrk~iiDsl~~W~~ey~VDGFRfDlm~--~~~~~f~~~~~~~l~-~i~pdi~l~GE 525 (898)
T TIGR02103 466 TATEHRMMAKLIVDSLVVWAKDYKVDGFRFDLMG--HHPKAQMLAAREAIK-ALTPEIYFYGE 525 (898)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCEEEEechh--hCCHHHHHHHHHHHH-HhCCCEEEEec
Confidence 47889999999977778875 8999999999863 355666788888888 77666665443
No 70
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=77.42 E-value=21 Score=39.10 Aligned_cols=34 Identities=18% Similarity=0.138 Sum_probs=31.0
Q ss_pred eeecCCchhHHHHHHHHHHHHhhcCccEEEecCC
Q 011701 189 MAVNTKLGAGRAFLRSLHKQYADWSVDFVKHDCA 222 (479)
Q Consensus 189 ~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~ 222 (479)
..+|.++|++++++...++.+.+-|||.+.+|.+
T Consensus 166 pdln~~np~vr~~l~~~~~~w~~~GvDGfRlDav 199 (539)
T TIGR02456 166 PDLNYDNPAVHDAVHDVMRFWLDLGVDGFRLDAV 199 (539)
T ss_pred CccCCCCHHHHHHHHHHHHHHHHcCCCEEEEecH
Confidence 4689999999999999999999999999999975
No 71
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=76.56 E-value=24 Score=35.95 Aligned_cols=84 Identities=15% Similarity=0.083 Sum_probs=52.1
Q ss_pred HHHHHHHHHcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccch--hhhhcccCCCCCCCCCCceeecCCchhH
Q 011701 121 TEVAKKVHDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWR--AQDIAIKEKPCAWMPHGFMAVNTKLGAG 198 (479)
Q Consensus 121 k~la~~ih~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~--~~di~~~~~~c~~~~~~~~~lD~t~p~~ 198 (479)
++-++.+|..|-++=-|++-|... .-.+-+. + .|. ..+... ...-.| |++ ++||.++|+-
T Consensus 84 ~~~i~~Lk~~g~~viaYlSvGe~E----~~R~y~~--------~---~~~~~~~~~l~-~~n~~W-~g~-~~vd~~~~~W 145 (315)
T TIGR01370 84 PEEIVRAAAAGRWPIAYLSIGAAE----DYRFYWQ--------K---GWKVNAPAWLG-NEDPDW-PGN-YDVKYWDPEW 145 (315)
T ss_pred HHHHHHHHhCCcEEEEEEEchhcc----ccchhhh--------h---hhhcCCHHHhC-CCCCCC-CCc-eeEecccHHH
Confidence 344567899999988888877531 1011000 0 000 001100 011112 333 7999999999
Q ss_pred HHHHHHHHHHHhhcCccEEEecCC
Q 011701 199 RAFLRSLHKQYADWSVDFVKHDCA 222 (479)
Q Consensus 199 ~~~~~~~~~~~a~wGvdylK~D~~ 222 (479)
++++...++.+.+-|||.|=+|.+
T Consensus 146 ~~il~~rl~~l~~kGfDGvfLD~l 169 (315)
T TIGR01370 146 KAIAFSYLDRVIAQGFDGVYLDLI 169 (315)
T ss_pred HHHHHHHHHHHHHcCCCeEeeccc
Confidence 999977788889999999999976
No 72
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=75.21 E-value=16 Score=40.61 Aligned_cols=135 Identities=15% Similarity=0.222 Sum_probs=73.2
Q ss_pred HHHHHHHHHhccccCCceEEEe--------ccccccccccCccCCCCcccccCCCCCceeCCCCCCCCCCCCChHHHHHH
Q 011701 55 FLQSADIVAKRLLPHGYEYVVV--------DYLWYRKKVKDAHIDSEGIDLIDEWGRMVPDPDRWPSSKGGKGFTEVAKK 126 (479)
Q Consensus 55 i~~~ad~l~~gl~~~Gy~yi~i--------DdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~~FP~~~~~~Gmk~la~~ 126 (479)
-.+.|+.+-.-|++.||+.|.| |-+|-- |..|..-|. ++|-. ..+||+|+|.
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGY----------------q~~g~yAp~-sryGt---Pedfk~fVD~ 222 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWGY----------------QGTGYYAPT-SRYGT---PEDFKALVDA 222 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCC----------------Ccceecccc-ccCCC---HHHHHHHHHH
Confidence 3344444334468899999987 666643 223444454 56643 2389999999
Q ss_pred HHHcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhhcccCCCCCCCCCCceeecCCchhHHHHHHHHH
Q 011701 127 VHDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGRAFLRSLH 206 (479)
Q Consensus 127 ih~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~ 206 (479)
+|++|+-.=|=+.|+=.. ++..-+ ..|... .-+...|.. ....-.| +.+.-|..+++|+.|+=+.+
T Consensus 223 aH~~GIgViLD~V~~HF~----~d~~~L-----~~fdg~-~~~e~~~~~-~~~~~~W---g~~i~~~gr~EVR~Fll~na 288 (628)
T COG0296 223 AHQAGIGVILDWVPNHFP----PDGNYL-----ARFDGT-FLYEHEDPR-RGEHTDW---GTAIFNYGRNEVRNFLLANA 288 (628)
T ss_pred HHHcCCEEEEEecCCcCC----CCcchh-----hhcCCc-cccccCCcc-cccCCCc---ccchhccCcHHHHHHHHHHH
Confidence 999998653333332110 000000 011110 001112211 0111123 22333455899999996655
Q ss_pred HH-HhhcCccEEEecCCC
Q 011701 207 KQ-YADWSVDFVKHDCAF 223 (479)
Q Consensus 207 ~~-~a~wGvdylK~D~~~ 223 (479)
.. +.++.||.|.+|...
T Consensus 289 l~Wl~~yHiDGlRvDAV~ 306 (628)
T COG0296 289 LYWLEEYHIDGLRVDAVA 306 (628)
T ss_pred HHHHHHhCCcceeeehhh
Confidence 55 579999999999863
No 73
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=73.17 E-value=5.7 Score=38.31 Aligned_cols=142 Identities=14% Similarity=0.216 Sum_probs=80.5
Q ss_pred cCCHHHHHHHHHHHHhccccCCceEEEeccccccccccCccCCCCcccccCCCCCceeC-CCCCCCCCCCCChHHHHHHH
Q 011701 49 IISEQDFLQSADIVAKRLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMVPD-PDRWPSSKGGKGFTEVAKKV 127 (479)
Q Consensus 49 ~i~e~~i~~~ad~l~~gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d-~~~FP~~~~~~Gmk~la~~i 127 (479)
.++++.+....+..=..|.+.||+.|.+=|-= ....+..+ +--||.- =+.+++..+
T Consensus 66 ~ls~~~v~~~lq~~i~~le~~G~d~illlCTG-------------------~F~~l~~~~~lleP~r----il~~lV~al 122 (221)
T PF07302_consen 66 VLSKKKVEPRLQACIAQLEAQGYDVILLLCTG-------------------EFPGLTARNPLLEPDR----ILPPLVAAL 122 (221)
T ss_pred EEEHHHHHHHHHHHHHHHHHCCCCEEEEeccC-------------------CCCCCCCCcceeehHH----hHHHHHHHh
Confidence 36788888877754445777899988875310 11122211 1334541 267888888
Q ss_pred HHcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhhcccCCCCCCCCCCceeecCCchhHHHHHHHHHH
Q 011701 128 HDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGRAFLRSLHK 207 (479)
Q Consensus 128 h~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~~ 207 (479)
... .+.|+-+ |-...... .. ..|. .... ..| +....|-++ ..+-+..-++
T Consensus 123 ~~~-~~vGViv-P~~eQ~~~-----~~------------~kW~--~l~~--~~~------~a~asPy~~-~~~~l~~Aa~ 172 (221)
T PF07302_consen 123 VGG-HQVGVIV-PLPEQIAQ-----QA------------EKWQ--PLGN--PVV------VAAASPYEG-DEEELAAAAR 172 (221)
T ss_pred cCC-CeEEEEe-cCHHHHHH-----HH------------HHHH--hcCC--CeE------EEEeCCCCC-CHHHHHHHHH
Confidence 776 7999975 32211000 00 0011 0000 000 011111111 1344455578
Q ss_pred HHhhcCccEEEecCCCCCCCCHHHH-HHHHHHHHhhcCCceEEec
Q 011701 208 QYADWSVDFVKHDCAFGDDLDEGEI-SVVSEVFKGEHNRPIIYSL 251 (479)
Q Consensus 208 ~~a~wGvdylK~D~~~~~~~~~~~y-~~~~~al~~~~gr~i~l~~ 251 (479)
.++++|.|+|=+||+. | ..|++.+++++|.|++++-
T Consensus 173 ~L~~~gadlIvLDCmG--------Yt~~~r~~~~~~~g~PVlLsr 209 (221)
T PF07302_consen 173 ELAEQGADLIVLDCMG--------YTQEMRDIVQRALGKPVLLSR 209 (221)
T ss_pred HHHhcCCCEEEEECCC--------CCHHHHHHHHHHhCCCEEeHH
Confidence 8999999999999984 5 4788888888999999864
No 74
>PF09260 DUF1966: Domain of unknown function (DUF1966); InterPro: IPR015340 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This domain is found in various fungal alpha-amylase proteins. Its exact function has not, as yet, been defined []. ; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0016052 carbohydrate catabolic process; PDB: 2AAA_A 2GUY_A 2TAA_B 6TAA_A 2GVY_B 7TAA_A 3KWX_A.
Probab=72.70 E-value=20 Score=29.65 Aligned_cols=69 Identities=7% Similarity=0.150 Sum_probs=38.6
Q ss_pred EEEEECCCCCEEEEEEeCCC-CCeEEEEEhhhhcccCCCCCCCCceEEEEecCCCccee-eccEEEEEEcCCcEEEEE
Q 011701 400 SWIATGRQGEIYLAFFNLNN-AKTAISAEIADLGKALPGWKLNPSCKGTEIWSGKDFGV-MQKSVSTEVETHGCALFV 475 (479)
Q Consensus 400 vw~~~l~~g~~~valfN~~~-~~~~vtv~l~~lg~~l~~~~~~~~~~vrDlW~g~~~g~-~~~~~~~~l~~h~~~ll~ 475 (479)
++.|.....+.++++.|.+. ....+++++...+. + ....|.|+.+.++.-. ..|.+++.+....-++|-
T Consensus 10 a~rKG~~g~qvi~vltN~Gs~~~~~~~~~v~~~~f--~-----~g~~v~dVlsc~~~tv~~~G~l~v~m~~G~P~Vl~ 80 (91)
T PF09260_consen 10 AFRKGPDGSQVIVVLTNQGSNSGGSYTLTVPNTGF--S-----AGTEVTDVLSCTSYTVDSNGTLTVPMSNGEPRVLY 80 (91)
T ss_dssp EEEESSTTT-EEEEEE-S-T-T---EEEEESS-----------TT-EEEETTTTEEEE--TTS-EEEEESTT--EEEE
T ss_pred EEEeCCCCCEEEEEEeCCCcCCCCcEEEEEcCCCC--C-----CCCEEEEEecCCEEEECCCCEEEEEEcCCceEEEE
Confidence 44443333456777888887 57788888876653 1 2478999999987644 357899998887777664
No 75
>PRK03705 glycogen debranching enzyme; Provisional
Probab=68.49 E-value=40 Score=38.00 Aligned_cols=33 Identities=18% Similarity=0.109 Sum_probs=29.0
Q ss_pred eecCCchhHHHHHHHHHHHHh-hcCccEEEecCC
Q 011701 190 AVNTKLGAGRAFLRSLHKQYA-DWSVDFVKHDCA 222 (479)
Q Consensus 190 ~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~ 222 (479)
.++..||.+++|+-..++.+. +.|||.+.+|-.
T Consensus 305 ~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a 338 (658)
T PRK03705 305 TLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLA 338 (658)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcH
Confidence 578999999999988888876 699999999964
No 76
>PLN02877 alpha-amylase/limit dextrinase
Probab=63.89 E-value=78 Score=37.26 Aligned_cols=58 Identities=10% Similarity=0.032 Sum_probs=40.5
Q ss_pred cCCchhHHHHHHHHHHHHh-hcCccEEEecCCCCCCCCHHHHHHHHHHHHhhc--------CCceEEecC
Q 011701 192 NTKLGAGRAFLRSLHKQYA-DWSVDFVKHDCAFGDDLDEGEISVVSEVFKGEH--------NRPIIYSLS 252 (479)
Q Consensus 192 D~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~~~~~~~~~~y~~~~~al~~~~--------gr~i~l~~~ 252 (479)
...||.++.|+-..++.++ ++|||.+.+|-+.. ++.+....++.+|+ +. |+.|++..-
T Consensus 530 Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~--i~~~tm~~~~~~L~-~i~~~~~~~dg~~i~lyGE 596 (970)
T PLN02877 530 ASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGH--LMKRTMVRAKDALQ-SLTLERDGVDGSSIYLYGE 596 (970)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCCEEEEEcccc--ccHHHHHHHHHHHH-HHhhhhcccCCCceEEEEe
Confidence 5678999999866677775 79999999998642 44455556666665 33 566766544
No 77
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=60.71 E-value=66 Score=38.52 Aligned_cols=57 Identities=25% Similarity=0.221 Sum_probs=41.4
Q ss_pred eecCCchhHHHHHHHHHHHHh-hcCccEEEecCCCCCCCCHHHHHHHHHHHHhhcCCceEE
Q 011701 190 AVNTKLGAGRAFLRSLHKQYA-DWSVDFVKHDCAFGDDLDEGEISVVSEVFKGEHNRPIIY 249 (479)
Q Consensus 190 ~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~~~~~~~~~~y~~~~~al~~~~gr~i~l 249 (479)
.++..||.++.|+-..++.+. +.|||.+.+|.+. ..+.+....++.+++ +....+++
T Consensus 611 ~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g--~~d~~~~~~~~~~l~-~~dP~~~l 668 (1111)
T TIGR02102 611 RLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMG--DHDAASIEIAYKEAK-AINPNIIM 668 (1111)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccc--cCCHHHHHHHHHHHH-HhCcCEEE
Confidence 467899999999977777775 7999999999763 244555666777776 54444444
No 78
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=58.85 E-value=93 Score=30.61 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhhcCccEEEecCCCCCCCCHHHHHHHHHHHHhhcCCceEEecCC
Q 011701 198 GRAFLRSLHKQYADWSVDFVKHDCAFGDDLDEGEISVVSEVFKGEHNRPIIYSLSP 253 (479)
Q Consensus 198 ~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~y~~~~~al~~~~gr~i~l~~~~ 253 (479)
.+.|++++.+.+.++|+|.|=+|+-++. +.+.|..+-+.|+++.++..++++.+
T Consensus 97 r~~f~~s~~~~~~~~~~DGiDiDwE~p~--~~~~~~~ll~~Lr~~~~~~~~lT~Ap 150 (256)
T cd06546 97 FERYYGQLRDMIRRRGLDGLDLDVEEPM--SLDGIIRLIDRLRSDFGPDFIITLAP 150 (256)
T ss_pred HHHHHHHHHHHHHHhCCCceEEeeecCC--CHhHHHHHHHHHHHHhCCCcEEEECC
Confidence 3468888888899999999999986642 24567777777775667776776654
No 79
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=57.78 E-value=43 Score=30.71 Aligned_cols=27 Identities=15% Similarity=0.420 Sum_probs=21.4
Q ss_pred CCCCEEEEEEeCCCCCeEEEEEhhhhc
Q 011701 406 RQGEIYLAFFNLNNAKTAISAEIADLG 432 (479)
Q Consensus 406 ~~g~~~valfN~~~~~~~vtv~l~~lg 432 (479)
..++.+|.++|++.++++++|.+..+.
T Consensus 102 ~~~~l~v~vVN~~~~~~~v~l~l~g~~ 128 (177)
T PF06964_consen 102 DGGELYVKVVNRSSEPQTVTLNLQGFS 128 (177)
T ss_dssp TTTEEEEEEEE-SSSBEEEEEEETTST
T ss_pred CCCEEEEEEEECCCCCEEEEEEEcCCC
Confidence 344799999999888999999987654
No 80
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=57.57 E-value=23 Score=34.61 Aligned_cols=51 Identities=14% Similarity=0.112 Sum_probs=42.2
Q ss_pred ceeecCCchhHHHHHHHHHHHHhhcCccEEEecCCCCCCCCHHHHHHHHHHHH
Q 011701 188 FMAVNTKLGAGRAFLRSLHKQYADWSVDFVKHDCAFGDDLDEGEISVVSEVFK 240 (479)
Q Consensus 188 ~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~y~~~~~al~ 240 (479)
...+|..+|++++++...++.+.+-|||.+.+|... .+..+....+.++++
T Consensus 136 ~~dln~~n~~v~~~i~~~~~~w~~~giDGfR~D~~~--~~~~~~~~~~~~~~~ 186 (316)
T PF00128_consen 136 LPDLNYENPEVREYIIDVLKFWIEEGIDGFRLDAAK--HIPKEFWKEFRDEVK 186 (316)
T ss_dssp SEEBETTSHHHHHHHHHHHHHHHHTTESEEEETTGG--GSSHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhcccccchhhceEeEEEEcccc--ccchhhHHHHhhhhh
Confidence 467899999999999989999999999999999853 344556677888887
No 81
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=57.05 E-value=53 Score=36.22 Aligned_cols=233 Identities=15% Similarity=0.234 Sum_probs=105.2
Q ss_pred CCCCCCceEeccccccCccCCHHHHHHHHHHHHhccccCCceEEEeccccccccccCccCCCCcccccCCCCCceeCCCC
Q 011701 31 EHAILPPRGWNSYDSFCWIISEQDFLQSADIVAKRLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMVPDPDR 110 (479)
Q Consensus 31 ~~~~~PpmGWnSW~~~~~~i~e~~i~~~ad~l~~gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~~ 110 (479)
-+.+-|=+||=|= |....+.+...+..+.|++ +..+.++.= -|+-... .+-+.. .-.++ ..
T Consensus 98 dW~~fPRYGfls~--f~~~~~~~~~~~~i~~L~~----yHIN~~QFY-DW~~rH~--~Pl~~~---------~~~~~-~~ 158 (559)
T PF13199_consen 98 DWTRFPRYGFLSD--FDKSKSAEDIEAEIDQLNR----YHINGLQFY-DWMYRHH--KPLPGT---------NGQPD-QT 158 (559)
T ss_dssp STTSS--EEEE-----GGGGGHHHHHHHHHHHHH----TT--EEEET-S--SBTT--B-S-SS---------S-EEE--T
T ss_pred CcccCCcceEecC--CCCcCCchhHHHHHHHHHh----hCcCeEEEE-eeccccC--CcCCCC---------CCchh-hh
Confidence 5666677777654 4444567788888887754 333444443 2443211 000000 00111 13
Q ss_pred CCCCCCC----CChHHHHHHHHHcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhhcccCCCCCCCCC
Q 011701 111 WPSSKGG----KGFTEVAKKVHDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIKEKPCAWMPH 186 (479)
Q Consensus 111 FP~~~~~----~Gmk~la~~ih~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~ 186 (479)
|++-.+- .=+|.+++.+|++|+|.=.|.+-........ ..++... +..|..... ...+.. ...-.| +.
T Consensus 159 w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~~~~-~~gv~~e--W~ly~d~~~--~~~~~~--~l~~~w-~s 230 (559)
T PF13199_consen 159 WTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAANNNYE-EDGVSPE--WGLYKDDSH--SNQDTY--DLPDGW-PS 230 (559)
T ss_dssp T-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEETT---S--SS-G--GBEEESSSB--TSB-EE--EETT-E---
T ss_pred hhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhccccCcc-cccCCch--hhhhhccCC--Ccccee--ecCccc-cc
Confidence 3331100 0279999999999999999976543221110 1111111 112211100 000000 000011 11
Q ss_pred CceeecCCchhHHHHH-HHHHHHHhhcCccEEEecCCCC---------CCC-C-HHHHHHHHHHHHhhc-CCceEEecCC
Q 011701 187 GFMAVNTKLGAGRAFL-RSLHKQYADWSVDFVKHDCAFG---------DDL-D-EGEISVVSEVFKGEH-NRPIIYSLSP 253 (479)
Q Consensus 187 ~~~~lD~t~p~~~~~~-~~~~~~~a~wGvdylK~D~~~~---------~~~-~-~~~y~~~~~al~~~~-gr~i~l~~~~ 253 (479)
..|.+||.+|+=|.|+ ++..+.+...|||.+-+|=... ..+ + .+.|..+-++++++. +.+++++--.
T Consensus 231 ~lyl~dP~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~~~k~lv~N~V~ 310 (559)
T PF13199_consen 231 DLYLMDPGNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKEALPDKYLVFNAVS 310 (559)
T ss_dssp EEEEB-TT-HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHHHSTTSEEEEB-GG
T ss_pred ceEEecCCCHHHHHHHHHHHHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHHhCCCCceeeeccC
Confidence 2689999999999988 5556678899999999995432 112 2 346777888887555 5667775431
Q ss_pred CCCCCcchHH---hhhccccEEEecCCCCCChhhHHHHHHHHHHH
Q 011701 254 GTSAAPDMAQ---KINGLANMYRVTGDDWDSWPDVAAHFSVARDF 295 (479)
Q Consensus 254 ~~~~~p~~~~---~~~~~a~~~Ris~D~~~~W~~~~~~~~~~~~~ 295 (479)
+... ...+. .=.-|...| |-.++..++.+.++..+.+
T Consensus 311 ~~g~-~~~a~~~~~d~lY~EvW----~~~~~Y~~Lk~~i~~~r~~ 350 (559)
T PF13199_consen 311 GYGI-EQIAKTSKVDFLYNEVW----DDYDTYGDLKRIIDQNRKY 350 (559)
T ss_dssp GTTH-HHHTT-S--SSEEEE------SBS-BHHHHHHHHHHHHHH
T ss_pred ccch-hhhhcccccceeeeecc----cccccHHHHHHHHHHHhhh
Confidence 1000 00000 001255666 3446778888888888877
No 82
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=55.92 E-value=12 Score=36.73 Aligned_cols=54 Identities=15% Similarity=0.362 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhhcCccEEEecCCCC-----CC--CCHHHHHHHHHHHHhhcCCceEEecCC
Q 011701 199 RAFLRSLHKQYADWSVDFVKHDCAFG-----DD--LDEGEISVVSEVFKGEHNRPIIYSLSP 253 (479)
Q Consensus 199 ~~~~~~~~~~~a~wGvdylK~D~~~~-----~~--~~~~~y~~~~~al~~~~gr~i~l~~~~ 253 (479)
++|..++++++..||||.|-+|--.+ ++ +-+...+++.+..+ ..|..|++.+.|
T Consensus 120 ~~fv~eiirlietyGFDGLDiDLEq~ai~~~dnq~v~p~alk~vk~hyk-~~Gk~f~itMAP 180 (332)
T COG3469 120 QAFVNEIIRLIETYGFDGLDIDLEQSAILAADNQTVIPAALKAVKDHYK-NQGKNFFITMAP 180 (332)
T ss_pred HHHHHHHHHHHHHhCCCccccchhhhhhhhcCCeeehHHHHHHHHHHHH-hcCCceEEEecC
Confidence 68999999999999999999996322 11 22334455666666 899999998875
No 83
>smart00632 Aamy_C Aamy_C domain.
Probab=55.91 E-value=78 Score=25.12 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=34.4
Q ss_pred CCEEEEEEeCCCCCeEEEEEhhhhcccCCCCCCCCceEEEEecC----CCcceee-ccEEEEEEcCCcEEEE
Q 011701 408 GEIYLAFFNLNNAKTAISAEIADLGKALPGWKLNPSCKGTEIWS----GKDFGVM-QKSVSTEVETHGCALF 474 (479)
Q Consensus 408 g~~~valfN~~~~~~~vtv~l~~lg~~l~~~~~~~~~~vrDlW~----g~~~g~~-~~~~~~~l~~h~~~ll 474 (479)
|+..+.++|.+...+++++.- + || .. +..|+-+ ++..-+. .|.++++||+++++++
T Consensus 16 g~~g~VaiN~~~~~~~~~~~t---~--lp----~G--~Y~d~l~g~~~g~~v~V~~~G~~~~~l~~~~~v~i 76 (81)
T smart00632 16 GSKGFVAINRSDSDLTITLQT---S--LP----AG--TYCDVISGLCTGKSVTVGSNGIATFTLPAGGAVAI 76 (81)
T ss_pred CCeEEEEEECCCCceEEEEee---c--CC----Cc--ceEEEecCcccCCEEEECCCCEEEEEECCCCeEEE
Confidence 455666779988766666631 1 23 11 2456666 5544444 4789999999995444
No 84
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=52.27 E-value=1.9e+02 Score=26.61 Aligned_cols=56 Identities=14% Similarity=0.182 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhhcCccEEEecCCCCCCCC---HHHHHHHHHHHHhhcCC-ceEEecCC
Q 011701 198 GRAFLRSLHKQYADWSVDFVKHDCAFGDDLD---EGEISVVSEVFKGEHNR-PIIYSLSP 253 (479)
Q Consensus 198 ~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~---~~~y~~~~~al~~~~gr-~i~l~~~~ 253 (479)
.++|.+++++.+.++|+|.|=+|+-+....+ .+.|..+-+.|+++.+. ..++++..
T Consensus 89 ~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~~~~~ls~a~ 148 (210)
T cd00598 89 RAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSALGAANYLLTIAV 148 (210)
T ss_pred HHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhcccCcEEEEEe
Confidence 3568899999999999999999997654333 45676666666544444 46666653
No 85
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=51.57 E-value=1e+02 Score=34.92 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=27.4
Q ss_pred eecCCchhHHHHHHHHHHHH-hhcCccEEEecCC
Q 011701 190 AVNTKLGAGRAFLRSLHKQY-ADWSVDFVKHDCA 222 (479)
Q Consensus 190 ~lD~t~p~~~~~~~~~~~~~-a~wGvdylK~D~~ 222 (479)
.|+.+||-+++++=.-.+.+ .++.||.+..|=.
T Consensus 328 tln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa 361 (697)
T COG1523 328 TLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLA 361 (697)
T ss_pred ccccCChHHHHHHHHHHHHHHHHhCCCceeecch
Confidence 58899999999985555776 5899999999954
No 86
>PLN03244 alpha-amylase; Provisional
Probab=48.59 E-value=47 Score=38.09 Aligned_cols=34 Identities=12% Similarity=-0.001 Sum_probs=29.6
Q ss_pred eeecCCchhHHHHHHHHHHHH-hhcCccEEEecCC
Q 011701 189 MAVNTKLGAGRAFLRSLHKQY-ADWSVDFVKHDCA 222 (479)
Q Consensus 189 ~~lD~t~p~~~~~~~~~~~~~-a~wGvdylK~D~~ 222 (479)
...|..+|+|++|+-+.++.+ .+.+||.+.+|..
T Consensus 499 ~~fnyg~~EVr~FLLsna~yWleEyhIDGFRfDaV 533 (872)
T PLN03244 499 RMFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSL 533 (872)
T ss_pred ceecCCCHHHHHHHHHHHHHHHHHhCcCcceeecc
Confidence 467899999999998888876 5999999999965
No 87
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=47.56 E-value=57 Score=33.01 Aligned_cols=57 Identities=14% Similarity=0.194 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHhhcCccEEEecCCCCCCC-----CHHHHHHHHHHHHhhcCCceEEecCC
Q 011701 197 AGRAFLRSLHKQYADWSVDFVKHDCAFGDDL-----DEGEISVVSEVFKGEHNRPIIYSLSP 253 (479)
Q Consensus 197 ~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~-----~~~~y~~~~~al~~~~gr~i~l~~~~ 253 (479)
..++|.+++.+.+.++|+|-|=+|+-+.... +.+++..+-+.|+++.+..+++++.+
T Consensus 94 ~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~~~~~~~lT~AP 155 (312)
T cd02871 94 QEDNFVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQLKDHYGPNFILTMAP 155 (312)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 3467899999999999999999998664221 22345555555654667778887765
No 88
>PRK13840 sucrose phosphorylase; Provisional
Probab=47.04 E-value=22 Score=38.62 Aligned_cols=34 Identities=24% Similarity=0.462 Sum_probs=31.4
Q ss_pred eeecCCchhHHHHHHHHHHHHhhcCccEEEecCC
Q 011701 189 MAVNTKLGAGRAFLRSLHKQYADWSVDFVKHDCA 222 (479)
Q Consensus 189 ~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~ 222 (479)
.-||..+|++++++...++.+.+-|||.+.+|..
T Consensus 162 pDLN~~NP~V~~~i~~il~fwl~~GVDgfRLDAv 195 (495)
T PRK13840 162 IDIDVHSAAGWEYLMSILDRFAASHVTLIRLDAA 195 (495)
T ss_pred ceeCCCCHHHHHHHHHHHHHHHHCCCCEEEEech
Confidence 5688999999999999999999999999999964
No 89
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=45.57 E-value=23 Score=33.41 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=22.6
Q ss_pred ChHHHHHHHHHcCCeEEEEeecCcc
Q 011701 119 GFTEVAKKVHDMGLKFGIHVMKGIS 143 (479)
Q Consensus 119 Gmk~la~~ih~~Glk~Giy~~pg~~ 143 (479)
....++++||++|+|+|+=+.||+.
T Consensus 100 ~~~~lv~~ir~~Gmk~G~alkPgT~ 124 (224)
T KOG3111|consen 100 KPAELVEKIREKGMKVGLALKPGTP 124 (224)
T ss_pred CHHHHHHHHHHcCCeeeEEeCCCCc
Confidence 4689999999999999999998875
No 90
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=45.55 E-value=1.9e+02 Score=28.02 Aligned_cols=56 Identities=9% Similarity=0.178 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHhhcCccEEEecCCCCCC-------CCHHHHHHHHHHHHhhcCC-ceEEecC
Q 011701 197 AGRAFLRSLHKQYADWSVDFVKHDCAFGDD-------LDEGEISVVSEVFKGEHNR-PIIYSLS 252 (479)
Q Consensus 197 ~~~~~~~~~~~~~a~wGvdylK~D~~~~~~-------~~~~~y~~~~~al~~~~gr-~i~l~~~ 252 (479)
+.++|.+++++.+..+|+|.|=+|+-+... .+.+.|..+-+.|+++.|. ..+|++.
T Consensus 88 ~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~~~~~~~kllt~~ 151 (255)
T cd06542 88 AAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRKYMGPTDKLLTID 151 (255)
T ss_pred HHHHHHHHHHHHHHHhCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 356799999999999999999999865321 1345677776777655553 4455554
No 91
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=44.76 E-value=1.2e+02 Score=30.72 Aligned_cols=92 Identities=20% Similarity=0.229 Sum_probs=54.3
Q ss_pred ChHHHHHHHHHcCCeEEEEeecCcccccccCCccccccCCC--CCCcccCccchhhhhcccCCCCCCCCCCceeecCCch
Q 011701 119 GFTEVAKKVHDMGLKFGIHVMKGISNQAVNANTLIYDYDKK--GPYTEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLG 196 (479)
Q Consensus 119 Gmk~la~~ih~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~--~~~~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p 196 (479)
.|+.++++++++| ||. ++.|.+.+++-++...+- ..|. .|.+|..=--. ...-...+--+||+-.|
T Consensus 125 Di~~~iKkaKe~g----iY~---IARiVvFKD~~l~~~n~fk~av~~-~gKpw~~~~ng----aLrKe~~~ehWVd~y~~ 192 (400)
T COG1306 125 DIEPVIKKAKENG----IYA---IARIVVFKDTILAKENPFKIAVYK-DGKPWKAFTNG----ALRKESDGEHWVDAYDK 192 (400)
T ss_pred ccHHHHHHHHhcC----eEE---EEEEEEeeeeeEEeecCceEEEEc-CCCcchhhhcc----cccccccceeeecccch
Confidence 4999999999876 554 456666666555433220 0111 12222110000 00000122347888888
Q ss_pred hHHHHHHHHHHHHhhcCccEEEecCC
Q 011701 197 AGRAFLRSLHKQYADWSVDFVKHDCA 222 (479)
Q Consensus 197 ~~~~~~~~~~~~~a~wGvdylK~D~~ 222 (479)
.+=+|=-.+++..++.|||=|..|+.
T Consensus 193 ~~WeYNvtIAKEa~~fGfdEiQFDYI 218 (400)
T COG1306 193 NLWEYNVTIAKEAAKFGFDEIQFDYI 218 (400)
T ss_pred hhhhhhHHHHHHHHHcCccceeeeEE
Confidence 88788788899999999999999975
No 92
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=44.23 E-value=72 Score=34.08 Aligned_cols=67 Identities=16% Similarity=0.278 Sum_probs=42.9
Q ss_pred CCC-CCEEEEEEeCCCCC-eEEEEEhhhhcccCCCCCCCCceEEEEecCCCc--------------------ceeeccEE
Q 011701 405 GRQ-GEIYLAFFNLNNAK-TAISAEIADLGKALPGWKLNPSCKGTEIWSGKD--------------------FGVMQKSV 462 (479)
Q Consensus 405 l~~-g~~~valfN~~~~~-~~vtv~l~~lg~~l~~~~~~~~~~vrDlW~g~~--------------------~g~~~~~~ 462 (479)
.++ |...|.++|+..+. ..++|++.-+... +-.-.-+-+|.+ ....++.|
T Consensus 413 ~~~~~~l~i~vvN~~~~d~~~~~i~l~G~~~a--------~~~~~~~lt~~~~~a~Nt~d~p~~V~p~~~~~~~vs~~~l 484 (501)
T COG3534 413 DEEGGELTIFVVNRALEDALKLNISLNGLKKA--------KSAEHQVLTGDDLNATNTFDAPENVVPVPGKGATVSKNEL 484 (501)
T ss_pred cccCCeEEEEEEeccccccccceEEecccccc--------ceeeEEEEecCccccccCCCCCCceecccCCCccccCCce
Confidence 444 78899999998765 7788877655420 111122222222 11223489
Q ss_pred EEEEcCCcEEEEEEEcC
Q 011701 463 STEVETHGCALFVLNCK 479 (479)
Q Consensus 463 ~~~l~~h~~~ll~lt~~ 479 (479)
+.+++|+++.|+||+.+
T Consensus 485 ~~~~~~~S~~virl~~~ 501 (501)
T COG3534 485 TLDLPPLSVSVIRLKLK 501 (501)
T ss_pred eEecCCceEEEEEEecC
Confidence 99999999999999753
No 93
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=43.67 E-value=2.6e+02 Score=28.14 Aligned_cols=32 Identities=16% Similarity=0.190 Sum_probs=26.3
Q ss_pred ccCCHHHHHHHHHHH---HhccccCCceEEEeccc
Q 011701 48 WIISEQDFLQSADIV---AKRLLPHGYEYVVVDYL 79 (479)
Q Consensus 48 ~~i~e~~i~~~ad~l---~~gl~~~Gy~yi~iDdg 79 (479)
..+|+++|.+..+.+ ++..+++||+-|.|-.+
T Consensus 129 ~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~ 163 (327)
T cd02803 129 REMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGA 163 (327)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcch
Confidence 468999999999865 35678899999999864
No 94
>KOG3340 consensus Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=43.37 E-value=32 Score=35.12 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=21.1
Q ss_pred hHHHHHHHHHcCCeEEEEeecCc
Q 011701 120 FTEVAKKVHDMGLKFGIHVMKGI 142 (479)
Q Consensus 120 mk~la~~ih~~Glk~Giy~~pg~ 142 (479)
.+.|++.|+..+++||||.+++.
T Consensus 152 V~EL~~A~rk~dirfGLY~SlfE 174 (454)
T KOG3340|consen 152 VGELASAIRKRDIRFGLYYSLFE 174 (454)
T ss_pred HHHHHHHHHhcCcceeEeecHHH
Confidence 68999999999999999998764
No 95
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=43.21 E-value=1e+02 Score=34.99 Aligned_cols=34 Identities=15% Similarity=0.091 Sum_probs=29.5
Q ss_pred eecCCchhHHHHHHHHHHHHh-hcCccEEEecCCC
Q 011701 190 AVNTKLGAGRAFLRSLHKQYA-DWSVDFVKHDCAF 223 (479)
Q Consensus 190 ~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~~ 223 (479)
.+|.+||++++|+-..++.+. +.|||.+.+|...
T Consensus 310 ~ln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~ 344 (688)
T TIGR02100 310 TLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFDLAT 344 (688)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHcCCcEEEEechh
Confidence 588999999999987788876 7999999999753
No 96
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=42.83 E-value=2.3e+02 Score=27.54 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=34.4
Q ss_pred hhHH-HHHHHHHHHHhhcCccEEEecCCCCCCCCHHHHHH----HHHHHHhhcCCceEEecC
Q 011701 196 GAGR-AFLRSLHKQYADWSVDFVKHDCAFGDDLDEGEISV----VSEVFKGEHNRPIIYSLS 252 (479)
Q Consensus 196 p~~~-~~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~y~~----~~~al~~~~gr~i~l~~~ 252 (479)
|+.+ .|++++++.+...|+|.|=+|+-+.... .+.|.. +++++. +.|. .++++
T Consensus 81 ~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~-~~~~~~fv~~Lr~~l~-~~~~--~lt~a 138 (253)
T cd06545 81 PAKRKALVDKIINYVVSYNLDGIDVDLEGPDVT-FGDYLVFIRALYAALK-KEGK--LLTAA 138 (253)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceeEEeeccCcc-HhHHHHHHHHHHHHHh-hcCc--EEEEE
Confidence 4444 5889999999999999999998654321 345544 455554 4343 44444
No 97
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=41.80 E-value=90 Score=33.99 Aligned_cols=84 Identities=12% Similarity=0.173 Sum_probs=46.6
Q ss_pred hhhhcccCcceehcccCCCCCCCc--cc----c--CCCeEEEEEECCCCCEEEEEEeCCCCCeEEEEEhhhhcccCCCCC
Q 011701 368 TTYGLITNPTILEIDHYSSNNKDA--GA----N--ATGVRSWIATGRQGEIYLAFFNLNNAKTAISAEIADLGKALPGWK 439 (479)
Q Consensus 368 ~~~~lL~N~eliainQd~~g~~~~--~~----~--~~~~~vw~~~l~~g~~~valfN~~~~~~~vtv~l~~lg~~l~~~~ 439 (479)
...++.+|++--.+-|.+.-.+|. .+ . ..++++-+-...||+.+|.++|.+++++.++|.+.+-.
T Consensus 403 ~~~~~~~~p~yY~~gHfSKFV~PGa~RI~st~~~~~~~l~~vAF~nPDGs~vvVv~N~~~~~~~~~v~v~~~~------- 475 (496)
T PF02055_consen 403 DTGEFYKQPEYYAMGHFSKFVRPGAVRIGSTSSSSDSGLEAVAFLNPDGSIVVVVLNRGDSDQNFSVTVKDGS------- 475 (496)
T ss_dssp GGTEEEE-HHHHHHHHHHTTS-TT-EEEEEEESSSTTTEEEEEEEETTSEEEEEEEE-SSS-EEEEEEEECTT-------
T ss_pred CCCeEEEcHHHHHHHHHhcccCCCCEEEEeeccCCCCceeEEEEECCCCCEEEEEEcCCCCccceEEEEecCC-------
Confidence 345677788777666654333331 11 1 12355444444689999999999998888666653221
Q ss_pred CCCceEEEEecCCCcceeeccEEEEEEcCCcEEEEE
Q 011701 440 LNPSCKGTEIWSGKDFGVMQKSVSTEVETHGCALFV 475 (479)
Q Consensus 440 ~~~~~~vrDlW~g~~~g~~~~~~~~~l~~h~~~ll~ 475 (479)
.....|.++||||+.+-+-
T Consensus 476 -----------------~~~~~~~~~lp~~s~~t~~ 494 (496)
T PF02055_consen 476 -----------------KGNNHFNVTLPPRSIVTTY 494 (496)
T ss_dssp -----------------TEE--EEEEEE-TTEEEEE
T ss_pred -----------------cceeEEEEEeCCCceEEEE
Confidence 1123578999999886543
No 98
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=41.33 E-value=63 Score=31.76 Aligned_cols=62 Identities=6% Similarity=0.074 Sum_probs=41.7
Q ss_pred eecCCchhHHHHHHHHHHHHhhcCccEEEecCCCCCC--C----CHHHHHHHHHHHHhhcC-CceEEecC
Q 011701 190 AVNTKLGAGRAFLRSLHKQYADWSVDFVKHDCAFGDD--L----DEGEISVVSEVFKGEHN-RPIIYSLS 252 (479)
Q Consensus 190 ~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~--~----~~~~y~~~~~al~~~~g-r~i~l~~~ 252 (479)
+||.|||-++.--++..+.-.+-|+.|+.+-=-.... . ..+.+....+++. ..+ ..+++..-
T Consensus 70 vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l~-~~~~~~iflttG 138 (249)
T PF02571_consen 70 VIDATHPFAAEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELLK-ELGGGRIFLTTG 138 (249)
T ss_pred EEECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHHh-hcCCCCEEEeCc
Confidence 6899999888777777777889999999997322111 1 1234566666665 445 66777653
No 99
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=40.75 E-value=1e+02 Score=32.19 Aligned_cols=80 Identities=9% Similarity=0.130 Sum_probs=50.7
Q ss_pred ccCCHHHHHHHHHHH---HhccccCCceEEEecc---cccccccc-CccCCCCcccccCCCCCceeCCCCCCCCCCCCCh
Q 011701 48 WIISEQDFLQSADIV---AKRLLPHGYEYVVVDY---LWYRKKVK-DAHIDSEGIDLIDEWGRMVPDPDRWPSSKGGKGF 120 (479)
Q Consensus 48 ~~i~e~~i~~~ad~l---~~gl~~~Gy~yi~iDd---gW~~~~~~-g~~~~~~~~~~~d~~G~~~~d~~~FP~~~~~~Gm 120 (479)
..+|+++|.+..+.+ ++..+++||+-|.|=. ||--..=- ..+| --.|+||--..|..||+
T Consensus 138 ~~mt~~eI~~ii~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N-----~RtDeyGGslenR~rf~-------- 204 (382)
T cd02931 138 RELTTEEVETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFN-----KRTDKYGGSLENRLRFA-------- 204 (382)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccC-----CCCCcCCCCHHHHhHHH--------
Confidence 568999999999854 3567789999999986 77311000 0000 01356776555556776
Q ss_pred HHHHHHHHHc---CCeEEEEeec
Q 011701 121 TEVAKKVHDM---GLKFGIHVMK 140 (479)
Q Consensus 121 k~la~~ih~~---Glk~Giy~~p 140 (479)
..+++.|++. ++.+|+=+.+
T Consensus 205 ~eii~~vr~~~g~~f~v~vri~~ 227 (382)
T cd02931 205 IEIVEEIKARCGEDFPVSLRYSV 227 (382)
T ss_pred HHHHHHHHHhcCCCceEEEEEec
Confidence 5777777763 5667776553
No 100
>PRK06852 aldolase; Validated
Probab=39.91 E-value=1.8e+02 Score=29.58 Aligned_cols=48 Identities=13% Similarity=0.099 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhcCccEEEecCCCCCC-CCHHHHHHHHHHHHhhc-CCceEEec
Q 011701 200 AFLRSLHKQYADWSVDFVKHDCAFGDD-LDEGEISVVSEVFKGEH-NRPIIYSL 251 (479)
Q Consensus 200 ~~~~~~~~~~a~wGvdylK~D~~~~~~-~~~~~y~~~~~al~~~~-gr~i~l~~ 251 (479)
+++...++.-++.|.|+||..++.... -++ ..+++++. .+ ..|+++.-
T Consensus 188 ~~ia~aaRiaaELGADIVKv~y~~~~~~g~~---e~f~~vv~-~~g~vpVviaG 237 (304)
T PRK06852 188 HLIAGAAGVAACLGADFVKVNYPKKEGANPA---ELFKEAVL-AAGRTKVVCAG 237 (304)
T ss_pred HHHHHHHHHHHHHcCCEEEecCCCcCCCCCH---HHHHHHHH-hCCCCcEEEeC
Confidence 366666777899999999999984211 123 34555666 77 45666543
No 101
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=39.79 E-value=33 Score=37.01 Aligned_cols=34 Identities=12% Similarity=0.297 Sum_probs=31.3
Q ss_pred eeecCCchhHHHHHHHHHHHHhhcCccEEEecCC
Q 011701 189 MAVNTKLGAGRAFLRSLHKQYADWSVDFVKHDCA 222 (479)
Q Consensus 189 ~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~ 222 (479)
.-||..+|.+++++..+++.+.+-|||.+.+|..
T Consensus 158 pDLN~~np~v~e~i~~il~fwl~~GvdgfRLDAv 191 (470)
T TIGR03852 158 IDLDVTSETTKRFIRDNLENLAEHGASIIRLDAF 191 (470)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 4688999999999999999999999999999965
No 102
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=39.25 E-value=61 Score=34.36 Aligned_cols=52 Identities=13% Similarity=0.099 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhcCccEEEec-CCCCCCCCH--HHHHHHHHHHH---hhcCCceEEecC
Q 011701 201 FLRSLHKQYADWSVDFVKHD-CAFGDDLDE--GEISVVSEVFK---GEHNRPIIYSLS 252 (479)
Q Consensus 201 ~~~~~~~~~a~wGvdylK~D-~~~~~~~~~--~~y~~~~~al~---~~~gr~i~l~~~ 252 (479)
-+...+..++.=|+||||=| .+..+.+.+ ++..+..++++ +++|+..+|..+
T Consensus 161 ~~a~~~~~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~ya~N 218 (412)
T TIGR03326 161 EHAKVAYELWSGGVDLLKDDENLTSQPFNRFEERVEKLYKVRDKVEAETGERKEYLAN 218 (412)
T ss_pred HHHHHHHHHHhcCCceeecCCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCcceEEEE
Confidence 44555778889999999999 444444443 45655555543 289998766544
No 103
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=39.01 E-value=80 Score=33.15 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=19.4
Q ss_pred hHHHHHHHHHcCCeEEEEeec
Q 011701 120 FTEVAKKVHDMGLKFGIHVMK 140 (479)
Q Consensus 120 mk~la~~ih~~Glk~Giy~~p 140 (479)
+..+++.+++.||.||||...
T Consensus 103 vgela~Avr~qGL~FGvy~s~ 123 (430)
T COG3669 103 VGELAKAVREQGLRFGVYLSG 123 (430)
T ss_pred HHHHHHHHHHcCCeeeEeecc
Confidence 789999999999999999984
No 104
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=38.51 E-value=55 Score=34.48 Aligned_cols=52 Identities=23% Similarity=0.337 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhcCccEEEec-CCCCCCCCH--HHHHHHHHHHH---hhcCCceEEecC
Q 011701 201 FLRSLHKQYADWSVDFVKHD-CAFGDDLDE--GEISVVSEVFK---GEHNRPIIYSLS 252 (479)
Q Consensus 201 ~~~~~~~~~a~wGvdylK~D-~~~~~~~~~--~~y~~~~~al~---~~~gr~i~l~~~ 252 (479)
-+...+..++.=|+||||=| .+..+.+.+ +++.+..++++ +++|+..+|..+
T Consensus 141 ~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~a~~~a~~~a~~eTG~~~~ya~N 198 (391)
T cd08209 141 DLAEQLREQALGGVDLIKDDEILFDNPLAPALERIRACRPVLQEVYEQTGRRTLYAVN 198 (391)
T ss_pred HHHHHHHHHHhCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEE
Confidence 44555677888899999999 444444443 56666655554 379998766544
No 105
>COG5510 Predicted small secreted protein [Function unknown]
Probab=38.29 E-value=32 Score=24.31 Aligned_cols=23 Identities=17% Similarity=0.005 Sum_probs=16.8
Q ss_pred CcchhhHHHHHHHHHHHHHhhhc
Q 011701 1 MKLFALSNLCFFSSLFLYRIASA 23 (479)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (479)
||++.++..++++..|+.+.-|.
T Consensus 2 mk~t~l~i~~vll~s~llaaCNT 24 (44)
T COG5510 2 MKKTILLIALVLLASTLLAACNT 24 (44)
T ss_pred chHHHHHHHHHHHHHHHHHHhhh
Confidence 89998888887777777554443
No 106
>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria. It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....
Probab=37.58 E-value=67 Score=32.69 Aligned_cols=51 Identities=22% Similarity=0.253 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhcCccEEEecC-CCCCCCCH--HHHHHHHHHHH---hhcCCceEEec
Q 011701 201 FLRSLHKQYADWSVDFVKHDC-AFGDDLDE--GEISVVSEVFK---GEHNRPIIYSL 251 (479)
Q Consensus 201 ~~~~~~~~~a~wGvdylK~D~-~~~~~~~~--~~y~~~~~al~---~~~gr~i~l~~ 251 (479)
-+..++..++.=|+|+||=|= +..+.+.+ +++....+|++ +++|++.+|..
T Consensus 31 ~~a~~~y~~a~GG~D~IKDDE~l~~q~f~p~~eRv~~~~~a~~~a~~eTG~~~ly~~ 87 (309)
T PF00016_consen 31 ELAELAYEFALGGVDFIKDDENLANQPFCPFEERVPACMEAVDRAEEETGEKKLYAA 87 (309)
T ss_dssp HHHHHHHHHHHTTSSEEEE-TT-SSBTTBEHHHHHHHHHHHHHHHHHHHSS--EEEE
T ss_pred chhhHHHhhhhcccceecccccccCcccccHhHhHHhhhhhhhccccccceecceec
Confidence 344456677788999999994 44444443 46665555554 28998866544
No 107
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=37.44 E-value=1.9e+02 Score=35.26 Aligned_cols=34 Identities=18% Similarity=-0.004 Sum_probs=29.3
Q ss_pred eecCCchhHHHHHHHHHHHHhhcCccEEEecCCC
Q 011701 190 AVNTKLGAGRAFLRSLHKQYADWSVDFVKHDCAF 223 (479)
Q Consensus 190 ~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~ 223 (479)
.+|..||.+++++...++.+.+.|||.+.+|-..
T Consensus 312 ~~n~~~p~v~~~i~d~lr~Wv~~gVDGfRfDla~ 345 (1221)
T PRK14510 312 LPNLERPFILRLPMDVLRSWAKRGVDGFRLDLAD 345 (1221)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCCEEEEechh
Confidence 3577899999999888899888999999999643
No 108
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=37.25 E-value=1.2e+02 Score=32.29 Aligned_cols=66 Identities=15% Similarity=0.241 Sum_probs=42.0
Q ss_pred CceeecCCchhHHHHHHHHHHHHhhcCccEEEecCCCCC----------CCCHHHHHH----HHHHHHh---hcCCceEE
Q 011701 187 GFMAVNTKLGAGRAFLRSLHKQYADWSVDFVKHDCAFGD----------DLDEGEISV----VSEVFKG---EHNRPIIY 249 (479)
Q Consensus 187 ~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~----------~~~~~~y~~----~~~al~~---~~gr~i~l 249 (479)
+|+-+-.++-.-+.|.++.++.++.|+||.|-+|+-|+. ..+.++|.. +|++|.+ .-||...|
T Consensus 141 ~F~~~aad~a~re~Fa~saVe~~r~~~FDGVDIDWEYP~~~~~~~~~~~~~d~~ny~~Ll~eLR~~LD~a~~edgr~Y~L 220 (441)
T COG3325 141 GFSDMAADDASRENFAKSAVEFMRTYGFDGVDIDWEYPGSGGDAGNCGRPKDKANYVLLLQELRKKLDKAGVEDGRHYQL 220 (441)
T ss_pred CcchhhcCHHHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCCCCCCcccHHHHHHHHHHHHHHHhhcccccCceEEE
Confidence 444333333344568899999999999999999987642 123456654 4555551 34566666
Q ss_pred ecC
Q 011701 250 SLS 252 (479)
Q Consensus 250 ~~~ 252 (479)
++-
T Consensus 221 TiA 223 (441)
T COG3325 221 TIA 223 (441)
T ss_pred EEe
Confidence 654
No 109
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=37.00 E-value=60 Score=33.84 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhcCccEEEec-CCCCCCCCH--HHHHHHHHHHH---hhcCCceEEecC
Q 011701 201 FLRSLHKQYADWSVDFVKHD-CAFGDDLDE--GEISVVSEVFK---GEHNRPIIYSLS 252 (479)
Q Consensus 201 ~~~~~~~~~a~wGvdylK~D-~~~~~~~~~--~~y~~~~~al~---~~~gr~i~l~~~ 252 (479)
-+...+..++.=|+||||=| .+..+.+.+ +++.+..++++ +++|+..+|..+
T Consensus 144 ~~a~~~y~~~~GG~D~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~N 201 (366)
T cd08148 144 YTAEAAYAAALGGLDLIKDDETLTDQPFCPLRDRITEVAAALDRVQEETGEKKLYAVN 201 (366)
T ss_pred HHHHHHHHHHhCCCCccccccccCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEE
Confidence 44555777888999999999 444444443 46655555554 289998777554
No 110
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=36.98 E-value=1e+02 Score=30.19 Aligned_cols=16 Identities=19% Similarity=0.505 Sum_probs=13.5
Q ss_pred ChHHHHHHHHHcCCeE
Q 011701 119 GFTEVAKKVHDMGLKF 134 (479)
Q Consensus 119 Gmk~la~~ih~~Glk~ 134 (479)
-.+.|.++++++|+.|
T Consensus 57 ~~~~L~~~~~~~gi~f 72 (241)
T PF03102_consen 57 QHKELFEYCKELGIDF 72 (241)
T ss_dssp HHHHHHHHHHHTT-EE
T ss_pred HHHHHHHHHHHcCCEE
Confidence 4789999999999987
No 111
>PF11714 Inhibitor_I53: Thrombin inhibitor Madanin ; InterPro: IPR021716 Members of this family are the peptidase inhibitor madanin proteins. These proteins were isolated from tick saliva [].
Probab=36.74 E-value=28 Score=27.05 Aligned_cols=20 Identities=30% Similarity=0.336 Sum_probs=16.2
Q ss_pred CcchhhHHHHHHHHHHHHHh
Q 011701 1 MKLFALSNLCFFSSLFLYRI 20 (479)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (479)
||+|+++++.+.+|.++-+.
T Consensus 1 MKhFaiLilavVaSAvVMAy 20 (78)
T PF11714_consen 1 MKHFAILILAVVASAVVMAY 20 (78)
T ss_pred CchHHHHHHHHHHHHHHHhc
Confidence 99999998888888777443
No 112
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=36.14 E-value=68 Score=32.26 Aligned_cols=54 Identities=19% Similarity=0.308 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhhcCccEEEecCCCCCC-CCHHHHH----HHHHHHHh---hcCC-ceEEecC
Q 011701 199 RAFLRSLHKQYADWSVDFVKHDCAFGDD-LDEGEIS----VVSEVFKG---EHNR-PIIYSLS 252 (479)
Q Consensus 199 ~~~~~~~~~~~a~wGvdylK~D~~~~~~-~~~~~y~----~~~~al~~---~~gr-~i~l~~~ 252 (479)
+.|++++++.+.++|+|.|-+|+-+... -+.+.|. ++++++.+ ..|+ .+++++.
T Consensus 94 ~~fi~siv~~l~~~~fDGidiDWE~P~~~~d~~n~~~ll~elr~~l~~~~~~~~~~~~~ls~a 156 (299)
T cd02879 94 KAFINSSIKVARKYGFDGLDLDWEFPSSQVEMENFGKLLEEWRAAVKDEARSSGRPPLLLTAA 156 (299)
T ss_pred HHHHHHHHHHHHHhCCCceeecccCCCChhHHHHHHHHHHHHHHHHHHHhhccCCCcEEEEee
Confidence 4689999999999999999999977532 2344554 44555541 1333 4666665
No 113
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=36.10 E-value=60 Score=34.38 Aligned_cols=52 Identities=21% Similarity=0.341 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhcCccEEEec-CCCCCCCCH--HHHHHHHHHHH---hhcCCceEEecC
Q 011701 201 FLRSLHKQYADWSVDFVKHD-CAFGDDLDE--GEISVVSEVFK---GEHNRPIIYSLS 252 (479)
Q Consensus 201 ~~~~~~~~~a~wGvdylK~D-~~~~~~~~~--~~y~~~~~al~---~~~gr~i~l~~~ 252 (479)
-+...+..++.=|+||||=| .+..+.+.+ ++..+..++++ +.+|+..+|..+
T Consensus 160 ~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~N 217 (406)
T cd08207 160 ETAALVRQLAAAGIDFIKDDELLANPPYSPLDERVRAVMRVINDHAQRTGRKVMYAFN 217 (406)
T ss_pred HHHHHHHHHHhCCCCcccccccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEe
Confidence 34445677788899999999 444444443 45554444443 289998776554
No 114
>PRK12313 glycogen branching enzyme; Provisional
Probab=36.00 E-value=1.5e+02 Score=33.30 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=41.3
Q ss_pred eEEEEEEC-CCCCEEEEEEeCCCCCeE-EEEEhhhhcccCCCCCCCCceEEEEecCCCcc---ee---------------
Q 011701 398 VRSWIATG-RQGEIYLAFFNLNNAKTA-ISAEIADLGKALPGWKLNPSCKGTEIWSGKDF---GV--------------- 457 (479)
Q Consensus 398 ~~vw~~~l-~~g~~~valfN~~~~~~~-vtv~l~~lg~~l~~~~~~~~~~vrDlW~g~~~---g~--------------- 457 (479)
.-++.+.. ..++.+|+++|.++.+.+ +.|.+..- ...+++++..+. |.
T Consensus 539 vlaf~R~~~~~~~~llvv~N~s~~~~~~y~i~~p~~------------g~~~~ilnsd~~~ygG~~~~~~~~~~~~~~~~ 606 (633)
T PRK12313 539 VLSFIRKGKNKGDFLVVVFNFTPVEREDYRIGVPVA------------GIYEEILNTDSEEFGGSGKGNNGTVKAQEGPW 606 (633)
T ss_pred EEEEEEeCCCCCceEEEEEeCCCCcccceeECCCCC------------CeEEEEEcCCchhcCCCCcCCCCceeeccccc
Confidence 45666654 245678899999886543 44433211 134444432221 00
Q ss_pred --eccEEEEEEcCCcEEEEEEEcC
Q 011701 458 --MQKSVSTEVETHGCALFVLNCK 479 (479)
Q Consensus 458 --~~~~~~~~l~~h~~~ll~lt~~ 479 (479)
...++.+.|||.++++|+.+++
T Consensus 607 ~g~~~~~~i~ip~~s~~v~~~~~~ 630 (633)
T PRK12313 607 HGRPQSLTLTLPPLGALVLKPKRR 630 (633)
T ss_pred CCCCCEEEEEeCCCEEEEEEEccc
Confidence 1236789999999999998763
No 115
>PRK06769 hypothetical protein; Validated
Probab=35.51 E-value=71 Score=29.17 Aligned_cols=21 Identities=10% Similarity=-0.134 Sum_probs=19.5
Q ss_pred ChHHHHHHHHHcCCeEEEEee
Q 011701 119 GFTEVAKKVHDMGLKFGIHVM 139 (479)
Q Consensus 119 Gmk~la~~ih~~Glk~Giy~~ 139 (479)
|++.+.++||++|++++|=++
T Consensus 32 gv~e~L~~Lk~~G~~l~I~Tn 52 (173)
T PRK06769 32 FTKASLQKLKANHIKIFSFTN 52 (173)
T ss_pred CHHHHHHHHHHCCCEEEEEEC
Confidence 799999999999999999874
No 116
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=35.32 E-value=1.4e+02 Score=30.75 Aligned_cols=74 Identities=14% Similarity=0.158 Sum_probs=47.0
Q ss_pred CccCCHHHHHHHHHHH---HhccccCCceEEEecccc--------ccccccCccCCCCcccccCCCCCceeCCCCCCCCC
Q 011701 47 CWIISEQDFLQSADIV---AKRLLPHGYEYVVVDYLW--------YRKKVKDAHIDSEGIDLIDEWGRMVPDPDRWPSSK 115 (479)
Q Consensus 47 ~~~i~e~~i~~~ad~l---~~gl~~~Gy~yi~iDdgW--------~~~~~~g~~~~~~~~~~~d~~G~~~~d~~~FP~~~ 115 (479)
-..+|+++|.+..+.+ ++..+++||+-|.|=.+= ....+. -.|+||--..|..||+
T Consensus 129 p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~----------RtD~yGGslenR~Rf~--- 195 (337)
T PRK13523 129 PVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNK----------RTDEYGGSPENRYRFL--- 195 (337)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCC----------cCCCCCCCHHHHHHHH---
Confidence 3569999999999864 356788999999997652 211100 0256665444556666
Q ss_pred CCCChHHHHHHHHHc-CCeEEEEe
Q 011701 116 GGKGFTEVAKKVHDM-GLKFGIHV 138 (479)
Q Consensus 116 ~~~Gmk~la~~ih~~-Glk~Giy~ 138 (479)
..+++.|++. .+.+|+=+
T Consensus 196 -----~eii~~ir~~~~~~v~vRi 214 (337)
T PRK13523 196 -----REIIDAVKEVWDGPLFVRI 214 (337)
T ss_pred -----HHHHHHHHHhcCCCeEEEe
Confidence 5677777775 34445443
No 117
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=35.14 E-value=70 Score=33.88 Aligned_cols=52 Identities=27% Similarity=0.380 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhcCccEEEecC-CCCCCCCH--HHHHHHHHHHH---hhcCCceEEecC
Q 011701 201 FLRSLHKQYADWSVDFVKHDC-AFGDDLDE--GEISVVSEVFK---GEHNRPIIYSLS 252 (479)
Q Consensus 201 ~~~~~~~~~a~wGvdylK~D~-~~~~~~~~--~~y~~~~~al~---~~~gr~i~l~~~ 252 (479)
-+..++..++.=|+|+||=|= +..+.+.+ +++.+..++++ +++|+..+|..+
T Consensus 156 ~~A~~~y~~~~GGvD~IKDDE~l~dq~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~N 213 (407)
T TIGR03332 156 YLKEQLRQQALGGVDLVKDDEILFETGLAPFEKRITEGKEVLQEVYEQTGHKTLYAVN 213 (407)
T ss_pred HHHHHHHHHhccCcccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCcceEeec
Confidence 444556678888999999994 44444433 46655555444 289998777655
No 118
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=34.83 E-value=1e+02 Score=34.93 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=27.4
Q ss_pred ecCCchhHHHHHHHHHHHH-hhcCccEEEecCC
Q 011701 191 VNTKLGAGRAFLRSLHKQY-ADWSVDFVKHDCA 222 (479)
Q Consensus 191 lD~t~p~~~~~~~~~~~~~-a~wGvdylK~D~~ 222 (479)
.+..||.|++|+-+..+.+ .++.||.+..|..
T Consensus 372 fn~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ 404 (757)
T KOG0470|consen 372 FNYNHPVVLRFLLSNLRWWVTEYHVDGFRFDLV 404 (757)
T ss_pred ccCCCHHHHHHHHHHHHHHHHheeccceEEcch
Confidence 5678999999998777775 6999999999974
No 119
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=34.46 E-value=52 Score=30.76 Aligned_cols=22 Identities=5% Similarity=0.074 Sum_probs=19.7
Q ss_pred ChHHHHHHHHHcCC-eEEEEeec
Q 011701 119 GFTEVAKKVHDMGL-KFGIHVMK 140 (479)
Q Consensus 119 Gmk~la~~ih~~Gl-k~Giy~~p 140 (479)
-++++.+.|++.|. +++||+.+
T Consensus 110 ~~~~F~~~v~~~g~~~~~iY~~~ 132 (192)
T cd06522 110 NVNAFWQTMKAAGYKNTDVYTSA 132 (192)
T ss_pred HHHHHHHHHHHcCCCCcEEEccH
Confidence 47999999999998 89999875
No 120
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=33.73 E-value=34 Score=31.92 Aligned_cols=24 Identities=13% Similarity=0.025 Sum_probs=20.7
Q ss_pred ChHHHHHHHHHcCCeEEEEeecCc
Q 011701 119 GFTEVAKKVHDMGLKFGIHVMKGI 142 (479)
Q Consensus 119 Gmk~la~~ih~~Glk~Giy~~pg~ 142 (479)
-++.+++.|++.|.+++||+.+..
T Consensus 114 ~~~~f~~~v~~~G~~~~iY~~~~~ 137 (191)
T cd06414 114 IANAFCETIEAAGYYPGIYANLSW 137 (191)
T ss_pred HHHHHHHHHHHcCCCeEEEecHHH
Confidence 478999999999999999987643
No 121
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=33.42 E-value=1.1e+02 Score=31.82 Aligned_cols=57 Identities=12% Similarity=0.028 Sum_probs=38.1
Q ss_pred chhHH-HHHHHHHHHHhhcCccEEEecCCCCCC---CCHHHHH----HHHHHHHhhcCCceEEecC
Q 011701 195 LGAGR-AFLRSLHKQYADWSVDFVKHDCAFGDD---LDEGEIS----VVSEVFKGEHNRPIIYSLS 252 (479)
Q Consensus 195 ~p~~~-~~~~~~~~~~a~wGvdylK~D~~~~~~---~~~~~y~----~~~~al~~~~gr~i~l~~~ 252 (479)
.|+.+ .|+++.++.+.+.|+|.|-+|+-+... .+.+.|. .++++|. +.++...++++
T Consensus 93 ~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~~l~-~~~~~~~Lsva 157 (358)
T cd02875 93 NPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTKAFK-KENPGYQISFD 157 (358)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHHHHh-hcCCCcEEEEE
Confidence 35555 488999999999999999999976532 2344564 4455555 44444555553
No 122
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=33.42 E-value=75 Score=33.72 Aligned_cols=52 Identities=19% Similarity=0.127 Sum_probs=33.9
Q ss_pred HHHHHHHHhhcCccEEEecC-CCCCCCCH--HHHHHHHHHHH---hhcCCceEEecCC
Q 011701 202 LRSLHKQYADWSVDFVKHDC-AFGDDLDE--GEISVVSEVFK---GEHNRPIIYSLSP 253 (479)
Q Consensus 202 ~~~~~~~~a~wGvdylK~D~-~~~~~~~~--~~y~~~~~al~---~~~gr~i~l~~~~ 253 (479)
+...+..++.=|+||||=|= +..+.+.+ +++.+..++++ +++|+..+|..+.
T Consensus 150 ~a~~~y~~~~GGiD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~Ni 207 (414)
T cd08206 150 YARVVYEALRGGLDFVKDDENQNSQPFMRFEDRILFVAEAMDKAEAETGEAKGHYLNI 207 (414)
T ss_pred HHHHHHHHHhcCCcccccCccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEecc
Confidence 34456677888999999994 44444443 45655554444 2899987776653
No 123
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=33.29 E-value=77 Score=33.55 Aligned_cols=52 Identities=25% Similarity=0.379 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhcCccEEEec-CCCCCCCCH--HHHHHHHHHHH---hhcCCceEEecC
Q 011701 201 FLRSLHKQYADWSVDFVKHD-CAFGDDLDE--GEISVVSEVFK---GEHNRPIIYSLS 252 (479)
Q Consensus 201 ~~~~~~~~~a~wGvdylK~D-~~~~~~~~~--~~y~~~~~al~---~~~gr~i~l~~~ 252 (479)
-+...+..++.=|+||||=| .+..+.+.+ +++.+..+|++ +++|+..+|..+
T Consensus 151 ~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~N 208 (407)
T PRK09549 151 YLKEQLRDQALGGVDLVKDDEILFENALTPFEKRIVAGKEVLQEVYETTGHKTLYAVN 208 (407)
T ss_pred HHHHHHHHHHhcCCcceecCcCCCCCCCcCHHHHHHHHHHHHHHHHHhhCCcceEEEe
Confidence 34445667778899999999 444444443 46655555554 289998777655
No 124
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=33.05 E-value=31 Score=32.29 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.0
Q ss_pred ChHHHHHHHHHcCCeEEEEeecC
Q 011701 119 GFTEVAKKVHDMGLKFGIHVMKG 141 (479)
Q Consensus 119 Gmk~la~~ih~~Glk~Giy~~pg 141 (479)
-++.+++.+++.|.++|||+.+.
T Consensus 111 ~~~~f~~~~~~~G~~~~iYt~~~ 133 (196)
T cd06416 111 FLQELVSAAKALGLKVGIYSSQY 133 (196)
T ss_pred HHHHHHHHHHHhCCeEEEEcCcc
Confidence 47889999999999999999764
No 125
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=32.16 E-value=94 Score=30.11 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=18.0
Q ss_pred hHHHHHHHHHcCCeEEEEeec
Q 011701 120 FTEVAKKVHDMGLKFGIHVMK 140 (479)
Q Consensus 120 mk~la~~ih~~Glk~Giy~~p 140 (479)
|+.+++.+|++|+++-+|..|
T Consensus 187 l~~~v~~a~~~Gl~vr~Wtv~ 207 (228)
T cd08577 187 LKSIIDKAHARGKKVRFWGTP 207 (228)
T ss_pred HHHHHHHHHHCCCEEEEEccC
Confidence 678889999999999999743
No 126
>PRK05402 glycogen branching enzyme; Provisional
Probab=31.68 E-value=1.8e+02 Score=33.32 Aligned_cols=68 Identities=16% Similarity=0.213 Sum_probs=41.1
Q ss_pred eEEEEEECCC-CCEEEEEEeCCCCCe-EEEEEhhhhcccCCCCCCCCceEEEEecCCCcce---e---------------
Q 011701 398 VRSWIATGRQ-GEIYLAFFNLNNAKT-AISAEIADLGKALPGWKLNPSCKGTEIWSGKDFG---V--------------- 457 (479)
Q Consensus 398 ~~vw~~~l~~-g~~~valfN~~~~~~-~vtv~l~~lg~~l~~~~~~~~~~vrDlW~g~~~g---~--------------- 457 (479)
+-++.+...+ ++.+|+++|.++.+. .++|.+..-| +.+++++.++.. .
T Consensus 635 vlaf~R~~~~~~~~vlvv~N~~~~~~~~y~i~~p~~g------------~~~~ilnsd~~~~gg~~~~~~~~~~~~~~~~ 702 (726)
T PRK05402 635 VLSFLRRGKDDGEPLLVVCNFTPVPRHDYRLGVPQAG------------RWREVLNTDAEHYGGSNVGNGGGVHAEEVPW 702 (726)
T ss_pred EEEEEEecCCCCCeEEEEEeCCCCcccceEECCCCCC------------eEEEEEcCcchhhCCCCCCCCCceecccccc
Confidence 4455555443 577899999987654 3455443221 345555443210 0
Q ss_pred --eccEEEEEEcCCcEEEEEEE
Q 011701 458 --MQKSVSTEVETHGCALFVLN 477 (479)
Q Consensus 458 --~~~~~~~~l~~h~~~ll~lt 477 (479)
...++++.|||-++++|+..
T Consensus 703 ~g~~~~~~i~lp~~~~~v~~~~ 724 (726)
T PRK05402 703 HGRPHSLSLTLPPLATLILKPE 724 (726)
T ss_pred CCCCCEEEEEeCCCEEEEEEEc
Confidence 11367889999999999875
No 127
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=31.62 E-value=85 Score=33.29 Aligned_cols=52 Identities=13% Similarity=0.034 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhcCccEEEec-CCCCCCCCH--HHHHHHHHHHH---hhcCCceEEecC
Q 011701 201 FLRSLHKQYADWSVDFVKHD-CAFGDDLDE--GEISVVSEVFK---GEHNRPIIYSLS 252 (479)
Q Consensus 201 ~~~~~~~~~a~wGvdylK~D-~~~~~~~~~--~~y~~~~~al~---~~~gr~i~l~~~ 252 (479)
-+...+..++.=|+||||=| .+..+.+.+ +++.+..++++ +++|+..+|..+
T Consensus 148 ~~a~~~y~~~~GGvD~iKDDE~l~~q~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~N 205 (412)
T cd08213 148 EHAEVAYEALVGGVDLVKDDENLTSQPFNRFEERAKESLKARDKAEAETGERKAYLAN 205 (412)
T ss_pred HHHHHHHHHHhcCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEE
Confidence 34455677888999999999 444444443 46655555544 289998776554
No 128
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=31.52 E-value=1.1e+02 Score=30.79 Aligned_cols=45 Identities=11% Similarity=0.048 Sum_probs=31.6
Q ss_pred hhHH-HHHHHHHHHHhhcCccEEEecCCCCCCCCHHHHHHHHHHHH
Q 011701 196 GAGR-AFLRSLHKQYADWSVDFVKHDCAFGDDLDEGEISVVSEVFK 240 (479)
Q Consensus 196 p~~~-~~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~y~~~~~al~ 240 (479)
|+.+ .|++++++.+..+|+|.|-+|+-+...-+.+.|..+-+.|+
T Consensus 85 ~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~~~d~~~~~~fl~~lr 130 (313)
T cd02874 85 PEARQRLINNILALAKKYGYDGVNIDFENVPPEDREAYTQFLRELS 130 (313)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcEEEecccCCHHHHHHHHHHHHHHH
Confidence 4444 58999999999999999999986643333445655444443
No 129
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=30.99 E-value=57 Score=32.82 Aligned_cols=54 Identities=15% Similarity=0.310 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhhcCccEEEecCCCCCCC----CHHHHHH----HHHHHHhhcC---CceEEecC
Q 011701 198 GRAFLRSLHKQYADWSVDFVKHDCAFGDDL----DEGEISV----VSEVFKGEHN---RPIIYSLS 252 (479)
Q Consensus 198 ~~~~~~~~~~~~a~wGvdylK~D~~~~~~~----~~~~y~~----~~~al~~~~g---r~i~l~~~ 252 (479)
.+.|++++++.+.+.|+|.|-+|+-+.... +.+.|.. ++++|. +.+ +.+.|++.
T Consensus 100 r~~f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~l~-~~~~~~~~~~ls~a 164 (343)
T PF00704_consen 100 RQNFINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKALK-RANRSGKGYILSVA 164 (343)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHHHH-HHHHHHSTSEEEEE
T ss_pred HHHHHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhhhc-ccccccceeEEeec
Confidence 356899999999999999999999775443 3455654 444554 221 36777665
No 130
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=30.21 E-value=1.2e+02 Score=31.71 Aligned_cols=52 Identities=17% Similarity=0.246 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhcCccEEEecCCC-CCCC-CH-HHHHHHHHHHH---hhcCCceEEecC
Q 011701 201 FLRSLHKQYADWSVDFVKHDCAF-GDDL-DE-GEISVVSEVFK---GEHNRPIIYSLS 252 (479)
Q Consensus 201 ~~~~~~~~~a~wGvdylK~D~~~-~~~~-~~-~~y~~~~~al~---~~~gr~i~l~~~ 252 (479)
-+...+..++.=|||+||-|-.. ...+ .. ++.....+|++ +.+|+...|..+
T Consensus 142 ~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~y~~N 199 (364)
T cd08210 142 ELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGRTLYAPN 199 (364)
T ss_pred HHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcceEEEe
Confidence 44555777888999999999643 3333 22 46666666665 267776555443
No 131
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=30.02 E-value=1.1e+02 Score=31.11 Aligned_cols=53 Identities=13% Similarity=0.236 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhhcCccEEEecCCCCCC----------CCHHHHH----HHHHHHHhh----cCCceEEecC
Q 011701 199 RAFLRSLHKQYADWSVDFVKHDCAFGDD----------LDEGEIS----VVSEVFKGE----HNRPIIYSLS 252 (479)
Q Consensus 199 ~~~~~~~~~~~a~wGvdylK~D~~~~~~----------~~~~~y~----~~~~al~~~----~gr~i~l~~~ 252 (479)
+.|++++++.+.+.|+|.|=+|+-+... .+.+.|. .++++|. + .+++.+|++.
T Consensus 111 ~~Fi~siv~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d~~~~~~ll~~Lr~~l~-~~~~~~~~~~~Ls~a 181 (322)
T cd06548 111 AKFADSAVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKENFTLLLKELREALD-ALGAETGRKYLLTIA 181 (322)
T ss_pred HHHHHHHHHHHHhcCCCeEEECCcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHH-HhhhccCCceEEEEE
Confidence 4589999999999999999999876422 2234454 4566665 3 3567777775
No 132
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=29.61 E-value=1.1e+02 Score=31.56 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=38.2
Q ss_pred hhHH-HHHHHHHHHHhhcCccEEEecCCCCCC-----------CCHHHHHHHHHHHHhhcCCceEEecC
Q 011701 196 GAGR-AFLRSLHKQYADWSVDFVKHDCAFGDD-----------LDEGEISVVSEVFKGEHNRPIIYSLS 252 (479)
Q Consensus 196 p~~~-~~~~~~~~~~a~wGvdylK~D~~~~~~-----------~~~~~y~~~~~al~~~~gr~i~l~~~ 252 (479)
|+.+ .|++++++.+..+|+|.|-+|+-+... .+.+.|..+-+.|+++.+....+++.
T Consensus 89 ~~~R~~Fi~si~~~~~~~~fDGidiDwE~P~~~~~~~~~~~~~~d~~n~~~ll~elr~~l~~~~~ls~a 157 (345)
T cd02878 89 PANRDTFANNVVNFVNKYNLDGVDFDWEYPGAPDIPGIPAGDPDDGKNYLEFLKLLKSKLPSGKSLSIA 157 (345)
T ss_pred HHHHHHHHHHHHHHHHHcCCCceeecccCCcccCCCCCCCCChHHHHHHHHHHHHHHHHhCcCcEEEEE
Confidence 4444 588999999999999999999976421 12346766666665444444455443
No 133
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=29.17 E-value=6.1e+02 Score=26.02 Aligned_cols=30 Identities=23% Similarity=0.214 Sum_probs=24.8
Q ss_pred ccCCHHHHHHHHHHH---HhccccCCceEEEec
Q 011701 48 WIISEQDFLQSADIV---AKRLLPHGYEYVVVD 77 (479)
Q Consensus 48 ~~i~e~~i~~~ad~l---~~gl~~~Gy~yi~iD 77 (479)
..+|+++|.+..+.+ ++..+++||+.|.|=
T Consensus 125 ~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih 157 (353)
T cd02930 125 RELSEEEIEQTIEDFARCAALAREAGYDGVEIM 157 (353)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 569999999999865 346788999999994
No 134
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=28.95 E-value=1.1e+02 Score=30.37 Aligned_cols=17 Identities=24% Similarity=0.186 Sum_probs=14.3
Q ss_pred HHHHhhcCccEEEecCC
Q 011701 206 HKQYADWSVDFVKHDCA 222 (479)
Q Consensus 206 ~~~~a~wGvdylK~D~~ 222 (479)
++.+.++|||.|-.|.+
T Consensus 274 ~~~l~~~GVdgIiTD~~ 290 (290)
T cd08607 274 RKKLKELGVDGLIYDRI 290 (290)
T ss_pred HHHHHHcCCCEEEecCC
Confidence 56788999999998864
No 135
>TIGR00060 L18_bact ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model.
Probab=28.70 E-value=93 Score=26.87 Aligned_cols=51 Identities=24% Similarity=0.362 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHhccccCCceEEEeccccccccccCccCCCCcccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHHc
Q 011701 51 SEQDFLQSADIVAKRLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMVPDPDRWPSSKGGKGFTEVAKKVHDM 130 (479)
Q Consensus 51 ~e~~i~~~ad~l~~gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~~FP~~~~~~Gmk~la~~ih~~ 130 (479)
|-+........+++.+++.|.+-|++|-| | -+|-+ -+++|++.+++.
T Consensus 64 n~~aA~~vG~~la~ra~~~gi~~vvfDrg-------g---------------------~~YhG-----rv~A~a~~aRe~ 110 (114)
T TIGR00060 64 NKDAAKKVGKLVAERLKEKGIKDVVFDRG-------G---------------------YKYHG-----RVAALAEAAREA 110 (114)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCC-------C---------------------CcchH-----HHHHHHHHHHHh
Confidence 33445555556778888899999999832 1 12322 499999999999
Q ss_pred CCeE
Q 011701 131 GLKF 134 (479)
Q Consensus 131 Glk~ 134 (479)
||+|
T Consensus 111 Gl~F 114 (114)
T TIGR00060 111 GLNF 114 (114)
T ss_pred CCCC
Confidence 9986
No 136
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=28.57 E-value=1.3e+02 Score=30.13 Aligned_cols=50 Identities=10% Similarity=0.004 Sum_probs=34.2
Q ss_pred chhHH-HHHHHHHHHHhhcCccEEEecCCCCCCCCHHHHHHH----HHHHHhhcCC
Q 011701 195 LGAGR-AFLRSLHKQYADWSVDFVKHDCAFGDDLDEGEISVV----SEVFKGEHNR 245 (479)
Q Consensus 195 ~p~~~-~~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~y~~~----~~al~~~~gr 245 (479)
.|+.+ .|++++++.+...|+|.|-+|+-+....+.+.|..+ +++|. +.|.
T Consensus 85 ~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~~~~d~~~~~~fl~eL~~~l~-~~~~ 139 (298)
T cd06549 85 DPSARAKFIANIAAYLERNQADGIVLDFEELPADDLPKYVAFLSELRRRLP-AQGK 139 (298)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCEEEecCCCChhHHHHHHHHHHHHHHHhh-hcCc
Confidence 35555 488999999999999999999965433344556544 44554 4444
No 137
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=28.51 E-value=85 Score=33.41 Aligned_cols=51 Identities=20% Similarity=0.149 Sum_probs=33.5
Q ss_pred HHHHHHHHhhcCccEEEec-CCCCCCCCH--HHHHHHHHHHH---hhcCCceEEecC
Q 011701 202 LRSLHKQYADWSVDFVKHD-CAFGDDLDE--GEISVVSEVFK---GEHNRPIIYSLS 252 (479)
Q Consensus 202 ~~~~~~~~a~wGvdylK~D-~~~~~~~~~--~~y~~~~~al~---~~~gr~i~l~~~ 252 (479)
+...+..++.=|+||||=| .+..+.+.+ +++.+..+|++ +++|+..+|..+
T Consensus 178 ~a~~~y~~~~GGvD~IKDDE~l~~q~f~p~~eRv~~~~~ai~~a~~eTG~~~~ya~N 234 (424)
T cd08208 178 FAELGYQSWLGGLDIAKDDEMLADVDWCPLEERAALLGKARRRAEAETGVPKIYLAN 234 (424)
T ss_pred HHHHHHHHHcCCcccccccccccCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEE
Confidence 4455677888899999999 444444443 46665555544 289988666544
No 138
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=28.21 E-value=1.9e+02 Score=29.02 Aligned_cols=54 Identities=13% Similarity=0.142 Sum_probs=35.6
Q ss_pred ccccCCceEEEeccccccccccCccCCCCcccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEee
Q 011701 65 RLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMVPDPDRWPSSKGGKGFTEVAKKVHDMGLKFGIHVM 139 (479)
Q Consensus 65 gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~~FP~~~~~~Gmk~la~~ih~~Glk~Giy~~ 139 (479)
.+.++|.+.|.|+|-|....- -+.-....--.|. ++.+++.||+.|.+..++.+
T Consensus 176 ~~~~~G~d~i~i~d~~~~~~~---------------isp~~f~e~~~p~------~k~i~~~i~~~g~~~~lH~c 229 (330)
T cd03465 176 ALIEAGADGIYISDPWASSSI---------------LSPEDFKEFSLPY------LKKVFDAIKALGGPVIHHNC 229 (330)
T ss_pred HHHHhCCCEEEEeCCccccCC---------------CCHHHHHHHhhHH------HHHHHHHHHHcCCceEEEEC
Confidence 466779999999998864210 0000011112454 89999999999998888864
No 139
>KOG2806 consensus Chitinase [Carbohydrate transport and metabolism]
Probab=27.71 E-value=1.2e+02 Score=32.29 Aligned_cols=60 Identities=15% Similarity=0.109 Sum_probs=41.5
Q ss_pred eecCCchhHH-HHHHHHHHHHhhcCccEEEecCCCC--CCCCHHHH----HHHHHHHHh---hcCCceEE
Q 011701 190 AVNTKLGAGR-AFLRSLHKQYADWSVDFVKHDCAFG--DDLDEGEI----SVVSEVFKG---EHNRPIIY 249 (479)
Q Consensus 190 ~lD~t~p~~~-~~~~~~~~~~a~wGvdylK~D~~~~--~~~~~~~y----~~~~~al~~---~~gr~i~l 249 (479)
....+.|..+ .|+++.+..+.++|+|.|=+|+-+. ...+...| +.++.++.+ .++|++.+
T Consensus 139 s~~~s~~~~r~~FI~Sii~fl~~~~fDGvDL~We~P~~~~~d~~~~~~~i~elr~~~~~~~~~~~~~~~~ 208 (432)
T KOG2806|consen 139 SLVLSDRMIRAKFIESVVSFIKDYGFDGVDLAWEWPLFTPSDQLEFSRFIQELRSAFARETLKSPDTAKV 208 (432)
T ss_pred hhhhcChHHHHHHHHHHHHHHHHcCCCceeeeeECCCCchhhHHHHHHHHHHHHHHHHHHhhccCCccce
Confidence 3444555555 4999999999999999999999887 33445555 456666652 45666533
No 140
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=27.63 E-value=91 Score=32.30 Aligned_cols=61 Identities=13% Similarity=0.281 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHhccccCCceEEEe-ccccccccccCccCCCCcccccCCCCCceeCCCCCCCCCCCCChHHHHHHHH
Q 011701 50 ISEQDFLQSADIVAKRLLPHGYEYVVV-DYLWYRKKVKDAHIDSEGIDLIDEWGRMVPDPDRWPSSKGGKGFTEVAKKVH 128 (479)
Q Consensus 50 i~e~~i~~~ad~l~~gl~~~Gy~yi~i-DdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~~FP~~~~~~Gmk~la~~ih 128 (479)
.+++.+.+-++.| +++|+++|-| .=.|...++. -|.+ .|. .|..+++.++
T Consensus 7 ~~~e~~~~d~~~m----~~~G~n~vri~~~~W~~lEP~--------------eG~y-----dF~------~lD~~l~~a~ 57 (374)
T PF02449_consen 7 WPEEEWEEDLRLM----KEAGFNTVRIGEFSWSWLEPE--------------EGQY-----DFS------WLDRVLDLAA 57 (374)
T ss_dssp S-CCHHHHHHHHH----HHHT-SEEEE-CCEHHHH-SB--------------TTB--------H------HHHHHHHHHH
T ss_pred CCHHHHHHHHHHH----HHcCCCEEEEEEechhhccCC--------------CCee-----ecH------HHHHHHHHHH
Confidence 4556777777766 5679999997 5578754321 1333 254 5999999999
Q ss_pred HcCCeEEEEee
Q 011701 129 DMGLKFGIHVM 139 (479)
Q Consensus 129 ~~Glk~Giy~~ 139 (479)
+.|+|+=|-+.
T Consensus 58 ~~Gi~viL~~~ 68 (374)
T PF02449_consen 58 KHGIKVILGTP 68 (374)
T ss_dssp CTT-EEEEEEC
T ss_pred hccCeEEEEec
Confidence 99999877654
No 141
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=27.49 E-value=1.2e+02 Score=32.67 Aligned_cols=52 Identities=15% Similarity=0.074 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhcCccEEEec-CCCCCCCCH--HHHHHHHHHHH---hhcCCceEEecC
Q 011701 201 FLRSLHKQYADWSVDFVKHD-CAFGDDLDE--GEISVVSEVFK---GEHNRPIIYSLS 252 (479)
Q Consensus 201 ~~~~~~~~~a~wGvdylK~D-~~~~~~~~~--~~y~~~~~al~---~~~gr~i~l~~~ 252 (479)
-+...+..++.=|+||||=| .+..+.+.+ +++.+..++++ +++|+..+|..+
T Consensus 162 ~~A~~~~~~~~GGvD~IKDDE~l~~~~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~N 219 (450)
T cd08212 162 NYGRVVYECLRGGLDFTKDDENINSQPFMRWRDRFLFVAEAVNKAQAETGEVKGHYLN 219 (450)
T ss_pred HHHHHHHHHHccCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeecc
Confidence 44555777889999999999 444444433 45554444443 289987666554
No 142
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=27.41 E-value=1.5e+02 Score=28.52 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhcCccEEEecCCCCCCCCHHHHHHHHHHHHhhcCCc----eEEec
Q 011701 200 AFLRSLHKQYADWSVDFVKHDCAFGDDLDEGEISVVSEVFKGEHNRP----IIYSL 251 (479)
Q Consensus 200 ~~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~y~~~~~al~~~~gr~----i~l~~ 251 (479)
+.+....+...+-|.||||.-+-.....+.+....|++++. .+..| +.++-
T Consensus 146 ~~I~~a~ria~e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~-~~~~p~~~~Vk~sG 200 (236)
T PF01791_consen 146 DLIARAARIAAELGADFVKTSTGKPVGATPEDVELMRKAVE-AAPVPGKVGVKASG 200 (236)
T ss_dssp HHHHHHHHHHHHTT-SEEEEE-SSSSCSHHHHHHHHHHHHH-THSSTTTSEEEEES
T ss_pred HHHHHHHHHHHHhCCCEEEecCCccccccHHHHHHHHHHHH-hcCCCcceEEEEeC
Confidence 45666678889999999999976333334567888999998 88877 77764
No 143
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=27.05 E-value=1.7e+02 Score=29.23 Aligned_cols=161 Identities=11% Similarity=0.150 Sum_probs=69.6
Q ss_pred ceEeccccccCccCCHHHHHHHHHHHHhccccCCceEEEec-----cccccccccCccCCCCcccccCCC-CC-ceeCCC
Q 011701 37 PRGWNSYDSFCWIISEQDFLQSADIVAKRLLPHGYEYVVVD-----YLWYRKKVKDAHIDSEGIDLIDEW-GR-MVPDPD 109 (479)
Q Consensus 37 pmGWnSW~~~~~~i~e~~i~~~ad~l~~gl~~~Gy~yi~iD-----dgW~~~~~~g~~~~~~~~~~~d~~-G~-~~~d~~ 109 (479)
|+| .|.+..-...+++++...++-. ++.||+.|++- +++......+.. .....|.. .+ -.+|+.
T Consensus 15 ~lg-dT~W~~~~~~~~~e~~~yL~~r----~~qgFN~iq~~~l~~~~~~~~~n~~~~~----~~~~~~~~~~d~~~~N~~ 85 (289)
T PF13204_consen 15 WLG-DTAWSLFHRLTREEWEQYLDTR----KEQGFNVIQMNVLPQWDGYNTPNRYGFA----PFPDEDPGQFDFTRPNPA 85 (289)
T ss_dssp EEE-EE-TTHHHH--HHHHHHHHHHH----HHTT--EEEEES-SSSS-B----TTS-B----S-SSTT------TT----
T ss_pred ehh-HHHHHHhhCCCHHHHHHHHHHH----HHCCCCEEEEEeCCCcccccccccCCCc----CCCCCCccccCCCCCCHH
Confidence 355 4444444467777776666654 55677777763 333221111100 00000100 11 235555
Q ss_pred CCCCCCCCCChHHHHHHHHHcCCeEEEEeecCcccccccCCccccccCCCCCCcccCccchhhhhcccCCCCCCCCCCce
Q 011701 110 RWPSSKGGKGFTEVAKKVHDMGLKFGIHVMKGISNQAVNANTLIYDYDKKGPYTEAGRQWRAQDIAIKEKPCAWMPHGFM 189 (479)
Q Consensus 110 ~FP~~~~~~Gmk~la~~ih~~Glk~Giy~~pg~~~~~~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~~~ 189 (479)
-|-. +..+++++.++||.++|=..-| |.+.++ .|..+
T Consensus 86 YF~~------~d~~i~~a~~~Gi~~~lv~~wg---~~~~~~-------------------------------~Wg~~--- 122 (289)
T PF13204_consen 86 YFDH------LDRRIEKANELGIEAALVPFWG---CPYVPG-------------------------------TWGFG--- 122 (289)
T ss_dssp HHHH------HHHHHHHHHHTT-EEEEESS-H---HHHH-----------------------------------------
T ss_pred HHHH------HHHHHHHHHHCCCeEEEEEEEC---Cccccc-------------------------------ccccc---
Confidence 5654 8999999999999998642110 111000 01000
Q ss_pred eecCCchhHHHHHHHHHHHHhhc-CccEEE-ecCCCCCCCCHHHHHHHHHHHHhhcCCceEEec
Q 011701 190 AVNTKLGAGRAFLRSLHKQYADW-SVDFVK-HDCAFGDDLDEGEISVVSEVFKGEHNRPIIYSL 251 (479)
Q Consensus 190 ~lD~t~p~~~~~~~~~~~~~a~w-GvdylK-~D~~~~~~~~~~~y~~~~~al~~~~gr~i~l~~ 251 (479)
.-..+.-.++.|.+.+++.|++. .|=++= -|. .....+.+.+.+|.+.|++..+.. +.++
T Consensus 123 ~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~-~~~~~~~~~w~~~~~~i~~~dp~~-L~T~ 184 (289)
T PF13204_consen 123 PNIMPPENAERYGRYVVARYGAYPNVIWILGGDY-FDTEKTRADWDAMARGIKENDPYQ-LITI 184 (289)
T ss_dssp TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS---TTSSHHHHHHHHHHHHHH--SS--EEE
T ss_pred ccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc-CCCCcCHHHHHHHHHHHHhhCCCC-cEEE
Confidence 01112224567999999999887 444432 133 112234567889998888444434 4444
No 144
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=26.58 E-value=1.2e+02 Score=32.70 Aligned_cols=52 Identities=13% Similarity=0.021 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhcCccEEEec-CCCCCCCCH--HHHHHHHHHHH---hhcCCceEEecC
Q 011701 201 FLRSLHKQYADWSVDFVKHD-CAFGDDLDE--GEISVVSEVFK---GEHNRPIIYSLS 252 (479)
Q Consensus 201 ~~~~~~~~~a~wGvdylK~D-~~~~~~~~~--~~y~~~~~al~---~~~gr~i~l~~~ 252 (479)
-+..++..++.=|+||||=| .+..+.+.+ +++.+..++++ +.+|+..++.++
T Consensus 184 ~~A~~~y~~~~GGvD~IKDDE~l~dq~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~N 241 (475)
T CHL00040 184 NYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLN 241 (475)
T ss_pred HHHHHHHHHHcCCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeec
Confidence 34445667788899999999 444444443 46655555554 279987665443
No 145
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=26.57 E-value=1.4e+02 Score=27.45 Aligned_cols=74 Identities=8% Similarity=0.091 Sum_probs=40.9
Q ss_pred CccCCHHHHHHHHHHHHhccccCCceEEEeccccccccccCccCCCCcccccCCCCCceeCCCCCCCCCCCCChHHHHHH
Q 011701 47 CWIISEQDFLQSADIVAKRLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMVPDPDRWPSSKGGKGFTEVAKK 126 (479)
Q Consensus 47 ~~~i~e~~i~~~ad~l~~gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~~FP~~~~~~Gmk~la~~ 126 (479)
..+.++++..+..+.| ++.|.++|+|= |..-.. . ..+..-.. +.+|.. ....=+..+.+.
T Consensus 14 ~~~~~~~~W~~~~~~m----~~~GidtlIlq--~~~~~~-~-----------~~yps~~~-~~~~~~-~~~d~l~~~L~~ 73 (166)
T PF14488_consen 14 HQNWTPAQWREEFRAM----KAIGIDTLILQ--WTGYGG-F-----------AFYPSKLS-PGGFYM-PPVDLLEMILDA 73 (166)
T ss_pred hcCCCHHHHHHHHHHH----HHcCCcEEEEE--EeecCC-c-----------ccCCcccc-CccccC-CcccHHHHHHHH
Confidence 4578899999888877 55677777653 332210 0 00000000 112221 001136788888
Q ss_pred HHHcCCeE--EEEeec
Q 011701 127 VHDMGLKF--GIHVMK 140 (479)
Q Consensus 127 ih~~Glk~--Giy~~p 140 (479)
..+.|||+ |+|.++
T Consensus 74 A~~~Gmkv~~Gl~~~~ 89 (166)
T PF14488_consen 74 ADKYGMKVFVGLYFDP 89 (166)
T ss_pred HHHcCCEEEEeCCCCc
Confidence 88999985 887654
No 146
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=26.52 E-value=1.6e+02 Score=30.66 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=31.8
Q ss_pred hccccCCceEEEeccccccccccCccCCCCcccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCC
Q 011701 64 KRLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMVPDPDRWPSSKGGKGFTEVAKKVHDMGL 132 (479)
Q Consensus 64 ~gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~~FP~~~~~~Gmk~la~~ih~~Gl 132 (479)
+.+.++|-+-|+|.|.|..... ...++.=.+| .++.+.+.+++.+-
T Consensus 196 ~~qi~aGAdavqifDsW~g~l~-----------------~~~~~~f~~~------~~~~i~~~vk~~~~ 241 (352)
T COG0407 196 KAQIEAGADAVQIFDSWAGVLS-----------------MIDYDEFVLP------YMKRIVREVKEVKG 241 (352)
T ss_pred HHHHHhCCCEEEeeccccccCC-----------------cccHHHHhhh------HHHHHHHHHHHhCC
Confidence 4567889999999999975421 0112222445 59999999998665
No 147
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=26.46 E-value=1.4e+02 Score=32.35 Aligned_cols=52 Identities=15% Similarity=0.088 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhcCccEEEec-CCCCCCCCH--HHHHHHHHHHH---hhcCCceEEecC
Q 011701 201 FLRSLHKQYADWSVDFVKHD-CAFGDDLDE--GEISVVSEVFK---GEHNRPIIYSLS 252 (479)
Q Consensus 201 ~~~~~~~~~a~wGvdylK~D-~~~~~~~~~--~~y~~~~~al~---~~~gr~i~l~~~ 252 (479)
-+...+..++.=|+||||-| .+..+.+.+ +++.+..++++ +.+|+..+|..+
T Consensus 177 ~~a~~~y~~~~GGvD~IKDDE~l~~q~f~p~~~Rv~~~~~a~~~a~~eTG~~k~y~~N 234 (468)
T PRK04208 177 NYGRVVYEALRGGLDFTKDDENLNSQPFNRWRDRFLFVMEAIDKAEAETGERKGHYLN 234 (468)
T ss_pred HHHHHHHHHHhcCCceeeCCCCCCCCCCccHHHHHHHHHHHHHHHHHhhCCcceEEEe
Confidence 44455667778899999999 444444432 45554444443 289998666554
No 148
>PRK08227 autoinducer 2 aldolase; Validated
Probab=26.36 E-value=4.1e+02 Score=26.38 Aligned_cols=42 Identities=12% Similarity=0.153 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhcCccEEEecCCCCCCCCHHHHHHHHHHHHhhcCCceEEecC
Q 011701 201 FLRSLHKQYADWSVDFVKHDCAFGDDLDEGEISVVSEVFKGEHNRPIIYSLS 252 (479)
Q Consensus 201 ~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~y~~~~~al~~~~gr~i~l~~~ 252 (479)
++...++.-++.|.|+||..|+ . ..|++++. .+..|+++.-.
T Consensus 159 ~ia~aaRiaaELGADiVK~~y~--------~-~~f~~vv~-a~~vPVviaGG 200 (264)
T PRK08227 159 YFSLATRIAAEMGAQIIKTYYV--------E-EGFERITA-GCPVPIVIAGG 200 (264)
T ss_pred HHHHHHHHHHHHcCCEEecCCC--------H-HHHHHHHH-cCCCcEEEeCC
Confidence 6677777789999999999996 1 56777787 77788886543
No 149
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=25.51 E-value=1.4e+02 Score=29.31 Aligned_cols=18 Identities=11% Similarity=0.283 Sum_probs=16.5
Q ss_pred HHHHHHHHHcCCeEEEEe
Q 011701 121 TEVAKKVHDMGLKFGIHV 138 (479)
Q Consensus 121 k~la~~ih~~Glk~Giy~ 138 (479)
+.+++.+|+.|++..+|+
T Consensus 221 ~~~v~~~~~~G~~v~vWT 238 (264)
T cd08575 221 PNLFDHLRKRGIQVYLWV 238 (264)
T ss_pred HHHHHHHHhcCCcEEEEE
Confidence 689999999999999997
No 150
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=25.49 E-value=1.4e+02 Score=31.09 Aligned_cols=50 Identities=22% Similarity=0.260 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhcCccEEEecCCCCC--CCCH-HHHHHHHHHHH---hhcCCceEEe
Q 011701 201 FLRSLHKQYADWSVDFVKHDCAFGD--DLDE-GEISVVSEVFK---GEHNRPIIYS 250 (479)
Q Consensus 201 ~~~~~~~~~a~wGvdylK~D~~~~~--~~~~-~~y~~~~~al~---~~~gr~i~l~ 250 (479)
-+..++..+++=|||+||.|...++ .++. ++.....++++ +++|+..+|.
T Consensus 147 ~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~ 202 (367)
T cd08205 147 ELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYA 202 (367)
T ss_pred HHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEE
Confidence 3455578888899999999976553 2333 46766666665 2667754443
No 151
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=25.28 E-value=1.5e+02 Score=29.94 Aligned_cols=55 Identities=9% Similarity=0.236 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhhcCccEEEecCCCCCC--CCHHHHHHHHHHHHh---hc---CCceEEecCC
Q 011701 199 RAFLRSLHKQYADWSVDFVKHDCAFGDD--LDEGEISVVSEVFKG---EH---NRPIIYSLSP 253 (479)
Q Consensus 199 ~~~~~~~~~~~a~wGvdylK~D~~~~~~--~~~~~y~~~~~al~~---~~---gr~i~l~~~~ 253 (479)
+.|++++++.+...|+|.|=+|+-+... .+.+.|..+-+.|++ +. ++...+++..
T Consensus 93 ~~fi~~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~lr~~l~~~~~~~~~~~lsi~v 155 (334)
T smart00636 93 KKFIDSIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKELREALDKEGAEGKGYLLTIAV 155 (334)
T ss_pred HHHHHHHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHHHHHHHHhcccCCceEEEEEe
Confidence 4588999999999999999999876543 334456554444432 22 4567777653
No 152
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=25.14 E-value=96 Score=29.43 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=21.9
Q ss_pred ChHHHHHHHHHcCCeEEEEeecCcccc
Q 011701 119 GFTEVAKKVHDMGLKFGIHVMKGISNQ 145 (479)
Q Consensus 119 Gmk~la~~ih~~Glk~Giy~~pg~~~~ 145 (479)
.+..+.++||++|+|+||-+.|++...
T Consensus 93 ~~~~~i~~ik~~g~k~GialnP~T~~~ 119 (201)
T PF00834_consen 93 DPKETIKYIKEAGIKAGIALNPETPVE 119 (201)
T ss_dssp THHHHHHHHHHTTSEEEEEE-TTS-GG
T ss_pred CHHHHHHHHHHhCCCEEEEEECCCCch
Confidence 478999999999999999999987543
No 153
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=24.99 E-value=1.3e+02 Score=27.40 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=19.3
Q ss_pred ChHHHHHHHHHcCCeEEEEee
Q 011701 119 GFTEVAKKVHDMGLKFGIHVM 139 (479)
Q Consensus 119 Gmk~la~~ih~~Glk~Giy~~ 139 (479)
|++.+.++++++|++++|-++
T Consensus 47 gv~e~L~~Lk~~g~~l~I~Sn 67 (170)
T TIGR01668 47 ALRDWIEELKAAGRKLLIVSN 67 (170)
T ss_pred hHHHHHHHHHHcCCEEEEEeC
Confidence 699999999999999999875
No 154
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=24.91 E-value=1.8e+02 Score=27.90 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=15.4
Q ss_pred HHHHhhcCccEEEecCCC
Q 011701 206 HKQYADWSVDFVKHDCAF 223 (479)
Q Consensus 206 ~~~~a~wGvdylK~D~~~ 223 (479)
++.+.+||||.|=.|+..
T Consensus 219 ~~~l~~~GVdgiiTD~~~ 236 (237)
T cd08583 219 AQEYKKLGVYGIYTDFLT 236 (237)
T ss_pred HHHHHHcCCCEEEeCCCC
Confidence 678899999999999863
No 155
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=24.75 E-value=2.9e+02 Score=28.14 Aligned_cols=73 Identities=16% Similarity=0.270 Sum_probs=45.8
Q ss_pred CccCCHHHHHHHHHHH---HhccccCCceEEEeccc--c------ccccccCccCCCCcccccCCCCCceeCCCCCCCCC
Q 011701 47 CWIISEQDFLQSADIV---AKRLLPHGYEYVVVDYL--W------YRKKVKDAHIDSEGIDLIDEWGRMVPDPDRWPSSK 115 (479)
Q Consensus 47 ~~~i~e~~i~~~ad~l---~~gl~~~Gy~yi~iDdg--W------~~~~~~g~~~~~~~~~~~d~~G~~~~d~~~FP~~~ 115 (479)
-..+|+++|.+..+.+ ++..+++||+-|.|-.+ + ....+. -.|+||--..|..+|+
T Consensus 141 p~~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~----------R~D~yGgsl~nr~rf~--- 207 (336)
T cd02932 141 PRELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNK----------RTDEYGGSLENRMRFL--- 207 (336)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCC----------CCcccCCCHHHHhHHH---
Confidence 3579999999999865 35678899999999763 3 111100 1356776555545554
Q ss_pred CCCChHHHHHHHHHc---CCeEEEE
Q 011701 116 GGKGFTEVAKKVHDM---GLKFGIH 137 (479)
Q Consensus 116 ~~~Gmk~la~~ih~~---Glk~Giy 137 (479)
..+++.|++. ++.+|+=
T Consensus 208 -----~eiv~aIR~~vG~d~~v~vr 227 (336)
T cd02932 208 -----LEVVDAVRAVWPEDKPLFVR 227 (336)
T ss_pred -----HHHHHHHHHHcCCCceEEEE
Confidence 5777777764 3444443
No 156
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=23.65 E-value=61 Score=33.36 Aligned_cols=39 Identities=21% Similarity=0.200 Sum_probs=28.2
Q ss_pred cccccCccCCHHHHHHHHHHHHh---ccccCCceEEEeccccc
Q 011701 42 SYDSFCWIISEQDFLQSADIVAK---RLLPHGYEYVVVDYLWY 81 (479)
Q Consensus 42 SW~~~~~~i~e~~i~~~ad~l~~---gl~~~Gy~yi~iDdgW~ 81 (479)
+.+.+|.+ .|+.+.+.|+++.+ .|.++|.+||+||+.-.
T Consensus 139 ~~~~~Y~~-~~el~~dlA~al~~Ei~~L~~aG~~~IQiDeP~l 180 (339)
T PRK09121 139 LYDDHYKS-REKLAWEFAKILNQEAKELEAAGVDIIQFDEPAF 180 (339)
T ss_pred hccccCCC-HHHHHHHHHHHHHHHHHHHHHCCCCEEEecccHH
Confidence 45555543 36677788888753 68889999999998654
No 157
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=23.63 E-value=1.4e+02 Score=29.45 Aligned_cols=16 Identities=38% Similarity=0.239 Sum_probs=14.0
Q ss_pred HHHHhhcCccEEEecC
Q 011701 206 HKQYADWSVDFVKHDC 221 (479)
Q Consensus 206 ~~~~a~wGvdylK~D~ 221 (479)
++.+.+||||.|=.|+
T Consensus 266 ~~~l~~~GVdgIiTD~ 281 (282)
T cd08605 266 VERQADLGVDGVIVDH 281 (282)
T ss_pred HHHHHHcCCCEEEeCC
Confidence 5788999999998886
No 158
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=23.57 E-value=2e+02 Score=29.00 Aligned_cols=55 Identities=13% Similarity=0.126 Sum_probs=34.4
Q ss_pred hhHH-HHHHHHHHHHhhcCccEEEec-CCCCCC--C--CHHHHHH----HHHHHHhhcCCceEEec
Q 011701 196 GAGR-AFLRSLHKQYADWSVDFVKHD-CAFGDD--L--DEGEISV----VSEVFKGEHNRPIIYSL 251 (479)
Q Consensus 196 p~~~-~~~~~~~~~~a~wGvdylK~D-~~~~~~--~--~~~~y~~----~~~al~~~~gr~i~l~~ 251 (479)
|+.+ .|++++++.+.++|+|.|=+| +-+... . +.+.|.. ++++|. +.|..+.+.+
T Consensus 90 ~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~~~l~el~~~l~-~~~~~l~~~v 154 (318)
T cd02876 90 EQEREKLIKLLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELIQLVIHLGETLH-SANLKLILVI 154 (318)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEechhhhcccCCHHHHHHHHHHHHHHHHHHh-hcCCEEEEEE
Confidence 4444 488999999999999999999 443221 1 2334544 455554 4455444444
No 159
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=23.24 E-value=3.1e+02 Score=26.93 Aligned_cols=44 Identities=14% Similarity=0.127 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhcCccEEEecCCCCCCCCHHHH----HHHHHHHHhhcC
Q 011701 199 RAFLRSLHKQYADWSVDFVKHDCAFGDDLDEGEI----SVVSEVFKGEHN 244 (479)
Q Consensus 199 ~~~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~y----~~~~~al~~~~g 244 (479)
+.|++++.+.+..+|+|.|=+|+-+.. .+.+.| .+++++|+ +.+
T Consensus 99 ~~fv~S~~~~l~~~~fDGiDiDwE~~~-~d~~~f~~ll~~l~~~l~-~~~ 146 (253)
T cd06544 99 SNAVSSLTSIIQTYNLDGIDIDYEHFP-ADPDTFVECIGQLITELK-NNG 146 (253)
T ss_pred HHHHHHHHHHHHHhCCCceeeecccCC-cCHHHHHHHHHHHHHHhh-hcC
Confidence 456788889999999999999997643 234445 35566666 444
No 160
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=23.08 E-value=1.3e+02 Score=30.30 Aligned_cols=45 Identities=18% Similarity=0.322 Sum_probs=29.2
Q ss_pred eecCCchhHHHHHHHHHHHHhhcCccEEEecCCCCCCCC---HHHHHHHHHHHH
Q 011701 190 AVNTKLGAGRAFLRSLHKQYADWSVDFVKHDCAFGDDLD---EGEISVVSEVFK 240 (479)
Q Consensus 190 ~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~---~~~y~~~~~al~ 240 (479)
-+|+.-|+ +.++.+++||+|||-+--...+++. .+.+..--+.|+
T Consensus 138 PlDp~EPe------NTAeAIasWgl~YiVlTSVDRDDlpDgGa~HiAkTVq~iK 185 (360)
T KOG2672|consen 138 PLDPNEPE------NTAEAIASWGLDYIVLTSVDRDDLPDGGANHIAKTVQKIK 185 (360)
T ss_pred CCCCCCcc------cHHHHHHHcCCCeEEEEecccccCcCcchHHHHHHHHHHH
Confidence 47888775 4578899999999988655443332 334444444454
No 161
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=23.07 E-value=3.9e+02 Score=21.36 Aligned_cols=56 Identities=11% Similarity=0.141 Sum_probs=24.3
Q ss_pred EEEEEEeCCCCCeEEEEEhhhhcccCCCCCCCCceEE-------EEecCCCcceeeccEE-EEEEcCCcEEEEEEE
Q 011701 410 IYLAFFNLNNAKTAISAEIADLGKALPGWKLNPSCKG-------TEIWSGKDFGVMQKSV-STEVETHGCALFVLN 477 (479)
Q Consensus 410 ~~valfN~~~~~~~vtv~l~~lg~~l~~~~~~~~~~v-------rDlW~g~~~g~~~~~~-~~~l~~h~~~ll~lt 477 (479)
+.+-+.|-++.+.+++++- ++.|.+ +.+|.=.+--.+...+ +..|+|+++..|+.+
T Consensus 4 ~~l~v~N~s~~~v~l~f~s------------gq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~ 67 (82)
T PF12690_consen 4 FTLTVTNNSDEPVTLQFPS------------GQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEET 67 (82)
T ss_dssp EEEEEEE-SSS-EEEEESS------------S--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEE
T ss_pred EEEEEEeCCCCeEEEEeCC------------CCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEE
Confidence 3566788777665555431 122222 3445433222344333 458999999998864
No 162
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=22.60 E-value=50 Score=33.94 Aligned_cols=34 Identities=9% Similarity=-0.054 Sum_probs=30.2
Q ss_pred eeecCCchhHHHHHHHHHHHHhhcCc-cEEEecCC
Q 011701 189 MAVNTKLGAGRAFLRSLHKQYADWSV-DFVKHDCA 222 (479)
Q Consensus 189 ~~lD~t~p~~~~~~~~~~~~~a~wGv-dylK~D~~ 222 (479)
-.+|.+||.+++..+.+..++.+-|| ++.|++.+
T Consensus 263 HvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~m 297 (410)
T KOG0410|consen 263 HVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNM 297 (410)
T ss_pred EEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHH
Confidence 36899999999999999999999999 68888764
No 163
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=22.51 E-value=1.5e+02 Score=25.40 Aligned_cols=52 Identities=23% Similarity=0.293 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHHhccccCCceEEEeccccccccccCccCCCCcccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHH
Q 011701 50 ISEQDFLQSADIVAKRLLPHGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMVPDPDRWPSSKGGKGFTEVAKKVHD 129 (479)
Q Consensus 50 i~e~~i~~~ad~l~~gl~~~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~~FP~~~~~~Gmk~la~~ih~ 129 (479)
-|-+........+++.++++|++-|+.|-| | -+|-+ -++++++-+++
T Consensus 58 ~n~~aA~~vG~lla~ra~~~gi~~vvfDrg----------------------g------~~yhG-----rV~a~a~~are 104 (109)
T CHL00139 58 STCDASKLVGQKLAKKSLKKGITKVVFDRG----------------------G------KLYHG-----RIKALAEAARE 104 (109)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEcCC----------------------C------Cccch-----HHHHHHHHHHH
Confidence 444555566667788889999999999932 0 12222 49999999999
Q ss_pred cCCeE
Q 011701 130 MGLKF 134 (479)
Q Consensus 130 ~Glk~ 134 (479)
.||+|
T Consensus 105 ~GL~f 109 (109)
T CHL00139 105 AGLQF 109 (109)
T ss_pred hCCCC
Confidence 99986
No 164
>PRK10785 maltodextrin glucosidase; Provisional
Probab=22.50 E-value=2.6e+02 Score=31.17 Aligned_cols=61 Identities=11% Similarity=-0.026 Sum_probs=37.4
Q ss_pred CCeEEEEEECCCCCEEEEEEeCCCCCeEEEEEhhhhcccCCCCCCCCceEEEEecCCCcceeeccEEEEEEcC
Q 011701 396 TGVRSWIATGRQGEIYLAFFNLNNAKTAISAEIADLGKALPGWKLNPSCKGTEIWSGKDFGVMQKSVSTEVET 468 (479)
Q Consensus 396 ~~~~vw~~~l~~g~~~valfN~~~~~~~vtv~l~~lg~~l~~~~~~~~~~vrDlW~g~~~g~~~~~~~~~l~~ 468 (479)
.+.-++.+.. +++.+++++|.+ +.++++++..+++. .....++.++... ..+++++++||+
T Consensus 538 ~~v~af~R~~-~~~~vlVviN~s-~~~~v~lp~~~~~~---------~~~~~~~~~~~~~-~~~~~~~~~~~~ 598 (598)
T PRK10785 538 GNVVVFARVL-QQQRVLVAINRG-EACEVVLPASPLLN---------VAQWQRKEGHGDL-TDGGGVILTLPA 598 (598)
T ss_pred CCEEEEEEEC-CCCEEEEEEECC-CCeEEecccccccC---------CcceeeccCceeE-EecCeeEEecCC
Confidence 3445566654 356789999998 66788887766642 2344555555543 234556667664
No 165
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=22.24 E-value=89 Score=30.02 Aligned_cols=26 Identities=12% Similarity=0.281 Sum_probs=22.9
Q ss_pred CCCCCCCCCCChHHHHHHHHHcCCeEEEEeec
Q 011701 109 DRWPSSKGGKGFTEVAKKVHDMGLKFGIHVMK 140 (479)
Q Consensus 109 ~~FP~~~~~~Gmk~la~~ih~~Glk~Giy~~p 140 (479)
.-|| |+..+.+++|++|++.+|+++.
T Consensus 95 ~lyp------gv~e~L~~Lk~~G~~l~I~Sn~ 120 (220)
T TIGR01691 95 HLYP------DVPPALEAWLQLGLRLAVYSSG 120 (220)
T ss_pred CcCc------CHHHHHHHHHHCCCEEEEEeCC
Confidence 3677 6999999999999999999863
No 166
>cd04469 S1_Hex1 S1_Hex1: Hex1, S1-like RNA-binding domain. Hex1 protein is the major component of the Woronin body in filamentous fungi. The Woronin body is a dense vesicle and plays a vital role in filamentous fungi cell integrity. When cell damage occurs, Woronin bodies seal the septal pore to prevent further cytoplasmic bleeding. Hex1 protein self-assembles to form the solid core of the Woronin body vesicle. The Hex1 sequence and structure are similar to eukaryotic initiation factor 5A (eIF5A), suggesting they share a common ancestor during evolution. All members of the EF superfamily to which Hex1 belongs, contain an S1 domain, which has been shown to bind RNA or single-stranded DNA and often interacts with the ribosome.
Probab=22.05 E-value=1.1e+02 Score=24.31 Aligned_cols=37 Identities=8% Similarity=0.002 Sum_probs=26.7
Q ss_pred ceEEEeccccccccccCccCCCCcccccCCCCCceeCCCCCC-CCCCCCChHHHHHHHHH
Q 011701 71 YEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMVPDPDRWP-SSKGGKGFTEVAKKVHD 129 (479)
Q Consensus 71 y~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~~FP-~~~~~~Gmk~la~~ih~ 129 (479)
|..+.||||.-.. +++.|+..-| -+.| . | .|.+.|++
T Consensus 5 YqLidI~DG~lsL--------------M~e~G~~kdD-l~lP~~-----~--~l~~~I~~ 42 (75)
T cd04469 5 YRVLDIQDGSIVA--------------MTETGDVKQG-LPVIDQ-----S--NLWTRLKT 42 (75)
T ss_pred EEEEEecCCeEEE--------------EcCCCCcccC-ccCCCc-----c--hHHHHHHH
Confidence 6788899998875 4667887776 5678 5 3 66666665
No 167
>smart00642 Aamy Alpha-amylase domain.
Probab=21.76 E-value=1.4e+02 Score=27.23 Aligned_cols=16 Identities=31% Similarity=0.617 Sum_probs=15.0
Q ss_pred ChHHHHHHHHHcCCeE
Q 011701 119 GFTEVAKKVHDMGLKF 134 (479)
Q Consensus 119 Gmk~la~~ih~~Glk~ 134 (479)
.|+.|++.+|++|+++
T Consensus 71 d~~~lv~~~h~~Gi~v 86 (166)
T smart00642 71 DFKELVDAAHARGIKV 86 (166)
T ss_pred HHHHHHHHHHHCCCEE
Confidence 6999999999999995
No 168
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=21.69 E-value=98 Score=28.33 Aligned_cols=72 Identities=17% Similarity=0.049 Sum_probs=41.1
Q ss_pred cccCccCCHHHHHHHHHHHHhccc-c-CCceEEEeccccccccccCccCCCCcccccCCCCCceeCCCCCCCCCCCCChH
Q 011701 44 DSFCWIISEQDFLQSADIVAKRLL-P-HGYEYVVVDYLWYRKKVKDAHIDSEGIDLIDEWGRMVPDPDRWPSSKGGKGFT 121 (479)
Q Consensus 44 ~~~~~~i~e~~i~~~ad~l~~gl~-~-~Gy~yi~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~~FP~~~~~~Gmk 121 (479)
|.|..-.|+++..++|+.+-+.++ . .+.-.+.||--+...... .....+. -++
T Consensus 55 Yhf~~~~~~~~a~~qA~~f~~~~~~~~~~~~~~~lD~E~~~~~~~-------------~~~~~~~------------~~~ 109 (181)
T PF01183_consen 55 YHFARATNSSDAEAQADYFLNQVKGGDPGDLPPALDVEDDKSNNP-------------SKSDNTA------------WVK 109 (181)
T ss_dssp EEE--TTTHCHHHHHHHHHHHCTHTSSTSCS-EEEEE-S-GGCCS-------------SHHHHHH------------HHH
T ss_pred EEEeccCCcccHHHHHHHHHHHhcccCCCcceEEEeccccccCCC-------------CHHHHHH------------HHH
Confidence 334444478899999998755552 2 222346788655411100 0001111 489
Q ss_pred HHHHHHHH-cCCeEEEEeec
Q 011701 122 EVAKKVHD-MGLKFGIHVMK 140 (479)
Q Consensus 122 ~la~~ih~-~Glk~Giy~~p 140 (479)
++.+.|++ .|.++|||+.+
T Consensus 110 ~f~~~~~~~~G~~~~iY~~~ 129 (181)
T PF01183_consen 110 AFLDEVEKAAGYKPGIYTSK 129 (181)
T ss_dssp HHHHHHHHHCTSEEEEEEEH
T ss_pred HHHHHHHHHhCCceeEeecH
Confidence 99999955 99999999876
No 169
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=20.75 E-value=2.1e+02 Score=28.24 Aligned_cols=18 Identities=6% Similarity=-0.049 Sum_probs=16.3
Q ss_pred HHHHHHHHHc-CCeEEEEe
Q 011701 121 TEVAKKVHDM-GLKFGIHV 138 (479)
Q Consensus 121 k~la~~ih~~-Glk~Giy~ 138 (479)
+.+++.+|++ |++.-.|+
T Consensus 219 ~~~V~~~h~~~gl~V~~WT 237 (263)
T cd08580 219 PAAVDCFRRNSKVKIVLFG 237 (263)
T ss_pred HHHHHHHHhcCCcEEEEEE
Confidence 7889999999 99999987
Done!