BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011707
(479 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And
Udp- Glucose
Length = 394
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/391 (83%), Positives = 353/391 (90%)
Query: 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW 146
KRVM+IGGDGYCGWATALHLS K YEV IVD+L+RRLFDHQLGL+SLTPIASIHDR+ W
Sbjct: 2 KRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRW 61
Query: 147 KSLTGKNIELYIGDICDXXXXXXXXXXXXPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNV 206
K+LTGK+IELY+GDICD PD+VVHFGEQRSAPYSMIDRSRAV+TQHNNV
Sbjct: 62 KALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNV 121
Query: 207 IGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSF 266
IGTLNVLFA+KEF +ECHLVKLGTMGEYGTPNIDIEEGYITI HNGRTDTLPYPKQASSF
Sbjct: 122 IGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSF 181
Query: 267 YHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALN 326
YHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGV+TDET MHEEL NRLDYD VFGTALN
Sbjct: 182 YHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALN 241
Query: 327 RFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVN 386
RFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVE+AIANPA+ GEFRVFNQFTEQFSVN
Sbjct: 242 RFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVN 301
Query: 387 QLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHIXXXXXXXXXX 446
+LA+LVTKAG KLGLDVK ++VPNPRVEAEEHYYNAKHTKL+ELGL+PH
Sbjct: 302 ELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLMELGLEPHYLSDSLLDSLL 361
Query: 447 NFAIQFKDRVDSKQIMPSVSWRKIGTKPKTV 477
NFA+QFKDRVD+KQIMPSVSW+KIG K K++
Sbjct: 362 NFAVQFKDRVDTKQIMPSVSWKKIGVKTKSM 392
>pdb|1I24|A Chain A, High Resolution Crystal Structure Of The Wild-Type Protein
Sqd1, With Nad And Udp-Glucose
Length = 404
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/390 (83%), Positives = 352/390 (90%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK 147
RVM+IGGDGYCGWATALHLS K YEV IVD+L+RRLFDHQLGL+SLTPIASIHDR+ WK
Sbjct: 13 RVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWK 72
Query: 148 SLTGKNIELYIGDICDXXXXXXXXXXXXPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVI 207
+LTGK+IELY+GDICD PD+VVHFGEQRSAPYSMIDRSRAV+TQHNNVI
Sbjct: 73 ALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVI 132
Query: 208 GTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFY 267
GTLNVLFA+KEF +ECHLVKLGTMGEYGTPNIDIEEGYITI HNGRTDTLPYPKQASSFY
Sbjct: 133 GTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFY 192
Query: 268 HLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALNR 327
HLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGV+TDET MHEEL NRLDYD VFGTALNR
Sbjct: 193 HLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNR 252
Query: 328 FCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQ 387
FCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVE+AIANPA+ GEFRVFNQFTEQFSVN+
Sbjct: 253 FCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNE 312
Query: 388 LAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHIXXXXXXXXXXN 447
LA+LVTKAG KLGLDVK ++VPNPRVEAEEHYYNAKHTKL+ELGL+PH N
Sbjct: 313 LASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLMELGLEPHYLSDSLLDSLLN 372
Query: 448 FAIQFKDRVDSKQIMPSVSWRKIGTKPKTV 477
FA+QFKDRVD+KQIMPSVSW+KIG K K++
Sbjct: 373 FAVQFKDRVDTKQIMPSVSWKKIGVKTKSM 402
>pdb|1I2B|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-SulfoquinovoseUDP-Glucose
pdb|1I2C|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-Glucose
Length = 404
Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/390 (83%), Positives = 351/390 (90%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK 147
RVM+IGGDGYCGWATALHLS K YEV IVD+L+RRLFDHQLGL+SLTPIASIHDR+ WK
Sbjct: 13 RVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWK 72
Query: 148 SLTGKNIELYIGDICDXXXXXXXXXXXXPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVI 207
+LTGK+IELY+GDICD PD+VVHFGEQRSAPYSMIDRSRAV+TQHNNVI
Sbjct: 73 ALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVI 132
Query: 208 GTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFY 267
GTLNVLFA+KEF +ECHLVKLG MGEYGTPNIDIEEGYITI HNGRTDTLPYPKQASSFY
Sbjct: 133 GTLNVLFAIKEFGEECHLVKLGAMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFY 192
Query: 268 HLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALNR 327
HLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGV+TDET MHEEL NRLDYD VFGTALNR
Sbjct: 193 HLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNR 252
Query: 328 FCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQ 387
FCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVE+AIANPA+ GEFRVFNQFTEQFSVN+
Sbjct: 253 FCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNE 312
Query: 388 LAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHIXXXXXXXXXXN 447
LA+LVTKAG KLGLDVK ++VPNPRVEAEEHYYNAKHTKL+ELGL+PH N
Sbjct: 313 LASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLMELGLEPHYLSDSLLDSLLN 372
Query: 448 FAIQFKDRVDSKQIMPSVSWRKIGTKPKTV 477
FA+QFKDRVD+KQIMPSVSW+KIG K K++
Sbjct: 373 FAVQFKDRVDTKQIMPSVSWKKIGVKTKSM 402
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 128/325 (39%), Gaps = 48/325 (14%)
Query: 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRC 145
A++V++ GG GY G T L L GY ++D+ H ++ S+ + LR
Sbjct: 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNF------H----NAFRGGGSLPESLRR 51
Query: 146 WKSLTGKNIELYIGDICDXXXXXXXXXXXXPDAVVHFGEQRSAPYSM---IDRSRAVFTQ 202
+ LTG+++E DI D AV+HF ++ S+ +D R
Sbjct: 52 VQELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRV---- 107
Query: 203 HNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQ 262
N+ GT+ +L MK + +LV + YG P Y+ ++ T P
Sbjct: 108 --NLTGTIQLLEIMKAHGVK-NLVFSSSATVYGNPQ------YLPLDEAHPTGGCTNPYG 158
Query: 263 ASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFG 322
S F+ + D C+A D VV + T H C D G+
Sbjct: 159 KSKFFIEEMIRD------LCQA------DKTWNVVLLRYFNPTGAHASGCIGEDPQGI-P 205
Query: 323 TALNRFCVQAAVG--HPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEF------R 374
L + Q A+G L V+G T +RD + V+LA + A + R
Sbjct: 206 NNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCR 265
Query: 375 VFNQFT-EQFSVNQLAALVTKAGEK 398
++N T +SV Q+ + KA K
Sbjct: 266 IYNLGTGTGYSVLQMVQAMEKASGK 290
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 128/325 (39%), Gaps = 48/325 (14%)
Query: 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRC 145
A++V++ GG GY G T L L GY ++D+ H ++ S+ + LR
Sbjct: 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNF------H----NAFRGGGSLPESLRR 51
Query: 146 WKSLTGKNIELYIGDICDXXXXXXXXXXXXPDAVVHFGEQRSAPYSM---IDRSRAVFTQ 202
+ LTG+++E DI D AV+HF ++ S+ +D R
Sbjct: 52 VQELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRV---- 107
Query: 203 HNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQ 262
N+ GT+ +L MK + +LV + YG P Y+ ++ T P
Sbjct: 108 --NLTGTIQLLEIMKAHGVK-NLVFSSSATVYGNPQ------YLPLDEAHPTGGCTNPYG 158
Query: 263 ASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFG 322
S F+ + D C+A D VV + T H C D G+
Sbjct: 159 KSKFFIEEMIRD------LCQA------DKTWNVVLLRYFNPTGAHASGCIGEDPQGI-P 205
Query: 323 TALNRFCVQAAVG--HPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEF------R 374
L + Q A+G L V+G T +RD + V+LA + A + R
Sbjct: 206 NNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCR 265
Query: 375 VFNQFT-EQFSVNQLAALVTKAGEK 398
++N T +SV Q+ + KA K
Sbjct: 266 IYNLGTGTGYSVLQMVQAMEKASGK 290
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 107/294 (36%), Gaps = 72/294 (24%)
Query: 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI---RRLFDHQLGLDSLTPIASIHDRL 143
KR++I GG G+ G L G+EV +VD+ +R +H +G +
Sbjct: 6 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHE------------ 53
Query: 144 RCWKSLTGKNIELYIGDICDXXXXXXXXXXXXPDAVVHFGEQRSAPYSMIDRSRAVFTQH 203
N EL D+ + D + H S P M + + + T
Sbjct: 54 ---------NFELINHDVVEPLYIEV-------DQIYHLASPASPPNYMYNPIKTLKT-- 95
Query: 204 NNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQA 263
N IGTLN+L K R L+ T YG P + +P+
Sbjct: 96 -NTIGTLNMLGLAK--RVGARLLLASTSEVYGDPEV-------------------HPQSE 133
Query: 264 SSFYHLSKVHDSHNIAFTCKAWGIRATD------LNQGVVYGVRTDETAMHEELCNRLDY 317
+ H++ + C G R + + Q GV + R+
Sbjct: 134 DYWGHVNPIGPR-----ACYDEGKRVAETMCYAYMKQ---EGVEVRVARIFNTFGPRMHM 185
Query: 318 DGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQ-CVELAIANPAQP 370
+ G ++ F +QA G PLTVYG G QTR + + D V V L +N + P
Sbjct: 186 ND--GRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSP 237
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 127/325 (39%), Gaps = 48/325 (14%)
Query: 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRC 145
A++V++ GG GY G T L L GY ++D+ H ++ S+ + LR
Sbjct: 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNF------H----NAFRGGGSLPESLRR 51
Query: 146 WKSLTGKNIELYIGDICDXXXXXXXXXXXXPDAVVHFGEQRSAPYSM---IDRSRAVFTQ 202
+ LTG+++E DI D AV+HF ++ S+ +D R
Sbjct: 52 VQELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRV---- 107
Query: 203 HNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQ 262
N+ GT+ +L MK + +LV + YG P Y+ ++ T P
Sbjct: 108 --NLTGTIQLLEIMKAHGVK-NLVFSSSATVYGNPQ------YLPLDEAHPTGGCTNPYG 158
Query: 263 ASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFG 322
S F+ + D C+A D V + T H C D G+
Sbjct: 159 KSKFFIEEMIRD------LCQA------DKTWNAVLLRYFNPTGAHASGCIGEDPQGI-P 205
Query: 323 TALNRFCVQAAVG--HPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEF------R 374
L + Q A+G L V+G T +RD + V+LA + A + R
Sbjct: 206 NNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCR 265
Query: 375 VFNQFT-EQFSVNQLAALVTKAGEK 398
++N T +SV Q+ + KA K
Sbjct: 266 IYNLGTGTGYSVLQMVQAMEKASGK 290
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 112/309 (36%), Gaps = 74/309 (23%)
Query: 73 RSGLHQSSNDPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI---RRLFDHQLG 129
R L+ + KR++I GG G+ G L G+EV +VD+ +R +H +G
Sbjct: 14 RENLYFQGHXEKDRKRILITGGAGFVGSHLTDKLXXDGHEVTVVDNFFTGRKRNVEHWIG 73
Query: 130 LDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDXXXXXXXXXXXXPDAVVHFGEQRSAP 189
++ I HD + LYI D + H S P
Sbjct: 74 HENFELIN--HDVVEP----------LYI----------------EVDQIYHLASPASPP 105
Query: 190 YSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITIN 249
+ + + T N IGTLN L K R L+ T YG P +
Sbjct: 106 NYXYNPIKTLKT---NTIGTLNXLGLAK--RVGARLLLASTSEVYGDPEV---------- 150
Query: 250 HNGRTDTLPYPKQASSFYHLSKV------HDSHNIAFT-CKAWGIRATDLNQGVVYGVRT 302
+P+ + H++ + + +A T C A+ + GV
Sbjct: 151 ---------HPQSEDYWGHVNPIGPRACYDEGKRVAETXCYAYXKQE---------GVEV 192
Query: 303 DETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQ-CVE 361
+ R + G ++ F +QA G PLTVYG G QTR + + D V V
Sbjct: 193 RVARIFNTFGPRXHXND--GRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVA 250
Query: 362 LAIANPAQP 370
L +N + P
Sbjct: 251 LXNSNVSSP 259
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 19/136 (13%)
Query: 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRL 143
S +K V++ GG GY G T + L GY+ + D+L S +D +
Sbjct: 9 STSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSN----------------STYDSV 52
Query: 144 RCWKSLTGKNIELYIGDICDXXXXXXXXXXXXPDAVVHFGEQRSAPYSMIDRSRAVFTQH 203
+ LT +I Y D+CD D+V+HF ++ S R H
Sbjct: 53 ARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYY---H 109
Query: 204 NNVIGTLNVLFAMKEF 219
NN++GT+ +L M+++
Sbjct: 110 NNILGTVVLLELMQQY 125
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 111/287 (38%), Gaps = 36/287 (12%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK 147
+++I GG G+ G A ++G ++ + D+L R+ D L W
Sbjct: 3 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRK---------------GATDNLH-WL 46
Query: 148 SLTGKNIELYIGDICDXXXXXXXXXXXXPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVI 207
S G N E GDI + PD+ H Q + S ID F NV
Sbjct: 47 SSLG-NFEFVHGDIRNKNDVTRLITKYMPDSCFHLAGQVAMTTS-IDNPCMDFEI--NVG 102
Query: 208 GTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFY 267
GTLN+L A++++ C+++ T YG D+E+ +N T+T + Y
Sbjct: 103 GTLNLLEAVRQYNSNCNIIYSSTNKVYG----DLEQ----YKYN-ETETRYTCVDKPNGY 153
Query: 268 HLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALNR 327
S D H+ + C L+ ++G+ T H + + +
Sbjct: 154 DESTQLDFHS-PYGCSKGAADQYMLDYARIFGLNT-VVFRHSSMYGGRQFATYDQGWVGW 211
Query: 328 FCVQA-----AVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ 369
FC +A + P T+ G G Q R L D + A+AN ++
Sbjct: 212 FCQKAVEIKNGINKPFTISGNGKQVRDVLHAEDMISLYFTALANVSK 258
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 110/293 (37%), Gaps = 63/293 (21%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK 147
+++I GG G+ G A+V +I+ D + +D LT ++ + L
Sbjct: 2 KILITGGAGFIG-------------SAVVRHIIKNTQDTVVNIDKLTYAGNL-ESLSDIS 47
Query: 148 SLTGKNIELYIGDICDXXXXXXXXXXXXPDAVVHFGEQRSAPYSMIDRS---RAVFTQHN 204
N E DICD PDAV+H + S +DRS A F +
Sbjct: 48 ESNRYNFEH--ADICDSAEITRIFEQYQPDAVMHLAAE-----SHVDRSITGPAAFIE-T 99
Query: 205 NVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPN-----IDIEEGYITINHNGRTD---T 256
N++GT +L +++ +GE N I +E Y + H + T
Sbjct: 100 NIVGTYALLEVARKY--------WSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVT 151
Query: 257 LPYPKQASSF-----YHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEEL 311
LP + +++ Y SK H + + +G+ N YG E+L
Sbjct: 152 LPLFTETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYG----PYHFPEKL 207
Query: 312 CNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAI 364
+ + A G PL +YGKG Q R +L + D + + + +
Sbjct: 208 -------------IPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVV 247
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 82/212 (38%), Gaps = 36/212 (16%)
Query: 153 NIELYIGDICDXXXXXXXXXXXXPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNV 212
N+E+ DI D PD + H + S S +++ + F+ NV GTL+V
Sbjct: 52 NVEMISLDIMDSQRVKKVISDIKPDYIFHLAAKSSVKDSWLNK-KGTFS--TNVFGTLHV 108
Query: 213 LFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKV 272
L A+++ +C ++ +G+ EYG I EE ++ + R + PY +S L++
Sbjct: 109 LDAVRDSNLDCRILTIGSSEEYGM--ILPEESPVSEENQLRPMS-PYGVSKASVGMLARQ 165
Query: 273 HDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALNRFC--- 329
+ KA+G+ +H N + G F
Sbjct: 166 Y--------VKAYGM-----------------DIIHTRTFNHIGPGQSLGFVTQDFAKQI 200
Query: 330 --VQAAVGHPLTVYGKGGQTRGYLDIRDTVQC 359
++ P+ G R + D+RD VQ
Sbjct: 201 VDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQA 232
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 19/130 (14%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK 147
RV++ GG GY G T + L G++V I+D+L S L +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----------------SKRSVLPVIE 45
Query: 148 SLTGKNIELYIGDICDXXXXXXXXXXXXPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVI 207
L GK+ GDI + D V+HF ++ S+ + + NNV
Sbjct: 46 RLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESV---QKPLEYYDNNVN 102
Query: 208 GTLNVLFAMK 217
GTL ++ AM+
Sbjct: 103 GTLRLISAMR 112
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 19/130 (14%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK 147
RV++ GG GY G T + L G++V I+D+L S L +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----------------SKRSVLPVIE 45
Query: 148 SLTGKNIELYIGDICDXXXXXXXXXXXXPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVI 207
L GK+ GDI + D V+HF ++ S+ + + NNV
Sbjct: 46 RLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESV---QKPLEYYDNNVN 102
Query: 208 GTLNVLFAMK 217
GTL ++ AM+
Sbjct: 103 GTLRLISAMR 112
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 19/130 (14%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK 147
RV++ GG GY G T + L G++V I+D+L S L +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----------------SKRSVLPVIE 45
Query: 148 SLTGKNIELYIGDICDXXXXXXXXXXXXPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVI 207
L GK+ GDI + D V+HF ++ S+ + + NNV
Sbjct: 46 RLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESV---QKPLEYYDNNVN 102
Query: 208 GTLNVLFAMK 217
GTL ++ AM+
Sbjct: 103 GTLRLISAMR 112
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 19/130 (14%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK 147
RV++ GG GY G T + L G++V I+D+L S L +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----------------SKRSVLPVIE 45
Query: 148 SLTGKNIELYIGDICDXXXXXXXXXXXXPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVI 207
L GK+ GDI + D V+HF ++ S+ + + NNV
Sbjct: 46 RLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESV---QKPLEYYDNNVN 102
Query: 208 GTLNVLFAMK 217
GTL ++ AM+
Sbjct: 103 GTLRLISAMR 112
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 19/130 (14%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK 147
RV++ GG GY G T + L G++V I+D+L S L +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----------------SKRSVLPVIE 45
Query: 148 SLTGKNIELYIGDICDXXXXXXXXXXXXPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVI 207
L GK+ GDI + D V+HF ++ S+ + + NNV
Sbjct: 46 RLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESV---QKPLEYYDNNVN 102
Query: 208 GTLNVLFAMK 217
GTL ++ AM+
Sbjct: 103 GTLRLISAMR 112
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 19/130 (14%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK 147
RV++ GG GY G T + L G++V I+D+L S L +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----------------SKRSVLPVIE 45
Query: 148 SLTGKNIELYIGDICDXXXXXXXXXXXXPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVI 207
L GK+ GDI + D V+HF ++ S+ + + NNV
Sbjct: 46 RLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESV---QKPLEYYDNNVN 102
Query: 208 GTLNVLFAMK 217
GTL ++ AM+
Sbjct: 103 GTLRLISAMR 112
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 19/130 (14%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK 147
RV++ GG GY G T + L G++V I+D+L S L +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----------------SKRSVLPVIE 45
Query: 148 SLTGKNIELYIGDICDXXXXXXXXXXXXPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVI 207
L GK+ GDI + D V+HF ++ S+ + + NNV
Sbjct: 46 RLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESV---QKPLEYYDNNVN 102
Query: 208 GTLNVLFAMK 217
GTL ++ AM+
Sbjct: 103 GTLRLISAMR 112
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 19/130 (14%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK 147
RV++ GG GY G T + L G++V I+D+L S L +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----------------SKRSVLPVIE 45
Query: 148 SLTGKNIELYIGDICDXXXXXXXXXXXXPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVI 207
L GK+ GDI + D V+HF ++ S+ + + NNV
Sbjct: 46 RLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESV---QKPLEYYDNNVN 102
Query: 208 GTLNVLFAMK 217
GTL ++ AM+
Sbjct: 103 GTLRLISAMR 112
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 19/130 (14%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK 147
RV++ GG GY G T + L G++V I+D+L S L +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----------------SKRSVLPVIE 45
Query: 148 SLTGKNIELYIGDICDXXXXXXXXXXXXPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVI 207
L GK+ GDI + D V+HF ++ S+ + + NNV
Sbjct: 46 RLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESV---QKPLEYYDNNVN 102
Query: 208 GTLNVLFAMK 217
GTL ++ AM+
Sbjct: 103 GTLRLISAMR 112
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 19/130 (14%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK 147
RV++ GG GY G T + L G++V I+D+L S L +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----------------SKRSVLPVIE 45
Query: 148 SLTGKNIELYIGDICDXXXXXXXXXXXXPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVI 207
L GK+ GDI + D V+HF ++ S+ + + NNV
Sbjct: 46 RLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESV---QKPLEYYDNNVN 102
Query: 208 GTLNVLFAMK 217
GTL ++ AM+
Sbjct: 103 GTLRLISAMR 112
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 62/154 (40%), Gaps = 29/154 (18%)
Query: 89 VMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLG-LDSLTPIASIHDRLRCWK 147
++I GG GY G L ++G V +VD+L Q G D++T A
Sbjct: 4 ILICGGAGYIGSHAVKKLVDEGLSVVVVDNL-------QTGHEDAITEGA---------- 46
Query: 148 SLTGKNIELYIGDICDXXXXXXXXXXXXPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVI 207
+ Y GD+ D +AV+HF SM + + +NNV
Sbjct: 47 -------KFYNGDLRDKAFLRDVFTQENIEAVMHFAADSLVGVSM---EKPLQYYNNNVY 96
Query: 208 GTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDI 241
G L +L M EF+ + + T YG ++D+
Sbjct: 97 GALCLLEVMDEFKVDKFIFS-STAATYGEVDVDL 129
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 21/143 (14%)
Query: 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRL 143
S+ K +++ GG G+ G ++ N +V H LD LT + +
Sbjct: 2 SQFKNIIVTGGAGFIGSNFVHYVYNNHPDV------------HVTVLDKLTYAGNKANL- 48
Query: 144 RCWKSLTGKNIELYIGDICDXXXXXXXXXXXXPDAVVHFGEQRSAPYSMIDRSRAVFTQH 203
+++ G +EL +GDI D DA+VH+ + S+ D S + H
Sbjct: 49 ---EAILGDRVELVVGDIADAELVDKLAAKA--DAIVHYAAESHNDNSLNDPSPFI---H 100
Query: 204 NNVIGTLNVLFAMKEFRQECHLV 226
N IGT +L A +++ H V
Sbjct: 101 TNFIGTYTLLEAARKYDIRFHHV 123
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 41/192 (21%)
Query: 177 DAVVHFGEQRSAPYSMIDRSRA---VFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGE 233
D VVH + S +DRS + +F H+NVIGT +L +++ E V + T
Sbjct: 77 DGVVHLAAE-----SHVDRSISSPEIFL-HSNVIGTYTLLESIRRENPEVRFVHVSTDEV 130
Query: 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSK-VHDSHNIAFTCKAWGIRATDL 292
YG DI +G T N D L SS Y +K D + +T R +L
Sbjct: 131 YG----DILKGSFTEN-----DRL----MPSSPYSATKAASDMLVLGWT------RTYNL 171
Query: 293 NQGVVYGVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLD 352
N + R + +L + + ++A++G + +YG G R +L
Sbjct: 172 NASI---TRCTNNYGPYQFPEKL---------IPKTIIRASLGLKIPIYGTGKNVRDWLY 219
Query: 353 IRDTVQCVELAI 364
+ D V+ +EL +
Sbjct: 220 VEDHVRAIELVL 231
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 22/135 (16%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI--RRLFDHQLGLDSLTPIASIHDRLRC 145
R+++ GG G+ G L GYEV +VD+L RR F + P A +H +R
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREF--------VNPSAELH--VRD 51
Query: 146 WKSLT-GKNIELYIGDICDXXXXXXXXXXXXPDAVVHFGEQRSAPYSMIDRSR------A 198
K + G I+ GD+ + +VHF E A +++++ +R
Sbjct: 52 LKDYSWGAGIK---GDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTV 108
Query: 199 VFTQHNNVIGTLNVL 213
VF + V G +V+
Sbjct: 109 VFASSSTVYGDADVI 123
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 89 VMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120
+++ GG GY G TA+ L GY+V I D+L+
Sbjct: 8 ILVTGGAGYIGSHTAVELLAHGYDVVIADNLV 39
>pdb|3HXR|A Chain A, Nucleoporin Nup120 From S.Cerevisiae (Aa 1-757)
Length = 761
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 33 TSFTVKTSKSPIQTVI---LSAQR-----SQRCHTVYATATPFTPTQSRSGLHQSSNDPS 84
T F ++SKS +VI L +R +Q CH T FT Q + QS +DPS
Sbjct: 213 TRFFSRSSKSDYDSVISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDXVSQSDSDPS 272
Query: 85 KAKRVMIIG 93
++V +G
Sbjct: 273 HFRKVEAVG 281
>pdb|3H7N|A Chain A, Structure Of Nup120
pdb|3H7N|B Chain B, Structure Of Nup120
pdb|3H7N|C Chain C, Structure Of Nup120
pdb|3H7N|D Chain D, Structure Of Nup120
Length = 729
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 33 TSFTVKTSKSPIQTVI---LSAQR-----SQRCHTVYATATPFTPTQSRSGLHQSSNDPS 84
T F ++SKS +VI L +R +Q CH T FT Q + QS +DPS
Sbjct: 209 TRFFSRSSKSDYDSVISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDMVSQSDSDPS 268
Query: 85 KAKRVMIIG 93
++V +G
Sbjct: 269 HFRKVEAVG 277
>pdb|3F7F|A Chain A, Structure Of Nup120
pdb|3F7F|B Chain B, Structure Of Nup120
pdb|3F7F|C Chain C, Structure Of Nup120
pdb|3F7F|D Chain D, Structure Of Nup120
Length = 729
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 33 TSFTVKTSKSPIQTVI---LSAQR-----SQRCHTVYATATPFTPTQSRSGLHQSSNDPS 84
T F ++SKS +VI L +R +Q CH T FT Q + QS +DPS
Sbjct: 209 TRFFSRSSKSDYDSVISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDMVSQSDSDPS 268
Query: 85 KAKRVMIIG 93
++V +G
Sbjct: 269 HFRKVEAVG 277
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 95/276 (34%), Gaps = 73/276 (26%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK 147
R+++ GG G+ G L GYEV +VD + R
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEVVVVDIVQRD------------------------- 36
Query: 148 SLTGKNIELYIGDICDXXXXXXXXXXXXPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVI 207
TG + EL++ D+ D D V HF + P + + + + NV+
Sbjct: 37 --TGGSAELHVRDLKDYSWGAGIKG----DVVFHFA---ANPEVRLSTTEPIVHFNENVV 87
Query: 208 GTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQAS--- 264
T NVL E+ ++ V+ T G D +P P++
Sbjct: 88 ATFNVL----EWARQTG-VRTVVFASSSTV-------------YGDADVIPTPEEEPYKP 129
Query: 265 -SFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGT 323
S Y +K A + +G+R + V G R L + + YD +
Sbjct: 130 ISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVGPR---------LRHGVIYDFIMKL 180
Query: 324 ALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQC 359
N + L V G G Q + YL +RD V+
Sbjct: 181 RRNP--------NVLEVLGDGTQRKSYLYVRDAVEA 208
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 104/282 (36%), Gaps = 57/282 (20%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK 147
RV++ GG G+ G L +G EVA++D+L G P
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNL-------ATGKRENVP------------ 42
Query: 148 SLTGKNIELYIGDICDXXXXXXXXXXXXPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVI 207
K + + D+ D P V H Q S S+ D V N++
Sbjct: 43 ----KGVPFFRVDLRDKEGVERAFREFRPTHVSHQAAQASVKVSVED---PVLDFEVNLL 95
Query: 208 GTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFY 267
G LN+L A +++ E LV T G Y + R + +P + S Y
Sbjct: 96 GGLNLLEACRQYGVE-KLVFASTGGAI----------YGEVPEGERAEET-WPPRPKSPY 143
Query: 268 HLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALNR 327
SK H ++ +++G++ L G VYG R D H E GV
Sbjct: 144 AASKAAFEHYLSVYGQSYGLKWVSLRYGNVYGPRQDP---HGEA-------GVVAI---- 189
Query: 328 FCVQAAVGHPLTVY-----GKGGQTRGYLDIRDTVQCVELAI 364
F + G P+T+Y G G R Y+ + D + LA+
Sbjct: 190 FAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHALAL 231
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 83/215 (38%), Gaps = 34/215 (15%)
Query: 88 RVMIIGGDGYCG--WATALHLSNKGYEVAIVDSLI--RRLFDHQLGLDSLTPIASIHDRL 143
RV++ GG GY G + AL L + + V IVDSL+ DH +++ D
Sbjct: 4 RVLVCGGAGYIGSHFVRAL-LRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGP 62
Query: 144 R-CWKSLTGKNIELYIGDICDXXXXXXXXXXXXP-DAVVHF------GEQRSAPYSMIDR 195
+ W + L +GD+ + P DAVVH GE P D
Sbjct: 63 KPPWAD---RYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYD- 118
Query: 196 SRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGE-YGTPNIDIEEGYITINHNGRT 254
NNV+G L +L AM +C + + +G P + +++ N
Sbjct: 119 --------NNVVGILRLLQAM--LLHKCDKIIFSSSAAIFGNPTMG------SVSTNAEP 162
Query: 255 DTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRA 289
+ K S Y SK+ I +A+GI+
Sbjct: 163 IDINAKKSPESPYGESKLIAERMIRDCAEAYGIKG 197
>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
pdb|2CDU|B Chain B, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
Length = 452
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDH 126
KAK + IIG GY G A SN+ Y V ++D R L+ +
Sbjct: 148 KAKTITIIGS-GYIGAELAEAYSNQNYNVNLIDGHERVLYKY 188
>pdb|3TGV|A Chain A, Crystal Structure Of Hutz,The Heme Storsge Protein From
Vibrio Cholerae
pdb|3TGV|B Chain B, Crystal Structure Of Hutz,The Heme Storsge Protein From
Vibrio Cholerae
pdb|3TGV|C Chain C, Crystal Structure Of Hutz,The Heme Storsge Protein From
Vibrio Cholerae
pdb|3TGV|D Chain D, Crystal Structure Of Hutz,The Heme Storsge Protein From
Vibrio Cholerae
Length = 148
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Query: 216 MKEFRQECHLVKLGTMGEYGTPNIDI------EEGY-ITINHNGR 253
+KEFRQE ++L T+ G PN+ +EGY + I+H R
Sbjct: 7 IKEFRQERKTLQLATVDAQGRPNVSYAPFVQNQEGYFVLISHIAR 51
>pdb|3ATQ|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius
pdb|3ATR|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius Co- Crystallized With Its Ligand
Length = 453
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 89 VMIIGGDGYCGWATALHLSNKGYEVAIVDS 118
V+IIGG G+ G + A LS +G ++ +VDS
Sbjct: 9 VLIIGG-GFAGSSAAYQLSRRGLKILLVDS 37
>pdb|1WAM|A Chain A, Structure Of Udp-Galactopyranose Mutase From Klebsiella
Pneumoniae With Fadh-
Length = 384
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVD 117
K+K+++I+G G+ G L+ KG++V I+D
Sbjct: 2 KSKKILIVGA-GFSGAVIGRQLAEKGHQVHIID 33
>pdb|2BI7|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae
Oxidised Fad
pdb|2BI8|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae With
Reduced Fad
Length = 384
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVD 117
K+K+++I+G G+ G L+ KG++V I+D
Sbjct: 2 KSKKILIVGA-GFSGAVIGRQLAEKGHQVHIID 33
>pdb|3GF4|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3GF4|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3INR|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INR|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INT|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3INT|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3KYB|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
pdb|3KYB|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
Length = 390
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVD 117
K+K+++I+G G+ G L+ KG++V I+D
Sbjct: 2 KSKKILIVGA-GFSGAVIGRQLAEKGHQVHIID 33
>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn
From Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr310
Length = 227
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIV 116
K K++++IG G+ G A N+G+EV V
Sbjct: 2 EKVKKIVLIGASGFVGSALLNEALNRGFEVTAV 34
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,681,318
Number of Sequences: 62578
Number of extensions: 534078
Number of successful extensions: 1128
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1086
Number of HSP's gapped (non-prelim): 46
length of query: 479
length of database: 14,973,337
effective HSP length: 103
effective length of query: 376
effective length of database: 8,527,803
effective search space: 3206453928
effective search space used: 3206453928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)