BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>011703
MNPMGSGELKYIEDSSVPAVEEGLVDFADRMTENADKLMAPVEPKTTLAIELTPENPTTT
FDSLDMDNSSISNIKSSFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSE
AVDNVVSRVFSSIDQTGGSAGSKLTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNG
ASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDPN
DPIVPFVVFLGTSATLWIFYWWWTYGGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRER
DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVM
DADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKSETALTILNEDAEAILE
DINSSPVQFLGFGVGCFAVLYVLLGAGRRRYNLLLLLALVRLFIGGWLHTMMLKILSKM

High Scoring Gene Products

Symbol, full name Information P value
CaS
calcium sensing receptor
protein from Arabidopsis thaliana 6.5e-14

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  011703
        (479 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2178287 - symbol:CaS "calcium sensing receptor...   200  6.5e-14   2


>TAIR|locus:2178287 [details] [associations]
            symbol:CaS "calcium sensing receptor" species:3702
            "Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009535 "chloroplast
            thylakoid membrane" evidence=IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0071277 "cellular response to calcium ion"
            evidence=IMP] [GO:0090333 "regulation of stomatal closure"
            evidence=IMP] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
            [GO:0009704 "de-etiolation" evidence=IMP] [GO:0000023 "maltose
            metabolic process" evidence=RCA] [GO:0006098 "pentose-phosphate
            shunt" evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
            [GO:0006636 "unsaturated fatty acid biosynthetic process"
            evidence=RCA] [GO:0009416 "response to light stimulus"
            evidence=RCA] [GO:0009637 "response to blue light" evidence=RCA]
            [GO:0009657 "plastid organization" evidence=RCA] [GO:0009773
            "photosynthetic electron transport in photosystem I" evidence=RCA]
            [GO:0010114 "response to red light" evidence=RCA] [GO:0010207
            "photosystem II assembly" evidence=RCA] [GO:0010218 "response to
            far red light" evidence=RCA] [GO:0015979 "photosynthesis"
            evidence=RCA] [GO:0015994 "chlorophyll metabolic process"
            evidence=RCA] [GO:0019216 "regulation of lipid metabolic process"
            evidence=RCA] [GO:0019252 "starch biosynthetic process"
            evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
            process, mevalonate-independent pathway" evidence=RCA] [GO:0019344
            "cysteine biosynthetic process" evidence=RCA] [GO:0019684
            "photosynthesis, light reaction" evidence=RCA] [GO:0031408
            "oxylipin biosynthetic process" evidence=RCA] [GO:0043085 "positive
            regulation of catalytic activity" evidence=RCA] PROSITE:PS00380
            PROSITE:PS00683 Pfam:PF00581 GO:GO:0016021 GO:GO:0005739
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0071277 EMBL:AB006708
            Gene3D:3.40.250.10 InterPro:IPR001763 SMART:SM00450 SUPFAM:SSF52821
            PROSITE:PS50206 GO:GO:0090333 GO:GO:0009535 EMBL:AY341888
            EMBL:AY045798 EMBL:AY079331 EMBL:BT000666 IPI:IPI00530400
            RefSeq:NP_197697.1 UniGene:At.24421 UniGene:At.71491
            UniGene:At.74783 ProteinModelPortal:Q9FN48 SMR:Q9FN48 PaxDb:Q9FN48
            PRIDE:Q9FN48 ProMEX:Q9FN48 EnsemblPlants:AT5G23060.1 GeneID:832370
            KEGG:ath:AT5G23060 GeneFarm:3345 TAIR:At5g23060 eggNOG:NOG315676
            HOGENOM:HOG000030520 InParanoid:Q9FN48 OMA:LPSNAKN
            ProtClustDB:CLSN2686105 Genevestigator:Q9FN48 GO:GO:0009704
            Uniprot:Q9FN48
        Length = 387

 Score = 200 (75.5 bits), Expect = 6.5e-14, Sum P(2) = 6.5e-14
 Identities = 45/138 (32%), Positives = 79/138 (57%)

Query:   263 WTYGGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEV 322
             + + GY GDL+P  TL+LL  K N +++D+R E  +E+ GIP L   A+ R  S+ L E+
Sbjct:   212 FNFRGYKGDLTPAQTLDLLCTK-NYLMVDIRSEKDKEKAGIPRLPSNAKNRVISIPLEEL 270

Query:   323 GGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRA 382
                VK ++R  + ++  + A  I  LK +   S +I++D+    +K +A++L+ LG    
Sbjct:   271 PNKVKGIVRNSKRVEAEIAALKISYLKKINKGSNIIILDSYTDSAKIVAKTLKVLGYKNC 330

Query:   383 FLVQGGF---QSWVKEGL 397
             ++V  GF   + W++  L
Sbjct:   331 YIVTDGFSGGRGWLQSRL 348

 Score = 45 (20.9 bits), Expect = 6.5e-14, Sum P(2) = 6.5e-14
 Identities = 15/84 (17%), Positives = 38/84 (45%)

Query:   160 VAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGS 219
             V+++  +  TI  ++E+ ++        +    ++L P +  AL + +    +  +    
Sbjct:    67 VSSLTEVEKTINQVQETGSSVFDATQRVFQVVGDALKPALDTALPIAKQAGEEAMKLASP 126

Query:   220 ALQQVSVAIEGLERSLGFDPNDPI 243
             A  + S   +   +S GFD ++P+
Sbjct:   127 AFSEASKKAQEAMQSSGFD-SEPV 149

 Score = 42 (19.8 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query:    34 NADKLMAPVEPKTTLAIELTPENPTTTFDSLDMDNSSI 71
             NA K +  V  +T+ AIE      ++T D++   + S+
Sbjct:   151 NAAKTVTDVAQQTSKAIEDAKPIASSTMDTISSADPSV 188


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.134   0.383    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      479       440   0.00089  118 3  11 22  0.42    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  229 KB (2125 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  35.68u 0.14s 35.82t   Elapsed:  00:00:01
  Total cpu time:  35.68u 0.14s 35.82t   Elapsed:  00:00:01
  Start:  Sat May 11 08:23:51 2013   End:  Sat May 11 08:23:52 2013

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