BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011703
(479 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FSX|A Chain A, Crystal Structure Of Rv0390 From M. Tuberculosis
Length = 148
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 50/123 (40%), Gaps = 9/123 (7%)
Query: 268 YSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVK 327
Y+GD++P E+L AVL+DVR E G+PDL R + G
Sbjct: 3 YAGDITPLQAWEMLSDNPRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWATSDGTHND 62
Query: 328 KLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQG 387
L EL D + A Q VI + G RS G A + G+ A+ V
Sbjct: 63 NFL---AELRDRIPADAD------QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLD 113
Query: 388 GFQ 390
GF+
Sbjct: 114 GFE 116
>pdb|1QXN|A Chain A, Solution Structure Of The 30 Kda Polysulfide-Sulfur
Transferase Homodimer From Wolinella Succinogenes
pdb|1QXN|B Chain B, Solution Structure Of The 30 Kda Polysulfide-Sulfur
Transferase Homodimer From Wolinella Succinogenes
Length = 137
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 25/126 (19%)
Query: 272 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLR 331
LSPK +LL+ + LIDVR D + G PD++ + K + R
Sbjct: 25 LSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVK-----------------NYKHMSR 67
Query: 332 GGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQS 391
G +L+ L + + K V+V R+ ++LR+ G + +GG
Sbjct: 68 G--KLEPLLAKSGLDPEK------PVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDK 119
Query: 392 WVKEGL 397
W++EGL
Sbjct: 120 WLEEGL 125
>pdb|3GK5|A Chain A, Crystal Structure Of Rhodanese-Related Protein
(Tvg0868615) From Thermoplasma Volcanium, Northeast
Structural Genomics Consortium Target Tvr109a
Length = 108
Score = 34.3 bits (77), Expect = 0.15, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 349 KIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEG 396
KI++ K V+ A G RS L +LG + V+GG QSW++EG
Sbjct: 50 KILERDKKYAVICAHGNRSAAAVEFLSQLG-LNIVDVEGGIQSWIEEG 96
>pdb|1GMX|A Chain A, Escherichia Coli Glpe Sulfurtransferase
Length = 108
Score = 32.3 bits (72), Expect = 0.65, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 355 SKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKE 395
+ V+VM G SKG A+ L + G + + GGF++W ++
Sbjct: 59 TPVMVMXYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQ 99
>pdb|1GN0|A Chain A, Escherichia Coli Glpe Sulfurtransferase Soaked With Kcn
Length = 108
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 355 SKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKE 395
+ V+VM G SKG A+ L + G + + GGF++W ++
Sbjct: 59 TPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQ 99
>pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mn-Amppnp And N-Acetyl Glactosamine
pdb|2A2C|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mg-Adp And N-Acetyl Galactosamine 1-
Phosphate
Length = 478
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 31 MTENADKLMAPVEPKTTLAIELTPENPTTTFDSLDMDNSSISNIKSSFDDF----LAGVN 86
M D L+A VEP T A++L NP S +N I K + ++ L G+
Sbjct: 81 MAVEQDVLIA-VEPVKTYALQLANTNPLYPDFSTSANNIQIDKTKPLWHNYFLCGLKGIQ 139
Query: 87 ESFSSSMIKGENAV 100
E F S + G N +
Sbjct: 140 EHFGLSNLTGMNCL 153
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 292 VRHEDLRERDGIPDLR---RGARFRYASVYLPEVGGSVKKLLR 331
+ H + R + PD+R +G RF + V LPE+ V+KLLR
Sbjct: 182 IEHIEYRSENS-PDVRPYVKGIRFEWVRVDLPEIYKEVRKLLR 223
>pdb|3EYB|A Chain A, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
pdb|3EYB|B Chain B, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
pdb|3EYB|C Chain C, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
pdb|3EYB|D Chain D, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
Length = 219
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 68/165 (41%), Gaps = 22/165 (13%)
Query: 221 LQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSATLWIFYWWWTYGGYSGDLSPKSTLEL 280
+Q+ +A+E + ++ PNDP+ + L W + DL + L
Sbjct: 7 IQEAEMAVEPKDGNMVEQPNDPVTN--ICQAADKQLVTLVEWAKRIPHFSDLPIDDQVIL 64
Query: 281 LRGKENAVLIDV-RHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDT 339
LR N +LI H + +DGI L G +S + VG ++L T
Sbjct: 65 LRAGWNELLIAAFSHRSIDVKDGIL-LASGLHVHRSSAHQAGVGTIFDRVL--------T 115
Query: 340 LTAAVIRNLKIVQDRS-----KVIVM---DADGTRSKGIARSLRK 376
A +R++K+ D++ + IV+ DA G + SLR+
Sbjct: 116 ELVAKMRDMKM--DKTELGCLRAIVLFNPDAKGLTDPSLVESLRE 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,541,432
Number of Sequences: 62578
Number of extensions: 494548
Number of successful extensions: 1492
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1480
Number of HSP's gapped (non-prelim): 22
length of query: 479
length of database: 14,973,337
effective HSP length: 103
effective length of query: 376
effective length of database: 8,527,803
effective search space: 3206453928
effective search space used: 3206453928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)