Query 011705
Match_columns 479
No_of_seqs 398 out of 1579
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 04:19:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011705.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011705hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01533 4RHOD_Repeat_2 Member 99.8 7.6E-20 1.6E-24 157.2 10.3 99 270-396 10-109 (109)
2 cd01518 RHOD_YceA Member of th 99.8 1.8E-19 4E-24 152.6 9.3 98 271-393 3-100 (101)
3 PRK00162 glpE thiosulfate sulf 99.8 4.2E-19 9.2E-24 152.3 9.8 101 270-401 5-105 (108)
4 cd01527 RHOD_YgaP Member of th 99.8 4.8E-19 1E-23 149.1 9.9 97 271-399 3-99 (99)
5 PRK11493 sseA 3-mercaptopyruva 99.8 4E-19 8.7E-24 177.6 8.9 216 160-402 6-280 (281)
6 cd01534 4RHOD_Repeat_3 Member 99.8 9.2E-19 2E-23 147.0 9.2 94 272-394 1-95 (95)
7 PLN02723 3-mercaptopyruvate su 99.8 4.9E-19 1.1E-23 180.5 9.0 214 159-401 22-317 (320)
8 cd01523 RHOD_Lact_B Member of 99.8 9.9E-19 2.1E-23 147.7 9.3 99 272-393 1-99 (100)
9 cd01519 RHOD_HSP67B2 Member of 99.8 7.5E-19 1.6E-23 149.0 7.9 105 273-394 2-106 (106)
10 cd01448 TST_Repeat_1 Thiosulfa 99.8 1.4E-18 3E-23 151.6 9.7 110 272-396 2-122 (122)
11 PLN02160 thiosulfate sulfurtra 99.8 1.5E-18 3.3E-23 156.7 9.9 114 270-403 15-130 (136)
12 PRK07878 molybdopterin biosynt 99.8 7.6E-19 1.7E-23 183.8 9.1 176 188-398 183-387 (392)
13 PRK07411 hypothetical protein; 99.8 1.1E-18 2.3E-23 182.7 8.4 178 189-399 176-386 (390)
14 cd01521 RHOD_PspE2 Member of t 99.8 4.4E-18 9.6E-23 146.8 10.5 101 269-399 7-110 (110)
15 cd01449 TST_Repeat_2 Thiosulfa 99.8 1.8E-18 3.8E-23 149.6 7.9 107 272-394 1-118 (118)
16 cd01444 GlpE_ST GlpE sulfurtra 99.7 4.1E-18 9E-23 141.7 9.0 93 271-393 1-95 (96)
17 cd01526 RHOD_ThiF Member of th 99.7 5.7E-18 1.2E-22 148.9 9.3 110 270-399 8-118 (122)
18 cd01525 RHOD_Kc Member of the 99.7 8E-18 1.7E-22 142.7 9.5 100 272-393 1-104 (105)
19 cd01535 4RHOD_Repeat_4 Member 99.7 1E-17 2.2E-22 153.0 10.8 98 277-404 2-99 (145)
20 cd01528 RHOD_2 Member of the R 99.7 1.3E-17 2.7E-22 141.4 10.0 97 271-394 1-98 (101)
21 TIGR03865 PQQ_CXXCW PQQ-depend 99.7 1.5E-17 3.3E-22 154.5 11.2 110 270-399 36-162 (162)
22 PRK09629 bifunctional thiosulf 99.7 7E-18 1.5E-22 185.4 10.2 214 160-402 10-272 (610)
23 cd01520 RHOD_YbbB Member of th 99.7 2.6E-17 5.6E-22 146.2 11.1 105 272-394 1-126 (128)
24 cd01447 Polysulfide_ST Polysul 99.7 1.5E-17 3.2E-22 139.9 8.6 102 272-396 1-103 (103)
25 COG2897 SseA Rhodanese-related 99.7 1.5E-17 3.3E-22 167.4 10.0 215 159-402 11-283 (285)
26 KOG1530 Rhodanese-related sulf 99.7 1.9E-17 4.2E-22 148.1 9.2 116 267-400 20-135 (136)
27 smart00450 RHOD Rhodanese Homo 99.7 2E-17 4.4E-22 135.3 8.5 99 284-398 2-100 (100)
28 cd01524 RHOD_Pyr_redox Member 99.7 2.3E-17 5E-22 137.2 8.8 89 272-393 1-89 (90)
29 KOG2017 Molybdopterin synthase 99.7 3E-18 6.6E-23 174.0 4.2 183 183-395 196-419 (427)
30 PRK11493 sseA 3-mercaptopyruva 99.7 2.3E-17 5E-22 164.9 9.8 119 271-404 6-138 (281)
31 PF00581 Rhodanese: Rhodanese- 99.7 6.9E-17 1.5E-21 136.4 11.1 108 273-395 1-113 (113)
32 PLN02723 3-mercaptopyruvate su 99.7 5E-17 1.1E-21 165.8 10.3 119 270-403 22-153 (320)
33 cd01530 Cdc25 Cdc25 phosphatas 99.7 6.1E-17 1.3E-21 143.2 9.4 99 271-393 3-120 (121)
34 cd01445 TST_Repeats Thiosulfat 99.7 7.6E-17 1.7E-21 146.0 9.0 108 272-393 1-137 (138)
35 cd01522 RHOD_1 Member of the R 99.7 7.2E-17 1.6E-21 141.4 7.7 104 272-395 1-105 (117)
36 COG0607 PspE Rhodanese-related 99.7 1.4E-16 3.1E-21 134.9 8.8 95 279-401 13-108 (110)
37 cd01529 4RHOD_Repeats Member o 99.7 1.4E-16 3.1E-21 133.8 8.6 87 284-394 10-96 (96)
38 PRK09629 bifunctional thiosulf 99.7 1.2E-16 2.6E-21 175.7 10.6 120 270-404 9-132 (610)
39 PRK05597 molybdopterin biosynt 99.7 2.7E-17 5.8E-22 170.2 5.0 169 189-395 166-355 (355)
40 cd01532 4RHOD_Repeat_1 Member 99.7 1.2E-16 2.6E-21 133.9 7.9 84 283-394 7-92 (92)
41 cd01531 Acr2p Eukaryotic arsen 99.7 5.1E-16 1.1E-20 134.4 10.1 100 271-395 3-112 (113)
42 PRK08762 molybdopterin biosynt 99.6 6E-16 1.3E-20 161.0 10.4 105 270-404 3-107 (376)
43 PRK05600 thiamine biosynthesis 99.6 1.6E-16 3.5E-21 165.4 4.4 168 189-390 182-369 (370)
44 cd00158 RHOD Rhodanese Homolog 99.6 8.7E-16 1.9E-20 124.4 7.4 88 277-393 2-89 (89)
45 PRK01415 hypothetical protein; 99.6 2.1E-15 4.6E-20 149.3 10.3 102 270-396 112-213 (247)
46 COG2897 SseA Rhodanese-related 99.6 2.4E-15 5.1E-20 151.6 9.9 120 271-405 12-142 (285)
47 cd01443 Cdc25_Acr2p Cdc25 enzy 99.6 2.5E-15 5.4E-20 130.3 8.6 98 271-393 3-112 (113)
48 TIGR02981 phageshock_pspE phag 99.6 3.2E-15 6.9E-20 129.0 9.1 81 285-394 17-97 (101)
49 PRK05320 rhodanese superfamily 99.6 5E-15 1.1E-19 147.4 10.1 102 270-395 110-216 (257)
50 PRK10287 thiosulfate:cyanide s 99.6 7.9E-15 1.7E-19 127.3 8.0 82 284-394 18-99 (104)
51 PRK00142 putative rhodanese-re 99.6 1.1E-14 2.4E-19 148.7 10.4 101 270-395 112-212 (314)
52 cd01446 DSP_MapKP N-terminal r 99.5 3.9E-13 8.4E-18 119.5 10.2 106 271-394 1-126 (132)
53 PRK11784 tRNA 2-selenouridine 99.4 2.9E-13 6.3E-18 140.0 10.7 113 273-401 4-135 (345)
54 TIGR03167 tRNA_sel_U_synt tRNA 99.4 9.9E-13 2.1E-17 134.4 10.1 104 286-402 2-122 (311)
55 KOG1529 Mercaptopyruvate sulfu 99.1 6.6E-10 1.4E-14 111.4 10.4 122 271-404 6-139 (286)
56 PRK01269 tRNA s(4)U8 sulfurtra 99.0 2.8E-10 6.1E-15 122.5 7.7 81 275-387 398-482 (482)
57 COG1054 Predicted sulfurtransf 99.0 3.4E-10 7.4E-15 114.1 5.8 99 271-394 114-212 (308)
58 KOG1529 Mercaptopyruvate sulfu 98.7 6.2E-08 1.3E-12 97.4 8.4 94 285-394 171-275 (286)
59 KOG3772 M-phase inducer phosph 98.4 3.3E-07 7.1E-12 93.9 6.9 104 270-396 156-277 (325)
60 COG5105 MIH1 Mitotic inducer, 97.1 0.00098 2.1E-08 68.6 6.1 98 270-394 242-357 (427)
61 PF05237 MoeZ_MoeB: MoeZ/MoeB 95.3 0.0027 5.9E-08 53.1 -1.4 46 189-237 3-48 (84)
62 COG2603 Predicted ATPase [Gene 94.6 0.047 1E-06 56.0 4.9 100 285-393 14-127 (334)
63 PF04273 DUF442: Putative phos 93.6 0.13 2.8E-06 45.5 5.1 87 270-373 13-105 (110)
64 TIGR01244 conserved hypothetic 93.3 0.23 5.1E-06 44.9 6.5 94 270-380 13-113 (135)
65 PRK07688 thiamine/molybdopteri 91.6 0.055 1.2E-06 56.4 0.1 115 189-307 164-318 (339)
66 KOG1093 Predicted protein kina 87.9 0.18 4E-06 55.8 0.5 96 270-391 622-717 (725)
67 KOG1717 Dual specificity phosp 84.0 0.9 2E-05 46.4 3.1 100 272-394 6-123 (343)
68 PRK08223 hypothetical protein; 81.6 0.87 1.9E-05 46.8 2.0 52 183-237 160-240 (287)
69 PRK00142 putative rhodanese-re 80.5 0.29 6.2E-06 50.7 -1.9 53 268-330 12-64 (314)
70 cd00127 DSPc Dual specificity 79.2 5.9 0.00013 34.6 6.3 28 352-379 79-109 (139)
71 PF13350 Y_phosphatase3: Tyros 77.8 10 0.00022 35.0 7.7 31 270-301 28-58 (164)
72 cd01445 TST_Repeats Thiosulfat 71.3 4.2 9.1E-05 36.9 3.3 76 161-245 1-100 (138)
73 PF01442 Apolipoprotein: Apoli 66.2 4 8.7E-05 37.3 2.1 10 167-176 110-119 (202)
74 TIGR03167 tRNA_sel_U_synt tRNA 65.6 12 0.00027 38.7 5.8 33 271-304 137-172 (311)
75 COG3453 Uncharacterized protei 64.8 21 0.00046 32.6 6.2 85 269-373 13-106 (130)
76 COG0476 ThiF Dinucleotide-util 61.2 7.1 0.00015 38.6 3.0 56 179-237 157-217 (254)
77 KOG3636 Uncharacterized conser 58.8 32 0.00069 37.9 7.4 91 286-393 326-427 (669)
78 PF01451 LMWPc: Low molecular 56.5 9.3 0.0002 33.9 2.6 36 357-392 1-41 (138)
79 COG2117 Predicted subunit of t 55.7 35 0.00076 32.9 6.3 78 357-437 3-90 (198)
80 PRK05690 molybdopterin biosynt 54.7 8.7 0.00019 38.2 2.3 46 189-237 171-216 (245)
81 PF05957 DUF883: Bacterial pro 52.1 41 0.0009 28.4 5.8 62 70-131 6-67 (94)
82 PRK12475 thiamine/molybdopteri 52.0 6.9 0.00015 40.9 1.2 46 188-236 163-208 (338)
83 COG2085 Predicted dinucleotide 50.0 78 0.0017 31.4 8.0 93 275-380 78-174 (211)
84 PF09992 DUF2233: Predicted pe 49.3 23 0.00051 32.6 4.1 41 352-392 98-143 (170)
85 TIGR02356 adenyl_thiF thiazole 48.5 11 0.00025 36.2 2.0 40 189-231 160-199 (202)
86 PRK08762 molybdopterin biosynt 48.4 9.3 0.0002 40.3 1.5 46 189-237 277-324 (376)
87 PF03853 YjeF_N: YjeF-related 47.8 29 0.00063 32.4 4.6 32 352-384 23-57 (169)
88 TIGR02355 moeB molybdopterin s 47.1 14 0.0003 36.8 2.4 46 189-237 163-208 (240)
89 PLN02727 NAD kinase 45.8 38 0.00083 40.3 5.9 92 270-375 267-364 (986)
90 COG2519 GCD14 tRNA(1-methylade 44.5 20 0.00043 36.5 3.1 32 352-383 186-217 (256)
91 smart00226 LMWPc Low molecular 41.8 27 0.00059 31.1 3.2 36 357-392 1-37 (140)
92 PF02590 SPOUT_MTase: Predicte 41.3 75 0.0016 29.8 6.2 46 347-392 60-110 (155)
93 PLN02777 photosystem I P subun 40.6 68 0.0015 30.7 5.7 30 448-477 124-153 (167)
94 smart00195 DSPc Dual specifici 40.5 88 0.0019 27.4 6.3 28 352-379 76-106 (138)
95 COG0062 Uncharacterized conser 40.0 48 0.001 32.6 4.8 31 354-385 49-82 (203)
96 PF00782 DSPc: Dual specificit 39.6 66 0.0014 27.9 5.3 28 352-379 71-101 (133)
97 PF14159 CAAD: CAAD domains of 38.3 48 0.001 28.4 4.0 30 448-477 49-78 (90)
98 PLN03050 pyridoxine (pyridoxam 38.1 48 0.001 33.3 4.7 31 354-385 60-93 (246)
99 PF06152 Phage_min_cap2: Phage 35.1 1.7E+02 0.0038 31.0 8.5 57 76-132 124-180 (361)
100 PF05706 CDKN3: Cyclin-depende 34.8 63 0.0014 31.0 4.6 27 352-378 131-159 (168)
101 KOG0781 Signal recognition par 34.1 3.3E+02 0.0071 30.7 10.3 146 72-236 271-437 (587)
102 PRK12361 hypothetical protein; 33.4 2.3E+02 0.0049 31.5 9.4 24 352-375 173-198 (547)
103 PF13344 Hydrolase_6: Haloacid 32.9 67 0.0014 27.5 4.1 29 352-380 28-57 (101)
104 PRK10126 tyrosine phosphatase; 32.2 53 0.0011 29.9 3.6 37 355-392 3-40 (147)
105 PRK10565 putative carbohydrate 31.7 66 0.0014 35.7 4.8 33 352-385 58-93 (508)
106 TIGR00197 yjeF_nterm yjeF N-te 31.7 73 0.0016 30.8 4.6 33 352-385 43-78 (205)
107 TIGR03603 cyclo_dehy_ocin bact 31.2 20 0.00043 37.3 0.7 41 188-231 200-256 (318)
108 PF05957 DUF883: Bacterial pro 30.2 1.4E+02 0.003 25.2 5.6 13 166-178 58-70 (94)
109 TIGR02689 ars_reduc_gluta arse 29.1 85 0.0018 27.8 4.3 34 356-389 2-36 (126)
110 PRK01565 thiamine biosynthesis 28.5 77 0.0017 33.8 4.6 29 352-380 174-202 (394)
111 PF09718 Tape_meas_lam_C: Lamb 28.1 1.9E+02 0.0041 23.6 5.9 42 76-117 6-47 (78)
112 KOG0333 U5 snRNP-like RNA heli 27.6 97 0.0021 35.0 5.1 36 353-389 516-551 (673)
113 PF07464 ApoLp-III: Apolipopho 27.4 1.7E+02 0.0036 27.7 6.0 45 92-136 31-75 (155)
114 PRK11391 etp phosphotyrosine-p 27.2 73 0.0016 29.1 3.6 37 355-392 3-40 (144)
115 PLN03049 pyridoxine (pyridoxam 27.0 89 0.0019 34.3 4.8 31 354-385 59-92 (462)
116 TIGR00342 thiazole biosynthesi 26.2 1E+02 0.0022 32.7 4.9 31 352-383 170-200 (371)
117 cd02071 MM_CoA_mut_B12_BD meth 26.1 1.6E+02 0.0034 25.9 5.4 44 354-397 50-103 (122)
118 PRK00103 rRNA large subunit me 25.6 82 0.0018 29.6 3.7 44 349-392 62-110 (157)
119 cd00115 LMWPc Substituted upda 25.1 64 0.0014 28.8 2.8 37 356-392 2-40 (141)
120 PLN03094 Substrate binding sub 25.0 1.9E+02 0.0042 31.0 6.7 10 48-57 186-195 (370)
121 PRK08328 hypothetical protein; 24.8 35 0.00076 33.6 1.1 43 189-237 166-208 (231)
122 PRK08384 thiamine biosynthesis 23.7 1.1E+02 0.0023 33.0 4.5 28 353-380 179-206 (381)
123 PLN02918 pyridoxine (pyridoxam 23.7 1.1E+02 0.0024 34.4 4.8 31 354-385 135-168 (544)
124 COG0647 NagD Predicted sugar p 22.5 1.3E+02 0.0028 30.9 4.6 24 378-401 90-115 (269)
125 PF02302 PTS_IIB: PTS system, 21.6 1.1E+02 0.0024 24.8 3.3 32 356-388 1-37 (90)
126 PRK13530 arsenate reductase; P 20.9 1.5E+02 0.0033 26.6 4.3 35 355-389 4-39 (133)
127 PF07755 DUF1611: Protein of u 20.8 1.9E+02 0.0042 30.1 5.6 45 356-401 114-165 (301)
No 1
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.81 E-value=7.6e-20 Score=157.21 Aligned_cols=99 Identities=26% Similarity=0.217 Sum_probs=84.2
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHHHHHHhhhc
Q 011705 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (479)
Q Consensus 270 g~ISp~El~elL~~~~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGIs~Lk 349 (479)
..++++++.++++.+++.+|||||++.||..+|||||+ |+|+.++...+..+ +.
T Consensus 10 ~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgai--------nip~~~l~~~~~~l--------------~~---- 63 (109)
T cd01533 10 PSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSV--------SCPGAELVLRVGEL--------------AP---- 63 (109)
T ss_pred CcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCce--------eCCHHHHHHHHHhc--------------CC----
Confidence 46999999999865456899999999999999999999 99986654433321 11
Q ss_pred cCCCCcEEEEEeCCCchHHHHHHHHHHccCCC-EEEecccHHHHHHcC
Q 011705 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMR-AFLVQGGFQSWVKEG 396 (479)
Q Consensus 350 ~~~kd~~IVVyC~sG~rS~~AA~~L~~~Gf~n-V~vL~GG~~aW~aaG 396 (479)
+++++||+||++|.||..+++.|+.+||++ |++|+||+.+|.++|
T Consensus 64 --~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 64 --DPRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred --CCCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 567899999999999999999999999998 999999999999876
No 2
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.80 E-value=1.8e-19 Score=152.63 Aligned_cols=98 Identities=21% Similarity=0.263 Sum_probs=81.6
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHHHHHHhhhcc
Q 011705 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (479)
Q Consensus 271 ~ISp~El~elL~~~~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGIs~Lk~ 350 (479)
.|+++++.+++. +++.+|||||++.||..+|||||+ |+|+.++...... +... ..
T Consensus 3 ~is~~~l~~~~~-~~~~~iiDvR~~~e~~~ghi~gA~--------~ip~~~~~~~~~~-------~~~~---------~~ 57 (101)
T cd01518 3 YLSPAEWNELLE-DPEVVLLDVRNDYEYDIGHFKGAV--------NPDVDTFREFPFW-------LDEN---------LD 57 (101)
T ss_pred cCCHHHHHHHHc-CCCEEEEEcCChhhhhcCEecccc--------CCCcccHhHhHHH-------HHhh---------hh
Confidence 589999999985 567899999999999999999999 9998765432211 1110 01
Q ss_pred CCCCcEEEEEeCCCchHHHHHHHHHHccCCCEEEecccHHHHH
Q 011705 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (479)
Q Consensus 351 ~~kd~~IVVyC~sG~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~ 393 (479)
.+++++||+||++|.||..+++.|+.+||++|++|+||+.+|.
T Consensus 58 ~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~ 100 (101)
T cd01518 58 LLKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGILKYL 100 (101)
T ss_pred hcCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHHHHh
Confidence 2688999999999999999999999999999999999999996
No 3
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.79 E-value=4.2e-19 Score=152.34 Aligned_cols=101 Identities=21% Similarity=0.306 Sum_probs=87.8
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHHHHHHhhhc
Q 011705 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (479)
Q Consensus 270 g~ISp~El~elL~~~~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGIs~Lk 349 (479)
..++++++.+++. +.++++||+|++.||..+|||||+ |+|+..+...+..
T Consensus 5 ~~is~~el~~~l~-~~~~~ivDvR~~~e~~~ghi~gA~--------~ip~~~l~~~~~~--------------------- 54 (108)
T PRK00162 5 ECINVEQAHQKLQ-EGGAVLVDIRDPQSFAMGHAPGAF--------HLTNDSLGAFMRQ--------------------- 54 (108)
T ss_pred cccCHHHHHHHHH-cCCCEEEEcCCHHHHhcCCCCCCe--------ECCHHHHHHHHHh---------------------
Confidence 4699999999984 456899999999999999999998 8887554433221
Q ss_pred cCCCCcEEEEEeCCCchHHHHHHHHHHccCCCEEEecccHHHHHHcCCCccc
Q 011705 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKE 401 (479)
Q Consensus 350 ~~~kd~~IVVyC~sG~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~aaGLPV~~ 401 (479)
+++++++++||.+|.+|..++..|+..||+++++++||+.+|++.++|++.
T Consensus 55 -~~~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~ 105 (108)
T PRK00162 55 -ADFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVA 105 (108)
T ss_pred -cCCCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHHHHHhcCCCccC
Confidence 267889999999999999999999999999999999999999999999875
No 4
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.79 E-value=4.8e-19 Score=149.10 Aligned_cols=97 Identities=29% Similarity=0.479 Sum_probs=84.2
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHHHHHHhhhcc
Q 011705 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (479)
Q Consensus 271 ~ISp~El~elL~~~~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGIs~Lk~ 350 (479)
.++++++.+++.. +.+|||+|++.||..+|||||+ |+|+.++..... .
T Consensus 3 ~i~~~el~~~~~~--~~~liDvR~~~e~~~~hi~ga~--------~ip~~~~~~~~~----------------------~ 50 (99)
T cd01527 3 TISPNDACELLAQ--GAVLVDIREPDEYLRERIPGAR--------LVPLSQLESEGL----------------------P 50 (99)
T ss_pred ccCHHHHHHHHHC--CCEEEECCCHHHHHhCcCCCCE--------ECChhHhccccc----------------------C
Confidence 6899999999853 3899999999999999999999 888766543211 1
Q ss_pred CCCCcEEEEEeCCCchHHHHHHHHHHccCCCEEEecccHHHHHHcCCCc
Q 011705 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 399 (479)
Q Consensus 351 ~~kd~~IVVyC~sG~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~aaGLPV 399 (479)
.+++++||+||++|.||..+++.|++.||++++++.||+.+|+..|+|+
T Consensus 51 ~~~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 51 LVGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred CCCCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence 2678999999999999999999999999999999999999999999874
No 5
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.78 E-value=4e-19 Score=177.57 Aligned_cols=216 Identities=17% Similarity=0.185 Sum_probs=145.1
Q ss_pred chhHHHHHHHHHHhhhhcccCcc----------eEEEeeccCCCCCCCchHHHhhhhhHhhhhhcccccchHHHHHHHHH
Q 011705 160 VAAVDVLRNTIVALEESMTNGAS----------FVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIE 229 (479)
Q Consensus 160 ~~~~d~l~~~~~~~~~~~~~~~~----------~~~~~~G~~~~~l~p~~~~~~~~~e~~~~~v~~p~g~~~~qv~~~le 229 (479)
-|+.++|++.+..-+-.|.|.|+ .-.|.-||+++.+.-+...... . ..|+...+. ....++
T Consensus 6 lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~----~----~~~~~~~~~-~~~~~~ 76 (281)
T PRK11493 6 FVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSD----H----TSPLPHMMP-RPETFA 76 (281)
T ss_pred ccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcC----C----CCCCCCCCC-CHHHHH
Confidence 36789999998655556899986 3467789999877655443210 0 111111111 123455
Q ss_pred HHHHhcCCCCCCCcchhhHHhhhhhhHHHHHHH-----------------HHhcCCC---C-----------------cc
Q 011705 230 GLERSLGFDPNDPIVPFVVFLGTSATLWIFYWW-----------------WTYGGYS---G-----------------DL 272 (479)
Q Consensus 230 ~l~~~lg~~~~~PvL~~~v~~g~~~al~l~~~l-----------------~~~~~~~---g-----------------~I 272 (479)
.+.+.+|++.++||+++.--- ...+..+++.+ |...++. . ..
T Consensus 77 ~~~~~~Gi~~d~~VVvyc~~~-~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~ 155 (281)
T PRK11493 77 VAMRELGVNQDKHLVVYDEGN-LFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEGAVELPEGEFNAAFNPEAVV 155 (281)
T ss_pred HHHHHcCCCCCCEEEEECCCC-CchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCCCCCCCCCcccccCCcccee
Confidence 556668999999997543210 10111111112 3222221 0 11
Q ss_pred CHHHHHHHHhCCCCcEEEEcCChhhhh-----------hcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHH
Q 011705 273 SPKSTLELLRGKENAVLIDVRHEDLRE-----------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLT 341 (479)
Q Consensus 273 Sp~El~elL~~~~~~vLIDVRs~~Ef~-----------~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~ 341 (479)
+.+++...+ ++++.+|||+|++.||. .||||||+ |+|+.++... ..++++++++..+.
T Consensus 156 ~~~~v~~~~-~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~--------~i~~~~~~~~--~~~~~~~~l~~~~~ 224 (281)
T PRK11493 156 RLTDVLLAS-HEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGAL--------NVPWTELVRE--GELKTTDELDAIFF 224 (281)
T ss_pred cHHHHHHhh-cCCCcEEEeCCCccceeeeccCCCCCcccccCCCcC--------CCCHHHhcCC--CCcCCHHHHHHHHH
Confidence 223444444 34568999999999994 69999999 8887665432 23456777888888
Q ss_pred HHHHhhhccCCCCcEEEEEeCCCchHHHHHHHHHHccCCCEEEecccHHHHHH-cCCCcccc
Q 011705 342 AAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK-EGLRIKEL 402 (479)
Q Consensus 342 alGIs~Lk~~~kd~~IVVyC~sG~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~a-aGLPV~~~ 402 (479)
+.|+ +++++||+||++|.||..++..|+.+||++|++|+||+.+|.. .++|++.+
T Consensus 225 ~~g~------~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~~~ 280 (281)
T PRK11493 225 GRGV------SFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARADLPVEPA 280 (281)
T ss_pred hcCC------CCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcCCC
Confidence 8888 7889999999999999999999999999999999999999998 79998764
No 6
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.77 E-value=9.2e-19 Score=146.97 Aligned_cols=94 Identities=16% Similarity=0.264 Sum_probs=77.8
Q ss_pred cCHHHHHHHHhCC-CCcEEEEcCChhhhhhcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHHHHHHhhhcc
Q 011705 272 LSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (479)
Q Consensus 272 ISp~El~elL~~~-~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGIs~Lk~ 350 (479)
|+++|+.+++.++ ++.+|||||++.||..+|||||+ |+|+.++......+.
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~--------~ip~~~l~~~~~~~~-------------------- 52 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFR--------HTPGGQLVQETDHFA-------------------- 52 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcE--------eCCHHHHHHHHHHhc--------------------
Confidence 6889999998654 36789999999999999999999 898765543222210
Q ss_pred CCCCcEEEEEeCCCchHHHHHHHHHHccCCCEEEecccHHHHHH
Q 011705 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (479)
Q Consensus 351 ~~kd~~IVVyC~sG~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~a 394 (479)
..++++||+||.+|.||..++..|+.+||+ |++|+||+.+|.+
T Consensus 53 ~~~~~~iv~~c~~G~rs~~aa~~L~~~G~~-v~~l~GG~~~W~~ 95 (95)
T cd01534 53 PVRGARIVLADDDGVRADMTASWLAQMGWE-VYVLEGGLAAALA 95 (95)
T ss_pred ccCCCeEEEECCCCChHHHHHHHHHHcCCE-EEEecCcHHHhcC
Confidence 135789999999999999999999999998 9999999999963
No 7
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.77 E-value=4.9e-19 Score=180.53 Aligned_cols=214 Identities=16% Similarity=0.238 Sum_probs=147.9
Q ss_pred cchhHHHHHHHHHHhhhhcccCc---------ceEEEeeccCCCCCCCchHHHhhhhhHhhhhhcccccchHHHHHHHHH
Q 011705 159 TVAAVDVLRNTIVALEESMTNGA---------SFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIE 229 (479)
Q Consensus 159 ~~~~~d~l~~~~~~~~~~~~~~~---------~~~~~~~G~~~~~l~p~~~~~~~~~e~~~~~v~~p~g~~~~qv~~~le 229 (479)
.-|+.|||++.+..-+-.|.|.| +...|.-||++..+.-++.+..... .+....+. ..+.|+
T Consensus 22 ~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~--------~~~~~~lp-~~~~~~ 92 (320)
T PLN02723 22 PVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRT--------TDLPHMLP-SEEAFA 92 (320)
T ss_pred ceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCC--------CCcCCCCC-CHHHHH
Confidence 35778999998865444577764 1246788999999887665432111 11111111 124455
Q ss_pred HHHHhcCCCCCCCcchhhHHhhhhhhHHH---HHHH-----------------HHhcCCC---C----------------
Q 011705 230 GLERSLGFDPNDPIVPFVVFLGTSATLWI---FYWW-----------------WTYGGYS---G---------------- 270 (479)
Q Consensus 230 ~l~~~lg~~~~~PvL~~~v~~g~~~al~l---~~~l-----------------~~~~~~~---g---------------- 270 (479)
.+.+.+|+.+++||+++ +..+.... +|.+ |...++. +
T Consensus 93 ~~l~~~Gi~~~~~VVvY----~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~~~~~~~~~~~~~~~~ 168 (320)
T PLN02723 93 AAVSALGIENKDGVVVY----DGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESSASGDAILKASAASEAI 168 (320)
T ss_pred HHHHHcCCCCCCEEEEE----cCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccCCCcccccccccccccc
Confidence 66677899999999754 22221111 1112 3222210 0
Q ss_pred ----------------------ccCHHHHHHHHhCCCCcEEEEcCChhhh-----------hhcCCCCcccccccccccc
Q 011705 271 ----------------------DLSPKSTLELLRGKENAVLIDVRHEDLR-----------ERDGIPDLRRGARFRYASV 317 (479)
Q Consensus 271 ----------------------~ISp~El~elL~~~~~~vLIDVRs~~Ef-----------~~gHIPGA~~av~~~~~nI 317 (479)
.++.+++.+.+. +++.+|||+|++.|| +.||||||+ |+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAv--------ni 239 (320)
T PLN02723 169 EKVYQGQTVSPITFQTKFQPHLVWTLEQVKKNIE-DKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSK--------CV 239 (320)
T ss_pred ccccccCCCCCCcccccCCccceecHHHHHHhhc-CCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCc--------cc
Confidence 035677777773 567899999999888 569999999 88
Q ss_pred CcccccchhHhhhcCchhhhHHHHHHHHhhhccCCCCcEEEEEeCCCchHHHHHHHHHHccCCCEEEecccHHHHHHc-C
Q 011705 318 YLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKE-G 396 (479)
Q Consensus 318 Pl~el~~~l~~ll~~~~~L~~ll~alGIs~Lk~~~kd~~IVVyC~sG~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~aa-G 396 (479)
|+.++.+.- ..+++++++++.+.++|+ +++++||+||.+|.||..++..|+.+||++|++|+|||.+|... .
T Consensus 240 p~~~~~~~~-~~~~~~~el~~~~~~~gi------~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~ 312 (320)
T PLN02723 240 PFPQMLDSS-QTLLPAEELKKRFEQEGI------SLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALPD 312 (320)
T ss_pred CHHHhcCCC-CCCCCHHHHHHHHHhcCC------CCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCC
Confidence 876554332 245678889998988888 78999999999999999999999999999999999999999874 6
Q ss_pred CCccc
Q 011705 397 LRIKE 401 (479)
Q Consensus 397 LPV~~ 401 (479)
+|++.
T Consensus 313 ~Pv~~ 317 (320)
T PLN02723 313 TPVAT 317 (320)
T ss_pred CCccC
Confidence 77765
No 8
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.77 E-value=9.9e-19 Score=147.68 Aligned_cols=99 Identities=23% Similarity=0.256 Sum_probs=80.2
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHHHHHHhhhccC
Q 011705 272 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIV 351 (479)
Q Consensus 272 ISp~El~elL~~~~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGIs~Lk~~ 351 (479)
|+++++.+++.++++++|||||++.||+.+|||||+ |+|+.++....... ..+. +..+
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~--------~ip~~~~~~~~~~~------~~~~--------~~~~ 58 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGEN--------NTPYFDPYFDFLEI------EEDI--------LDQL 58 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCc--------ccccccchHHHHHh------hHHH--------HhhC
Confidence 688999999976567899999999999999999999 88876654322000 0000 1123
Q ss_pred CCCcEEEEEeCCCchHHHHHHHHHHccCCCEEEecccHHHHH
Q 011705 352 QDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (479)
Q Consensus 352 ~kd~~IVVyC~sG~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~ 393 (479)
+++++||+||++|.||..++..|+..||+ +++|.||+.+|.
T Consensus 59 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 59 PDDQEVTVICAKEGSSQFVAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcCce-eEEeCCcHHhhc
Confidence 78899999999999999999999999998 999999999996
No 9
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.77 E-value=7.5e-19 Score=148.99 Aligned_cols=105 Identities=24% Similarity=0.279 Sum_probs=84.1
Q ss_pred CHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHHHHHHhhhccCC
Q 011705 273 SPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQ 352 (479)
Q Consensus 273 Sp~El~elL~~~~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGIs~Lk~~~ 352 (479)
+++++.++++.+++.+|||+|++.||..||||||+ |+|+.++.+. ...+++.+.+.+...++ +
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~--------~ip~~~~~~~---~~~~~~~~~~~~~~~~~------~ 64 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAI--------NIPLSSLPDA---LALSEEEFEKKYGFPKP------S 64 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcE--------EechHHhhhh---hCCCHHHHHHHhcccCC------C
Confidence 67888888742567999999999999999999998 8887665432 12233344444444444 6
Q ss_pred CCcEEEEEeCCCchHHHHHHHHHHccCCCEEEecccHHHHHH
Q 011705 353 DRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (479)
Q Consensus 353 kd~~IVVyC~sG~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~a 394 (479)
++++||+||++|.+|..+++.|+.+||++|++++||+.+|.+
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~~W~~ 106 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWLDWAA 106 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHHHHcC
Confidence 789999999999999999999999999999999999999963
No 10
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.77 E-value=1.4e-18 Score=151.55 Aligned_cols=110 Identities=25% Similarity=0.300 Sum_probs=92.2
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCCh-------hhhhhcCCCCccccccccccccCcccccch---hHhhhcCchhhhHHHH
Q 011705 272 LSPKSTLELLRGKENAVLIDVRHE-------DLRERDGIPDLRRGARFRYASVYLPEVGGS---VKKLLRGGRELDDTLT 341 (479)
Q Consensus 272 ISp~El~elL~~~~~~vLIDVRs~-------~Ef~~gHIPGA~~av~~~~~nIPl~el~~~---l~~ll~~~~~L~~ll~ 341 (479)
++++++.+++. +++.+|||+|++ .+|..+|||||+ |+|+.++... ....+++++++.+.+.
T Consensus 2 i~~~~l~~~l~-~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~--------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd01448 2 VSPDWLAEHLD-DPDVRILDARWYLPDRDGRKEYLEGHIPGAV--------FFDLDEDLDDKSPGPHMLPSPEEFAELLG 72 (122)
T ss_pred cCHHHHHHHhC-CCCeEEEEeecCCCCCchhhHHhhCCCCCCE--------EcChhhccccCCCCCCCCCCHHHHHHHHH
Confidence 78999999985 467899999999 999999999998 8887655432 2334566677777776
Q ss_pred HHHHhhhccCCCCcEEEEEeCC-CchHHHHHHHHHHccCCCEEEecccHHHHHHcC
Q 011705 342 AAVIRNLKIVQDRSKVIVMDAD-GTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEG 396 (479)
Q Consensus 342 alGIs~Lk~~~kd~~IVVyC~s-G~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~aaG 396 (479)
..++ +++++||+||++ |.++..+++.|+.+||++|++|+||+.+|.++|
T Consensus 73 ~~~~------~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 73 SLGI------SNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred HcCC------CCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 6666 789999999999 489999999999999999999999999998865
No 11
>PLN02160 thiosulfate sulfurtransferase
Probab=99.77 E-value=1.5e-18 Score=156.70 Aligned_cols=114 Identities=17% Similarity=0.225 Sum_probs=88.0
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCCc--cccccccccccCcccccchhHhhhcCchhhhHHHHHHHHhh
Q 011705 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDL--RRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRN 347 (479)
Q Consensus 270 g~ISp~El~elL~~~~~~vLIDVRs~~Ef~~gHIPGA--~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGIs~ 347 (479)
..++++++.+++++ +.+|||||++.||..|||||| + |+|+..+.. ... +.+++++.... .
T Consensus 15 ~~i~~~e~~~~~~~--~~~lIDVR~~~E~~~ghIpgA~~i--------niP~~~~~~-~~~-l~~~~~~~~~~-~----- 76 (136)
T PLN02160 15 VSVDVSQAKTLLQS--GHQYLDVRTQDEFRRGHCEAAKIV--------NIPYMLNTP-QGR-VKNQEFLEQVS-S----- 76 (136)
T ss_pred eEeCHHHHHHHHhC--CCEEEECCCHHHHhcCCCCCccee--------cccchhcCc-ccc-cCCHHHHHHHH-h-----
Confidence 46899999999853 468999999999999999999 6 677533211 111 11222222111 0
Q ss_pred hccCCCCcEEEEEeCCCchHHHHHHHHHHccCCCEEEecccHHHHHHcCCCccccc
Q 011705 348 LKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELK 403 (479)
Q Consensus 348 Lk~~~kd~~IVVyC~sG~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~aaGLPV~~~~ 403 (479)
.++++++||+||++|.||..++..|...||++|++|.||+.+|.++|+|+.+..
T Consensus 77 --~~~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~ 130 (136)
T PLN02160 77 --LLNPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQEE 130 (136)
T ss_pred --ccCCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccccc
Confidence 126788999999999999999999999999999999999999999999998754
No 12
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.76 E-value=7.6e-19 Score=183.79 Aligned_cols=176 Identities=18% Similarity=0.223 Sum_probs=128.3
Q ss_pred eccCCCCCCCchHH--HhhhhhHhhhhhcccccchHHHHHHHHHHHHHhcCCCCC--CCcchhhHHhhhhhhHHH-----
Q 011705 188 YGTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDPN--DPIVPFVVFLGTSATLWI----- 258 (479)
Q Consensus 188 ~G~~~~~l~p~~~~--~~~~~e~~~~~v~~p~g~~~~qv~~~le~l~~~lg~~~~--~PvL~~~v~~g~~~al~l----- 258 (479)
+|+|++|++|+..+ .+.+|.+.| +++|+.+.++ ..++.|.++-++|+... ..++ .+.....-+-
T Consensus 183 ~~~c~~c~~~~~~~~~~~~~~~~~g--v~g~~~~~~g-~~~a~e~ik~l~g~~~~~~~~l~----~~d~~~~~~~~~~~~ 255 (392)
T PRK07878 183 LGLNYRDLYPEPPPPGMVPSCAEGG--VLGVLCASIG-SIMGTEAIKLITGIGEPLLGRLM----VYDALEMTYRTIKIR 255 (392)
T ss_pred CCCeeeeecCCCCCccCCCCCccCC--ccchHHHHHH-HHHHHHHHHHHhCCCCCCcCcEE----EEECCCCceeeEeec
Confidence 58999999886433 567899888 9999999998 78889999999886321 1121 1111111000
Q ss_pred ------------HHHHHHh--------cCCCCccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCCccccccccccccC
Q 011705 259 ------------FYWWWTY--------GGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVY 318 (479)
Q Consensus 259 ------------~~~l~~~--------~~~~g~ISp~El~elL~~~~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIP 318 (479)
.|-.+.. ..-...++++|+.++++++++.+|||+|++.||+.+|||||+ |+|
T Consensus 256 ~~~~C~~~~~~~~~~~~c~~~~~~~~~~~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAi--------nip 327 (392)
T PRK07878 256 KDPSTPKITELIDYEAFCGVVSDEAQQAAAGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQ--------LIP 327 (392)
T ss_pred cCCCCCcccccccchhhcccccccccccCCCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCE--------EcC
Confidence 0000100 011135899999999865557899999999999999999999 898
Q ss_pred cccccchhHhhhcCchhhhHHHHHHHHhhhccCCCCcEEEEEeCCCchHHHHHHHHHHccCCCEEEecccHHHHHHcCCC
Q 011705 319 LPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLR 398 (479)
Q Consensus 319 l~el~~~l~~ll~~~~~L~~ll~alGIs~Lk~~~kd~~IVVyC~sG~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~aaGLP 398 (479)
+.++.... . +. .++++++||+||++|.||..+++.|++.||++|++|+||+.+|.+...|
T Consensus 328 ~~~l~~~~-~-------~~------------~l~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~~ 387 (392)
T PRK07878 328 KSEILSGE-A-------LA------------KLPQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAWAKQVDP 387 (392)
T ss_pred hHHhcchh-H-------Hh------------hCCCCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHHHHHHhcCC
Confidence 76654210 0 11 1378899999999999999999999999999999999999999987644
No 13
>PRK07411 hypothetical protein; Validated
Probab=99.76 E-value=1.1e-18 Score=182.68 Aligned_cols=178 Identities=20% Similarity=0.217 Sum_probs=126.1
Q ss_pred ccCCCCCCCchHH--HhhhhhHhhhhhcccccchHHHHHHHHHHHHHhcCCCCC--CCcchhhHHhhhhhhHHH------
Q 011705 189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDPN--DPIVPFVVFLGTSATLWI------ 258 (479)
Q Consensus 189 G~~~~~l~p~~~~--~~~~~e~~~~~v~~p~g~~~~qv~~~le~l~~~lg~~~~--~PvL~~~v~~g~~~al~l------ 258 (479)
|||++|++|+.++ .+.+|.+.+ |++|+.+.++ ..++.|.++-++|+... ..++ ++.....-+-
T Consensus 176 ~~c~~c~~~~~~~~~~~~~c~~~g--vlg~~~~~~g-~~~a~eaik~l~g~~~~l~~~l~----~~d~~~~~~~~~~~~~ 248 (390)
T PRK07411 176 GPNYRDLYPEPPPPGMVPSCAEGG--VLGILPGIIG-VIQATETIKIILGAGNTLSGRLL----LYNALDMKFRELKLRP 248 (390)
T ss_pred CCChHHhcCCCCCcccCCCCccCC--cCcchHHHHH-HHHHHHHHHHHcCCCCCCCCeEE----EEECCCCceeEEeccC
Confidence 5899999987533 556899999 9999999998 78889999999886321 1121 1111110000
Q ss_pred -----------HHHHHHh-----------cCCCCccCHHHHHHHHhCCC-CcEEEEcCChhhhhhcCCCCcccccccccc
Q 011705 259 -----------FYWWWTY-----------GGYSGDLSPKSTLELLRGKE-NAVLIDVRHEDLRERDGIPDLRRGARFRYA 315 (479)
Q Consensus 259 -----------~~~l~~~-----------~~~~g~ISp~El~elL~~~~-~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~ 315 (479)
.|-.+.. +.....|+++|+.++++.+. +.+|||||++.||+.+|||||+
T Consensus 249 ~~~c~~i~~~~~~~~~~G~~~~~~~~~~~~~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAi-------- 320 (390)
T PRK07411 249 NPERPVIEKLIDYEQFCGIPQAKAAEAAQKAEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSV-------- 320 (390)
T ss_pred CCCCCccccccchhhhcccccccccccccccccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCE--------
Confidence 0000100 11124689999999986443 6899999999999999999999
Q ss_pred ccCcccccchhHhhhcCchhhhHHHHHHHHhhhccCCCCcEEEEEeCCCchHHHHHHHHHHccCCCEEEecccHHHHHHc
Q 011705 316 SVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKE 395 (479)
Q Consensus 316 nIPl~el~~~l~~ll~~~~~L~~ll~alGIs~Lk~~~kd~~IVVyC~sG~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~aa 395 (479)
|+|+.++..... .+.+ +.++++++||+||++|.||..+++.|+.+||++ +.+.||+.+|.+.
T Consensus 321 niP~~~l~~~~~-----~~~l------------~~l~~d~~IVvyC~~G~RS~~aa~~L~~~G~~~-~~l~GG~~~W~~~ 382 (390)
T PRK07411 321 LVPLPDIENGPG-----VEKV------------KELLNGHRLIAHCKMGGRSAKALGILKEAGIEG-TNVKGGITAWSRE 382 (390)
T ss_pred EccHHHhhcccc-----hHHH------------hhcCCCCeEEEECCCCHHHHHHHHHHHHcCCCe-EEecchHHHHHHh
Confidence 898866543110 0011 123678999999999999999999999999975 6899999999987
Q ss_pred CCCc
Q 011705 396 GLRI 399 (479)
Q Consensus 396 GLPV 399 (479)
..|.
T Consensus 383 ~~p~ 386 (390)
T PRK07411 383 VDPS 386 (390)
T ss_pred cCCC
Confidence 6553
No 14
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.75 E-value=4.4e-18 Score=146.85 Aligned_cols=101 Identities=19% Similarity=0.229 Sum_probs=84.4
Q ss_pred CCccCHHHHHHHHhCC-CCcEEEEcCChhhhhhcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHHHHHHhh
Q 011705 269 SGDLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRN 347 (479)
Q Consensus 269 ~g~ISp~El~elL~~~-~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGIs~ 347 (479)
...++++++.++++++ ++++|||+|++.+|..+|||||+ ++|...+.....
T Consensus 7 ~~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~--------~ip~~~l~~~~~-------------------- 58 (110)
T cd01521 7 AFETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAI--------NLPHREICENAT-------------------- 58 (110)
T ss_pred eeecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCE--------eCCHHHhhhHhh--------------------
Confidence 3579999999999754 56899999999999999999998 888755432110
Q ss_pred hccCCCCcEEEEEeCCCc--hHHHHHHHHHHccCCCEEEecccHHHHHHcCCCc
Q 011705 348 LKIVQDRSKVIVMDADGT--RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 399 (479)
Q Consensus 348 Lk~~~kd~~IVVyC~sG~--rS~~AA~~L~~~Gf~nV~vL~GG~~aW~aaGLPV 399 (479)
..++++++||+||++|. +|..+++.|+..||+ +++|+||+.+|+.+|+|+
T Consensus 59 -~~i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 59 -AKLDKEKLFVVYCDGPGCNGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT 110 (110)
T ss_pred -hcCCCCCeEEEEECCCCCchHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence 11378999999999874 899999999999995 999999999999999875
No 15
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.75 E-value=1.8e-18 Score=149.64 Aligned_cols=107 Identities=20% Similarity=0.247 Sum_probs=89.5
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhhhh-----------cCCCCccccccccccccCcccccchhHhhhcCchhhhHHH
Q 011705 272 LSPKSTLELLRGKENAVLIDVRHEDLRER-----------DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTL 340 (479)
Q Consensus 272 ISp~El~elL~~~~~~vLIDVRs~~Ef~~-----------gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll 340 (479)
++++++.++++ +++++|||+|++.||.. ||||||+ ++|+.++.... ..+++++++.+.+
T Consensus 1 ~s~~~l~~~l~-~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~--------~~p~~~~~~~~-~~~~~~~~~~~~~ 70 (118)
T cd01449 1 VTAEEVLANLD-SGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAV--------NIPWTSLLDED-GTFKSPEELRALF 70 (118)
T ss_pred CCHHHHHHhcC-CCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCc--------ccChHHhcCCC-CCcCCHHHHHHHH
Confidence 57889999884 56689999999999987 9999998 88876554322 2345666777777
Q ss_pred HHHHHhhhccCCCCcEEEEEeCCCchHHHHHHHHHHccCCCEEEecccHHHHHH
Q 011705 341 TAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (479)
Q Consensus 341 ~alGIs~Lk~~~kd~~IVVyC~sG~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~a 394 (479)
...++ +++++||+||++|.+|.++++.|+.+||+++++|+||+.+|.+
T Consensus 71 ~~~~~------~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 118 (118)
T cd01449 71 AALGI------TPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWGS 118 (118)
T ss_pred HHcCC------CCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhcC
Confidence 77776 7899999999999999999999999999999999999999963
No 16
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.75 E-value=4.1e-18 Score=141.73 Aligned_cols=93 Identities=27% Similarity=0.387 Sum_probs=80.4
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCChhhhhh--cCCCCccccccccccccCcccccchhHhhhcCchhhhHHHHHHHHhhh
Q 011705 271 DLSPKSTLELLRGKENAVLIDVRHEDLRER--DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNL 348 (479)
Q Consensus 271 ~ISp~El~elL~~~~~~vLIDVRs~~Ef~~--gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGIs~L 348 (479)
.|+++++.+++++++++++||+|++.||.. +|||||. ++|+.++......
T Consensus 1 ~i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~--------~ip~~~~~~~~~~-------------------- 52 (96)
T cd01444 1 RISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAI--------HLDEDSLDDWLGD-------------------- 52 (96)
T ss_pred CcCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCe--------eCCHHHHHHHHhh--------------------
Confidence 378999999886446799999999999999 9999999 8887655432221
Q ss_pred ccCCCCcEEEEEeCCCchHHHHHHHHHHccCCCEEEecccHHHHH
Q 011705 349 KIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (479)
Q Consensus 349 k~~~kd~~IVVyC~sG~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~ 393 (479)
++++++||+||++|.+|..+++.|+..||++|++|+||+.+|+
T Consensus 53 --~~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 53 --LDRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred --cCCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 2789999999999999999999999999999999999999996
No 17
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.74 E-value=5.7e-18 Score=148.93 Aligned_cols=110 Identities=23% Similarity=0.273 Sum_probs=88.0
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHHHHHHhhhc
Q 011705 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (479)
Q Consensus 270 g~ISp~El~elL~~~~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGIs~Lk 349 (479)
..|+++++.++++++++++|||+|++.||..+|||||+ |+|+.++......+.+ + ++...+
T Consensus 8 ~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai--------~ip~~~~~~~~~~~~~----~--~~~~~~----- 68 (122)
T cd01526 8 ERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAI--------NIPLSELLSKAAELKS----L--QELPLD----- 68 (122)
T ss_pred cccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCe--------EccHHHHhhhhhhhhh----h--hhcccc-----
Confidence 57999999999865467899999999999999999999 8998766543332100 0 111112
Q ss_pred cCCCCcEEEEEeCCCchHHHHHHHHHHccC-CCEEEecccHHHHHHcCCCc
Q 011705 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGV-MRAFLVQGGFQSWVKEGLRI 399 (479)
Q Consensus 350 ~~~kd~~IVVyC~sG~rS~~AA~~L~~~Gf-~nV~vL~GG~~aW~aaGLPV 399 (479)
.+++++||+||++|.||..+++.|+..|| +++++++||+.+|....-|.
T Consensus 69 -~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~~ 118 (122)
T cd01526 69 -NDKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDPT 118 (122)
T ss_pred -cCCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHHHHHHHhCcc
Confidence 27889999999999999999999999999 79999999999999876543
No 18
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.74 E-value=8e-18 Score=142.68 Aligned_cols=100 Identities=18% Similarity=0.229 Sum_probs=78.4
Q ss_pred cCHHHHHHHHhCC-CCcEEEEcCChhhhhhcCCCCccccccccccccCcccccc---hhHhhhcCchhhhHHHHHHHHhh
Q 011705 272 LSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGG---SVKKLLRGGRELDDTLTAAVIRN 347 (479)
Q Consensus 272 ISp~El~elL~~~-~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~---~l~~ll~~~~~L~~ll~alGIs~ 347 (479)
||++++.+++.++ ++.+|||||++.||..||||||+ ++|+.++.. .... ++....+..
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~--------~ip~~~~~~~~~~~~~-~~~~~~~~~--------- 62 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSI--------NIPFSSVFLKEGELEQ-LPTVPRLEN--------- 62 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCE--------eCCHHHhccccccccc-ccchHHHHh---------
Confidence 6899999999643 36899999999999999999998 888754421 1111 111111111
Q ss_pred hccCCCCcEEEEEeCCCchHHHHHHHHHHccCCCEEEecccHHHHH
Q 011705 348 LKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (479)
Q Consensus 348 Lk~~~kd~~IVVyC~sG~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~ 393 (479)
.++++||+||.+|.+|..+++.|+..||++|++|+||+.+|+
T Consensus 63 ----~~~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 63 ----YKGKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred ----hcCCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 357899999999999999999999999999999999999995
No 19
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.74 E-value=1e-17 Score=153.00 Aligned_cols=98 Identities=17% Similarity=0.289 Sum_probs=81.2
Q ss_pred HHHHHhCCCCcEEEEcCChhhhhhcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHHHHHHhhhccCCCCcE
Q 011705 277 TLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSK 356 (479)
Q Consensus 277 l~elL~~~~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGIs~Lk~~~kd~~ 356 (479)
+.+++.++.+++|||||++.+|+.+|||||+ ++|...+...+.. .+++++
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi--------~~~~~~l~~~l~~----------------------l~~~~~ 51 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAW--------WVLRAQLAQALEK----------------------LPAAER 51 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHcCCCCCce--------eCCHHHHHHHHHh----------------------cCCCCC
Confidence 4455555566899999999999999999998 7765444332221 256789
Q ss_pred EEEEeCCCchHHHHHHHHHHccCCCEEEecccHHHHHHcCCCcccccc
Q 011705 357 VIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKS 404 (479)
Q Consensus 357 IVVyC~sG~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~aaGLPV~~~~p 404 (479)
||+||.+|.+|..+++.|+..||++|++|+||+.+|+++|+|+..+.+
T Consensus 52 vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~aW~~~g~pl~~~~~ 99 (145)
T cd01535 52 YVLTCGSSLLARFAAADLAALTVKPVFVLEGGTAAWIAAGLPVESGET 99 (145)
T ss_pred EEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHHHHHHCCCCcccCCC
Confidence 999999999999999999999999999999999999999999987644
No 20
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.73 E-value=1.3e-17 Score=141.38 Aligned_cols=97 Identities=27% Similarity=0.397 Sum_probs=80.8
Q ss_pred ccCHHHHHHHHhCC-CCcEEEEcCChhhhhhcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHHHHHHhhhc
Q 011705 271 DLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (479)
Q Consensus 271 ~ISp~El~elL~~~-~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGIs~Lk 349 (479)
.|+++++.+++... .+.++||+|++.||..+|||||+ |+|+.++......+ .
T Consensus 1 ~i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~--------~ip~~~~~~~~~~~-------------------~ 53 (101)
T cd01528 1 QISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFL--------HLPMSEIPERSKEL-------------------D 53 (101)
T ss_pred CCCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCE--------ecCHHHHHHHHHHh-------------------c
Confidence 37899999999643 36899999999999999999999 89976654332221 0
Q ss_pred cCCCCcEEEEEeCCCchHHHHHHHHHHccCCCEEEecccHHHHHH
Q 011705 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (479)
Q Consensus 350 ~~~kd~~IVVyC~sG~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~a 394 (479)
..++++++|+||++|.||..++..|.+.||+++++|+||+.+|..
T Consensus 54 ~~~~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~w~~ 98 (101)
T cd01528 54 SDNPDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDAWSL 98 (101)
T ss_pred ccCCCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHHHhh
Confidence 114688999999999999999999999999999999999999975
No 21
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.73 E-value=1.5e-17 Score=154.51 Aligned_cols=110 Identities=16% Similarity=0.145 Sum_probs=83.4
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChh----hhhhc---------CCCCccccccccccccCc---ccccchhHhhhcCc
Q 011705 270 GDLSPKSTLELLRGKENAVLIDVRHED----LRERD---------GIPDLRRGARFRYASVYL---PEVGGSVKKLLRGG 333 (479)
Q Consensus 270 g~ISp~El~elL~~~~~~vLIDVRs~~----Ef~~g---------HIPGA~~av~~~~~nIPl---~el~~~l~~ll~~~ 333 (479)
..|+++|+.+++. +++.+|||||++. ||..| |||||+ ++|. .++.....
T Consensus 36 ~~vs~~el~~~l~-~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv--------~ip~~~~~~l~~~~~------ 100 (162)
T TIGR03865 36 RVLDTEAAQALLA-RGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSL--------WLPNTGYGNLAPAWQ------ 100 (162)
T ss_pred cccCHHHHHHHHh-CCCcEEEECCCCccccccccccceeccccCCCCCCcE--------EecccCCCCCCCchh------
Confidence 4799999999995 5678999999876 46544 999998 6653 22222110
Q ss_pred hhhhHHHHHHHHhhhccCCCCcEEEEEeCCCc-hHHHHHHHHHHccCCCEEEecccHHHHHHcCCCc
Q 011705 334 RELDDTLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 399 (479)
Q Consensus 334 ~~L~~ll~alGIs~Lk~~~kd~~IVVyC~sG~-rS~~AA~~L~~~Gf~nV~vL~GG~~aW~aaGLPV 399 (479)
..+.+.+.++++ .+++++||+||++|. +|..+++.|+.+||++|++|+||+.+|+++|+|+
T Consensus 101 ~~~~~~l~~~~~-----~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 101 AYFRRGLERATG-----GDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred HHHHHHHHHhcC-----CCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence 112223333332 268999999999997 8999999999999999999999999999999985
No 22
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.73 E-value=7e-18 Score=185.43 Aligned_cols=214 Identities=15% Similarity=0.114 Sum_probs=151.3
Q ss_pred chhHHHHHHHHHHhhhhcccCcceEEEeeccCCCCCCCchHHHhhhhhHhhhhhcccccchHHHHHHHHHHHHHhcCCCC
Q 011705 160 VAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP 239 (479)
Q Consensus 160 ~~~~d~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~l~p~~~~~~~~~e~~~~~v~~p~g~~~~qv~~~le~l~~~lg~~~ 239 (479)
-++.++|++.+..-+-.+.|.|+.--|.=||++..+.-+......... ..-+++.. ...++.+.+.+|+++
T Consensus 10 lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~----~~~~~lp~-----~~~l~~~l~~lGI~~ 80 (610)
T PRK09629 10 VIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGKP----PAPGLLPD-----TADLEQLFGELGHNP 80 (610)
T ss_pred eecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccCC----CCCCCCCC-----HHHHHHHHHHcCCCC
Confidence 478899999996655678999998888999999888766543221100 01112221 123444555689999
Q ss_pred CCCcchhhHHhhhhhhH---HHHHHH-----------------HHhcCCC--------------------CccCHHHHHH
Q 011705 240 NDPIVPFVVFLGTSATL---WIFYWW-----------------WTYGGYS--------------------GDLSPKSTLE 279 (479)
Q Consensus 240 ~~PvL~~~v~~g~~~al---~l~~~l-----------------~~~~~~~--------------------g~ISp~El~e 279 (479)
++||+++ +..+.. .++|.+ |...++. ..++.+++.+
T Consensus 81 d~~VVvY----d~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~~~~~~~~~~~~~~~~~~v~~e~v~~ 156 (610)
T PRK09629 81 DAVYVVY----DDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDVPPVAGGPVTLTLHDEPTATREYLQS 156 (610)
T ss_pred CCEEEEE----CCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCCCCCCCcceeeccCCcccccHHHHHH
Confidence 9999743 322211 222222 3222221 1246778888
Q ss_pred HHhCCCCcEEEEcCChhhhh--------hcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHHHHHHhhhccC
Q 011705 280 LLRGKENAVLIDVRHEDLRE--------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIV 351 (479)
Q Consensus 280 lL~~~~~~vLIDVRs~~Ef~--------~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGIs~Lk~~ 351 (479)
.+ ++++.+|||+|++.||. .||||||+ |+|+.++.... ..+++++++++++..+|+
T Consensus 157 ~l-~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAv--------nip~~~~~~~~-~~lk~~~el~~~~~~~Gi------ 220 (610)
T PRK09629 157 RL-GAADLAIWDARAPTEYSGEKVVAAKGGHIPGAV--------NFEWTAGMDKA-RNLRIRQDMPEILRDLGI------ 220 (610)
T ss_pred hh-CCCCcEEEECCCccccCCcccccccCCCCCCCe--------ecCHHHhcCCC-CCCCCHHHHHHHHHHcCC------
Confidence 87 45678999999999994 79999999 88875432221 235667788898988888
Q ss_pred CCCcEEEEEeCCCchHHHHHHHHHHccCCCEEEecccHHHHHHc-CCCcccc
Q 011705 352 QDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKE-GLRIKEL 402 (479)
Q Consensus 352 ~kd~~IVVyC~sG~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~aa-GLPV~~~ 402 (479)
+++++||+||++|.+|..+++.|+.+||++|++|+|||.+|.+. ++|+++.
T Consensus 221 ~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lPv~~~ 272 (610)
T PRK09629 221 TPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVEVP 272 (610)
T ss_pred CCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCccccC
Confidence 78999999999999999999999999999999999999999874 7898764
No 23
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.72 E-value=2.6e-17 Score=146.24 Aligned_cols=105 Identities=25% Similarity=0.364 Sum_probs=80.3
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCCccccccccccccCcccccchh-----------------HhhhcCch
Q 011705 272 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSV-----------------KKLLRGGR 334 (479)
Q Consensus 272 ISp~El~elL~~~~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~l-----------------~~ll~~~~ 334 (479)
|+++|+.+++. ++.+|||||++.||..||||||+ |+|+.....+. +..++. .
T Consensus 1 ~s~~el~~~l~--~~~~iiDvR~~~e~~~ghIpgAi--------nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 69 (128)
T cd01520 1 ITAEDLLALRK--ADGPLIDVRSPKEFFEGHLPGAI--------NLPLLDDEERALVGTLYKQQGREAAIELGLELVS-G 69 (128)
T ss_pred CCHHHHHHHHh--cCCEEEECCCHHHhccCcCCCcE--------EccCCChhHHHHhhhheeccCHHHHHHHHHHHHh-h
Confidence 68999999984 57899999999999999999999 88874432110 000111 1
Q ss_pred hhhHHHHH---HHHhhhccCCCCcEEEEEeC-CCchHHHHHHHHHHccCCCEEEecccHHHHHH
Q 011705 335 ELDDTLTA---AVIRNLKIVQDRSKVIVMDA-DGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (479)
Q Consensus 335 ~L~~ll~a---lGIs~Lk~~~kd~~IVVyC~-sG~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~a 394 (479)
.+++.+.. .|+ +++++||+||. +|.||..+++.|+.+|| +|++|+||+.+|+.
T Consensus 70 ~~~~~~~~~~~~~i------~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 70 KLKRILNEAWEARL------ERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred hHHHHHHHHHHhcc------CCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 23333333 255 78999999997 68899999999999999 69999999999975
No 24
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.72 E-value=1.5e-17 Score=139.87 Aligned_cols=102 Identities=22% Similarity=0.339 Sum_probs=79.6
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhh-hhcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHHHHHHhhhcc
Q 011705 272 LSPKSTLELLRGKENAVLIDVRHEDLR-ERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (479)
Q Consensus 272 ISp~El~elL~~~~~~vLIDVRs~~Ef-~~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGIs~Lk~ 350 (479)
|+++++.+++. +++.+|||+|++.+| ..||||||+ |+|+..+...... +. .+...+
T Consensus 1 is~~el~~~~~-~~~~~iiDvR~~~~~~~~ghIpga~--------~ip~~~~~~~~~~---~~-----~~~~~~------ 57 (103)
T cd01447 1 LSPEDARALLG-SPGVLLVDVRDPRELERTGMIPGAF--------HAPRGMLEFWADP---DS-----PYHKPA------ 57 (103)
T ss_pred CCHHHHHHHHh-CCCeEEEECCCHHHHHhcCCCCCcE--------EcccchhhhhcCc---cc-----cccccC------
Confidence 57899999884 467899999999998 579999998 8886544321110 00 000011
Q ss_pred CCCCcEEEEEeCCCchHHHHHHHHHHccCCCEEEecccHHHHHHcC
Q 011705 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEG 396 (479)
Q Consensus 351 ~~kd~~IVVyC~sG~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~aaG 396 (479)
++++++||+||.+|.+|..+++.|+..||++|++|+||+.+|..+|
T Consensus 58 ~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 58 FAEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHHHHhhcC
Confidence 3788999999999999999999999999999999999999998765
No 25
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.72 E-value=1.5e-17 Score=167.36 Aligned_cols=215 Identities=17% Similarity=0.191 Sum_probs=156.1
Q ss_pred cchhHHHHHHHHH-----HhhhhcccCcc--eEEEeeccCCCCCCCchHHHhhhhhHhhhhhcccccchHHHHHHHHHHH
Q 011705 159 TVAAVDVLRNTIV-----ALEESMTNGAS--FVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGL 231 (479)
Q Consensus 159 ~~~~~d~l~~~~~-----~~~~~~~~~~~--~~~~~~G~~~~~l~p~~~~~~~~~e~~~~~v~~p~g~~~~qv~~~le~l 231 (479)
--|+.|||.+.+. .++-++..... -..|.-||++..++-+....++-... .-.++.. -+.++.+
T Consensus 11 ~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~----~~~~lp~-----~e~fa~~ 81 (285)
T COG2897 11 FLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVP----LPHMLPS-----PEQFAKL 81 (285)
T ss_pred eEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCC----CCCCCCC-----HHHHHHH
Confidence 3578999999976 33433333333 47788899999999988876633211 1122222 2345566
Q ss_pred HHhcCCCCCCCcchhhHHhhhhhhHHHHHHHHHhcCC--------------------C--------------------Cc
Q 011705 232 ERSLGFDPNDPIVPFVVFLGTSATLWIFYWWWTYGGY--------------------S--------------------GD 271 (479)
Q Consensus 232 ~~~lg~~~~~PvL~~~v~~g~~~al~l~~~l~~~~~~--------------------~--------------------g~ 271 (479)
.+.+|+..+++|+ +++.-..+++.+.||.++-+ . ..
T Consensus 82 ~~~~GI~~d~tVV----vYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~~~~~~~f~~~~~~~~~ 157 (285)
T COG2897 82 LGELGIRNDDTVV----VYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPPEPPPTTFSAKYNVKAV 157 (285)
T ss_pred HHHcCCCCCCEEE----EECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCCCCCCccccccCCcccc
Confidence 6779999999986 56655555665555433211 0 12
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhhhh----------cCCCCccccccccccccCcccccchhHhhhcCchhhhHHHH
Q 011705 272 LSPKSTLELLRGKENAVLIDVRHEDLRER----------DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLT 341 (479)
Q Consensus 272 ISp~El~elL~~~~~~vLIDVRs~~Ef~~----------gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~ 341 (479)
.+..+....+ +....+|||+|++.+|.. ||||||+ |+|+.++.+ -+.+++.++.++.++.
T Consensus 158 ~~~~~~~~~~-~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAi--------Nipw~~~~~-~~~~~~~~~~~~~l~~ 227 (285)
T COG2897 158 VDATLVADAL-EVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAI--------NIPWTDLVD-DGGLFKSPEEIARLYA 227 (285)
T ss_pred CCHHHHHHHh-cCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCc--------CcCHHHHhc-CCCccCcHHHHHHHHH
Confidence 3445666666 456788999999999988 9999999 999877766 3446677777888777
Q ss_pred HHHHhhhccCCCCcEEEEEeCCCchHHHHHHHHHHccCCCEEEecccHHHHHHc-CCCcccc
Q 011705 342 AAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKE-GLRIKEL 402 (479)
Q Consensus 342 alGIs~Lk~~~kd~~IVVyC~sG~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~aa-GLPV~~~ 402 (479)
..|| +++++||+||++|.+|...+..|+.+|++++++++|++..|.+. +.|++.+
T Consensus 228 ~~gi------~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~~PV~~g 283 (285)
T COG2897 228 DAGI------DPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVETG 283 (285)
T ss_pred hcCC------CCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCCCCccccC
Confidence 8888 89999999999999999999999999999999999999999875 4577654
No 26
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.72 E-value=1.9e-17 Score=148.12 Aligned_cols=116 Identities=22% Similarity=0.248 Sum_probs=94.2
Q ss_pred CCCCccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHHHHHHh
Q 011705 267 GYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIR 346 (479)
Q Consensus 267 ~~~g~ISp~El~elL~~~~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGIs 346 (479)
+....++.++++++++ .++.++||||+|+||.+||+|.++ |||+-...... .+++++|+.+ .|.
T Consensus 20 ~~~~sv~~~qvk~L~~-~~~~~llDVRepeEfk~gh~~~si--------NiPy~~~~~~~--~l~~~eF~kq----vg~- 83 (136)
T KOG1530|consen 20 SNPQSVSVEQVKNLLQ-HPDVVLLDVREPEEFKQGHIPASI--------NIPYMSRPGAG--ALKNPEFLKQ----VGS- 83 (136)
T ss_pred CCcEEEEHHHHHHHhc-CCCEEEEeecCHHHhhccCCcceE--------ecccccccccc--ccCCHHHHHH----hcc-
Confidence 4456789999999994 667999999999999999999998 99974333222 3456666553 333
Q ss_pred hhccCCCCcEEEEEeCCCchHHHHHHHHHHccCCCEEEecccHHHHHHcCCCcc
Q 011705 347 NLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIK 400 (479)
Q Consensus 347 ~Lk~~~kd~~IVVyC~sG~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~aaGLPV~ 400 (479)
.| .+.+++||++|++|.||..|...|..+||+||.++.|||.+|...++|..
T Consensus 84 -~k-p~~d~eiIf~C~SG~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~ 135 (136)
T KOG1530|consen 84 -SK-PPHDKEIIFGCASGVRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK 135 (136)
T ss_pred -cC-CCCCCcEEEEeccCcchhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence 22 25677999999999999999999999999999999999999999998764
No 27
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.71 E-value=2e-17 Score=135.26 Aligned_cols=99 Identities=29% Similarity=0.441 Sum_probs=76.3
Q ss_pred CCCcEEEEcCChhhhhhcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHHHHHHhhhccCCCCcEEEEEeCC
Q 011705 284 KENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD 363 (479)
Q Consensus 284 ~~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGIs~Lk~~~kd~~IVVyC~s 363 (479)
+++++|||+|++.||..+|||||+ |+|+..+...... .+.. .+...+...++ +++++||+||.+
T Consensus 2 ~~~~~ivDvR~~~e~~~~hi~ga~--------~i~~~~~~~~~~~-~~~~-~~~~~~~~~~~------~~~~~iv~~c~~ 65 (100)
T smart00450 2 DEKVVLLDVRSPEEYEGGHIPGAV--------NIPLSELLDRRGE-LDIL-EFEELLKRLGL------DKDKPVVVYCRS 65 (100)
T ss_pred CCCEEEEECCCHHHhccCCCCCce--------eCCHHHhccCCCC-cCHH-HHHHHHHHcCC------CCCCeEEEEeCC
Confidence 467899999999999999999998 8887554432111 0000 12222222333 788999999999
Q ss_pred CchHHHHHHHHHHccCCCEEEecccHHHHHHcCCC
Q 011705 364 GTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLR 398 (479)
Q Consensus 364 G~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~aaGLP 398 (479)
|.++..+++.|+..||++|++|+||+.+|...+.|
T Consensus 66 g~~a~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 66 GNRSAKAAWLLRELGFKNVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred CcHHHHHHHHHHHcCCCceEEecCCHHHHHhcCCC
Confidence 99999999999999999999999999999998865
No 28
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.71 E-value=2.3e-17 Score=137.16 Aligned_cols=89 Identities=22% Similarity=0.289 Sum_probs=76.4
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHHHHHHhhhccC
Q 011705 272 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIV 351 (479)
Q Consensus 272 ISp~El~elL~~~~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGIs~Lk~~ 351 (479)
++|+++.+++ .++.++||+|++.+|..+|||||+ ++|+.++...... +
T Consensus 1 ~~~~e~~~~~--~~~~~iiD~R~~~~~~~~hipgA~--------~ip~~~~~~~~~~----------------------~ 48 (90)
T cd01524 1 VQWHELDNYR--ADGVTLIDVRTPQEFEKGHIKGAI--------NIPLDELRDRLNE----------------------L 48 (90)
T ss_pred CCHHHHHHHh--cCCCEEEECCCHHHHhcCCCCCCE--------eCCHHHHHHHHHh----------------------c
Confidence 4788999988 357799999999999999999999 8887654332221 2
Q ss_pred CCCcEEEEEeCCCchHHHHHHHHHHccCCCEEEecccHHHHH
Q 011705 352 QDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (479)
Q Consensus 352 ~kd~~IVVyC~sG~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~ 393 (479)
+++++||+||++|.++..+++.|+..|| ++++|+||+.+|+
T Consensus 49 ~~~~~vvl~c~~g~~a~~~a~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 49 PKDKEIIVYCAVGLRGYIAARILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred CCCCcEEEEcCCChhHHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence 6788999999999999999999999999 9999999999996
No 29
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.71 E-value=3e-18 Score=173.97 Aligned_cols=183 Identities=21% Similarity=0.247 Sum_probs=137.7
Q ss_pred eEEEee--ccCCCCCCCchHH--HhhhhhHhhhhhcccccchHHHHHHHHHHHHHhcCCC-CCCCcchhhHHhhhhhhHH
Q 011705 183 FVVYYY--GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFD-PNDPIVPFVVFLGTSATLW 257 (479)
Q Consensus 183 ~~~~~~--G~~~~~l~p~~~~--~~~~~e~~~~~v~~p~g~~~~qv~~~le~l~~~lg~~-~~~PvL~~~v~~g~~~al~ 257 (479)
-+||-| ||||||++|++++ .+.+|+|.| |++|+.|.++ ..+++|.++-+.|+. +-.|.|+ ++-|..+ -|
T Consensus 196 LtvYny~~GPCYRClFP~Ppp~~~vt~C~dgG--VlGpv~GviG-~mQALE~iKli~~~~~~~s~~ll--lfdg~~~-~~ 269 (427)
T KOG2017|consen 196 LTVYNYNNGPCYRCLFPNPPPPEAVTNCADGG--VLGPVTGVIG-CMQALETIKLIAGIGESLSGRLL--LFDGLSG-HF 269 (427)
T ss_pred eEEeecCCCceeeecCCCCcChHHhcccccCc--eeecchhhhh-HHHHHHHHHHHHccCccCCcceE--EEecccc-ee
Confidence 446666 8999999999999 999999999 9999999999 999999999998864 2344442 2333332 22
Q ss_pred HHHHHHHhcC----------------------C-------------CCccCHHHHHHHHhCCCCcEEEEcCChhhhhhcC
Q 011705 258 IFYWWWTYGG----------------------Y-------------SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDG 302 (479)
Q Consensus 258 l~~~l~~~~~----------------------~-------------~g~ISp~El~elL~~~~~~vLIDVRs~~Ef~~gH 302 (479)
..+++..++. + ..+||..|+.+.+++++.+++||||++.||+..|
T Consensus 270 r~irlR~r~~~C~~Cg~n~tit~~~dYe~fCg~~~~~~~~l~lL~~~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~ 349 (427)
T KOG2017|consen 270 RTIRLRSRRPKCAVCGKNPTITSLIDYELFCGSSATDKCPLKLLEPDERVSVTDYKRILDSGAKHLLLDVRPSHEYEICR 349 (427)
T ss_pred EEEEeccCCCCCcccCCCCccCcccchhcccCCccccccchhcCChhhcccHHHHHHHHhcCCCeEEEeccCcceEEEEe
Confidence 2222211110 0 1368889999999877899999999999999999
Q ss_pred CCCccccccccccccCcccccchhHhhhcCchhhhHHHHHHHHhhhccCCCCcEEEEEeCCCchHHHHHHHHHHccCC-C
Q 011705 303 IPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVM-R 381 (479)
Q Consensus 303 IPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGIs~Lk~~~kd~~IVVyC~sG~rS~~AA~~L~~~Gf~-n 381 (479)
+|+++ |||+.++..+..+- +.. - .-....+|+|+|+.|+.|.++++.|+...+. +
T Consensus 350 lP~av--------NIPL~~l~~~~~~~------~~~------~----~~~~~~~I~ViCrrGNdSQ~Av~~Lre~~~~~~ 405 (427)
T KOG2017|consen 350 LPEAV--------NIPLKELRSRSGKK------LQG------D----LNTESKDIFVICRRGNDSQRAVRILREKFPDSS 405 (427)
T ss_pred ccccc--------ccchhhhhhhhhhh------hcc------c----ccccCCCEEEEeCCCCchHHHHHHHHhhCCchh
Confidence 99999 99998877654421 110 0 0134567999999999999999999876554 6
Q ss_pred EEEecccHHHHHHc
Q 011705 382 AFLVQGGFQSWVKE 395 (479)
Q Consensus 382 V~vL~GG~~aW~aa 395 (479)
|+-+.||+.+|...
T Consensus 406 vrDvigGl~~w~~~ 419 (427)
T KOG2017|consen 406 VRDVIGGLKAWAAK 419 (427)
T ss_pred hhhhhhHHHHHHHh
Confidence 77889999999875
No 30
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.71 E-value=2.3e-17 Score=164.93 Aligned_cols=119 Identities=14% Similarity=0.230 Sum_probs=99.5
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCC----------hhhhhhcCCCCccccccccccccCcccccc---hhHhhhcCchhhh
Q 011705 271 DLSPKSTLELLRGKENAVLIDVRH----------EDLRERDGIPDLRRGARFRYASVYLPEVGG---SVKKLLRGGRELD 337 (479)
Q Consensus 271 ~ISp~El~elL~~~~~~vLIDVRs----------~~Ef~~gHIPGA~~av~~~~~nIPl~el~~---~l~~ll~~~~~L~ 337 (479)
-++++++.+++ ++++.+|||+|+ +.+|..||||||+ |+|+..+.. ....++++++.++
T Consensus 6 lvs~~~l~~~l-~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (281)
T PRK11493 6 FVAADWLAEHI-DDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAV--------FFDIEALSDHTSPLPHMMPRPETFA 76 (281)
T ss_pred ccCHHHHHHhc-CCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCE--------EcCHHHhcCCCCCCCCCCCCHHHHH
Confidence 48999999999 467899999997 7899999999998 666543322 2234556677888
Q ss_pred HHHHHHHHhhhccCCCCcEEEEEeCCCch-HHHHHHHHHHccCCCEEEecccHHHHHHcCCCcccccc
Q 011705 338 DTLTAAVIRNLKIVQDRSKVIVMDADGTR-SKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKS 404 (479)
Q Consensus 338 ~ll~alGIs~Lk~~~kd~~IVVyC~sG~r-S~~AA~~L~~~Gf~nV~vL~GG~~aW~aaGLPV~~~~p 404 (479)
+.+.++|+ +++++||+||.++.+ +.++++.|+..||++|++|+||+.+|.++|+|+....+
T Consensus 77 ~~~~~~Gi------~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~ 138 (281)
T PRK11493 77 VAMRELGV------NQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEGAV 138 (281)
T ss_pred HHHHHcCC------CCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCCCC
Confidence 99999999 789999999998774 67888999999999999999999999999999987643
No 31
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.71 E-value=6.9e-17 Score=136.43 Aligned_cols=108 Identities=29% Similarity=0.482 Sum_probs=79.4
Q ss_pred CHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHHHHHHhhhccCC
Q 011705 273 SPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQ 352 (479)
Q Consensus 273 Sp~El~elL~~~~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGIs~Lk~~~ 352 (479)
||+|+.+++ ++++++|||+|++.+|..+|||||+ |+|...+.... .......+...+...+. ..+
T Consensus 1 s~~el~~~l-~~~~~~liD~R~~~~~~~~hI~ga~--------~i~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~ 65 (113)
T PF00581_consen 1 SPEELKEML-ENESVLLIDVRSPEEYERGHIPGAV--------NIPFPSLDPDE--PSLSEDKLDEFLKELGK----KID 65 (113)
T ss_dssp -HHHHHHHH-TTTTEEEEEESSHHHHHHSBETTEE--------EEEGGGGSSSS--SBCHHHHHHHHHHHHTH----GST
T ss_pred CHHHHHhhh-hCCCeEEEEeCCHHHHHcCCCCCCc--------ccccccccccc--ccccccccccccccccc----ccc
Confidence 689999999 6789999999999999999999998 77764431000 00001112222222322 347
Q ss_pred CCcEEEEEeCCCchHHHHHHH-----HHHccCCCEEEecccHHHHHHc
Q 011705 353 DRSKVIVMDADGTRSKGIARS-----LRKLGVMRAFLVQGGFQSWVKE 395 (479)
Q Consensus 353 kd~~IVVyC~sG~rS~~AA~~-----L~~~Gf~nV~vL~GG~~aW~aa 395 (479)
++++||+||..|.++..++.. |...||++|++|+|||.+|.++
T Consensus 66 ~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~ 113 (113)
T PF00581_consen 66 KDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFEAWKAE 113 (113)
T ss_dssp TTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred ccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence 888999999999888777766 8899999999999999999863
No 32
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.70 E-value=5e-17 Score=165.85 Aligned_cols=119 Identities=17% Similarity=0.294 Sum_probs=99.6
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcC--------C-hhhhhhcCCCCccccccccccccCcccccc---hhHhhhcCchhhh
Q 011705 270 GDLSPKSTLELLRGKENAVLIDVR--------H-EDLRERDGIPDLRRGARFRYASVYLPEVGG---SVKKLLRGGRELD 337 (479)
Q Consensus 270 g~ISp~El~elL~~~~~~vLIDVR--------s-~~Ef~~gHIPGA~~av~~~~~nIPl~el~~---~l~~ll~~~~~L~ 337 (479)
..|+++++.+++. +++.+|||+| + ..+|..||||||+ ++|+.++.. ....++++++.++
T Consensus 22 ~lvs~~~L~~~l~-~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi--------~i~~~~~~~~~~~~~~~lp~~~~~~ 92 (320)
T PLN02723 22 PVVSVDWLHANLR-EPDVKVLDASWYMPDEQRNPIQEYQVAHIPGAL--------FFDLDGISDRTTDLPHMLPSEEAFA 92 (320)
T ss_pred ceecHHHHHHHhc-CCCeEEEEeeccccCCCCchHHHHHhccCCCCe--------ecCHHHhcCCCCCcCCCCCCHHHHH
Confidence 3699999999994 5789999996 3 3789999999998 666544433 2345667778899
Q ss_pred HHHHHHHHhhhccCCCCcEEEEEeCCCc-hHHHHHHHHHHccCCCEEEecccHHHHHHcCCCccccc
Q 011705 338 DTLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELK 403 (479)
Q Consensus 338 ~ll~alGIs~Lk~~~kd~~IVVyC~sG~-rS~~AA~~L~~~Gf~nV~vL~GG~~aW~aaGLPV~~~~ 403 (479)
+.+.++|| .++++|||||..|. .+.++++.|+.+||++|++|+||+.+|.++|+|+.+..
T Consensus 93 ~~l~~~Gi------~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~ 153 (320)
T PLN02723 93 AAVSALGI------ENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESSA 153 (320)
T ss_pred HHHHHcCC------CCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccCC
Confidence 99999999 78899999999886 46788899999999999999999999999999998753
No 33
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.69 E-value=6.1e-17 Score=143.20 Aligned_cols=99 Identities=22% Similarity=0.331 Sum_probs=79.4
Q ss_pred ccCHHHHHHHHhCC-----CCcEEEEcCChhhhhhcCCCCccccccccccccCcc-cccchhHhhhcCchhhhHHHHHHH
Q 011705 271 DLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLP-EVGGSVKKLLRGGRELDDTLTAAV 344 (479)
Q Consensus 271 ~ISp~El~elL~~~-----~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~-el~~~l~~ll~~~~~L~~ll~alG 344 (479)
.|+++++.+++.++ ++++|||||++.||..||||||+ |+|+. ++...+... ...++
T Consensus 3 ~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~--------~ip~~~~l~~~~~~~----------~~~~~ 64 (121)
T cd01530 3 RISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAV--------NLSTKDELEEFFLDK----------PGVAS 64 (121)
T ss_pred ccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCE--------eCCcHHHHHHHHHHh----------hcccc
Confidence 58999999999653 47899999999999999999999 88874 343321110 00111
Q ss_pred HhhhccCCCCcEEEEEeC-CCchHHHHHHHHHHc------------cCCCEEEecccHHHHH
Q 011705 345 IRNLKIVQDRSKVIVMDA-DGTRSKGIARSLRKL------------GVMRAFLVQGGFQSWV 393 (479)
Q Consensus 345 Is~Lk~~~kd~~IVVyC~-sG~rS~~AA~~L~~~------------Gf~nV~vL~GG~~aW~ 393 (479)
.+++++||+||. +|.||..+++.|+.. ||++|++|+|||.+|.
T Consensus 65 ------~~~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 65 ------KKKRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred ------cCCCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 278999999997 999999999999985 9999999999999984
No 34
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.68 E-value=7.6e-17 Score=146.00 Aligned_cols=108 Identities=23% Similarity=0.255 Sum_probs=89.6
Q ss_pred cCHHHHHHHHhC---CCCcEEEEcCCh--------hhhhh------------cCCCCccccccccccccCccccc---ch
Q 011705 272 LSPKSTLELLRG---KENAVLIDVRHE--------DLRER------------DGIPDLRRGARFRYASVYLPEVG---GS 325 (479)
Q Consensus 272 ISp~El~elL~~---~~~~vLIDVRs~--------~Ef~~------------gHIPGA~~av~~~~~nIPl~el~---~~ 325 (479)
++++++.+.+.. +++.+|||+|+. .+|.. ||||||+ ++|+.++. ..
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv--------~~~~~~~~~~~~~ 72 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGAS--------FFDFEECLDEAGF 72 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCE--------eeCHHHhhCcCCC
Confidence 578899999852 467999999987 89988 9999998 66654332 22
Q ss_pred hHhhhcCchhhhHHHHHHHHhhhccCCCCcEEEEEeCC---CchHHHHHHHHHHccCCCEEEecccHHHHH
Q 011705 326 VKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD---GTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (479)
Q Consensus 326 l~~ll~~~~~L~~ll~alGIs~Lk~~~kd~~IVVyC~s---G~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~ 393 (479)
...++++++.+++.+.++|| +++++||+||.+ |.++.++++.|+.+||++|++|+||+.+|+
T Consensus 73 ~~~~~p~~~~~~~~~~~~GI------~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 73 EESMEPSEAEFAAMFEAKGI------DLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred CCCCCCCHHHHHHHHHHcCC------CCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 33456667789999999999 788999999986 678999999999999999999999999996
No 35
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.68 E-value=7.2e-17 Score=141.43 Aligned_cols=104 Identities=26% Similarity=0.338 Sum_probs=81.4
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhhh-hcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHHHHHHhhhcc
Q 011705 272 LSPKSTLELLRGKENAVLIDVRHEDLRE-RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (479)
Q Consensus 272 ISp~El~elL~~~~~~vLIDVRs~~Ef~-~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGIs~Lk~ 350 (479)
|+++++.++++++++.++||||++.||+ .+|||||+ |+|+.++.... ++..+... +.. .
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~--------~ip~~~~~~~~----~~~~~~~~-l~~-------~ 60 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAV--------HVAWQVYPDME----INPNFLAE-LEE-------K 60 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCce--------ecchhhccccc----cCHHHHHH-HHh-------h
Confidence 6899999999755689999999999999 99999998 88875543211 01111111 111 1
Q ss_pred CCCCcEEEEEeCCCchHHHHHHHHHHccCCCEEEecccHHHHHHc
Q 011705 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKE 395 (479)
Q Consensus 351 ~~kd~~IVVyC~sG~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~aa 395 (479)
.+++++||+||++|.+|..+++.|+.+||++++.+.||+++|+..
T Consensus 61 ~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~~~~~ 105 (117)
T cd01522 61 VGKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEGDLDA 105 (117)
T ss_pred CCCCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceecCCCC
Confidence 257899999999999999999999999999999999999999653
No 36
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.67 E-value=1.4e-16 Score=134.92 Aligned_cols=95 Identities=32% Similarity=0.502 Sum_probs=80.9
Q ss_pred HHHhCCCCcEEEEcCChhhhhhcCCCC-ccccccccccccCcccccchhHhhhcCchhhhHHHHHHHHhhhccCCCCcEE
Q 011705 279 ELLRGKENAVLIDVRHEDLRERDGIPD-LRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKV 357 (479)
Q Consensus 279 elL~~~~~~vLIDVRs~~Ef~~gHIPG-A~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGIs~Lk~~~kd~~I 357 (479)
..+...++.+|||||++.||+.+|||| +. ++|+.++........ .++++++
T Consensus 13 ~~~~~~~~~~liDvR~~~e~~~~~i~~~~~--------~ip~~~~~~~~~~~~--------------------~~~~~~i 64 (110)
T COG0607 13 ALLLAGEDAVLLDVREPEEYERGHIPGAAI--------NIPLSELKAAENLLE--------------------LPDDDPI 64 (110)
T ss_pred HHhhccCCCEEEeccChhHhhhcCCCccee--------eeecccchhhhcccc--------------------cCCCCeE
Confidence 333346789999999999999999999 87 899877765433210 1689999
Q ss_pred EEEeCCCchHHHHHHHHHHccCCCEEEecccHHHHHHcCCCccc
Q 011705 358 IVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKE 401 (479)
Q Consensus 358 VVyC~sG~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~aaGLPV~~ 401 (479)
|+||++|.||..++..|+.+||++++++.||+.+|...++|+..
T Consensus 65 vv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~~~w~~~~~~~~~ 108 (110)
T COG0607 65 VVYCASGVRSAAAAAALKLAGFTNVYNLDGGIDAWKGAGLPLVR 108 (110)
T ss_pred EEEeCCCCChHHHHHHHHHcCCccccccCCcHHHHHhcCCCccc
Confidence 99999999999999999999999999999999999999998865
No 37
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.67 E-value=1.4e-16 Score=133.76 Aligned_cols=87 Identities=23% Similarity=0.278 Sum_probs=70.0
Q ss_pred CCCcEEEEcCChhhhhhcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHHHHHHhhhccCCCCcEEEEEeCC
Q 011705 284 KENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD 363 (479)
Q Consensus 284 ~~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGIs~Lk~~~kd~~IVVyC~s 363 (479)
+++.+|||||++.+|..+|||||+ |+|+.++...... ++ .++ ..+++++||+||++
T Consensus 10 ~~~~~iiDvR~~~~~~~~hIpgA~--------~ip~~~~~~~~~~-------~~----~~~-----~~~~~~~ivv~c~~ 65 (96)
T cd01529 10 EPGTALLDVRAEDEYAAGHLPGKR--------SIPGAALVLRSQE-------LQ----ALE-----APGRATRYVLTCDG 65 (96)
T ss_pred CCCeEEEeCCCHHHHcCCCCCCcE--------eCCHHHhcCCHHH-------HH----Hhh-----cCCCCCCEEEEeCC
Confidence 467899999999999999999998 8886544322111 11 111 13678999999999
Q ss_pred CchHHHHHHHHHHccCCCEEEecccHHHHHH
Q 011705 364 GTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (479)
Q Consensus 364 G~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~a 394 (479)
|.+|..+++.|+..||++|++|+||+.+|.+
T Consensus 66 g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 96 (96)
T cd01529 66 SLLARFAAQELLALGGKPVALLDGGTSAWVA 96 (96)
T ss_pred hHHHHHHHHHHHHcCCCCEEEeCCCHHHhcC
Confidence 9999999999999999999999999999963
No 38
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.67 E-value=1.2e-16 Score=175.69 Aligned_cols=120 Identities=18% Similarity=0.218 Sum_probs=101.1
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCCccccccccccccCccccc---chhHhhhcCchhhhHHHHHHHHh
Q 011705 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVG---GSVKKLLRGGRELDDTLTAAVIR 346 (479)
Q Consensus 270 g~ISp~El~elL~~~~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~---~~l~~ll~~~~~L~~ll~alGIs 346 (479)
..|+++++.+++. +++.+|||+|++.+|..||||||+ ++|+.... .....++++++.+++.+.++||
T Consensus 9 ~lIs~~eL~~~l~-~~~vvIIDvR~~~eY~~GHIPGAv--------~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI- 78 (610)
T PRK09629 9 LVIEPNDLLERLD-APELILVDLTSSARYEAGHIRGAR--------FVDPKRTQLGKPPAPGLLPDTADLEQLFGELGH- 78 (610)
T ss_pred ceecHHHHHHHhc-CCCEEEEECCChHHHHhCCCCCcE--------EcChhHhhccCCCCCCCCCCHHHHHHHHHHcCC-
Confidence 3599999999994 678999999999999999999998 66543211 1123456777789999999999
Q ss_pred hhccCCCCcEEEEEeCCCc-hHHHHHHHHHHccCCCEEEecccHHHHHHcCCCcccccc
Q 011705 347 NLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKS 404 (479)
Q Consensus 347 ~Lk~~~kd~~IVVyC~sG~-rS~~AA~~L~~~Gf~nV~vL~GG~~aW~aaGLPV~~~~p 404 (479)
+++++||+||++|. ++.+++|.|+.+||++|++|+||+.+|..+|+|+.+..+
T Consensus 79 -----~~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~~ 132 (610)
T PRK09629 79 -----NPDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDVP 132 (610)
T ss_pred -----CCCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCCC
Confidence 78999999999875 788999999999999999999999999999999976643
No 39
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.67 E-value=2.7e-17 Score=170.24 Aligned_cols=169 Identities=21% Similarity=0.277 Sum_probs=118.5
Q ss_pred ccCCCCCCCchHH--HhhhhhHhhhhhcccccchHHHHHHHHHHHHHhcCCCC--CCCcchhhHHhhhhhhHHHHHHHHH
Q 011705 189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTSATLWIFYWWWT 264 (479)
Q Consensus 189 G~~~~~l~p~~~~--~~~~~e~~~~~v~~p~g~~~~qv~~~le~l~~~lg~~~--~~PvL~~~v~~g~~~al~l~~~l~~ 264 (479)
|||++|++|+.++ .+..|.+.+ |++|+.+..+ ..++.|.++-++|+.. .+.++ .+.....-+-.+.+.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~c~~~g--v~g~~~~~~g-~~~a~e~ik~l~g~~~~l~~~l~----~~d~~~~~~~~~~~~~ 238 (355)
T PRK05597 166 GPIYEDLFPTPPPPGSVPSCSQAG--VLGPVVGVVG-SAMAMEALKLITGVGTPLIGKLG----YYDSLDGTWEYIPVVG 238 (355)
T ss_pred CCCHHHhCCCCCCccCCCCccccC--cchhHHHHHH-HHHHHHHHHHHhCCCCcCcCeEE----EEECCCCeEEEEeccC
Confidence 5899999997643 456788888 9999999999 7788899998888632 11122 1111110000000000
Q ss_pred hc-----------------CCCCccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCCccccccccccccCcccccchhH
Q 011705 265 YG-----------------GYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVK 327 (479)
Q Consensus 265 ~~-----------------~~~g~ISp~El~elL~~~~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~l~ 327 (479)
.. +....++++++.++. ++.+|||||++.||+.+|||||+ |+|+.++.....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~IIDVR~~~ef~~ghIpgAi--------nip~~~l~~~~~ 307 (355)
T PRK05597 239 NPAVLERVRGSTPVHGISGGFGEVLDVPRVSALP---DGVTLIDVREPSEFAAYSIPGAH--------NVPLSAIREGAN 307 (355)
T ss_pred CCCCccccccccccccccCCcccccCHHHHHhcc---CCCEEEECCCHHHHccCcCCCCE--------EeCHHHhhhccc
Confidence 00 001145666776443 46799999999999999999999 899766543211
Q ss_pred hhhcCchhhhHHHHHHHHhhhccCCCCcEEEEEeCCCchHHHHHHHHHHccCCCEEEecccHHHHHHc
Q 011705 328 KLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKE 395 (479)
Q Consensus 328 ~ll~~~~~L~~ll~alGIs~Lk~~~kd~~IVVyC~sG~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~aa 395 (479)
.. .++++++||+||++|.||..+++.|+..||++|++|+||+.+|.++
T Consensus 308 ~~--------------------~~~~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~~ 355 (355)
T PRK05597 308 PP--------------------SVSAGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEGWLDS 355 (355)
T ss_pred cc--------------------cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHHHHhhC
Confidence 00 1267889999999999999999999999999999999999999763
No 40
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.67 E-value=1.2e-16 Score=133.88 Aligned_cols=84 Identities=26% Similarity=0.351 Sum_probs=68.3
Q ss_pred CCCCcEEEEcCChhhhhhcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHHHHHHhhhccCCCCcEEEEEeC
Q 011705 283 GKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDA 362 (479)
Q Consensus 283 ~~~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGIs~Lk~~~kd~~IVVyC~ 362 (479)
++++++|||+|++.||..+||||++ ++|+.++...... .+ .+++++||+||.
T Consensus 7 ~~~~~~liDvR~~~e~~~~hi~ga~--------~ip~~~~~~~~~~---------------~~-----~~~~~~ivl~c~ 58 (92)
T cd01532 7 AREEIALIDVREEDPFAQSHPLWAA--------NLPLSRLELDAWV---------------RI-----PRRDTPIVVYGE 58 (92)
T ss_pred cCCCeEEEECCCHHHHhhCCcccCe--------eCCHHHHHhhhHh---------------hC-----CCCCCeEEEEeC
Confidence 4567999999999999999999998 8887554321100 00 135889999999
Q ss_pred CCch--HHHHHHHHHHccCCCEEEecccHHHHHH
Q 011705 363 DGTR--SKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (479)
Q Consensus 363 sG~r--S~~AA~~L~~~Gf~nV~vL~GG~~aW~a 394 (479)
+|.+ |..+++.|+..||++|++|+||+.+|.+
T Consensus 59 ~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 59 GGGEDLAPRAARRLSELGYTDVALLEGGLQGWRA 92 (92)
T ss_pred CCCchHHHHHHHHHHHcCccCEEEccCCHHHHcC
Confidence 9987 6899999999999999999999999963
No 41
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.65 E-value=5.1e-16 Score=134.44 Aligned_cols=100 Identities=18% Similarity=0.272 Sum_probs=78.8
Q ss_pred ccCHHHHHHHHhCC-CCcEEEEcCChhhhhhcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHHHHHHhhhc
Q 011705 271 DLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (479)
Q Consensus 271 ~ISp~El~elL~~~-~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGIs~Lk 349 (479)
.|+++++.+++.++ ++.+|||||++ ||..+|||||+ ++|+.++......+ ....++
T Consensus 3 ~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~--------~ip~~~l~~~~~~~----------~~~~~~---- 59 (113)
T cd01531 3 YISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSW--------HYPSTRFKAQLNQL----------VQLLSG---- 59 (113)
T ss_pred cCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCE--------ecCHHHHhhCHHHH----------HHHHhc----
Confidence 58999999998654 56789999999 99999999999 88887654433321 122222
Q ss_pred cCCCCcEEEEEeC-CCchHHHHHHHHHH--------ccCCCEEEecccHHHHHHc
Q 011705 350 IVQDRSKVIVMDA-DGTRSKGIARSLRK--------LGVMRAFLVQGGFQSWVKE 395 (479)
Q Consensus 350 ~~~kd~~IVVyC~-sG~rS~~AA~~L~~--------~Gf~nV~vL~GG~~aW~aa 395 (479)
+++++||+||. +|.|+..+++.|.+ .||++|++|+||+.+|++.
T Consensus 60 --~~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 60 --SKKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred --CCCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 56789999998 66789888887754 4999999999999999864
No 42
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.64 E-value=6e-16 Score=160.98 Aligned_cols=105 Identities=27% Similarity=0.391 Sum_probs=89.1
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHHHHHHhhhc
Q 011705 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (479)
Q Consensus 270 g~ISp~El~elL~~~~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGIs~Lk 349 (479)
..|+++++.++++ ++.+|||||++.||..+|||||+ |+|+.++.....+. +
T Consensus 3 ~~is~~el~~~l~--~~~~ivDvR~~~e~~~ghIpgAi--------~ip~~~l~~~~~~~--------------~----- 53 (376)
T PRK08762 3 REISPAEARARAA--QGAVLIDVREAHERASGQAEGAL--------RIPRGFLELRIETH--------------L----- 53 (376)
T ss_pred ceeCHHHHHHHHh--CCCEEEECCCHHHHhCCcCCCCE--------ECCHHHHHHHHhhh--------------c-----
Confidence 3589999999985 35899999999999999999999 88875543322211 1
Q ss_pred cCCCCcEEEEEeCCCchHHHHHHHHHHccCCCEEEecccHHHHHHcCCCcccccc
Q 011705 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKS 404 (479)
Q Consensus 350 ~~~kd~~IVVyC~sG~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~aaGLPV~~~~p 404 (479)
.+++++||+||++|.||..+++.|+..||++|++|+||+.+|++.|+|++..+.
T Consensus 54 -~~~~~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~ 107 (376)
T PRK08762 54 -PDRDREIVLICASGTRSAHAAATLRELGYTRVASVAGGFSAWKDAGLPLERPRL 107 (376)
T ss_pred -CCCCCeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcHHHHHhcCCccccccC
Confidence 167899999999999999999999999999999999999999999999987654
No 43
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.62 E-value=1.6e-16 Score=165.37 Aligned_cols=168 Identities=17% Similarity=0.196 Sum_probs=116.7
Q ss_pred ccCCCCCCCchHH--HhhhhhHhhhhhcccccchHHHHHHHHHHHHHhcCCCC--CCCcchhhHHhhhhhhHHHHHHHHH
Q 011705 189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTSATLWIFYWWWT 264 (479)
Q Consensus 189 G~~~~~l~p~~~~--~~~~~e~~~~~v~~p~g~~~~qv~~~le~l~~~lg~~~--~~PvL~~~v~~g~~~al~l~~~l~~ 264 (479)
++|++|++|+..+ .+.+|.+.+ |++|..+..+ ..++.|.++-++|+.+ .+.++. +.....-+-.+- |.
T Consensus 182 ~~~~~~l~~~~~~~~~~~~c~~~g--vlg~~~~~ig-~~~a~eaik~l~g~g~~l~g~ll~----~d~~~~~~~~~~-~~ 253 (370)
T PRK05600 182 GVGLRDLFPEQPSGDSIPDCATAG--VLGATTAVIG-ALMATEAIKFLTGIGDVQPGTVLS----YDALTATTRSFR-VG 253 (370)
T ss_pred CCCcHhhCCCCCccccCCCCccCC--cchhHHHHHH-HHHHHHHHHHHhCCCCCCcCcEEE----EECCCCEEEEEE-ec
Confidence 5899999997543 455787777 9999999999 7888899999988732 122321 111111110000 11
Q ss_pred hcC-----------C-CCccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCC---CccccccccccccCcccccchhHhh
Q 011705 265 YGG-----------Y-SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIP---DLRRGARFRYASVYLPEVGGSVKKL 329 (479)
Q Consensus 265 ~~~-----------~-~g~ISp~El~elL~~~~~~vLIDVRs~~Ef~~gHIP---GA~~av~~~~~nIPl~el~~~l~~l 329 (479)
.+. | .-+++++++.+++. +++.+|||||++.||+.+||| ||+ |+|+.++......
T Consensus 254 ~~~~c~~~~~~~~~~~~~~~~~~el~~~l~-~~~~~lIDVR~~~E~~~ghI~~~~gAi--------nIPl~~l~~~~~~- 323 (370)
T PRK05600 254 ADPARPLVTRLRPSYEAARTDTTSLIDATL-NGSATLLDVREPHEVLLKDLPEGGASL--------KLPLSAITDDADI- 323 (370)
T ss_pred CCCCCCccccccCcchhcccCHHHHHHHHh-cCCeEEEECCCHHHhhhccCCCCCccE--------eCcHHHhhcchhh-
Confidence 100 1 12578999999985 456799999999999999999 477 8998776432100
Q ss_pred hcCchhhhHHHHHHHHhhhccCCCCcEEEEEeCCCchHHHHHHHHHHccCCC-EEEecccHH
Q 011705 330 LRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMR-AFLVQGGFQ 390 (479)
Q Consensus 330 l~~~~~L~~ll~alGIs~Lk~~~kd~~IVVyC~sG~rS~~AA~~L~~~Gf~n-V~vL~GG~~ 390 (479)
.. .+...+++ +||+||++|.||..+++.|++.||++ |++|.||+.
T Consensus 324 ------~~---------~l~~~~~~-~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 324 ------LH---------ALSPIDGD-NVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred ------hh---------hccccCCC-cEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 00 00112444 99999999999999999999999996 999999975
No 44
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.62 E-value=8.7e-16 Score=124.36 Aligned_cols=88 Identities=30% Similarity=0.446 Sum_probs=72.3
Q ss_pred HHHHHhCCCCcEEEEcCChhhhhhcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHHHHHHhhhccCCCCcE
Q 011705 277 TLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSK 356 (479)
Q Consensus 277 l~elL~~~~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGIs~Lk~~~kd~~ 356 (479)
+.+++. +++..|||+|++.+|..+|||||. ++|...+..... ..+ .+++++
T Consensus 2 ~~~~~~-~~~~~iiD~R~~~~~~~~~i~ga~--------~~~~~~~~~~~~--------------~~~------~~~~~~ 52 (89)
T cd00158 2 LKELLD-DEDAVLLDVREPEEYAAGHIPGAI--------NIPLSELEERAA--------------LLE------LDKDKP 52 (89)
T ss_pred hHHHhc-CCCeEEEECCCHHHHhccccCCCE--------ecchHHHhhHHH--------------hhc------cCCCCe
Confidence 345553 578999999999999999999998 888755432210 011 278999
Q ss_pred EEEEeCCCchHHHHHHHHHHccCCCEEEecccHHHHH
Q 011705 357 VIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (479)
Q Consensus 357 IVVyC~sG~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~ 393 (479)
||+||..|.++..+++.|+..||+++++|+||+.+|.
T Consensus 53 vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 53 IVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGMLAWK 89 (89)
T ss_pred EEEEeCCCchHHHHHHHHHHhCcccEEEecCChhhcC
Confidence 9999999999999999999999999999999999994
No 45
>PRK01415 hypothetical protein; Validated
Probab=99.61 E-value=2.1e-15 Score=149.29 Aligned_cols=102 Identities=15% Similarity=0.230 Sum_probs=84.1
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHHHHHHhhhc
Q 011705 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (479)
Q Consensus 270 g~ISp~El~elL~~~~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGIs~Lk 349 (479)
..|+|+++.++++ ++++++||||++.||..||||||+ |+|+..+.+.... +.. ..
T Consensus 112 ~~i~p~e~~~ll~-~~~~vvIDVRn~~E~~~Ghi~gAi--------nip~~~f~e~~~~-------~~~---------~~ 166 (247)
T PRK01415 112 EYIEPKDWDEFIT-KQDVIVIDTRNDYEVEVGTFKSAI--------NPNTKTFKQFPAW-------VQQ---------NQ 166 (247)
T ss_pred cccCHHHHHHHHh-CCCcEEEECCCHHHHhcCCcCCCC--------CCChHHHhhhHHH-------Hhh---------hh
Confidence 3699999999995 678999999999999999999999 8887555432111 000 01
Q ss_pred cCCCCcEEEEEeCCCchHHHHHHHHHHccCCCEEEecccHHHHHHcC
Q 011705 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEG 396 (479)
Q Consensus 350 ~~~kd~~IVVyC~sG~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~aaG 396 (479)
..+++++|++||.+|.||..++..|++.||++||+|+||+.+|.+..
T Consensus 167 ~~~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~ 213 (247)
T PRK01415 167 ELLKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQYLEDT 213 (247)
T ss_pred hhcCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHHHHHhc
Confidence 12788999999999999999999999999999999999999998754
No 46
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.60 E-value=2.4e-15 Score=151.59 Aligned_cols=120 Identities=21% Similarity=0.233 Sum_probs=99.7
Q ss_pred ccCHHHHHHHHhCCC-----CcEEEEcCCh--hhhhhcCCCCccccccccccccCccccc-ch--hHhhhcCchhhhHHH
Q 011705 271 DLSPKSTLELLRGKE-----NAVLIDVRHE--DLRERDGIPDLRRGARFRYASVYLPEVG-GS--VKKLLRGGRELDDTL 340 (479)
Q Consensus 271 ~ISp~El~elL~~~~-----~~vLIDVRs~--~Ef~~gHIPGA~~av~~~~~nIPl~el~-~~--l~~ll~~~~~L~~ll 340 (479)
-++++++.+.+. ++ ++.+++++.. .+|.++|||||+ .+++.... .. ..+++++++++++++
T Consensus 12 lVs~~wl~~~l~-~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv--------~~d~~~~~~~~~~~~~~lp~~e~fa~~~ 82 (285)
T COG2897 12 LVSPDWLAENLD-DPAVVIVDARIILPDPDDAEEYLEGHIPGAV--------FFDWEADLSDPVPLPHMLPSPEQFAKLL 82 (285)
T ss_pred EEcHHHHHhhcc-ccccccCceEEEeCCcchHHHHHhccCCCCE--------ecCHHHhhcCCCCCCCCCCCHHHHHHHH
Confidence 489999999884 34 6677777766 899999999997 44442222 22 367889999999999
Q ss_pred HHHHHhhhccCCCCcEEEEEeCCCc-hHHHHHHHHHHccCCCEEEecccHHHHHHcCCCccccccc
Q 011705 341 TAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKSE 405 (479)
Q Consensus 341 ~alGIs~Lk~~~kd~~IVVyC~sG~-rS~~AA~~L~~~Gf~nV~vL~GG~~aW~aaGLPV~~~~p~ 405 (479)
.++|| ..|++||+|+..+. .|.+++|.|+.+|+++|++|+||+.+|+++|+|++..++.
T Consensus 83 ~~~GI------~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~~ 142 (285)
T COG2897 83 GELGI------RNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPPE 142 (285)
T ss_pred HHcCC------CCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCCC
Confidence 99999 78999999997666 7899999999999999999999999999999999876654
No 47
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.60 E-value=2.5e-15 Score=130.30 Aligned_cols=98 Identities=18% Similarity=0.313 Sum_probs=74.8
Q ss_pred ccCHHHHHHHHhCC-----CCcEEEEcCChhhhhhcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHHHHHH
Q 011705 271 DLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVI 345 (479)
Q Consensus 271 ~ISp~El~elL~~~-----~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGI 345 (479)
.|+++++.+++.++ ++.+|||||++ ||..+|||||+ |+|+.++...+.+. +.....
T Consensus 3 ~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi--------~ip~~~~~~~~~~~----------~~~~~~ 63 (113)
T cd01443 3 YISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSI--------NLPAQSCYQTLPQV----------YALFSL 63 (113)
T ss_pred ccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCce--------ecchhHHHHHHHHH----------HHHhhh
Confidence 58999999999654 46899999999 99999999999 89986665443332 111111
Q ss_pred hhhccCCCCcEEEEEeCC-CchHHHHHHHHH----HccC--CCEEEecccHHHHH
Q 011705 346 RNLKIVQDRSKVIVMDAD-GTRSKGIARSLR----KLGV--MRAFLVQGGFQSWV 393 (479)
Q Consensus 346 s~Lk~~~kd~~IVVyC~s-G~rS~~AA~~L~----~~Gf--~nV~vL~GG~~aW~ 393 (479)
.+.++||+||.+ |.||..++..|. +.|| .++++|+||+.+|.
T Consensus 64 ------~~~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 64 ------AGVKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred ------cCCCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 456789999997 578888776644 4475 78999999999995
No 48
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.60 E-value=3.2e-15 Score=129.00 Aligned_cols=81 Identities=20% Similarity=0.208 Sum_probs=68.6
Q ss_pred CCcEEEEcCChhhhhhcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHHHHHHhhhccCCCCcEEEEEeCCC
Q 011705 285 ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADG 364 (479)
Q Consensus 285 ~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGIs~Lk~~~kd~~IVVyC~sG 364 (479)
....+||+|++.||..+|||||+ |+|+.++...+.++ + .+++++||+||++|
T Consensus 17 ~~~~lIDvR~~~ef~~ghIpgAi--------nip~~~l~~~l~~~--------------~------~~~~~~vvlyC~~G 68 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQGAI--------NIPLKEIKEHIATA--------------V------PDKNDTVKLYCNAG 68 (101)
T ss_pred cCCEEEECCCHHHHhcCCCCCCE--------ECCHHHHHHHHHHh--------------C------CCCCCeEEEEeCCC
Confidence 45689999999999999999999 99986665433321 1 15778999999999
Q ss_pred chHHHHHHHHHHccCCCEEEecccHHHHHH
Q 011705 365 TRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (479)
Q Consensus 365 ~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~a 394 (479)
.||..++..|+..||++++++ ||+.+|..
T Consensus 69 ~rS~~aa~~L~~~G~~~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 69 RQSGMAKDILLDMGYTHAENA-GGIKDIAM 97 (101)
T ss_pred HHHHHHHHHHHHcCCCeEEec-CCHHHhhh
Confidence 999999999999999999985 99999975
No 49
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.58 E-value=5e-15 Score=147.40 Aligned_cols=102 Identities=13% Similarity=0.180 Sum_probs=82.7
Q ss_pred CccCHHHHHHHHhCC-----CCcEEEEcCChhhhhhcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHHHHH
Q 011705 270 GDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAV 344 (479)
Q Consensus 270 g~ISp~El~elL~~~-----~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alG 344 (479)
..++++++.+++++. ++.+|||||++.||+.||||||+ |+|+.++.....++ ...
T Consensus 110 ~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAi--------niPl~~f~~~~~~l-------~~~----- 169 (257)
T PRK05320 110 PSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGAL--------DYRIDKFTEFPEAL-------AAH----- 169 (257)
T ss_pred ceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCE--------eCChhHhhhhHHHH-------Hhh-----
Confidence 469999999988542 35899999999999999999999 99986665432221 100
Q ss_pred HhhhccCCCCcEEEEEeCCCchHHHHHHHHHHccCCCEEEecccHHHHHHc
Q 011705 345 IRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKE 395 (479)
Q Consensus 345 Is~Lk~~~kd~~IVVyC~sG~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~aa 395 (479)
+ ...++++|++||.+|.||..++..|+..||++|++|+||+.+|.+.
T Consensus 170 ---~-~~~kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~ 216 (257)
T PRK05320 170 ---R-ADLAGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFEE 216 (257)
T ss_pred ---h-hhcCCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence 0 0126889999999999999999999999999999999999999873
No 50
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.56 E-value=7.9e-15 Score=127.32 Aligned_cols=82 Identities=21% Similarity=0.229 Sum_probs=68.1
Q ss_pred CCCcEEEEcCChhhhhhcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHHHHHHhhhccCCCCcEEEEEeCC
Q 011705 284 KENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD 363 (479)
Q Consensus 284 ~~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGIs~Lk~~~kd~~IVVyC~s 363 (479)
..+-+|||+|++.||+.+|||||+ |+|+.++...+.. ++. +++++||+||++
T Consensus 18 ~~~~~lIDvR~~~ef~~ghIpGAi--------niP~~~l~~~l~~--------------l~~------~~~~~IVlyC~~ 69 (104)
T PRK10287 18 FAAEHWIDVRVPEQYQQEHVQGAI--------NIPLKEVKERIAT--------------AVP------DKNDTVKLYCNA 69 (104)
T ss_pred cCCCEEEECCCHHHHhcCCCCccE--------ECCHHHHHHHHHh--------------cCC------CCCCeEEEEeCC
Confidence 345579999999999999999999 8997655433322 111 567899999999
Q ss_pred CchHHHHHHHHHHccCCCEEEecccHHHHHH
Q 011705 364 GTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (479)
Q Consensus 364 G~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~a 394 (479)
|.||..+++.|...||+++++ .||+.+|.-
T Consensus 70 G~rS~~aa~~L~~~G~~~v~~-~GG~~~~~~ 99 (104)
T PRK10287 70 GRQSGQAKEILSEMGYTHAEN-AGGLKDIAM 99 (104)
T ss_pred ChHHHHHHHHHHHcCCCeEEe-cCCHHHHhh
Confidence 999999999999999999987 699999974
No 51
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.56 E-value=1.1e-14 Score=148.72 Aligned_cols=101 Identities=18% Similarity=0.241 Sum_probs=83.7
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHHHHHHhhhc
Q 011705 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (479)
Q Consensus 270 g~ISp~El~elL~~~~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGIs~Lk 349 (479)
..++++++.+++. +++.+|||||++.||+.||||||+ |+|+.++.+.... +. ..++
T Consensus 112 ~~is~~el~~~l~-~~~~vlIDVR~~~E~~~GhI~GAi--------~ip~~~~~~~~~~-------l~---~~~~----- 167 (314)
T PRK00142 112 TYLKPKEVNELLD-DPDVVFIDMRNDYEYEIGHFENAI--------EPDIETFREFPPW-------VE---ENLD----- 167 (314)
T ss_pred cccCHHHHHHHhc-CCCeEEEECCCHHHHhcCcCCCCE--------eCCHHHhhhhHHH-------HH---HhcC-----
Confidence 4699999999984 678999999999999999999999 8888666443221 11 1111
Q ss_pred cCCCCcEEEEEeCCCchHHHHHHHHHHccCCCEEEecccHHHHHHc
Q 011705 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKE 395 (479)
Q Consensus 350 ~~~kd~~IVVyC~sG~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~aa 395 (479)
..++++||+||.+|.||..++..|+..||++|++|+||+.+|...
T Consensus 168 -~~kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~~ 212 (314)
T PRK00142 168 -PLKDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIITYGED 212 (314)
T ss_pred -CCCcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHHHHHh
Confidence 257899999999999999999999999999999999999999863
No 52
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.45 E-value=3.9e-13 Score=119.46 Aligned_cols=106 Identities=21% Similarity=0.275 Sum_probs=74.7
Q ss_pred ccCHHHHHHHHhCC-CCcEEEEcCChhhhhhcCCCCccccccccccccCcccccchh--------HhhhcCchhhhHHHH
Q 011705 271 DLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSV--------KKLLRGGRELDDTLT 341 (479)
Q Consensus 271 ~ISp~El~elL~~~-~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~l--------~~ll~~~~~L~~ll~ 341 (479)
.|+|+++.++++.+ ++.+|||+|++.+|..+|||||+ ++|+..+..+- ..+++.+...+
T Consensus 1 ~is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai--------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 68 (132)
T cd01446 1 TIDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAV--------NVCCPTILRRRLQGGKILLQQLLSCPEDRD---- 68 (132)
T ss_pred CcCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcE--------ecChHHHHHHhhcccchhhhhhcCCHHHHH----
Confidence 37999999999644 57999999999999999999998 77765422100 00111111111
Q ss_pred HHHHhhhccCCCCcEEEEEeCCCch---------HHHHHHHHHH--ccCCCEEEecccHHHHHH
Q 011705 342 AAVIRNLKIVQDRSKVIVMDADGTR---------SKGIARSLRK--LGVMRAFLVQGGFQSWVK 394 (479)
Q Consensus 342 alGIs~Lk~~~kd~~IVVyC~sG~r---------S~~AA~~L~~--~Gf~nV~vL~GG~~aW~a 394 (479)
. +.. .++++|||||.++.+ +..+++.|.. .|+.+|++|+||+.+|++
T Consensus 69 ~-----l~~-~~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~ 126 (132)
T cd01446 69 R-----LRR-GESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSS 126 (132)
T ss_pred H-----Hhc-CCCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHh
Confidence 1 111 257899999998865 5566666766 477899999999999976
No 53
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.45 E-value=2.9e-13 Score=139.99 Aligned_cols=113 Identities=18% Similarity=0.221 Sum_probs=80.0
Q ss_pred CHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCCccccccccccccCcccccch-----------------hHhhhcCchh
Q 011705 273 SPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS-----------------VKKLLRGGRE 335 (479)
Q Consensus 273 Sp~El~elL~~~~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~-----------------l~~ll~~~~~ 335 (479)
...++.+++ .++.+|||||+|.||.+||||||+ |+|+.+..++ ++..+.+++
T Consensus 4 ~~~~~~~~~--~~~~~lIDVRsp~Ef~~ghIpgAi--------niPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~- 72 (345)
T PRK11784 4 DAQDFRALF--LNDTPLIDVRSPIEFAEGHIPGAI--------NLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGN- 72 (345)
T ss_pred cHHHHHHHH--hCCCEEEECCCHHHHhcCCCCCee--------eCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchh-
Confidence 456677765 357899999999999999999999 8887432211 111111111
Q ss_pred hhHHHHHHHHhhhccCC-CCcEEEEEe-CCCchHHHHHHHHHHccCCCEEEecccHHHHHHcCCCccc
Q 011705 336 LDDTLTAAVIRNLKIVQ-DRSKVIVMD-ADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKE 401 (479)
Q Consensus 336 L~~ll~alGIs~Lk~~~-kd~~IVVyC-~sG~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~aaGLPV~~ 401 (479)
+.+.+... +...+ ++++||+|| ++|.||..+++.|...|| ++++|+||+.+|++.+++...
T Consensus 73 l~~~~~~~----~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~~~~ 135 (345)
T PRK11784 73 IAAHREEA----WADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVIDTLE 135 (345)
T ss_pred HHHHHHHH----HHhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHHHHh
Confidence 11111111 11122 788999999 578899999999999999 699999999999998876654
No 54
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.40 E-value=9.9e-13 Score=134.35 Aligned_cols=104 Identities=19% Similarity=0.202 Sum_probs=72.3
Q ss_pred CcEEEEcCChhhhhhcCCCCccccccccccccCcccccch--hHhhhcCch--------------hhhHHHHHHHHhhhc
Q 011705 286 NAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS--VKKLLRGGR--------------ELDDTLTAAVIRNLK 349 (479)
Q Consensus 286 ~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~--l~~ll~~~~--------------~L~~ll~alGIs~Lk 349 (479)
+.+|||||+|.||.+||||||+ |+|+-+..++ ++.+.+... .+...+.+. ++
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAi--------niPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~----~~ 69 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAI--------NLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQW----RA 69 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCE--------ecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHH----Hh
Confidence 4689999999999999999999 8997332211 111111000 011111111 01
Q ss_pred cCCCCcEEEEEeC-CCchHHHHHHHHHHccCCCEEEecccHHHHHHcCCCcccc
Q 011705 350 IVQDRSKVIVMDA-DGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKEL 402 (479)
Q Consensus 350 ~~~kd~~IVVyC~-sG~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~aaGLPV~~~ 402 (479)
..+++++||+||. +|.||..+++.|+.+|| ++++|+||+.+|+..+++....
T Consensus 70 ~~~~~~~vvvyC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~~~~ 122 (311)
T TIGR03167 70 FADGPPQPLLYCWRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQLEE 122 (311)
T ss_pred hcCCCCcEEEEECCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhhhhc
Confidence 1244556999994 78899999999999999 7999999999999998877654
No 55
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.06 E-value=6.6e-10 Score=111.42 Aligned_cols=122 Identities=18% Similarity=0.293 Sum_probs=96.9
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcC---------ChhhhhhcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHH
Q 011705 271 DLSPKSTLELLRGKENAVLIDVR---------HEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLT 341 (479)
Q Consensus 271 ~ISp~El~elL~~~~~~vLIDVR---------s~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~ 341 (479)
-++++++.+.+. +++.+|||.. ...||..-|||||. ++++..+.+ -....+.+++.++.+++-.+
T Consensus 6 iv~~~~v~~~~~-~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~---~fdld~~~~--~s~~~~~~lp~~e~Fa~y~~ 79 (286)
T KOG1529|consen 6 IVSVKWVMENLG-NHGLRILDASWYFPPLRRIAEFEFLERHIPGAS---HFDLDIISY--PSSPYRHMLPTAEHFAEYAS 79 (286)
T ss_pred ccChHHHHHhCc-CCCeEEEeeeeecCchhhhhhhhhhhccCCCce---eeecccccc--CCCcccccCccHHHHHHHHH
Confidence 478888888885 4789999984 35688888999875 454433322 12334556777777788888
Q ss_pred HHHHhhhccCCCCcEEEEEeC--CCc-hHHHHHHHHHHccCCCEEEecccHHHHHHcCCCcccccc
Q 011705 342 AAVIRNLKIVQDRSKVIVMDA--DGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKS 404 (479)
Q Consensus 342 alGIs~Lk~~~kd~~IVVyC~--sG~-rS~~AA~~L~~~Gf~nV~vL~GG~~aW~aaGLPV~~~~p 404 (479)
.+|+ +.++.+|||++ .|+ .|.+++|.++..|+++|+.|.||+++|++.|+|+...+.
T Consensus 80 ~lGi------~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~~~ 139 (286)
T KOG1529|consen 80 RLGV------DNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSSKV 139 (286)
T ss_pred hcCC------CCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCccccccc
Confidence 8898 78899999999 777 688999999999999999999999999999999987663
No 56
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.05 E-value=2.8e-10 Score=122.51 Aligned_cols=81 Identities=19% Similarity=0.221 Sum_probs=65.8
Q ss_pred HHHHHHHhCCCCcEEEEcCChhhhhhcCCCC----ccccccccccccCcccccchhHhhhcCchhhhHHHHHHHHhhhcc
Q 011705 275 KSTLELLRGKENAVLIDVRHEDLRERDGIPD----LRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (479)
Q Consensus 275 ~El~elL~~~~~~vLIDVRs~~Ef~~gHIPG----A~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGIs~Lk~ 350 (479)
.+..+.+ .++.++||||++.||+.+|||| ++ |+|+.++......
T Consensus 398 ~~~~~~~--~~~~~lIDVR~~~E~~~~hI~g~~~~a~--------niP~~~l~~~~~~---------------------- 445 (482)
T PRK01269 398 VETVSEL--PPDDVIIDIRSPDEQEDKPLKLEGVEVK--------SLPFYKLSTQFGD---------------------- 445 (482)
T ss_pred hHHHHhc--CCCCEEEECCCHHHHhcCCCCCCCceEE--------ECCHHHHHHHHhh----------------------
Confidence 3344444 3578999999999999999999 87 8997665432221
Q ss_pred CCCCcEEEEEeCCCchHHHHHHHHHHccCCCEEEecc
Q 011705 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQG 387 (479)
Q Consensus 351 ~~kd~~IVVyC~sG~rS~~AA~~L~~~Gf~nV~vL~G 387 (479)
+++++++|+||++|.||..+|..|+..||+||+++.+
T Consensus 446 l~~~~~iivyC~~G~rS~~aa~~L~~~G~~nv~~y~~ 482 (482)
T PRK01269 446 LDQSKTYLLYCDRGVMSRLQALYLREQGFSNVKVYRP 482 (482)
T ss_pred cCCCCeEEEECCCCHHHHHHHHHHHHcCCccEEecCC
Confidence 2678899999999999999999999999999998753
No 57
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.01 E-value=3.4e-10 Score=114.09 Aligned_cols=99 Identities=19% Similarity=0.268 Sum_probs=79.7
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHHHHHHhhhcc
Q 011705 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (479)
Q Consensus 271 ~ISp~El~elL~~~~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGIs~Lk~ 350 (479)
-|+|+++.+++ .+++.++||+|...||+-||..||+ +.+...|.+...+. ++.. .
T Consensus 114 yl~p~~wn~~l-~D~~~vviDtRN~YE~~iG~F~gAv--------~p~~~tFrefP~~v-------~~~~---------~ 168 (308)
T COG1054 114 YLSPKDWNELL-SDPDVVVIDTRNDYEVAIGHFEGAV--------EPDIETFREFPAWV-------EENL---------D 168 (308)
T ss_pred ccCHHHHHHHh-cCCCeEEEEcCcceeEeeeeecCcc--------CCChhhhhhhHHHH-------HHHH---------H
Confidence 48999999999 4789999999999999999999998 55544444333321 1100 1
Q ss_pred CCCCcEEEEEeCCCchHHHHHHHHHHccCCCEEEecccHHHHHH
Q 011705 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (479)
Q Consensus 351 ~~kd~~IVVyC~sG~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~a 394 (479)
.-++++|+.||.+|.|...+..+|...||++||.|+||+-.+..
T Consensus 169 ~~~~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGIl~Y~e 212 (308)
T COG1054 169 LLKDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGILKYLE 212 (308)
T ss_pred hccCCcEEEEcCCceeehhhHHHHHHhcchhhhcccchHHHHhh
Confidence 13567999999999999999999999999999999999987765
No 58
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.66 E-value=6.2e-08 Score=97.40 Aligned_cols=94 Identities=21% Similarity=0.228 Sum_probs=79.6
Q ss_pred CCcEEEEcCChhhh-----------hhcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHHHHHHhhhccCCC
Q 011705 285 ENAVLIDVRHEDLR-----------ERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQD 353 (479)
Q Consensus 285 ~~~vLIDVRs~~Ef-----------~~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGIs~Lk~~~k 353 (479)
.++..+|.|...+| ..|||||++ |+|+.++...-..+. .++++..++...|+ ..
T Consensus 171 ~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~--------n~P~~~~~~~~g~~k-~~edl~~~f~~~~l------~~ 235 (286)
T KOG1529|consen 171 KNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAI--------NFPFDEVLDPDGFIK-PAEDLKHLFAQKGL------KL 235 (286)
T ss_pred ccceeeeccccccccccCCCCcccCcCccCCCcc--------cCChHHhcccccccC-CHHHHHHHHHhcCc------cc
Confidence 46899999998887 347999999 999987765544333 36778888888888 56
Q ss_pred CcEEEEEeCCCchHHHHHHHHHHccCCCEEEecccHHHHHH
Q 011705 354 RSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (479)
Q Consensus 354 d~~IVVyC~sG~rS~~AA~~L~~~Gf~nV~vL~GG~~aW~a 394 (479)
++|+|+-|..|..+...+-.|.+.| .++.+++|++..|.-
T Consensus 236 ~~p~~~sC~~Gisa~~i~~al~r~g-~~~~lYdGS~~Ew~~ 275 (286)
T KOG1529|consen 236 SKPVIVSCGTGISASIIALALERSG-PDAKLYDGSWTEWAL 275 (286)
T ss_pred CCCEEEeeccchhHHHHHHHHHhcC-CCcceecccHHHHhh
Confidence 8999999999999999999999999 799999999999975
No 59
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=98.44 E-value=3.3e-07 Score=93.87 Aligned_cols=104 Identities=22% Similarity=0.268 Sum_probs=74.3
Q ss_pred CccCHHHHHHHHhCC-----CCcEEEEcCChhhhhhcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHHHHH
Q 011705 270 GDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAV 344 (479)
Q Consensus 270 g~ISp~El~elL~~~-----~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alG 344 (479)
..||++.+..++++. ..++|||+|-|.||..|||+||+ |++..+...... .... +
T Consensus 156 k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgav--------nl~~~~~~~~~f---~~~~---------~ 215 (325)
T KOG3772|consen 156 KYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAV--------NLYSKELLQDFF---LLKD---------G 215 (325)
T ss_pred cccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccce--------ecccHhhhhhhh---cccc---------c
Confidence 579999999999642 13679999999999999999999 887644332211 0000 0
Q ss_pred HhhhccCCCCcEEEEEeCCCc-hHHHHHHHHHH------------ccCCCEEEecccHHHHHHcC
Q 011705 345 IRNLKIVQDRSKVIVMDADGT-RSKGIARSLRK------------LGVMRAFLVQGGFQSWVKEG 396 (479)
Q Consensus 345 Is~Lk~~~kd~~IVVyC~sG~-rS~~AA~~L~~------------~Gf~nV~vL~GG~~aW~aaG 396 (479)
. +...+..-+|+||.... |...+|+.|+. +-|.++|+|+||+..|...-
T Consensus 216 ~---~~~~~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~~ 277 (325)
T KOG3772|consen 216 V---PSGSKRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSNY 277 (325)
T ss_pred c---ccccCceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHhc
Confidence 0 00123456889998655 89999999983 45678999999999997643
No 60
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=97.06 E-value=0.00098 Score=68.56 Aligned_cols=98 Identities=17% Similarity=0.280 Sum_probs=69.7
Q ss_pred CccCHHHHHHHHhCC-----CCcEEEEcCChhhhhhcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHHHHH
Q 011705 270 GDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAV 344 (479)
Q Consensus 270 g~ISp~El~elL~~~-----~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alG 344 (479)
.+|+++-+..++++. -+++|||.|-+.||..|||-.|+ ||.-.+ .+.-.+ +.
T Consensus 242 ~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaV--------Ni~s~~---~l~~~F-----~h------- 298 (427)
T COG5105 242 QRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAV--------NISSTK---KLGLLF-----RH------- 298 (427)
T ss_pred hhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeee--------ecchHH---HHHHHH-----Hh-------
Confidence 689999999998532 14689999999999999999998 764311 111110 00
Q ss_pred HhhhccCCCCcEEEEEeCCC-chHHHHHHHHHHc------------cCCCEEEecccHHHHHH
Q 011705 345 IRNLKIVQDRSKVIVMDADG-TRSKGIARSLRKL------------GVMRAFLVQGGFQSWVK 394 (479)
Q Consensus 345 Is~Lk~~~kd~~IVVyC~sG-~rS~~AA~~L~~~------------Gf~nV~vL~GG~~aW~a 394 (479)
|....-+-+|+.|... .|+...|.-|+.. =|.+||+|+||+...-.
T Consensus 299 ----kplThp~aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~ 357 (427)
T COG5105 299 ----KPLTHPRALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYS 357 (427)
T ss_pred ----ccccCceeEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhh
Confidence 1112345688899864 4999999888643 36789999999998765
No 61
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=95.31 E-value=0.0027 Score=53.06 Aligned_cols=46 Identities=20% Similarity=0.197 Sum_probs=35.0
Q ss_pred ccCCCCCCCchHHHhhhhhHhhhhhcccccchHHHHHHHHHHHHHhcCC
Q 011705 189 GTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGF 237 (479)
Q Consensus 189 G~~~~~l~p~~~~~~~~~e~~~~~v~~p~g~~~~qv~~~le~l~~~lg~ 237 (479)
+||||||+|+......+|++.+ |++|+-+.++ ..++.|.++-++|+
T Consensus 3 ~pC~rCl~p~~~~~~~~C~~~G--Vlg~~~giig-slqA~eaik~l~g~ 48 (84)
T PF05237_consen 3 TPCYRCLFPEPPESAPTCAEAG--VLGPVVGIIG-SLQANEAIKLLLGI 48 (84)
T ss_dssp ---HHHHHTTSS--TTSSSTS---B-HHHHHHHH-HHHHHHHHHHHCT-
T ss_pred CceehhcCCCCCccCCCccccc--cccchHHHHH-HHHHHHHHHHHHhc
Confidence 6899999999977888999999 9999999999 78888999988886
No 62
>COG2603 Predicted ATPase [General function prediction only]
Probab=94.57 E-value=0.047 Score=55.96 Aligned_cols=100 Identities=22% Similarity=0.217 Sum_probs=56.7
Q ss_pred CCcEEEEcCChhhhhhcCCCCccccccccccccCcccccc--hhHhhhcC-chh---------hhHHHHHHHHhhhccCC
Q 011705 285 ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGG--SVKKLLRG-GRE---------LDDTLTAAVIRNLKIVQ 352 (479)
Q Consensus 285 ~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~--~l~~ll~~-~~~---------L~~ll~alGIs~Lk~~~ 352 (479)
.+..+||||.|-||..||-|++. |.|.-.=.+ .+....+- ... +...+..--...-++..
T Consensus 14 ~~~~lid~rap~ef~~g~~~ia~--------nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f~ 85 (334)
T COG2603 14 ADTPLIDVRAPIEFENGAMPIAI--------NLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAFQ 85 (334)
T ss_pred cCCceeeccchHHHhcccchhhh--------ccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 46789999999999999999987 555310000 01000000 000 00000000000011223
Q ss_pred CCcEEEEEeCCCc-hHHHHHHHH-HHccCCCEEEecccHHHHH
Q 011705 353 DRSKVIVMDADGT-RSKGIARSL-RKLGVMRAFLVQGGFQSWV 393 (479)
Q Consensus 353 kd~~IVVyC~sG~-rS~~AA~~L-~~~Gf~nV~vL~GG~~aW~ 393 (479)
.+.|+-++|..|+ ||...+.+| ...|++ .--+.||+.+.+
T Consensus 86 e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKalr 127 (334)
T COG2603 86 EENPVGILCARGGLRSKIVQKWLGYAAGID-YPRVIGGEKALR 127 (334)
T ss_pred HhCCcceeeccccchhHHHHHHHHHHHHhh-hhhhhchHHHHH
Confidence 4567777797666 999999999 778874 445679987654
No 63
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=93.59 E-value=0.13 Score=45.47 Aligned_cols=87 Identities=17% Similarity=0.258 Sum_probs=39.9
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCCc------cccccccccccCcccccchhHhhhcCchhhhHHHHHH
Q 011705 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDL------RRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAA 343 (479)
Q Consensus 270 g~ISp~El~elL~~~~~~vLIDVRs~~Ef~~gHIPGA------~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~al 343 (479)
+.++++++.++.+ ..=-.||+.|+..|- .+-|.. ....-..|.++|...- . + +++.++... ++
T Consensus 13 ~Q~~~~d~~~la~-~GfktVInlRpd~E~--~~qp~~~~~~~~a~~~Gl~y~~iPv~~~-~-~-----~~~~v~~f~-~~ 81 (110)
T PF04273_consen 13 GQPSPEDLAQLAA-QGFKTVINLRPDGEE--PGQPSSAEEAAAAEALGLQYVHIPVDGG-A-I-----TEEDVEAFA-DA 81 (110)
T ss_dssp CS--HHHHHHHHH-CT--EEEE-S-TTST--TT-T-HHCHHHHHHHCT-EEEE----TT-T--------HHHHHHHH-HH
T ss_pred CCCCHHHHHHHHH-CCCcEEEECCCCCCC--CCCCCHHHHHHHHHHcCCeEEEeecCCC-C-C-----CHHHHHHHH-HH
Confidence 6899999998875 445689999987653 223321 1122234556775321 1 1 011122211 11
Q ss_pred HHhhhccCCCCcEEEEEeCCCchHHHHHHH
Q 011705 344 VIRNLKIVQDRSKVIVMDADGTRSKGIARS 373 (479)
Q Consensus 344 GIs~Lk~~~kd~~IVVyC~sG~rS~~AA~~ 373 (479)
+. ...+||++||++|.||...|..
T Consensus 82 ----l~--~~~~Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 82 ----LE--SLPKPVLAHCRSGTRASALWAL 105 (110)
T ss_dssp ----HH--TTTTSEEEE-SCSHHHHHHHHH
T ss_pred ----HH--hCCCCEEEECCCChhHHHHHHH
Confidence 11 2356999999999999766544
No 64
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=93.29 E-value=0.23 Score=44.87 Aligned_cols=94 Identities=18% Similarity=0.186 Sum_probs=50.6
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCCcc------ccccccccccCcccccchhHhhhcCchhhhHHHHHH
Q 011705 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLR------RGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAA 343 (479)
Q Consensus 270 g~ISp~El~elL~~~~~~vLIDVRs~~Ef~~gHIPGA~------~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~al 343 (479)
+.++++++..+.+ ..=-.|||.|+..|... -|... ......+.++|+.. ..+ ++..+......+
T Consensus 13 ~qlt~~d~~~L~~-~GiktVIdlR~~~E~~~--~p~~~~~~~~a~~~gl~y~~iPv~~--~~~-----~~~~v~~f~~~~ 82 (135)
T TIGR01244 13 PQLTKADAAQAAQ-LGFKTVINNRPDREEES--QPDFAQIKAAAEAAGVTYHHQPVTA--GDI-----TPDDVETFRAAI 82 (135)
T ss_pred CCCCHHHHHHHHH-CCCcEEEECCCCCCCCC--CCCHHHHHHHHHHCCCeEEEeecCC--CCC-----CHHHHHHHHHHH
Confidence 6789999987653 34468999999877432 22210 00122344566421 111 111121111111
Q ss_pred HHhhhccCCCCcEEEEEeCCCchHHHHHHH-HHHccCC
Q 011705 344 VIRNLKIVQDRSKVIVMDADGTRSKGIARS-LRKLGVM 380 (479)
Q Consensus 344 GIs~Lk~~~kd~~IVVyC~sG~rS~~AA~~-L~~~Gf~ 380 (479)
. ..+.||+++|++|.|+..++.. +...|..
T Consensus 83 -----~--~~~~pvL~HC~sG~Rt~~l~al~~~~~g~~ 113 (135)
T TIGR01244 83 -----G--AAEGPVLAYCRSGTRSSLLWGFRQAAEGVP 113 (135)
T ss_pred -----H--hCCCCEEEEcCCChHHHHHHHHHHHHcCCC
Confidence 1 2457999999999998776644 3444543
No 65
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=91.56 E-value=0.055 Score=56.44 Aligned_cols=115 Identities=17% Similarity=0.118 Sum_probs=70.9
Q ss_pred ccCCCCCCCchHHHhhhhhHhhhhhcccccchHHHHHHHHHHHHHhcCCCC--CCCcchhhHHhhhh-------------
Q 011705 189 GTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTS------------- 253 (479)
Q Consensus 189 G~~~~~l~p~~~~~~~~~e~~~~~v~~p~g~~~~qv~~~le~l~~~lg~~~--~~PvL~~~v~~g~~------------- 253 (479)
+||++|++|++++.-.+|.+.+ +++|+.+.+. ..++.|.++-+.|... ...++.+-.+-...
T Consensus 164 ~pC~~Cl~~~~~~~~~~c~~~g--v~~p~~~~i~-~~~a~ealk~l~g~~~~l~~~l~~~d~~~~~~~~~~~~~~~~~~C 240 (339)
T PRK07688 164 TPCLRCLLQSIPLGGATCDTAG--IISPAVQIVA-SYQVTEALKLLVGDYEALRDGLVSFDVWKNEYSCMNVQKLKKDNC 240 (339)
T ss_pred CCCeEeecCCCCCCCCCCccCC--cccHHHHHHH-HHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEEEEEecCCCCCCC
Confidence 5899999998776556788888 9999988777 7777788887776521 11111110000000
Q ss_pred ---h--h--HHHHHH------HHHhc-------CCCCccCHHHHHHHHhC-----CCCcEEEEcCChhhhhhcCCCCcc
Q 011705 254 ---A--T--LWIFYW------WWTYG-------GYSGDLSPKSTLELLRG-----KENAVLIDVRHEDLRERDGIPDLR 307 (479)
Q Consensus 254 ---~--a--l~l~~~------l~~~~-------~~~g~ISp~El~elL~~-----~~~~vLIDVRs~~Ef~~gHIPGA~ 307 (479)
+ . -++.+- .+..+ +....++++++.++++. +.+..+||||++. |+..++|+-+
T Consensus 241 p~Cg~~~~~~~~~~~~~~~~~~lcg~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~gr 318 (339)
T PRK07688 241 PSCGEKALYPYLNYENTTKTAVLCGRNTVQIRPPHKEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKDGR 318 (339)
T ss_pred CCCCCCCCccccchhhccchhhhcCccccccccCCcCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcCCC
Confidence 0 0 000000 01111 11136899999988832 3578999999988 9999999865
No 66
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=87.92 E-value=0.18 Score=55.80 Aligned_cols=96 Identities=18% Similarity=0.224 Sum_probs=59.9
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHHHHHHhhhc
Q 011705 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (479)
Q Consensus 270 g~ISp~El~elL~~~~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGIs~Lk 349 (479)
++|+++++..+ +...++|.|...||.++|+++++ |+|...-.+.++++.. ++ ++.+
T Consensus 622 prmsAedl~~~----~~l~v~d~r~~~ef~r~~~s~s~--------nip~~~~ea~l~~~~~----l~------~~~~-- 677 (725)
T KOG1093|consen 622 PRISAEDLIWL----KMLYVLDTRQESEFQREHFSDSI--------NIPFNNHEADLDWLRF----LP------GIVC-- 677 (725)
T ss_pred ccccHHHHHHH----HHHHHHhHHHHHHHHHhhccccc--------cCCccchHHHHHHhhc----ch------HhHH--
Confidence 35666665544 35679999999999999999999 8887533333333211 11 1111
Q ss_pred cCCCCcEEEEEeCCCchHHHHHHHHHHccCCCEEEecccHHH
Q 011705 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQS 391 (479)
Q Consensus 350 ~~~kd~~IVVyC~sG~rS~~AA~~L~~~Gf~nV~vL~GG~~a 391 (479)
.....++++.....-++.....+..+-+.+..++.+|+++
T Consensus 678 --~~~~~~v~~~~~~K~~~e~~~~~~~mk~p~~cil~~~~~~ 717 (725)
T KOG1093|consen 678 --SEGKKCVVVGKNDKHAAERLTELYVMKVPRICILHDGFNN 717 (725)
T ss_pred --hhCCeEEEeccchHHHHHHhhHHHHhcccHHHHHHHHHhh
Confidence 2445566665554455555555555557778888888873
No 67
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=83.99 E-value=0.9 Score=46.41 Aligned_cols=100 Identities=22% Similarity=0.251 Sum_probs=55.1
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCCccccccccccccCcccccc--------hhHhhhcCchhhhHHHHHH
Q 011705 272 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGG--------SVKKLLRGGRELDDTLTAA 343 (479)
Q Consensus 272 ISp~El~elL~~~~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~--------~l~~ll~~~~~L~~ll~al 343 (479)
++++++.+.+. .++.+++|.|+ +..||.+|. ++.++.+.. .++.++|+......
T Consensus 6 ~s~~wlnr~l~-~~nllllDCRs----es~~i~~A~--------~valPalmlrrl~~g~l~~ra~~p~~~d~~~----- 67 (343)
T KOG1717|consen 6 KSVAWLNRQLE-LGNLLLLDCRS----ESSHIESAI--------NVALPALMLRRLTGGNLPVRALFPRSCDDKR----- 67 (343)
T ss_pred HHHHHHHhhcc-cCceEEEecCC----ccchhhhhh--------hhcchHHHHHHHhCCCCcceeccCCcccccc-----
Confidence 56777777773 56799999999 456888775 333322210 11122222221110
Q ss_pred HHhhhccCCCCcEEEEEeCCCc------hHH----HHHHHHHHccCCCEEEecccHHHHHH
Q 011705 344 VIRNLKIVQDRSKVIVMDADGT------RSK----GIARSLRKLGVMRAFLVQGGFQSWVK 394 (479)
Q Consensus 344 GIs~Lk~~~kd~~IVVyC~sG~------rS~----~AA~~L~~~Gf~nV~vL~GG~~aW~a 394 (479)
.+.-=+..++|.|+.... .+. ..-+.++..|+ .++.|.|||..++.
T Consensus 68 ----~~~~c~~v~vilyD~~~~e~e~~~~~~s~Lg~ll~kl~~~g~-~a~yL~ggF~~fq~ 123 (343)
T KOG1717|consen 68 ----FPARCGTVTVILYDESSAEWEEETGAESVLGLLLKKLKDEGC-SARYLSGGFSKFQA 123 (343)
T ss_pred ----ccccCCcceeeecccccccccccchhhhHHHHHHHHHHhcCc-chhhhhcccchhhh
Confidence 000012357888887621 111 12244677888 68999999987654
No 68
>PRK08223 hypothetical protein; Validated
Probab=81.57 E-value=0.87 Score=46.78 Aligned_cols=52 Identities=17% Similarity=-0.003 Sum_probs=35.6
Q ss_pred eEEEeeccCCCCCCCc---hHH----------HhhhhhHhhhhhc----------------ccccchHHHHHHHHHHHHH
Q 011705 183 FVVYYYGTTKESLPPE---IRD----------ALNLYEDRAVKLW----------------RPVGSALQQVSVAIEGLER 233 (479)
Q Consensus 183 ~~~~~~G~~~~~l~p~---~~~----------~~~~~e~~~~~v~----------------~p~g~~~~qv~~~le~l~~ 233 (479)
++++..||||+|++|+ ..+ .+-+|.+.+ ++ +|+++.++ ..++.|.++-
T Consensus 160 ~v~~p~~p~~~~~f~~~~~~~~~~~~~~~~~~~~p~c~~~g--vl~~~~~~~~~~~~~p~~g~~~g~~g-~~~a~E~ik~ 236 (287)
T PRK08223 160 LVFDPGGMSFDDYFDLSDGMNEVEKAVRFLAGLAPSMLHRG--YLADPSRVDLENRTGPSTGLACQLCA-GVVATEVLKI 236 (287)
T ss_pred EEEcCCCCchhhhcCCCCCCCchhhhcccCCcCCCccccCC--ccccccccccccccCCCccchHHHHH-HHHHHHHHHH
Confidence 4444468999999987 433 556888888 66 66666666 5566777666
Q ss_pred hcCC
Q 011705 234 SLGF 237 (479)
Q Consensus 234 ~lg~ 237 (479)
++|.
T Consensus 237 l~g~ 240 (287)
T PRK08223 237 LLGR 240 (287)
T ss_pred HhCC
Confidence 6664
No 69
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=80.53 E-value=0.29 Score=50.68 Aligned_cols=53 Identities=13% Similarity=0.060 Sum_probs=41.0
Q ss_pred CCCccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCCccccccccccccCcccccchhHhhh
Q 011705 268 YSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLL 330 (479)
Q Consensus 268 ~~g~ISp~El~elL~~~~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~l~~ll 330 (479)
|..--+++++.+.+. .....+|+|.+..|..+||||++ ++|...+....+++.
T Consensus 12 f~~i~~~~~~~~~l~--~~~~~~d~rg~i~~a~egIngti--------s~~~~~~~~~~~~l~ 64 (314)
T PRK00142 12 YTPIEDPEAFRDEHL--ALCKSLGLKGRILVAEEGINGTV--------SGTIEQTEAYMAWLK 64 (314)
T ss_pred cccCCCHHHHHHHHH--HHHHHcCCeeEEEEcCCCceEEE--------EecHHHHHHHHHHHh
Confidence 444456788888774 35679999999999999999999 888766666666553
No 70
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=79.20 E-value=5.9 Score=34.62 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=18.8
Q ss_pred CCCcEEEEEeCCCc-hHHHH--HHHHHHccC
Q 011705 352 QDRSKVIVMDADGT-RSKGI--ARSLRKLGV 379 (479)
Q Consensus 352 ~kd~~IVVyC~sG~-rS~~A--A~~L~~~Gf 379 (479)
..+.+|+|+|..|. ||..+ +..+...|+
T Consensus 79 ~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~ 109 (139)
T cd00127 79 EKGGKVLVHCLAGVSRSATLVIAYLMKTLGL 109 (139)
T ss_pred hcCCcEEEECCCCCchhHHHHHHHHHHHcCC
Confidence 34679999999997 77643 344454444
No 71
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=77.81 E-value=10 Score=34.96 Aligned_cols=31 Identities=26% Similarity=0.280 Sum_probs=19.3
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhhhhc
Q 011705 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERD 301 (479)
Q Consensus 270 g~ISp~El~elL~~~~~~vLIDVRs~~Ef~~g 301 (479)
..+|+++...+. +-.=-.|||.|++.|....
T Consensus 28 ~~lt~~d~~~L~-~lgI~tIiDLRs~~E~~~~ 58 (164)
T PF13350_consen 28 SNLTEADLERLR-ELGIRTIIDLRSPTERERA 58 (164)
T ss_dssp TT--HHHHHHHH-HTT--EEEE-S-HHHHHHH
T ss_pred CcCCHHHHHHHH-hCCCCEEEECCCccccccC
Confidence 578999887776 3344689999999998775
No 72
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=71.28 E-value=4.2 Score=36.86 Aligned_cols=76 Identities=12% Similarity=0.080 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHH----hhhhcccCcce--------EEEee------------ccCCCCCCCchHHHhhhhhHhhhhhccc
Q 011705 161 AAVDVLRNTIVA----LEESMTNGASF--------VVYYY------------GTTKESLPPEIRDALNLYEDRAVKLWRP 216 (479)
Q Consensus 161 ~~~d~l~~~~~~----~~~~~~~~~~~--------~~~~~------------G~~~~~l~p~~~~~~~~~e~~~~~v~~p 216 (479)
|+.++|++.+.. -+-.|.|.|++ ..|.= ||++..++-++....+ .......+
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~----~~~~~~~~ 76 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLD----EAGFEESM 76 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhC----cCCCCCCC
Confidence 456788888752 23457888875 44543 8999888776654331 11112222
Q ss_pred ccchHHHHHHHHHHHHHhcCCCCCCCcch
Q 011705 217 VGSALQQVSVAIEGLERSLGFDPNDPIVP 245 (479)
Q Consensus 217 ~g~~~~qv~~~le~l~~~lg~~~~~PvL~ 245 (479)
... .+.++.+...+|+++++||++
T Consensus 77 ~p~-----~~~~~~~~~~~GI~~~~~vVv 100 (138)
T cd01445 77 EPS-----EAEFAAMFEAKGIDLDKHLIA 100 (138)
T ss_pred CCC-----HHHHHHHHHHcCCCCCCeEEE
Confidence 222 123445556689999999974
No 73
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=66.19 E-value=4 Score=37.30 Aligned_cols=10 Identities=40% Similarity=0.494 Sum_probs=3.7
Q ss_pred HHHHHHhhhh
Q 011705 167 RNTIVALEES 176 (479)
Q Consensus 167 ~~~~~~~~~~ 176 (479)
+..+..+++.
T Consensus 110 ~~~~~~~~~~ 119 (202)
T PF01442_consen 110 EEEVDELEES 119 (202)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 74
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=65.61 E-value=12 Score=38.73 Aligned_cols=33 Identities=12% Similarity=0.116 Sum_probs=27.4
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCChhhhhh---cCCC
Q 011705 271 DLSPKSTLELLRGKENAVLIDVRHEDLRER---DGIP 304 (479)
Q Consensus 271 ~ISp~El~elL~~~~~~vLIDVRs~~Ef~~---gHIP 304 (479)
.+...++.+.+. ..+..+||+|+..+|.. ||||
T Consensus 137 g~gKt~Ll~~L~-~~~~~VvDlr~~a~hrGs~fG~~~ 172 (311)
T TIGR03167 137 GSGKTELLHALA-NAGAQVLDLEGLANHRGSSFGALG 172 (311)
T ss_pred CcCHHHHHHHHh-cCCCeEEECCchHHhcCcccCCCC
Confidence 366778888885 45789999999999998 8888
No 75
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.75 E-value=21 Score=32.65 Aligned_cols=85 Identities=20% Similarity=0.298 Sum_probs=48.5
Q ss_pred CCccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCCc------cccccccccccCcc--cccc-hhHhhhcCchhhhHH
Q 011705 269 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDL------RRGARFRYASVYLP--EVGG-SVKKLLRGGRELDDT 339 (479)
Q Consensus 269 ~g~ISp~El~elL~~~~~~vLIDVRs~~Ef~~gHIPGA------~~av~~~~~nIPl~--el~~-~l~~ll~~~~~L~~l 339 (479)
.+.++++++.++.. ..-..||--||..|= -+=|+. ....-..|.+||.. .+.. .+.. +++.
T Consensus 13 sgQi~~~D~~~iaa-~GFksiI~nRPDgEe--~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~-------f~~A 82 (130)
T COG3453 13 SGQISPADIASIAA-LGFKSIICNRPDGEE--PGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVEA-------FQRA 82 (130)
T ss_pred cCCCCHHHHHHHHH-hccceecccCCCCCC--CCCCChHHHHHHHHhcCCceEEeecCCCCCCHHHHHH-------HHHH
Confidence 47899999998864 344578999984432 223332 11112234456652 2221 1111 1222
Q ss_pred HHHHHHhhhccCCCCcEEEEEeCCCchHHHHHHH
Q 011705 340 LTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARS 373 (479)
Q Consensus 340 l~alGIs~Lk~~~kd~~IVVyC~sG~rS~~AA~~ 373 (479)
+. ..+.||+.||++|.||...+..
T Consensus 83 l~----------eaegPVlayCrsGtRs~~ly~~ 106 (130)
T COG3453 83 LD----------EAEGPVLAYCRSGTRSLNLYGL 106 (130)
T ss_pred HH----------HhCCCEEeeecCCchHHHHHHH
Confidence 21 3567999999999999877654
No 76
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=61.23 E-value=7.1 Score=38.62 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=43.5
Q ss_pred cCcceEEEee--ccCCCCCCCchHH--Hhh-hhhHhhhhhcccccchHHHHHHHHHHHHHhcCC
Q 011705 179 NGASFVVYYY--GTTKESLPPEIRD--ALN-LYEDRAVKLWRPVGSALQQVSVAIEGLERSLGF 237 (479)
Q Consensus 179 ~~~~~~~~~~--G~~~~~l~p~~~~--~~~-~~e~~~~~v~~p~g~~~~qv~~~le~l~~~lg~ 237 (479)
.|.-+++... ++|++|++|+..+ .+. .|++.+ +++|..+... ..++++.++-..|.
T Consensus 157 ~g~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~c~~~g--v~~~~~~~~~-~~~~~~~~k~~~g~ 217 (254)
T COG0476 157 EGQVTVIIPGDKTPCYRCLFPEKPPPGLVPTSCDEAG--VLGPLVGVVG-SLQALEAIKLLTGI 217 (254)
T ss_pred eEEEEEEecCCCCCcccccCCCCCCccccccccccCC--ccccccchhh-hHHHHHHHHHhcCC
Confidence 3444455555 6899999999986 233 489888 9999999999 88888888888886
No 77
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=58.84 E-value=32 Score=37.86 Aligned_cols=91 Identities=14% Similarity=0.141 Sum_probs=48.8
Q ss_pred CcEEEEcCChhhhhhcCCCCccccccccccccCcccccchhHhhhcCchhhhHHHHH----H--HHhhhccCCCCcEEEE
Q 011705 286 NAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTA----A--VIRNLKIVQDRSKVIV 359 (479)
Q Consensus 286 ~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~a----l--GIs~Lk~~~kd~~IVV 359 (479)
+..+||.|+.++|..||.-.|- |..- .-++.+|..++..+.. . -|+.- ....+.++.+
T Consensus 326 rFFiVDcRpaeqynaGHlstaF--------hlDc-------~lmlqeP~~Fa~av~sLl~aqrqtie~~-s~aggeHlcf 389 (669)
T KOG3636|consen 326 RFFIVDCRPAEQYNAGHLSTAF--------HLDC-------VLMLQEPEKFAIAVNSLLCAQRQTIERD-SNAGGEHLCF 389 (669)
T ss_pred EEEEEeccchhhcccccchhhh--------cccH-------HHHhcCHHHHHHHHHHHHHHHHHhhhcc-ccCCcceEEE
Confidence 4679999999999999998764 3211 1122333333322211 1 22100 0122355655
Q ss_pred EeCCCc-----hHHHHHHHHHHccCCCEEEecccHHHHH
Q 011705 360 MDADGT-----RSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (479)
Q Consensus 360 yC~sG~-----rS~~AA~~L~~~Gf~nV~vL~GG~~aW~ 393 (479)
+..+.. .-+.+|..|.+. -..|..+.||+....
T Consensus 390 mGsGr~EED~YmnMviA~FlQKn-k~yVS~~~GGy~~lh 427 (669)
T KOG3636|consen 390 MGSGRDEEDNYMNMVIAMFLQKN-KLYVSFVQGGYKKLH 427 (669)
T ss_pred eccCcchHHHHHHHHHHHHHhcC-ceEEEEecchHHHHH
Confidence 543221 234556666554 346889999997654
No 78
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=56.46 E-value=9.3 Score=33.93 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=30.0
Q ss_pred EEEEeCCCc-hHHHHHHHHHHc----cCCCEEEecccHHHH
Q 011705 357 VIVMDADGT-RSKGIARSLRKL----GVMRAFLVQGGFQSW 392 (479)
Q Consensus 357 IVVyC~sG~-rS~~AA~~L~~~----Gf~nV~vL~GG~~aW 392 (479)
|+++|.+.. ||..|...++.+ +-.++.+...|+.+|
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence 688998765 999888888877 777899999998876
No 79
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=55.72 E-value=35 Score=32.91 Aligned_cols=78 Identities=27% Similarity=0.224 Sum_probs=49.9
Q ss_pred EEEEeCCCchHHHHHHHHHHccCCCEEEe---cccHHHHHHc-------CCCcccccccchhhhchhhHHHHHhhhcCCc
Q 011705 357 VIVMDADGTRSKGIARSLRKLGVMRAFLV---QGGFQSWVKE-------GLRIKELKSETALTILNEDAEAILEDINSSP 426 (479)
Q Consensus 357 IVVyC~sG~rS~~AA~~L~~~Gf~nV~vL---~GG~~aW~aa-------GLPV~~~~p~~~l~~~~e~~e~i~~di~~~p 426 (479)
+.+...+|..|..+|+.|.++||. +..+ -|=.+.|+-+ |+|-. .-..+-++++..++-+++|..|++
T Consensus 3 v~vLfSGGKDSSLaA~iL~klgye-v~LVTvnFGv~d~~k~A~~tA~~lgF~h~--vl~Ldr~ile~A~em~iedg~P~~ 79 (198)
T COG2117 3 VYVLFSGGKDSSLAALILDKLGYE-VELVTVNFGVLDSWKYARETAAILGFPHE--VLQLDREILEDAVEMIIEDGYPRN 79 (198)
T ss_pred eEEEecCCCchhHHHHHHHHhCCC-cEEEEEEeccccchhhHHHHHHHhCCCcc--eeccCHHHHHHHHHHHHhcCCCch
Confidence 556667788999999999999995 4432 2555777532 33322 112344567778888899998887
Q ss_pred hhhHHHHHHHH
Q 011705 427 VQFLGFGVGCF 437 (479)
Q Consensus 427 ~~~~~~~~g~~ 437 (479)
-.-.-+-.+++
T Consensus 80 aIq~iH~~alE 90 (198)
T COG2117 80 AIQYIHEMALE 90 (198)
T ss_pred HHHHHHHHHHH
Confidence 54444444443
No 80
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=54.69 E-value=8.7 Score=38.23 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=32.5
Q ss_pred ccCCCCCCCchHHHhhhhhHhhhhhcccccchHHHHHHHHHHHHHhcCC
Q 011705 189 GTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGF 237 (479)
Q Consensus 189 G~~~~~l~p~~~~~~~~~e~~~~~v~~p~g~~~~qv~~~le~l~~~lg~ 237 (479)
++|++|++|+..+.-..|.+.+ +++|.-+.++ ..++.|.++-++|+
T Consensus 171 ~~c~~c~~~~~~~~~~~~~~~g--v~~~~~~~~~-~~~a~e~ik~l~g~ 216 (245)
T PRK05690 171 EPCYRCLSRLFGENALTCVEAG--VMAPLVGVIG-SLQAMEAIKLLTGY 216 (245)
T ss_pred CceeeeccCCCCCCCCCcccCC--ccchHHHHHH-HHHHHHHHHHHhCC
Confidence 3799999987654323677777 8888877777 55667777766664
No 81
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=52.09 E-value=41 Score=28.38 Aligned_cols=62 Identities=6% Similarity=0.170 Sum_probs=34.9
Q ss_pred hhhhhhhhhhHHhhhhhhhhhhhhhhhhHHHHHhHHhhhhhHhhhhhhhhHhHHHHHhhhhh
Q 011705 70 SISNIKSSFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFS 131 (479)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (479)
.|.++...++++...+.+.....+.+..+-+++.++.++..+..+...+.+-+..+...+-.
T Consensus 6 ~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 67 (94)
T PF05957_consen 6 ELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTED 67 (94)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666656655555555555444444444443333
No 82
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=51.97 E-value=6.9 Score=40.93 Aligned_cols=46 Identities=9% Similarity=0.008 Sum_probs=30.3
Q ss_pred eccCCCCCCCchHHHhhhhhHhhhhhcccccchHHHHHHHHHHHHHhcC
Q 011705 188 YGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLG 236 (479)
Q Consensus 188 ~G~~~~~l~p~~~~~~~~~e~~~~~v~~p~g~~~~qv~~~le~l~~~lg 236 (479)
-+||++|+.|++...-.+|+..+ +++|+.+.+. ..++.|.++-++|
T Consensus 163 ~tpC~~Cl~~~~p~~~~~c~~~G--vl~p~v~~ia-slqa~EalK~L~g 208 (338)
T PRK12475 163 KTPCLRCLMEHVPVGGATCDTAG--IIQPAVQIVV-AYQVTEALKILVE 208 (338)
T ss_pred CCCCHHHhcCCCCCCCCCCccCC--cCchHHHHHH-HHHHHHHHHHHhC
Confidence 35899999987644334577666 7777776555 5555566664445
No 83
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=50.00 E-value=78 Score=31.41 Aligned_cols=93 Identities=16% Similarity=0.179 Sum_probs=47.5
Q ss_pred HHHHHHHhCCCCcEEEEcCChhhhhhcCCCCccccccccccccCcc-cccchhHhhhcCchhhhHHHHHHHHhhhccCCC
Q 011705 275 KSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLP-EVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQD 353 (479)
Q Consensus 275 ~El~elL~~~~~~vLIDVRs~~Ef~~gHIPGA~~av~~~~~nIPl~-el~~~l~~ll~~~~~L~~ll~alGIs~Lk~~~k 353 (479)
.++.+.+ ++-++||+-.|.++ .+.-+... ..|.+ .-.+.+.+.+|+.+ +-+.|....-..|...++
T Consensus 78 ~~l~~~~---~~KIvID~tnp~~~-~~~~~~~~--------~~~~~~saae~va~~lp~ak-VVkAFn~i~a~~l~~~~~ 144 (211)
T COG2085 78 AELRDAL---GGKIVIDATNPIEV-NGEPGDLY--------LVPSEGSAAEIVAKLLPGAK-VVKAFNTIPAAVLADLAK 144 (211)
T ss_pred HHHHHHh---CCeEEEecCCCccc-cCCccccc--------cCCCCCcHHHHHHHHCCCcc-hhhhhcccCHHHhccCCC
Confidence 3444444 36799999988655 33222111 11211 11122333444332 222233333333332222
Q ss_pred --CcEEEEEeCCCchHHHHH-HHHHHccCC
Q 011705 354 --RSKVIVMDADGTRSKGIA-RSLRKLGVM 380 (479)
Q Consensus 354 --d~~IVVyC~sG~rS~~AA-~~L~~~Gf~ 380 (479)
.+..++||.+...+...+ ...++.||.
T Consensus 145 ~~~~~~v~vagDD~~Ak~~v~~L~~~iG~~ 174 (211)
T COG2085 145 PGGRRDVLVAGDDAEAKAVVAELAEDIGFR 174 (211)
T ss_pred cCCceeEEEecCcHHHHHHHHHHHHhcCcc
Confidence 588999999998887655 455788985
No 84
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=49.26 E-value=23 Score=32.57 Aligned_cols=41 Identities=24% Similarity=0.368 Sum_probs=23.4
Q ss_pred CCCcEEEEEe-C----CCchHHHHHHHHHHccCCCEEEecccHHHH
Q 011705 352 QDRSKVIVMD-A----DGTRSKGIARSLRKLGVMRAFLVQGGFQSW 392 (479)
Q Consensus 352 ~kd~~IVVyC-~----sG~rS~~AA~~L~~~Gf~nV~vL~GG~~aW 392 (479)
+++..+++++ . .|..-..++..|+.+|..++.+|+||-...
T Consensus 98 ~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs~ 143 (170)
T PF09992_consen 98 TADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSST 143 (170)
T ss_dssp -TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG--
T ss_pred eCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcceE
Confidence 3444555554 4 256677889999999999999999997644
No 85
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=48.54 E-value=11 Score=36.15 Aligned_cols=40 Identities=25% Similarity=0.281 Sum_probs=26.2
Q ss_pred ccCCCCCCCchHHHhhhhhHhhhhhcccccchHHHHHHHHHHH
Q 011705 189 GTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGL 231 (479)
Q Consensus 189 G~~~~~l~p~~~~~~~~~e~~~~~v~~p~g~~~~qv~~~le~l 231 (479)
++|++|++++..+....|...+ +++|..+... ..++.|.+
T Consensus 160 ~~c~~c~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~a~e~~ 199 (202)
T TIGR02356 160 GPCLRCLFPDIADTGPSCATAG--VIGPVVGVIG-SLQALEAL 199 (202)
T ss_pred CCChhhcCCCCcccCCCCccCC--ccchHHHHHH-HHHHHHHH
Confidence 4899999998555555666555 7777766666 44444443
No 86
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=48.37 E-value=9.3 Score=40.27 Aligned_cols=46 Identities=15% Similarity=0.137 Sum_probs=33.6
Q ss_pred ccCCCCCCCchHH--HhhhhhHhhhhhcccccchHHHHHHHHHHHHHhcCC
Q 011705 189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGF 237 (479)
Q Consensus 189 G~~~~~l~p~~~~--~~~~~e~~~~~v~~p~g~~~~qv~~~le~l~~~lg~ 237 (479)
++|++|++|+.++ ...+|.+.+ +++|..+.+. ..++.|.++-++|+
T Consensus 277 ~~c~~c~~~~~~~~~~~~~~~~~g--v~g~~~~~~~-~~~a~e~~k~l~g~ 324 (376)
T PRK08762 277 APCYRCLFPEPPPPELAPSCAEAG--VLGVLPGVIG-LLQATEAIKLLLGI 324 (376)
T ss_pred CCCHhhcCCCCCCcccCCCCccCC--cchhhHHHHH-HHHHHHHHHHHhCC
Confidence 5899999886543 345677777 8888877777 66777777777764
No 87
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=47.77 E-value=29 Score=32.45 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=25.0
Q ss_pred CCCcEEEEEeCCCc---hHHHHHHHHHHccCCCEEE
Q 011705 352 QDRSKVIVMDADGT---RSKGIARSLRKLGVMRAFL 384 (479)
Q Consensus 352 ~kd~~IVVyC~sG~---rS~~AA~~L~~~Gf~nV~v 384 (479)
++..+|+++|..|+ ....+|+.|...||+ |.+
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v 57 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTV 57 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEE
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEE
Confidence 67789999999887 567889999999995 655
No 88
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=47.14 E-value=14 Score=36.81 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=29.2
Q ss_pred ccCCCCCCCchHHHhhhhhHhhhhhcccccchHHHHHHHHHHHHHhcCC
Q 011705 189 GTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGF 237 (479)
Q Consensus 189 G~~~~~l~p~~~~~~~~~e~~~~~v~~p~g~~~~qv~~~le~l~~~lg~ 237 (479)
+||++|+.+..++-...|.+.+ +++|.-+.+. ..++.|.++-++|+
T Consensus 163 ~~c~~C~~~~~~~~~~~~~~~g--v~~p~~~~~~-~~~a~e~ik~l~g~ 208 (240)
T TIGR02355 163 EPCYRCLSRLFGENALSCVEAG--VMAPVVGVVG-SLQAMEAIKVLAGI 208 (240)
T ss_pred CCccccccccCCCCCCCccccC--ccchHHHHHH-HHHHHHHHHHHhCC
Confidence 3799999665543223455555 7777777776 45566666666654
No 89
>PLN02727 NAD kinase
Probab=45.82 E-value=38 Score=40.32 Aligned_cols=92 Identities=10% Similarity=0.148 Sum_probs=47.8
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCC----ccccccccccccCcccccchhHhhhcCchhhhHHHHHHHH
Q 011705 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPD----LRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVI 345 (479)
Q Consensus 270 g~ISp~El~elL~~~~~~vLIDVRs~~Ef~~gHIPG----A~~av~~~~~nIPl~el~~~l~~ll~~~~~L~~ll~alGI 345 (479)
++++++++..+.+ ..=-.||+.|+..|- .+..+- +.......+.++|+..... +.++++++....+.-
T Consensus 267 gQpspe~la~LA~-~GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs~~~a------pt~EqVe~fa~~l~~ 338 (986)
T PLN02727 267 GQVTEEGLKWLLE-KGFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVEVRTA------PSAEQVEKFASLVSD 338 (986)
T ss_pred CCCCHHHHHHHHH-CCCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecCCCCC------CCHHHHHHHHHHHHh
Confidence 6899999988764 344589999997762 122111 1111223445666522111 111222221111100
Q ss_pred hhhccCCCCcEEEEEeCCCch-H-HHHHHHHH
Q 011705 346 RNLKIVQDRSKVIVMDADGTR-S-KGIARSLR 375 (479)
Q Consensus 346 s~Lk~~~kd~~IVVyC~sG~r-S-~~AA~~L~ 375 (479)
...+||+++|++|.| + ..+|.++.
T Consensus 339 ------slpkPVLvHCKSGarRAGamvA~yl~ 364 (986)
T PLN02727 339 ------SSKKPIYLHSKEGVWRTSAMVSRWKQ 364 (986)
T ss_pred ------hcCCCEEEECCCCCchHHHHHHHHHH
Confidence 246799999999994 3 33444443
No 90
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=44.51 E-value=20 Score=36.47 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=28.3
Q ss_pred CCCcEEEEEeCCCchHHHHHHHHHHccCCCEE
Q 011705 352 QDRSKVIVMDADGTRSKGIARSLRKLGVMRAF 383 (479)
Q Consensus 352 ~kd~~IVVyC~sG~rS~~AA~~L~~~Gf~nV~ 383 (479)
.++..+++||+.-.........|++.||.++.
T Consensus 186 kpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie 217 (256)
T COG2519 186 KPGGVVVVYSPTVEQVEKTVEALRERGFVDIE 217 (256)
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHhcCccchh
Confidence 56789999999988999999999999997654
No 91
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=41.81 E-value=27 Score=31.07 Aligned_cols=36 Identities=14% Similarity=0.210 Sum_probs=28.0
Q ss_pred EEEEeCCCc-hHHHHHHHHHHccCCCEEEecccHHHH
Q 011705 357 VIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSW 392 (479)
Q Consensus 357 IVVyC~sG~-rS~~AA~~L~~~Gf~nV~vL~GG~~aW 392 (479)
|+++|.+.. ||..|...|+...-.++.+...|+.+|
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~ 37 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAW 37 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCC
Confidence 578897655 899998888876644688888888766
No 92
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=41.26 E-value=75 Score=29.77 Aligned_cols=46 Identities=26% Similarity=0.419 Sum_probs=32.6
Q ss_pred hhccCCCCcEEEEEeCCCc--hHHHHHHHHHH---ccCCCEEEecccHHHH
Q 011705 347 NLKIVQDRSKVIVMDADGT--RSKGIARSLRK---LGVMRAFLVQGGFQSW 392 (479)
Q Consensus 347 ~Lk~~~kd~~IVVyC~sG~--rS~~AA~~L~~---~Gf~nV~vL~GG~~aW 392 (479)
-+++++++..+|+.|..|. .|...|..|.. .|..++..+-||-.++
T Consensus 60 il~~i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~ 110 (155)
T PF02590_consen 60 ILKKIPPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADGL 110 (155)
T ss_dssp HHCTSHTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB-
T ss_pred HHhhccCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCCC
Confidence 3556678889999999987 68888888755 6888999999986544
No 93
>PLN02777 photosystem I P subunit (PSI-P)
Probab=40.64 E-value=68 Score=30.68 Aligned_cols=30 Identities=7% Similarity=-0.188 Sum_probs=26.6
Q ss_pred hhhHHHHhHHHHHHHHHhhhhHhhhhhhhh
Q 011705 448 RRRYNLLLLLALVRLFIGGWLHTMMLKILS 477 (479)
Q Consensus 448 e~~Lq~~G~~~~~~~~~~~~l~~~~~~~~~ 477 (479)
-..|+++|..-..+|..++|||.++-+.|.
T Consensus 124 P~lLELVGigYs~WF~yRyLLfke~ReeL~ 153 (167)
T PLN02777 124 PGVLELVGIGYTGWFAYKNLVFKPDREALI 153 (167)
T ss_pred cchHHHhhhhhhhhhhhhHhcCcccHHHHH
Confidence 457999999999999999999999877663
No 94
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=40.53 E-value=88 Score=27.40 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=20.5
Q ss_pred CCCcEEEEEeCCCc-hHHH--HHHHHHHccC
Q 011705 352 QDRSKVIVMDADGT-RSKG--IARSLRKLGV 379 (479)
Q Consensus 352 ~kd~~IVVyC~sG~-rS~~--AA~~L~~~Gf 379 (479)
..+.+|+|.|..|. ||.. +++.+...|+
T Consensus 76 ~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~ 106 (138)
T smart00195 76 KKGGKVLVHCQAGVSRSATLIIAYLMKYRNL 106 (138)
T ss_pred cCCCeEEEECCCCCchHHHHHHHHHHHHhCC
Confidence 56789999999996 7754 3445666666
No 95
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=40.04 E-value=48 Score=32.61 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=24.8
Q ss_pred CcEEEEEeCCCc---hHHHHHHHHHHccCCCEEEe
Q 011705 354 RSKVIVMDADGT---RSKGIARSLRKLGVMRAFLV 385 (479)
Q Consensus 354 d~~IVVyC~sG~---rS~~AA~~L~~~Gf~nV~vL 385 (479)
.++|+|+|..|+ ....+|+.|...|++ |.++
T Consensus 49 ~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~-V~v~ 82 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLVAARHLKAAGYA-VTVL 82 (203)
T ss_pred CCEEEEEECCCCccHHHHHHHHHHHhCCCc-eEEE
Confidence 578999998776 578899999999984 5533
No 96
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=39.59 E-value=66 Score=27.89 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=19.8
Q ss_pred CCCcEEEEEeCCCc-hHHH--HHHHHHHccC
Q 011705 352 QDRSKVIVMDADGT-RSKG--IARSLRKLGV 379 (479)
Q Consensus 352 ~kd~~IVVyC~sG~-rS~~--AA~~L~~~Gf 379 (479)
.++.+|+|.|..|. ||.. ++..+...|.
T Consensus 71 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 101 (133)
T PF00782_consen 71 SEGGKVLVHCKAGLSRSGAVAAAYLMKKNGM 101 (133)
T ss_dssp HTTSEEEEEESSSSSHHHHHHHHHHHHHHTS
T ss_pred cccceeEEEeCCCcccchHHHHHHHHHHcCC
Confidence 46789999999998 7654 3344555665
No 97
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=38.31 E-value=48 Score=28.43 Aligned_cols=30 Identities=13% Similarity=-0.176 Sum_probs=27.4
Q ss_pred hhhHHHHhHHHHHHHHHhhhhHhhhhhhhh
Q 011705 448 RRRYNLLLLLALVRLFIGGWLHTMMLKILS 477 (479)
Q Consensus 448 e~~Lq~~G~~~~~~~~~~~~l~~~~~~~~~ 477 (479)
...|+++|..-.+.|..++||++++-+.|.
T Consensus 49 ~~llElvGlgyt~wF~~ryLL~~~~R~el~ 78 (90)
T PF14159_consen 49 PGLLELVGLGYTGWFVYRYLLFAENRQELL 78 (90)
T ss_pred HHHHHHHHHHHHhHHHHHHHcChHhHHHHH
Confidence 678999999999999999999999988764
No 98
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=38.12 E-value=48 Score=33.28 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=24.6
Q ss_pred CcEEEEEeCCCc---hHHHHHHHHHHccCCCEEEe
Q 011705 354 RSKVIVMDADGT---RSKGIARSLRKLGVMRAFLV 385 (479)
Q Consensus 354 d~~IVVyC~sG~---rS~~AA~~L~~~Gf~nV~vL 385 (479)
.++|+|+|..|+ ....+|+.|...|| +|.++
T Consensus 60 ~~~V~VlcG~GNNGGDGlv~AR~L~~~G~-~V~v~ 93 (246)
T PLN03050 60 HPRVLLVCGPGNNGGDGLVAARHLAHFGY-EVTVC 93 (246)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHHCCC-eEEEE
Confidence 368999998665 67889999999999 55544
No 99
>PF06152 Phage_min_cap2: Phage minor capsid protein 2; InterPro: IPR009319 This entry is represented by Bacteriophage A118, Gp4, the minor capsid protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=35.07 E-value=1.7e+02 Score=30.98 Aligned_cols=57 Identities=9% Similarity=0.137 Sum_probs=42.1
Q ss_pred hhhhHHhhhhhhhhhhhhhhhhHHHHHhHHhhhhhHhhhhhhhhHhHHHHHhhhhhh
Q 011705 76 SSFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSS 132 (479)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (479)
+-+.++...++..-.+-.++..++|++.++..+..+.+-.++...|++.|+.++...
T Consensus 124 a~~~qt~~dl~~~~~t~~~~~~~~y~~~i~~a~~~v~tG~~t~~~Ai~~av~~~~~~ 180 (361)
T PF06152_consen 124 ALVRQTKGDLNNVNQTLLRTAQDVYRRIIDEAVAQVVTGAFTYQQAIRDAVKKLADS 180 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHc
Confidence 334455555533333445678999999999999988888888889999999876654
No 100
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=34.83 E-value=63 Score=31.01 Aligned_cols=27 Identities=33% Similarity=0.340 Sum_probs=16.9
Q ss_pred CCCcEEEEEeCCCc-hHHH-HHHHHHHcc
Q 011705 352 QDRSKVIVMDADGT-RSKG-IARSLRKLG 378 (479)
Q Consensus 352 ~kd~~IVVyC~sG~-rS~~-AA~~L~~~G 378 (479)
..+++|++.|.+|. |+.. ||..|..+|
T Consensus 131 ~~g~~V~vHC~GGlGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 131 ENGRKVLVHCRGGLGRTGLVAACLLLELG 159 (168)
T ss_dssp HTT--EEEE-SSSSSHHHHHHHHHHHHH-
T ss_pred HcCCEEEEECCCCCCHHHHHHHHHHHHHc
Confidence 46789999999987 7765 556666665
No 101
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.12 E-value=3.3e+02 Score=30.72 Aligned_cols=146 Identities=23% Similarity=0.350 Sum_probs=83.0
Q ss_pred hhhhhhhhHHhhhhhhhhhhhhhhhhHHHHHhHHhhhhhHhhhhhhhhHhHHHHHhhhhhhhccccCCcCCCccccc---
Q 011705 72 SNIKSSFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSKLTNFS--- 148 (479)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--- 148 (479)
...+..++-++..|+--++..--+ |.=+...||++|.-. |.|++. -..-.++-.+|. -++.+.++.+|+
T Consensus 271 ~~~~k~~g~aFg~fkglvG~K~L~-eeDL~pvL~kM~ehL--itKNVA---~eiA~~LcEsV~--a~Legkkv~sfs~V~ 342 (587)
T KOG0781|consen 271 AATKKTVGGAFGLFKGLVGSKSLS-EEDLNPVLDKMTEHL--ITKNVA---AEIAEKLCESVA--ASLEGKKVGSFSTVE 342 (587)
T ss_pred hhhhcchhhHHHHHHhhccccccc-HhhhHHHHHHHHHHH--Hhhhhh---HHHHHHHHHHHH--HHhhhcccccchHHH
Confidence 444556777777776633332222 444566666666542 223321 122334444443 356678888887
Q ss_pred chhHHHhhhc------cchhHHHHHHHHHHhhhhcccCcceEEEeec------------cCCCCCCCchHHHhhhhhHhh
Q 011705 149 TDLKEASSKA------TVAAVDVLRNTIVALEESMTNGASFVVYYYG------------TTKESLPPEIRDALNLYEDRA 210 (479)
Q Consensus 149 ~~~~~~~~~a------~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~G------------~~~~~l~p~~~~~~~~~e~~~ 210 (479)
+..++|...| +.+++|.||.-+.+=+. .|||++-.-| -||-.|.-.++=++.-|+
T Consensus 343 ~Tvk~Al~daLvQILTP~~sVDlLRdI~sar~~----krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACD--- 415 (587)
T KOG0781|consen 343 STVKEALRDALVQILTPQRSVDLLRDIMSARRR----KRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACD--- 415 (587)
T ss_pred HHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhc----CCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEecc---
Confidence 4455555444 66899999998766554 4999988877 233444444444444444
Q ss_pred hhhcccccchHHHHHHHHHHHHHhcC
Q 011705 211 VKLWRPVGSALQQVSVAIEGLERSLG 236 (479)
Q Consensus 211 ~~v~~p~g~~~~qv~~~le~l~~~lg 236 (479)
-|+ -|+.+|..--.+.|....|
T Consensus 416 --TFR--sGAvEQLrtHv~rl~~l~~ 437 (587)
T KOG0781|consen 416 --TFR--SGAVEQLRTHVERLSALHG 437 (587)
T ss_pred --chh--hhHHHHHHHHHHHHHHhcc
Confidence 222 3466666666666666555
No 102
>PRK12361 hypothetical protein; Provisional
Probab=33.39 E-value=2.3e+02 Score=31.46 Aligned_cols=24 Identities=33% Similarity=0.241 Sum_probs=16.7
Q ss_pred CCCcEEEEEeCCCc-hHHH-HHHHHH
Q 011705 352 QDRSKVIVMDADGT-RSKG-IARSLR 375 (479)
Q Consensus 352 ~kd~~IVVyC~sG~-rS~~-AA~~L~ 375 (479)
..+.+|+|.|..|. ||.. ++..|.
T Consensus 173 ~~~~~VlVHC~~G~sRSa~vv~ayLm 198 (547)
T PRK12361 173 RANKSVVVHCALGRGRSVLVLAAYLL 198 (547)
T ss_pred HCCCeEEEECCCCCCcHHHHHHHHHH
Confidence 45678999999998 7654 334443
No 103
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=32.91 E-value=67 Score=27.49 Aligned_cols=29 Identities=28% Similarity=0.531 Sum_probs=22.4
Q ss_pred CCCcEEEEEeCCCchH-HHHHHHHHHccCC
Q 011705 352 QDRSKVIVMDADGTRS-KGIARSLRKLGVM 380 (479)
Q Consensus 352 ~kd~~IVVyC~sG~rS-~~AA~~L~~~Gf~ 380 (479)
..+.+++++-++..++ ...++.|+.+|+.
T Consensus 28 ~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 28 ERGKPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp HTTSEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred HcCCCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 3578999999988877 6678889999995
No 104
>PRK10126 tyrosine phosphatase; Provisional
Probab=32.23 E-value=53 Score=29.92 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=28.1
Q ss_pred cEEEEEeCCCc-hHHHHHHHHHHccCCCEEEecccHHHH
Q 011705 355 SKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSW 392 (479)
Q Consensus 355 ~~IVVyC~sG~-rS~~AA~~L~~~Gf~nV~vL~GG~~aW 392 (479)
.+|+++|.+.. ||..|...++..+- ++.+...|...|
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~~-~~~v~SAG~~~~ 40 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYHP-ELKVESAGLGAL 40 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEeeeccCC
Confidence 47999998655 99999888888763 466777777655
No 105
>PRK10565 putative carbohydrate kinase; Provisional
Probab=31.72 E-value=66 Score=35.65 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=25.4
Q ss_pred CCCcEEEEEeCCCc---hHHHHHHHHHHccCCCEEEe
Q 011705 352 QDRSKVIVMDADGT---RSKGIARSLRKLGVMRAFLV 385 (479)
Q Consensus 352 ~kd~~IVVyC~sG~---rS~~AA~~L~~~Gf~nV~vL 385 (479)
++.++|+|+|..|+ ....+|+.|...||+ |.++
T Consensus 58 ~~~~~v~vl~G~GNNGGDG~v~AR~L~~~G~~-V~v~ 93 (508)
T PRK10565 58 PDARHWLVLCGHGNNGGDGYVVARLAQAAGID-VTLL 93 (508)
T ss_pred CCCCeEEEEEcCCCchHHHHHHHHHHHHCCCc-eEEE
Confidence 44567999998766 578899999999994 5543
No 106
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=31.68 E-value=73 Score=30.84 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=25.4
Q ss_pred CCCcEEEEEeCCCc---hHHHHHHHHHHccCCCEEEe
Q 011705 352 QDRSKVIVMDADGT---RSKGIARSLRKLGVMRAFLV 385 (479)
Q Consensus 352 ~kd~~IVVyC~sG~---rS~~AA~~L~~~Gf~nV~vL 385 (479)
++.++|+|+|..|+ ....+|+.|...|+ +|+.+
T Consensus 43 ~~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v-~V~~~ 78 (205)
T TIGR00197 43 PLAGHVIIFCGPGNNGGDGFVVARHLKGFGV-EVFLL 78 (205)
T ss_pred CCCCeEEEEECCCCCccHHHHHHHHHHhCCC-EEEEE
Confidence 45678999998665 67889999988776 47765
No 107
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=31.20 E-value=20 Score=37.29 Aligned_cols=41 Identities=20% Similarity=0.002 Sum_probs=23.2
Q ss_pred eccCCCCCCCchH----------------HHhhhhhHhhhhhcccccchHHHHHHHHHHH
Q 011705 188 YGTTKESLPPEIR----------------DALNLYEDRAVKLWRPVGSALQQVSVAIEGL 231 (479)
Q Consensus 188 ~G~~~~~l~p~~~----------------~~~~~~e~~~~~v~~p~g~~~~qv~~~le~l 231 (479)
.+||++|+.|... +....|...+ +++|..+.+. ..++.|.+
T Consensus 200 ~t~C~~Cl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g--v~gp~~giig-sl~a~Eai 256 (318)
T TIGR03603 200 ETGCFECLERRLLSRLDWRLYGVFTEYLVKAENNVSTAE--LIFPLLNIKK-NLVVSEIF 256 (318)
T ss_pred CCCcHHHccchhhcccccccccccccccCCCCCCCccCC--eehhHHHHHH-HHHHHHHH
Confidence 3589999987211 1223455555 6677666555 44444444
No 108
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=30.18 E-value=1.4e+02 Score=25.17 Aligned_cols=13 Identities=15% Similarity=0.171 Sum_probs=6.2
Q ss_pred HHHHHHHhhhhcc
Q 011705 166 LRNTIVALEESMT 178 (479)
Q Consensus 166 l~~~~~~~~~~~~ 178 (479)
.+++...+++-+-
T Consensus 58 ~~~~~~~~~~~V~ 70 (94)
T PF05957_consen 58 AREAAEQTEDYVR 70 (94)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555444
No 109
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=29.11 E-value=85 Score=27.77 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=26.5
Q ss_pred EEEEEeCCCc-hHHHHHHHHHHccCCCEEEecccH
Q 011705 356 KVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGF 389 (479)
Q Consensus 356 ~IVVyC~sG~-rS~~AA~~L~~~Gf~nV~vL~GG~ 389 (479)
+|+++|.+.. ||..|-..++.++-.++.+...|.
T Consensus 2 ~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~ 36 (126)
T TIGR02689 2 KVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGL 36 (126)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcC
Confidence 5899997655 899888888887655677777775
No 110
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=28.51 E-value=77 Score=33.81 Aligned_cols=29 Identities=21% Similarity=0.152 Sum_probs=24.4
Q ss_pred CCCcEEEEEeCCCchHHHHHHHHHHccCC
Q 011705 352 QDRSKVIVMDADGTRSKGIARSLRKLGVM 380 (479)
Q Consensus 352 ~kd~~IVVyC~sG~rS~~AA~~L~~~Gf~ 380 (479)
..+.++++.+.+|..|..+++.+.+.|++
T Consensus 174 g~~gkvvvllSGGiDS~vaa~l~~k~G~~ 202 (394)
T PRK01565 174 GTSGKALLLLSGGIDSPVAGYLAMKRGVE 202 (394)
T ss_pred CCCCCEEEEECCChhHHHHHHHHHHCCCE
Confidence 34567999999999999999999889984
No 111
>PF09718 Tape_meas_lam_C: Lambda phage tail tape-measure protein (Tape_meas_lam_C); InterPro: IPR006431 This entry is represented by the C-terminal region of Bacteriophage lambda, GpH. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group are characterised by a relatively well-conserved region near the C terminus of GpH - the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=28.06 E-value=1.9e+02 Score=23.62 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=25.0
Q ss_pred hhhhHHhhhhhhhhhhhhhhhhHHHHHhHHhhhhhHhhhhhh
Q 011705 76 SSFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKS 117 (479)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (479)
..+...+..+.|+-.+.-.+.+++.++++++++..+.+-+..
T Consensus 6 ~G~~~a~~~~~~~a~n~a~~~~~~~~~a~~~~~dal~~f~~t 47 (78)
T PF09718_consen 6 AGAKSALADYADSAQNVASQAEDAFSSAFDGMTDALVDFVTT 47 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666666666666655444433
No 112
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=27.57 E-value=97 Score=35.02 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=31.6
Q ss_pred CCcEEEEEeCCCchHHHHHHHHHHccCCCEEEecccH
Q 011705 353 DRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGF 389 (479)
Q Consensus 353 kd~~IVVyC~sG~rS~~AA~~L~~~Gf~nV~vL~GG~ 389 (479)
-+.|+||+.+.-..+-.+|..|.++|| +++.|.||-
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~g~-~~~tlHg~k 551 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKAGY-KVTTLHGGK 551 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhccc-eEEEeeCCc
Confidence 467899998887788899999999999 799999985
No 113
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=27.41 E-value=1.7e+02 Score=27.69 Aligned_cols=45 Identities=16% Similarity=0.328 Sum_probs=24.4
Q ss_pred hhhhhhHHHHHhHHhhhhhHhhhhhhhhHhHHHHHhhhhhhhccc
Q 011705 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQT 136 (479)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (479)
.|..+-+-+-+.+..+.+++++.++.+++-++.++..+-.-++.|
T Consensus 31 aik~~sd~~~~~l~~~~~~l~eeik~~n~~~~e~l~~~~~kl~et 75 (155)
T PF07464_consen 31 AIKEQSDSVAQQLQNVSSSLQEEIKDANPEAEEALKQLKTKLEET 75 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHH
Confidence 333333444444666666777777766666666665555544433
No 114
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=27.21 E-value=73 Score=29.10 Aligned_cols=37 Identities=22% Similarity=0.153 Sum_probs=27.5
Q ss_pred cEEEEEeCCCc-hHHHHHHHHHHccCCCEEEecccHHHH
Q 011705 355 SKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSW 392 (479)
Q Consensus 355 ~~IVVyC~sG~-rS~~AA~~L~~~Gf~nV~vL~GG~~aW 392 (479)
++|+++|.+.. ||..|...++..+- ++.+...|..+|
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~~-~~~v~SaG~~~~ 40 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRLP-GVKVKSAGVHGL 40 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEcccccCC
Confidence 36999997654 89988888887652 466777787665
No 115
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=27.05 E-value=89 Score=34.34 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=24.5
Q ss_pred CcEEEEEeCCCc---hHHHHHHHHHHccCCCEEEe
Q 011705 354 RSKVIVMDADGT---RSKGIARSLRKLGVMRAFLV 385 (479)
Q Consensus 354 d~~IVVyC~sG~---rS~~AA~~L~~~Gf~nV~vL 385 (479)
.++|+|+|..|+ ....+|+.|...||+ |.++
T Consensus 59 ~~~VlVlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 92 (462)
T PLN03049 59 YRRVLALCGPGNNGGDGLVAARHLHHFGYK-PSIC 92 (462)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCc-eEEE
Confidence 368999998776 567899999999995 5543
No 116
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=26.17 E-value=1e+02 Score=32.69 Aligned_cols=31 Identities=26% Similarity=0.270 Sum_probs=25.8
Q ss_pred CCCcEEEEEeCCCchHHHHHHHHHHccCCCEE
Q 011705 352 QDRSKVIVMDADGTRSKGIARSLRKLGVMRAF 383 (479)
Q Consensus 352 ~kd~~IVVyC~sG~rS~~AA~~L~~~Gf~nV~ 383 (479)
..+.++++...+|..|..+++.+.+.|+ +|.
T Consensus 170 g~~~kvlvllSGGiDS~vaa~ll~krG~-~V~ 200 (371)
T TIGR00342 170 GTQGKVLALLSGGIDSPVAAFMMMKRGC-RVV 200 (371)
T ss_pred CcCCeEEEEecCCchHHHHHHHHHHcCC-eEE
Confidence 3456799999999999999999999998 453
No 117
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=26.12 E-value=1.6e+02 Score=25.90 Aligned_cols=44 Identities=23% Similarity=0.293 Sum_probs=30.1
Q ss_pred CcEEEEEeCCCc----hHHHHHHHHHHccCCCEEEecccH------HHHHHcCC
Q 011705 354 RSKVIVMDADGT----RSKGIARSLRKLGVMRAFLVQGGF------QSWVKEGL 397 (479)
Q Consensus 354 d~~IVVyC~sG~----rS~~AA~~L~~~Gf~nV~vL~GG~------~aW~aaGL 397 (479)
+..+|++|.... ......+.|++.|+.++.++-||- +.|.+.|+
T Consensus 50 ~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~ 103 (122)
T cd02071 50 DVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGV 103 (122)
T ss_pred CCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCC
Confidence 445788876543 235566778899998888888872 34666664
No 118
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=25.64 E-value=82 Score=29.63 Aligned_cols=44 Identities=25% Similarity=0.416 Sum_probs=33.6
Q ss_pred ccCCCCcEEEEEeCCCc--hHHHHHHHHHHc---cCCCEEEecccHHHH
Q 011705 349 KIVQDRSKVIVMDADGT--RSKGIARSLRKL---GVMRAFLVQGGFQSW 392 (479)
Q Consensus 349 k~~~kd~~IVVyC~sG~--rS~~AA~~L~~~---Gf~nV~vL~GG~~aW 392 (479)
+.++++.-+|++|..|. .|...|..+... |..++..+-||-.++
T Consensus 62 ~~l~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~ 110 (157)
T PRK00103 62 AALPKGARVIALDERGKQLSSEEFAQELERWRDDGRSDVAFVIGGADGL 110 (157)
T ss_pred hhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCccEEEEEcCcccc
Confidence 34566778899999887 688888888553 556899999997655
No 119
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=25.11 E-value=64 Score=28.82 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=28.3
Q ss_pred EEEEEeCCCc-hHHHHHHHHHHccCC-CEEEecccHHHH
Q 011705 356 KVIVMDADGT-RSKGIARSLRKLGVM-RAFLVQGGFQSW 392 (479)
Q Consensus 356 ~IVVyC~sG~-rS~~AA~~L~~~Gf~-nV~vL~GG~~aW 392 (479)
+|+++|.+.. ||..|...++...-+ ++.+...|+..+
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~~~ 40 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTSGW 40 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCCCc
Confidence 5899997655 898888888876543 678888887654
No 120
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=24.96 E-value=1.9e+02 Score=31.00 Aligned_cols=10 Identities=40% Similarity=0.909 Sum_probs=7.4
Q ss_pred cceeccCCCC
Q 011705 48 LAIELTPENP 57 (479)
Q Consensus 48 ~~~~~~~~~~ 57 (479)
..+||+|..+
T Consensus 186 ~~I~I~P~~~ 195 (370)
T PLN03094 186 TLIDITPRDP 195 (370)
T ss_pred eeEEEecCCC
Confidence 4588998864
No 121
>PRK08328 hypothetical protein; Provisional
Probab=24.81 E-value=35 Score=33.60 Aligned_cols=43 Identities=9% Similarity=0.153 Sum_probs=29.1
Q ss_pred ccCCCCCCCchHHHhhhhhHhhhhhcccccchHHHHHHHHHHHHHhcCC
Q 011705 189 GTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGF 237 (479)
Q Consensus 189 G~~~~~l~p~~~~~~~~~e~~~~~v~~p~g~~~~qv~~~le~l~~~lg~ 237 (479)
++|++|++|+..+ .+++.+ +++|..+... ..++.|.++-++|+
T Consensus 166 ~~c~~~~~~~~~~---~~~~~~--~~~~~~~ii~-~~~a~e~~k~l~g~ 208 (231)
T PRK08328 166 TKRLREIFPKVKK---KKGKFP--ILGATAGVIG-SIQAMEVIKLITGY 208 (231)
T ss_pred CCCHHHhCCCCCC---ccccCC--cCchHHHHHH-HHHHHHHHHHHhCC
Confidence 4799999997542 234444 7777777776 66667777666664
No 122
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=23.68 E-value=1.1e+02 Score=32.97 Aligned_cols=28 Identities=29% Similarity=0.265 Sum_probs=24.0
Q ss_pred CCcEEEEEeCCCchHHHHHHHHHHccCC
Q 011705 353 DRSKVIVMDADGTRSKGIARSLRKLGVM 380 (479)
Q Consensus 353 kd~~IVVyC~sG~rS~~AA~~L~~~Gf~ 380 (479)
.+.++++.-.+|..|..+++.|.+.|++
T Consensus 179 s~gkvlvllSGGiDSpVAa~ll~krG~~ 206 (381)
T PRK08384 179 TQGKVVALLSGGIDSPVAAFLMMKRGVE 206 (381)
T ss_pred CCCcEEEEEeCChHHHHHHHHHHHcCCe
Confidence 3457888888899999999999999995
No 123
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=23.66 E-value=1.1e+02 Score=34.43 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=24.5
Q ss_pred CcEEEEEeCCCc---hHHHHHHHHHHccCCCEEEe
Q 011705 354 RSKVIVMDADGT---RSKGIARSLRKLGVMRAFLV 385 (479)
Q Consensus 354 d~~IVVyC~sG~---rS~~AA~~L~~~Gf~nV~vL 385 (479)
.++|+|+|..|+ ....+|+.|...||+ |.++
T Consensus 135 ~~~VlVlcGpGNNGGDGLVaAR~L~~~G~~-V~V~ 168 (544)
T PLN02918 135 YSRVLAICGPGNNGGDGLVAARHLHHFGYK-PFVC 168 (544)
T ss_pred CCEEEEEECCCcCHHHHHHHHHHHHHCCCc-eEEE
Confidence 368999998776 567899999999994 5544
No 124
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=22.47 E-value=1.3e+02 Score=30.87 Aligned_cols=24 Identities=8% Similarity=0.339 Sum_probs=15.6
Q ss_pred cCCCEEEec-ccH-HHHHHcCCCccc
Q 011705 378 GVMRAFLVQ-GGF-QSWVKEGLRIKE 401 (479)
Q Consensus 378 Gf~nV~vL~-GG~-~aW~aaGLPV~~ 401 (479)
+.++||++- +|+ +.|...|+.+..
T Consensus 90 ~~~kv~viG~~~l~~~l~~~G~~~~~ 115 (269)
T COG0647 90 PGKKVYVIGEEGLKEELEGAGFELVD 115 (269)
T ss_pred CCCEEEEECCcchHHHHHhCCcEEec
Confidence 345677664 444 688888887765
No 125
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=21.64 E-value=1.1e+02 Score=24.82 Aligned_cols=32 Identities=25% Similarity=0.478 Sum_probs=20.0
Q ss_pred EEEEEeCCCchHHH-HHHH----HHHccCCCEEEeccc
Q 011705 356 KVIVMDADGTRSKG-IARS----LRKLGVMRAFLVQGG 388 (479)
Q Consensus 356 ~IVVyC~sG~rS~~-AA~~----L~~~Gf~nV~vL~GG 388 (479)
+|++.|.+|..+.. ++.. +.+.|+ ++....+.
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi-~~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGI-EVEVSAGS 37 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTE-CEEEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccC-ceEEEEec
Confidence 48999999985444 4344 467786 34444443
No 126
>PRK13530 arsenate reductase; Provisional
Probab=20.91 E-value=1.5e+02 Score=26.65 Aligned_cols=35 Identities=9% Similarity=-0.009 Sum_probs=26.1
Q ss_pred cEEEEEeCCCc-hHHHHHHHHHHccCCCEEEecccH
Q 011705 355 SKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGF 389 (479)
Q Consensus 355 ~~IVVyC~sG~-rS~~AA~~L~~~Gf~nV~vL~GG~ 389 (479)
++|+++|.+.. ||..|-..++..+-.++.+...|.
T Consensus 4 ~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~ 39 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGI 39 (133)
T ss_pred CEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCC
Confidence 47999997655 888888888765445677777776
No 127
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=20.75 E-value=1.9e+02 Score=30.12 Aligned_cols=45 Identities=27% Similarity=0.380 Sum_probs=27.0
Q ss_pred EEEEE---eCCCch--HHHHHHHHHHccCCCEEEecccHHHHHHc--CCCccc
Q 011705 356 KVIVM---DADGTR--SKGIARSLRKLGVMRAFLVQGGFQSWVKE--GLRIKE 401 (479)
Q Consensus 356 ~IVVy---C~sG~r--S~~AA~~L~~~Gf~nV~vL~GG~~aW~aa--GLPV~~ 401 (479)
.|.++ |.-|.+ +....+.|++.|+ ++..+-=|=.+|..+ |.++..
T Consensus 114 rv~~vGTDcavGK~tTal~L~~~l~~~G~-~a~fvaTGQTGimia~~Gv~iDa 165 (301)
T PF07755_consen 114 RVLTVGTDCAVGKMTTALELRRALRERGI-NAGFVATGQTGIMIAGYGVPIDA 165 (301)
T ss_dssp EEEEEESSSSSSHHHHHHHHHHHHHHTT---EEEEE-SHHHHHCHSEC--GGG
T ss_pred EEEEEccCccccHHHHHHHHHHHHHHcCC-CceEEecCCceEEEecCCeeccc
Confidence 44444 667775 5667888999999 566666667788765 444443
Done!